Citrus Sinensis ID: 006743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630---
Protein Sequence
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI
Secondary Structure (PSIPRED)
cccccccEEEEEEccccEEEEEccccccccccccccccEEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEEccccccEEEEEEcccccEEEEccccccEEEEcccccccEEEcccccccEEEEccccEEEEEcccccEEEEcccccccEEEccccccccccEEEcccccEEEEcccccccccccEEEEEcccccccEEcccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccEEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEEccccccEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccccEEEEEcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHcHcccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcc
Coil and Loop (DISEMBL)
mynckdehlASISLSGDLILHNLasgakaaelkdpneqVLRVLDYSRNSRHLLVtagddgtlhlwdttgrspkvswlkqhsaptagisfssdDKIIAsvgldkklytydpgsrrpsscityeapfsslafidddwiltagtsngrvvfydirgkpqpltvLRACSSSEAVSSLCWqrakpvfidettCKAETALlggavgdsilmpdplpsvttssvSLSTavsgsrpnsrsgpsaeassltvggtgeetpqrsylrpggplarlhaprssynfkddmevfsplvdvqpitpsldklwdghegakkdhlpidkkpssmlfpsssrrfpyaedgsnehsvfdwkssstskqddarsfallgstpspssksedssitppeawggeklsdkFALLrqplnmpsrygmstssgltsssmysglqdvslsqtsissltdsnlsrenmrtkdvtsyqetsslgfpehlsssfpslslgtkgilgsgnldssrpssltlthreprrtyaeristtsgtslsvgspktkktgAETKEELLSNFlsrsdtsavvepgippainggmsqslkspqpdppqgsnftLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCmcctldlplVFQNFLSHI
Flexible Loop (DISEMBL)
MYNCKDEHLASISLSGDLILHNLASGAkaaelkdpnEQVLRVLDYSRNSRHLLvtagddgtlhLWDTTGRSPKVSWLKQHSaptagisfssddKIIASVgldkklytydpgsrrpssCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVsgsrpnsrsgpsaeassltvggtgeetpqrsylrpggpLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEgakkdhlpidkkpssmlfpSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLgstpspssksedssITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSltdsnlsrenmrtKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILgsgnldssrpssltlthreprrtyaeristtsgtslsvgspktkktgaeTKEELLSnflsrsdtsaVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI
Low Complexity Region (SEG)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPsvttssvslstavsgsrpnsrsgpsAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLGstpspssksedssitppEAWGGEKLSDKFALLRQPLNMPSRygmstssgltsssmysglQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERIsttsgtslsvgsPktkktgaetkeeLLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI
Disordered region (IsUnstruct)
***********ISLSGDLILHNLASG***********QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL*************************************************************************MEVFSPLVDVQPITPSLDKLW************************************************************************************************************************************************************************************************************************************************************************************TLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFL***
Disordered Region (DISOPRED)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLF****************HSVFDW*********************************PPEAWGGEKLSDK*AL*RQ*LNMPSRYGM****GLT**SMYSGLQDVSL*****************************************************************************************************************************************************FTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI
Disordered Region (DISEMBL)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA*********LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS*******************************************YLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPY***********************ARSFALL*****************PEAWGGEKLSDKFALLRQPLNMPSRY**************SGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERI*******************AETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQ***********GSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI
Disordered Region (DISPRO)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA*************************************************************************************************DDMEVFSPLVDV**ITP*L******HEGAKKDHLP********************************************************************************************************************************************************************************************************************************************************************GSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	633	2.2.26 [Sep-21-2011]
Q3B7M6	659	Protein NEDD1 OS=Bos taur	yes	no	0.273	0.262	0.323	2e-21
Q8NHV4	660	Protein NEDD1 OS=Homo sap	no	no	0.331	0.318	0.280	1e-20
P33215	660	Protein NEDD1 OS=Mus musc	yes	no	0.273	0.262	0.301	2e-19
Q54S59	299	WD repeat-containing prot	yes	no	0.224	0.474	0.313	2e-08
Q55563	1693	Uncharacterized WD repeat	N/A	no	0.197	0.073	0.297	3e-05
B6GZA1	673	Probable E3 ubiquitin lig	yes	no	0.227	0.213	0.298	7e-05
P29829	346	Guanine nucleotide-bindin	no	no	0.167	0.306	0.293	0.0002
P90917	412	Probable histone-binding	yes	no	0.176	0.271	0.277	0.0002
Q9VAT2	621	DDB1- and CUL4-associated	no	no	0.109	0.111	0.347	0.0003
Q4X0M4	1263	Protein transport protein	no	no	0.200	0.100	0.301	0.0004

>sp|Q3B7M6|NEDD1_BOVIN Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 3/176 (1%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
           YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSIRHLKYSLFKKSLLGSVSDNGI 186

Query: 62  LHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           + LWD   +SP  ++   H AP +GI FS  ++ +  +VGLDK++  YD  S++    + 
Sbjct: 187 VTLWDVNSQSPYHNFDSTHKAPASGICFSPVNELLFVTVGLDKRIILYDTSSKKLVKTLV 246

Query: 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176
            +AP +++ F+ D   L  G+S G++  YD+R    P+  + A  +S  V  + +Q
Sbjct: 247 ADAPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPIKTISAHKTS--VQCIAFQ 300

Required for mitosis progression. Promotes the nucleation of microtubules from the spindle.
Bos taurus (taxid: 9913)

>sp|Q8NHV4|NEDD1_HUMAN Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=1 SV=1

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 18/228 (7%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
           YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 186

Query: 62  LHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           + LWD   +SP  ++   H AP +GI FS  ++ +  ++GLDK++  YD  S++    + 
Sbjct: 187 VTLWDVNSQSPYHNFDSVHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query: 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA-- 178
            + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S  V  + +Q +  
Sbjct: 247 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS--VQCIAFQYSTV 304

Query: 179 ------------KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214
                       KP  +++ +     A  GG     I+   P  S+ T
Sbjct: 305 LTKSSLNKGCSNKPTTVNKRSVNVNAA-SGGVQNSGIVREAPATSIAT 351

Required for mitosis progression. Promotes the nucleation of microtubules from the spindle.

Homo sapiens (taxid: 9606)

>sp|P33215|NEDD1_MOUSE Protein NEDD1 OS=Mus musculus GN=Nedd1 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 3/176 (1%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
           YN  D ++AS SLSG++ILH++ +   +      ++Q +R + YS   + LL +  D+G 
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHGSKQPIRHIKYSLFRKSLLGSVSDNGV 186

Query: 62  LHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           + LWD   +S   ++   H AP +GI FS  ++ +  ++GLDK++  YD  S++    + 
Sbjct: 187 VTLWDVNSQSSYHTFDSTHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query: 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176
            + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S  V  + +Q
Sbjct: 247 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS--VQCIAFQ 300

Required for mitosis progression. Promotes the nucleation of microtubules from the spindle (By similarity). May play an important role during the embryonic development and differentiation of the central nervous system.

Mus musculus (taxid: 10090)

>sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog OS=Dictyostelium discoideum GN=wdr61 PE=4 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 86/150 (57%), Gaps = 8/150 (5%)

Query: 7   EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66
            +L S+S SG++ ++++ +G K   + + N+QVL  +  S N+  + V AG DGT+  +D
Sbjct: 111 NNLVSVSESGNISIYSVETGEKLRSISNTNKQVL-TMAISPNNEQIAV-AGLDGTVLCYD 168

Query: 67  T-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP--SSCITYEA 123
             +GR  +VS +K H  P   + FSSD K I +   D ++  +DP S  P  +S + + +
Sbjct: 169 VESGR--RVSEIKAHGVPIRSLCFSSDSKTIFTGAEDSQIRLHDPNSSNPYIASLLGHSS 226

Query: 124 -PFSSLAFIDDDWILTAGTSNGRVVFYDIR 152
             FS +A  + D + ++G+ + +V  +DI+
Sbjct: 227 FIFSLVASSNGDLLASSGSIDRKVCIWDIK 256

Dictyostelium discoideum (taxid: 44689)

>sp|Q55563|Y163_SYNY3 Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0163 PE=4 SV=1

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 26   GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85
            G K   L+   + VL V  +S +S+++ VTA  DGT  +W+ TGR   V  L+ +     
Sbjct: 1414 GKKLTVLRGHQDAVLNV-RFSPDSQYI-VTASKDGTARVWNNTGRELAV--LRHYEKNIF 1469

Query: 86   GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAF-IDDDWILTAGTSNG 144
               FS+D + I +   D     ++   R    C  +E P     F  D  +ILTA   N 
Sbjct: 1470 AAEFSADGQFIVTASDDNTAGIWEIVGREVGICRGHEGPVYFAQFSADSRYILTASVDNT 1529

Query: 145  RVVFYDIRGKP 155
              + +D  G+P
Sbjct: 1530 ARI-WDFLGRP 1539

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|B6GZA1|SCONB_PENCW Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=sconB PE=3 SV=1

 Score = 49.7 bits (117), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 17/161 (10%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN---SRHLLVTAG 57
           + +C+++H+ + S  GD IL  L+   +A     PN       D  ++   S   ++T+G
Sbjct: 522 LADCENDHVGTSSQGGDNILSTLSPLLEATSPSHPNSPFGSSFDQDQDRIESPRYILTSG 581

Query: 58  DDGTLHLWDT-TGRSPKVSWLKQHSAPTAGI-SFSSDDKIIASVGLDKKLYTYDPGSRRP 115
            D T+ LW+T TGR      L+       GI + S+D   IAS G+D+ +  +DP  R P
Sbjct: 582 VDTTIRLWETSTGRC-----LRTFFGHLEGIWALSADTLRIASGGMDRMVKIWDP--RIP 634

Query: 116 SSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153
           +   TYE   A  + +   D  +I   G  + +V  YD R 
Sbjct: 635 TGQDTYEGHSAAVNCIGLSDSRFI--TGGDDYQVRMYDFRA 673

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) (taxid: 500485)

>sp|P29829|GBB2_DROME Guanine nucleotide-binding protein subunit beta-2 OS=Drosophila melanogaster GN=Gbeta76C PE=1 SV=3

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 10/116 (8%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD 102
           + ++ +SRH  VT   DG L +WDT   + KV  +   SA    ++FS     +A  G+D
Sbjct: 65  VHFAGDSRHC-VTGSLDGKLIIWDTW-TANKVQIIPLRSAWVMTVAFSPSGNFVACGGMD 122

Query: 103 KKLYTYDPGSRRPSSC-------ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151
            +   YD  +R  S         + YE   SS  F+DD  ++T G+ + ++  +D+
Sbjct: 123 NQCTVYDVNNRDASGVAKMVKELMGYEGFLSSCRFLDDGHLIT-GSGDMKICHWDL 177

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Drosophila melanogaster (taxid: 7227)

>sp|P90917|RBA1_CAEEL Probable histone-binding protein rba-1 OS=Caenorhabditis elegans GN=rba-1 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 25/137 (18%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWD------TTGRSPKVSWLKQHSAPTAGISFSS-DDKI 95
           + +S      L+TAGDDG +  WD       +G+    S  K HS+    +SF +  + +
Sbjct: 177 MSWSNTREGHLLTAGDDGMICHWDINANQTISGQIVPQSKFKGHSSNAEDVSFHALHNFV 236

Query: 96  IASVGLDKKLYTYDPGSRRPS----------SCITYEAPFSSLAFIDDDWILTAGTSNGR 145
             SVG D+KL  +D    +P           +CIT+  PFS       ++IL  G+ +  
Sbjct: 237 FGSVGDDRKLNLWDLRQSKPQLTAVGHTAEVNCITFN-PFS-------EYILATGSVDKT 288

Query: 146 VVFYDIRGKPQPLTVLR 162
           V  +D+R   + +  L+
Sbjct: 289 VALWDMRNMRKKMYTLK 305

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA (By similarity). Required to repress the induction of vulval development by Ras signaling.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VAT2|DCA10_DROME DDB1- and CUL4-associated factor 10 homolog OS=Drosophila melanogaster GN=CG1523 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%)

Query: 52  LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111
           L  T  DD T+ LWD      K+  L  HS     I +SS DK++ S G D  ++T+D  
Sbjct: 104 LFATGSDDFTVALWDLRNMKQKLRVLHGHSNWVKNIEYSSKDKLLVSSGFDGSIFTWDIN 163

Query: 112 SRRPSSCIT 120
           S+     I+
Sbjct: 164 SQTEQGLIS 172

Drosophila melanogaster (taxid: 7227)

>sp|Q4X0M4|SEC31_ASPFU Protein transport protein sec31 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sec31 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 29/156 (18%)

Query: 44  DYSRNSRHLLVTAGDDGTLHLWDT----TGRSPKV-SWLKQHSAPTAGISFS-SDDKIIA 97
           DY  NSR ++  A ++G+L LWD      G S  V S + +HS     + F+     ++A
Sbjct: 78  DYEDNSRGVIAGALENGSLDLWDADKLINGSSDAVISRMTKHSGAIKALQFNPKHSNLLA 137

Query: 98  SVGLDKKLYTYDPGSRRPSSCITYEAPF---SSLAFIDD----DW------ILTAGTSNG 144
           + G   +LY  D  +      IT   P+   S+ A  DD    DW      IL  G+S G
Sbjct: 138 TGGAKGELYISDLNN------ITN--PYRLGSAAARADDIECLDWNKKVAHILVTGSSAG 189

Query: 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP 180
            V  +D++ + + LT+       +AVS++ W   KP
Sbjct: 190 FVTVWDVKTRKESLTLNNM--GRKAVSAVAWDPEKP 223

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	633
359486608	805	PREDICTED: uncharacterized protein LOC10	0.971	0.763	0.735	0.0
296086168	779	unnamed protein product [Vitis vinifera]	0.949	0.771	0.732	0.0
224101047	785	predicted protein [Populus trichocarpa]	0.949	0.765	0.722	0.0
224109450	777	predicted protein [Populus trichocarpa]	0.952	0.776	0.697	0.0
449441356	799	PREDICTED: protein NEDD1-like [Cucumis s	0.957	0.758	0.718	0.0
356499133	795	PREDICTED: protein NEDD1-like [Glycine m	0.955	0.761	0.677	0.0
356553817	846	PREDICTED: protein NEDD1-like [Glycine m	0.952	0.712	0.670	0.0
357492447	819	Protein NEDD1 [Medicago truncatula] gi|3	0.957	0.739	0.661	0.0
225459552	785	PREDICTED: protein NEDD1-like [Vitis vin	0.943	0.760	0.663	0.0
255566510	799	protein with unknown function [Ricinus c	0.954	0.755	0.705	0.0

>gi|359486608|ref|XP_002277667.2| PREDICTED: uncharacterized protein LOC100246247 [Vitis vinifera]

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/642 (73%), Positives = 534/642 (83%), Gaps = 27/642 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISL+GDLILHNLASGA+AAELKDPNEQV RVLDYSR SRHLLVTAGDDG
Sbjct: 141 MYNCKDEHLASISLNGDLILHNLASGARAAELKDPNEQVSRVLDYSRISRHLLVTAGDDG 200

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++H+WDTTGRSPKVSWLKQHSAPTAG+SFS S+DKIIA+VGLDKKLYT+D GSRRPSSCI
Sbjct: 201 SIHMWDTTGRSPKVSWLKQHSAPTAGVSFSPSNDKIIATVGLDKKLYTFDTGSRRPSSCI 260

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
            YEAPFSSLAF DD  IL AGTSNGRVVFYD+RGKPQP TVLRA SSSEAV+SLCWQR+K
Sbjct: 261 PYEAPFSSLAFRDDGLILAAGTSNGRVVFYDVRGKPQPFTVLRAYSSSEAVTSLCWQRSK 320

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV ++E+ C  ETALLGGAV DSILMPDPLPSVT+SS+SLSTA+  SR   RSGPS E S
Sbjct: 321 PVIVNESNCTPETALLGGAVEDSILMPDPLPSVTSSSLSLSTAIPASRNPGRSGPSTETS 380

Query: 240 SLTVG-----------GTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
           SLT              T EETPQ+++LRPGG LARLHAPRS+YNFKDDMEVFSPLVD+Q
Sbjct: 381 SLTAASGGSVSSSLYLSTEEETPQKNHLRPGGTLARLHAPRSNYNFKDDMEVFSPLVDIQ 440

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           PITPSLDKLWD HE AKKDHLP+DKKPSS+LFPSSSRRFP+ +DG+ +H +FDWKSSSTS
Sbjct: 441 PITPSLDKLWDNHEAAKKDHLPVDKKPSSLLFPSSSRRFPFVDDGAIDHPIFDWKSSSTS 500

Query: 349 KQDDAR-SFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTS 407
           +QDD R S +LLGSTP+PSSKS + SITPPEAWGGE+LSDKFA  RQ  N+PSR+GM T+
Sbjct: 501 RQDDTRASLSLLGSTPAPSSKSGEDSITPPEAWGGERLSDKFAHHRQSANLPSRFGMLTT 560

Query: 408 SGLTSSSMYSGLQD--VSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSS 465
           SGLTS SM SGLQD  VS SQTS+SSL++SNL   N+R KDV+S QET SLGF EH+  S
Sbjct: 561 SGLTSGSMLSGLQDLSVSTSQTSMSSLSNSNLGYANLRPKDVSSSQET-SLGFSEHVPFS 619

Query: 466 FPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSPK 519
             S+SLGTKG+ G  NL+   P+SL L    PRR  TYAERI TTS    G SLS+GSPK
Sbjct: 620 SISMSLGTKGVTGQTNLELPGPTSLNL----PRRFSTYAERIGTTSSFSDGISLSMGSPK 675

Query: 520 TKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSP-QPDPPQGSNFTLQL 578
           TKK+GAET+EELL + LSR+D S  +EPGI P+INGG SQ  K+P Q D  QG++FTLQL
Sbjct: 676 TKKSGAETREELLHSLLSRTDISTAMEPGILPSINGGTSQPQKAPIQTDSQQGNSFTLQL 735

Query: 579 FQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTL 620
           FQRTL+ETL SFQKSIHEDM+NLHIEILRQFH+QE  M   +
Sbjct: 736 FQRTLDETLGSFQKSIHEDMKNLHIEILRQFHIQETDMSSVM 777

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086168|emb|CBI31609.3| unnamed protein product [Vitis vinifera]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/631 (73%), Positives = 521/631 (82%), Gaps = 30/631 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISL+GDLILHNLASGA+AAELKDPNEQV RVLDYSR SRHLLVTAGDDG
Sbjct: 140 MYNCKDEHLASISLNGDLILHNLASGARAAELKDPNEQVSRVLDYSRISRHLLVTAGDDG 199

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++H+WDTTGRSPKVSWLKQHSAPTAG+SFS S+DKIIA+VGLDKKLYT+D GSRRPSSCI
Sbjct: 200 SIHMWDTTGRSPKVSWLKQHSAPTAGVSFSPSNDKIIATVGLDKKLYTFDTGSRRPSSCI 259

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
            YEAPFSSLAF DD  IL AGTSNGRVVFYD+RGKPQP TVLRA SSSEAV+SLCWQR+K
Sbjct: 260 PYEAPFSSLAFRDDGLILAAGTSNGRVVFYDVRGKPQPFTVLRAYSSSEAVTSLCWQRSK 319

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV ++E+ C  ETALLGGAV DSILMPDPLPSVT+SS+SLSTA+  SR   RSGPS E S
Sbjct: 320 PVIVNESNCTPETALLGGAVEDSILMPDPLPSVTSSSLSLSTAIPASRNPGRSGPSTETS 379

Query: 240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWD 299
           SLT                 G LARLHAPRS+YNFKDDMEVFSPLVD+QPITPSLDKLWD
Sbjct: 380 SLTAA--------------SGTLARLHAPRSNYNFKDDMEVFSPLVDIQPITPSLDKLWD 425

Query: 300 GHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDAR-SFAL 358
            HE AKKDHLP+DKKPSS+LFPSSSRRFP+ +DG+ +H +FDWKSSSTS+QDD R S +L
Sbjct: 426 NHEAAKKDHLPVDKKPSSLLFPSSSRRFPFVDDGAIDHPIFDWKSSSTSRQDDTRASLSL 485

Query: 359 LGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSG 418
           LGSTP+PSSKS + SITPPEAWGGE+LSDKFA  RQ  N+PSR+GM T+SGLTS SM SG
Sbjct: 486 LGSTPAPSSKSGEDSITPPEAWGGERLSDKFAHHRQSANLPSRFGMLTTSGLTSGSMLSG 545

Query: 419 LQD--VSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGI 476
           LQD  VS SQTS+SSL++SNL   N+R KDV+S QET SLGF EH+  S  S+SLGTKG+
Sbjct: 546 LQDLSVSTSQTSMSSLSNSNLGYANLRPKDVSSSQET-SLGFSEHVPFSSISMSLGTKGV 604

Query: 477 LGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSPKTKKTGAETKEE 530
            G  NL+   P+SL L    PRR  TYAERI TTS    G SLS+GSPKTKK+GAET+EE
Sbjct: 605 TGQTNLELPGPTSLNL----PRRFSTYAERIGTTSSFSDGISLSMGSPKTKKSGAETREE 660

Query: 531 LLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSP-QPDPPQGSNFTLQLFQRTLEETLDS 589
           LL + LSR+D S  +EPGI P+INGG SQ  K+P Q D  QG++FTLQLFQRTL+ETL S
Sbjct: 661 LLHSLLSRTDISTAMEPGILPSINGGTSQPQKAPIQTDSQQGNSFTLQLFQRTLDETLGS 720

Query: 590 FQKSIHEDMRNLHIEILRQFHMQEVCMCCTL 620
           FQKSIHEDM+NLHIEILRQFH+QE  M   +
Sbjct: 721 FQKSIHEDMKNLHIEILRQFHIQETDMSSVM 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101047|ref|XP_002312120.1| predicted protein [Populus trichocarpa] gi|222851940|gb|EEE89487.1| predicted protein [Populus trichocarpa]

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/624 (72%), Positives = 516/624 (82%), Gaps = 23/624 (3%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDLILHNLASGA+A ELKDPN+QVLRVLDYSR SRHLLVTAGDDG
Sbjct: 141 MYNCKDEHLASISLSGDLILHNLASGARATELKDPNKQVLRVLDYSRVSRHLLVTAGDDG 200

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++HLWDTTGRSPKVSW KQHSAPTAGISFS S+DKIIASVGLDKKLYTYD GSRR +S I
Sbjct: 201 SVHLWDTTGRSPKVSWSKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDSGSRRHTSLI 260

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSL+F DD W+L AGTS+GRVVFYD+RGKPQP TVLRA  SSEAV+ LCWQR+K
Sbjct: 261 SYEAPFSSLSFRDDGWVLAAGTSSGRVVFYDVRGKPQPFTVLRAYGSSEAVTGLCWQRSK 320

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV ++E+ C AE ALLGGAV DSILMPDPLPSVT+SSV+LS+    +   +  GP++   
Sbjct: 321 PVIVNESNCTAEIALLGGAVDDSILMPDPLPSVTSSSVALSSVSGSA---TVGGPASSIP 377

Query: 240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWD 299
           +L++    EETP RS+L P G L RL+ PRSSYNFKD+MEVFSPLVDVQPITPSLDK W 
Sbjct: 378 NLSL---AEETPHRSHLWP-GTLTRLNPPRSSYNFKDEMEVFSPLVDVQPITPSLDKFWT 433

Query: 300 GHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSF-AL 358
            HEG KKD+LP+DKKPSS+LFPSSSRRFP+AEDG+N+H +FDWKSSSTS+QDD +SF +L
Sbjct: 434 DHEGLKKDNLPVDKKPSSLLFPSSSRRFPFAEDGTNDHPIFDWKSSSTSRQDDTQSFTSL 493

Query: 359 LGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSG 418
            GSTP+PSSKSEDSSITPPEAWGGE+LSDK A LRQPLN+P R+   TS   TS SM+S 
Sbjct: 494 GGSTPTPSSKSEDSSITPPEAWGGERLSDKIAHLRQPLNLPPRF-GMTSGSSTSGSMFSS 552

Query: 419 LQDVSLSQTSISSLTDSNLSR--ENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGI 476
           LQD+  S +  S  + ++ SR   N+R +DV+  QET S+GFPEH+SSS   LSLG KGI
Sbjct: 553 LQDLPSSTSQSSMSSLTSSSRGFSNLRARDVSLTQET-SVGFPEHISSSSMFLSLGAKGI 611

Query: 477 LGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSPKTKKTGAETKEE 530
            G  NL++S P+SL L    PRR  TYAERISTTS    GTSLSVGSPKTKKTG ET+EE
Sbjct: 612 TGPANLETSGPASLNL----PRRFSTYAERISTTSSFSDGTSLSVGSPKTKKTGVETREE 667

Query: 531 LLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSF 590
           LL++ L RSD  AV EPGI PA+NGG +Q  K+ QPD  QGS+FTLQLFQRTLEETLDSF
Sbjct: 668 LLNSLLLRSDALAVTEPGIVPAMNGGATQPHKALQPDTQQGSSFTLQLFQRTLEETLDSF 727

Query: 591 QKSIHEDMRNLHIEILRQFHMQEV 614
           QKSIHEDMRNLHIEILRQFHMQE+
Sbjct: 728 QKSIHEDMRNLHIEILRQFHMQEM 751

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109450|ref|XP_002315198.1| predicted protein [Populus trichocarpa] gi|222864238|gb|EEF01369.1| predicted protein [Populus trichocarpa]

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/635 (69%), Positives = 511/635 (80%), Gaps = 32/635 (5%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDLILHNLASGA+A ELKDP+EQVLRVLDYSR SRHLLVTAGDDG
Sbjct: 141 MYNCKDEHLASISLSGDLILHNLASGARATELKDPHEQVLRVLDYSRVSRHLLVTAGDDG 200

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++HLWD T RSPKVSWLKQHSAPT GISFS S+DKIIASVGLDKKLYTY+ GSRR +S I
Sbjct: 201 SVHLWDITSRSPKVSWLKQHSAPTVGISFSPSNDKIIASVGLDKKLYTYESGSRRHTSLI 260

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSLAF DD  IL AGTS+GRVVFYD+RGKPQP TVL A  SSEAV+SLCWQR+K
Sbjct: 261 SYEAPFSSLAFRDDGLILAAGTSSGRVVFYDVRGKPQPFTVLHAYGSSEAVTSLCWQRSK 320

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVT----TSSVSLSTAVSGSRPNSRSGPS 235
           PV ++E+TC  E ALLGGAV DSILMPDPLPSVT    +   S  TA++       SGP+
Sbjct: 321 PVIVNESTCTPEIALLGGAVDDSILMPDPLPSVTSSSLSIESSSLTAIT-------SGPA 373

Query: 236 AEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLD 295
           +  S+LT+    EETP +S+L P G L +L+ PRSSYNFKD+MEVFSPL DVQPITPSLD
Sbjct: 374 STMSNLTL---AEETPHQSHLWP-GTLMKLN-PRSSYNFKDEMEVFSPLADVQPITPSLD 428

Query: 296 KLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARS 355
           K WD  EG KKD+L +DKKPSS+LFPSS RRFP+ EDG N+H +FDWKSSSTS+QD+ARS
Sbjct: 429 KFWDDQEGLKKDNLSVDKKPSSLLFPSSIRRFPFQEDGINDHPIFDWKSSSTSRQDEARS 488

Query: 356 FAL-LGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSS 414
           F L  GSTPSPSSKSEDSSITPPEAWGGE+LSD  A L QPLN+PSR+ M++ S  T  S
Sbjct: 489 FTLPGGSTPSPSSKSEDSSITPPEAWGGERLSDSIAHLPQPLNLPSRFAMTSGSS-TLGS 547

Query: 415 MYSGLQDVSLS--QTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLG 472
           M+S LQD+S S  QT  SSL +S+ S  N+ T+DV+  QET S+GFPEH+SSS  SLSLG
Sbjct: 548 MFSSLQDLSSSTNQTGTSSLNNSSCSFSNLHTRDVSLNQET-SMGFPEHISSSSMSLSLG 606

Query: 473 TKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSPKTKKTGAE 526
           TK I    +L++S P+SL     +PRR  T+AERI+TT+    GTSLSV SPKTKKTG E
Sbjct: 607 TKHITELASLEASGPASL----NQPRRFSTFAERINTTASFSDGTSLSVVSPKTKKTGVE 662

Query: 527 TKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEET 586
           T+EELL++ LSRSD  AV EPGI PA+NGG +Q  K  QPD  QGS+FTLQLFQRTLEET
Sbjct: 663 TREELLNSILSRSDALAVTEPGILPAMNGGATQPHKILQPDTQQGSSFTLQLFQRTLEET 722

Query: 587 LDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLD 621
           LDSFQKSIHEDMR+LHIEILRQFHMQE+ +   ++
Sbjct: 723 LDSFQKSIHEDMRSLHIEILRQFHMQEMELSGVMN 757

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441356|ref|XP_004138448.1| PREDICTED: protein NEDD1-like [Cucumis sativus] gi|449495290|ref|XP_004159790.1| PREDICTED: protein NEDD1-like [Cucumis sativus]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/633 (71%), Positives = 514/633 (81%), Gaps = 27/633 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDLILHNLASGA+AAELKDPNEQVLRVLDYSR SRHLLVTAGDDG
Sbjct: 143 MYNCKDEHLASISLSGDLILHNLASGARAAELKDPNEQVLRVLDYSRTSRHLLVTAGDDG 202

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T+HLWDTTGR+PK+SW KQHSAPTAGI FS S+DK  ASVGLDKKLYTYD GSRRPSS I
Sbjct: 203 TVHLWDTTGRNPKISWQKQHSAPTAGIGFSPSNDKSFASVGLDKKLYTYDSGSRRPSSFI 262

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
            YEAPFSS+AF DD  IL AGTSNGRVVFYD+RGKP+P  VLRA SSSEAV+SL WQR K
Sbjct: 263 AYEAPFSSMAFRDDGLILAAGTSNGRVVFYDVRGKPEPYIVLRAYSSSEAVTSLSWQRLK 322

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV ++E+ C AE ALLGGA+ DSILMPDPLPSVTTS+  LS A SGSR   RSG + EAS
Sbjct: 323 PVIVNESNCTAEVALLGGAIEDSILMPDPLPSVTTSTGPLS-ATSGSRNPGRSGSTFEAS 381

Query: 240 SLTVG---GTGEETPQRSYLRPGG--PLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL 294
                    T EETP RS+LR GG   LARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL
Sbjct: 382 LTETSSSFSTAEETPLRSHLRSGGSLALARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL 441

Query: 295 DKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDAR 354
           DKLWD H G+KKD+ P DKKP SMLFPSSSRRF   EDG+++H +F+WKSSS SKQDD R
Sbjct: 442 DKLWDDHNGSKKDN-PFDKKPLSMLFPSSSRRFSSIEDGASDHPIFNWKSSS-SKQDDIR 499

Query: 355 SFA-LLGSTPSPS--SKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGM--STSSG 409
           S +  LGSTP+P+  SK+EDSSITPPEAWGGEKLS+KFA LRQP+ +PSR+GM  S+SS 
Sbjct: 500 SSSGQLGSTPAPTVNSKNEDSSITPPEAWGGEKLSEKFAQLRQPMTLPSRFGMLASSSSS 559

Query: 410 LTSSSMYSGLQD--VSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFP 467
            TSSSM SGLQD   S+SQ+SI+SLT+ N S  N+RTKD TS QE  SL  PEH S++  
Sbjct: 560 QTSSSMISGLQDPSSSISQSSITSLTNLNFSYPNLRTKDATS-QEV-SLSIPEHFSTTAA 617

Query: 468 SLSLGTKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTSGTS--LSVGSPKTKKT 523
           SLSLGT+  +G  N DS RPS++TL    PRR  TYAER+STTS  S  L  GSPKTKK 
Sbjct: 618 SLSLGTRVNIGLSNTDSPRPSTMTL----PRRFSTYAERLSTTSSFSDGLPAGSPKTKKL 673

Query: 524 GAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTL 583
           G+ET+EE+L+N L++ DT +V E GIPPA+NGG+ Q  K  Q D  QG++FTLQLFQRTL
Sbjct: 674 GSETREEVLNN-LAKFDTLSVTESGIPPAMNGGLLQPQKPLQSDAQQGNSFTLQLFQRTL 732

Query: 584 EETLDSFQKSIHEDMRNLHIEILRQFHMQEVCM 616
           EETLDSFQ+SIH+DMRNLH+EILRQFHMQE+ M
Sbjct: 733 EETLDSFQRSIHDDMRNLHLEILRQFHMQEMEM 765

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499133|ref|XP_003518397.1| PREDICTED: protein NEDD1-like [Glycine max]

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/645 (67%), Positives = 503/645 (77%), Gaps = 40/645 (6%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDL+LHNLASG KAAELKDPN+Q+LRVLDYSR SRHLL+TAGDDG
Sbjct: 140 MYNCKDEHLASISLSGDLMLHNLASGQKAAELKDPNQQMLRVLDYSRVSRHLLLTAGDDG 199

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T+HLWDTTGRSPKVSW+KQHSAPTAGISFS S+DKIIASVGLDKK+Y YD GSRRPSS I
Sbjct: 200 TVHLWDTTGRSPKVSWIKQHSAPTAGISFSPSNDKIIASVGLDKKMYIYDSGSRRPSSYI 259

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSLAF DD W+L AGTSNGRV FYD+RGKPQP+ VL A  SSEAV+SLCWQR+K
Sbjct: 260 SYEAPFSSLAFRDDGWMLAAGTSNGRVAFYDVRGKPQPVAVLHAYGSSEAVTSLCWQRSK 319

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV +DE  C AETAL+G  V DSILMPDPLPS T+S+ SLST+VS +R + R G S + S
Sbjct: 320 PVVVDERNCSAETALVGDTVEDSILMPDPLPSATSSNNSLSTSVSSTRNSGRLGASFDGS 379

Query: 240 SLTVGGTG-----------EETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
           SLT  G+G           EETPQR++L PGG L+RLHAPR+SYNFKDDMEVFSPLVDVQ
Sbjct: 380 SLTASGSGFTSNILNVSTAEETPQRNHLWPGGTLSRLHAPRASYNFKDDMEVFSPLVDVQ 439

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           P+ PS   LWD   G KKD+L  D+KP  +LFPSSSRRF  +ED +++H V DWKS ST+
Sbjct: 440 PLAPS---LWD-ENGIKKDNLFADRKP--LLFPSSSRRFSNSEDVTSDHPVSDWKSGSTA 493

Query: 349 KQDDAR-SFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTS 407
           KQD A+ SF L+GSTP PSSK+EDSSITPPEAWGGE+LSDK+A  RQP+N PSR+GM  S
Sbjct: 494 KQDIAQSSFPLVGSTPPPSSKNEDSSITPPEAWGGERLSDKYAYTRQPVNAPSRFGMLAS 553

Query: 408 SGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFP 467
           +G T+ SM SGLQD S S   +SS T S+LS  N+R KD +S QET SLGF +H+ S+  
Sbjct: 554 AGQTAGSMLSGLQDTS-SSVGVSSYTSSSLSFANLRAKDASSSQET-SLGFTDHMFSTSL 611

Query: 468 SLSLGTKGILGSG-----NLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVG 516
            +S+ TK  LG        LDS R SS        RR  TYAERISTTS    G SLSVG
Sbjct: 612 PMSINTKTSLGQAIDSPKILDSPRMSSFN------RRFSTYAERISTTSTLSDGVSLSVG 665

Query: 517 SPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTL 576
           SPK KK+GAET+EELL++ L +SD SA +E G  P  +G +SQ  K+ QPD  QGS+FTL
Sbjct: 666 SPKIKKSGAETREELLNSLLLKSDISAPIESGSLPLTSGVISQP-KASQPD-AQGSSFTL 723

Query: 577 QLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLD 621
           QLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQE  M   ++
Sbjct: 724 QLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETEMSAVMN 768

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553817|ref|XP_003545248.1| PREDICTED: protein NEDD1-like [Glycine max]

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/646 (67%), Positives = 501/646 (77%), Gaps = 43/646 (6%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDL+LHNLASG KAAELKDPN+Q+LRVLDYSR SRHLLVTAGDDG
Sbjct: 192 MYNCKDEHLASISLSGDLMLHNLASGQKAAELKDPNQQMLRVLDYSRVSRHLLVTAGDDG 251

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T+HLWDTTGRSPKVSW+K HSAPTAGISFS S+DKIIASVGLDKK+Y YD GSRRPSS I
Sbjct: 252 TVHLWDTTGRSPKVSWIKPHSAPTAGISFSPSNDKIIASVGLDKKMYIYDSGSRRPSSYI 311

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSLAF DD W+L AGTSNGRV FYD+RGKPQP+ VL A  SSEAV+SLCWQR+K
Sbjct: 312 SYEAPFSSLAFRDDGWMLAAGTSNGRVAFYDVRGKPQPVAVLHAYGSSEAVTSLCWQRSK 371

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV +DE  C AETAL+G  V DSILMPDPLPS T+S+ SLST+V+ +R +   G S + S
Sbjct: 372 PVVVDERNCSAETALVGDTVEDSILMPDPLPSATSSNNSLSTSVASTRNSGWLGASFDGS 431

Query: 240 SLTVGGTG-----------EETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
           SL   G+G           EETPQR++L PGG L+RLHAPR+SYNFKDDMEVFSPLVDVQ
Sbjct: 432 SLMASGSGFTSSILNASTAEETPQRNHLWPGGTLSRLHAPRASYNFKDDMEVFSPLVDVQ 491

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           P+TPS   LWD   G KKD+L  D+KP  +LFPSSSRRF  +EDG+++H + DWKS ST+
Sbjct: 492 PLTPS---LWD-ENGIKKDNLFSDRKP--LLFPSSSRRFSNSEDGTSDHPISDWKSGSTT 545

Query: 349 KQDDAR-SFALLGST-PSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMST 406
           KQD  + SF L+GST P PSSK+EDSSITPPEAWGGE+LSDK+A  RQP+N PSR+G+  
Sbjct: 546 KQDITQSSFPLVGSTPPPPSSKNEDSSITPPEAWGGERLSDKYAYTRQPVNAPSRFGVLA 605

Query: 407 SSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSF 466
           S+G T+ SM SGLQD S S   +SS T S+LS  N+R KD +S QET SLGF +H+ S+ 
Sbjct: 606 SAGQTAGSMLSGLQDTS-SSVGVSSYTSSSLSFANLRAKDASSSQET-SLGFTDHMFSA- 662

Query: 467 PSLSLGTKGILGSG-----NLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSV 515
             +S+ TK  LG        LDS R SS        RR  TYAERISTTS    G SLSV
Sbjct: 663 -PMSINTKTSLGQAIDSPKILDSPRMSSFN------RRFSTYAERISTTSTLSDGVSLSV 715

Query: 516 GSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFT 575
           GSPK KK+GAET+EELL++ L +SD SA +E G  P  +G +SQ  K+ QPD  QGS+FT
Sbjct: 716 GSPKIKKSGAETREELLNSLLLKSDISAPIESGSLPLTSGIISQP-KASQPD-AQGSSFT 773

Query: 576 LQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLD 621
           LQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQE  M   ++
Sbjct: 774 LQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETEMSAVMN 819

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492447|ref|XP_003616512.1| Protein NEDD1 [Medicago truncatula] gi|355517847|gb|AES99470.1| Protein NEDD1 [Medicago truncatula]

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/633 (66%), Positives = 486/633 (76%), Gaps = 27/633 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDLILHNLASG +AAELKDPN+Q+LRVLDYSR SRHLL TAGDDG
Sbjct: 142 MYNCKDEHLASISLSGDLILHNLASGQRAAELKDPNQQMLRVLDYSRVSRHLLTTAGDDG 201

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T+HLWDTTGRSPKVSWLKQHSAPTAGISFS S+DKIIASVGLDKKLYTYD GSRRP+SCI
Sbjct: 202 TVHLWDTTGRSPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDSGSRRPTSCI 261

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           + EAPFSSLAF DD W+L AGTSNGRV FYD+RGKPQP  VL A  SSEAV+SLCWQR+K
Sbjct: 262 SCEAPFSSLAFRDDGWMLAAGTSNGRVAFYDVRGKPQPFGVLHAYGSSEAVTSLCWQRSK 321

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV +DE  C AE AL+G +V DSILMPDPLPS T+SS+S ST+VS +  + R   S + S
Sbjct: 322 PVIVDERNCTAEIALVGDSVEDSILMPDPLPSATSSSISQSTSVSSTWNSGRLSTSIDTS 381

Query: 240 SLTV--GG---------TGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
           SL    GG         TGEETP R++L PGG L+RLHAPR SYNFKDDMEVFSP+VDV 
Sbjct: 382 SLATSSGGFITSLQNVSTGEETPLRNHLWPGGTLSRLHAPRGSYNFKDDMEVFSPIVDVT 441

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           P+TPS   LWD   G KKD L  D+KP  MLFPS+SRRFP +ED S++HS+ DWKS  T+
Sbjct: 442 PLTPS---LWD-ENGVKKDSLFSDRKP--MLFPSASRRFPSSEDVSSDHSIADWKSGPTA 495

Query: 349 KQDDAR-SFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTS 407
           KQD  + SF L+G TP  S+KSE+SSITPPEAWGGEKL DK+   RQP+N PSR+GM  S
Sbjct: 496 KQDITQSSFPLVGLTPPASAKSEESSITPPEAWGGEKLPDKYTYTRQPVNAPSRFGMLAS 555

Query: 408 SGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFP 467
           SG T+ SM SGLQD + S + ISS T S+L+  N+RTKDV++ QET SLGF +HL S+  
Sbjct: 556 SGQTAGSMISGLQD-TFSSSGISSYTSSSLNFSNLRTKDVSTGQET-SLGFTDHLFSTSM 613

Query: 468 SLSLGTKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS--GTSLSVGSPKTKKT 523
            LS+ TK  LG  N+DS + S         +R  +YAERI T S  G   SVGSPK KK+
Sbjct: 614 PLSISTKTSLGQANIDSPKISDSPRMSSFSKRISSYAERIGTASSFGDGASVGSPKIKKS 673

Query: 524 GAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTL 583
           GAET+EELL++ L +SD S   E G     NG + Q  K+ Q D  QGS+FTLQLFQRTL
Sbjct: 674 GAETREELLNSLLLKSDVSIPTESGSLLLPNGTIPQQ-KASQSD-AQGSSFTLQLFQRTL 731

Query: 584 EETLDSFQKSIHEDMRNLHIEILRQFHMQEVCM 616
            ETLDSFQKSIHED+RN+H+EILRQFH+QEVC+
Sbjct: 732 NETLDSFQKSIHEDVRNVHLEILRQFHLQEVCI 764

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459552|ref|XP_002284487.1| PREDICTED: protein NEDD1-like [Vitis vinifera]

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/624 (66%), Positives = 476/624 (76%), Gaps = 27/624 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYN KDEHLASISL+G LILHNLASGAK AELKDPN+QVLRVLDYSR SRHLLVTAGDDG
Sbjct: 143 MYNYKDEHLASISLNGVLILHNLASGAKVAELKDPNQQVLRVLDYSRISRHLLVTAGDDG 202

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++HLWDTTG SPKVSWLKQHSAPTAG++FS S+DK+IASVGLDKKLYT+D GSRRPS CI
Sbjct: 203 SIHLWDTTGHSPKVSWLKQHSAPTAGVTFSPSNDKMIASVGLDKKLYTFDRGSRRPSFCI 262

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
            YE PFSSLAF DD W L AGTS+G+VVFYD+RGKPQP ++L A  +SEAV+SLCWQR+K
Sbjct: 263 PYEMPFSSLAFRDDGWTLAAGTSHGQVVFYDVRGKPQPFSILCAYGNSEAVTSLCWQRSK 322

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV +DE+ C  E AL+GGA  DS+++PDPLPSVT+SS+SLS A+ GS+   R GPS EAS
Sbjct: 323 PVIVDESNCSPEIALMGGATEDSVIIPDPLPSVTSSSLSLSMALPGSQNPGRIGPSTEAS 382

Query: 240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWD 299
           SLT      ETP RS+LR GG LA+L AP S Y FKDDMEVFSPLVDVQP+TP+LDKLWD
Sbjct: 383 SLT------ETPSRSHLRLGGTLAKLRAPHSGYTFKDDMEVFSPLVDVQPLTPTLDKLWD 436

Query: 300 GHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALL 359
            HEGAKKD+LP DKKPSS LF S SRR   AE   N H +F+WKS+STS+QD   S    
Sbjct: 437 DHEGAKKDYLPFDKKPSS-LFSSPSRRSSIAEGEGNNHPIFNWKSNSTSRQDTHASLTAP 495

Query: 360 GSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGL 419
           GS+ + S KSEDSSITPP+AWGGE+ SDKF   RQP    SR+GM  +SGL S SM+SGL
Sbjct: 496 GSSTTSSFKSEDSSITPPKAWGGERFSDKFTHHRQP--TLSRFGMLAASGLASGSMFSGL 553

Query: 420 QDV--SLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGIL 477
           Q++  S S  S SS ++ NL+  N+R KD +  QET  LG PE+  S   SL L TK + 
Sbjct: 554 QELWSSTSHMSGSSSSNQNLTFGNLRAKDFSFNQET-PLGVPENFPSISVSLPLDTKAVT 612

Query: 478 GSGNLD-SSRPSSLTLTHREPRR--TYAERISTT----SGTSLSVGSPKTKKTGAETKEE 530
              NL+    P+SLTL    PRR  TYAERISTT     GTS  VGSPK KKTGAET+ E
Sbjct: 613 RQANLELPGSPASLTL----PRRFSTYAERISTTLSSSDGTS-PVGSPKIKKTGAETRAE 667

Query: 531 LLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSP-QPDPPQGSNFTLQLFQRTLEETLDS 589
           +L N L  S TSA  E G  P +NGG S S K P Q D  QG++FTLQ+FQ TLEETLDS
Sbjct: 668 IL-NGLFNSVTSAASEAGTHPMVNGGTSLSQKGPSQSDTQQGTSFTLQMFQSTLEETLDS 726

Query: 590 FQKSIHEDMRNLHIEILRQFHMQE 613
           FQKSIH+DMRNLHIEILRQFH+QE
Sbjct: 727 FQKSIHKDMRNLHIEILRQFHIQE 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566510|ref|XP_002524240.1| protein with unknown function [Ricinus communis] gi|223536517|gb|EEF38164.1| protein with unknown function [Ricinus communis]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/636 (70%), Positives = 512/636 (80%), Gaps = 32/636 (5%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           +YNCKDEHLASISL+GDLILHNLASGA+AAELKDPNEQVLRVLDYSR SRHLLVTAGDDG
Sbjct: 140 LYNCKDEHLASISLNGDLILHNLASGARAAELKDPNEQVLRVLDYSRISRHLLVTAGDDG 199

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++HLWDTTGR+PKVSWLKQHSAPTAGISFS S+DKIIASVGLDKKLYT+D GSRRPSSCI
Sbjct: 200 SVHLWDTTGRNPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTFDAGSRRPSSCI 259

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSLAF DD  IL AGTS+GRVVFYD+RGKPQP  VLRA SSSEAV+SLCWQR+K
Sbjct: 260 SYEAPFSSLAFRDDGLILAAGTSSGRVVFYDVRGKPQPFNVLRAFSSSEAVTSLCWQRSK 319

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSR-------- 231
           PV ++E+ C AETALLGGA+ DSILMPDPLPSVT SSVSLST VS SR   R        
Sbjct: 320 PVVVNESNCTAETALLGGAIEDSILMPDPLPSVTLSSVSLSTVVSSSRNTGRSSLSIESS 379

Query: 232 ---SGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
              S  S  ASS+      EETP R++L  GG L+RL+APRSSYNFKDDM+VFSP+VDVQ
Sbjct: 380 SLTSTSSGSASSIASLSLAEETPHRNHLWLGGTLSRLNAPRSSYNFKDDMDVFSPVVDVQ 439

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           PITPSLDKLW  +EGAKKD+L +DKKPSS+   SSSRRFP++EDG+N+H +FDWK+SSTS
Sbjct: 440 PITPSLDKLWGDNEGAKKDNLSVDKKPSSLF-SSSSRRFPFSEDGANDHPIFDWKTSSTS 498

Query: 349 KQDDAR-SFALL-GSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMST 406
           +QD+ R S +LL GSTPSPSS SE+SSITPPEAWGGE+LSDK A  RQPL   SR+GM  
Sbjct: 499 RQDETRSSLSLLGGSTPSPSSNSEESSITPPEAWGGERLSDKLAHQRQPL---SRFGMLA 555

Query: 407 SSGLTSSSMYSGLQDV--SLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSS 464
           S GLTS S++SGLQD+  S SQT +SSL  S  S  N+RTKD++  QET + G PE+ +S
Sbjct: 556 SGGLTSGSLFSGLQDLSSSTSQTIMSSLASSYFSFPNIRTKDISINQETLT-GLPENNTS 614

Query: 465 SFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSP 518
           S  S SLGTK  +G  + D   P   TL    PR+  +YAER ST S    GTS +V SP
Sbjct: 615 SI-SQSLGTKSNIGPADADLPGPGIFTL----PRKLSSYAERTSTVSSFGDGTSPAVNSP 669

Query: 519 KTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQL 578
           K KKTGAET+EELLS+ LSRSDT A  E G  P +NGGMSQ+ K+ Q DP QGS+FTLQL
Sbjct: 670 KMKKTGAETREELLSSLLSRSDTLAGTESGNLPIMNGGMSQANKALQLDPQQGSSFTLQL 729

Query: 579 FQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEV 614
           FQRTL+ETLDSFQKSIHEDMRNLHIEILRQFHMQE+
Sbjct: 730 FQRTLQETLDSFQKSIHEDMRNLHIEILRQFHMQEM 765

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	633
TAIR|locus:2153629	782	NEDD1 "AT5G05970" [Arabidopsis	0.933	0.755	0.515	3.3e-150
UNIPROTKB|Q3B7M6	659	NEDD1 "Protein NEDD1" [Bos tau	0.262	0.251	0.329	6.3e-27
UNIPROTKB|E2R5C6	734	NEDD1 "Uncharacterized protein	0.262	0.226	0.317	6e-26
UNIPROTKB|Q8NHV4	660	NEDD1 "Protein NEDD1" [Homo sa	0.262	0.251	0.317	1.4e-25
UNIPROTKB|G3V3F1	667	NEDD1 "Neural cell expressed,	0.262	0.248	0.317	1.4e-25
RGD|1307750	659	Nedd1 "neural precursor cell e	0.262	0.251	0.305	6.6e-25
MGI|MGI:97293	660	Nedd1 "neural precursor cell e	0.262	0.251	0.305	1.1e-24
UNIPROTKB|F1P0W9	671	NEDD1 "Uncharacterized protein	0.252	0.238	0.333	1.4e-24
UNIPROTKB|F1SQR9	390	NEDD1 "Uncharacterized protein	0.262	0.425	0.323	1.4e-19
ZFIN|ZDB-GENE-040426-2906	677	nedd1 "neural precursor cell e	0.260	0.243	0.327	9.2e-19

TAIR|locus:2153629 NEDD1 "AT5G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
 Identities = 327/634 (51%), Positives = 396/634 (62%)

Query:     1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
             MYNCKDEHLAS+S+ GDLI+HNLASGA+A ELKDPN QVLR+LDYSR+SRHLLVTAGDDG
Sbjct:   142 MYNCKDEHLASVSVGGDLIVHNLASGARATELKDPNGQVLRLLDYSRSSRHLLVTAGDDG 201

Query:    61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
             T+HLWDTTGRSPK+SWLKQHSAPTAG+ FS S++KIIASVG+DKKLYTYD GSRR SSCI
Sbjct:   202 TVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIASVGMDKKLYTYDSGSRRSSSCI 261

Query:   120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
              YEAPFSSLAF D+ +IL AGTSNGRVVFYDIRGKPQP+TVL A S+SE V+SL WQ +K
Sbjct:   262 AYEAPFSSLAFGDNGYILVAGTSNGRVVFYDIRGKPQPVTVLHAFSNSEDVTSLSWQTSK 321

Query:   180 PVFIDETTCKAETALLGGAVGDSILMPDPLPXXXXXXXXXXXXXXXXXXXXXXXXXAEAS 239
             PV ++E    +E ALLG  V DS+++PDPLP                           AS
Sbjct:   322 PVIVNEKNYTSEMALLGSTVEDSVVIPDPLPSTTPSASQSAMAPGSRGVSAST---VNAS 378

Query:   240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWD 299
             S+      E+TP R++L P GPL RLHA R++ ++ DDM VFSP++DV     S++K W 
Sbjct:   379 SV------EQTPNRNHLWPSGPLGRLHALRANDSYNDDMGVFSPIIDVS----SVEK-WA 427

Query:   300 GHEGAK-KDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARS-FA 357
               EG   KDHL +D KPSS+LFPSSS+ + + ++GS EH +FDWK SSTSKQDD R+ F+
Sbjct:   428 DSEGYNNKDHLVVDNKPSSLLFPSSSKGYSFGDNGSKEHPIFDWKPSSTSKQDDPRAAFS 487

Query:   358 LLGXXXXXXXXXXXXXXXXX-EAWGGEKLSDKFALLRQP--------LNMPSRXXXXXXX 408
               G                  EAWGG+K S+KF  L           L+ PSR       
Sbjct:   488 SFGSITPTASSKSEDSALTPPEAWGGDKFSEKFNQLANEKFSDKFSHLHAPSRLAVSSTG 547

Query:   409 XXXXXXXXXXXQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPS 468
                        +D  LS    +    +N S E  R +D +S  ETSS        ++ PS
Sbjct:   548 ASTSGSMFSSSRDFPLSHGQTNF---ANASLEFPRIRDFSSTFETSST----QTDNNLPS 600

Query:   469 LSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERIXXXXXXXXXXX-----XPXXXXX 523
               L TKGI   GN+DS R S    T R    TYAERI                 P     
Sbjct:   601 SPLFTKGITAPGNIDSLRLSP-NFTRRFS--TYAERISTTSSFSDGASLSLGGSPKIKKT 657

Query:   524 XXXXXXXLLSNFLSRSDTSAVVEPGIPPAIN-GGMSQSLKSPQPDPPQGSNFTLQLFQRT 582
                    +L++ L+R +T    E G  P +N GG+ QS ++ Q      SNFTLQLFQRT
Sbjct:   658 GSETREEVLNHLLARPETVVATEAGAMPLMNQGGLKQS-QTDQQQVMGSSNFTLQLFQRT 716

Query:   583 LEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCM 616
             LE TLDSFQ SIH+D+RNLHIEILRQFHM E+ M
Sbjct:   717 LEGTLDSFQNSIHDDVRNLHIEILRQFHMHEMEM 750

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000919 "cell plate assembly" evidence=IMP

GO:0005828 "kinetochore microtubule" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0032467 "positive regulation of cytokinesis" evidence=IMP

GO:0060236 "regulation of mitotic spindle organization" evidence=IMP

GO:2000694 "regulation of phragmoplast microtubule organization" evidence=IMP

UNIPROTKB|Q3B7M6 NEDD1 "Protein NEDD1" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 6.3e-27, Sum P(2) = 6.3e-27
 Identities = 55/167 (32%), Positives = 95/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSIRHLKYSLFKKSLLGSVSDNGI 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  ++   H AP +GI FS  ++++  +VGLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSPYHNFDSTHKAPASGICFSPVNELLFVTVGLDKRIILYDTSSKKLVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              +AP +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADAPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPIKTISAHKTS 293

GO:0045177 "apical part of cell" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|E2R5C6 NEDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
 Identities = 53/167 (31%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   203 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 262

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  ++   H AP +GI FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   263 VTLWDVNSQSPYHNFDSTHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 322

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   323 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 369

GO:0045177 "apical part of cell" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

UNIPROTKB|Q8NHV4 NEDD1 "Protein NEDD1" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
 Identities = 53/167 (31%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  ++   H AP +GI FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSPYHNFDSVHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 293

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|G3V3F1 NEDD1 "Neural cell expressed, developmentally down-regulated 1, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
 Identities = 53/167 (31%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   134 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 193

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  ++   H AP +GI FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   194 VTLWDVNSQSPYHNFDSVHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 253

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   254 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 300

GO:0000242 "pericentriolar material" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

RGD|1307750 Nedd1 "neural precursor cell expressed, developmentally down-regulated 1" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
 Identities = 51/167 (30%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      ++Q +R + YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHGSKQPVRHIKYSLFRKSLLGSVSDNGV 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +S   S+   H AP +G+ FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSAYHSFDSTHKAPASGLCFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADTPLTAVDFMPDGASLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 293

GO:0000242 "pericentriolar material" evidence=IEA;ISO

GO:0000922 "spindle pole" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=IEA;ISO

GO:0005932 "microtubule basal body" evidence=IEA;ISO

GO:0045177 "apical part of cell" evidence=IEA;ISO

MGI|MGI:97293 Nedd1 "neural precursor cell expressed, developmentally down-regulated gene 1" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 51/167 (30%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      ++Q +R + YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHGSKQPIRHIKYSLFRKSLLGSVSDNGV 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +S   ++   H AP +GI FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSSYHTFDSTHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 293

GO:0000242 "pericentriolar material" evidence=IDA

GO:0000922 "spindle pole" evidence=IDA

GO:0000924 "gamma-tubulin ring complex, centrosomal" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=ISO;IDA

GO:0005814 "centriole" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0007019 "microtubule depolymerization" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0031109 "microtubule polymerization or depolymerization" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0070201 "regulation of establishment of protein localization" evidence=ISO

UNIPROTKB|F1P0W9 NEDD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 248 (92.4 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 54/162 (33%), Positives = 93/162 (57%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGYNSSQPIRHLKYSSFKKSLLGSVSDSGN 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   ++P  ++   H AP + I FS  ++ ++ +VGLDK++  YD  S++  + I 
Sbjct:   187 VTLWDVNTQNPYRNFENTHKAPASEICFSPVNELLLVTVGLDKRINLYDTSSKKLLTTIV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVL 161
              + P +++ F+ D   LT G+S G++  YD+R    P+ TV+
Sbjct:   247 ADHPLTTVNFMPDGTTLTIGSSRGKICQYDLRRLTSPVKTVI 288

GO:0000242 "pericentriolar material" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

UNIPROTKB|F1SQR9 NEDD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 256 (95.2 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 54/167 (32%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  S+   H AP + I FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSPYHSFDSAHKAPASAIGFSPVNELLFVTIGLDKRIILYDTSSKKIVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              +AP +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADAPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 293

GO:0045177 "apical part of cell" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

ZFIN|ZDB-GENE-040426-2906 nedd1 "neural precursor cell expressed, developmentally down-regulated 1" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
 Identities = 55/168 (32%), Positives = 88/168 (52%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
             +N  D ++AS S SGD+ILH++ +   +      PN  +   L YS   R LL T  D G
Sbjct:   127 FNGGDSYIASGSTSGDIILHSITTNLSSKPFGHGPNVPI-HDLRYSLVKRSLLGTVSDSG 185

Query:    61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
             ++ LWD   +     +   H AP +G++FS ++D +  +VGLDKK+  YD  S+      
Sbjct:   186 SVALWDANTQKELHLFEGAHKAPCSGLAFSPANDLLFVTVGLDKKIVCYDTSSKIVFRNK 245

Query:   120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
               E+P +++ F  D   L  G++ GR+  YD+R    P+ +  A  +S
Sbjct:   246 QVESPLTAIDFTPDGAGLVVGSTQGRIYLYDLRNLSAPVKINTAHKTS 293

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=IDA

GO:0071539 "protein localization to centrosome" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	633
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-07

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 41  RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG 100
             + +S + + LL T   DGT+ +WD        + LK H+ P   ++ S+D   +AS  
Sbjct: 13  TCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-LKGHTGPVRDVAASADGTYLASGS 70

Query: 101 LDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159
            DK +  +D  +      +T + +  SS+AF  D  IL++ + +  +  +D+    + LT
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLT 129

Query: 160 VLRACSSSEAVSSLCW 175
            LR  +    V+S+ +
Sbjct: 130 TLRGHTDW--VNSVAF 143

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 36/168 (21%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 9   LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68
           L+S S    + + ++ +G     L+   + V   + +S +    + ++  DGT+ LWD  
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWV-NSVAFSPDGT-FVASSSQDGTIKLWDLR 165

Query: 69  GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFSS 127
                 + L  H+     ++FS D + + S   D  +  +D  + +    +   E   +S
Sbjct: 166 TGKCVAT-LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224

Query: 128 LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW 175
           +AF  D ++L +G+ +G +  +D+R   + +  L     + +V+SL W
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLR-TGECVQTLSG--HTNSVTSLAW 269

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 13/179 (7%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
             +    +LAS S    + L +L +G     L      V  V  +S     +L ++  D 
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-AFS-PDGRILSSSSRDK 115

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           T+ +WD        + L+ H+     ++FS D   +AS   D  +  +D  +     C+ 
Sbjct: 116 TIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCVA 171

Query: 121 ----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW 175
               +    +S+AF  D   L + +S+G +  +D+    + L  LR       V+S+ +
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLR--GHENGVNSVAF 227

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.8 bits (138), Expect = 8e-09
 Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 6/255 (2%)

Query: 5   KDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63
             + LAS S L G + L +L +G   + L    + V   L +S +   L+ +   DGT+ 
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV-SSLAFSPDGGLLIASGSSDGTIR 224

Query: 64  LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-- 121
           LWD +      S L  HS      SFS D  ++AS   D  +  +D  S           
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVV-SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 122 EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV 181
            +   S+AF  D  +L +G+S+G V  +D+    + L+ L        VSSL +     +
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSL 342

Query: 182 FIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSL 241
            +   +      L     G  +   +   +V + S S    V  S     +    + S+ 
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402

Query: 242 TVGGTGEETPQRSYL 256
           ++    +    R   
Sbjct: 403 SLLRNLDGHTSRVTS 417

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 9   LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68
           +AS S  G + L +L +G   A L     +V  V  +S +   LL ++  DGT+ LWD +
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV-AFSPDGEKLL-SSSSDGTIKLWDLS 207

Query: 69  GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSS 127
                +  L+ H      ++FS D  ++AS   D  +  +D  +      ++ +    +S
Sbjct: 208 TGK-CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266

Query: 128 LAFIDDDWILTAGTSNGRVVFYD 150
           LA+  D   L +G+++G +  +D
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGD- 58
           ++   E L S S  G + L +L +G K   +     +  V ++   S +   +L+ +   
Sbjct: 73  FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132

Query: 59  DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS 117
           DGT+ LWD +     +  L+ HS     ++FS D K++AS   LD  +  +D  + +P S
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 118 CIT-YEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW 175
            +  +  P SSLAF  D  +L A  S +G +  +D+    + L    +  S   VSS   
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSVVSSFSP 251

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	633
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.95
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.95
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.93
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.9
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.9
KOG0286	343	consensus G-protein beta subunit [General function	99.9
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.9
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.89
KOG0286	343	consensus G-protein beta subunit [General function	99.89
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.89
KOG0266	456	consensus WD40 repeat-containing protein [General	99.89
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.89
PTZ00421	493	coronin; Provisional	99.89
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.89
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.89
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.88
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.88
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.88
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.88
PLN00181	793	protein SPA1-RELATED; Provisional	99.88
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0645	312	consensus WD40 repeat protein [General function pr	99.88
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.87
PTZ00420	568	coronin; Provisional	99.87
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.86
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.86
PTZ00420	568	coronin; Provisional	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
PTZ00421	493	coronin; Provisional	99.86
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.85
PLN00181	793	protein SPA1-RELATED; Provisional	99.85
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.85
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.84
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.84
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.84
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.84
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.84
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.83
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.83
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.83
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.82
KOG0645	312	consensus WD40 repeat protein [General function pr	99.82
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.82
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.82
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.81
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.81
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.81
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.8
KOG0646	476	consensus WD40 repeat protein [General function pr	99.8
KOG0296	399	consensus Angio-associated migratory cell protein	99.8
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.8
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.8
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.8
KOG0643	327	consensus Translation initiation factor 3, subunit	99.79
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.79
KOG0289	506	consensus mRNA splicing factor [General function p	99.79
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.79
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.78
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.78
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.78
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.78
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.77
KOG0641	350	consensus WD40 repeat protein [General function pr	99.77
KOG0296	399	consensus Angio-associated migratory cell protein	99.77
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.77
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.77
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.76
KOG0267	825	consensus Microtubule severing protein katanin p80	99.76
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.75
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.74
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.74
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.74
KOG0289	506	consensus mRNA splicing factor [General function p	99.74
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.74
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.74
KOG0639	705	consensus Transducin-like enhancer of split protei	99.73
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.73
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.72
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.72
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.72
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.72
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.71
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.71
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.71
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.71
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.71
KOG0267	825	consensus Microtubule severing protein katanin p80	99.71
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.71
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.7
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.68
KOG0643	327	consensus Translation initiation factor 3, subunit	99.68
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.68
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.68
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.68
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.67
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.67
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.67
KOG0641	350	consensus WD40 repeat protein [General function pr	99.65
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.65
KOG2096	420	consensus WD40 repeat protein [General function pr	99.65
KOG1274	933	consensus WD40 repeat protein [General function pr	99.65
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.64
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.62
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.62
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.62
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.62
KOG1273	405	consensus WD40 repeat protein [General function pr	99.61
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.61
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.61
KOG1539	910	consensus WD repeat protein [General function pred	99.6
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.59
KOG1274	933	consensus WD40 repeat protein [General function pr	99.59
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.58
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.58
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.58
KOG2055	514	consensus WD40 repeat protein [General function pr	99.58
KOG1188	376	consensus WD40 repeat protein [General function pr	99.57
KOG2048	691	consensus WD40 repeat protein [General function pr	99.57
KOG4328	498	consensus WD40 protein [Function unknown]	99.56
KOG2096	420	consensus WD40 repeat protein [General function pr	99.56
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.56
KOG1273	405	consensus WD40 repeat protein [General function pr	99.55
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.55
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.54
KOG2055	514	consensus WD40 repeat protein [General function pr	99.54
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.54
KOG0639	705	consensus Transducin-like enhancer of split protei	99.54
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.54
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.53
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.53
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.53
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.52
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.52
COG2319	466	FOG: WD40 repeat [General function prediction only	99.51
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.5
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.5
KOG0646	476	consensus WD40 repeat protein [General function pr	99.49
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.49
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.48
KOG0649	325	consensus WD40 repeat protein [General function pr	99.48
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.47
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.46
COG2319	466	FOG: WD40 repeat [General function prediction only	99.46
KOG4328	498	consensus WD40 protein [Function unknown]	99.45
KOG2048	691	consensus WD40 repeat protein [General function pr	99.45
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.45
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.44
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.44
KOG4227	609	consensus WD40 repeat protein [General function pr	99.43
PRK04922	433	tolB translocation protein TolB; Provisional	99.43
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.42
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.42
KOG2139	445	consensus WD40 repeat protein [General function pr	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.42
KOG1310	758	consensus WD40 repeat protein [General function pr	99.41
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.4
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.39
KOG1539	910	consensus WD repeat protein [General function pred	99.39
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.38
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.38
PRK05137	435	tolB translocation protein TolB; Provisional	99.37
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.37
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.37
PRK11028	330	6-phosphogluconolactonase; Provisional	99.37
PRK01742	429	tolB translocation protein TolB; Provisional	99.37
PRK11028	330	6-phosphogluconolactonase; Provisional	99.36
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.35
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.34
KOG1188	376	consensus WD40 repeat protein [General function pr	99.34
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.34
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.33
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.33
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.3
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.29
KOG4227	609	consensus WD40 repeat protein [General function pr	99.28
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.28
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.27
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.27
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.24
PRK01742	429	tolB translocation protein TolB; Provisional	99.21
KOG1310	758	consensus WD40 repeat protein [General function pr	99.21
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.2
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.19
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.17
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.15
KOG0649	325	consensus WD40 repeat protein [General function pr	99.15
PRK05137	435	tolB translocation protein TolB; Provisional	99.14
PRK03629	429	tolB translocation protein TolB; Provisional	99.12
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.11
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.11
KOG4547	541	consensus WD40 repeat-containing protein [General	99.11
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.11
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.08
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.08
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.07
PRK04922	433	tolB translocation protein TolB; Provisional	99.07
KOG2321	703	consensus WD40 repeat protein [General function pr	99.06
KOG1963	792	consensus WD40 repeat protein [General function pr	99.06
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.06
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.05
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.04
PRK01029	428	tolB translocation protein TolB; Provisional	99.02
KOG1334	559	consensus WD40 repeat protein [General function pr	99.02
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.02
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.02
PRK02889	427	tolB translocation protein TolB; Provisional	99.0
PRK04043	419	tolB translocation protein TolB; Provisional	99.0
PRK01029	428	tolB translocation protein TolB; Provisional	99.0
KOG2139	445	consensus WD40 repeat protein [General function pr	98.97
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.95
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.95
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.92
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.91
PRK00178	430	tolB translocation protein TolB; Provisional	98.89
KOG2321	703	consensus WD40 repeat protein [General function pr	98.88
PRK04792	448	tolB translocation protein TolB; Provisional	98.88
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.88
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.88
KOG1963	792	consensus WD40 repeat protein [General function pr	98.87
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.86
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.79
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.77
KOG2315	566	consensus Predicted translation initiation factor	98.76
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.75
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.73
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.72
COG4946	668	Uncharacterized protein related to the periplasmic	98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.65
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.64
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.64
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.59
KOG4547	541	consensus WD40 repeat-containing protein [General	98.57
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.57
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.53
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.48
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.47
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.46
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.43
KOG1334	559	consensus WD40 repeat protein [General function pr	98.43
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.41
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.39
COG4946	668	Uncharacterized protein related to the periplasmic	98.38
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.36
KOG2315	566	consensus Predicted translation initiation factor	98.36
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.35
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.28
PRK04043	419	tolB translocation protein TolB; Provisional	98.27
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.27
KOG2695	425	consensus WD40 repeat protein [General function pr	98.26
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.23
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.22
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.21
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.21
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.21
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.19
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.15
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.09
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.09
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.05
KOG2314	698	consensus Translation initiation factor 3, subunit	98.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.03
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.02
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
KOG2695	425	consensus WD40 repeat protein [General function pr	98.01
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.98
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.98
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.96
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.96
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.95
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.93
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.85
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.84
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.78
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.77
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.76
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.74
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.72
PRK02888	635	nitrous-oxide reductase; Validated	97.7
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.7
KOG2314	698	consensus Translation initiation factor 3, subunit	97.67
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.63
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.62
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.61
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.56
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.55
PRK02888	635	nitrous-oxide reductase; Validated	97.52
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.49
COG3391	381	Uncharacterized conserved protein [Function unknow	97.48
KOG3621	726	consensus WD40 repeat-containing protein [General	97.48
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.44
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.43
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.4
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.37
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.15
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.09
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.06
KOG3621	726	consensus WD40 repeat-containing protein [General	97.04
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.01
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.93
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.92
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.87
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.86
COG3391	381	Uncharacterized conserved protein [Function unknow	96.79
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.75
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.71
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.64
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.64
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.6
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.54
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.54
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.5
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.5
PRK13616	591	lipoprotein LpqB; Provisional	96.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.31
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.26
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.14
PRK13616	591	lipoprotein LpqB; Provisional	96.11
KOG2395	644	consensus Protein involved in vacuole import and d	96.05
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.91
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.89
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.84
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.82
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.8
PHA02713	557	hypothetical protein; Provisional	95.78
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.73
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.62
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.28
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.22
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.18
KOG2444	238	consensus WD40 repeat protein [General function pr	95.13
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.08
KOG2395	644	consensus Protein involved in vacuole import and d	95.06
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.95
KOG2444	238	consensus WD40 repeat protein [General function pr	94.81
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.69
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.47
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.43
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.39
COG5276	370	Uncharacterized conserved protein [Function unknow	94.34
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.29
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.28
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.19
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.11
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.01
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.0
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.99
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.94
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.88
PHA03098	534	kelch-like protein; Provisional	93.69
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.54
PRK10115	686	protease 2; Provisional	93.45
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.44
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.27
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.08
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.02
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.0
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.91
PHA02713	557	hypothetical protein; Provisional	92.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.63
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.2
KOG2247	615	consensus WD40 repeat-containing protein [General	92.17
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.91
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.9
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.86
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.69
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.44
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.2
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.8
PHA03098	534	kelch-like protein; Provisional	90.74
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.54
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.48
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.46
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.39
PHA02790	480	Kelch-like protein; Provisional	90.22
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.0
PRK10115	686	protease 2; Provisional	88.46
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.06
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.93
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.79
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.67
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.57
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	87.47
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.3
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	85.94
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	85.54
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	85.5
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.48
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.38
PRK13684	334	Ycf48-like protein; Provisional	84.77
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.61
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	84.42
PLN02153	341	epithiospecifier protein	84.3
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	84.29
PRK13684	334	Ycf48-like protein; Provisional	83.98
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.83
PLN02153	341	epithiospecifier protein	83.15
COG5167	776	VID27 Protein involved in vacuole import and degra	82.74
PHA02790	480	Kelch-like protein; Provisional	82.74
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	82.34
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.28
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	81.6
COG5167	776	VID27 Protein involved in vacuole import and degra	81.52
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	81.39
PF14727	418	PHTB1_N: PTHB1 N-terminus	81.38
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	80.85

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-65  Score=539.24  Aligned_cols=529  Identities=26%  Similarity=0.343  Sum_probs=438.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .|+..+.|||+++..|.|.|..+.++.....|....++.|+-+.|++..+++|.+++++|.|.+||+.+..+..+....|
T Consensus       128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H  207 (673)
T KOG4378|consen  128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH  207 (673)
T ss_pred             EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence            37888999999999999999999999999999877788999999999999999999999999999999999888889999


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ..+...|||+| +..+|++.+.|+.|.+||++..+....+.+..+...++|.++|.+|++|...|.|+.||+|..+.|+.
T Consensus       208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~  287 (673)
T KOG4378|consen  208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA  287 (673)
T ss_pred             cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence            99999999999 88899999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccccccccCCCCCCccCCCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS  239 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s~a~sss~sslt~~ssG~~s  239 (633)
                      ++.  .|...|++++|.+.- .++..+.      +-.|+.            .......     +. ..+..+.+.|   
T Consensus       288 v~s--ah~~sVt~vafq~s~-tvltkss------ln~G~~------------~~~~~vn-----~~-s~~~~aat~g---  337 (673)
T KOG4378|consen  288 VRS--AHDASVTRVAFQPSP-TVLTKSS------LNSGDN------------QQNGSVN-----SS-SNATGAATEG---  337 (673)
T ss_pred             Eee--ecccceeEEEeeecc-eeeeccc------cccCcc------------CCCceec-----cc-cccccccCCC---
Confidence            998  788999999999853 3333211      001110            0000000     00 0010111111   


Q ss_pred             ccccCCCCCCCCcccccCCCCCcceeecCCCCCCCCCcccccCcccccCcCCCCCcccccCCCCcc-ccCccCCCccccc
Q 006743          240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAK-KDHLPIDKKPSSM  318 (633)
Q Consensus       240 si~~~st~e~tP~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsPl~dv~p~~~s~~~~w~~~~g~~-~~~~~~~~~~~~~  318 (633)
                       +-+...-|++| +.++|+..+...+++-|..-+..+++.+|.|++++.+++.     |-+.+|-. +|++..+-+++  
T Consensus       338 -~rNsgiVe~aP-~~~l~~s~p~~~lsa~~~~ts~~~~~~g~p~iI~~ds~~k-----~~Ds~G~n~~d~~~~d~g~S--  408 (673)
T KOG4378|consen  338 -PRNSGIVERAP-SDELRKSIPANLLSAQNQLTSLGYGVSGTPTIIRRDSFCK-----FLDSQGPNAVDRMSTDLGAS--  408 (673)
T ss_pred             -CccccchhcCc-hhhhhhccCchhhhhhccccccccCccCCCceeehhhhhh-----hhhccCCccccceeeccCcc--
Confidence             23555678899 6999999999999999998889999999999999999998     86667766 57888887874  


Q ss_pred             cCCCCCCCccccCCCCceeeeee-ccCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCcCCCccchhhhhccCCCC
Q 006743          319 LFPSSSRRFPYAEDGSNEHSVFD-WKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLN  397 (633)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (633)
                               .|...++   ||+| |-+                .+|    |.+|.+++  |   |+++  +|..+-...-
T Consensus       409 ---------S~gD~fs---PIrDD~~~----------------~n~----K~~d~~~~--k---Gd~f--~f~p~~ns~f  449 (673)
T KOG4378|consen  409 ---------SYGDSFS---PIRDDWET----------------LNR----KPQDYETA--K---GDRF--SFCPPVNSGF  449 (673)
T ss_pred             ---------cccccCC---ccccchhh----------------cCC----CCCchhcc--c---cCcc--ccccccccCC
Confidence                     2233333   6663 221                122    77788887  3   5666  4554444444


Q ss_pred             CCCccccccCCCccccccccccccccccccccccccccccccccccccccccccccCcCCCCCCCCCCCCcccccccccc
Q 006743          398 MPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGIL  477 (633)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (633)
                      -|+|-.+ ++++.|++.|++.|.| ....+|...+.+..+.++.++  +.+.++|+++    ++..++.   .|.||++.
T Consensus       450 sp~~n~V-~Ss~ttS~~~~spl~d-f~~s~G~~~~~n~~lt~e~~~--~~s~~~e~~s----d~~~~s~---kl~t~gv~  518 (673)
T KOG4378|consen  450 SPVDNSV-NSSTTTSLQRNSPLKD-FSNSSGDGKLMNIALTDELCE--EQSANIEVAS----DTGGGSD---KLNTPGVD  518 (673)
T ss_pred             CcccCcc-cccccchhhccCcccc-ccCCCCcchhhcccccchHHH--Hhhcceeeec----cCCCCcc---cccCCCCC
Confidence            5677665 5568999999999999 777778888888888888776  9999999995    5566555   89999999


Q ss_pred             CCCCCCCCCCCCCccccCCCCcchhhhcccccCCccccCCCcccCCChhhHHHHHhhcccccccccccCCCCCCccCCCC
Q 006743          478 GSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGM  557 (633)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (633)
                      .++|+++. |.+ ++.|+  +++|++||.+++--.+-.++||+||+|.|          +|+.+..++++|.++.+||++
T Consensus       519 a~gn~~~~-~lS-N~TRn--s~~~~~~i~~~s~~~~L~~~p~i~ksss~----------n~p~~~~a~~ag~~s~l~~~v  584 (673)
T KOG4378|consen  519 AEGNRRLR-LLS-NATRN--STPHHANITPQSSNPLLKPQPLIAKSSSG----------NLPAQMDADWAGEFSELRDFV  584 (673)
T ss_pred             Cccccccc-ccc-ccccc--CCcccccCCCcccCccccCCcccccCCCC----------CCchhhhhhhhhhhHHHHHHH
Confidence            99999987 555 99999  99999999999955545599999999998          388889999999999999999


Q ss_pred             CCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhccccccchhccccccCC
Q 006743          558 SQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI  633 (633)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (633)
                      .|.+.. +.+..+-++|++|+|||++++|||+||.+||+||||||||||||||||+||||.|+++|++||++++||
T Consensus       585 ~qs~~~-~~q~~~~~~fs~q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~~Ems~llery~eNe~l~ael  659 (673)
T KOG4378|consen  585 DQSCEK-VEQELEYVTFSNQRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFMREMSRLLERYNENEMLKAEL  659 (673)
T ss_pred             Hhhhhh-HHhhcccchhHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            999887 777888999999999999999999999999999999999999999999999999999999999988875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.1e-27  Score=245.20  Aligned_cols=282  Identities=15%  Similarity=0.199  Sum_probs=223.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|.+|++|+.|.++++||+.+..+....++ |...|.||+|+|||. .|++|+.||+|++||..+++.....+.+|
T Consensus       122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH  199 (480)
T KOG0271|consen  122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGH  199 (480)
T ss_pred             EecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCc
Confidence            4899999999999999999999999999999987 778889999999998 89999999999999999998888999999


Q ss_pred             CCCeEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           81 SAPTAGISFSS-----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        81 ~~~VtsLafSP-----dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      ...|++++|.|     ..++|++++.||.|+|||+..++++..+ +|..+|+|++|--+ .+|++|+.|++|++|+...+
T Consensus       200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG  278 (480)
T ss_pred             ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch
Confidence            99999999976     5679999999999999999999998887 79999999999755 48899999999999999886


Q ss_pred             CCceEEEeecCCCCCeeEEEEccC-----------CCe---------------EEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRA-----------KPV---------------FIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPd-----------g~~---------------Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                       ...+.++  +|..+|..++.+.+           +++               -+++  ...+..|++++.|.++.+|+.
T Consensus       279 -~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~--~~~~erlVSgsDd~tlflW~p  353 (480)
T KOG0271|consen  279 -KLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL--KDSGERLVSGSDDFTLFLWNP  353 (480)
T ss_pred             -hHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh--ccCcceeEEecCCceEEEecc
Confidence             4556666  89999999988732           211               0111  123356899999999999975


Q ss_pred             CCCCCCCcccccccccCCCCCCccCCCCCCCccccCCCCCCCCcccccCCCCCcceeecCCCCCCCCCcccccCc---cc
Q 006743          209 LPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSP---LV  285 (633)
Q Consensus       209 r~~~~~ss~s~s~a~sss~sslt~~ssG~~ssi~~~st~e~tP~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsP---l~  285 (633)
                      .....+                                     - .++.....+..             ...|||   ++
T Consensus       354 ~~~kkp-------------------------------------i-~rmtgHq~lVn-------------~V~fSPd~r~I  382 (480)
T KOG0271|consen  354 FKSKKP-------------------------------------I-TRMTGHQALVN-------------HVSFSPDGRYI  382 (480)
T ss_pred             cccccc-------------------------------------h-hhhhchhhhee-------------eEEECCCccEE
Confidence            322110                                     0 01101111110             124777   88


Q ss_pred             ccCcCCCCCcccccCCCCccccCccCCC--ccccccCCCCCCCccccCCCCceeeeeeccC
Q 006743          286 DVQPITPSLDKLWDGHEGAKKDHLPIDK--KPSSMLFPSSSRRFPYAEDGSNEHSVFDWKS  344 (633)
Q Consensus       286 dv~p~~~s~~~~w~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (633)
                      +-.+.+.| +|+|++..|...++|-+|.  -++ +.| |.+.||-....-..-.-|||-++
T Consensus       383 ASaSFDkS-VkLW~g~tGk~lasfRGHv~~VYq-vaw-saDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  383 ASASFDKS-VKLWDGRTGKFLASFRGHVAAVYQ-VAW-SADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             EEeecccc-eeeeeCCCcchhhhhhhccceeEE-EEe-ccCccEEEEcCCCceEEEEEeee
Confidence            88889987 5999999999999999886  333 458 99999887666655566666554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.4e-27  Score=246.72  Aligned_cols=198  Identities=18%  Similarity=0.222  Sum_probs=176.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      .|+.|++.|++|+.+|.++||+..+...++++.+ |...|.++.|+|. ....+++|+.||+|++|++.+..+ +..+.+
T Consensus       182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~-l~~l~g  259 (459)
T KOG0272|consen  182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP-LQDLEG  259 (459)
T ss_pred             EeecCCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCCcc-hhhhhc
Confidence            3789999999999999999999999999999997 6667788999998 355799999999999999998764 678999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      |...|..++|+|+|++|++++.|.+-++||++++..+... +|...|.+++|++||..+++|+-|..-+|||+|++. ++
T Consensus       260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~i  338 (459)
T KOG0272|consen  260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CI  338 (459)
T ss_pred             chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EE
Confidence            9999999999999999999999999999999998776554 799999999999999999999999999999999994 44


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s  215 (633)
                      ..+.  +|...|.+|+|+|+|            ..+++|+.|++++|||+|......
T Consensus       339 m~L~--gH~k~I~~V~fsPNG------------y~lATgs~Dnt~kVWDLR~r~~ly  381 (459)
T KOG0272|consen  339 MFLA--GHIKEILSVAFSPNG------------YHLATGSSDNTCKVWDLRMRSELY  381 (459)
T ss_pred             EEec--ccccceeeEeECCCc------------eEEeecCCCCcEEEeeecccccce
Confidence            4455  899999999999954            455666889999999999877743

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.1e-26  Score=243.71  Aligned_cols=189  Identities=16%  Similarity=0.214  Sum_probs=172.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++++.|.+-++||+.++..+....+ |...|.+++|.++|. ++++|+.|..-+|||++++.+ +..+.+|
T Consensus       268 afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~-im~L~gH  344 (459)
T KOG0272|consen  268 AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC-IMFLAGH  344 (459)
T ss_pred             eecCCCceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCCc-eeeccCccchhheeecccCcE-EEEeccc
Confidence            6999999999999999999999999988877776 666778899999998 999999999999999999986 6778999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ..+|.+|+|+|+|..|++|+.|++++|||++..+.+.++ +|..-|+.|+|.| .|.+|++++.|++++||..++. +++
T Consensus       345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~  423 (459)
T KOG0272|consen  345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPL  423 (459)
T ss_pred             ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc-ccc
Confidence            999999999999999999999999999999998888877 6999999999999 7899999999999999999987 567


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +.+.  +|.+.|.++++++++++++            +++.|+++|+|.
T Consensus       424 ksLa--GHe~kV~s~Dis~d~~~i~------------t~s~DRT~KLW~  458 (459)
T KOG0272|consen  424 KSLA--GHEGKVISLDISPDSQAIA------------TSSFDRTIKLWR  458 (459)
T ss_pred             hhhc--CCccceEEEEeccCCceEE------------EeccCceeeecc
Confidence            7777  9999999999999665554            457799999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.94  E-value=2.9e-26  Score=255.18  Aligned_cols=195  Identities=18%  Similarity=0.290  Sum_probs=176.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .|+|+.++|++++.|++|++|.+.+..++..+++ |..+|.++.|+|.|- +||+++.|++.++|......+ .+.+.+|
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~P-lRifagh  534 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKP-LRIFAGH  534 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCce-EEEecCCCceeeeeecccCCc-hhhhccc
Confidence            4899999999999999999999999999999996 778899999999985 999999999999999988774 6788999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...|.|+.|+|+..++++|+.|++|++||+.+|..++.+ +|.++|.+++|+|+|++|++|+.||.|.+||+.++. ++.
T Consensus       535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~  613 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS-LVK  613 (707)
T ss_pred             ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-chh
Confidence            999999999999999999999999999999999999998 799999999999999999999999999999999973 444


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .+.  +|.+.|.++.|+.+            +.+|++++.|+.|++||+.....
T Consensus       614 ~l~--~Ht~ti~SlsFS~d------------g~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  614 QLK--GHTGTIYSLSFSRD------------GNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             hhh--cccCceeEEEEecC------------CCEEEecCCCCeEEEEEchhhcc
Confidence            444  79999999999985            45556668899999999975443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.93  E-value=1e-24  Score=219.51  Aligned_cols=189  Identities=20%  Similarity=0.323  Sum_probs=161.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H   80 (633)
                      .++||++.++++.|+.+++||+.+++..+.|.+ |...|.+++|+++++ .+++|+.|++|++|++.+... ..... .|
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck-~t~~~~~~  147 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCK-YTIHEDSH  147 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCc-eeecCCCcceeeeeeecccEE-EEEecCCC
Confidence            578999999999999999999999999999998 555567799999998 799999999999999988763 33222 23


Q ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           81 SAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        81 ~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      .+.|.|++|+|+  ..+|++++.|++|++||+++.+....+ +|.+.++.++++|||...++|+.||.+.+||++.++. 
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-  226 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-  226 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-
Confidence            789999999995  789999999999999999998877665 7999999999999999999999999999999998853 


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                         +...+|...|.+++|+|+..+|+.             ..+..|+|||+..
T Consensus       227 ---lysl~a~~~v~sl~fspnrywL~~-------------at~~sIkIwdl~~  263 (315)
T KOG0279|consen  227 ---LYSLEAFDIVNSLCFSPNRYWLCA-------------ATATSIKIWDLES  263 (315)
T ss_pred             ---eEeccCCCeEeeEEecCCceeEee-------------ccCCceEEEeccc
Confidence               444578999999999997544443             3456688888763

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-25  Score=231.47  Aligned_cols=207  Identities=15%  Similarity=0.225  Sum_probs=174.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-----CCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----SRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-----g~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      +|+|||+.||+|+.||.|++||.++|+.+..-...|...|.+++|.|-     .+ +|++++.||.|+|||+..+.+ +.
T Consensus       164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~-~~  241 (480)
T KOG0271|consen  164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC-VR  241 (480)
T ss_pred             EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceE-EE
Confidence            599999999999999999999999988765444447888999999763     34 899999999999999998875 67


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEe-----------cCCC--------
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFI-----------DDDW--------  135 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafS-----------PdG~--------  135 (633)
                      ++.+|..+|+|++|-- ..+|++|+.|++|++|+...|++.+.+ +|...|+.++++           |.++        
T Consensus       242 ~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~  320 (480)
T KOG0271|consen  242 TLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE  320 (480)
T ss_pred             EeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence            8999999999999974 458999999999999999999988877 688999998877           2233        


Q ss_pred             -----------------EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec------------
Q 006743          136 -----------------ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET------------  186 (633)
Q Consensus       136 -----------------~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s------------  186 (633)
                                       .|++|+.|.++.+|+....++++....  +|...|..+.|+||+++|++++            
T Consensus       321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh--chhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence                             499999999999999998877777666  8999999999999999998664            


Q ss_pred             ------------------cCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          187 ------------------TCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       187 ------------------~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                                        +..|..++++++.|.++++||++..+
T Consensus       399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence                              34566677777777777777776543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=232.83  Aligned_cols=201  Identities=19%  Similarity=0.290  Sum_probs=171.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      .|+++|+++++++.|+.+++|+....+  ....+.+ |...|++++|+|++. ++++++.|++|+|||+......++.++
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~  243 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK  243 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec
Confidence            389999999999999999999997777  5666644 777899999999998 899999999999999965544578899


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-  156 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k-  156 (633)
                      +|...|++++|+|+++++++|+.|++|+|||+++++++..+ .|.+.|.+++|++++++|++++.|+.|+|||+.++.. 
T Consensus       244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence            99999999999999999999999999999999999998888 6999999999999999999999999999999999853 


Q ss_pred             ceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          157 PLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       157 ~v~~l~~~~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      +...+.  .+..  ++++++|+|++.++            +.+..|+.+++||++.......+
T Consensus       324 ~~~~~~--~~~~~~~~~~~~fsp~~~~l------------l~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  324 CLKLLS--GAENSAPVTSVQFSPNGKYL------------LSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             eeeccc--CCCCCCceeEEEECCCCcEE------------EEecCCCeEEEEEccCCcceeee
Confidence            233444  3333  69999999965554            55577999999999865554443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.90  E-value=7.4e-23  Score=211.39  Aligned_cols=204  Identities=18%  Similarity=0.304  Sum_probs=175.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      ++.|.++++++|+.|++|+|||+.+|++...+.+ |-..|+.|++++... |+++++.|+.|+.||++.++. ++.+.+|
T Consensus       158 avdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nkv-IR~YhGH  234 (460)
T KOG0285|consen  158 AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNKV-IRHYHGH  234 (460)
T ss_pred             eeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCc-eEEEecCCCeeEEEechhhhh-HHHhccc
Confidence            3668889999999999999999999999999987 667889999999988 899999999999999998884 6778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      -..|+|++.+|.-..|++|+.|.++++||+|+...+..+ +|..+|..+.+.|-.-.+++|+.|++|++||++.++. ..
T Consensus       235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-~~  313 (460)
T KOG0285|consen  235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-MI  313 (460)
T ss_pred             cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-eE
Confidence            999999999999999999999999999999999988888 6999999999999888999999999999999999853 23


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEec----------------------------cCCCCeEEEEeeCCCeEEccCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDET----------------------------TCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s----------------------------~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .+.  .|...|.+++.+|....+++++                            ..+.+.++++|+..+.+..||-+.
T Consensus       314 tlt--~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  314 TLT--HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             eee--cccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence            333  6899999999998655554332                            122344667777788888888764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.90  E-value=2.6e-22  Score=202.25  Aligned_cols=190  Identities=18%  Similarity=0.231  Sum_probs=161.3

Q ss_pred             CCEEEEEECCCcEEEEECCC-----CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            6 DEHLASISLSGDLILHNLAS-----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~t-----gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      -+.|++++.|..|.+|++..     |..++.+++ |...|..+..+++++ ++++++.|+++++||+.+++ ..+.+.+|
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~-~t~~f~GH  104 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGE-STRRFVGH  104 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCc-eEEeccccceEEEEEecCCc-EEEEEEec
Confidence            45788999999999999853     557788887 778899999999998 89999999999999999986 46788999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      ...|.+++|++|.+.|++|+.|++|++||+..........  +.+.|.|++|+|+  +-+|+.++.|++|++||+++.+ 
T Consensus       105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-  183 (315)
T KOG0279|consen  105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-  183 (315)
T ss_pred             CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-
Confidence            9999999999999999999999999999998655444443  3789999999997  7899999999999999999873 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ....+  .+|.+.++.++++|||..            +++|+.|+.+.+||++....
T Consensus       184 l~~~~--~gh~~~v~t~~vSpDGsl------------casGgkdg~~~LwdL~~~k~  226 (315)
T KOG0279|consen  184 LRTTF--IGHSGYVNTVTVSPDGSL------------CASGGKDGEAMLWDLNEGKN  226 (315)
T ss_pred             hhhcc--ccccccEEEEEECCCCCE------------EecCCCCceEEEEEccCCce
Confidence            22333  489999999999996554            45557899999999965444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.90  E-value=5.5e-24  Score=222.74  Aligned_cols=192  Identities=19%  Similarity=0.275  Sum_probs=171.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .|+++|.++++|+.+|.|++|+. ....++.++.||...|++++|+|++. .|++|++||+|+|||....+. ...+.+|
T Consensus       145 ~ws~~g~wmiSgD~gG~iKyWqp-nmnnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke-e~vL~GH  221 (464)
T KOG0284|consen  145 KWSHNGTWMISGDKGGMIKYWQP-NMNNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE-ERVLRGH  221 (464)
T ss_pred             EEccCCCEEEEcCCCceEEeccc-chhhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch-hheeccC
Confidence            38899999999999999999996 45667778888889999999999876 899999999999999976664 4667999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      .-.|.+++|+|...+|++++.|..|++||.+++.++..+ .|+..|..+.|++++++|++++.|..+++||+++. +.+.
T Consensus       222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~  300 (464)
T KOG0284|consen  222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELF  300 (464)
T ss_pred             CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHH
Confidence            999999999999999999999999999999999999877 69999999999999999999999999999999965 3344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .++  +|...|+++.|+|-           .+.+|.+++.|+.|..|.+.
T Consensus       301 ~~r--~Hkkdv~~~~WhP~-----------~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  301 TYR--GHKKDVTSLTWHPL-----------NESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             Hhh--cchhhheeeccccc-----------cccceeeccCCCceEEEecc
Confidence            444  89999999999993           56677888889999999886

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.90  E-value=2.7e-22  Score=203.09  Aligned_cols=200  Identities=19%  Similarity=0.262  Sum_probs=171.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC--c----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASG--A----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tg--k----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      ||+|.|+++|.|+.|+...||++.+.  +    ..+++.+ |...+.|+.|.+|+.  |++++.|.+..+||+++++. +
T Consensus       104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g-HtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~-~  179 (343)
T KOG0286|consen  104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG-HTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQ-T  179 (343)
T ss_pred             EECCCCCeEEecCcCceeEEEecccccccccceeeeeecC-ccceeEEEEEcCCCc--eEecCCCceEEEEEcccceE-E
Confidence            69999999999999999999999754  2    2344554 778899999998764  99999999999999999884 7


Q ss_pred             EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ..+.+|.+.|.++.+.| +++.|++|+.|+..++||+|.+.+++.+ +|+..|++++|.|+|.-+++|+.|++.++||+|
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            88999999999999999 9999999999999999999999999888 699999999999999999999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      .. +.+.++....-..+|++++|+..|++|            +.|..|..+.+||.....-...+
T Consensus       260 aD-~~~a~ys~~~~~~gitSv~FS~SGRlL------------fagy~d~~c~vWDtlk~e~vg~L  311 (343)
T KOG0286|consen  260 AD-QELAVYSHDSIICGITSVAFSKSGRLL------------FAGYDDFTCNVWDTLKGERVGVL  311 (343)
T ss_pred             CC-cEEeeeccCcccCCceeEEEcccccEE------------EeeecCCceeEeeccccceEEEe
Confidence            87 445666655566789999999865555            44466999999998765544433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.90  E-value=9.7e-23  Score=206.92  Aligned_cols=198  Identities=16%  Similarity=0.236  Sum_probs=172.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~-tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      .|+|+|.+||+|+.|..|.+|++. +.+....+++ |...|..+.|.++++ .+++++.|++|+.||.++++. .+..+.
T Consensus        54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~-~rk~k~  130 (338)
T KOG0265|consen   54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGS-HILSCGTDKTVRGWDAETGKR-IRKHKG  130 (338)
T ss_pred             EECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCC-EEEEecCCceEEEEeccccee-eehhcc
Confidence            489999999999999999999964 3344555665 778889999999998 799999999999999999985 677899


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        80 H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      |..-|+.++-+. ...++.+++.|+++++||+|+..+++++..+..++++.|..++..+++|+-|+.|++||++... ..
T Consensus       131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-~~  209 (338)
T KOG0265|consen  131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-GL  209 (338)
T ss_pred             ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCc-ce
Confidence            999999998555 5567889999999999999999999999888999999999999999999999999999999873 44


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss  216 (633)
                      .++.  +|..+|+.+..+|+|.++            ++.++|.++++||+||+.+..+
T Consensus       210 ~~ls--Gh~DtIt~lsls~~gs~l------------lsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  210 YTLS--GHADTITGLSLSRYGSFL------------LSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             EEee--cccCceeeEEeccCCCcc------------ccccccceEEEEEecccCCCCc
Confidence            5555  999999999999965554            5558899999999999999766

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.89  E-value=9.4e-23  Score=227.37  Aligned_cols=197  Identities=15%  Similarity=0.229  Sum_probs=170.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-------------------------------eeEEEeCCCCCcEEEEEEccCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA-------------------------------KAAELKDPNEQVLRVLDYSRNS   49 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-------------------------------~v~~~~~~~~~~VssLafSpdg   49 (633)
                      .|+.|+.+||.|..|..|++|.+...+                               ....+. .|.++|..+.|+|+.
T Consensus       385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVyg~sFsPd~  463 (707)
T KOG0263|consen  385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSGPVYGCSFSPDR  463 (707)
T ss_pred             eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCCceeeeeecccc
Confidence            378899999999999999999986311                               112233 477788889999998


Q ss_pred             CeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEE
Q 006743           50 RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSL  128 (633)
Q Consensus        50 ~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsL  128 (633)
                      + +|++++.|++|++|.+.+..+. ...++|..+|+++.|+|.|-+||+++.|++-++|......+.+++ +|-+.|.|+
T Consensus       464 r-fLlScSED~svRLWsl~t~s~~-V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv  541 (707)
T KOG0263|consen  464 R-FLLSCSEDSSVRLWSLDTWSCL-VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV  541 (707)
T ss_pred             c-ceeeccCCcceeeeecccceeE-EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceE
Confidence            8 9999999999999999999864 457799999999999999999999999999999999998888887 699999999


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       129 afSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .|+|+..|+++|+.|.+|++||+.++ ..++++.  +|.++|++++|+|+|++|++            |+.|+.|++||+
T Consensus       542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~--GH~~~V~al~~Sp~Gr~LaS------------g~ed~~I~iWDl  606 (707)
T KOG0263|consen  542 SFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFT--GHKGPVTALAFSPCGRYLAS------------GDEDGLIKIWDL  606 (707)
T ss_pred             EECCcccccccCCCCceEEEEEcCCC-cEEEEec--CCCCceEEEEEcCCCceEee------------cccCCcEEEEEc
Confidence            99999999999999999999999998 4567776  89999999999997666555            477999999999


Q ss_pred             CCCCCCC
Q 006743          209 LPSVTTS  215 (633)
Q Consensus       209 r~~~~~s  215 (633)
                      .......
T Consensus       607 ~~~~~v~  613 (707)
T KOG0263|consen  607 ANGSLVK  613 (707)
T ss_pred             CCCcchh
Confidence            7644433

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.89  E-value=4.8e-22  Score=201.33  Aligned_cols=186  Identities=17%  Similarity=0.197  Sum_probs=162.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      |+.+|++++.|.+..+||+++++.+..|.+|..+ |.++.++|...+.|++|+.|+..+|||++.+.+ ++.+.+|...|
T Consensus       155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD-V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDI  232 (343)
T KOG0286|consen  155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGD-VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDI  232 (343)
T ss_pred             CCCceEecCCCceEEEEEcccceEEEEecCCccc-EEEEecCCCCCCeEEecccccceeeeeccCcce-eEeeccccccc
Confidence            4668999999999999999999999999985555 566999994444899999999999999999875 78999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h---~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l  161 (633)
                      +.++|.|+|.-|++|++|+++++||+|..+.+..+.+   ..+|++++|+..|++|++|..|..+.+||.-..+ .+..+
T Consensus       233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e-~vg~L  311 (343)
T KOG0286|consen  233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE-RVGVL  311 (343)
T ss_pred             ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc-eEEEe
Confidence            9999999999999999999999999999998888854   4679999999999999999999999999998773 33444


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      .  +|...|.|+..+|||-.++++            +-|..++||.
T Consensus       312 ~--GHeNRvScl~~s~DG~av~Tg------------SWDs~lriW~  343 (343)
T KOG0286|consen  312 A--GHENRVSCLGVSPDGMAVATG------------SWDSTLRIWA  343 (343)
T ss_pred             e--ccCCeeEEEEECCCCcEEEec------------chhHheeecC
Confidence            4  999999999999966555554            5699999993

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.89  E-value=3.2e-22  Score=212.57  Aligned_cols=199  Identities=17%  Similarity=0.283  Sum_probs=168.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-------   73 (633)
                      +|+.+|..||+|..||.++||+. +|..+..+.. |+.+|..++|+.+|. +|++++.|+++.|||..++...       
T Consensus       242 ~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~-HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s  318 (524)
T KOG0273|consen  242 DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQ-HKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHS  318 (524)
T ss_pred             EecCCCCeEEEeecCcEEEEEec-Cchhhhhhhc-cCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeecc
Confidence            58999999999999999999996 6777777765 777888899999998 8999999999999998443211       


Q ss_pred             ---------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-
Q 006743           74 ---------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-  119 (633)
Q Consensus        74 ---------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-  119 (633)
                                                       +.++.+|.+.|.++.|+|.+.+|++++.|++++||.+........+ 
T Consensus       319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~  398 (524)
T KOG0273|consen  319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ  398 (524)
T ss_pred             CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence                                             3456789999999999999999999999999999999888777766 


Q ss_pred             eCCCCeEEEEEecC---------CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          120 TYEAPFSSLAFIDD---------DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       120 ~h~~~ItsLafSPd---------G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                      .|...|+.+.|+|+         +..+++++.|++|++||+..+ .++..+.  .|..+|++++|+|+|+++++      
T Consensus       399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~--kH~~pVysvafS~~g~ylAs------  469 (524)
T KOG0273|consen  399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLM--KHQEPVYSVAFSPNGRYLAS------  469 (524)
T ss_pred             hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeec--cCCCceEEEEecCCCcEEEe------
Confidence            69999999999995         568999999999999999988 4555554  79999999999997666555      


Q ss_pred             CeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          191 ETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                            |+.|+.|.+|+.+...-..++
T Consensus       470 ------Gs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  470 ------GSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             ------cCCCCeeEeccccchheeEee
Confidence                  477999999998766554443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=9e-22  Score=218.44  Aligned_cols=198  Identities=21%  Similarity=0.334  Sum_probs=164.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEEC-CCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl-~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+++|+++++++.|++|+|||+ ..+..++.+++ |...|++++|+|++ +++++|+.|++|+|||++++++ +..+.+
T Consensus       210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~-~~~l~~  286 (456)
T KOG0266|consen  210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC-VRKLKG  286 (456)
T ss_pred             EECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE-EEeeec
Confidence            58999999999999999999999 55578888886 66778999999999 4999999999999999999774 788999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeeEe-eCCC--CeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI-TYEA--PFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk--~v~~i-~h~~--~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      |...|.+++|++++++|++++.|+.|++||+.++.  +...+ .+..  .+++++|+|++.+|++++.|+.|++||++..
T Consensus       287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            99999999999999999999999999999999998  44444 3333  5999999999999999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      . ....+.  +|...+.|+ |++.        ...++.++++++.|+.|++||+.....
T Consensus       367 ~-~~~~~~--~~~~~~~~~-~~~~--------~~~~~~~i~sg~~d~~v~~~~~~s~~~  413 (456)
T KOG0266|consen  367 K-SVGTYT--GHSNLVRCI-FSPT--------LSTGGKLIYSGSEDGSVYVWDSSSGGI  413 (456)
T ss_pred             c-ceeeec--ccCCcceeE-eccc--------ccCCCCeEEEEeCCceEEEEeCCccch
Confidence            3 334444  565544222 2221        134778888889999999999975443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=6.1e-22  Score=219.28  Aligned_cols=287  Identities=19%  Similarity=0.301  Sum_probs=212.3

Q ss_pred             CccCCCCEEEEEECC-CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~D-G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +||..|++||.|+.. |.+-||++.+...+.+.++ |...+.+++++|||+ ++++|++||+|+|||...+-| ..++..
T Consensus       314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC-~vTFte  390 (893)
T KOG0291|consen  314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFC-FVTFTE  390 (893)
T ss_pred             EecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCc-EEEeccCCCcEEEEeccCceE-EEEecc
Confidence            478889999998765 8999999999888888887 666788899999998 999999999999999998886 567899


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC--eEEEEEecCCCEEEEEEcCCe-EEEEECCCCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--FSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQ  156 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~--ItsLafSPdG~~LatGs~DGs-V~IWDlrs~~k  156 (633)
                      |+..|+.+.|+..++.+++.+.||+|+.||+...+..+++....+  ..|++.+|.|..+.+|+.|.. |+||++.++ +
T Consensus       391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-q  469 (893)
T KOG0291|consen  391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-Q  469 (893)
T ss_pred             CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-e
Confidence            999999999999999999999999999999999999988865544  568888888999999998865 999999998 5


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccccccccCCCCCCccCCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSA  236 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s~a~sss~sslt~~ssG  236 (633)
                      .+.++.  +|.++|.+++|+|.+..            |++++.|++|++||+-......   ..-.+.+..-..+..+.|
T Consensus       470 llDiLs--GHEgPVs~l~f~~~~~~------------LaS~SWDkTVRiW~if~s~~~v---Etl~i~sdvl~vsfrPdG  532 (893)
T KOG0291|consen  470 LLDILS--GHEGPVSGLSFSPDGSL------------LASGSWDKTVRIWDIFSSSGTV---ETLEIRSDVLAVSFRPDG  532 (893)
T ss_pred             eeehhc--CCCCcceeeEEccccCe------------EEeccccceEEEEEeeccCcee---eeEeeccceeEEEEcCCC
Confidence            566666  99999999999996554            5555679999999985432211   111112222222222222


Q ss_pred             CCCccccCCCCCCCCcccccCCCCCcceeecCCCCCCCCCcccccCcccccC--cCCCCCcccccCCCCcc-ccCccCC-
Q 006743          237 EASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ--PITPSLDKLWDGHEGAK-KDHLPID-  312 (633)
Q Consensus       237 ~~ssi~~~st~e~tP~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsPl~dv~--p~~~s~~~~w~~~~g~~-~~~~~~~-  312 (633)
                      ....+.                              .....+.+|.+-++++  .|+.-    -|.-.|.+ .|.+-+. 
T Consensus       533 ~elaVa------------------------------TldgqItf~d~~~~~q~~~Idgr----kD~~~gR~~~D~~ta~~  578 (893)
T KOG0291|consen  533 KELAVA------------------------------TLDGQITFFDIKEAVQVGSIDGR----KDLSGGRKETDRITAEN  578 (893)
T ss_pred             CeEEEE------------------------------EecceEEEEEhhhceeeccccch----hhccccccccceeehhh
Confidence            211111                              1112334444444333  23321    12223433 4666665 


Q ss_pred             ----Ccccccc-CCCCCCCccccCCCCceeeeeeccC
Q 006743          313 ----KKPSSML-FPSSSRRFPYAEDGSNEHSVFDWKS  344 (633)
Q Consensus       313 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  344 (633)
                          +.++ +| | |++..+-.+...++-+||.|-..
T Consensus       579 sa~~K~Ft-ti~y-SaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  579 SAKGKTFT-TICY-SADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             cccCCceE-EEEE-cCCCCEEEecCCcccEEEEECch
Confidence                4555 66 7 99999999999999999998653

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=2.8e-21  Score=215.97  Aligned_cols=197  Identities=15%  Similarity=0.279  Sum_probs=156.0

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      +|+| ++++|++|+.||.|+|||+.++.       .+..+.+ |...|.+|+|+|++.++|++|+.|++|+|||+.+...
T Consensus        82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~  160 (493)
T PTZ00421         82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA  160 (493)
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence            4888 78999999999999999997653       3556665 6678899999998766999999999999999988764


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCC-eEEEEEecCCCEEEEEE----cCCeE
Q 006743           73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP-FSSLAFIDDDWILTAGT----SNGRV  146 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~-ItsLafSPdG~~LatGs----~DGsV  146 (633)
                       +..+..|...|.+++|+|++.+|++++.|++|++||+++++.+..+ .|.+. +..+.|.+++..|++++    .|+.|
T Consensus       161 -~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V  239 (493)
T PTZ00421        161 -VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI  239 (493)
T ss_pred             -EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence             5677889999999999999999999999999999999999887766 45544 45778999888877654    47899


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ++||+++...++.... ..+...+....|++++.++           ++++..|+.|++||++..
T Consensus       240 klWDlr~~~~p~~~~~-~d~~~~~~~~~~d~d~~~L-----------~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        240 MLWDTRKMASPYSTVD-LDQSSALFIPFFDEDTNLL-----------YIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEEeCCCCCCceeEec-cCCCCceEEEEEcCCCCEE-----------EEEEeCCCeEEEEEeeCC
Confidence            9999998766655443 1233455566677754333           333446999999999653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.89  E-value=9.2e-22  Score=195.66  Aligned_cols=200  Identities=13%  Similarity=0.190  Sum_probs=167.6

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEeccCCCCeE
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHSAPTA   85 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-~v~~l~~H~~~Vt   85 (633)
                      -+|++++.|.+|++|...+|.+..+++ |....|+.+...|+++ .|++++. ..|++||+++..+ ++..+.+|...|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            378999999999999999999999998 4677789999999987 6766665 7799999987775 6889999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 006743           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS  165 (633)
Q Consensus        86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~  165 (633)
                      .+.|..+|+++++|++||++||||+|...+.+.+.+..+|+++..+|+...|++|..+|.|++||+++.......+  +.
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li--Pe  165 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI--PE  165 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC--CC
Confidence            9999999999999999999999999998888888999999999999999999999999999999999763221222  23


Q ss_pred             CCCCeeEEEEccCCCeEEEe------------------------------------ccCCCCeEEEEeeCCCeEEccCCC
Q 006743          166 SSEAVSSLCWQRAKPVFIDE------------------------------------TTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       166 H~~~VtsLafsPdg~~Las~------------------------------------s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ....|.++...|+|.+++..                                    ..+.+..+|++++.|.+++||...
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence            44667777777777766632                                    235566777788888888888776


Q ss_pred             CC
Q 006743          210 PS  211 (633)
Q Consensus       210 ~~  211 (633)
                      .+
T Consensus       246 ~~  247 (311)
T KOG0315|consen  246 DF  247 (311)
T ss_pred             Cc
Confidence            65

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.89  E-value=4.6e-23  Score=215.82  Aligned_cols=193  Identities=17%  Similarity=0.249  Sum_probs=163.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .|.|+|+.|++|+..|.+.+|+...-. -..+...|...|+++.|++++. ++++|+.+|.|++|+..-..  ++.+..|
T Consensus       103 ~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn--Vk~~~ah  178 (464)
T KOG0284|consen  103 RWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN--VKIIQAH  178 (464)
T ss_pred             EEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhh--hHHhhHh
Confidence            389999999999999999999973221 1223345889999999999998 89999999999999987655  4556666


Q ss_pred             C-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 S-APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~-~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      . ..|++++|+|+...|++|++||+|+|||....+....+ +|...|.+++|+|....|++|+.|..|++||.+++. ++
T Consensus       179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl  257 (464)
T KOG0284|consen  179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CL  257 (464)
T ss_pred             hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-hh
Confidence            5 89999999999999999999999999999988776666 799999999999999999999999999999999984 44


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ..+.  +|...|..+.|+++++            +|++++.|..++++|+|...
T Consensus       258 ~tlh--~HKntVl~~~f~~n~N------------~Llt~skD~~~kv~DiR~mk  297 (464)
T KOG0284|consen  258 ATLH--GHKNTVLAVKFNPNGN------------WLLTGSKDQSCKVFDIRTMK  297 (464)
T ss_pred             hhhh--hccceEEEEEEcCCCC------------eeEEccCCceEEEEehhHhH
Confidence            4444  8999999999999654            45566889999999999433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.88  E-value=1.6e-21  Score=194.05  Aligned_cols=196  Identities=12%  Similarity=0.152  Sum_probs=164.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |..+|+++++|+.||+++|||++...+.+.++  +...|++|..+|+.. -|++|..+|.|+|||+....+....+....
T Consensus        91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             EeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCC
Confidence            78999999999999999999999866666666  568899999999977 689999999999999988866555566677


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP------SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~------v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      ..|.++...|||.+++.+...|.+++|++-+...      +..+ .|.+.+..+.++||+++|++++.|.+|+||+.++.
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            8999999999999999999999999999876432      2222 58999999999999999999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      -+....+.  +|..++...+|+-+|            .+|++++.|+.+++||+......
T Consensus       248 ~kle~~l~--gh~rWvWdc~FS~dg------------~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  248 FKLELVLT--GHQRWVWDCAFSADG------------EYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             eeeEEEee--cCCceEEeeeeccCc------------cEEEecCCCCceeecccccCcee
Confidence            33333444  899999999998854            45556677999999999765543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=4.5e-22  Score=198.34  Aligned_cols=194  Identities=21%  Similarity=0.277  Sum_probs=166.3

Q ss_pred             CccCCC-CEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKD-EHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG-~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+++. +.+++++.||.++|||+.. .+++..++. |...|.++.|++..+..+++++.|++|++||..-... +.+++
T Consensus        67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~  144 (311)
T KOG0277|consen   67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFN  144 (311)
T ss_pred             eecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCCcc-eEeec
Confidence            466654 5788899999999999643 346777775 6666778999998887899999999999999976663 78899


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CceeeEeeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCC
Q 006743           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt-gk~v~~i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      +|...|+..+|+| .+++|++++.|+++++||++. ++.+.+..|...|.|+.|+. +.++|++|+.|+.|++||+++..
T Consensus       145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r  224 (311)
T KOG0277|consen  145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR  224 (311)
T ss_pred             CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence            9999999999999 899999999999999999986 55555557889999999998 56788899999999999999998


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .|+..+.  +|.-.|..+.|+|.           ...+|++++.|-+++|||..
T Consensus       225 ~pl~eL~--gh~~AVRkvk~Sph-----------~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  225 TPLFELN--GHGLAVRKVKFSPH-----------HASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             ccceeec--CCceEEEEEecCcc-----------hhhHhhhccccceEEecccc
Confidence            8888775  99999999999995           45567788999999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.1e-21  Score=203.25  Aligned_cols=189  Identities=14%  Similarity=0.261  Sum_probs=169.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |-|.|++|++++.|.+|++|++.++-++..+.+ |.+.|+.++.+.||. ++++++.|.+|++|-+.++.+ ...++.|.
T Consensus       201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~-k~~lR~hE  277 (406)
T KOG0295|consen  201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQC-KAELREHE  277 (406)
T ss_pred             EEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCee-EEEecCCCceEEEEEeccchh-hhhhhccc
Confidence            567899999999999999999999999999997 667899999999998 999999999999999998875 35688999


Q ss_pred             CCeEEEEEcCC---------------CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           82 APTAGISFSSD---------------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        82 ~~VtsLafSPd---------------g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                      .+|.|++|.|.               +.++.+++.|++|++||+.++.++.++ +|...|..++|+|.|+||+++..|++
T Consensus       278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT  357 (406)
T ss_pred             cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence            99999999763               258999999999999999999999887 79999999999999999999999999


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +++||+++. ++.+.+.  .|..-|++++|+.+            ..++++|+.|.++++|.-
T Consensus       358 lrvwdl~~~-~cmk~~~--ah~hfvt~lDfh~~------------~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  358 LRVWDLKNL-QCMKTLE--AHEHFVTSLDFHKT------------APYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEEEeccc-eeeeccC--CCcceeEEEecCCC------------CceEEeccccceeeeeec
Confidence            999999988 5556666  78999999999984            346777799999999964

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=3.5e-23  Score=219.44  Aligned_cols=252  Identities=17%  Similarity=0.190  Sum_probs=215.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |+.+|++|+.|+..|.|..+|+.+++..+++.  ..+.|+++.|..+.+  +++......++|||-.+.+  +++++.| 
T Consensus       137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~GtE--lHClk~~-  209 (545)
T KOG1272|consen  137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGTE--LHCLKRH-  209 (545)
T ss_pred             ecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchH--HHHhhhhceEEEecCCCcE--Eeehhhc-
Confidence            67899999999999999999999999999887  567889999998876  5566788999999998877  7888887 


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..|..+.|.|...+|++++..|.+++.|+.+|+.+..+ ...+.+..|+.+|.+.++-+|..+|+|.+|........+++
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            56999999999999999999999999999999999887 46788999999999999999999999999999988666666


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccccccccC---CCCCCccCCCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSG---SRPNSRSGPSAE  237 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s~a~ss---s~sslt~~ssG~  237 (633)
                      ++   |.++|.+|+++++|+            ++++.+.|+.|+|||+|.+..+.++.++.+...   ++..+.+.+.|.
T Consensus       290 Lc---H~g~V~siAv~~~G~------------YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~  354 (545)
T KOG1272|consen  290 LC---HRGPVSSIAVDRGGR------------YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGD  354 (545)
T ss_pred             Hh---cCCCcceEEECCCCc------------EEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCC
Confidence            65   999999999999554            555567899999999999998777766444433   566777888888


Q ss_pred             CCccccCC----CCCCCCcccccCCCCCcceeecCCCCCCCCCcccccCcccccCcC
Q 006743          238 ASSLTVGG----TGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPI  290 (633)
Q Consensus       238 ~ssi~~~s----t~e~tP~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsPl~dv~p~  290 (633)
                      ...++...    ...++||++|...+ ++..|+              |||++||==|
T Consensus       355 ~v~iw~d~~~~s~~~~~pYm~H~~~~-~V~~l~--------------FcP~EDvLGI  396 (545)
T KOG1272|consen  355 HVQIWKDALKGSGHGETPYMNHRCGG-PVEDLR--------------FCPYEDVLGI  396 (545)
T ss_pred             eeeeehhhhcCCCCCCcchhhhccCc-ccccce--------------eccHHHeeec
Confidence            88776543    35789999999885 888888              8999997544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.1e-21  Score=213.62  Aligned_cols=197  Identities=16%  Similarity=0.252  Sum_probs=175.6

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~   82 (633)
                      -..-+++++|+.|..|+||+.++++.+..|.. |.+-|++|+.+|... +++++++|-+|++||.+..-...+++.+|..
T Consensus        64 iaRknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H  141 (794)
T KOG0276|consen   64 IARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEH  141 (794)
T ss_pred             eeccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence            34467899999999999999999999999997 778899999999998 8999999999999999887766889999999


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCC--CEEEEEEcCCeEEEEECCCCCCce
Q 006743           83 PTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD--WILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        83 ~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG--~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      .|.+++|+| |.+.|++++-|++|++|.+....+..++ +|...|+|+++-+.|  -+|++|+.|.+|+|||..+. .++
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV  220 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCV  220 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHH
Confidence            999999999 9999999999999999999998887777 699999999998844  69999999999999999987 667


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss  216 (633)
                      .++.  +|...|..++|+|.            -.++++|+.||+++||+-..|.--..
T Consensus       221 ~TLe--GHt~Nvs~v~fhp~------------lpiiisgsEDGTvriWhs~Ty~lE~t  264 (794)
T KOG0276|consen  221 QTLE--GHTNNVSFVFFHPE------------LPIIISGSEDGTVRIWNSKTYKLEKT  264 (794)
T ss_pred             HHhh--cccccceEEEecCC------------CcEEEEecCCccEEEecCcceehhhh
Confidence            7777  89999999999995            44566668899999998876654443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.3e-21  Score=219.61  Aligned_cols=191  Identities=19%  Similarity=0.268  Sum_probs=150.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC--------------------------------C-----------------------
Q 006743            2 YNCKDEHLASISLSGDLILHNLAS--------------------------------G-----------------------   26 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~t--------------------------------g-----------------------   26 (633)
                      |++||+|||+||.||.|+||.+..                                .                       
T Consensus       275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~  354 (712)
T KOG0283|consen  275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA  354 (712)
T ss_pred             eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence            899999999999999999998754                                0                       


Q ss_pred             -----ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEe
Q 006743           27 -----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVG  100 (633)
Q Consensus        27 -----k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS  100 (633)
                           ++++.|.+ |..-|-+|.|+.++  +|++++.|++|+||++....+  ..+..|...|+||+|+| |.++|++|+
T Consensus       355 f~f~ekP~~ef~G-Ht~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C--L~~F~HndfVTcVaFnPvDDryFiSGS  429 (712)
T KOG0283|consen  355 FVFSEKPFCEFKG-HTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC--LKVFSHNDFVTCVAFNPVDDRYFISGS  429 (712)
T ss_pred             ccccccchhhhhc-cchhheecccccCC--eeEeccccccEEeecCCCcce--eeEEecCCeeEEEEecccCCCcEeecc
Confidence                 01224444 44456679999875  799999999999999987774  34678999999999999 999999999


Q ss_pred             CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC------CCCeeEEE
Q 006743          101 LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS------SEAVSSLC  174 (633)
Q Consensus       101 ~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H------~~~VtsLa  174 (633)
                      -||.|+||++...+.+.......-|++++|.|||++.++|+.+|.+++|+.+..+ .........|      ...|+++.
T Consensus       430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~rITG~Q  508 (712)
T KOG0283|consen  430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGKRITGLQ  508 (712)
T ss_pred             cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCccccCceeeeeE
Confidence            9999999999998888887788999999999999999999999999999998763 2222221111      23799999


Q ss_pred             EccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       175 fsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |.|...          . .++..+.|..|+|+|.+
T Consensus       509 ~~p~~~----------~-~vLVTSnDSrIRI~d~~  532 (712)
T KOG0283|consen  509 FFPGDP----------D-EVLVTSNDSRIRIYDGR  532 (712)
T ss_pred             ecCCCC----------C-eEEEecCCCceEEEecc
Confidence            998421          1 23333447777777773

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.88  E-value=1.8e-20  Score=183.83  Aligned_cols=192  Identities=20%  Similarity=0.318  Sum_probs=162.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|++++++|++++.||.|++|++.+++....+.. +...+..+.|.++++ +|++++.||.|++||+...+. ...+..|
T Consensus        16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~-~~~~~~~   92 (289)
T cd00200          16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC-VRTLTGH   92 (289)
T ss_pred             EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCcccc-eEEEecc
Confidence            4789999999999999999999998887777765 556677799999986 799999999999999987653 5667789


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...|.+++|+++++++++++.|+.|++||+++++....+. |...+.+++|+|++.++++++.||.|++||++.. ++..
T Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~  171 (289)
T cd00200          93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVA  171 (289)
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccce
Confidence            8899999999998889988889999999999888777664 8889999999999999999888999999999866 3344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .+.  .|...|.+++|+|+++.++            .++.|+.|++||++.
T Consensus       172 ~~~--~~~~~i~~~~~~~~~~~l~------------~~~~~~~i~i~d~~~  208 (289)
T cd00200         172 TLT--GHTGEVNSVAFSPDGEKLL------------SSSSDGTIKLWDLST  208 (289)
T ss_pred             eEe--cCccccceEEECCCcCEEE------------EecCCCcEEEEECCC
Confidence            444  6888999999999654443            334589999999865

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.9e-21  Score=190.82  Aligned_cols=202  Identities=17%  Similarity=0.275  Sum_probs=172.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |+-+|+|.++++.|.+|++||...+.+++++.+ |+..|..++.+.|+. .|++|+.|+.|.+||+.+++. .+.+.+|.
T Consensus        25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGkv-~Rr~rgH~  101 (307)
T KOG0316|consen   25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGKV-DRRFRGHL  101 (307)
T ss_pred             EccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeecccccccc-ccccCCCCceEEEEEcccCee-eeeccccc
Confidence            789999999999999999999999999999997 667778888888877 799999999999999999984 78899999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      +.|+.++|+.+...+++|+.|.++++||.|+.  ++++++ .....|.++...  +..|++|+.||+++.||+|.+.   
T Consensus       102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~---  176 (307)
T KOG0316|consen  102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT---  176 (307)
T ss_pred             ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce---
Confidence            99999999999999999999999999999864  566766 467889998886  6789999999999999999873   


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEec--------------------------------cCCCCeEEEEeeCCCeEEcc
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDET--------------------------------TCKAETALLGGAVGDSILMP  206 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s--------------------------------~~sd~~lLlSgs~Dg~IkIW  206 (633)
                       ... -.-..+|++++|+++++..+.++                                -......+++|+.||.|.+|
T Consensus       177 -l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  177 -LSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             -eeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence             111 13457899999999999876432                                22345578999999999999


Q ss_pred             CCCCCCC
Q 006743          207 DPLPSVT  213 (633)
Q Consensus       207 Dlr~~~~  213 (633)
                      |+.....
T Consensus       255 dLvd~~~  261 (307)
T KOG0316|consen  255 DLVDETQ  261 (307)
T ss_pred             Eecccee
Confidence            9965443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.88  E-value=8.5e-21  Score=223.75  Aligned_cols=192  Identities=18%  Similarity=0.293  Sum_probs=160.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC----c----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASG----A----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tg----k----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      +|+++|++||+|+.|+.|+|||+...    .    .+..+.  +...+.+++|++....+|++++.||+|+|||+.+.+.
T Consensus       490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~  567 (793)
T PLN00181        490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL  567 (793)
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            48999999999999999999997532    1    122232  2356788999986555899999999999999987763


Q ss_pred             eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEe-cCCCEEEEEEcCCeEEEEE
Q 006743           73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFI-DDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafS-PdG~~LatGs~DGsV~IWD  150 (633)
                       +..+.+|...|++++|+| ++.+|++|+.|++|++||++++..+..+.+...|.++.|+ +++.+|++|+.||.|++||
T Consensus       568 -~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD  646 (793)
T PLN00181        568 -VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD  646 (793)
T ss_pred             -EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence             567889999999999997 8899999999999999999999888887777789999996 4799999999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +++...++..+.  +|...|.++.|.+             +.++++++.|+.|++||++.
T Consensus       647 ~~~~~~~~~~~~--~h~~~V~~v~f~~-------------~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        647 LRNPKLPLCTMI--GHSKTVSYVRFVD-------------SSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCCCCccceEec--CCCCCEEEEEEeC-------------CCEEEEEECCCEEEEEeCCC
Confidence            998654454444  7999999999952             23567778899999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=3.6e-21  Score=213.30  Aligned_cols=198  Identities=15%  Similarity=0.256  Sum_probs=169.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|||+++|+|+.||+|+|||...+-+..+|.. |...|+.++|...++ .+++.+-||+|+.||+.............
T Consensus       357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCC
Confidence            5899999999999999999999999999999986 677889999999997 89999999999999997766433222233


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DG-tVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ...-.|++..|.|.+++.|+.|. .|++|++++|+.+-.+ +|+++|.+++|+|++..|++++.|.+|++||+-.....+
T Consensus       435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v  514 (893)
T KOG0291|consen  435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV  514 (893)
T ss_pred             ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence            44568899999999999999998 6999999999999888 799999999999999999999999999999998765555


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s  215 (633)
                      ..+.   +..-+..++|.|+|+.|+..            ..||.|.+||+.......
T Consensus       515 Etl~---i~sdvl~vsfrPdG~elaVa------------TldgqItf~d~~~~~q~~  556 (893)
T KOG0291|consen  515 ETLE---IRSDVLAVSFRPDGKELAVA------------TLDGQITFFDIKEAVQVG  556 (893)
T ss_pred             eeEe---eccceeEEEEcCCCCeEEEE------------EecceEEEEEhhhceeec
Confidence            5555   77889999999987766554            569999999997655543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1e-20  Score=190.10  Aligned_cols=194  Identities=15%  Similarity=0.224  Sum_probs=162.8

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCCC---ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 006743            1 MYNCK-DEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVS   75 (633)
Q Consensus         1 AFSpd-G~~LaSgs~DG~I~IWDl~tg---k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~   75 (633)
                      ||+|- |..||+|+.|..|+||+...+   .+...+...|...|+.++|+|.|+ +|++|+.|.++.||.-...+ ..+.
T Consensus        21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~   99 (312)
T KOG0645|consen   21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVA   99 (312)
T ss_pred             EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEe
Confidence            57887 889999999999999998743   344556667889999999999998 99999999999999886544 2377


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~---v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      .+.+|...|.|++|+++|++||+|++|+.|.||.+..+..   ...+ .|...|..+.|+|....|++++.|.+|++|+-
T Consensus       100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence            8999999999999999999999999999999999985543   3344 59999999999999999999999999999987


Q ss_pred             CCCC--CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          152 RGKP--QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       152 rs~~--k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ....  .++..+.  +|...|.+++|++.|.            .|++++.|++++||..+
T Consensus       180 ~~dddW~c~~tl~--g~~~TVW~~~F~~~G~------------rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  180 EDDDDWECVQTLD--GHENTVWSLAFDNIGS------------RLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             cCCCCeeEEEEec--CccceEEEEEecCCCc------------eEEEecCCcceEeeeec
Confidence            7332  2344444  8999999999999654            45555789999999765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.87  E-value=1.7e-20  Score=184.08  Aligned_cols=188  Identities=21%  Similarity=0.398  Sum_probs=160.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |+++++++++++.||.|++||+.+++....+.. +...+.+++|++++. ++++++.|+.|++||+...+. ...+..|.
T Consensus       101 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~  177 (289)
T cd00200         101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC-VATLTGHT  177 (289)
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc-ceeEecCc
Confidence            677888888888899999999998888888874 566789999999976 788877799999999987664 55677888


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..|.+++|+|+++.+++++.|+.|++||++.++.+..+ .+...+.+++|+|++.++++++.||.|++||+++. .+...
T Consensus       178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~  256 (289)
T cd00200         178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQT  256 (289)
T ss_pred             cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEE
Confidence            89999999999999999999999999999998888877 78889999999999888888888999999999875 34444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +.  .|...|.+++|+++++            ++++++.|+.+++||
T Consensus       257 ~~--~~~~~i~~~~~~~~~~------------~l~~~~~d~~i~iw~  289 (289)
T cd00200         257 LS--GHTNSVTSLAWSPDGK------------RLASGSADGTIRIWD  289 (289)
T ss_pred             cc--ccCCcEEEEEECCCCC------------EEEEecCCCeEEecC
Confidence            44  7888999999999544            455557799999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1e-21  Score=209.55  Aligned_cols=202  Identities=19%  Similarity=0.247  Sum_probs=173.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |..||++||.|+..|.|+|||..+...+..+.. |..++..+.|+|++...|++|++|+.+++||+.+... ...+.+|+
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~ht  153 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHT  153 (487)
T ss_pred             eecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCc
Confidence            678999999999999999999766556667765 7788999999999998999999999999999998874 56789999


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        82 ~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg-k~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      +.|.|.+|+| ++.++++|+.||+|++||++.. ..+..+.|+.+|..+.+-|.|..|++++. ..|+|||+-++.+.+.
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT  232 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh
Confidence            9999999999 7779999999999999999987 77788899999999999999999998876 5699999997654333


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCccccc
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLS  220 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s  220 (633)
                      ...  .|...|+|+++..            ++..|++++-|+.|++||+..+....+..-+
T Consensus       233 ~~~--~H~KtVTcL~l~s------------~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~  279 (487)
T KOG0310|consen  233 SMF--NHNKTVTCLRLAS------------DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP  279 (487)
T ss_pred             hhh--cccceEEEEEeec------------CCceEeecccccceEEEEccceEEEEeeecc
Confidence            332  5999999999876            4577888899999999998888776655444

>PTZ00420 coronin; Provisional

Probab=99.87  E-value=2.8e-20  Score=210.04  Aligned_cols=195  Identities=12%  Similarity=0.185  Sum_probs=150.9

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCCCc--------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 006743            1 MYNCK-DEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS   71 (633)
Q Consensus         1 AFSpd-G~~LaSgs~DG~I~IWDl~tgk--------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~   71 (633)
                      +|+|+ +++|++|+.||.|+|||+.++.        .+..+.+ |...|.+++|+|++..+|++++.|++|+|||+++..
T Consensus        81 afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~  159 (568)
T PTZ00420         81 QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK  159 (568)
T ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc
Confidence            48886 7899999999999999997642        2334554 667899999999988677899999999999999877


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEE-----EEEecCCCEEEEEEcCC-
Q 006743           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS-----LAFIDDDWILTAGTSNG-  144 (633)
Q Consensus        72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~Its-----LafSPdG~~LatGs~DG-  144 (633)
                      . +..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+ .|.+.+.+     ..|++++.+|++++.|+ 
T Consensus       160 ~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~  237 (568)
T PTZ00420        160 R-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN  237 (568)
T ss_pred             E-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence            4 33343 6678999999999999999999999999999999888766 57665433     23458889999988774 


Q ss_pred             ---eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          145 ---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       145 ---sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                         .|+|||+++...++..+....+.+.+.. .|.+           +++.++++|..|+.|++|++..
T Consensus       238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~-----------~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        238 NMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDE-----------STGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             CccEEEEEECCCCCCceEEEEecCCccceEE-eeeC-----------CCCCEEEEEECCCeEEEEEccC
Confidence               7999999976566665543233332222 2222           3577788888999999999964

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.86  E-value=2.6e-21  Score=206.27  Aligned_cols=190  Identities=17%  Similarity=0.291  Sum_probs=162.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+.+|..+++++.|+.|++||+++|+++..+.  .+.++.|+.|+|++.++|++|+.|+.|+.||++.++ .++.+..|
T Consensus       265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~h  341 (503)
T KOG0282|consen  265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRH  341 (503)
T ss_pred             hccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhh
Confidence            589999999999999999999999999999887  567889999999998899999999999999999998 47778889


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-----------------------------------------
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----------------------------------------  119 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-----------------------------------------  119 (633)
                      -+.|..+.|-++++++++.++|+.++||+.+.+.++..+                                         
T Consensus       342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n  421 (503)
T KOG0282|consen  342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN  421 (503)
T ss_pred             hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence            999999999999999999999999999997654322111                                         


Q ss_pred             ------eC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006743          120 ------TY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE  191 (633)
Q Consensus       120 ------~h--~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~  191 (633)
                            +|  .+.-..+.|+|||.+|++|..||.|.+||.++. +.+..+.  +|.+++..+.|+|.           ..
T Consensus       422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk--ah~~~ci~v~wHP~-----------e~  487 (503)
T KOG0282|consen  422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK--AHDQPCIGVDWHPV-----------EP  487 (503)
T ss_pred             HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc--cCCcceEEEEecCC-----------Cc
Confidence                  01  123446889999999999999999999999987 4455555  78999999999995           34


Q ss_pred             eEEEEeeCCCeEEccC
Q 006743          192 TALLGGAVGDSILMPD  207 (633)
Q Consensus       192 ~lLlSgs~Dg~IkIWD  207 (633)
                      ..+++++.||.|++||
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            4567777899999997

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.86  E-value=1.5e-20  Score=199.85  Aligned_cols=189  Identities=23%  Similarity=0.371  Sum_probs=160.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCce-----------------------------------------eEEEeCCCCCcE
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAK-----------------------------------------AAELKDPNEQVL   40 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~-----------------------------------------v~~~~~~~~~~V   40 (633)
                      |+.+|.||++++.||++.+||..++..                                         +.++.+ |...|
T Consensus       284 Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V  362 (524)
T KOG0273|consen  284 WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEV  362 (524)
T ss_pred             EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCce
Confidence            788999999999999999999855432                                         223444 66678


Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCC---------CEEEEEeCCCeEEEEeCC
Q 006743           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD---------KIIASVGLDKKLYTYDPG  111 (633)
Q Consensus        41 ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg---------~~LaSgS~DGtVrIWDlr  111 (633)
                      .+|.|+|.+. +|+++++|++++||....... .+.+..|...|+.+.|+|.+         ..+++++.|++|++||+.
T Consensus       363 ~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~  440 (524)
T KOG0273|consen  363 NALKWNPTGS-LLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE  440 (524)
T ss_pred             EEEEECCCCc-eEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence            8999999998 999999999999999866553 67899999999999998854         479999999999999999


Q ss_pred             CCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          112 SRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       112 tgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                      .+.++..+ .|..+|++++|+|+|+++|+|+.||.|++|+++..    +.++.+...+.|..++|+.+|.+|..+     
T Consensus       441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----~l~~s~~~~~~Ifel~Wn~~G~kl~~~-----  511 (524)
T KOG0273|consen  441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----KLVKSYQGTGGIFELCWNAAGDKLGAC-----  511 (524)
T ss_pred             CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----heeEeecCCCeEEEEEEcCCCCEEEEE-----
Confidence            99999988 89999999999999999999999999999999988    344445567889999999876555444     


Q ss_pred             CeEEEEeeCCCeEEccCCC
Q 006743          191 ETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIWDlr  209 (633)
                             ..|+.+++-|+|
T Consensus       512 -------~sd~~vcvldlr  523 (524)
T KOG0273|consen  512 -------ASDGSVCVLDLR  523 (524)
T ss_pred             -------ecCCCceEEEec
Confidence                   558888888876

>PTZ00420 coronin; Provisional

Probab=99.86  E-value=5.6e-20  Score=207.65  Aligned_cols=188  Identities=15%  Similarity=0.162  Sum_probs=145.7

Q ss_pred             EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-------eeEEeccCCCCe
Q 006743           12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------KVSWLKQHSAPT   84 (633)
Q Consensus        12 gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-------~v~~l~~H~~~V   84 (633)
                      |+.++.|++|+......+..+.+ |...|.+++|+|+..++|++|+.||+|+|||+.....       .+..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            45577899999877777777776 6678899999998545999999999999999975321       234578899999


Q ss_pred             EEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743           85 AGISFSSDDKI-IASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (633)
Q Consensus        85 tsLafSPdg~~-LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~  163 (633)
                      .+++|+|++.. |++++.|++|++||+++++.+..+.+...|.+++|+|+|.+|++++.|+.|+|||++++. .+..+. 
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~-  206 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFH-  206 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEe-
Confidence            99999997765 578999999999999999887777777889999999999999999999999999999873 344444 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCC----CeEEccCCCC
Q 006743          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG----DSILMPDPLP  210 (633)
Q Consensus       164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~D----g~IkIWDlr~  210 (633)
                       +|.+.+.+..+...       +...++.++++++.|    +.|+|||++.
T Consensus       207 -gH~g~~~s~~v~~~-------~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        207 -IHDGGKNTKNIWID-------GLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             -cccCCceeEEEEee-------eEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence             78776654433210       011233444544444    4899999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=5.8e-21  Score=212.30  Aligned_cols=200  Identities=18%  Similarity=0.291  Sum_probs=163.5

Q ss_pred             CCCEEEEEECCCcEEEEECCC---CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            5 KDEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~t---gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      +.++||+++..|.|.+||+..   .+.+..|.. |...+.+++|++...++|++|++||+|++||++..+. ..++.+..
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nS  176 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNS  176 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccc
Confidence            356899999999999999976   445555554 7778899999999999999999999999999988774 56677788


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCc
Q 006743           82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP  157 (633)
Q Consensus        82 ~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-~k~  157 (633)
                      ..|++|+|+| .+++|+++.+.|.|.+||+|.. ++...+ +|.++|.|+.|+|++.+||+|+.|+.|+|||+... .++
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            8999999999 8999999999999999999974 344333 79999999999999999999999999999999853 344


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeC--CCeEEccCCC-CCCCCCccccc
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV--GDSILMPDPL-PSVTTSSVSLS  220 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~--Dg~IkIWDlr-~~~~~ss~s~s  220 (633)
                      ..++.   -..+|.+|.|-|..++           .|.+++.  |-.|.|||++ ||.|-..+...
T Consensus       257 ~~tIn---Tiapv~rVkWRP~~~~-----------hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH  308 (839)
T KOG0269|consen  257 KHTIN---TIAPVGRVKWRPARSY-----------HLATCSMVVDTSVHVWDVRRPYIPYATFLEH  308 (839)
T ss_pred             eeEEe---ecceeeeeeeccCccc-----------hhhhhhccccceEEEEeeccccccceeeecc
Confidence            44444   4578999999997543           2333333  8899999996 77776665554

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=1e-19  Score=203.45  Aligned_cols=197  Identities=16%  Similarity=0.196  Sum_probs=150.7

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCcee-------------EEEeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKA-------------AELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTT   68 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v-------------~~~~~~~~~~VssLafSp-dg~~lLaSGs~DGtI~IWDl~   68 (633)
                      ++++..+++++.+..+..|+...+..+             ..+. +|...|.+++|+| ++. +|++|+.|++|+|||+.
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~  106 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIP  106 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecC
Confidence            456566666666666667765443222             1244 3677899999999 555 89999999999999997


Q ss_pred             CCC------ceeEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEE
Q 006743           69 GRS------PKVSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAG  140 (633)
Q Consensus        69 t~~------~~v~~l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatG  140 (633)
                      ...      ..+..+.+|...|.+++|+|+ +++|++++.|++|+|||+++++.+..+ .|...|.+++|+|+|.+|+++
T Consensus       107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatg  186 (493)
T PTZ00421        107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT  186 (493)
T ss_pred             CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence            542      235678899999999999996 479999999999999999999887776 488999999999999999999


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          141 TSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       141 s~DGsV~IWDlrs~~k~v~~l~~~~H~~~-VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      +.|+.|+|||++++. .+..+.  +|.+. +..+.|.+++..+++++.        +.+.|+.|++||++...
T Consensus       187 s~Dg~IrIwD~rsg~-~v~tl~--~H~~~~~~~~~w~~~~~~ivt~G~--------s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        187 SKDKKLNIIDPRDGT-IVSSVE--AHASAKSQRCLWAKRKDLIITLGC--------SKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             cCCCEEEEEECCCCc-EEEEEe--cCCCCcceEEEEcCCCCeEEEEec--------CCCCCCeEEEEeCCCCC
Confidence            999999999999874 344444  66654 456778886555544311        12358999999998644

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.85  E-value=8.9e-20  Score=196.06  Aligned_cols=182  Identities=20%  Similarity=0.341  Sum_probs=148.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------   73 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------   73 (633)
                      |+|||.++|+++.||+|.|||-.+|+.+.++..  .|.+.|.+|.|+||+. .|++++.|++++|||+.+.+..      
T Consensus       198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecC
Confidence            899999999999999999999999999999872  4778899999999998 7999999999999999765422      


Q ss_pred             ------------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 006743           74 ------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS  117 (633)
Q Consensus        74 ------------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~  117 (633)
                                                          .+.+.+|...|+++..++++++|++|+.||.|.-||..++..-+
T Consensus       277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence                                                22467899999999999999999999999999999984332100


Q ss_pred             -------------------------------Ee-----------------------------------------------
Q 006743          118 -------------------------------CI-----------------------------------------------  119 (633)
Q Consensus       118 -------------------------------~i-----------------------------------------------  119 (633)
                                                     .+                                               
T Consensus       357 ~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~  436 (603)
T KOG0318|consen  357 LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK  436 (603)
T ss_pred             cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc
Confidence                                           00                                               


Q ss_pred             ----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          120 ----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       120 ----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                          .......+++++|++..+++|+.||.|+||.+..... ........|.++|++++|+|++.||+++
T Consensus       437 ~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~  505 (603)
T KOG0318|consen  437 VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAG  505 (603)
T ss_pred             ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEe
Confidence                0011133678999999999999999999999987542 2233334799999999999999888855

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.85  E-value=1.4e-19  Score=213.38  Aligned_cols=190  Identities=20%  Similarity=0.356  Sum_probs=155.0

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |++ ++.+|++++.||.|+|||+.+++.+..+.+ |...|.+++|+|.+..+|++|+.||+|++||+..... +..+..+
T Consensus       540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~  617 (793)
T PLN00181        540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK  617 (793)
T ss_pred             eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC
Confidence            554 478999999999999999999988888876 6677899999974334899999999999999987764 4445544


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeE-eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC--
Q 006743           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSC-ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP--  155 (633)
Q Consensus        81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~-i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~--  155 (633)
                       ..|.++.|++ ++.+|++|+.|+.|++||+++.+ .+.. .+|...|.+++|. ++.+|++++.|+.|+|||++...  
T Consensus       618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence             6799999965 89999999999999999998765 3333 3688999999997 78899999999999999998531  


Q ss_pred             ---CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          156 ---QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       156 ---k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                         .++..+.  +|...+.+++|++++.            ++++++.|+.|++|+..
T Consensus       696 ~~~~~l~~~~--gh~~~i~~v~~s~~~~------------~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        696 INETPLHSFM--GHTNVKNFVGLSVSDG------------YIATGSETNEVFVYHKA  738 (793)
T ss_pred             cCCcceEEEc--CCCCCeeEEEEcCCCC------------EEEEEeCCCEEEEEECC
Confidence               3444444  7999999999999654            45555779999999865

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.85  E-value=1.4e-21  Score=201.16  Aligned_cols=182  Identities=19%  Similarity=0.303  Sum_probs=158.2

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEeccCC
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWLKQHS   81 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--~v~~l~~H~   81 (633)
                      .+.+.|++|+.|.+|+|||+++++++..+-. |.+.|-.+.|+..   ++++++.|.+|.|||+.....  ..+.+.+|.
T Consensus       245 yd~rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr  320 (499)
T KOG0281|consen  245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  320 (499)
T ss_pred             ccceEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence            4567889999999999999999999988874 6666777888743   899999999999999976542  245678999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..|+.+.|+  .++|++++.|.+|++|++.++..++++ +|...|.|+.+.  ++++++|+.|.+|++||+..+ .++++
T Consensus       321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G-~cLRv  395 (499)
T KOG0281|consen  321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRV  395 (499)
T ss_pred             hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc-HHHHH
Confidence            999999997  679999999999999999999999988 699999999885  889999999999999999988 56677


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +.  +|..-|.|+.|+              ...+++|+.||+|+|||+..
T Consensus       396 Le--GHEeLvRciRFd--------------~krIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  396 LE--GHEELVRCIRFD--------------NKRIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             Hh--chHHhhhheeec--------------CceeeeccccceEEEEeccc
Confidence            77  899999999994              45788889999999999854

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=8e-21  Score=196.92  Aligned_cols=199  Identities=15%  Similarity=0.181  Sum_probs=171.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+..|++||+++.|=.+++||..+ .++++...+ |...|.+++|-|.|. +|++++.|.+|++|++.++.+ +.++.+
T Consensus       157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~c-v~t~~~  233 (406)
T KOG0295|consen  157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYC-VKTFPG  233 (406)
T ss_pred             EEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cccceeeEEEEecCC-eeeecccccceeEEeccccee-EEeccC
Confidence            3778899999999999999999876 345555554 778899999999997 899999999999999999886 688999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecC---------------CCEEEEEEcC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD---------------DWILTAGTSN  143 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPd---------------G~~LatGs~D  143 (633)
                      |...|.-++.+.||.++++++.|.+|++|-+.++++...+ .|+.+|.|++|.|.               +.++++++.|
T Consensus       234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence            9999999999999999999999999999999999887777 69999999999883               3589999999


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       144 GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      ++|++||+.++. ++..+.  +|..+|..++|+|.|+||++            +..|+++++||++...+....
T Consensus       314 ktIk~wdv~tg~-cL~tL~--ghdnwVr~~af~p~Gkyi~S------------caDDktlrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  314 KTIKIWDVSTGM-CLFTLV--GHDNWVRGVAFSPGGKYILS------------CADDKTLRVWDLKNLQCMKTL  372 (406)
T ss_pred             ceEEEEeccCCe-EEEEEe--cccceeeeeEEcCCCeEEEE------------EecCCcEEEEEeccceeeecc
Confidence            999999999984 344444  89999999999996655555            477999999999876654443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=6.5e-20  Score=201.21  Aligned_cols=204  Identities=18%  Similarity=0.293  Sum_probs=165.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .|+++|.+|++|..+|.|.|||..+.+.+..+.++|...|.+++|+.   +.+.+|+.|+.|..+|++..+..+..+.+|
T Consensus       224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H  300 (484)
T KOG0305|consen  224 KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGH  300 (484)
T ss_pred             EECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence            48899999999999999999999999999999987889999999993   379999999999999998887666668899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecC-CCEEEEEE--cCCeEEEEECCCCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD-DWILTAGT--SNGRVVFYDIRGKPQ  156 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPd-G~~LatGs--~DGsV~IWDlrs~~k  156 (633)
                      ...|+.+.|++|++++++|+.|+.|.|||.....+...+ .|.++|.+++|+|. ...||+|+  .|+.|++||..++. 
T Consensus       301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-  379 (484)
T KOG0305|consen  301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-  379 (484)
T ss_pred             cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-
Confidence            999999999999999999999999999999776665554 79999999999994 56788765  59999999999873 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEec--------------------------------cCCCCeEEEEeeCCCeEE
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDET--------------------------------TCKAETALLGGAVGDSIL  204 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s--------------------------------~~sd~~lLlSgs~Dg~Ik  204 (633)
                         .+....-...|++|.|++..+.|++..                                ...++..+++++.|.+++
T Consensus       380 ---~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  380 ---RIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLR  456 (484)
T ss_pred             ---EecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence               233333556777777777665444321                                233555666667777777


Q ss_pred             ccCCCCC
Q 006743          205 MPDPLPS  211 (633)
Q Consensus       205 IWDlr~~  211 (633)
                      +|++-..
T Consensus       457 fw~~f~~  463 (484)
T KOG0305|consen  457 FWNLFDE  463 (484)
T ss_pred             eccccCC
Confidence            7776544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.84  E-value=7e-20  Score=190.78  Aligned_cols=192  Identities=17%  Similarity=0.271  Sum_probs=166.2

Q ss_pred             CEEEEEECCCcEEEEECCCCceeE----EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-------------
Q 006743            7 EHLASISLSGDLILHNLASGAKAA----ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-------------   69 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~----~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t-------------   69 (633)
                      ..+++++.|.++++|.++.+....    ..+ +|...|.+|...+++. .+++|+.|.+|.||+...             
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhh
Confidence            368999999999999998765432    222 4778888999999998 899999999999999311             


Q ss_pred             -----------CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEE
Q 006743           70 -----------RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        70 -----------~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~La  138 (633)
                                 ...++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.....+.|+.++|..+.|+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~  316 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA  316 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence                       0112567889999999999996 7889999999999999999999999998999999999999999999


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      +|+.|..|++||.|++...+......+|...|.++.|+|.           +..+|++++.|+++++||+|...
T Consensus       317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-----------~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-----------NEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----------CceEEEEEecCCeEEEEEeccCC
Confidence            9999999999999998766666677799999999999996           66778899999999999998655

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=8.6e-20  Score=182.16  Aligned_cols=186  Identities=17%  Similarity=0.269  Sum_probs=161.0

Q ss_pred             CCCcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-
Q 006743           14 LSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-   91 (633)
Q Consensus        14 ~DG~I~IWDl~tgk~v~~~~~~-~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-   91 (633)
                      ..|++.|.++.+.+.+.++..- ..+.+..|+|+++..+.+++++.||.++|||+.....+++.+++|..+|.++.|++ 
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence            4689999999766666555421 35778899999998889999999999999998777777899999999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 006743           92 DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA  169 (633)
Q Consensus        92 dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~  169 (633)
                      +...+++++.|++||+||...++.+.++ +|...|+..+|+| ..+.+++++.||++++||++...+.+. +.  .|...
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~--ah~~E  192 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IE--AHNSE  192 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EE--eccce
Confidence            8888999999999999999988888877 6999999999999 578999999999999999998755444 33  78899


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       170 VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      |.|+.|+.-           +..++++++.|+.|+.||+|+...
T Consensus       193 il~cdw~ky-----------~~~vl~Tg~vd~~vr~wDir~~r~  225 (311)
T KOG0277|consen  193 ILCCDWSKY-----------NHNVLATGGVDNLVRGWDIRNLRT  225 (311)
T ss_pred             eEeeccccc-----------CCcEEEecCCCceEEEEehhhccc
Confidence            999999874           677888999999999999997764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.84  E-value=1.6e-20  Score=200.24  Aligned_cols=206  Identities=17%  Similarity=0.181  Sum_probs=165.2

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            2 YNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSp-dG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      |-| .+.+|++++.|+.|+||++.+ +++++.|.+ |...|++++|+.+|. .|++++.|++|++||++++.+..  ...
T Consensus       222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~--~f~  297 (503)
T KOG0282|consen  222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLS--RFH  297 (503)
T ss_pred             hccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCC-eeeeeecceeeeeeccccceEEE--EEe
Confidence            344 688999999999999999986 788899986 778899999999998 79999999999999999998533  233


Q ss_pred             CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           80 HSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        80 H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      -...++|+.|+|++ +.|++|+.|+.|+.||+|+++.++.+ .|-+.|..+.|-++|+++++.+.|+.|+||+.+..- +
T Consensus       298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~  376 (503)
T KOG0282|consen  298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-P  376 (503)
T ss_pred             cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-c
Confidence            44678999999966 89999999999999999999998888 478999999999999999999999999999998752 2


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEe-----------------------------------ccCCCCeEEEEeeCCCe
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDE-----------------------------------TTCKAETALLGGAVGDS  202 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~-----------------------------------s~~sd~~lLlSgs~Dg~  202 (633)
                      ++.+. ..+.-...++..+|+++++++.                                   ..+.|+.+|++|..||.
T Consensus       377 ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  377 IKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             chhhc-chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence            22111 1223344556666666655521                                   13557777888888999


Q ss_pred             EEccCCCCCCC
Q 006743          203 ILMPDPLPSVT  213 (633)
Q Consensus       203 IkIWDlr~~~~  213 (633)
                      +.+||-++..-
T Consensus       456 v~~wdwkt~kl  466 (503)
T KOG0282|consen  456 VNFWDWKTTKL  466 (503)
T ss_pred             EEEeechhhhh
Confidence            99999875443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=7.8e-20  Score=205.07  Aligned_cols=199  Identities=15%  Similarity=0.193  Sum_probs=171.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|.+..+++||.|-.|+||+..+.+++.++.+ |.+-|+.+.|++.-. +|+++++|.+|+||+..+.++ +.++.+|
T Consensus        58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~-iavltGH  134 (1202)
T KOG0292|consen   58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKC-IAVLTGH  134 (1202)
T ss_pred             eecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCce-EEEEecC
Confidence            5899999999999999999999999999999987 677889999999888 899999999999999999886 7889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------C--------------------ceeeE-e-eCCCCeEEEEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGS--------R--------------------RPSSC-I-TYEAPFSSLAF  130 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt--------g--------------------k~v~~-i-~h~~~ItsLaf  130 (633)
                      +..|.|..|+|....+++++-|.+||+||+..        +                    ..++. + +|...|+-++|
T Consensus       135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf  214 (1202)
T KOG0292|consen  135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF  214 (1202)
T ss_pred             ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence            99999999999999999999999999999842        1                    01111 1 58888999999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +|.-..|++|+.|+.|++|.+... +...+-...+|.+.|.++-|+|.            ..++++.+.|+.|+|||+..
T Consensus       215 hpTlpliVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~------------q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  215 HPTLPLIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPH------------QDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             cCCcceEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCc------------cceeEecCCCccEEEEeccc
Confidence            999999999999999999999865 34455555699999999999994            45666778899999999976


Q ss_pred             CCCCC
Q 006743          211 SVTTS  215 (633)
Q Consensus       211 ~~~~s  215 (633)
                      ..+..
T Consensus       282 Rt~v~  286 (1202)
T KOG0292|consen  282 RTSVQ  286 (1202)
T ss_pred             cccee
Confidence            65544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.83  E-value=7.9e-21  Score=194.19  Aligned_cols=175  Identities=19%  Similarity=0.282  Sum_probs=157.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-------~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      |+|||+||++|+.||.|.+||..+|+..+.++-       -+.+.|.|+.|+.|.. .+++|+.||.|+||.++++.+..
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClR  299 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLR  299 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHH
Confidence            899999999999999999999999986654431       2467899999999988 89999999999999999999876


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      +.-+.|...|+|+.|+.|+..+++++.|.++++.-+++|+++..+ +|...|+...|.+||.+|++++.||+|++|+.++
T Consensus       300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence            666799999999999999999999999999999999999999888 6999999999999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccC
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPd  178 (633)
                      . .++..++..+...+|.++-.-|.
T Consensus       380 t-eC~~Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  380 T-ECLSTFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             h-hhhhhccCCCCcccceeEEEcCC
Confidence            7 45666776677788888888774

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.83  E-value=1.2e-19  Score=192.47  Aligned_cols=196  Identities=20%  Similarity=0.307  Sum_probs=158.3

Q ss_pred             ccCCCC-EEEEEECCCcEEEEECCCCce-------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCc
Q 006743            2 YNCKDE-HLASISLSGDLILHNLASGAK-------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSP   72 (633)
Q Consensus         2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~-------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t-~~~   72 (633)
                      |++... +|++++.|+.|++||+.....       ...+. .|...|..++|++....+|+++++|+.+.|||++. ...
T Consensus       185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~  263 (422)
T KOG0264|consen  185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK  263 (422)
T ss_pred             cccccceeEeeccCCCcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence            565543 789999999999999975332       23344 48889999999999888999999999999999995 333


Q ss_pred             eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEEE
Q 006743           73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVF  148 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~I  148 (633)
                      ..+...+|.+.|+|++|+| ++..||+|+.|++|++||+|+.+ ++..+ .|+..|.+|.|+|+. .+|++++.|+.+.|
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV  343 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence            4677889999999999999 88999999999999999999743 34444 799999999999964 67888999999999


Q ss_pred             EECCCCCC-----------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          149 YDIRGKPQ-----------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       149 WDlrs~~k-----------~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ||+..-..           +.-.+..-||...|..+.|+|+.+++           +++.+.|+.+.||+..
T Consensus       344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~-----------I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT-----------IASVAEDNILQIWQMA  404 (422)
T ss_pred             EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE-----------EEEecCCceEEEeecc
Confidence            99975221           22234445899999999999986655           4456779999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.83  E-value=9.1e-20  Score=193.47  Aligned_cols=192  Identities=23%  Similarity=0.384  Sum_probs=157.6

Q ss_pred             CEEEEEECCCcEEEEECCCCce----------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-----
Q 006743            7 EHLASISLSGDLILHNLASGAK----------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-----   71 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~----------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-----   71 (633)
                      ..+|+++..+.|+|||.....-          -..+.+|.++ -..|.|++...-.|++++.|++|++||+....     
T Consensus       138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~  216 (422)
T KOG0264|consen  138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV  216 (422)
T ss_pred             cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc-ccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence            4677788899999999864321          1256665553 45699999887789999999999999995432     


Q ss_pred             -ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC--CceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCCe
Q 006743           72 -PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS--RRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGR  145 (633)
Q Consensus        72 -~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt--gk~v~~i-~h~~~ItsLafSPd-G~~LatGs~DGs  145 (633)
                       .+...+.+|...|..++|++ +..+|++++.|+.+.|||+|+  .++.... +|.+.|.|++|+|. +.+||+|+.|++
T Consensus       217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence             22567889999999999999 888999999999999999995  3443333 69999999999994 577889999999


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      |.+||+|+..+++..+.  +|...|.+|.|+|+           .+.+|++++.|+.+.|||+....
T Consensus       297 V~LwDlRnL~~~lh~~e--~H~dev~~V~WSPh-----------~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  297 VALWDLRNLNKPLHTFE--GHEDEVFQVEWSPH-----------NETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             EEEeechhcccCceecc--CCCcceEEEEeCCC-----------CCceeEecccCCcEEEEeccccc
Confidence            99999999888777776  89999999999996           66777888899999999995433

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.83  E-value=5.4e-20  Score=190.36  Aligned_cols=166  Identities=17%  Similarity=0.238  Sum_probs=146.2

Q ss_pred             EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743           30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (633)
Q Consensus        30 ~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD  109 (633)
                      +.+.+ |...|+||++.|.+. +|++|+.|++|+|||+.+++. ..++.+|-..|..+++++-..|+++++.|+.|+.||
T Consensus       145 rVi~g-HlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  145 RVISG-HLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhhh-ccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            34444 778899999999876 999999999999999999985 567899999999999999999999999999999999


Q ss_pred             CCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccC
Q 006743          110 PGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTC  188 (633)
Q Consensus       110 lrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~  188 (633)
                      +...+.++.+ +|-..|+|++.+|.-..|++|+.|.+++|||+|+.. .+.++.  +|..+|..+.+.|.          
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~--GH~~~V~~V~~~~~----------  288 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLS--GHTNPVASVMCQPT----------  288 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEec--CCCCcceeEEeecC----------
Confidence            9999888765 799999999999999999999999999999999984 445555  89999999999883          


Q ss_pred             CCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          189 KAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       189 sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                        +..+++++.|.+|++||++.-..
T Consensus       289 --dpqvit~S~D~tvrlWDl~agkt  311 (460)
T KOG0285|consen  289 --DPQVITGSHDSTVRLWDLRAGKT  311 (460)
T ss_pred             --CCceEEecCCceEEEeeeccCce
Confidence              44567778999999999976554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=1.3e-19  Score=200.92  Aligned_cols=200  Identities=19%  Similarity=0.231  Sum_probs=166.7

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC----ceeE
Q 006743            4 CKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS----PKVS   75 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~----~~v~   75 (633)
                      .+|.+|++|++|.++++|.++++.    ++....+ |...|.+|+++..+..+|++++.|+++++|++...+    +.+.
T Consensus       375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~  453 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL  453 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence            356799999999999999885433    3334444 677788999998888899999999999999996622    1122


Q ss_pred             ----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           76 ----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        76 ----~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                          +...|...|+|++++|+.++|++|+.|++.+||++...+...++ +|...|.|+.|+|..+.+++++.|++|+||.
T Consensus       454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence                34579999999999999999999999999999999988888777 6999999999999999999999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~  219 (633)
                      +.+. .+++.+.  +|...|..+.|-.+            +..|++++.||.||+|++....+..++..
T Consensus       534 is~f-SClkT~e--GH~~aVlra~F~~~------------~~qliS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  534 ISTF-SCLKTFE--GHTSAVLRASFIRN------------GKQLISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             eccc-eeeeeec--CccceeEeeeeeeC------------CcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence            9988 4566666  89999999999875            44556667899999999987776655543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.1e-19  Score=190.69  Aligned_cols=194  Identities=19%  Similarity=0.294  Sum_probs=155.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+||+++|++|+.|..+.+||+.+|.....+...++..+.+++|.|||. .+++|+.|+.|..||+.+..  ...+.+.
T Consensus       276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~--~~~W~gv  352 (519)
T KOG0293|consen  276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI--LGNWEGV  352 (519)
T ss_pred             EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch--hhccccc
Confidence            59999999999999999999999999999888866677888899999998 69999999999999998776  3334433


Q ss_pred             -CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeE---------------------------------
Q 006743           81 -SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS---------------------------------  126 (633)
Q Consensus        81 -~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~It---------------------------------  126 (633)
                       ...|.+++..+||+++++.+.|..|++|+..+......+....+|+                                 
T Consensus       353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k  432 (519)
T KOG0293|consen  353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK  432 (519)
T ss_pred             ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence             3579999999999999999999888888875433322222222222                                 


Q ss_pred             -----------EEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 006743          127 -----------SLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETAL  194 (633)
Q Consensus       127 -----------sLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lL  194 (633)
                                 .-||-- +..+|++|++|+.|+||+.+++ +++.++.  +|...|.|++|+|.           +...+
T Consensus       433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~Ls--GHs~~vNcVswNP~-----------~p~m~  498 (519)
T KOG0293|consen  433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLS--GHSKTVNCVSWNPA-----------DPEMF  498 (519)
T ss_pred             hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeec--CCcceeeEEecCCC-----------CHHHh
Confidence                       233333 3467889999999999999887 6777777  99999999999996           55567


Q ss_pred             EEeeCCCeEEccCCCCC
Q 006743          195 LGGAVGDSILMPDPLPS  211 (633)
Q Consensus       195 lSgs~Dg~IkIWDlr~~  211 (633)
                      ++++.|++|+||-+.+.
T Consensus       499 ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  499 ASASDDGTIRIWGPSDN  515 (519)
T ss_pred             hccCCCCeEEEecCCcc
Confidence            77889999999977544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=175.50  Aligned_cols=195  Identities=16%  Similarity=0.283  Sum_probs=156.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC--ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tg--k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~   76 (633)
                      ||+|.|++|++|+-|.++.||.-.++  +++..+.+ |...|.|++|+++|+ +||+++.|+.|-||.+....  .....
T Consensus        68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aV  145 (312)
T KOG0645|consen   68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAV  145 (312)
T ss_pred             eecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEee
Confidence            69999999999999999999987654  46777887 667789999999998 99999999999999997443  23667


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---gk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      +..|...|..+.|+|...+|++++.|++|++|+-..   ..++..+ .|...|.+++|++.|..|++++.|++|+||-..
T Consensus       146 L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  146 LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            899999999999999999999999999999998762   3566666 588899999999999999999999999999844


Q ss_pred             CCC-----Cc-------------------eEEEe----------------ecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743          153 GKP-----QP-------------------LTVLR----------------ACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (633)
Q Consensus       153 s~~-----k~-------------------v~~l~----------------~~~H~~~VtsLafsPdg~~Las~s~~sd~~  192 (633)
                      ..-     ..                   +.+++                ...|...|.+++|.|.           ...
T Consensus       226 ~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-----------~~~  294 (312)
T KOG0645|consen  226 TDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-----------VSN  294 (312)
T ss_pred             cCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-----------CCC
Confidence            210     00                   01110                1135556677777662           355


Q ss_pred             EEEEeeCCCeEEccCC
Q 006743          193 ALLGGAVGDSILMPDP  208 (633)
Q Consensus       193 lLlSgs~Dg~IkIWDl  208 (633)
                      +|++++.||.|++|.+
T Consensus       295 ~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  295 RLASGGDDGIVNFWEL  310 (312)
T ss_pred             ceeecCCCceEEEEEe
Confidence            6777888999999975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.82  E-value=9.5e-19  Score=188.20  Aligned_cols=194  Identities=15%  Similarity=0.240  Sum_probs=156.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCcee----------------------------------------------EEEeCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKA----------------------------------------------AELKDP   35 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v----------------------------------------------~~~~~~   35 (633)
                      |+|.|.|+|+|...|+|+|||....+.+                                              .++. .
T Consensus        67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~-G  145 (603)
T KOG0318|consen   67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT-G  145 (603)
T ss_pred             eCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee-c
Confidence            7999999999999999999997432211                                              1122 2


Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (633)
Q Consensus        36 ~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~  115 (633)
                      |...|.+++|-|.-...+++|++|++|.+|+-.--+. ...++.|..-|+|++|+|||.+|++++.||+|.+||-.+++.
T Consensus       146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF-k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~  224 (603)
T KOG0318|consen  146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF-KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK  224 (603)
T ss_pred             cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee-eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence            4455666677666666789999999999998766553 466788999999999999999999999999999999999999


Q ss_pred             eeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE------------------------------
Q 006743          116 SSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL------------------------------  161 (633)
Q Consensus       116 v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l------------------------------  161 (633)
                      +..+    +|.+.|.++.|+||+..+++++.|.+++|||+.+.+ +++.+                              
T Consensus       225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in  303 (603)
T KOG0318|consen  225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN  303 (603)
T ss_pred             EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc-eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence            8887    499999999999999999999999999999998652 21111                              


Q ss_pred             -----------eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          162 -----------RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       162 -----------~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                                 ...+|...|+++..+++            +.++++++.||.|.-||...
T Consensus       304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d------------~~~i~SgsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  304 YLNPSDPSVLKVISGHNKSITALTVSPD------------GKTIYSGSYDGHINSWDSGS  351 (603)
T ss_pred             EecccCCChhheecccccceeEEEEcCC------------CCEEEeeccCceEEEEecCC
Confidence                       12368888888888874            45667778899999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.9e-19  Score=193.93  Aligned_cols=202  Identities=14%  Similarity=0.171  Sum_probs=178.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |+|..-+++++-.+|.|.|||.++...++.+.. ...+|++.+|-...+ .+++|++|..|+||+..+.+ +++.+..|.
T Consensus        21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~e-kV~~FeAH~   97 (794)
T KOG0276|consen   21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGE-KVKTFEAHS   97 (794)
T ss_pred             cCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccc-eEEEecCCceEEEEecccce-eeEEeeccc
Confidence            688888999999999999999999999998875 566788888988766 89999999999999999988 488999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ..|+|++.+|...+++++++|-+|++||-+.+ .+.+++ +|...|.+++|+| |.+.+++++-|++|+||.+... .+.
T Consensus        98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n  176 (794)
T KOG0276|consen   98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN  176 (794)
T ss_pred             cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence            99999999999999999999999999999864 566666 7999999999999 7789999999999999999876 455


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~  219 (633)
                      .++.  +|...|.|++|-+          .++..+|++|+.|..+||||.....+..++..
T Consensus       177 fTl~--gHekGVN~Vdyy~----------~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG  225 (794)
T KOG0276|consen  177 FTLE--GHEKGVNCVDYYT----------GGDKPYLISGADDLTIKVWDYQTKSCVQTLEG  225 (794)
T ss_pred             eeee--ccccCcceEEecc----------CCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence            6666  9999999999987          44788999999999999999987666555443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=2.9e-19  Score=186.10  Aligned_cols=191  Identities=19%  Similarity=0.267  Sum_probs=155.1

Q ss_pred             CCEEEEEECCCcEEEEECCC----------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 006743            6 DEHLASISLSGDLILHNLAS----------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~t----------------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t   69 (633)
                      .-+.++-+..|.|+|||+..                .+.+.++.+| +..-..|+|+|-....|++|..-+.|++|...+
T Consensus       165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh-k~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH-KGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc-CccceeeecccccccccccCccccceEeeeecc
Confidence            34566778899999999842                2355666664 455577999995444589999999999999977


Q ss_pred             CCcee--EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---ceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743           70 RSPKV--SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR---RPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        70 ~~~~v--~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg---k~v~~i~h~~~ItsLafSPdG~~LatGs~D  143 (633)
                      +...+  .-+.+|+..|..++|+| ....|++|+.||+|+|||+|.+   .++....|.+.|+.+.|+.+..+||+|+.|
T Consensus       244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd  323 (440)
T KOG0302|consen  244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD  323 (440)
T ss_pred             CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence            65332  33567999999999999 7789999999999999999988   445555799999999999988899999999


Q ss_pred             CeEEEEECCCC--CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          144 GRVVFYDIRGK--PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       144 GsV~IWDlrs~--~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      |+++|||+|+.  .+|+..++  .|..+|++|.|+|.           +...++.++.|.+|.+||+..
T Consensus       324 Gt~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~-----------e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  324 GTLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPH-----------EDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             ceEEEEEhhhccCCCcceeEE--eccCCeeEEEeccc-----------cCceEEeccCCCcEEEEEeec
Confidence            99999999973  36777777  79999999999995           455566667799999999954

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.82  E-value=2.3e-19  Score=192.40  Aligned_cols=201  Identities=14%  Similarity=0.161  Sum_probs=155.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~---   73 (633)
                      ++.|.|-+|++|+.|..|++||++...    .-+.+.......|+.+.|++.+. .|++.+..-..+|+|-.+....   
T Consensus       174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~  252 (641)
T KOG0772|consen  174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRDGFEIVEFS  252 (641)
T ss_pred             eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccCCceeeeee
Confidence            467899999999999999999997533    33444444567899999999998 4555666688999998765522   


Q ss_pred             --------eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeEee------CCCCeEEEEEecCCCEE
Q 006743           74 --------VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCIT------YEAPFSSLAFIDDDWIL  137 (633)
Q Consensus        74 --------v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~i~------h~~~ItsLafSPdG~~L  137 (633)
                              ....++|...++|.+|+| +...|++++.||+++|||+..-+ ...++.      ..-.++.++|++||+.|
T Consensus       253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i  332 (641)
T KOG0772|consen  253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI  332 (641)
T ss_pred             ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence                    123468999999999999 77789999999999999997643 333332      34568999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      |+|+.||.|.+||.++...........+|..  .|+||.|+++|++|++            -+.|+.+++||+|.+..+
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS------------Rg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS------------RGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh------------ccCCCceeeeeccccccc
Confidence            9999999999999876432222222236766  8999999996666554            467999999999977653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=3e-19  Score=200.48  Aligned_cols=197  Identities=16%  Similarity=0.203  Sum_probs=172.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|..-+++++-..|.|.+||.+-+.++..|.. |.++|+.|+|+|.+. +|++|++|-.|+||+....++ +.++.+|
T Consensus        16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrc-lftL~GH   92 (1202)
T KOG0292|consen   16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRC-LFTLLGH   92 (1202)
T ss_pred             ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCC-eEEecCCccEEEEEeccccee-hhhhccc
Confidence            5899999999999999999999999999999986 788899999999998 999999999999999998886 5778999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC----
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP----  155 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~----  155 (633)
                      -..|..+.|++.-.+|+++++|.+|+||+..+++++.++ +|...|.|.+|+|....|++++-|.+|+|||+....    
T Consensus        93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~  172 (1202)
T KOG0292|consen   93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK  172 (1202)
T ss_pred             cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence            999999999999999999999999999999999999888 699999999999999999999999999999986411    


Q ss_pred             Cc----------------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          156 QP----------------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       156 k~----------------------v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .+                      +......+|...|.-++|+|.            -.++++|+.|+.||+|.....+
T Consensus       173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT------------lpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT------------LPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC------------cceEEecCCcceeeEEEecccc
Confidence            01                      111122389999999999994            4456666889999999876543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=2.2e-19  Score=199.14  Aligned_cols=184  Identities=17%  Similarity=0.251  Sum_probs=160.3

Q ss_pred             CEEEEEECCCcEEEEECCCCcee---EE-----EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            7 EHLASISLSGDLILHNLASGAKA---AE-----LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v---~~-----~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      ..|++++.|++|++|++...+.-   ..     ....|+.-|++|+++|++. +|+||+.|++.+||+++... ....+.
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-l~~vLs  502 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-LLGVLS  502 (775)
T ss_pred             cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce-EEEEee
Confidence            47899999999999999762211   11     1224677799999999987 99999999999999999555 578899


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      +|...|.|+.|+|..+.+++++.|++|+||.+.+..++.++ +|...|..+.|-.+++.|++++.||.|++|++++. .+
T Consensus       503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC  581 (775)
T KOG0319|consen  503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-EC  581 (775)
T ss_pred             CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hh
Confidence            99999999999999999999999999999999999999999 59999999999999999999999999999999998 45


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +..+.  +|...|++++.++.            ...+++++.|+.|.+|.
T Consensus       582 ~~tlD--~H~DrvWaL~~~~~------------~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  582 EMTLD--AHNDRVWALSVSPL------------LDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             hhhhh--hccceeEEEeecCc------------cceeEecCCCeEEEEee
Confidence            56666  89999999998884            44667778899999993

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=7.5e-18  Score=172.65  Aligned_cols=211  Identities=15%  Similarity=0.197  Sum_probs=173.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~--DGtI~IWDl~t~~~~v~~l~   78 (633)
                      .|+.+|.+|++++.|..|+|||..+++.++.+.. ++..+..++|-.... .++.++.  |.+|+.-++.+++. ++.+.
T Consensus        21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dNky-lRYF~   97 (311)
T KOG1446|consen   21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDNKY-LRYFP   97 (311)
T ss_pred             EecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCc-eEEEccCCCCCceEEEEeecCce-EEEcC
Confidence            3889999999999999999999999999999875 455677788877665 4555554  88999999998884 78899


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCc
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP  157 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-~k~  157 (633)
                      +|...|+.++.+|-+..|++++.|++|++||+|..++...+.... -..++|+|.|-++|++.....|++||+|.. +.|
T Consensus        98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP  176 (311)
T KOG1446|consen   98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP  176 (311)
T ss_pred             CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence            999999999999988999999999999999999888877764333 334789999999999999889999999985 456


Q ss_pred             eEEEeec-CCCCCeeEEEEccCCCeEEEe---------------------------------ccCCCCeEEEEeeCCCeE
Q 006743          158 LTVLRAC-SSSEAVSSLCWQRAKPVFIDE---------------------------------TTCKAETALLGGAVGDSI  203 (633)
Q Consensus       158 v~~l~~~-~H~~~VtsLafsPdg~~Las~---------------------------------s~~sd~~lLlSgs~Dg~I  203 (633)
                      ...+... +-....+.+.|+|+|++|+.+                                 ....++.++++++.||.|
T Consensus       177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI  256 (311)
T ss_pred             ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence            6666543 445678999999999998732                                 134678899999999999


Q ss_pred             EccCCCCCCCCC
Q 006743          204 LMPDPLPSVTTS  215 (633)
Q Consensus       204 kIWDlr~~~~~s  215 (633)
                      .+|++.......
T Consensus       257 ~vw~~~tg~~v~  268 (311)
T KOG1446|consen  257 HVWNLETGKKVA  268 (311)
T ss_pred             EEEEcCCCcEee
Confidence            999996544433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.3e-18  Score=182.77  Aligned_cols=213  Identities=13%  Similarity=0.171  Sum_probs=166.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      .|+++|+|||+++.|.+..||++....   ...++.+ |...|.-+.|+||++ +|++|+.|..+.+||+.++......-
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~  308 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYP  308 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCC-eEEecCchHheeeccCCcchhhhhcc
Confidence            389999999999999999999986443   3556666 445566699999998 88999999999999999988543333


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      .+|...+.+++|.|||..|++|+.|+.|..||+.....-..-+ ....|.+++..+||+++++.+.|..|++|+......
T Consensus       309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d  388 (519)
T KOG0293|consen  309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD  388 (519)
T ss_pred             cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence            4456889999999999999999999999999997544322222 335699999999999999999999999999887532


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEE---------------------------------EeccCCCCeEEEEeeCCCeE
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFI---------------------------------DETTCKAETALLGGAVGDSI  203 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~La---------------------------------s~s~~sd~~lLlSgs~Dg~I  203 (633)
                      . ..+   ....+|++++.+.++++++                                 +|-...+..++++|+.|++|
T Consensus       389 r-~li---se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv  464 (519)
T KOG0293|consen  389 R-GLI---SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV  464 (519)
T ss_pred             h-ccc---cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence            1 122   2456788888888887765                                 23234466789999999999


Q ss_pred             EccCCCCCCCCCcccc
Q 006743          204 LMPDPLPSVTTSSVSL  219 (633)
Q Consensus       204 kIWDlr~~~~~ss~s~  219 (633)
                      +||+.+.-.+...++.
T Consensus       465 yIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  465 YIWHRISGKLLAVLSG  480 (519)
T ss_pred             EEEEccCCceeEeecC
Confidence            9999877666555443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.4e-18  Score=183.22  Aligned_cols=197  Identities=17%  Similarity=0.244  Sum_probs=165.6

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC-------C-CCcee
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-------G-RSPKV   74 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~-------t-~~~~v   74 (633)
                      +|+|.+|+.|+..|.|++|.+.+|..+..+.. |-..|+|+.|+-|+. +|++|+.||.|.+|++.       + ...+.
T Consensus        90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~  167 (476)
T KOG0646|consen   90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPL  167 (476)
T ss_pred             CCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccce
Confidence            67888998888999999999999999988864 778899999999998 89999999999999872       1 22346


Q ss_pred             EEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           75 SWLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      +.+..|.-+|+++...+.  ..++++++.|.++|+||+..+..+..+.....+.+++.+|-++.+++|+.+|.|.+.++.
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence            788999999999998763  468999999999999999999999999999999999999999999999999999998876


Q ss_pred             CCC-------------CceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          153 GKP-------------QPLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       153 s~~-------------k~v~~l~~~~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +..             .-.......+|.+  .|+|++++-            |+.+|++|+.||+|+|||+.....
T Consensus       248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------------DgtlLlSGd~dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------------DGTLLLSGDEDGKVCVWDIYSKQC  311 (476)
T ss_pred             cCCcccccccccccccccceeeeeccccCCcceeEEEEec------------CccEEEeeCCCCCEEEEecchHHH
Confidence            532             0111222337777  999999876            677788889999999999854333

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.80  E-value=5.2e-18  Score=176.23  Aligned_cols=189  Identities=17%  Similarity=0.298  Sum_probs=156.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .|+.+|.+||+|+.+|.|.||+..++.....+.....+.+ -++|+|.+. +|++|+.||.|.+|.+.... ..+.+.+|
T Consensus       113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~die-Wl~WHp~a~-illAG~~DGsvWmw~ip~~~-~~kv~~Gh  189 (399)
T KOG0296|consen  113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIE-WLKWHPRAH-ILLAGSTDGSVWMWQIPSQA-LCKVMSGH  189 (399)
T ss_pred             EEccCceEEEecCCCccEEEEEcccCceEEEeecccCceE-EEEeccccc-EEEeecCCCcEEEEECCCcc-eeeEecCC
Confidence            4899999999999999999999999998888864344444 489999887 99999999999999998854 46788999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-----------------------------------------
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----------------------------------------  119 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-----------------------------------------  119 (633)
                      +.++++=+|.|+|++++++..||+|++||+++++++..+                                         
T Consensus       190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence            999999999999999999999999999998665443221                                         


Q ss_pred             -------------------------------------------------------eCCCCeEEEEEecCCCEEEEEEcCC
Q 006743          120 -------------------------------------------------------TYEAPFSSLAFIDDDWILTAGTSNG  144 (633)
Q Consensus       120 -------------------------------------------------------~h~~~ItsLafSPdG~~LatGs~DG  144 (633)
                                                                             .|+..|..+.|.+ ..+|++++.||
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence                                                                   1334455667766 57899999999


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .|+.||.|++ +....+.  +|...|.+++++|+.            .++++++.|++.+||++
T Consensus       349 ~v~~wDaRtG-~l~~~y~--GH~~~Il~f~ls~~~------------~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  349 KVRQWDARTG-QLKFTYT--GHQMGILDFALSPQK------------RLVVTVSDDNTALVFEV  397 (399)
T ss_pred             eEEeeecccc-ceEEEEe--cCchheeEEEEcCCC------------cEEEEecCCCeEEEEec
Confidence            9999999998 4555555  999999999999954            45566677888888876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.80  E-value=4.5e-19  Score=180.80  Aligned_cols=201  Identities=13%  Similarity=0.205  Sum_probs=160.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC------------C------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS------------G------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL   62 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t------------g------k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI   62 (633)
                      +|++||.++|+|+.|-.|+|+|++.            +      -.++++-. |.+.|+++.|+|... +|++|+.|++|
T Consensus       119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~-ILiS~srD~tv  196 (430)
T KOG0640|consen  119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRET-ILISGSRDNTV  196 (430)
T ss_pred             eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhh-eEEeccCCCeE
Confidence            6999999999999999999999862            1      13445544 667789999999987 99999999999


Q ss_pred             EEEECCCCCce-eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecCCCEE
Q 006743           63 HLWDTTGRSPK-VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWIL  137 (633)
Q Consensus        63 ~IWDl~t~~~~-v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG~~L  137 (633)
                      +++|......+ .........+|.++.|+|.|.+|+.|.+-.++++||+.+-++....    .|.+.|+++.+++.|++.
T Consensus       197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY  276 (430)
T ss_pred             EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence            99999654422 1223345578999999999999999999999999999998876544    488999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~-~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss  216 (633)
                      ++|+.||.|+|||--.. +++..+.. .|. ..|++..|..+++|            +++.+.|..+++|++....+...
T Consensus       277 vTaSkDG~IklwDGVS~-rCv~t~~~-AH~gsevcSa~Ftkn~ky------------iLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSN-RCVRTIGN-AHGGSEVCSAVFTKNGKY------------ILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             EEeccCCcEEeeccccH-HHHHHHHh-hcCCceeeeEEEccCCeE------------EeecCCcceeeeeeecCCceEEE
Confidence            99999999999998776 34444443 454 56889999886555            45557899999999865555444


Q ss_pred             c
Q 006743          217 V  217 (633)
Q Consensus       217 ~  217 (633)
                      +
T Consensus       343 Y  343 (430)
T KOG0640|consen  343 Y  343 (430)
T ss_pred             E
Confidence            3

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.80  E-value=1.3e-18  Score=177.05  Aligned_cols=194  Identities=16%  Similarity=0.260  Sum_probs=161.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |.+|+..|++++.|.+|+.||+++|+.++++++ |...|+.++-+.-|..++.+|+.||+++|||++...+ ++ .....
T Consensus        98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~-t~~~k  174 (338)
T KOG0265|consen   98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IK-TFENK  174 (338)
T ss_pred             eccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccch-hh-ccccc
Confidence            788999999999999999999999999999997 6778888886767777899999999999999998774 33 34456


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---CCc
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQP  157 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~---~k~  157 (633)
                      .+++++.|..++..+++|+-|+.|++||++.+....++ +|.+.|+.+..+++|.++.+-+-|.+|++||++-.   ..+
T Consensus       175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence            78999999999999999999999999999998888877 79999999999999999999999999999999853   234


Q ss_pred             eEEEeecCCCCC--eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          158 LTVLRACSSSEA--VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       158 v~~l~~~~H~~~--VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +.++....|.-.  ....+|+|            ++..+-.++.|+.+++||...
T Consensus       255 v~if~g~~hnfeknlL~cswsp------------~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  255 VKIFQGHIHNFEKNLLKCSWSP------------NGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             EEEeecchhhhhhhcceeeccC------------CCCccccccccceEEEeeccc
Confidence            555554434322  33455555            555555567899999998743

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.80  E-value=1.2e-19  Score=180.70  Aligned_cols=193  Identities=16%  Similarity=0.228  Sum_probs=154.9

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~   83 (633)
                      .|..+.|+++.|-+-+|||.-+|..+..|.  |+..|..++|+.|.. +|++|+.++.++|||+...+.....+.+|.+.
T Consensus        69 ~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~  145 (334)
T KOG0278|consen   69 KNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG  145 (334)
T ss_pred             chhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence            344456788889999999999999999987  788999999999886 89999999999999998887777788999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEE---------------------------------
Q 006743           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAF---------------------------------  130 (633)
Q Consensus        84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLaf---------------------------------  130 (633)
                      |..+.|....+.|++..+|++||+||.+++..++.+....+|+++.+                                 
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~  225 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC  225 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence            99999999888999999999999999999988777655555554444                                 


Q ss_pred             -------ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeE
Q 006743          131 -------IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI  203 (633)
Q Consensus       131 -------SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~I  203 (633)
                             +|+..++++|++|..++.||..++..... + ..+|.++|.|+.|+|+            +.++.+|+.||+|
T Consensus       226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~-nkgh~gpVhcVrFSPd------------GE~yAsGSEDGTi  291 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-Y-NKGHFGPVHCVRFSPD------------GELYASGSEDGTI  291 (334)
T ss_pred             ccccccccCCCceEEecCcceEEEEEeccCCceeee-c-ccCCCCceEEEEECCC------------CceeeccCCCceE
Confidence                   44445556666677777777776643222 1 2489999999999994            5566677889999


Q ss_pred             EccCCCCCCC
Q 006743          204 LMPDPLPSVT  213 (633)
Q Consensus       204 kIWDlr~~~~  213 (633)
                      ++|...+-.+
T Consensus       292 rlWQt~~~~~  301 (334)
T KOG0278|consen  292 RLWQTTPGKT  301 (334)
T ss_pred             EEEEecCCCc
Confidence            9998765444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.79  E-value=5.2e-18  Score=170.46  Aligned_cols=201  Identities=17%  Similarity=0.224  Sum_probs=170.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      ||.+|.+|.+|++|..+.||-..+|+++.++.+ |...|.|++.+.+.+ .+++|+.|.++++||+.+++.+ ..+ ...
T Consensus        18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~-~liTGSAD~t~kLWDv~tGk~l-a~~-k~~   93 (327)
T KOG0643|consen   18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSK-HLITGSADQTAKLWDVETGKQL-ATW-KTN   93 (327)
T ss_pred             ecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcc-eeeeccccceeEEEEcCCCcEE-EEe-ecC
Confidence            789999999999999999999889999999997 667788899988877 7999999999999999999853 333 456


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCC-------CceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           82 APTAGISFSSDDKIIASVGLD-----KKLYTYDPGS-------RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrt-------gk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      .+|..+.|+++|++++.+.++     +.|.++|++.       ..+...+ .+...++.+-|.|-+++|++|++||.|.+
T Consensus        94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~  173 (327)
T KOG0643|consen   94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI  173 (327)
T ss_pred             CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEE
Confidence            789999999999988887654     5799999983       3444444 57889999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCccccc
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLS  220 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s  220 (633)
                      ||++++.+.+....  .|...|+.+++++            +..++++++.|.+-++||++.......+...
T Consensus       174 ~da~~g~~~v~s~~--~h~~~Ind~q~s~------------d~T~FiT~s~Dttakl~D~~tl~v~Kty~te  231 (327)
T KOG0643|consen  174 YDARTGKELVDSDE--EHSSKINDLQFSR------------DRTYFITGSKDTTAKLVDVRTLEVLKTYTTE  231 (327)
T ss_pred             EEcccCceeeechh--hhccccccccccC------------CcceEEecccCccceeeeccceeeEEEeeec
Confidence            99999866555544  6888999999998            6677888899999999999977766665554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.79  E-value=2e-19  Score=185.40  Aligned_cols=183  Identities=16%  Similarity=0.267  Sum_probs=155.7

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~   83 (633)
                      .|++.+++|..|++|+|||.++..+...+.+ |.+.|-|+.|..  + +|++|+.|.+|+|||+.++++ +.++..|...
T Consensus       205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqyd~--r-viisGSSDsTvrvWDv~tge~-l~tlihHcea  279 (499)
T KOG0281|consen  205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNTGEP-LNTLIHHCEA  279 (499)
T ss_pred             ecchhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeeccc--e-EEEecCCCceEEEEeccCCch-hhHHhhhcce
Confidence            4677889999999999999999888888887 556677788763  3 899999999999999999985 6788899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE----eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC----ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~----i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      |..+.|+  ..++++++.|.++.+||+.....+..    .+|...|+.+.|+  .++|++++.|.+|++|++.+. ..++
T Consensus       280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~-efvR  354 (499)
T KOG0281|consen  280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVR  354 (499)
T ss_pred             eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce-eeeh
Confidence            9999998  67999999999999999987654322    2799999999996  569999999999999999988 4455


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ++.  +|...|.|+.+              .+.++++|+.|.+|++||+..-+
T Consensus       355 tl~--gHkRGIAClQY--------------r~rlvVSGSSDntIRlwdi~~G~  391 (499)
T KOG0281|consen  355 TLN--GHKRGIACLQY--------------RDRLVVSGSSDNTIRLWDIECGA  391 (499)
T ss_pred             hhh--cccccceehhc--------------cCeEEEecCCCceEEEEeccccH
Confidence            555  89999998886              56788888999999999985433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.79  E-value=2.7e-18  Score=181.34  Aligned_cols=196  Identities=18%  Similarity=0.266  Sum_probs=168.8

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt   85 (633)
                      ...+++|+.|..+.++|...++.+..+++ |...|+.+.|+++.. .+++++.|..|+||....... ......|..+|+
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~-~~~~~~h~~~V~  307 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSE-PTSSRPHEEPVT  307 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchh-heeecCCcceEEeeccccccC-ccccccccccce
Confidence            36788999999999999999999999997 566678899999988 789999999999999976664 456789999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (633)
Q Consensus        86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~  162 (633)
                      .+..+|.|.||++++.|++..+.|++++..+....++   -.+++.+|+|||.++.+|..||.|+|||+.+..   ..-+
T Consensus       308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~  384 (506)
T KOG0289|consen  308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAK  384 (506)
T ss_pred             eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc---cccc
Confidence            9999999999999999999999999999988777654   458999999999999999999999999999874   3344


Q ss_pred             ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743          163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (633)
Q Consensus       163 ~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~  219 (633)
                      +.+|.++|+.|+|+.+|            .+|++++.|+.|++||+|.......+..
T Consensus       385 Fpght~~vk~i~FsENG------------Y~Lat~add~~V~lwDLRKl~n~kt~~l  429 (506)
T KOG0289|consen  385 FPGHTGPVKAISFSENG------------YWLATAADDGSVKLWDLRKLKNFKTIQL  429 (506)
T ss_pred             CCCCCCceeEEEeccCc------------eEEEEEecCCeEEEEEehhhcccceeec
Confidence            55899999999999854            4555667799999999998776555444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=6.8e-18  Score=172.43  Aligned_cols=239  Identities=15%  Similarity=0.174  Sum_probs=176.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |++.+..|+++++||.+++||+.......+++  +..++.+++|.++.  .+++|+-||.|+++|+.++.  ...+..|.
T Consensus        21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~--~~~igth~   94 (323)
T KOG1036|consen   21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGN--EDQIGTHD   94 (323)
T ss_pred             EcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCCc--eEEEeccCceEEEEEecCCc--ceeeccCC
Confidence            67788889999999999999998887766776  67788888998754  59999999999999999887  56788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l  161 (633)
                      .+|.||.+++....+++|+.|++|++||.|....+..+.....|.++...  ++.|++|+.|..|.+||+|+...+... 
T Consensus        95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~-  171 (323)
T KOG1036|consen   95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR-  171 (323)
T ss_pred             CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh-
Confidence            99999999998889999999999999999987777677667789988876  789999999999999999987654421 


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEec-------------------------------------------cCCCCeEEEEee
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDET-------------------------------------------TCKAETALLGGA  198 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s-------------------------------------------~~sd~~lLlSgs  198 (633)
                      +...-.-.+.||++-|++.-.++++                                           ...-...+++|+
T Consensus       172 reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG  251 (323)
T KOG1036|consen  172 RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG  251 (323)
T ss_pred             ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence            1112233455555555332222110                                           111233588889


Q ss_pred             CCCeEEccCCCCCCCCCcccccccccCCCCCCccCCCCCCCccccCCCCCCCCc
Q 006743          199 VGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQ  252 (633)
Q Consensus       199 ~Dg~IkIWDlr~~~~~ss~s~s~a~sss~sslt~~ssG~~ssi~~~st~e~tP~  252 (633)
                      .||.|.+||+.+.+....+.   ..+.+-++++....|...++....+.+..+.
T Consensus       252 sDG~V~~Wd~~~rKrl~q~~---~~~~SI~slsfs~dG~~LAia~sy~ye~~~~  302 (323)
T KOG1036|consen  252 SDGIVNIWDLFNRKRLKQLA---KYETSISSLSFSMDGSLLAIASSYQYERADT  302 (323)
T ss_pred             CCceEEEccCcchhhhhhcc---CCCCceEEEEeccCCCeEEEEechhhhcCCC
Confidence            99999999997655433322   1222344555666676666666555555544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.79  E-value=7.9e-19  Score=188.33  Aligned_cols=210  Identities=20%  Similarity=0.338  Sum_probs=164.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEE-e-----------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAEL-K-----------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~-~-----------~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~   68 (633)
                      .|++.|+.|++.+....++|+|- +|..+.++ +           .+|-..++|.+|+|+....|++++.||+++|||+.
T Consensus       221 ~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~  299 (641)
T KOG0772|consen  221 QYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN  299 (641)
T ss_pred             eecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence            48899999999988999999995 55443332 2           14667789999999998899999999999999997


Q ss_pred             CCCceeEEec-----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeEe--eCCC--CeEEEEEecCCCEE
Q 006743           69 GRSPKVSWLK-----QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCI--TYEA--PFSSLAFIDDDWIL  137 (633)
Q Consensus        69 t~~~~v~~l~-----~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v~~i--~h~~--~ItsLafSPdG~~L  137 (633)
                      ..+.....++     +..-.++.++|++++++||.|+.||.|.+||.+..  ++...+  +|..  .|+||.|++||++|
T Consensus       300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L  379 (641)
T KOG0772|consen  300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL  379 (641)
T ss_pred             CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence            6654433333     23357899999999999999999999999998653  233333  4655  89999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      ++-+.|+++++||+++.++++.+.......-+-+.++|+|+.+.|+++...      .-+...+.+.+||...+......
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~------~~~~~~g~L~f~d~~t~d~v~ki  453 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSA------PNGMTAGTLFFFDRMTLDTVYKI  453 (641)
T ss_pred             hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccc------cCCCCCceEEEEeccceeeEEEe
Confidence            999999999999999998888887766666778899999988888876332      22233567888888776655443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.78  E-value=6.3e-18  Score=172.20  Aligned_cols=193  Identities=18%  Similarity=0.254  Sum_probs=144.6

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+| ....++.++.||+|++|+++. |..+.+....+..+|.+++|+.+|. .+++|+.|+.+++||+.+++  +..+.
T Consensus        34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S~Q--~~~v~  110 (347)
T KOG0647|consen   34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLASGQ--VSQVA  110 (347)
T ss_pred             EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccCCC--eeeee
Confidence            5889 455666899999999999986 5655555555788899999999997 89999999999999999987  67788


Q ss_pred             cCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeeEeeCCC---------------------------------
Q 006743           79 QHSAPTAGISFSSDDK--IIASVGLDKKLYTYDPGSRRPSSCITYEA---------------------------------  123 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~--~LaSgS~DGtVrIWDlrtgk~v~~i~h~~---------------------------------  123 (633)
                      .|.++|.++.|-+...  .|++|+.|++|++||+|...++..+....                                 
T Consensus       111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~  190 (347)
T KOG0647|consen  111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEF  190 (347)
T ss_pred             ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchh
Confidence            9999999999987444  89999999999999999766554433222                                 


Q ss_pred             ---------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCC-CceEEEeecCCC---------CCeeEEEEccCCCeEEE
Q 006743          124 ---------PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP-QPLTVLRACSSS---------EAVSSLCWQRAKPVFID  184 (633)
Q Consensus       124 ---------~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~-k~v~~l~~~~H~---------~~VtsLafsPdg~~Las  184 (633)
                               .++|++...|....+.|+-+|+|-|..+.... +.-..++  .|.         -.|.+|+|+|.      
T Consensus       191 k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk--CHR~~~~~~~~VYaVNsi~FhP~------  262 (347)
T KOG0647|consen  191 KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK--CHRSTNSVNDDVYAVNSIAFHPV------  262 (347)
T ss_pred             hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE--EeccCCCCCCceEEecceEeecc------
Confidence                     25566666666666777777777777666531 1112222  232         24677889884      


Q ss_pred             eccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          185 ETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       185 ~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                            ...|++.+.||++.+||-..
T Consensus       263 ------hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  263 ------HGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             ------cceEEEecCCceEEEecchh
Confidence                  34556667799999998754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.78  E-value=1e-17  Score=188.65  Aligned_cols=192  Identities=19%  Similarity=0.221  Sum_probs=167.4

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~-~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      +.++++++.|+.|.+||..++..+.. +.+ |.+.|.++++..-+ .++++|+.|.+++|||+.++.+ .+.+.+|...|
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C-~~~l~gh~stv  294 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGEC-THSLQGHTSSV  294 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcE-EEEecCCCceE
Confidence            56888999999999999999998887 776 67778889998744 4899999999999999998886 68889999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~  163 (633)
                      .++...  ..++++|+.|.+|++||+.++..+.++. |.++|.++..+  +.++++|+.||+|.+||+.+. ++++.+. 
T Consensus       295 ~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~-  368 (537)
T KOG0274|consen  295 RCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLS-  368 (537)
T ss_pred             EEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeec-
Confidence            999875  6778899999999999999999999996 99999999998  889999999999999999976 6677777 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC-CCCCccccc
Q 006743          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS-VTTSSVSLS  220 (633)
Q Consensus       164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~-~~~ss~s~s  220 (633)
                       +|.++|+++.+..            . ..+++|+.|+.|++||++.. .+...+...
T Consensus       369 -gH~~~V~sl~~~~------------~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h  412 (537)
T KOG0274|consen  369 -GHTGRVYSLIVDS------------E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH  412 (537)
T ss_pred             -CCcceEEEEEecC------------c-ceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence             7999999998754            1 67888899999999999887 665555443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.78  E-value=4.4e-18  Score=191.50  Aligned_cols=191  Identities=19%  Similarity=0.287  Sum_probs=163.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      -+.+|++|+.|.+++|||..+|++...+.+ |...+.++...+.   ++++|+.|.+|++|++.++.. ++.+.+|..+|
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V  334 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPV  334 (537)
T ss_pred             CCCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEEEccCc---eEeeccCCceEEEEeccCcce-EEEeccccccE
Confidence            377999999999999999999999999996 7778888776543   788899999999999998874 67777899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~  163 (633)
                      +++..+  +.++++|+.|++|++||+.+++++..+ +|...|+++.+... .+++.|+.|+.|++||+++..+++..+. 
T Consensus       335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-  410 (537)
T KOG0274|consen  335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-  410 (537)
T ss_pred             EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-
Confidence            999998  889999999999999999999999888 69999999988755 8999999999999999998855556665 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (633)
Q Consensus       164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~  219 (633)
                       +|...+.++.+              ...+|++++.|++|++||.........+..
T Consensus       411 -~h~~~v~~l~~--------------~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  411 -GHTSLVSSLLL--------------RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             -CCccccccccc--------------ccceeEeccccccEEEeecccCceeeeecc
Confidence             78887866654              446788889999999999987766554433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.78  E-value=7.8e-18  Score=175.60  Aligned_cols=188  Identities=20%  Similarity=0.306  Sum_probs=153.9

Q ss_pred             cCCCCEEEEEECCCcEEEEECCC-------------------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEe
Q 006743            3 NCKDEHLASISLSGDLILHNLAS-------------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG   57 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~t-------------------------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs   57 (633)
                      .++|.++++|+.|..|.||+.+.                         +.++..+. .|.+.|.+|.|++.+  .+++++
T Consensus       202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~d~~--v~yS~S  278 (423)
T KOG0313|consen  202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVWSDAT--VIYSVS  278 (423)
T ss_pred             cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEEcCCC--ceEeec
Confidence            46899999999999999999321                         11233444 488899999999843  699999


Q ss_pred             CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ee--eEeeCCCCeEEEEEecC
Q 006743           58 DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PS--SCITYEAPFSSLAFIDD  133 (633)
Q Consensus        58 ~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk--~v--~~i~h~~~ItsLafSPd  133 (633)
                      .|.+|++||+.++... ..+ .....++|+..+|..++|++|+.|..|++||.|++.  .+  ..++|.+.|.++.|+|.
T Consensus       279 wDHTIk~WDletg~~~-~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~  356 (423)
T KOG0313|consen  279 WDHTIKVWDLETGGLK-STL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT  356 (423)
T ss_pred             ccceEEEEEeecccce-eee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence            9999999999988853 333 345779999999999999999999999999999753  22  23479999999999996


Q ss_pred             C-CEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          134 D-WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       134 G-~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      + .+|++|+.|+++++||+|....++..+.  +|...|.++.|.             ++.++++|+.|++|+|+.-.+
T Consensus       357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~-------------~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWN-------------EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             CceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEecc-------------CCceEEeccCcceEEEecccc
Confidence            5 5677899999999999999876776666  899999999986             456788889999999986544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.6e-18  Score=192.95  Aligned_cols=190  Identities=19%  Similarity=0.287  Sum_probs=163.9

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG   86 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vts   86 (633)
                      .+|++|+.||.|++||++..+....+.+ ..+.|++|+|+|...++|+++.+.|.+++||++........+..|.++|.|
T Consensus       147 ~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c  225 (839)
T KOG0269|consen  147 NILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC  225 (839)
T ss_pred             cEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence            5889999999999999998888888876 778899999999888899999999999999999877667788999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeEeeCCCCeEEEEEecCCCE-EEEEE--cCCeEEEEECCCCCCceEEE
Q 006743           87 ISFSSDDKIIASVGLDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWI-LTAGT--SNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        87 LafSPdg~~LaSgS~DGtVrIWDlrtgk~--v~~i~h~~~ItsLafSPdG~~-LatGs--~DGsV~IWDlrs~~k~v~~l  161 (633)
                      +.|+|++.+||+|+.|+.|+|||+.+.+.  ..++....++.+|+|-|+..+ |++++  .|-.|+|||++...-|..++
T Consensus       226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~  305 (839)
T KOG0269|consen  226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF  305 (839)
T ss_pred             EeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee
Confidence            99999999999999999999999986543  455667889999999998654 55443  47789999999887787877


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .  .|...++.++|..           .+...+++++.|+.|..--++.
T Consensus       306 ~--eH~~~vt~i~W~~-----------~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  306 L--EHTDSVTGIAWDS-----------GDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             e--ccCccccceeccC-----------CCceeeEeecCccHHHHhhhhc
Confidence            7  7999999999965           3778889999999887765543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1e-17  Score=171.46  Aligned_cols=194  Identities=18%  Similarity=0.209  Sum_probs=155.7

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      ..+|.++|+|+.|-+|+|||+...+.+..+.. |.+.|+++.|.+.-. ..|++|++||.|.+|+..... .+.+++.|.
T Consensus        50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~  127 (362)
T KOG0294|consen   50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHK  127 (362)
T ss_pred             EecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccc
Confidence            45789999999999999999998888888775 678899999987642 248999999999999999886 478999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---------------------------------------
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---------------------------------------  122 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---------------------------------------  122 (633)
                      +.|+.++++|.+++.++.+.|+.++.||+-.|+.-......                                       
T Consensus       128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~  207 (362)
T KOG0294|consen  128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN  207 (362)
T ss_pred             cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc
Confidence            99999999999999999999999999998665533222111                                       


Q ss_pred             -CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743          123 -APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (633)
Q Consensus       123 -~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg  201 (633)
                       ..+.|+.|. ++.+|++|+.|+.|.+||.... .+...+.  +|...|..+.+--          ..++.+|++++.||
T Consensus       208 ~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~--AH~~RVK~i~~~~----------~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  208 PKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFL--AHENRVKDIASYT----------NPEHEYLVTASSDG  273 (362)
T ss_pred             cccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeee--cchhheeeeEEEe----------cCCceEEEEeccCc
Confidence             113333333 4567888899999999999874 4555555  7999999998543          23668889999999


Q ss_pred             eEEccCCCCCC
Q 006743          202 SILMPDPLPSV  212 (633)
Q Consensus       202 ~IkIWDlr~~~  212 (633)
                      .|+|||++...
T Consensus       274 ~I~vWd~~~~~  284 (362)
T KOG0294|consen  274 FIKVWDIDMET  284 (362)
T ss_pred             eEEEEEccccc
Confidence            99999998653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=6.8e-18  Score=178.90  Aligned_cols=195  Identities=16%  Similarity=0.250  Sum_probs=160.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCcee---EEE-----------------eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 006743            5 KDEHLASISLSGDLILHNLASGAKA---AEL-----------------KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL   64 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v---~~~-----------------~~~~~~~VssLafSpdg~~lLaSGs~DGtI~I   64 (633)
                      .|+++|.|+.|..|.|||+.-...+   ..+                 ..+|.+.|-.+.|+..-+++|++|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            3789999999999999998421110   000                 11466777789999999999999999999999


Q ss_pred             EECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEecCC-CEEEEEE
Q 006743           65 WDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDD-WILTAGT  141 (633)
Q Consensus        65 WDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg-k~v~~i~h~~~ItsLafSPdG-~~LatGs  141 (633)
                      ||+.++++ ...+..|...|.+++|+| ...+|++|+.|++|.+.|.|.. ..-..+...+.|-.++|+|.. ..++++.
T Consensus       271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence            99999996 566778999999999999 8899999999999999999953 333455678899999999964 6677888


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       142 ~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .||+|+-+|+|+..+++..++  .|.+.|.+|+++..           ...++.+++.|+.|++|++.-..+
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~--AHd~~ISgl~~n~~-----------~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLK--AHDDEISGLSVNIQ-----------TPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             CCceEEeeecCCCCCceeEEE--eccCCcceEEecCC-----------CCcceeeccccceEEEEeecCCCC
Confidence            999999999999888888888  89999999999875           344567788899999998854443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.8e-17  Score=160.92  Aligned_cols=191  Identities=15%  Similarity=0.204  Sum_probs=149.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC------C--------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS------G--------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t------g--------k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWD   66 (633)
                      +|+|.|.+.++|++..+++|.....      +        ..+++-..||...|.|++|+|+|+ +|++|+.|++|++..
T Consensus        39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~  117 (350)
T KOG0641|consen   39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLP  117 (350)
T ss_pred             EecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEe
Confidence            5999999999999999988875421      1        122333457899999999999998 999999999999886


Q ss_pred             CCCCCce---------------------------------------------------eEEeccCCCCeEEE-EEcCCCC
Q 006743           67 TTGRSPK---------------------------------------------------VSWLKQHSAPTAGI-SFSSDDK   94 (633)
Q Consensus        67 l~t~~~~---------------------------------------------------v~~l~~H~~~VtsL-afSPdg~   94 (633)
                      .....+.                                                   .+.+.+|.+.|.++ .|  ++-
T Consensus       118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~  195 (350)
T KOG0641|consen  118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGA  195 (350)
T ss_pred             cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCc
Confidence            5322111                                                   11234455555444 23  367


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeEee---C-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 006743           95 IIASVGLDKKLYTYDPGSRRPSSCIT---Y-----EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS  166 (633)
Q Consensus        95 ~LaSgS~DGtVrIWDlrtgk~v~~i~---h-----~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H  166 (633)
                      +|++|+.|.+|++||++-..++..+.   |     ...|.+++..|.|+.|++|..|....+||++.+ .++..+.  .|
T Consensus       196 m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~f~--ph  272 (350)
T KOG0641|consen  196 MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQRFH--PH  272 (350)
T ss_pred             EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeeeeC--CC
Confidence            88899999999999999998888773   2     256999999999999999999999999999988 4444444  89


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       167 ~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ...|.|+.|+|            +..++++++.|..|++-|+.
T Consensus       273 sadir~vrfsp------------~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  273 SADIRCVRFSP------------GAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             ccceeEEEeCC------------CceEEEEecccceEEEeecc
Confidence            99999999999            66778888999999999884

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.77  E-value=2.4e-17  Score=171.31  Aligned_cols=196  Identities=14%  Similarity=0.212  Sum_probs=160.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      .+|+.+++++|+.|..-.+|++.++.....+.+ |++.|.++.|+.+|. +|++|+.+|.|+||+..++... ..+..--
T Consensus        72 l~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~~-~~~~~e~  148 (399)
T KOG0296|consen   72 LHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGEQ-WKLDQEV  148 (399)
T ss_pred             eCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCce-EEEecCCCccEEEEEcccCceE-EEeeccc
Confidence            578889999999999999999999998888887 677788899999998 9999999999999999988743 3333455


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..|.-+.|+|.+..|+.|+.||.|.+|.+.++...+.+ +|..++++=.|.|+|+.++++..||+|++||++++ +++..
T Consensus       149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~~  227 (399)
T KOG0296|consen  149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLHK  227 (399)
T ss_pred             CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeEE
Confidence            67888999999999999999999999999986555555 79999999999999999999999999999999998 45555


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik  204 (633)
                      +.. .......++.++..+..++.| . .++...+.+..-++|.
T Consensus       228 ~~~-~e~~~~~~~~~~~~~~~~~~g-~-~e~~~~~~~~~sgKVv  268 (399)
T KOG0296|consen  228 ITQ-AEGLELPCISLNLAGSTLTKG-N-SEGVACGVNNGSGKVV  268 (399)
T ss_pred             ecc-cccCcCCccccccccceeEec-c-CCccEEEEccccceEE
Confidence            543 235667888888888888777 2 2444444443344433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.7e-18  Score=189.88  Aligned_cols=197  Identities=18%  Similarity=0.254  Sum_probs=162.0

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 006743            4 CKDEHLASISLSGDLILHNLASGA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW   76 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~   76 (633)
                      |++++|++||.||.|++|+.....      .+..++ +|.+.|+++....+++ .|++++.|-+|++|+..... ....+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMST  112 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence            567899999999999999985432      244555 5778888888888887 79999999999999996553 33677


Q ss_pred             eccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCce--eeE---------e-eCCCCeEEEEEecCCCEEEEEEcC
Q 006743           77 LKQHSAPTAGISF-SSDDKIIASVGLDKKLYTYDPGSRRP--SSC---------I-TYEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        77 l~~H~~~VtsLaf-SPdg~~LaSgS~DGtVrIWDlrtgk~--v~~---------i-~h~~~ItsLafSPdG~~LatGs~D  143 (633)
                      +..|...|.|+++ .++...+|+|+.|+.|.+||+.++..  +..         . ++...|++++.++.|..|+.|+..
T Consensus       113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte  192 (735)
T KOG0308|consen  113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE  192 (735)
T ss_pred             hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence            8999999999999 67899999999999999999997732  211         1 467889999999999999999999


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       144 GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      +.+++||.+++++..+ ++  +|...|.++-.++            ++..+++++.|++|++||++-..+..++
T Consensus       193 k~lr~wDprt~~kimk-Lr--GHTdNVr~ll~~d------------DGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  193 KDLRLWDPRTCKKIMK-LR--GHTDNVRVLLVND------------DGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             cceEEeccccccceee-ee--ccccceEEEEEcC------------CCCeEeecCCCceEEeeeccccceeeeE
Confidence            9999999999864433 33  8999999999887            5566677788999999999876665554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.77  E-value=2.3e-18  Score=178.62  Aligned_cols=196  Identities=19%  Similarity=0.323  Sum_probs=160.2

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------------
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------------   72 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--------------   72 (633)
                      ..+++|+.||.|+|||+....+...++. |.+.|+.|++.. +  .++++++|++|+.|.+...-.              
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~-~--~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh  155 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ-T--SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDH  155 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc-c--ceEEecCCcceeeeeccCCcceeeecccccccccc
Confidence            4578999999999999999889999986 777899999886 2  589999999999997432110              


Q ss_pred             -----------------------eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEE
Q 006743           73 -----------------------KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSL  128 (633)
Q Consensus        73 -----------------------~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsL  128 (633)
                                             ++..+.-....|.++.|+| ....|++|+.|+.|.+||+|++.++..+...-.-+.+
T Consensus       156 ~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I  235 (433)
T KOG0268|consen  156 HRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI  235 (433)
T ss_pred             ccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence                                   0112222345678889999 7788899999999999999999999888777888899


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec----------------------
Q 006743          129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET----------------------  186 (633)
Q Consensus       129 afSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s----------------------  186 (633)
                      +|+|.+..+++|.+|..++.||++....++.+..  +|...|.+++|+|.|+.+++++                      
T Consensus       236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk  313 (433)
T KOG0268|consen  236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK  313 (433)
T ss_pred             ecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence            9999888899999999999999999888888877  8999999999999988877553                      


Q ss_pred             ---------cCCCCeEEEEeeCCCeEEccCC
Q 006743          187 ---------TCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       187 ---------~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                               ++.|..++++|+.|+.|++|.-
T Consensus       314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             hhheeeEEEEeccccEEEecCCCcceeeeec
Confidence                     3446667777777777777754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=4.6e-17  Score=174.23  Aligned_cols=177  Identities=21%  Similarity=0.279  Sum_probs=147.2

Q ss_pred             ccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |+|+++ .+++|+.|+.+++||+.+......+.+ |.+.|+|.+|+|..++++++|+.||+|++||++.....+. -..|
T Consensus       118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~-elnh  195 (487)
T KOG0310|consen  118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV-ELNH  195 (487)
T ss_pred             ecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE-EecC
Confidence            666655 677888899999999988876556665 7888999999999999999999999999999988753333 4569


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ..+|..+.+-|.|..|++++.. .|++||+-+|. .+... .|...|+|+++..++..|++|+-||.|++||+.+.    
T Consensus       196 g~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----  270 (487)
T KOG0310|consen  196 GCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----  270 (487)
T ss_pred             CCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----
Confidence            9999999999999999999865 69999998654 44444 49999999999999999999999999999997665    


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ++.......++|.+++.+|+++.++.+
T Consensus       271 Kvv~s~~~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  271 KVVHSWKYPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             EEEEeeecccceeeEEecCCCceEEEe
Confidence            445555678999999999976655554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=6.3e-19  Score=194.97  Aligned_cols=192  Identities=19%  Similarity=0.236  Sum_probs=167.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt   85 (633)
                      ++.+++|+.|-.+-+|.+.....+..+.+ |...|.+|.|+.... +|++|..+|+|++||++..+. ++++.+|...+.
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~-vrtLtgh~~~~~  116 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKI-VRTLTGHLLNIT  116 (825)
T ss_pred             ceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchh-hhcccccCCceeeeehhhhhh-hhhhhccccCcc
Confidence            56788899999999999877666777776 778899999999987 899999999999999998774 789999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec
Q 006743           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC  164 (633)
Q Consensus        86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~  164 (633)
                      .+.|+|.+.+++.|+.|+.+++||++...+...+ .|...+.++.|+|+|++++.|++|..|+|||...+ +....+.  
T Consensus       117 sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~--  193 (825)
T KOG0267|consen  117 SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFK--  193 (825)
T ss_pred             eeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc-ccccccc--
Confidence            9999999999999999999999999987777777 58888999999999999999999999999999877 3333334  


Q ss_pred             CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743          165 SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (633)
Q Consensus       165 ~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s  215 (633)
                      .|.+.|.++.|+|            .+.++..|+.|+.+++||+..|....
T Consensus       194 ~~e~~v~sle~hp------------~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  194 SHEGKVQSLEFHP------------LEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             cccccccccccCc------------hhhhhccCCCCceeeeeccceeEEee
Confidence            6999999999999            56677778889999999999666544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=5.5e-17  Score=182.73  Aligned_cols=193  Identities=12%  Similarity=0.164  Sum_probs=156.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |+. .++|++++.|.+|++|++...++++.|.  |.+.|+||+|+|.++++|++|+-||.|+||++...+  +..+..-.
T Consensus       377 WSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~  451 (712)
T KOG0283|consen  377 WSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLR  451 (712)
T ss_pred             ccc-CCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhh
Confidence            555 4588999999999999999999999997  889999999999988899999999999999998877  45556666


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDD-DWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSPd-G~~LatGs~DGsV~IWDl  151 (633)
                      .-|++++|.|||+..++|+.+|.+++|+.+..+.+....         ....|+.+.|.|. ...|++.+.|..|+|||.
T Consensus       452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            899999999999999999999999999999877654331         1237999999984 456888899999999999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      +.. .++..++.+.....-....|..+            +.++++++.|..|+||+...+.
T Consensus       532 ~~~-~lv~KfKG~~n~~SQ~~Asfs~D------------gk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  532 RDK-DLVHKFKGFRNTSSQISASFSSD------------GKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             cch-hhhhhhcccccCCcceeeeEccC------------CCEEEEeecCceEEEEeCCCCc
Confidence            776 45555664444444455666664            4555556789999999885443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.74  E-value=5.3e-17  Score=186.82  Aligned_cols=150  Identities=13%  Similarity=0.272  Sum_probs=129.7

Q ss_pred             ccCCCCEEEEEE--CCCcEEEEECCC------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 006743            2 YNCKDEHLASIS--LSGDLILHNLAS------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT   67 (633)
Q Consensus         2 FSpdG~~LaSgs--~DG~I~IWDl~t------------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl   67 (633)
                      .+|||..+++|+  .||.+.||+...            .+.++... .|...|.|+.|++||. +||+|++|+.|.||+.
T Consensus        21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~   98 (942)
T KOG0973|consen   21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGS-YLASGSDDRLVMIWER   98 (942)
T ss_pred             ecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCC-eEeeccCcceEEEeee
Confidence            479999999999  899999998742            12334444 3778899999999998 8999999999999998


Q ss_pred             CC----CC-------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEE
Q 006743           68 TG----RS-------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLA  129 (633)
Q Consensus        68 ~t----~~-------------~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLa  129 (633)
                      ..    ..             ..+..+.+|...|.+++|+|++.+|++++.|++|.|||.++.+.+..+ +|.+.|..+.
T Consensus        99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs  178 (942)
T KOG0973|consen   99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS  178 (942)
T ss_pred             cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence            72    00             125668899999999999999999999999999999999999877777 6999999999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCC
Q 006743          130 FIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus       130 fSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      |+|-|+||++-+.|++|+||+...
T Consensus       179 ~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  179 WDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             ECCccCeeeeecCCceEEEEEccc
Confidence            999999999999999999999664

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=1.3e-17  Score=170.41  Aligned_cols=189  Identities=14%  Similarity=0.244  Sum_probs=163.9

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC------CCC-----------
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT------TGR-----------   70 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl------~t~-----------   70 (633)
                      .+.+++.|.+.+||.+++++++..+.+ |.+.|++|+|++.+. ++++++.|++.+||..      ...           
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecc-cccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            567889999999999999999999997 667789999999987 8999999999999962      110           


Q ss_pred             ----------------------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEE
Q 006743           71 ----------------------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS  127 (633)
Q Consensus        71 ----------------------~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~Its  127 (633)
                                            ..++..+.+|...|.+..|...++.+++++.|.+..+||++++.++..+ +|....+.
T Consensus       240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH  319 (481)
T KOG0300|consen  240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH  319 (481)
T ss_pred             hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc
Confidence                                  0113457789999999999999999999999999999999999999888 69999999


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          128 LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       128 LafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      ++-+|..+.+++.+.|-+.++||.+..-+.+.++.  +|...|+++.|..+             ..+++++.|.+|||||
T Consensus       320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--GHtdtVTS~vF~~d-------------d~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--GHTDTVTSVVFNTD-------------DRVVSGSDDRTVKVWD  384 (481)
T ss_pred             cccCCcceEEEEeccCceeEeccchhhcceeeeec--ccccceeEEEEecC-------------CceeecCCCceEEEee
Confidence            99999999999999999999999997666666666  99999999999863             3567888899999999


Q ss_pred             CCCCCC
Q 006743          208 PLPSVT  213 (633)
Q Consensus       208 lr~~~~  213 (633)
                      ++....
T Consensus       385 LrNMRs  390 (481)
T KOG0300|consen  385 LRNMRS  390 (481)
T ss_pred             eccccC
Confidence            996543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=5e-17  Score=180.61  Aligned_cols=191  Identities=15%  Similarity=0.145  Sum_probs=160.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC-----CceeEEEeCC------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLAS-----GAKAAELKDP------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~t-----gk~v~~~~~~------~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      .+||++.+++|+.|.+|++||..-     +...+.+.-+      -.+.|.|+.++||++ +|+.+--|.+|+||-+.+-
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl  540 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL  540 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecce
Confidence            478999999999999999999741     1111111111      245688899999998 8999999999999999988


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IW  149 (633)
                      +. ...+.+|.-+|.|+..+||++.+++|+.|+.|+||-+.-|.|.+.+ +|.+.|.++.|.|....+++++.|+.|+-|
T Consensus       541 KF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW  619 (888)
T KOG0306|consen  541 KF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW  619 (888)
T ss_pred             ee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence            85 4578999999999999999999999999999999999988887655 899999999999999999999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |-.+.. .+..+.  +|...|+|++..|+|.+++            +++.|..|++|.-.
T Consensus       620 Dg~kFe-~iq~L~--~H~~ev~cLav~~~G~~vv------------s~shD~sIRlwE~t  664 (888)
T KOG0306|consen  620 DGEKFE-EIQKLD--GHHSEVWCLAVSPNGSFVV------------SSSHDKSIRLWERT  664 (888)
T ss_pred             chhhhh-hheeec--cchheeeeeEEcCCCCeEE------------eccCCceeEeeecc
Confidence            988763 344444  8999999999999666554            45779999999653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.74  E-value=1e-16  Score=169.59  Aligned_cols=191  Identities=17%  Similarity=0.230  Sum_probs=157.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~-~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .+|.|+||++++.||.+...|+.++..+...... ..-.+++.+|+|||- +|.+|..|+.|+|||+.... .+..+.+|
T Consensus       311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~-~~a~Fpgh  388 (506)
T KOG0289|consen  311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT-NVAKFPGH  388 (506)
T ss_pred             eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc-ccccCCCC
Confidence            4789999999999999999999999988887642 334588899999997 99999999999999998877 46788999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      .++|..++|+.+|-+++++++|+.|++||+|..+....+.  ....+.+++|++.|.+|+.++.|=+|++++-.+. .--
T Consensus       389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~  467 (506)
T KOG0289|consen  389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWT  467 (506)
T ss_pred             CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc-cce
Confidence            9999999999999999999999999999999988777774  3446999999999999999988877888775543 222


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      .......|.+..+++.|...            ..++++++.|..++++-
T Consensus       468 ~~~~~~~~sg~st~v~Fg~~------------aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  468 EIKELADHSGLSTGVRFGEH------------AQYLASTSMDAILRLYA  504 (506)
T ss_pred             eeehhhhcccccceeeeccc------------ceEEeeccchhheEEee
Confidence            23333468888999998774            44555556777777653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=5.6e-17  Score=178.08  Aligned_cols=192  Identities=20%  Similarity=0.270  Sum_probs=159.5

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCCc-------
Q 006743            3 NCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTTGRSP-------   72 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLaf-Spdg~~lLaSGs~DGtI~IWDl~t~~~-------   72 (633)
                      ..+|+.|++++.|-+|++|+...+.  +...+. .|.+.|.|+++ .++. .++|+|+-|+.|.|||+..+..       
T Consensus        82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n  159 (735)
T KOG0308|consen   82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFN  159 (735)
T ss_pred             hcCCCceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhcc
Confidence            4578899999999999999987663  444454 47888999999 5554 4899999999999999986521       


Q ss_pred             --eeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           73 --KVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        73 --~v~~l~-~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                        ....+. ++...|++++.++.+..|++|+..+.|++||.++++.+..+ +|...|.++..++||..+++++.||+|++
T Consensus       160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl  239 (735)
T KOG0308|consen  160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL  239 (735)
T ss_pred             ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence              122233 78899999999999999999999999999999998766554 89999999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ||+... +++..+.  .|...|+++..+|+            -..+++|+.|+.|..-|++.+
T Consensus       240 WdLgqQ-rCl~T~~--vH~e~VWaL~~~~s------------f~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  240 WDLGQQ-RCLATYI--VHKEGVWALQSSPS------------FTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eecccc-ceeeeEE--eccCceEEEeeCCC------------cceEEecCCCCcEEecccCCc
Confidence            999987 4555555  78889999998874            445666778999999999876

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.74  E-value=1.1e-16  Score=160.47  Aligned_cols=196  Identities=15%  Similarity=0.237  Sum_probs=163.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEE--eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAEL--KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~--~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+.+|.+|++|+.|+++.+|+++..+.....  .+ |.+.|..++|.|....+|++++.|++|++||++..++.. .+.
T Consensus        27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~-~i~  104 (313)
T KOG1407|consen   27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA-RIE  104 (313)
T ss_pred             EEcccCceeeecccCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE-Eee
Confidence            58999999999999999999999877655443  34 444556689998887799999999999999999988643 333


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      .. ..-.-+.|+|+|.+++.++.|..|.+.|.++.+..........+.-++|+-++.+++.....|.|.|...... +++
T Consensus       105 ~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv  182 (313)
T KOG1407|consen  105 TK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPV  182 (313)
T ss_pred             cc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc-ccc
Confidence            33 3334578999999999999999999999999998888888888999999999999999999999999998865 566


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      ..++  +|.....||.|+|+|+|++++            +.|..+-+||+....+.
T Consensus       183 ~si~--AH~snCicI~f~p~GryfA~G------------sADAlvSLWD~~ELiC~  224 (313)
T KOG1407|consen  183 QSIK--AHPSNCICIEFDPDGRYFATG------------SADALVSLWDVDELICE  224 (313)
T ss_pred             cccc--cCCcceEEEEECCCCceEeec------------cccceeeccChhHhhhh
Confidence            6676  899999999999977666555            77999999999866653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.73  E-value=1.5e-17  Score=177.86  Aligned_cols=177  Identities=18%  Similarity=0.226  Sum_probs=152.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +.+||+.|++|+.-.+|.|||+.......  ++.. ....+.+++.+||.. +.++++.||.|.|||+.+.. +++.+.+
T Consensus       473 L~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-~VrqfqG  549 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-LVRQFQG  549 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-eeecccC
Confidence            46899999999999999999998654332  2322 345677899999987 88899999999999999877 5889999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      |.+.+.||.+++||..|.+|+-|++||.||++.++.+........|.++-++|.+.+|++|-.++.|.|.......    
T Consensus       550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----  625 (705)
T KOG0639|consen  550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----  625 (705)
T ss_pred             CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc----
Confidence            9999999999999999999999999999999999988888888999999999999999999999999998887663    


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      .+...-|...|.++.|.+.|+++++.
T Consensus       626 kyqlhlheScVLSlKFa~cGkwfvSt  651 (705)
T KOG0639|consen  626 KYQLHLHESCVLSLKFAYCGKWFVST  651 (705)
T ss_pred             ceeecccccEEEEEEecccCceeeec
Confidence            23444799999999999988777644

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=4.3e-17  Score=162.25  Aligned_cols=195  Identities=14%  Similarity=0.204  Sum_probs=155.8

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCC---ceeEEEeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCCc-eeEE
Q 006743            3 NCKDEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRSP-KVSW   76 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tg---k~v~~~~~~~~~~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~~~-~v~~   76 (633)
                      ...|++||+|+.|+.|+|+.+..+   +.+.++.+ |.++|.-++|..  .|. +|++++.||.|.||.-.++.. +...
T Consensus        20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e   97 (299)
T KOG1332|consen   20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYE   97 (299)
T ss_pred             hhhcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhh
Confidence            345899999999999999998754   46677887 666777789975  566 999999999999999877652 2344


Q ss_pred             eccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC-c-ee--eEeeCCCCeEEEEEecC---C-----------CE
Q 006743           77 LKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR-R-PS--SCITYEAPFSSLAFIDD---D-----------WI  136 (633)
Q Consensus        77 l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtg-k-~v--~~i~h~~~ItsLafSPd---G-----------~~  136 (633)
                      ...|...|++++|.|  .|-.|++++.||.|.|.+.+.. . ..  ....|.-.|++++|.|.   |           +.
T Consensus        98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr  177 (299)
T KOG1332|consen   98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR  177 (299)
T ss_pred             hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence            567999999999999  6788999999999999998864 2 11  22369999999999995   4           67


Q ss_pred             EEEEEcCCeEEEEECCCCCCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          137 LTAGTSNGRVVFYDIRGKPQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       137 LatGs~DGsV~IWDlrs~~k~-v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |++|+.|..|+||+..+..-. .+.+.  +|.+.|..++|.|.-        .-...++++++.|++|.||-.+
T Consensus       178 lvSgGcDn~VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~--------gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  178 LVSGGCDNLVKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSV--------GLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             eeccCCccceeeeecCCcchhhhhhhh--hcchhhhhhhhcccc--------CCCceeeEEecCCCcEEEEEec
Confidence            999999999999999875211 12233  899999999999952        2355678999999999999654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.72  E-value=3.3e-16  Score=157.15  Aligned_cols=194  Identities=14%  Similarity=0.254  Sum_probs=157.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-----------
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-----------   73 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-----------   73 (633)
                      +...+++++.|..|++||...++++..+.. ..+.+. +.|+|+|. +++.++.|..|...|.++.+..           
T Consensus        76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~-i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne  152 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRSGKCTARIET-KGENIN-ITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNE  152 (313)
T ss_pred             CCcceEEecCCceEEEEEeccCcEEEEeec-cCcceE-EEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeee
Confidence            456899999999999999999999988875 445555 78999998 7888999988888887543311           


Q ss_pred             -----------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCC
Q 006743           74 -----------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEA  123 (633)
Q Consensus        74 -----------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~  123 (633)
                                                   +..++.|.....||.|+|+|++||+|+.|..+.+||+..--+++.+ .+.-
T Consensus       153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw  232 (313)
T KOG1407|consen  153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW  232 (313)
T ss_pred             eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence                                         3456789999999999999999999999999999999998888888 5889


Q ss_pred             CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeE
Q 006743          124 PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI  203 (633)
Q Consensus       124 ~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~I  203 (633)
                      +|..+.|+.||++||+|++|..|-|=+++++.+... +   .+.++...++|+|....|+.+.+..++.   .....+.|
T Consensus       233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-I---~~~~~t~tVAWHPk~~LLAyA~ddk~~d---~~reag~v  305 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-I---PCEGPTFTVAWHPKRPLLAYACDDKDGD---SNREAGTV  305 (313)
T ss_pred             ceEEEEeccCcceeeccCccceEEeEecccCCeEEE-e---eccCCceeEEecCCCceeeEEecCCCCc---ccccccee
Confidence            999999999999999999999999999999864332 2   4789999999999888887664444431   11223677


Q ss_pred             EccCC
Q 006743          204 LMPDP  208 (633)
Q Consensus       204 kIWDl  208 (633)
                      |+|-+
T Consensus       306 KiFG~  310 (313)
T KOG1407|consen  306 KIFGL  310 (313)
T ss_pred             EEecC
Confidence            77644

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.72  E-value=8e-17  Score=171.40  Aligned_cols=192  Identities=17%  Similarity=0.222  Sum_probs=158.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |.++||+|||+|+.|..|.||+..+.+.+..+++ |.+.|.+++|-... +-+++++.|+.|++|++..... +.++.+|
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~-vetlyGH  285 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSY-VETLYGH  285 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCc-cceeeeecCCceEEEehhHhHH-HHHHhCC
Confidence            4689999999999999999999999999999886 67778889997554 4799999999999999987773 6788999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ...|.+|....-.+.+.+|+.|+++++|++.....+...++.+.+.|++|-.+ ..+++|+.||.|.+|++-+. +|+.+
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK-kplf~  363 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK-KPLFT  363 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc-CceeE
Confidence            99999999887778888888999999999966555555578889999999855 57889999999999999877 45554


Q ss_pred             EeecCC-----------CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          161 LRACSS-----------SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       161 l~~~~H-----------~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ... +|           ..+|++++..|            +..++++|+.+|.|++|-+..
T Consensus       364 ~~~-AHgv~~~~~~~~~~~Witsla~i~------------~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  364 SRL-AHGVIPELDPVNGNFWITSLAVIP------------GSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             eec-cccccCCccccccccceeeeEecc------------cCceEEecCCCCceEEEEecC
Confidence            432 22           22788888777            566777778899999997643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.72  E-value=9.2e-17  Score=163.24  Aligned_cols=191  Identities=16%  Similarity=0.177  Sum_probs=152.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCc------ee----EE----EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            5 KDEHLASISLSGDLILHNLASGA------KA----AE----LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk------~v----~~----~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      .|+|+++|+.||.|.+||++...      .+    +.    ....|+..|..+.|.|.+.-.|.+++-|.+++|||..+.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl  134 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL  134 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence            58899999999999999997532      11    11    123467788999999988778999999999999999987


Q ss_pred             CceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCE-EEEEEcCCe
Q 006743           71 SPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWI-LTAGTSNGR  145 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSP---dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~-LatGs~DGs  145 (633)
                      +.  .......+.|+.-+|+|   ...+|++|..|-.|++.|+.+|.....+ +|.+.|.++.|+|...+ |++|+.||.
T Consensus       135 Q~--a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~  212 (397)
T KOG4283|consen  135 QE--AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA  212 (397)
T ss_pred             ee--eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence            73  33445678899999999   4678889999999999999999998888 79999999999997655 668999999


Q ss_pred             EEEEECCCCCCceEEEe------------ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          146 VVFYDIRGKPQPLTVLR------------ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~------------~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |++||+|...-++.++.            ...|.+.|.+++|..++.+            +++++.|..+++|+..
T Consensus       213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~------------l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY------------LASCGTDDRIRVWNME  276 (397)
T ss_pred             EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh------------hhhccCccceEEeecc
Confidence            99999996533333332            3467888889998875544            4555779999999763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.72  E-value=9e-18  Score=171.95  Aligned_cols=190  Identities=14%  Similarity=0.153  Sum_probs=159.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .|+.|.+.||+|+.||.|+||.+.+|.+++.|...|...|+|+.|+.|+. .+++++.|.+++|.-+..+++ .+.+++|
T Consensus       270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~-LKEfrGH  347 (508)
T KOG0275|consen  270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKC-LKEFRGH  347 (508)
T ss_pred             eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchh-HHHhcCc
Confidence            38889999999999999999999999999999877888899999999998 688999999999999998885 5778999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee----------------------------------------
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----------------------------------------  120 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~----------------------------------------  120 (633)
                      ...|+...|.++|.++++++.||+|++|+.++..++.++.                                        
T Consensus       348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV  427 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV  427 (508)
T ss_pred             cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence            9999999999999999999999999999987654432221                                        


Q ss_pred             --------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743          121 --------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (633)
Q Consensus       121 --------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~  192 (633)
                              ..+...+++.+|.|.++.+.++|+.++.|...+++ ..+.+.  .|...|..++-+|..+.++         
T Consensus       428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~-LE~tl~--VhEkdvIGl~HHPHqNllA---------  495 (508)
T KOG0275|consen  428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK-LERTLP--VHEKDVIGLTHHPHQNLLA---------  495 (508)
T ss_pred             eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc-eeeeee--cccccccccccCcccchhh---------
Confidence                    12334466788899999999999999999988773 334444  6888889999888554444         


Q ss_pred             EEEEeeCCCeEEccC
Q 006743          193 ALLGGAVGDSILMPD  207 (633)
Q Consensus       193 lLlSgs~Dg~IkIWD  207 (633)
                         +-+.|+.+++|.
T Consensus       496 ---sYsEDgllKLWk  507 (508)
T KOG0275|consen  496 ---SYSEDGLLKLWK  507 (508)
T ss_pred             ---hhcccchhhhcC
Confidence               446799999995

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=2.3e-16  Score=173.47  Aligned_cols=194  Identities=17%  Similarity=0.281  Sum_probs=155.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-C
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-H   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~-H   80 (633)
                      |+ ..+.|++|. ...|++|+..+++.......+ ...|+++.|+++|. +|++|..+|.|.|||....+. +..+.. |
T Consensus       185 Ws-s~n~laVal-g~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~-~~~~~~~h  259 (484)
T KOG0305|consen  185 WS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKK-TRTLRGSH  259 (484)
T ss_pred             cc-cCCeEEEEe-cceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhccc-cccccCCc
Confidence            44 345666664 558999999888855555433 67889999999998 899999999999999987774 566677 9


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ...|-+++|+  ...+.+|+.|+.|..+|++..+.... + .|...|..+.|++|+.++|+|+.|+.|.|||..... +.
T Consensus       260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~  336 (484)
T KOG0305|consen  260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PK  336 (484)
T ss_pred             CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-cc
Confidence            9999999999  78899999999999999998765544 3 699999999999999999999999999999996653 33


Q ss_pred             EEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~-~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s  215 (633)
                      ..+.  .|...|.+++|+|-.. .||++          +|+.|+.|++||+..-....
T Consensus       337 ~~~~--~H~aAVKA~awcP~q~~lLAsG----------GGs~D~~i~fwn~~~g~~i~  382 (484)
T KOG0305|consen  337 FTFT--EHTAAVKALAWCPWQSGLLATG----------GGSADRCIKFWNTNTGARID  382 (484)
T ss_pred             EEEe--ccceeeeEeeeCCCccCceEEc----------CCCcccEEEEEEcCCCcEec
Confidence            4444  7999999999999432 23332          23459999999997544433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=1.5e-16  Score=176.87  Aligned_cols=199  Identities=16%  Similarity=0.174  Sum_probs=166.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC------CCceeE
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG------RSPKVS   75 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t------~~~~v~   75 (633)
                      |-|.++++++|...|.+.+||+.+...+..++. |.+.+..++..|++. .+++|+.|++|++||..-      .+.++.
T Consensus       420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A-HdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~l  497 (888)
T KOG0306|consen  420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRA-HDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVL  497 (888)
T ss_pred             ecCCCceEEEeccCCceEEEEeehhhhhhhhhc-cccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceee
Confidence            678889999999999999999999888888874 778889999999998 799999999999999731      111111


Q ss_pred             -----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743           76 -----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-CITYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (633)
Q Consensus        76 -----~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-~i~h~~~ItsLafSPdG~~LatGs~DGsV~IW  149 (633)
                           ....-...|.|+.++||+++|+++--|++|+||-+.+-+... .++|.-+|.||.++||++.+++|+.|..|+||
T Consensus       498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence                 112345789999999999999999999999999999877654 44899999999999999999999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      -+.-+.+ .+.+  ++|...|.++.|.|            ...++++++.|+.|+.||-..|.....+
T Consensus       578 GLdFGDC-HKS~--fAHdDSvm~V~F~P------------~~~~FFt~gKD~kvKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  578 GLDFGDC-HKSF--FAHDDSVMSVQFLP------------KTHLFFTCGKDGKVKQWDGEKFEEIQKL  630 (888)
T ss_pred             ccccchh-hhhh--hcccCceeEEEEcc------------cceeEEEecCcceEEeechhhhhhheee
Confidence            9987743 2333  37999999999999            5677788899999999998887765544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.71  E-value=2.4e-16  Score=181.41  Aligned_cols=191  Identities=16%  Similarity=0.244  Sum_probs=151.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC------------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743            2 YNCKDEHLASISLSGDLILHNLAS------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~t------------------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~   63 (633)
                      |++||++||+|+.|+.|.||+...                  .+.+..+.+ |..-|.+++|+|++. +|++++.|++|.
T Consensus        77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~-~lvS~s~DnsVi  154 (942)
T KOG0973|consen   77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDS-LLVSVSLDNSVI  154 (942)
T ss_pred             ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCcc-EEEEecccceEE
Confidence            899999999999999999999762                  124556666 556677899999988 999999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------------------------
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-----------------------------  114 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-----------------------------  114 (633)
                      ||+..+.+ .+..+++|...|..+.|.|-|++|++-+.|++|+||++.+..                             
T Consensus       155 iwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  155 IWNAKTFE-LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             EEccccce-eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence            99999985 588999999999999999999999999999999999952210                             


Q ss_pred             ------------------------eeeEeeCCCCeEEEEEecC-----CC------------EEEEEEcCCeEEEEECCC
Q 006743          115 ------------------------PSSCITYEAPFSSLAFIDD-----DW------------ILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus       115 ------------------------~v~~i~h~~~ItsLafSPd-----G~------------~LatGs~DGsV~IWDlrs  153 (633)
                                              ....++|.+++.+++|+|.     .+            ++|+|+.|+.|.||....
T Consensus       234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence                                    0122368889999999982     12            688999999999999865


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      . +|+.+... -....|..++|+|||-.|            +.++.||+|.+.++.
T Consensus       314 ~-RPl~vi~~-lf~~SI~DmsWspdG~~L------------facS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  314 P-RPLFVIHN-LFNKSIVDMSWSPDGFSL------------FACSLDGTVALIHFE  355 (942)
T ss_pred             C-Cchhhhhh-hhcCceeeeeEcCCCCeE------------EEEecCCeEEEEEcc
Confidence            5 45544432 245789999999965554            444667777766553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.71  E-value=7.3e-17  Score=169.85  Aligned_cols=188  Identities=17%  Similarity=0.281  Sum_probs=146.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--------------
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--------------   67 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl--------------   67 (633)
                      |.++++++++++.|+.+++|++...+...++.+ |.+.|+++.|..... .+++|+.|.+|++||+              
T Consensus       227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~  304 (459)
T KOG0288|consen  227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQ  304 (459)
T ss_pred             ecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccccc
Confidence            778899999999999999999999988888887 667777777765543 3555555555555555              


Q ss_pred             -------------------------CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--
Q 006743           68 -------------------------TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--  120 (633)
Q Consensus        68 -------------------------~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--  120 (633)
                                               +...+ ......+ +.|+++..++++..+.+++.|.++.+.|+++......+.  
T Consensus       305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~-~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  305 CNDIVCSISDVISGHFDKKVRFWDIRSADK-TRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             ccceEecceeeeecccccceEEEeccCCce-eeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence                                     33332 2222333 479999999999999999999999999999988877763  


Q ss_pred             ---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006743          121 ---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG  197 (633)
Q Consensus       121 ---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg  197 (633)
                         .....+.++|+|++.|+++|+.||.|+||++.++ ++.+.+........|++++|+|.|.+++++            
T Consensus       383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsa------------  449 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSA------------  449 (459)
T ss_pred             ccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCCchhhcc------------
Confidence               3455889999999999999999999999999988 555666654444479999999976666554            


Q ss_pred             eCCCeEEcc
Q 006743          198 AVGDSILMP  206 (633)
Q Consensus       198 s~Dg~IkIW  206 (633)
                      +.++.+.+|
T Consensus       450 dk~~~v~lW  458 (459)
T KOG0288|consen  450 DKQKAVTLW  458 (459)
T ss_pred             cCCcceEec
Confidence            557778887

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.71  E-value=1.1e-16  Score=166.86  Aligned_cols=177  Identities=18%  Similarity=0.330  Sum_probs=137.8

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCCcee---EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 006743            2 YNCKD-EHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW   76 (633)
Q Consensus         2 FSpdG-~~LaSgs~DG~I~IWDl~tgk~v---~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~   76 (633)
                      |+|-. ..|++|..-+.|++|...++.-.   ..+.+ |...|..++|+|..+.+|++|+.||+|+|||++.+. .....
T Consensus       219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~  297 (440)
T KOG0302|consen  219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS  297 (440)
T ss_pred             cccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence            56522 24778888889999999887643   23445 778889999999999999999999999999998763 22344


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---gk~v~~i-~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDl  151 (633)
                      .+.|...|+.|.|+.+-.+|++|+.||+++|||+|.   ++++..+ .|..+|+++.|+|. ...|++++.|..|.|||+
T Consensus       298 ~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  298 TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            589999999999999777999999999999999986   5566666 49999999999995 567889999999999998


Q ss_pred             CCCCC---------------ceEEEeecCCCCCeeEEEEccCC
Q 006743          152 RGKPQ---------------PLTVLRACSSSEAVSSLCWQRAK  179 (633)
Q Consensus       152 rs~~k---------------~v~~l~~~~H~~~VtsLafsPdg  179 (633)
                      .-...               |-..+-.+.-...|..+.|+++-
T Consensus       378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Qi  420 (440)
T KOG0302|consen  378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQI  420 (440)
T ss_pred             eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCC
Confidence            64221               11122211224568889999863

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.1e-17  Score=185.24  Aligned_cols=178  Identities=20%  Similarity=0.315  Sum_probs=156.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |+.+..+|++|..+|+|++||++.++.++.+.+|... +..|.|+|.+. +++.|+.|+.+++||++...+ .+.+.+|.
T Consensus        78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~-~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~  154 (825)
T KOG0267|consen   78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN-ITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGC-SHTYKSHT  154 (825)
T ss_pred             cCcchhhhcccccCCceeeeehhhhhhhhhhhccccC-cceeeeccceE-EeccccccccceehhhhccCc-eeeecCCc
Confidence            6777888999999999999999999999999885544 45589999998 789999999999999996664 67788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..|.+++|+|+|++++++++|.+++|||+..|+....+. |++.+..+.|+|..-.++.|+.|++|++||+++.. .+. 
T Consensus       155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-~I~-  232 (825)
T KOG0267|consen  155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-VIS-  232 (825)
T ss_pred             ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-Eee-
Confidence            999999999999999999999999999999999998885 99999999999999999999999999999999752 111 


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEe
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                       ........|.+..|+|++..+.++
T Consensus       233 -s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  233 -SGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             -ccCCccCCceeeeecCCceeeecC
Confidence             112346789999999999888876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.71  E-value=1.4e-16  Score=162.80  Aligned_cols=151  Identities=17%  Similarity=0.243  Sum_probs=130.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCcee---EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v---~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      .|+|....|++|+.|++|++||.......   +.++  ....|+++.|+|.|+ +|+.|.+-.++++||+.+.++.+...
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecC
Confidence            48999999999999999999998653322   2233  457899999999999 89999999999999999887654432


Q ss_pred             --ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--C-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           78 --KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--Y-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        78 --~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                        .+|.+.|+++.+++.+++.++++.||.|++||--+++++..++  | +..|.+..|..+|+||++.+.|..|++|.+.
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence              4689999999999999999999999999999999999998884  4 4569999999999999999999999999998


Q ss_pred             CC
Q 006743          153 GK  154 (633)
Q Consensus       153 s~  154 (633)
                      ++
T Consensus       336 t~  337 (430)
T KOG0640|consen  336 TG  337 (430)
T ss_pred             CC
Confidence            76

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=3e-16  Score=155.53  Aligned_cols=161  Identities=20%  Similarity=0.351  Sum_probs=142.8

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 006743           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR  114 (633)
Q Consensus        35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk  114 (633)
                      .+.+.|+++.|+-+|+ +.++++.|++|++|+...+.. +++..+|...|.+++.+.|...|++|+.|+.|.+||+.+|+
T Consensus        15 ~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~l-iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGAL-IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             ccccceEEEEEccCCC-EEEEcCCCceEEeecccccce-eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence            3678899999999998 899999999999999987774 78899999999999999999999999999999999999999


Q ss_pred             eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743          115 PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (633)
Q Consensus       115 ~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~  192 (633)
                      .++.+ +|.+.|+.++|+.+...+++|+.|..|++||.|.. .+|++++.  .....|.+|...              ++
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild--ea~D~V~Si~v~--------------~h  156 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD--EAKDGVSSIDVA--------------EH  156 (307)
T ss_pred             eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh--hhcCceeEEEec--------------cc
Confidence            99888 69999999999999999999999999999999974 35666666  456778888763              46


Q ss_pred             EEEEeeCCCeEEccCCCCCCC
Q 006743          193 ALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       193 lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .+++|+.||+++.||+|.-.-
T Consensus       157 eIvaGS~DGtvRtydiR~G~l  177 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTL  177 (307)
T ss_pred             EEEeeccCCcEEEEEeeccee
Confidence            788899999999999996443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.68  E-value=2.6e-16  Score=173.79  Aligned_cols=193  Identities=19%  Similarity=0.236  Sum_probs=157.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +.+|+|++||+|..-|.|+||++..-+..+.+.. |...|.|+.|+..  +..+|++++.|..|+|||+...-.++.++.
T Consensus       466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld  544 (1080)
T KOG1408|consen  466 AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD  544 (1080)
T ss_pred             EECCCcceecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence            3689999999999999999999998888888876 6677888999843  345899999999999999854332333333


Q ss_pred             cCCC-------------------------------------------------CeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743           79 QHSA-------------------------------------------------PTAGISFSSDDKIIASVGLDKKLYTYD  109 (633)
Q Consensus        79 ~H~~-------------------------------------------------~VtsLafSPdg~~LaSgS~DGtVrIWD  109 (633)
                      +|..                                                 .+++++..|..+++++++.|+.|+|||
T Consensus       545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~  624 (1080)
T KOG1408|consen  545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD  624 (1080)
T ss_pred             ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence            3333                                                 456677777788899999999999999


Q ss_pred             CCCCceeeEee----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          110 PGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       110 lrtgk~v~~i~----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +.+++.++.+.    |++....+..+|.|.||++.+.|.++.+||.-+++. +  -..++|.+.|+.+.|.+|       
T Consensus       625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc-v--A~m~GHsE~VTG~kF~nD-------  694 (1080)
T KOG1408|consen  625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC-V--AQMTGHSEAVTGVKFLND-------  694 (1080)
T ss_pred             ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh-h--hhhcCcchheeeeeeccc-------
Confidence            99999998883    678888899999999999999999999999999853 3  334589999999999985       


Q ss_pred             ccCCCCeEEEEeeCCCeEEccCCC
Q 006743          186 TTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       186 s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                           ...|++.+.|+.|.||.+-
T Consensus       695 -----CkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  695 -----CKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             -----chhheeecCCceEEEEECc
Confidence                 4455666789999999874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.68  E-value=2.2e-15  Score=151.68  Aligned_cols=148  Identities=14%  Similarity=0.185  Sum_probs=125.7

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----CCCeEEEEECCCC------Cc
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----DDGTLHLWDTTGR------SP   72 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs-----~DGtI~IWDl~t~------~~   72 (633)
                      .+.++|++|+.|.++++||+++|+.+..++  ...+|..+.|+.+|. +++.+.     ..+.|.++|++..      +.
T Consensus        62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   62 WDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             CCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence            456789999999999999999999999987  567889999999998 444433     3467999999722      22


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      +...+..+...++...|.|-++.|++|..||.|.+||+++++....-  .|...|+.|++++|..++++++.|.+-++||
T Consensus       139 p~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  139 PYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVD  218 (327)
T ss_pred             ceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeee
Confidence            35667778899999999999999999999999999999998655443  4888999999999999999999999999999


Q ss_pred             CCCC
Q 006743          151 IRGK  154 (633)
Q Consensus       151 lrs~  154 (633)
                      .++.
T Consensus       219 ~~tl  222 (327)
T KOG0643|consen  219 VRTL  222 (327)
T ss_pred             ccce
Confidence            9864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=1.4e-15  Score=161.52  Aligned_cols=194  Identities=14%  Similarity=0.165  Sum_probs=151.3

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG   86 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vts   86 (633)
                      +.||+|+.|.+|++||+.++++...+. +|+..|.++.|+|....+|++|+.|++|.++|++.....-..++ ..+.|..
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEk  334 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEK  334 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEE
Confidence            578999999999999999999999887 68889999999999988999999999999999985433222232 4578999


Q ss_pred             EEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743           87 ISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (633)
Q Consensus        87 LafSP-dg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v~~l~  162 (633)
                      ++|.| ....++++..||+|+.+|+|.. +++..+ .|.+.|.+++++.. -.++++++.|+.|++|++..... ..+..
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~  413 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKE  413 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-ccccc
Confidence            99999 7788999999999999999975 777766 69999999999985 46788999999999999986422 11111


Q ss_pred             ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       163 ~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      ..-.-+...|.++.|+           ....++.|+..+.++|||+....+.
T Consensus       414 ~~~~~~rl~c~~~~~~-----------~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPD-----------VAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccccceeecccCCC-----------cceEEEecCccceEEEeecccChhH
Confidence            0011234666777775           2334455555678999999765553

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=4.8e-16  Score=169.80  Aligned_cols=181  Identities=17%  Similarity=0.273  Sum_probs=143.1

Q ss_pred             ccCCCCEEEE--EECCCcEEEEECCCCcee-----EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---
Q 006743            2 YNCKDEHLAS--ISLSGDLILHNLASGAKA-----AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---   71 (633)
Q Consensus         2 FSpdG~~LaS--gs~DG~I~IWDl~tgk~v-----~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---   71 (633)
                      |+++.+++|+  ++..|.|.||+++....+     -.+.  ++..|.++.|.|.+.+.|+.+++||.|+||.+..+.   
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e  664 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE  664 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence            5666777765  466799999999754322     2222  457889999999888899999999999999985433   


Q ss_pred             ---ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeE
Q 006743           72 ---PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRV  146 (633)
Q Consensus        72 ---~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV  146 (633)
                         .....+..|...|+.+.|+| ..+.|++++.|-+|++||+++++....+ +|.+.|..++|+|||+.+++.+.||+|
T Consensus       665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~  744 (1012)
T KOG1445|consen  665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL  744 (1012)
T ss_pred             ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence               22466889999999999999 8889999999999999999998766554 899999999999999999999999999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ++|..+..++++..-... ....-..|.|.-+|+++++.
T Consensus       745 rVy~Prs~e~pv~Eg~gp-vgtRgARi~wacdgr~viv~  782 (1012)
T KOG1445|consen  745 RVYEPRSREQPVYEGKGP-VGTRGARILWACDGRIVIVV  782 (1012)
T ss_pred             EEeCCCCCCCccccCCCC-ccCcceeEEEEecCcEEEEe
Confidence            999999987766544322 12334456677677766644

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.68  E-value=5.8e-17  Score=170.59  Aligned_cols=205  Identities=14%  Similarity=0.181  Sum_probs=163.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      |-++...|++|+.|..|++|++...+  .+..+.+ ....|..++|.+++. .+++++.|+.+++|++..... .+++.+
T Consensus       183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~~r~-~~TLsG  259 (459)
T KOG0288|consen  183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDSLRL-RHTLSG  259 (459)
T ss_pred             EccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCc-eEEeecCCCceeeeeccchhh-hhhhcc
Confidence            44566789999999999999987666  4455554 456688899999998 677889999999999988774 678999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      |.+.|+++.|......+++|+.|.+|+.||+....+.+.+-....+..|+.+  ...+++|+.|++|++||++.... ..
T Consensus       260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~-~~  336 (459)
T KOG0288|consen  260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK-TR  336 (459)
T ss_pred             cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCce-ee
Confidence            9999999999886666999999999999999998888877666777777776  56788999999999999998742 23


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEec----------------------------------cCCCCeEEEEeeCCCeEEc
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDET----------------------------------TCKAETALLGGAVGDSILM  205 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s----------------------------------~~sd~~lLlSgs~Dg~IkI  205 (633)
                      ...   -.+.|+++..++++..|.+++                                  .++++.|+++|+.|+.|+|
T Consensus       337 sv~---~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i  413 (459)
T KOG0288|consen  337 SVP---LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI  413 (459)
T ss_pred             Eee---cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence            332   345888888888777666442                                  3557778888888999999


Q ss_pred             cCCCCCCCCC
Q 006743          206 PDPLPSVTTS  215 (633)
Q Consensus       206 WDlr~~~~~s  215 (633)
                      |++..-....
T Consensus       414 W~v~tgKlE~  423 (459)
T KOG0288|consen  414 WSVFTGKLEK  423 (459)
T ss_pred             EEccCceEEE
Confidence            9886555433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.68  E-value=6.6e-16  Score=164.51  Aligned_cols=200  Identities=16%  Similarity=0.264  Sum_probs=166.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEE----------------e-CCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAEL----------------K-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~----------------~-~~~~~~VssLafSpdg~~lLaSGs~DGtI~   63 (633)
                      +++++++++++++.+|+|.=|++.+++....+                . ..|...+.+++.++|++ +|++|+.|..|.
T Consensus       149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-ylatgg~d~~v~  227 (479)
T KOG0299|consen  149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-YLATGGRDRHVQ  227 (479)
T ss_pred             EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-EEEecCCCceEE
Confidence            46899999999999999999999888743111                0 02445567799999998 999999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEc
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~  142 (633)
                      |||.++.+. ++.+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++ +|.+.|..+....-++.+-+|+.
T Consensus       228 Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr  306 (479)
T KOG0299|consen  228 IWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGR  306 (479)
T ss_pred             EecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccc
Confidence            999999885 6778999999999999988889999999999999999887666544 89999999998888888889999


Q ss_pred             CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743          143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (633)
Q Consensus       143 DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~  219 (633)
                      |+++++|++....+  .++.  +|.+.+-|++|-             ++..+++|+.+|.|.+|++....|.-....
T Consensus       307 DrT~rlwKi~eesq--lifr--g~~~sidcv~~I-------------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  307 DRTVRLWKIPEESQ--LIFR--GGEGSIDCVAFI-------------NDEHFVSGSDNGSIALWSLLKKKPLFTSRL  366 (479)
T ss_pred             cceeEEEeccccce--eeee--CCCCCeeeEEEe-------------cccceeeccCCceEEEeeecccCceeEeec
Confidence            99999999965432  2333  788899999986             456788899999999999987777554433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.67  E-value=1.6e-14  Score=146.86  Aligned_cols=188  Identities=13%  Similarity=0.105  Sum_probs=141.3

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt   85 (633)
                      ++.+++++.|+.|++||+.+++.+..+..+ . .+..++|+|+++.+++++..++.|++||..+.+. ...+..+. .+.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~   76 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-Q-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPE   76 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECC-C-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-Ccc
Confidence            457889999999999999999988888753 2 2466899999985557778899999999988763 33444443 357


Q ss_pred             EEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCCCceEEEee
Q 006743           86 GISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGKPQPLTVLRA  163 (633)
Q Consensus        86 sLafSPdg~~LaSg-S~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG-sV~IWDlrs~~k~v~~l~~  163 (633)
                      .++|+|+++.++++ ..|+.|++||+++.+.+..+.....+.+++|+|+|.+++++..++ .+++||.++... ..... 
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-
Confidence            88999998877654 568999999999988777776566678999999999999988775 577889887632 22221 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                        ....+.+++|++++++++           +++..++.|++||+....
T Consensus       155 --~~~~~~~~~~s~dg~~l~-----------~~~~~~~~v~i~d~~~~~  190 (300)
T TIGR03866       155 --VDQRPRFAEFTADGKELW-----------VSSEIGGTVSVIDVATRK  190 (300)
T ss_pred             --cCCCccEEEECCCCCEEE-----------EEcCCCCEEEEEEcCcce
Confidence              234467789988755443           334458899999997543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.67  E-value=1.5e-15  Score=155.00  Aligned_cols=163  Identities=21%  Similarity=0.307  Sum_probs=133.3

Q ss_pred             EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 006743           30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY  108 (633)
Q Consensus        30 ~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~-~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIW  108 (633)
                      .++.....+.|.+|+|+|....+++++++|++|++|++... ...-+....|.++|.+++|+.||..+++|+.|+.+++|
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            34555667889999999976668889999999999999763 33334567899999999999999999999999999999


Q ss_pred             eCCCCceeeEeeCCCCeEEEEEecCCC--EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006743          109 DPGSRRPSSCITYEAPFSSLAFIDDDW--ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (633)
Q Consensus       109 Dlrtgk~v~~i~h~~~ItsLafSPdG~--~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s  186 (633)
                      |+.+++....-.|.++|.++.|-+...  .|++|+.|.+|++||+|.. .++..+.   -.+.++++..-          
T Consensus       100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~---LPeRvYa~Dv~----------  165 (347)
T KOG0647|consen  100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ---LPERVYAADVL----------  165 (347)
T ss_pred             EccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee---ccceeeehhcc----------
Confidence            999998888878999999999998665  8999999999999999976 5555555   34566666542          


Q ss_pred             cCCCCeEEEEeeCCCeEEccCCCC
Q 006743          187 TCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       187 ~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                          ..+++.+..++.|.+|.+..
T Consensus       166 ----~pm~vVata~r~i~vynL~n  185 (347)
T KOG0647|consen  166 ----YPMAVVATAERHIAVYNLEN  185 (347)
T ss_pred             ----CceeEEEecCCcEEEEEcCC
Confidence                33455556699999999854

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.3e-16  Score=184.43  Aligned_cols=196  Identities=20%  Similarity=0.303  Sum_probs=155.4

Q ss_pred             CccCCCCE----EEEEECCCcEEEEECCC---Cc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            1 MYNCKDEH----LASISLSGDLILHNLAS---GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         1 AFSpdG~~----LaSgs~DG~I~IWDl~t---gk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      +|.+.|..    ||.|..||.|.+||...   +.   .+..+.. |.+.|..+.|++...++|++|+.||.|.|||+.+.
T Consensus        71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~  149 (1049)
T KOG0307|consen   71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP  149 (1049)
T ss_pred             eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence            46666665    78888999999999865   22   2333443 66778889999999889999999999999999875


Q ss_pred             CceeEE-eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---CCeEEEEEecCC-CEEEEEEcCC
Q 006743           71 SPKVSW-LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDD-WILTAGTSNG  144 (633)
Q Consensus        71 ~~~v~~-l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---~~ItsLafSPdG-~~LatGs~DG  144 (633)
                      +..... -..-...|.+++|+. ....|++++.+|.+.|||+|..+++..+...   ..+..++|+|++ ..|++++.|.
T Consensus       150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd  229 (1049)
T KOG0307|consen  150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD  229 (1049)
T ss_pred             CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence            533221 122457899999998 6678899999999999999998877666432   348899999976 4566666653


Q ss_pred             ---eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          145 ---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       145 ---sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                         .|.+||+|....+++++.  +|...|.++.|++.           |..++++++.|+.|.+|+...
T Consensus       230 ~~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~-----------D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  230 SAPVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQ-----------DPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             CCceeEeecccccCCchhhhc--ccccceeeeccCCC-----------CchhhhcccCCCCeeEecCCC
Confidence               499999999888888886  89999999999985           667788888899999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.6e-14  Score=142.50  Aligned_cols=191  Identities=16%  Similarity=0.252  Sum_probs=146.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce-----eEEEeCCCCCcEEEEEEcc----------------------------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSR----------------------------   47 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~-----v~~~~~~~~~~VssLafSp----------------------------   47 (633)
                      +|+|+|++|++|++|..|++.-.+...+     -.++.- |...|+.++|..                            
T Consensus        96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~  174 (350)
T KOG0641|consen   96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ  174 (350)
T ss_pred             EecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence            6999999999999999998875532111     011211 333344444422                            


Q ss_pred             ------------------CCCeEEEEEeCCCeEEEEECCCCCceeEEec--cC-----CCCeEEEEEcCCCCEEEEEeCC
Q 006743           48 ------------------NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--QH-----SAPTAGISFSSDDKIIASVGLD  102 (633)
Q Consensus        48 ------------------dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--~H-----~~~VtsLafSPdg~~LaSgS~D  102 (633)
                                        ++- .|++|+.|.+|++||++-..+ +..+.  -|     ...|.+++..|.|++|++|-.|
T Consensus       175 ~~~a~sghtghilalyswn~~-m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d  252 (350)
T KOG0641|consen  175 GFHALSGHTGHILALYSWNGA-MFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD  252 (350)
T ss_pred             cceeecCCcccEEEEEEecCc-EEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence                              222 688899999999999986664 33332  12     2579999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---CCceEEEeecCCCCCeeEEEEccC
Q 006743          103 KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQPLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       103 GtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~---~k~v~~l~~~~H~~~VtsLafsPd  178 (633)
                      ..+.+||++.+++++.+ .|...|.|+.|+|...|+++++.|..|++-|+...   +.++.++.  .|...+..+.|+| 
T Consensus       253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~-  329 (350)
T KOG0641|consen  253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHP-  329 (350)
T ss_pred             CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecC-
Confidence            99999999999999877 79999999999999999999999999999999853   22333333  6888899999998 


Q ss_pred             CCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          179 KPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       179 g~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                                 .+.-+++.+.|+++.+|-+
T Consensus       330 -----------~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  330 -----------QDFSFISSSADKTATLWAL  348 (350)
T ss_pred             -----------ccceeeeccCcceEEEecc
Confidence                       4566777888999999965

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.65  E-value=3.7e-14  Score=144.20  Aligned_cols=195  Identities=13%  Similarity=0.125  Sum_probs=139.6

Q ss_pred             CccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+|+|+.+ ++++.++.|++||..+++.+..+..+. . +..++|+|+++.+++++..|+.|++||+.+... +..+. 
T Consensus        37 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-  112 (300)
T TIGR03866        37 TLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-D-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-  112 (300)
T ss_pred             EECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-
Confidence            478999977 566788999999999888877766432 2 356899999985556667789999999987653 33333 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCc
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQP  157 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DG-tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k~  157 (633)
                      +...+.+++|+|++.+++++..++ .+++||.++++....+.....+.+++|+|++++|++++ .++.|++||+++.+ .
T Consensus       113 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~  191 (300)
T TIGR03866       113 VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-V  191 (300)
T ss_pred             CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-e
Confidence            334578899999999999988775 57788999887766555555678899999999886554 68999999999863 3


Q ss_pred             eEEEeecC---C--CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          158 LTVLRACS---S--SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       158 v~~l~~~~---H--~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +..+....   +  ......++|+|++++++           ++...++.+.+||+...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~-----------~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAF-----------VALGPANRVAVVDAKTY  239 (300)
T ss_pred             eeeeeecccccccccCCccceEECCCCCEEE-----------EEcCCCCeEEEEECCCC
Confidence            33332111   1  11234678888766533           22344667899988643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.8e-15  Score=152.92  Aligned_cols=193  Identities=13%  Similarity=0.146  Sum_probs=150.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-----ee-EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA-----KA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---   71 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-----~v-~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---   71 (633)
                      +|+.||++|++++.|+.|+||++.+-.     .+ ..+..   +--+.+.|.||-+.+++++....++++|.+...+   
T Consensus        93 ~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~---dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~  169 (420)
T KOG2096|consen   93 AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY---DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS  169 (420)
T ss_pred             EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC---CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC
Confidence            589999999999999999999997632     11 11221   2335589999998888888888899999874322   


Q ss_pred             ce--------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEc
Q 006743           72 PK--------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        72 ~~--------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~  142 (633)
                      ..        .+.-+.|...|..+-....+.+|++++.|..|.+||++ |+.+..+. ....-+..+.+|+|++|++++.
T Consensus       170 ~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gF  248 (420)
T KOG2096|consen  170 GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF  248 (420)
T ss_pred             CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecC
Confidence            11        12334577778888888889999999999999999999 78777773 4556677889999999999999


Q ss_pred             CCeEEEEECCCC-----CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          143 NGRVVFYDIRGK-----PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       143 DGsV~IWDlrs~-----~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .--|++|.+--.     +...+.+...+|...|..++|++            +...+++.+.||+++|||..
T Consensus       249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn------------~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN------------SSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC------------CcceeEEEecCCcEEEeecc
Confidence            999999987422     23345556669999999999998            45667777899999999865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=6.2e-15  Score=167.28  Aligned_cols=191  Identities=20%  Similarity=0.251  Sum_probs=155.9

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~   82 (633)
                      ..++.+|++|+.+++|.+|....++.-..+.. ..-.+++++|+.+|. +++.|++|-.|++-+...... ...+++|.+
T Consensus        63 a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~R-ftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~-~~~lrgh~a  139 (933)
T KOG1274|consen   63 ACYSNHFLTGSEQNTVLRYKFPSGEEDTILAR-FTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDA  139 (933)
T ss_pred             eecccceEEeeccceEEEeeCCCCCccceeee-eeccceEEEEecCCc-EEEeecCceeEEEEeccccch-heeecccCC
Confidence            45677999999999999999987764322221 235688999999998 899999999999999977663 678899999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      +|.++.|+|++++||+.+.||.|++||+.++.+...+.         ....+..++|+|+|..+++...|+.|++|+..+
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence            99999999999999999999999999999988766552         134467899999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .... ..+....+...+.++.|+|+|+||+++            ..|+.|.|||+.
T Consensus       220 we~~-f~Lr~~~~ss~~~~~~wsPnG~YiAAs------------~~~g~I~vWnv~  262 (933)
T KOG1274|consen  220 WELQ-FKLRDKLSSSKFSDLQWSPNGKYIAAS------------TLDGQILVWNVD  262 (933)
T ss_pred             ceeh-eeecccccccceEEEEEcCCCcEEeee------------ccCCcEEEEecc
Confidence            7543 334433455559999999977777665            668888899887

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=4.7e-15  Score=151.95  Aligned_cols=194  Identities=18%  Similarity=0.271  Sum_probs=161.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |-..|+.+++++.|.+..+||+++++.+..+.+ |...++.++-+|..+ ++++.+.|-+.++||.+..-..+..+.+|.
T Consensus       280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHt  357 (481)
T KOG0300|consen  280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHT  357 (481)
T ss_pred             hhcCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccc
Confidence            334688999999999999999999999999988 555566667788876 899999999999999997766788899999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-k~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..|+++.|+.+ ..+++|++|.+|++||+++. .++..+....+++.++.+..+.+|+.-..+..|++||++.... .+.
T Consensus       358 dtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRl  435 (481)
T KOG0300|consen  358 DTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARL  435 (481)
T ss_pred             cceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccC
Confidence            99999999964 56899999999999999985 4677888899999999999889999999999999999987521 111


Q ss_pred             E--eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          161 L--RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       161 l--~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      -  ...+|..-|+|++|..+..          -..|++++-|+.+.=|.+.
T Consensus       436 PrtsRqgHrRMV~c~AW~eehp----------~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  436 PRTSRQGHRRMVTCCAWLEEHP----------ACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             CcccccccceeeeeeeccccCc----------ccccccccccceeeeeEec
Confidence            1  2238999999999986422          2347788889999999774

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=2.8e-14  Score=146.09  Aligned_cols=199  Identities=12%  Similarity=0.211  Sum_probs=149.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCC---
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRS---   71 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~~---   71 (633)
                      .|++.|+++|+|+.|++|+|||..+..    +....+.|... |..|.|.+  .|+ ++++++.|+++.||.-....   
T Consensus        20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~S-i~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~~~~~   97 (361)
T KOG2445|consen   20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGS-IWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEKSEEA   97 (361)
T ss_pred             eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCc-EEEEEecCccccc-eEEEEecCCceeeeeeccccccc
Confidence            478899999999999999999975433    44455654444 55578864  355 99999999999999862111   


Q ss_pred             -----ceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC------ceeeEee--------CCCCeEEEEE
Q 006743           72 -----PKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR------RPSSCIT--------YEAPFSSLAF  130 (633)
Q Consensus        72 -----~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtg------k~v~~i~--------h~~~ItsLaf  130 (633)
                           .....+......|++++|.|  -|-.+++++.||.||||+.-..      .....+.        +..+..|+.|
T Consensus        98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW  177 (361)
T KOG2445|consen   98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW  177 (361)
T ss_pred             ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence                 11445667788999999999  6889999999999999986432      2222222        6677899999


Q ss_pred             ecC---CCEEEEEEcC-----CeEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743          131 IDD---DWILTAGTSN-----GRVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (633)
Q Consensus       131 SPd---G~~LatGs~D-----GsV~IWDlrs~~-k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg  201 (633)
                      +|.   ..+||+|+.+     +.++||...... +..++-...+|..+|+.|+|.|+        ......+++.++.||
T Consensus       178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn--------~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN--------IGRSYHLLAVATKDG  249 (361)
T ss_pred             ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc--------cCCceeeEEEeecCc
Confidence            984   5678888776     579999876644 44455555689999999999996        344566778888898


Q ss_pred             eEEccCCCC
Q 006743          202 SILMPDPLP  210 (633)
Q Consensus       202 ~IkIWDlr~  210 (633)
                       |+||.++.
T Consensus       250 -v~I~~v~~  257 (361)
T KOG2445|consen  250 -VRIFKVKV  257 (361)
T ss_pred             -EEEEEEee
Confidence             99998864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.62  E-value=7.9e-15  Score=153.96  Aligned_cols=169  Identities=13%  Similarity=0.176  Sum_probs=136.2

Q ss_pred             CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEE
Q 006743           34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLY  106 (633)
Q Consensus        34 ~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~------~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVr  106 (633)
                      +.|...|..++|+|.+++.|++|++|.+|.||++..+.      ..+..+.+|...|.-++|+| ..+.|++++.|.+|.
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~  157 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS  157 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence            34777888899999999999999999999999995432      33678899999999999999 788999999999999


Q ss_pred             EEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEe
Q 006743          107 TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDE  185 (633)
Q Consensus       107 IWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~-VtsLafsPdg~~Las~  185 (633)
                      +||+.+++.+..+.|.+-|+++.|+.||.+|++.+.|..|+|||.++++ ++..-  .+|.+. -..+.|-.+|.++.++
T Consensus       158 iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~--~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  158 IWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEG--VAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-Eeeec--ccccCCCcceeEEeccCceeeec
Confidence            9999999998888999999999999999999999999999999999984 33333  356543 3344555555533332


Q ss_pred             ccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          186 TTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       186 s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                               ++--.++.+-+||......+
T Consensus       235 ---------fsr~seRq~aLwdp~nl~eP  254 (472)
T KOG0303|consen  235 ---------FSRMSERQIALWDPNNLEEP  254 (472)
T ss_pred             ---------cccccccceeccCcccccCc
Confidence                     12234889999998765543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=6e-15  Score=147.05  Aligned_cols=190  Identities=14%  Similarity=0.169  Sum_probs=144.8

Q ss_pred             CCCEEEEEECCCcEEEEECCCCcee--EEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCC--CceeEEecc
Q 006743            5 KDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGR--SPKVSWLKQ   79 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v--~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t~--~~~v~~l~~   79 (633)
                      .|..||+++.||+|.||.-+.++-.  .+... |...|++|+|.|.+- .+|++++.||.|.|.+.+..  -...+....
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a  147 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA  147 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCCchhhhhhhhh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence            5889999999999999998777432  23333 677889999998752 37888999999999998654  122345678


Q ss_pred             CCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEeCCCCcee--eEe-eCCCCeEEEEEecC----CCEEE
Q 006743           80 HSAPTAGISFSSD---D-----------KIIASVGLDKKLYTYDPGSRRPS--SCI-TYEAPFSSLAFIDD----DWILT  138 (633)
Q Consensus        80 H~~~VtsLafSPd---g-----------~~LaSgS~DGtVrIWDlrtgk~v--~~i-~h~~~ItsLafSPd----G~~La  138 (633)
                      |.-.|++++|.|.   |           +.|++|+.|+.|+||+...++-+  ..+ +|.+.|+.++|.|.    -.+|+
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            9999999999984   4           67999999999999999886432  223 69999999999995    36899


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +++.||+|.||..+....+.+.--.......+..+.|+..|.+|+..            +.|+.|.+|.
T Consensus       228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs------------~GdNkvtlwk  284 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVS------------GGDNKVTLWK  284 (299)
T ss_pred             EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEe------------cCCcEEEEEE
Confidence            99999999999887532222221112356789999999977666554            4477777773

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=4.1e-14  Score=145.39  Aligned_cols=175  Identities=18%  Similarity=0.231  Sum_probs=136.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEec--
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLK--   78 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~l~--   78 (633)
                      .+|-++.+++++.|++|++||++..++...+... ..  .+++|.|.|- ++|++.....|+|||++.-. .+-..+.  
T Consensus       108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~--pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~  183 (311)
T KOG1446|consen  108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GR--PIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSIT  183 (311)
T ss_pred             ecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CC--cceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccC
Confidence            4678899999999999999999877766655432 22  3468999997 78888877799999997542 1222222  


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCC---CeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           79 -QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEA---PFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        79 -~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~---~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                       .-....+.|.|+|||++|+.+...+.+++.|.-+|.....+. +..   -....+|.||+++|++|..||+|++|++++
T Consensus       184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence             345788999999999999999999999999999998777663 221   235788999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeE
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~L  182 (633)
                      +. .+..+... +.+++.++.|+|.-..+
T Consensus       264 g~-~v~~~~~~-~~~~~~~~~fnP~~~mf  290 (311)
T KOG1446|consen  264 GK-KVAVLRGP-NGGPVSCVRFNPRYAMF  290 (311)
T ss_pred             Cc-EeeEecCC-CCCCccccccCCceeee
Confidence            84 44445532 78999999999953333

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.3e-14  Score=148.91  Aligned_cols=204  Identities=17%  Similarity=0.200  Sum_probs=147.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--   78 (633)
                      .|++.|.+||+|+.||.|.|||+.+....+.+.+ |-.+|++++|+++|+ +|++++.|..|.+||+..+.+..+...  
T Consensus        30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rirf~s  107 (405)
T KOG1273|consen   30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIRFDS  107 (405)
T ss_pred             EeccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEEccC
Confidence            3899999999999999999999988876666654 778899999999998 899999999999999977664311100  


Q ss_pred             ------cC---------------------C----------------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743           79 ------QH---------------------S----------------APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (633)
Q Consensus        79 ------~H---------------------~----------------~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~  115 (633)
                            -|                     .                ....+..|.+.|++|++|...|.+.+||..+-++
T Consensus       108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~  187 (405)
T KOG1273|consen  108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC  187 (405)
T ss_pred             ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence                  00                     0                0011223666789999999999999999999988


Q ss_pred             eeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC--------CceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          116 SSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP--------QPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       116 v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~--------k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +..+.  ....|..+.++..|+.|+.-+.|+.|+.|+++.-.        .+...+........-.+++|+.+|.|++++
T Consensus       188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~  267 (405)
T KOG1273|consen  188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG  267 (405)
T ss_pred             eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence            87764  33689999999999999999999999999987321        111111212233445678888888888776


Q ss_pred             ccCCCCeEEEEeeCCCeEEcc
Q 006743          186 TTCKAETALLGGAVGDSILMP  206 (633)
Q Consensus       186 s~~sd~~lLlSgs~Dg~IkIW  206 (633)
                      +......|++-.+....|||-
T Consensus       268 s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  268 SARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             cccceeEEEEecCCcceeeee
Confidence            544444444444444444443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.61  E-value=2.5e-14  Score=150.21  Aligned_cols=198  Identities=19%  Similarity=0.262  Sum_probs=155.6

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            1 MYNCK-DEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         1 AFSpd-G~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      +|+|- ++.||+|+.|.+|.||++..+.       .+..+.+ |...|-.|+|+|...++|++++.|.+|.||++.+++.
T Consensus        88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea  166 (472)
T KOG0303|consen   88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA  166 (472)
T ss_pred             ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEEeccCCce
Confidence            36664 5688999999999999987643       4566766 6667888999999999999999999999999999986


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCC-CeEEEEEecCCCEEEEEE---cCCeEE
Q 006743           73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEA-PFSSLAFIDDDWILTAGT---SNGRVV  147 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~-~ItsLafSPdG~~LatGs---~DGsV~  147 (633)
                      .+ .+. |...|+++.|+.||.+|++.+.|+.|+|||.++++.+..- .|.+ .-..+.|-.+|.++.+|.   .+..+-
T Consensus       167 li-~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~a  244 (472)
T KOG0303|consen  167 LI-TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIA  244 (472)
T ss_pred             ee-ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccccccccee
Confidence            44 344 9999999999999999999999999999999999998776 5544 355667778888555554   367899


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +||..+...++.... ......|.---|++           +...++++|-.|+.|+.|++....|
T Consensus       245 Lwdp~nl~eP~~~~e-lDtSnGvl~PFyD~-----------dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  245 LWDPNNLEEPIALQE-LDTSNGVLLPFYDP-----------DTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ccCcccccCcceeEE-eccCCceEEeeecC-----------CCCEEEEEecCCcceEEEEecCCCc
Confidence            999998877754433 23344444444444           3666778888899999999976655

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.61  E-value=7.7e-15  Score=162.46  Aligned_cols=179  Identities=14%  Similarity=0.208  Sum_probs=148.2

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      ++..|++|+.|..|.+|.+....+...+++ |...|+++....++.  +++|++|.+++||......   ..+.+|...|
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~---~~l~gH~asV  143 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELV---YSLQGHTASV  143 (745)
T ss_pred             cCcceEeecccceEEEEecCCCCchhhhhc-cccceeeeecCCcCc--eEecccccceEEecchhhh---cccCCcchhe
Confidence            445688999999999999999999999987 566677787766664  8999999999999886543   4589999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~  163 (633)
                      ++++.-|+. .+++|+.|++||+|.-  ++.++++ +|.+.|+.+++-+++ .+++++.||.|++|++...    ..+..
T Consensus       144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge----~l~~~  215 (745)
T KOG0301|consen  144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE----VLLEM  215 (745)
T ss_pred             eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc----eeeee
Confidence            999999877 8999999999999986  5666666 699999999999875 4678999999999999554    44555


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ++|..-|+++....+            ...+++++.|++++||+..
T Consensus       216 ~ghtn~vYsis~~~~------------~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  216 HGHTNFVYSISMALS------------DGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             eccceEEEEEEecCC------------CCeEEEecCCceEEEeecC
Confidence            699999999996553            4455666778999999775

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.60  E-value=1.8e-14  Score=162.12  Aligned_cols=178  Identities=17%  Similarity=0.217  Sum_probs=152.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEe--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~--~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      .++.|++.+.|...|.|-+||+++|-....|-  ..|+..|+.++...-++ .+++++.+|-+++||..+... ...+. 
T Consensus       456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l-~~~l~-  532 (910)
T KOG1539|consen  456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVL-KKSLR-  532 (910)
T ss_pred             EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcce-eeeec-
Confidence            46789999999999999999999998888882  34778889899887776 899999999999999988763 33333 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      -...+.++..+.....++.+..|-.|+++|+.+.+.++.+ +|.+.|++++|+|||++|++++.|++|++||+.++    
T Consensus       533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~----  608 (910)
T KOG1539|consen  533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG----  608 (910)
T ss_pred             cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----
Confidence            3456888888888889999999999999999999999888 69999999999999999999999999999999998    


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEec
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDET  186 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s  186 (633)
                      ..+....-..+++++.|+|+|.+|++..
T Consensus       609 ~lID~~~vd~~~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  609 TLIDGLLVDSPCTSLSFSPNGDFLATVH  636 (910)
T ss_pred             ceeeeEecCCcceeeEECCCCCEEEEEE
Confidence            3344444678999999999888887763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.59  E-value=3.2e-14  Score=156.38  Aligned_cols=234  Identities=18%  Similarity=0.204  Sum_probs=155.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCcee---E--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 006743            6 DEHLASISLSGDLILHNLASGAKA---A--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ   79 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v---~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~   79 (633)
                      ...|+.+..||.|.++|.....-.   +  .....|...|.++.|.| ++..|++++.|.++++||+.+.... ...+.+
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc
Confidence            357889999999999998643221   1  12224778888999999 5569999999999999999877743 234789


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc--------------------eeeE--------eeCCCCeEE---
Q 006743           80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR--------------------PSSC--------ITYEAPFSS---  127 (633)
Q Consensus        80 H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk--------------------~v~~--------i~h~~~Its---  127 (633)
                      |.+.|.++||.| +...|++|+.||.|.|||++-..                    +...        ..+...|.+   
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT  222 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT  222 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence            999999999999 88899999999999999986322                    0000        012333444   


Q ss_pred             EEEecCCCEEEEEEc-CCeEEEEECCCCCCc-----eEEEeecCC---CCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743          128 LAFIDDDWILTAGTS-NGRVVFYDIRGKPQP-----LTVLRACSS---SEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (633)
Q Consensus       128 LafSPdG~~LatGs~-DGsV~IWDlrs~~k~-----v~~l~~~~H---~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs  198 (633)
                      +.+..|...||+++. |+.|+|||++.....     ........|   .-.+.++..+.            .+.+|+..+
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs------------sGt~L~AsC  290 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS------------SGTYLFASC  290 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC------------CCCeEEEEe
Confidence            555668888888777 999999999975432     222222223   22344555443            334444455


Q ss_pred             CCCeEEccCCCCCCC----------CCcccccccccCCCCCCccCCCCCCCccccCCCCCCCCc
Q 006743          199 VGDSILMPDPLPSVT----------TSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQ  252 (633)
Q Consensus       199 ~Dg~IkIWDlr~~~~----------~ss~s~s~a~sss~sslt~~ssG~~ssi~~~st~e~tP~  252 (633)
                      .|+.|++|+++....          ..+.......+.....+...+....+-++.....+..|.
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence            699999999975432          112222222333444455555555556677777777665

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=1.6e-14  Score=156.21  Aligned_cols=171  Identities=18%  Similarity=0.200  Sum_probs=133.0

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEe---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---------   71 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~---~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---------   71 (633)
                      +++--|+.|-.-|.|.+.|....+..+.+.   .-....|+|++|-|.++.+|+.+-.+|.+++||.....         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            345567778888899988875532211111   12357789999999988899999999999999863211         


Q ss_pred             ------------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEec
Q 006743           72 ------------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID  132 (633)
Q Consensus        72 ------------------~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSP  132 (633)
                                        .++..+.-..+.|+.++|+|||++||+++.||.+||||..+.+.+..+ .+-+...|++|+|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence                              001122223457899999999999999999999999999988877666 4778999999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       133 dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      ||+||++|++|..|.||.+...+   .+-+..+|..+|..|+|+|
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecc
Confidence            99999999999999999998763   3345569999999999996

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.59  E-value=1.6e-14  Score=154.78  Aligned_cols=189  Identities=15%  Similarity=0.220  Sum_probs=149.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-CCCe
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-SAPT   84 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H-~~~V   84 (633)
                      ..|+++|+..+.|+|||++...+.+.+++ |...|++|.|+-.+. +|++++..|.|.|..+.++.. ...+... ...|
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkd-h~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsv  167 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAKLIHRFLKD-HQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSV  167 (673)
T ss_pred             ceeeeccCcCceeeehhhHHHHHhhhccC-CcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcc-ccceecCCCCeE
Confidence            35889999999999999985545555665 668899999998877 899999999999999988763 2333322 4556


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        85 tsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      .-+.|+| ...+|.+++++|.|.+||+....++..+  .|..++..+||+|. ..+|++.+.|.+|++||.+... ....
T Consensus       168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~  246 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDR  246 (673)
T ss_pred             EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-ccce
Confidence            7899999 5556788999999999999988777665  59999999999995 5677889999999999999763 2233


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +   ....+...++|.++|-+            |+.|...|.|..||+|....
T Consensus       247 l---~y~~Plstvaf~~~G~~------------L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  247 L---TYSHPLSTVAFSECGTY------------LCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             e---eecCCcceeeecCCceE------------EEeecCCceEEEEecccCCC
Confidence            3   35678999999985544            44556689999999996543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=4e-14  Score=160.84  Aligned_cols=173  Identities=16%  Similarity=0.251  Sum_probs=144.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~-   79 (633)
                      +|+-+|+++|.|+.|-.|++-++.+......+++ |...|.+|.|+|++. +||+.+.||.|+|||+.++... .++.+ 
T Consensus       103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~-~tl~~v  179 (933)
T KOG1274|consen  103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILS-KTLTGV  179 (933)
T ss_pred             EEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhh-hhcccC
Confidence            4788999999999999999999999998888887 677888999999998 9999999999999999877632 22211 


Q ss_pred             -------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743           80 -------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (633)
Q Consensus        80 -------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IW  149 (633)
                             ....+..++|+|++..|+..+.|+.|++|+..++.....+.   +...+.+++|+|+|+|||+++.||.|.||
T Consensus       180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vW  259 (933)
T KOG1274|consen  180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVW  259 (933)
T ss_pred             CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEE
Confidence                   14566788999998899999999999999999988776662   44459999999999999999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~La  183 (633)
                      |.++...       +.....|+|++|.|+++.+-
T Consensus       260 nv~t~~~-------~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  260 NVDTHER-------HEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             ecccchh-------ccccceeEEEecCCCCCeeE
Confidence            9997421       23457899999999876553

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.58  E-value=3e-14  Score=146.91  Aligned_cols=190  Identities=18%  Similarity=0.266  Sum_probs=145.1

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--EeccCCCCe
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--WLKQHSAPT   84 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~--~l~~H~~~V   84 (633)
                      -++|+|+.-|.|+|.|+.+++....+.+ |+..|+.|++.|+..+++++++.|..|++|++++..+...  -+.+|.+.|
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            3788899999999999999999999986 7888999999999988999999999999999999886422  246899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------------------eeEe----eCC-------------
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRP-------------------------SSCI----TYE-------------  122 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~-------------------------v~~i----~h~-------------  122 (633)
                      .++.|++++.+|++++.|..|++|++...+.                         ...+    -|.             
T Consensus       185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~i  264 (385)
T KOG1034|consen  185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFI  264 (385)
T ss_pred             EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhhe
Confidence            9999999999999999999999999852110                         0000    011             


Q ss_pred             ------CC-----------------------------------eEE--EEEecCCCEEEEEEcCCeEEEEECCCCCCc-e
Q 006743          123 ------AP-----------------------------------FSS--LAFIDDDWILTAGTSNGRVVFYDIRGKPQP-L  158 (633)
Q Consensus       123 ------~~-----------------------------------Its--LafSPdG~~LatGs~DGsV~IWDlrs~~k~-v  158 (633)
                            +.                                   |.-  .+|+|.+++||.|...|.|++||+++.+.+ .
T Consensus       265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~  344 (385)
T KOG1034|consen  265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC  344 (385)
T ss_pred             eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence                  11                                   111  234555788999999999999999987542 2


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ..+........|...+|+.++.+            |+....|+.|.-||..
T Consensus       345 ttl~~s~~~~tVRQ~sfS~dgs~------------lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  345 TTLTHSKSGSTVRQTSFSRDGSI------------LVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ceEEeccccceeeeeeecccCcE------------EEEEeCCCcEEEEEee
Confidence            23332344567888898885544            4444669999999853

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.58  E-value=3.8e-15  Score=148.85  Aligned_cols=197  Identities=17%  Similarity=0.206  Sum_probs=164.2

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~   82 (633)
                      .|+|-+|+++++||.-.+-+-++|..+.+|.+ |+..|...+.+.+.. ..++++.|-+-+|||..++..  ..-..|..
T Consensus        26 tp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~-~aasaaadftakvw~a~tgde--lhsf~hkh  101 (334)
T KOG0278|consen   26 TPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNAT-RAASAAADFTAKVWDAVTGDE--LHSFEHKH  101 (334)
T ss_pred             CCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhh-hhhhhcccchhhhhhhhhhhh--hhhhhhhh
Confidence            57899999999999999999999999999998 555666667777765 688999999999999988774  23457889


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~-v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      .|..++|+.|.++|++|+.++.++|||++..+. ...+ +|.+.|..+.|....+.|++...|++|++||.+++. .+..
T Consensus       102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-~v~s  180 (334)
T KOG0278|consen  102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-EVQS  180 (334)
T ss_pred             eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-EEEE
Confidence            999999999999999999999999999986542 2333 799999999999999999999999999999999983 3444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCccccc
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLS  220 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s  220 (633)
                      +.   -..+|+++.++++|++|...             ..+.|++||...+....++..+
T Consensus       181 L~---~~s~VtSlEvs~dG~ilTia-------------~gssV~Fwdaksf~~lKs~k~P  224 (334)
T KOG0278|consen  181 LE---FNSPVTSLEVSQDGRILTIA-------------YGSSVKFWDAKSFGLLKSYKMP  224 (334)
T ss_pred             Ee---cCCCCcceeeccCCCEEEEe-------------cCceeEEeccccccceeeccCc
Confidence            44   56789999999988776554             4678999999988877666554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.58  E-value=2.7e-14  Score=145.42  Aligned_cols=166  Identities=17%  Similarity=0.257  Sum_probs=138.4

Q ss_pred             EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------------eEEeccCCCCeEEEEEcC-CCCEE
Q 006743           32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------------VSWLKQHSAPTAGISFSS-DDKII   96 (633)
Q Consensus        32 ~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--------------v~~l~~H~~~VtsLafSP-dg~~L   96 (633)
                      +...|++.|+.+...+....++++|+.||.|.|||++.....              ...-.+|.-.|..+.|-| |...|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            444578889999998876669999999999999999654311              112346788999999999 88899


Q ss_pred             EEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEE
Q 006743           97 ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSL  173 (633)
Q Consensus        97 aSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPd---G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsL  173 (633)
                      .+++.|.++++||..+-+....+..++.|++-+|+|-   -..||+|..|-.|++.|+..+. .-..+.  +|.+.|.++
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~Ls--GHr~~vlaV  194 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLS--GHRDGVLAV  194 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeec--cccCceEEE
Confidence            9999999999999999999999999999999999993   3467788888999999999883 445555  999999999


Q ss_pred             EEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       174 afsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      .|+|.           .+-+|++++.|+.|++||+|..
T Consensus       195 ~Wsp~-----------~e~vLatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  195 EWSPS-----------SEWVLATGSADGAIRLWDIRRA  221 (397)
T ss_pred             EeccC-----------ceeEEEecCCCceEEEEEeecc
Confidence            99996           4556778889999999999865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=8.1e-14  Score=148.76  Aligned_cols=191  Identities=17%  Similarity=0.216  Sum_probs=153.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC--CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEec
Q 006743            2 YNCKDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLK   78 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~t--gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-~v~~l~   78 (633)
                      |+|....|++|+.||.++||.+..  ...++.+.- ...+|.+.+|.|+|...+++++.....+.||+.+.+. ++..+.
T Consensus       221 FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~  299 (514)
T KOG2055|consen  221 FHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY  299 (514)
T ss_pred             ecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC
Confidence            889999999999999999999842  223444332 4678889999999987899999999999999987662 123334


Q ss_pred             cCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           79 QHS-APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        79 ~H~-~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      ++. ..+..+.+++++++|+..+..|.|.+....+++.+..+..++.|..++|+.|++.|++++.+|.|++||++.. .+
T Consensus       300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~  378 (514)
T KOG2055|consen  300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SC  378 (514)
T ss_pred             CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ce
Confidence            443 4578889999999999999999999999999999999999999999999999999999999999999999988 34


Q ss_pred             eEEEeecCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          158 LTVLRACSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       158 v~~l~~~~H~~~V--tsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +..+.   ..+.|  +++|.++++.            ++++|+..|.|.|||..
T Consensus       379 ~~rf~---D~G~v~gts~~~S~ng~------------ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  379 LHRFV---DDGSVHGTSLCISLNGS------------YLATGSDSGIVNIYDGN  417 (514)
T ss_pred             EEEEe---ecCccceeeeeecCCCc------------eEEeccCcceEEEeccc
Confidence            44444   34444  4555556544            55556778999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=4.7e-14  Score=146.11  Aligned_cols=195  Identities=17%  Similarity=0.256  Sum_probs=152.0

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCce-eEEeccCC-CC
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHS-AP   83 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~H~-~~   83 (633)
                      ..+|++...|.|++||..+++.+.++++ +...++.++|..+ +.+.+.+|+.||+|++||++..... +.....+. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            3588899999999999999999999987 5566777888764 6678999999999999999876533 33444555 46


Q ss_pred             eEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCce-eeEe--eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCC
Q 006743           84 TAGISFSSDDKIIASVGL----DKKLYTYDPGSRRP-SSCI--TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        84 VtsLafSPdg~~LaSgS~----DGtVrIWDlrtgk~-v~~i--~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      -.|++.+..++.+++|..    |-.|.+||+|..+. +..+  .|...|++++|+| +.++|++|+.||.|.|||++...
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            778888778888888863    56899999998765 5544  5999999999999 56899999999999999998764


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ..-..+....|...|.++.|..++           ...+++-+..+...+|++....+
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~-----------ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKK-----------YKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCC-----------cceEEEEEccCceeEEEccCCCh
Confidence            433444445688889999998753           22345556688899998865554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=3.3e-13  Score=149.49  Aligned_cols=194  Identities=16%  Similarity=0.296  Sum_probs=154.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      ||+.+.+.||++-.||.|.||++..+= ....+.++....|..++|++.++  |++.+-+|.|.-||+.+.+. ...+..
T Consensus        32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~-~~~~d~  108 (691)
T KOG2048|consen   32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQ-KYNIDS  108 (691)
T ss_pred             EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEEEecccCce-eEEecC
Confidence            688888999999999999999997643 44567777888999999997765  88999999999999998885 456677


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      ..+.|++++.+|.+..++.|++||.+++++...++.....   ..++.|.++.|+|++..|+.|+.||.|++||...+..
T Consensus       109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t  188 (691)
T KOG2048|consen  109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT  188 (691)
T ss_pred             CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence            8899999999999999999999998888888887765443   3568999999999999999999999999999998743


Q ss_pred             ceEEEee--cC----CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          157 PLTVLRA--CS----SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       157 ~v~~l~~--~~----H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      .. ....  ..    ...-|+++.|-.             ...+++|..-|.|++||....
T Consensus       189 ~~-~~~~~~d~l~k~~~~iVWSv~~Lr-------------d~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  189 LH-IITMQLDRLSKREPTIVWSVLFLR-------------DSTIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             EE-EeeecccccccCCceEEEEEEEee-------------cCcEEEecCCceEEEEcccCc
Confidence            22 1111  11    122245555443             235667777899999998643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.56  E-value=3.5e-14  Score=151.41  Aligned_cols=196  Identities=16%  Similarity=0.203  Sum_probs=150.8

Q ss_pred             CccCCCC--EEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-
Q 006743            1 MYNCKDE--HLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-   73 (633)
Q Consensus         1 AFSpdG~--~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-   73 (633)
                      +|+|..+  .+|+|...|.|-+||+.+.+    .+..+. .|...|.+|.|+|.+...+++.+.||+|++-|+++.... 
T Consensus       193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~  271 (498)
T KOG4328|consen  193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE  271 (498)
T ss_pred             EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence            4777654  78888999999999994222    233333 478889999999998878999999999999999876521 


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-Ee-eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEE
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-CI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYD  150 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-~i-~h~~~ItsLafSPd-G~~LatGs~DGsV~IWD  150 (633)
                      +..+......+..+.|+.+...++.+..=|...+||+|++.... .+ -|...|..|+++|. ..+|++++.|++++|||
T Consensus       272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD  351 (498)
T KOG4328|consen  272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD  351 (498)
T ss_pred             HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence            22233344567888888877777777777799999999876532 22 47779999999995 57889999999999999


Q ss_pred             CCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          151 IRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       151 lrs~~k~v-~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +|...... -.+....|...|.+..|+|.           ++. |++.+.|+.|+|||..
T Consensus       352 ~R~l~~K~sp~lst~~HrrsV~sAyFSPs-----------~gt-l~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  352 LRQLRGKASPFLSTLPHRRSVNSAYFSPS-----------GGT-LLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hhhhcCCCCcceecccccceeeeeEEcCC-----------CCc-eEeeccCCceEEeecc
Confidence            99742211 14666789999999999995           334 7777889999999984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=4.2e-14  Score=145.29  Aligned_cols=175  Identities=15%  Similarity=0.152  Sum_probs=136.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---CCC----ceeEEe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---GRS----PKVSWL   77 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~---t~~----~~v~~l   77 (633)
                      ++++|++++.|..|.+|++. |+.+..+.... ...+..+.+|+|+ ++++++---.|+||.+-   .+.    ..+..+
T Consensus       198 ~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L  274 (420)
T KOG2096|consen  198 NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-SSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL  274 (420)
T ss_pred             CceEEEEecCCCcEEEEecC-Cceeeeecccc-ccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence            46799999999999999997 88887776422 2334568999999 88888888999999972   221    125568


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeeEe-----eCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-------RRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt-------gk~v~~i-----~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                      ++|...|..++|+++...+++++.||++++||+.-       .+.+...     ...+....+.++|.|+.|+.... ..
T Consensus       275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~  353 (420)
T KOG2096|consen  275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SD  353 (420)
T ss_pred             ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-Cc
Confidence            99999999999999999999999999999999752       1222222     22344558999999999887765 56


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +++|..+.++.. ..+. ..|.+.|.+|+|+++|+++++|
T Consensus       354 l~~~~se~g~~~-~~~e-~~h~~~Is~is~~~~g~~~atc  391 (420)
T KOG2096|consen  354 LKVFASEDGKDY-PELE-DIHSTTISSISYSSDGKYIATC  391 (420)
T ss_pred             eEEEEcccCccc-hhHH-HhhcCceeeEEecCCCcEEeee
Confidence            999999886432 2222 2699999999999999999998

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.56  E-value=6.9e-14  Score=155.01  Aligned_cols=175  Identities=13%  Similarity=0.095  Sum_probs=139.8

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI   87 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsL   87 (633)
                      .+++|+.|.+++||-.  +++...+++ |...|.+++..|.+  .+++|+.|++|++|.-.+   .++++.+|...|+.+
T Consensus       114 ~~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~---~l~tf~gHtD~VRgL  185 (745)
T KOG0301|consen  114 TLISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTGSADKTIKLWKGGT---LLKTFSGHTDCVRGL  185 (745)
T ss_pred             ceEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEeccCcceeeeccCCc---hhhhhccchhheeee
Confidence            3899999999999975  455555665 77778889988886  599999999999998733   367899999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCC
Q 006743           88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS  167 (633)
Q Consensus        88 afSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~  167 (633)
                      ++-++ ..|++|+.||.|+.||+.........+|...|+++....++..|+++++|++++||+...   +...+.   |.
T Consensus       186 ~vl~~-~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e---~~q~I~---lP  258 (745)
T KOG0301|consen  186 AVLDD-SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE---CVQVIT---LP  258 (745)
T ss_pred             EEecC-CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc---eEEEEe---cC
Confidence            99954 468999999999999995444445558999999999888889999999999999999873   345555   33


Q ss_pred             -CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          168 -EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       168 -~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                       ..|+++++-++|..+             +|+.||.|+||-.++
T Consensus       259 ttsiWsa~~L~NgDIv-------------vg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  259 TTSIWSAKVLLNGDIV-------------VGGSDGRVRVFTVDK  289 (745)
T ss_pred             ccceEEEEEeeCCCEE-------------EeccCceEEEEEecc
Confidence             478888887755443             334489999986653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=8.7e-14  Score=142.86  Aligned_cols=157  Identities=18%  Similarity=0.248  Sum_probs=124.8

Q ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe
Q 006743           40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI  119 (633)
Q Consensus        40 VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i  119 (633)
                      ..|+.|++.|. +|+.|+.||.|.|||+.+.. ..+.+.+|..+|++++|+++|+.|++++.|..|++||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            56789999998 89999999999999999887 46788999999999999999999999999999999999988776665


Q ss_pred             eCCCCeEEEE-----------------------------------------------EecCCCEEEEEEcCCeEEEEECC
Q 006743          120 TYEAPFSSLA-----------------------------------------------FIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus       120 ~h~~~ItsLa-----------------------------------------------fSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ....+|..+.                                               |++.|++|++|...|.+.+||..
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            4443333322                                               44458899999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      +. +++..++. .....|..+.|+..|++++.            .+.|+.|+.|++....
T Consensus       184 t~-e~vas~ri-ts~~~IK~I~~s~~g~~lii------------NtsDRvIR~ye~~di~  229 (405)
T KOG1273|consen  184 TL-ECVASFRI-TSVQAIKQIIVSRKGRFLII------------NTSDRVIRTYEISDID  229 (405)
T ss_pred             hh-eeeeeeee-chheeeeEEEEeccCcEEEE------------ecCCceEEEEehhhhc
Confidence            87 34444442 12367888888876555444            4669999999987443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.55  E-value=4.7e-13  Score=137.56  Aligned_cols=167  Identities=12%  Similarity=0.174  Sum_probs=132.1

Q ss_pred             EEEEEECCCcEEEEECCCCc------------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            8 HLASISLSGDLILHNLASGA------------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk------------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      .|++|+....|.-+++.-..            .+..+. .|...+++|+.+  ++ ++++|+.|-+|+|||++.... ..
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~q-lg   77 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQ-LG   77 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ce-eEeccCCCCcEEEEeccchhh-hc
Confidence            47888888888888764211            122333 367788988876  45 899999999999999988774 56


Q ss_pred             EeccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           76 WLKQHSAPTAGISFSSDD--KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg--~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      .+..|.+.|+++.|.+.-  .+|++|+.||.|.+||.....++..+ +|.+.|+.++++|.|+.-++.+.|+.+++||+-
T Consensus        78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            678899999999999854  48999999999999999999888887 688999999999999999999999999999998


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 006743          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~La  183 (633)
                      .+... .++.   -...-+.+.|+|.|.+++
T Consensus       158 ~Gr~a-~v~~---L~~~at~v~w~~~Gd~F~  184 (362)
T KOG0294|consen  158 RGRVA-FVLN---LKNKATLVSWSPQGDHFV  184 (362)
T ss_pred             cCccc-eeec---cCCcceeeEEcCCCCEEE
Confidence            76432 2222   122334499999887554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.54  E-value=8e-14  Score=153.31  Aligned_cols=196  Identities=16%  Similarity=0.209  Sum_probs=139.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEE--EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------   73 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~--~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------   73 (633)
                      |-|....|++++.|.++++||++..+++..  +.+ |...|..+||.+.+...|++|+.||.|.|||++-....      
T Consensus       108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~  186 (720)
T KOG0321|consen  108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD  186 (720)
T ss_pred             cCCCceeEEEccCCceeeeeeeccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence            567455889999999999999999887765  655 67778889999999999999999999999998533200      


Q ss_pred             --------------------eEEeccCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEe---------e
Q 006743           74 --------------------VSWLKQHSAPTAG---ISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI---------T  120 (633)
Q Consensus        74 --------------------v~~l~~H~~~Vts---LafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i---------~  120 (633)
                                          +...+.+...|..   +.+..|...||+++. |+.|++||++........         .
T Consensus       187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t  266 (720)
T KOG0321|consen  187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT  266 (720)
T ss_pred             hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence                                1223345555555   555568889999888 999999999975443221         1


Q ss_pred             C---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743          121 Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG  196 (633)
Q Consensus       121 h---~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k-~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlS  196 (633)
                      +   ...+.++..+..|.+|++.+.|+.|++|++..... ++..+.  ++..  ..+       ++..+ ...++.++++
T Consensus       267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s--g~~~--~sf-------~vks~-lSpd~~~l~S  334 (720)
T KOG0321|consen  267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS--GKLN--SSF-------YVKSE-LSPDDCSLLS  334 (720)
T ss_pred             cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc--Cccc--cee-------eeeee-cCCCCceEec
Confidence            2   34578888888899999999999999999997532 222222  1111  000       11111 3346777788


Q ss_pred             eeCCCeEEccCCCC
Q 006743          197 GAVGDSILMPDPLP  210 (633)
Q Consensus       197 gs~Dg~IkIWDlr~  210 (633)
                      ++.|....+|.+..
T Consensus       335 gSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSS  348 (720)
T ss_pred             cCCCcceeeeeecC
Confidence            88899999998864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=9.6e-14  Score=148.17  Aligned_cols=182  Identities=16%  Similarity=0.276  Sum_probs=146.4

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDE-HLASISLSGDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|.|+|. .+++++....++.||+.+.+..+  ...+.....+.-...++++. +|+..+..|.|+|.-..+++. +..+
T Consensus       264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el-i~s~  341 (514)
T KOG2055|consen  264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL-ITSF  341 (514)
T ss_pred             eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh-hhee
Confidence            4889999 89999999999999998876543  23333445667778899998 899999999999998888774 3333


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCe--EEEEEecCCCEEEEEEcCCeEEEEECCC--
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPF--SSLAFIDDDWILTAGTSNGRVVFYDIRG--  153 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~I--tsLafSPdG~~LatGs~DGsV~IWDlrs--  153 (633)
                       .-.+.|..++|+.+++.|+.++.+|.|++||++...+++.+...+.|  +++|.++++.|||+|+..|.|.|||.++  
T Consensus       342 -KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  342 -KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF  420 (514)
T ss_pred             -eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence             34678999999999999999999999999999999999888666655  4677778999999999999999999764  


Q ss_pred             ---CCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743          154 ---KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (633)
Q Consensus       154 ---~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~  187 (633)
                         ..+|++.+.  .-...|+++.|+++.+.|+.|+.
T Consensus       421 ~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  421 ASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             ccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhh
Confidence               335555554  45677888899988888876643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.54  E-value=7.8e-14  Score=147.03  Aligned_cols=149  Identities=21%  Similarity=0.408  Sum_probs=121.4

Q ss_pred             CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 006743           34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL  105 (633)
Q Consensus        34 ~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--------~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtV  105 (633)
                      -|....+..+.|.++..+.|++|+.|..|+||.+.....        ....+..|...|+++.|+|+|.++++|+++|.|
T Consensus        10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV   89 (434)
T ss_pred             ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence            345677888999988777899999999999999843221        134577899999999999999999999999999


Q ss_pred             EEEeCC--------C-----C---ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC
Q 006743          106 YTYDPG--------S-----R---RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE  168 (633)
Q Consensus       106 rIWDlr--------t-----g---k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~  168 (633)
                      .+|-..        +     .   ...... .|...|+.++|+|++.++++++.|..+++||+..+ +....+.  +|..
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~--dh~~  166 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILD--DHEH  166 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecc--cccc
Confidence            999765        2     1   111112 58899999999999999999999999999999988 4445554  7999


Q ss_pred             CeeEEEEccCCCeEEEe
Q 006743          169 AVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~  185 (633)
                      .|..++|+|-++++++-
T Consensus       167 yvqgvawDpl~qyv~s~  183 (434)
T KOG1009|consen  167 YVQGVAWDPLNQYVASK  183 (434)
T ss_pred             ccceeecchhhhhhhhh
Confidence            99999999977777654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.54  E-value=4.6e-14  Score=151.49  Aligned_cols=188  Identities=12%  Similarity=0.096  Sum_probs=156.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +.+||.+..++++.||.|.|||+.+...++.|++ |.+.+.||.++++|. .|.+|+-|.+|+.||++.+....  -...
T Consensus       516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGt-klWTGGlDntvRcWDlregrqlq--qhdF  591 (705)
T KOG0639|consen  516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQ--QHDF  591 (705)
T ss_pred             hcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhhh--hhhh
Confidence            4689999999999999999999999999999998 666778999999998 79999999999999998876322  1234


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ...|.++..+|++.++++|-.++.|.+......+.....-|+..|.++.|.+.|+++++.+.|..+..|...-+..   +
T Consensus       592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas---i  668 (705)
T KOG0639|consen  592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---I  668 (705)
T ss_pred             hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc---e
Confidence            5789999999999999999999999999887766666667999999999999999999999999999999887643   2


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +.. .....|.++.++-            +..++++|+.|+.-.||.+
T Consensus       669 Fqs-kE~SsVlsCDIS~------------ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  669 FQS-KESSSVLSCDISF------------DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eec-cccCcceeeeecc------------CceEEEecCCCcceEEEEE
Confidence            221 3467788888776            4555666677777666654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.54  E-value=6.6e-14  Score=142.35  Aligned_cols=152  Identities=27%  Similarity=0.411  Sum_probs=129.1

Q ss_pred             CccC--CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNC--KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSp--dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+|  ||+.+++. .|+++..||+++.+....+...|...|+.+.|+|+.+++|++|++||.|+|||.+..+.++..+.
T Consensus       177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~  255 (370)
T KOG1007|consen  177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP  255 (370)
T ss_pred             ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence            4666  67777765 58999999999999999999889999999999999999999999999999999999888899999


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC------------------------------CceeeEeeCCCCeEE
Q 006743           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS------------------------------RRPSSCITYEAPFSS  127 (633)
Q Consensus        79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt------------------------------gk~v~~i~h~~~Its  127 (633)
                      +|...|+++.|+| ..++|++|+.|..|.+|....                              |.....-.|++.|++
T Consensus       256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~  335 (370)
T KOG1007|consen  256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA  335 (370)
T ss_pred             CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence            9999999999999 778999999999999996521                              111111248899999


Q ss_pred             EEEec-CCCEEEEEEcCCeEEEEECCC
Q 006743          128 LAFID-DDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus       128 LafSP-dG~~LatGs~DGsV~IWDlrs  153 (633)
                      ++|+. |..++|+-+.||+|.|=.+..
T Consensus       336 ~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  336 LAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EeeccCCCeeEEEeccCceEEeecCCh
Confidence            99997 566778889999999866543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.53  E-value=1.1e-13  Score=140.69  Aligned_cols=176  Identities=18%  Similarity=0.254  Sum_probs=136.1

Q ss_pred             cEEEEECCCCc---------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-----cCCC
Q 006743           17 DLILHNLASGA---------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-----QHSA   82 (633)
Q Consensus        17 ~I~IWDl~tgk---------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-----~H~~   82 (633)
                      .+.||.+....         ++..+...+-..|.||.|.|++. .+++.. |..|.+|++......+..+.     +|..
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~  171 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRH  171 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccccccccc
Confidence            47899886432         33334322334789999999987 555544 89999999977664333322     3455


Q ss_pred             CeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCc
Q 006743           83 PTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        83 ~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      ..++-+|+|  +++.+++.+ |+++..||+|+.+....+  .|...|..+.|+|+. .+|++|+.||.|+|||.|+.+.+
T Consensus       172 ~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p  250 (370)
T KOG1007|consen  172 SFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP  250 (370)
T ss_pred             eecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence            677889999  677766654 889999999998887777  588999999999975 56788999999999999998888


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +..+.  +|.-+|.++.|+|.           ...++++++.|..|.+|-.
T Consensus       251 v~el~--~HsHWvW~VRfn~~-----------hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  251 VQELP--GHSHWVWAVRFNPE-----------HDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             ccccC--CCceEEEEEEecCc-----------cceEEEecCCCceeEEEec
Confidence            88777  89999999999995           5667788888998888843

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=2e-13  Score=139.90  Aligned_cols=161  Identities=21%  Similarity=0.310  Sum_probs=129.8

Q ss_pred             EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 006743           31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP  110 (633)
Q Consensus        31 ~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl  110 (633)
                      ++.....+.|+.|.|+|.+. .|+++++||++++||+....  ......|..++.+++|.+ ...+++|+-||.|+.+|+
T Consensus         7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence            44555577899999998877 57777899999999998876  344567999999999985 678999999999999999


Q ss_pred             CCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          111 GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       111 rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                      .++.....-.|..+|.|+.+.+....+++|++|++|++||.|+. .....+   .....|.++...              
T Consensus        83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~---d~~kkVy~~~v~--------------  144 (323)
T KOG1036|consen   83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTF---DQGKKVYCMDVS--------------  144 (323)
T ss_pred             cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-cccccc---ccCceEEEEecc--------------
Confidence            99998888889999999999998889999999999999999974 222222   234467766643              


Q ss_pred             CeEEEEeeCCCeEEccCCCCCCC
Q 006743          191 ETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +..|+.|..|..|.+||+|....
T Consensus       145 g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  145 GNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             CCEEEEeecCceEEEEEcccccc
Confidence            33455556699999999996554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.53  E-value=9.7e-14  Score=141.29  Aligned_cols=188  Identities=22%  Similarity=0.277  Sum_probs=146.6

Q ss_pred             EEEEEECCCcEEEEECCC--Ccee--EEE----eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEe
Q 006743            8 HLASISLSGDLILHNLAS--GAKA--AEL----KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWL   77 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~t--gk~v--~~~----~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--~v~~l   77 (633)
                      +||+.  +..+++|.+..  .+..  ..+    ..++..+++...|+.-+.++|.+++-|-+..|||++.+..  ....+
T Consensus       115 lLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  115 LLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             hhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            45544  45799999863  2211  111    2234678889999988888999999999999999988632  35667


Q ss_pred             ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe---e-CCCCeEEEEEec-CCCEEEEEEcC-CeEEEEE
Q 006743           78 KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI---T-YEAPFSSLAFID-DDWILTAGTSN-GRVVFYD  150 (633)
Q Consensus        78 ~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i---~-h~~~ItsLafSP-dG~~LatGs~D-GsV~IWD  150 (633)
                      ..|..+|++++|.. .-+.|++++.||.||+||+|...-..++   . ...+...++|++ |-+++|+-..| ..|.|.|
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            89999999999998 4578999999999999999986554444   2 256788999998 45778875554 5699999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +|....++..++  +|.+.|.+|+|.|.           ....+.+++.|..+.|||+..
T Consensus       273 iR~P~tpva~L~--~H~a~VNgIaWaPh-----------S~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  273 IRVPCTPVARLR--NHQASVNGIAWAPH-----------SSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ecCCCcceehhh--cCcccccceEecCC-----------CCceeeecCCcceEEEEeccc
Confidence            999888887777  89999999999996           455667778899999999953

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.1e-13  Score=146.50  Aligned_cols=202  Identities=20%  Similarity=0.229  Sum_probs=149.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-cc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL-KQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l-~~   79 (633)
                      ||+.+|..|++|+.||.++||++.+...+..... |...|.++.|+||+. +|++-+.| ..+||+++++.+....- ..
T Consensus       151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             EEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence            5889999999999999999999888777776665 445689999999998 89999998 99999998885322211 23


Q ss_pred             CCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEeCCCCce------eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           80 HSAPTAGISFSSDD-----KIIASVGLDKKLYTYDPGSRRP------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        80 H~~~VtsLafSPdg-----~~LaSgS~DGtVrIWDlrtgk~------v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      .......+.|..|+     .+++....-+.|+.||+....-      ...+.....|.+++.++||++++.|+.||.|-|
T Consensus       228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai  307 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI  307 (398)
T ss_pred             cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence            34456667787755     2333333445677777653221      122234568999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      |+....+. +.... ..|...|+.+.|+|+.++++.. ..+.+..++.-..|..+++-.+
T Consensus       308 ~~~~~lq~-~~~vk-~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~~l~vd~~~~~~~~  364 (398)
T KOG0771|consen  308 YDAKSLQR-LQYVK-EAHLGFVTGLTFSPDSRYLASV-SSDNEAAVTKLAVDKTMQLHRL  364 (398)
T ss_pred             EEeceeee-eEeeh-hhheeeeeeEEEcCCcCccccc-ccCCceeEEEEeeccccccccc
Confidence            99988743 33332 3799999999999999998875 4456666676677777666544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=2.9e-14  Score=165.13  Aligned_cols=193  Identities=15%  Similarity=0.244  Sum_probs=146.4

Q ss_pred             ccCCCC-EEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      ||+... +||+|+.||.|.|||++..+.-..... ...+.|.+|.|+..-.++|++++.+|.+.|||++..+.. ..+..
T Consensus       124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-i~ls~  202 (1049)
T KOG0307|consen  124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-IKLSD  202 (1049)
T ss_pred             ccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-ccccc
Confidence            666654 999999999999999987554433321 134678999999998899999999999999999988754 44444


Q ss_pred             CCC--CeEEEEEcC-CCCEEEEEeCCC---eEEEEeCCC-CceeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEE
Q 006743           80 HSA--PTAGISFSS-DDKIIASVGLDK---KLYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYD  150 (633)
Q Consensus        80 H~~--~VtsLafSP-dg~~LaSgS~DG---tVrIWDlrt-gk~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~IWD  150 (633)
                      |..  .+..++|+| +...|+++++|.   .|.+||+|. ..+++++ .|...|.+|.|++.+ ++|++++.|+.|.+|+
T Consensus       203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN  282 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN  282 (1049)
T ss_pred             CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence            443  477899999 456677777665   799999986 3455665 799999999999955 8999999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .++++ .+..+.  ....++..+.|+|...-+++           ..+.||.|.|+.+.
T Consensus       283 ~~tgE-vl~~~p--~~~nW~fdv~w~pr~P~~~A-----------~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  283 PNTGE-VLGELP--AQGNWCFDVQWCPRNPSVMA-----------AASFDGKISIYSLQ  327 (1049)
T ss_pred             CCCce-EeeecC--CCCcceeeeeecCCCcchhh-----------hheeccceeeeeee
Confidence            99973 223332  46788999999997554333           33446666666553

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.52  E-value=2e-13  Score=151.29  Aligned_cols=203  Identities=20%  Similarity=0.272  Sum_probs=155.2

Q ss_pred             ccCCCCEEEEEECCC-----cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 006743            2 YNCKDEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---   73 (633)
Q Consensus         2 FSpdG~~LaSgs~DG-----~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~---   73 (633)
                      .+|+|+++|++++..     .|++|+..+...+..+.+ |.-.|+-++|+||++ +|++.+.|.++.+|........   
T Consensus       533 ~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~  610 (764)
T KOG1063|consen  533 ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFR  610 (764)
T ss_pred             ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhh
Confidence            478999999998764     489999988888888886 666778899999998 8999999999999998443321   


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceee---EeeCCCCeEEEEEecC-----CCEEEEEEcC
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSS---CITYEAPFSSLAFIDD-----DWILTAGTSN  143 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v~---~i~h~~~ItsLafSPd-----G~~LatGs~D  143 (633)
                      ....+.|...|.++.|+|++.+|++++.|++|++|.....  +.+.   .+.+...|++++|.|-     +..+++|-+.
T Consensus       611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~  690 (764)
T KOG1063|consen  611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK  690 (764)
T ss_pred             hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence            3447899999999999999999999999999999998876  3332   3368899999999882     4478899999


Q ss_pred             CeEEEEECCCCCC---------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          144 GRVVFYDIRGKPQ---------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       144 GsV~IWDlrs~~k---------~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      |.|.+|......+         +...-...+|.+.|+.+.|.|....--.  ...+...|..++.|..++++.+
T Consensus       691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~--~~~~~l~la~~g~D~~vri~nv  762 (764)
T KOG1063|consen  691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWV--EDKEWLNLAVGGDDESVRIFNV  762 (764)
T ss_pred             cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccc--cccceeEEeeecccceeEEeec
Confidence            9999998652111         1111123367888999999984211000  1123445677888999999876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.51  E-value=3.6e-12  Score=130.04  Aligned_cols=192  Identities=23%  Similarity=0.381  Sum_probs=147.6

Q ss_pred             cCCCC-EEEEEEC-CCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 006743            3 NCKDE-HLASISL-SGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         3 SpdG~-~LaSgs~-DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~-DGtI~IWDl~t~~~~v~~l~   78 (633)
                      ++++. +++..+. |+.+.+||... ......+.. |...|.+++|++++. +++.++. |+.+++|++.... .+..+.
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~  195 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK-PLSTLA  195 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc-eEEeec
Confidence            45566 4444444 89999999987 666666765 667788999999998 6777775 9999999998755 366777


Q ss_pred             cCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceee-Ee-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           79 QHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSS-CI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~-~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      .|...|.+++|+|++. .+++++.|+.|++||...+.... .+ .|.... ...|++++.++++++.|+.+++||++...
T Consensus       196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence            8999999999999887 56666999999999999777766 34 455554 33899999899999999999999999875


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ..+..+  ..|...|.++.|.|++..+            ++++.|+.+++||.....
T Consensus       275 ~~~~~~--~~~~~~v~~~~~~~~~~~~------------~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         275 SLLRTL--SGHSSSVLSVAFSPDGKLL------------ASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             cEEEEE--ecCCccEEEEEECCCCCEE------------EEeeCCCcEEEEEcCCCc
Confidence            533333  4788999999999854333            334556778888775443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.50  E-value=4.5e-13  Score=148.51  Aligned_cols=176  Identities=15%  Similarity=0.203  Sum_probs=133.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEe--CCCCCcEEEEEEccC----------CCeEEEEEeCCCeEEEEECCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRN----------SRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~--~~~~~~VssLafSpd----------g~~lLaSGs~DGtI~IWDl~t   69 (633)
                      |++...+|...-+|..|+|||+.+-+.+.+..  --|...|..|.--|.          -+..|++|+.|++|++||+..
T Consensus       332 Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~  411 (1080)
T KOG1408|consen  332 FDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAF  411 (1080)
T ss_pred             ecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccc
Confidence            67777888888999999999998755443211  114444555444331          012599999999999999965


Q ss_pred             CCce-e-----------E------------------------EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 006743           70 RSPK-V-----------S------------------------WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR  113 (633)
Q Consensus        70 ~~~~-v-----------~------------------------~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg  113 (633)
                      .... +           .                        ........+.+++++|++++|++|..-|+|+|||+..-
T Consensus       412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l  491 (1080)
T KOG1408|consen  412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL  491 (1080)
T ss_pred             ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence            2100 0           0                        01123456899999999999999999999999999887


Q ss_pred             ceeeEe-eCCCCeEEEEEec---CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 006743          114 RPSSCI-TYEAPFSSLAFID---DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (633)
Q Consensus       114 k~v~~i-~h~~~ItsLafSP---dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg  179 (633)
                      +....+ .|+..|.|+.|+.   ..+.|++++.|+.|+|||+.....++..+.  +|...|+++.|.-+|
T Consensus       492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld--~HSssITsvKFa~~g  559 (1080)
T KOG1408|consen  492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD--GHSSSITSVKFACNG  559 (1080)
T ss_pred             hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc--ccccceeEEEEeecC
Confidence            665555 6999999999986   367899999999999999988767777777  899999999998766

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.50  E-value=4e-13  Score=138.48  Aligned_cols=196  Identities=17%  Similarity=0.212  Sum_probs=150.0

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCC-CC---CcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeEEe
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDP-NE---QVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVSWL   77 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~-~~---~~VssLafSpdg~~lLaSGs~DGtI~IWDl-~t~~-~~v~~l   77 (633)
                      |+-.++++.+.+.-|.+||.-+|+..+.+..- |.   ..-.+++|+|||. .|++ +....|+|+|+ +.+. +.+...
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchhh
Confidence            66778899999999999999999988877642 11   1234699999998 4554 56789999999 3332 222222


Q ss_pred             c-----cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 006743           78 K-----QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS-NGRVVFY  149 (633)
Q Consensus        78 ~-----~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~-DGsV~IW  149 (633)
                      .     +..+.|.|++|+| +.+.+++|+.-..+-||.-..+.++..+ +|++.|+.++|.++|+.|++|.. |..|.+|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence            2     3367899999999 7789999999999999988888887776 69999999999999999999875 7889999


Q ss_pred             ECCCCCCceEEEeecCCCC-CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          150 DIRGKPQPLTVLRACSSSE-AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~-~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      |+|....++..+.  .|.+ .-..|-|+-          ...+.+|++|+.||.|++||+..+..
T Consensus       279 DiR~~~~pv~~L~--rhv~~TNQRI~FDl----------d~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  279 DIRYSRDPVYALE--RHVGDTNQRILFDL----------DPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             eehhccchhhhhh--hhccCccceEEEec----------CCCCceeeccCCCccEEEEecCCCCC
Confidence            9999877665555  4544 333444442          23566777778899999999987554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=5.4e-13  Score=142.73  Aligned_cols=170  Identities=18%  Similarity=0.252  Sum_probs=134.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC---------CceeEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRS   71 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~t---------gk~v~~~~~~~~~~VssLafSpdg-~~lLaSGs~DGtI~IWDl~t~~   71 (633)
                      |+-||.+|++|++||.|.+|.+-+         -+..+.+. +|.-.|+++.....+ +.++++++.|.++++||+..+.
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence            788999999999999999998732         23455555 467778888876552 3379999999999999999887


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----------------eeeE-eeCCC--CeEEEEEec
Q 006743           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------PSSC-ITYEA--PFSSLAFID  132 (633)
Q Consensus        72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk----------------~v~~-i~h~~--~ItsLafSP  132 (633)
                      ....  ......+.+++.+|.++.+++|+.+|.|.+.++....                .+.. .+|.+  .|+|++++-
T Consensus       210 LLlt--i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~  287 (476)
T KOG0646|consen  210 LLLT--ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST  287 (476)
T ss_pred             eeEE--EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence            4332  3456789999999999999999999999998875322                1112 25666  999999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       133 dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      ||..|++|+.||.|+|||+... ++++.+.  ...++|+.+.+.|
T Consensus       288 DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~--~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  288 DGTLLLSGDEDGKVCVWDIYSK-QCIRTLQ--TSKGPVTNLQINP  329 (476)
T ss_pred             CccEEEeeCCCCCEEEEecchH-HHHHHHh--hhccccceeEeec
Confidence            9999999999999999999987 4555554  2568899999876

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.6e-13  Score=148.41  Aligned_cols=190  Identities=15%  Similarity=0.212  Sum_probs=141.8

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC---------------
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT---------------   67 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl---------------   67 (633)
                      .|.|.+|++|+.||+|+||.+.+|.++..+.  ..+.|.||+|+|.++..+++.+....+.|-+-               
T Consensus       409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell  486 (733)
T KOG0650|consen  409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELL  486 (733)
T ss_pred             cCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhh
Confidence            5789999999999999999999999999887  46789999999988765555555444444332               


Q ss_pred             ------------------C---CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCc---------
Q 006743           68 ------------------T---GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRR---------  114 (633)
Q Consensus        68 ------------------~---t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk---------  114 (633)
                                        .   ....-+.....|...|..|.|+..|.||+++.-++   .|.|+++...+         
T Consensus       487 ~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk  566 (733)
T KOG0650|consen  487 ASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK  566 (733)
T ss_pred             hcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC
Confidence                              1   00111234456888899999999999999887653   67777764321         


Q ss_pred             --------------------------------eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743          115 --------------------------------PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus       115 --------------------------------~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l  161 (633)
                                                      .+..+ .....|..++++|.|..|++|+.|+.+..||+.-..++++.+
T Consensus       567 G~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l  646 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL  646 (733)
T ss_pred             CceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence                                            11000 123457789999999999999999999999999888888888


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .  .|...|++++|++.-            .++.+++.|+.+.|+.-
T Consensus       647 r--~H~~avr~Va~H~ry------------PLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  647 R--LHEKAVRSVAFHKRY------------PLFASGSDDGTVIVFHG  679 (733)
T ss_pred             h--hhhhhhhhhhhcccc------------ceeeeecCCCcEEEEee
Confidence            8  799999999999843            44555566777777754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.48  E-value=7.2e-14  Score=145.55  Aligned_cols=150  Identities=15%  Similarity=0.222  Sum_probs=127.5

Q ss_pred             ccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |||... .|++|+.|+.|.+||+..+.++.++..  .-..+.|+|+|.+ ..|++|.+|..++.||++.-...+....+|
T Consensus       195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dh  271 (433)
T KOG0268|consen  195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDH  271 (433)
T ss_pred             cCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCccc-cceeeccccccceehhhhhhcccchhhccc
Confidence            566654 567777999999999999998877653  2334569999955 479999999999999999888778888999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      ...|.+++|+|.|+-|++|+.|++|+||..+.+..--+.  ..-..|.|+.|+-|.++|++|+.|+.|++|..+..
T Consensus       272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            999999999999999999999999999999876543332  34567999999999999999999999999988754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=2.2e-12  Score=128.82  Aligned_cols=205  Identities=15%  Similarity=0.187  Sum_probs=145.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC---------Cc-eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS---------GA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t---------gk-~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      +|+|.+++|++|..+|.|.++.+++         ++ .+...+ .|...+..++|..+   +|++|++ |.|+=|..+..
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~   91 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEE   91 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeeehh---heeeccC-ceEEEeeehhh
Confidence            5899999999999999999998853         22 233334 47788888999833   5666665 99999987433


Q ss_pred             Cce-------eEEeccCC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEE
Q 006743           71 SPK-------VSWLKQHS-----APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWIL  137 (633)
Q Consensus        71 ~~~-------v~~l~~H~-----~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~L  137 (633)
                      ...       ......|.     ..|+++-..|..+-++.++.|+.++.||+++|+..+.+ +|.+.|.++.-...+..|
T Consensus        92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi  171 (325)
T KOG0649|consen   92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI  171 (325)
T ss_pred             hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence            210       00111122     46899999997777788889999999999999999888 699999999987777789


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP-dg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss  216 (633)
                      ++|++||+|+|||.++. +.+.++..+.|.....     | .|++|-+-  ..++..+++|+ ...+.+|.+|...+...
T Consensus       172 lsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lR-----p~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~v  242 (325)
T KOG0649|consen  172 LSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLR-----PDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCV  242 (325)
T ss_pred             eecCCCccEEEEecccc-ceeEEeccccChhhcC-----cccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEE
Confidence            99999999999999998 4566666544432211     1 12332221  12445555554 67889999987766554


Q ss_pred             ccc
Q 006743          217 VSL  219 (633)
Q Consensus       217 ~s~  219 (633)
                      .+.
T Consensus       243 fpi  245 (325)
T KOG0649|consen  243 FPI  245 (325)
T ss_pred             Eec
Confidence            443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.47  E-value=4.1e-13  Score=141.63  Aligned_cols=151  Identities=15%  Similarity=0.238  Sum_probs=125.8

Q ss_pred             ccCCCC-EEEEEECCCcEEEEECCCCce------eE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC----
Q 006743            2 YNCKDE-HLASISLSGDLILHNLASGAK------AA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----   68 (633)
Q Consensus         2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~------v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~----   68 (633)
                      |..+.. .|++|+.|..|+||.++.+..      +.  ....+|...|++|.|+|+|+ +|++|+++|.|.+|...    
T Consensus        21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~   99 (434)
T KOG1009|consen   21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRI   99 (434)
T ss_pred             eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCC
Confidence            444554 899999999999998864321      11  11235788899999999998 99999999999999875    


Q ss_pred             ----C-----C-C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCE
Q 006743           69 ----G-----R-S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWI  136 (633)
Q Consensus        69 ----t-----~-~-~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~  136 (633)
                          +     . . .....+.+|...|+.++|+|+++++++++.|+.+++||+..|+..... .|...+..++|.|.+++
T Consensus       100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence                2     1 0 124567789999999999999999999999999999999999998887 69999999999999999


Q ss_pred             EEEEEcCCeEEEEECCC
Q 006743          137 LTAGTSNGRVVFYDIRG  153 (633)
Q Consensus       137 LatGs~DGsV~IWDlrs  153 (633)
                      +++-+.|...+.+++..
T Consensus       180 v~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  180 VASKSSDRHPEGFSAKL  196 (434)
T ss_pred             hhhhccCcccceeeeee
Confidence            99999998777777654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.46  E-value=6.2e-12  Score=135.59  Aligned_cols=174  Identities=15%  Similarity=0.272  Sum_probs=141.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-------   73 (633)
                      +|.++|+ +++|..+|.|.||+..+.+..+... .|...|.+++...+|.  |++|+.|..|..||-.-.+..       
T Consensus       253 ~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~  328 (626)
T KOG2106|consen  253 TFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQ  328 (626)
T ss_pred             EEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchh
Confidence            3667776 5689999999999998777777777 5777888899999986  777999999999984211100       


Q ss_pred             --------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC
Q 006743           74 --------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY  121 (633)
Q Consensus        74 --------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h  121 (633)
                                                      .....+|......++.+|+.+.+++++.|+.+++|+  ..+++.....
T Consensus       329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~  406 (626)
T KOG2106|consen  329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII  406 (626)
T ss_pred             cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence                                            112456888899999999999999999999999999  5666666677


Q ss_pred             CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          122 EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       122 ~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ..++.|+.|+|.| .|+.|...|...+.|.++. ..+.+..   ...+++++.|+|+|.+++.+
T Consensus       407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~---d~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT---DNEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             cCceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe---cCCceEEEEEcCCCCEEEEe
Confidence            8999999999999 9999999999999999985 3333333   38899999999998888876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.46  E-value=1.9e-11  Score=124.71  Aligned_cols=197  Identities=25%  Similarity=0.388  Sum_probs=149.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc-eeEEEeCCCCCcEEEEEE-ccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk-~v~~~~~~~~~~VssLaf-Spdg~~lLaSGs~-DGtI~IWDl~t~~~~v~~l~   78 (633)
                      |.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++..+. |+.+.+||..........+.
T Consensus        73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  152 (466)
T COG2319          73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE  152 (466)
T ss_pred             ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence            56778888889899999999998876 666666533335566666 6666634554444 99999999987223467788


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCC
Q 006743           79 QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~-~LatGs~DGsV~IWDlrs~~  155 (633)
                      .|...|.+++|+|++.++++++. |+.+++||+..+..+..+ .|...|.+++|+|++. ++++++.|+.|++||.....
T Consensus       153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~  232 (466)
T COG2319         153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK  232 (466)
T ss_pred             cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence            99999999999999998888886 999999999987777666 4799999999999998 55555999999999888542


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                       .... ....|...+ ...|++++            .++++++.|+.+++||++....
T Consensus       233 -~~~~-~~~~~~~~~-~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         233 -LLRS-TLSGHSDSV-VSSFSPDG------------SLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             -EEee-ecCCCCcce-eEeECCCC------------CEEEEecCCCcEEEeeecCCCc
Confidence             2221 223566664 33787754            4445677899999999976554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.45  E-value=7.1e-13  Score=141.51  Aligned_cols=175  Identities=19%  Similarity=0.234  Sum_probs=140.1

Q ss_pred             eeEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCC---CCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCC
Q 006743           28 KAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTG---RSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLD  102 (633)
Q Consensus        28 ~v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t---~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~D  102 (633)
                      ....++. +...|.+++|+|... .++++|+.-|+|-+||+.+   ....+..+..|..+|.+|.|+| +...|++.+.|
T Consensus       178 ~~~v~kv-~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  178 ILNVAKV-TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             ecceeEe-cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            3334443 567899999999876 7899999999999999953   2333667789999999999999 88899999999


Q ss_pred             CeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 006743          103 KKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (633)
Q Consensus       103 GtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg  179 (633)
                      |+|++-|++.......+   .....+..+.|+.+...++.+..=|...+||.|+....+..+.  -|...|++|+++|. 
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~--lh~kKI~sv~~NP~-  333 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR--LHKKKITSVALNPV-  333 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh--hhhcccceeecCCC-
Confidence            99999999876433222   2455678888998888888888888999999999876555555  58889999999996 


Q ss_pred             CeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743          180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (633)
Q Consensus       180 ~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss  216 (633)
                                ...++++++.|++.+|||+|...+..+
T Consensus       334 ----------~p~~laT~s~D~T~kIWD~R~l~~K~s  360 (498)
T KOG4328|consen  334 ----------CPWFLATASLDQTAKIWDLRQLRGKAS  360 (498)
T ss_pred             ----------CchheeecccCcceeeeehhhhcCCCC
Confidence                      345677889999999999997766554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=4e-12  Score=141.01  Aligned_cols=178  Identities=18%  Similarity=0.206  Sum_probs=139.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~   79 (633)
                      +|. +|..|.+.+.+|.|.-||+.+++....+.. .+..|..++.+|.+. .++.|++||.++.++....... ...+..
T Consensus        76 ~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen   76 AWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             EEc-cCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeeccc
Confidence            466 566788889999999999999999888874 678899999999987 8999999997777777655522 233445


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      .++.|.++.|+|++..|+.|+.||.|++||..++..+..+.         ...-|.++.+-.+ ..|++|...|+|.+||
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD  231 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence            66899999999999999999999999999999988776331         1223667777655 4789999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ...+. .+....  .|...|.+++..+++.+++++
T Consensus       232 ~~~gT-LiqS~~--~h~adVl~Lav~~~~d~vfsa  263 (691)
T KOG2048|consen  232 SIFGT-LIQSHS--CHDADVLALAVADNEDRVFSA  263 (691)
T ss_pred             ccCcc-hhhhhh--hhhcceeEEEEcCCCCeEEEc
Confidence            99873 223233  688999999998865555544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.45  E-value=1.8e-12  Score=133.65  Aligned_cols=181  Identities=15%  Similarity=0.258  Sum_probs=140.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEEC-CCCceeEE---E---eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006743            1 MYNCKDEHLASISLSGDLILHNL-ASGAKAAE---L---KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl-~tgk~v~~---~---~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~   73 (633)
                      +|+|||.+|++| ....|+|||+ +.|+....   +   +......+.|++|+|.....++.|+....+-||.-.+..+ 
T Consensus       165 ~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-  242 (406)
T KOG2919|consen  165 QFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-  242 (406)
T ss_pred             EecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-
Confidence            599999999865 6779999998 44432211   1   1123678999999999887899999999999998887775 


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC-ceeeEe-eCCC-CeEE--EEEecCCCEEEEEEcCCeEE
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSR-RPSSCI-TYEA-PFSS--LAFIDDDWILTAGTSNGRVV  147 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtg-k~v~~i-~h~~-~Its--LafSPdG~~LatGs~DGsV~  147 (633)
                      ...+.+|.+.|+.++|.++|+.|++|.. |-.|-.||+|.- .++..+ .|.+ .-..  ....|++++|++|+.||.|+
T Consensus       243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~  322 (406)
T KOG2919|consen  243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR  322 (406)
T ss_pred             eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence            6778899999999999999999999986 568999999964 344333 2322 2222  45568899999999999999


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +||++....++..+.  .|...+..++++|--++++++
T Consensus       323 vwdlk~~gn~~sv~~--~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  323 VWDLKDLGNEVSVTG--NYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             EEecCCCCCcccccc--cccccccceecCcccceeeec
Confidence            999998555445444  688999999999987777665

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1.1e-11  Score=127.36  Aligned_cols=191  Identities=13%  Similarity=0.198  Sum_probs=137.3

Q ss_pred             CCCEEEEEECCCcEEEEECCC---------CceeEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCcee
Q 006743            5 KDEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~t---------gk~v~~~~~~~~~~VssLafSpdg-~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      -|+.+|+++.|++|.||.-..         ....+.+.. ....|.+|+|.|.. .-.|++++.||.|+||+........
T Consensus        72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs  150 (361)
T KOG2445|consen   72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS  150 (361)
T ss_pred             ccceEEEEecCCceeeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence            388999999999999997521         113344443 56678899999863 2378999999999999985433221


Q ss_pred             -----EE-------eccCCCCeEEEEEcC---CCCEEEEEeCC-----CeEEEEeCCCC--cee--eEe-eCCCCeEEEE
Q 006743           75 -----SW-------LKQHSAPTAGISFSS---DDKIIASVGLD-----KKLYTYDPGSR--RPS--SCI-TYEAPFSSLA  129 (633)
Q Consensus        75 -----~~-------l~~H~~~VtsLafSP---dg~~LaSgS~D-----GtVrIWDlrtg--k~v--~~i-~h~~~ItsLa  129 (633)
                           +.       ...+.....|+.|+|   ...+|+.|+.+     +.++||....+  +..  ..+ .|..+|++++
T Consensus       151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~  230 (361)
T KOG2445|consen  151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS  230 (361)
T ss_pred             cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence                 11       124667789999998   55678888876     47888876542  222  222 6899999999


Q ss_pred             EecC----CCEEEEEEcCCeEEEEECCCCC----------------CceEEEe-ecCCCCCeeEEEEccCCCeEEEeccC
Q 006743          130 FIDD----DWILTAGTSNGRVVFYDIRGKP----------------QPLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTC  188 (633)
Q Consensus       130 fSPd----G~~LatGs~DGsV~IWDlrs~~----------------k~v~~l~-~~~H~~~VtsLafsPdg~~Las~s~~  188 (633)
                      |.|+    ...||+++.|| |+||.++...                -++..+. ..+|.+.|..+.|+-           
T Consensus       231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-----------  298 (361)
T KOG2445|consen  231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-----------  298 (361)
T ss_pred             eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-----------
Confidence            9995    56899999999 9999998311                1223332 337999999999987           


Q ss_pred             CCCeEEEEeeCCCeEEccCCC
Q 006743          189 KAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       189 sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                       .+.+|.+.+.||.|++|...
T Consensus       299 -tGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  299 -TGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             -eeeEEeecCCCceeeehhhh
Confidence             45566666889999999653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=2.8e-12  Score=139.87  Aligned_cols=195  Identities=17%  Similarity=0.197  Sum_probs=150.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC--------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS--------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--   70 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t--------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~--   70 (633)
                      +|++..-.|++|+.||.|++|+++.        -+.+.+|.+ |..+|-|+++.+++. .+++|+.||+|+.|++...  
T Consensus       301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~d  378 (577)
T KOG0642|consen  301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQD  378 (577)
T ss_pred             hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCce-EEEeeccCceeeeeccCCCCC
Confidence            4677778999999999999999932        235667776 667778899999987 7999999999999966421  


Q ss_pred             -------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----------------------------
Q 006743           71 -------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP----------------------------  115 (633)
Q Consensus        71 -------~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~----------------------------  115 (633)
                             .....++.+|.+.|+.++++.....|++|+.||+|+.|+.....+                            
T Consensus       379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s  458 (577)
T KOG0642|consen  379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS  458 (577)
T ss_pred             cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence                   122457889999999999999888899999999999998743322                            


Q ss_pred             ----------------eeEee--------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCee
Q 006743          116 ----------------SSCIT--------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVS  171 (633)
Q Consensus       116 ----------------v~~i~--------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~Vt  171 (633)
                                      +.++.        ....+.-+.++|.+.+.+++..|+.|+++|..++. ++....  .|...++
T Consensus       459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~-~l~s~~--a~~~svt  535 (577)
T KOG0642|consen  459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK-ILHSMV--AHKDSVT  535 (577)
T ss_pred             cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc-cchhee--eccceec
Confidence                            00000        11335667888999999999999999999999884 333333  6899999


Q ss_pred             EEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          172 SLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       172 sLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ++++.|+|.++            ++++.|+.+.+|.+....
T Consensus       536 slai~~ng~~l------------~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  536 SLAIDPNGPYL------------MSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             ceeecCCCceE------------EeecCCceeehhhccchh
Confidence            99999966555            455779999999875433

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=4.6e-12  Score=132.97  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=125.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECC------CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            2 YNCKDEHLASISLSGDLILHNLA------SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~------tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      |+.+|++|++|+.|..+.+|++.      +.+++.....+|...|.|++|+-.++ ++++|..+++|.+.|+++.+.  .
T Consensus        64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qs--i  140 (609)
T KOG4227|consen   64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQS--I  140 (609)
T ss_pred             eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeeccccee--e
Confidence            78899999999999999999985      34566666666778999999998776 899999999999999998873  2


Q ss_pred             EeccCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-ee---eEeeCCCCeEEEEEecC-CCEEEEEEcCCeEE
Q 006743           76 WLKQHS---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PS---SCITYEAPFSSLAFIDD-DWILTAGTSNGRVV  147 (633)
Q Consensus        76 ~l~~H~---~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v---~~i~h~~~ItsLafSPd-G~~LatGs~DGsV~  147 (633)
                      .+..|.   +.|+.+..+|-.+.|++.+.++.|.+||.+..+ ..   ...........+.|+|. ...|++.+..+-+-
T Consensus       141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~  220 (609)
T KOG4227|consen  141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN  220 (609)
T ss_pred             eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence            233444   499999999999999999999999999998755 22   22246677889999995 57788888889999


Q ss_pred             EEECCCCCCc
Q 006743          148 FYDIRGKPQP  157 (633)
Q Consensus       148 IWDlrs~~k~  157 (633)
                      +||.+....+
T Consensus       221 ~~D~R~~~~~  230 (609)
T KOG4227|consen  221 VFDRRMQARP  230 (609)
T ss_pred             ceeeccccch
Confidence            9999976543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=2.7e-11  Score=133.76  Aligned_cols=178  Identities=15%  Similarity=0.202  Sum_probs=126.6

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~   75 (633)
                      +|+|||++|+.++.+   ..|++||+.+++... +.. ......+++|+|+|+.++++.+.+|  .|++||+.++.  ..
T Consensus       210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~-~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~  285 (433)
T PRK04922        210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VAS-FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LT  285 (433)
T ss_pred             cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ecc-CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC--eE
Confidence            589999999987643   469999998776543 222 2234446899999996666777666  59999998876  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~-DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG---sV~IW  149 (633)
                      .+..+......++|+||++.|+.++. ++  .|+++|+.+++.............++|+|||++|+..+.++   .|++|
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence            56666666678999999998887764 33  47888888776554443444555789999999998765443   69999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~  187 (633)
                      |+.++..  ..+.   +......+.|+|+|++++....
T Consensus       366 d~~~g~~--~~Lt---~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        366 DLSTGSV--RTLT---PGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             ECCCCCe--EECC---CCCCCCCceECCCCCEEEEEEe
Confidence            9987632  2332   3334567899999988776533

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.42  E-value=8e-12  Score=123.88  Aligned_cols=148  Identities=16%  Similarity=0.285  Sum_probs=108.9

Q ss_pred             ccCCCCEEEEEEC----------CCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCC
Q 006743            2 YNCKDEHLASISL----------SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTG   69 (633)
Q Consensus         2 FSpdG~~LaSgs~----------DG~I~IWDl~-tgk~v~~~~~~~~~~VssLafSpdg~~lLaS-Gs~DGtI~IWDl~t   69 (633)
                      |+++|++|++-..          -|...||-++ .+..+..+.-.....|.+++|+|+++.++++ |..++.|.+||++.
T Consensus        13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~   92 (194)
T PF08662_consen   13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG   92 (194)
T ss_pred             ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc
Confidence            8999998875433          1335555552 2334455544344569999999999854433 44678999999973


Q ss_pred             CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc----
Q 006743           70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS----  142 (633)
Q Consensus        70 ~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~----  142 (633)
                      ..  +..+  +...++.+.|+|+|++|++++.+   |.|.+||+++.+.+....|.. +..++|+|||++|+++..    
T Consensus        93 ~~--i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~  167 (194)
T PF08662_consen   93 KK--IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRL  167 (194)
T ss_pred             cE--eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccce
Confidence            32  3433  35678999999999999998754   579999999888887776654 789999999999998875    


Q ss_pred             --CCeEEEEECCCC
Q 006743          143 --NGRVVFYDIRGK  154 (633)
Q Consensus       143 --DGsV~IWDlrs~  154 (633)
                        |..++||+....
T Consensus       168 ~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  168 RVDNGFKIWSFQGR  181 (194)
T ss_pred             eccccEEEEEecCe
Confidence              677899998653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.42  E-value=1.6e-11  Score=132.54  Aligned_cols=198  Identities=13%  Similarity=0.172  Sum_probs=150.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE---EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAA---ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~---~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+|.+..|+.....|+++.|+++.+...+   .++.+.+..|.|++|.++|+  +++|..+|.|.||+..+... .+..
T Consensus       207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~-~k~~  283 (626)
T KOG2106|consen  207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRI-SKQV  283 (626)
T ss_pred             EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceE-EeEe
Confidence            488988877777778999999998876543   45556678899999999998  89999999999999987764 3444


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------------------------------------ee
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-----------------------------------------PS  116 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-----------------------------------------~v  116 (633)
                      ..|.+.|.+++...+|.++- |+.|+.|..||-.-.+                                         .+
T Consensus       284 ~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  284 HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             eecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence            59999999999998887655 9999999999831000                                         01


Q ss_pred             eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe-----------
Q 006743          117 SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE-----------  185 (633)
Q Consensus       117 ~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~-----------  185 (633)
                      ..+.|......++.+|+...+++++.|+.|++|+ . . ++.....   -..++.|+.|+|.| .++.+           
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~-k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~  435 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-H-KLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDT  435 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEcc-C-C-ceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEec
Confidence            1123566777899999999999999999999999 2 2 3332222   34678899999988 55432           


Q ss_pred             ------------------ccCCCCeEEEEeeCCCeEEccCCC
Q 006743          186 ------------------TTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       186 ------------------s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                                        ....++.+++.++.|+.|.||.+.
T Consensus       436 e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  436 ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             ccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence                              234566777778888888888664

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=6.2e-12  Score=131.34  Aligned_cols=194  Identities=15%  Similarity=0.234  Sum_probs=147.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-------   73 (633)
                      ||++.-..+|++..|-.|++||-.+ +....++......|.|++|-|.+...|+.|+..| |.||........       
T Consensus       105 aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~  182 (445)
T KOG2139|consen  105 AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMM  182 (445)
T ss_pred             eechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccc
Confidence            4666666778899999999999765 7777777656678999999999877788888744 999987422111       


Q ss_pred             ------eEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           74 ------VSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        74 ------v~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                            +..-.+| .+|+.++|++||..+++++. |..|.|||..++..+... ...+.+.-+.|+|||.+|+++.-|+.
T Consensus       183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav  261 (445)
T KOG2139|consen  183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV  261 (445)
T ss_pred             cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence                  1222344 78999999999999999885 558999999999888777 45678889999999999999999999


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS  202 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~  202 (633)
                      .++|.........+..   --.+.|...+|+|+|++|+..  ..++..+.+..-++.
T Consensus       262 frlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~--~sgsp~lysl~f~~~  313 (445)
T KOG2139|consen  262 FRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFA--CSGSPRLYSLTFDGE  313 (445)
T ss_pred             eeeehhcccceeccee---ccCCceeeeeecCCCCEEEEE--EcCCceEEEEeecCC
Confidence            9999765432222222   245699999999999998765  336666666654443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.8e-11  Score=133.61  Aligned_cols=189  Identities=17%  Similarity=0.182  Sum_probs=126.5

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--CCCCceeE
Q 006743            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl--~t~~~~v~   75 (633)
                      +|+|||+.|+..+.+   ..|++||+.+++.... .. ....+....|+|+|+.++++.+.+|...||.+  .++.  ..
T Consensus       202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~  277 (427)
T PRK02889        202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-AN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LR  277 (427)
T ss_pred             eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC--cE
Confidence            589999999887643   3599999988875433 22 22344568999999966667788887666654  4444  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGL-DKK--LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~-DGt--VrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG---sV~IW  149 (633)
                      .+..+...+....|+|||++|+.++. ++.  |+++|+.++...............+|+|||++|+..+.++   .|++|
T Consensus       278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~  357 (427)
T PRK02889        278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ  357 (427)
T ss_pred             ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            56666666778899999998887664 344  4444555555443333333455688999999998776554   69999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs  198 (633)
                      |+.++.  ...+.   .......+.|+|+|++|+......+...+....
T Consensus       358 d~~~g~--~~~lt---~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~  401 (427)
T PRK02889        358 DLATGQ--VTALT---DTTRDESPSFAPNGRYILYATQQGGRSVLAAVS  401 (427)
T ss_pred             ECCCCC--eEEcc---CCCCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence            998763  22232   223456789999999888775444433333333

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.42  E-value=1.1e-11  Score=122.93  Aligned_cols=153  Identities=18%  Similarity=0.277  Sum_probs=108.5

Q ss_pred             EEEccCCCeEEEEEeC---------CCeEEEEECCCCCceeEEecc-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEEeC
Q 006743           43 LDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKVSWLKQ-HSAPTAGISFSSDDKIIASV--GLDKKLYTYDP  110 (633)
Q Consensus        43 LafSpdg~~lLaSGs~---------DGtI~IWDl~t~~~~v~~l~~-H~~~VtsLafSPdg~~LaSg--S~DGtVrIWDl  110 (633)
                      +.|+++|+.+++....         -+...||.++.....+..+.- ..++|.+++|+|+++.|+++  ..++.|.+||+
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~   90 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV   90 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence            7899999866665552         234666666443333444432 34579999999999987655  35679999999


Q ss_pred             CCCceeeEeeCCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743          111 GSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (633)
Q Consensus       111 rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~  187 (633)
                      + ++.+..+. ...+..+.|+|+|++|++++.   .|.|.+||.++.+    .+....|. .++.++|+|+|++++++..
T Consensus        91 ~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   91 K-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK----KISTFEHS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             c-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE----EeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence            7 55555554 567889999999999999875   4679999999662    23333343 4789999999999988732


Q ss_pred             CCCCeEEEEeeCCCeEEccCC
Q 006743          188 CKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       188 ~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ..      -...|+.++||+.
T Consensus       164 ~~------r~~~dng~~Iw~~  178 (194)
T PF08662_consen  164 SP------RLRVDNGFKIWSF  178 (194)
T ss_pred             cc------ceeccccEEEEEe
Confidence            11      1235889999976

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=2.1e-12  Score=140.20  Aligned_cols=152  Identities=16%  Similarity=0.178  Sum_probs=125.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCC---------C
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTG---------R   70 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t---------~   70 (633)
                      +|+.||.+|++|+.|-.+.|||.-..+.+..+..+|...|.+++|-|. ++.++++|+.|..|++||+..         .
T Consensus        57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~  136 (758)
T KOG1310|consen   57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM  136 (758)
T ss_pred             eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence            589999999999999999999999999999998889899999999985 344889999999999999974         2


Q ss_pred             CceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcee-------e----EeeCCCCeEEEEEecC-CCEE
Q 006743           71 SPKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPS-------S----CITYEAPFSSLAFIDD-DWIL  137 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlrtgk~v-------~----~i~h~~~ItsLafSPd-G~~L  137 (633)
                      +....++..|...|..|+-.|++ +.|.++++||+|+-||+|.....       .    ....--...|+.++|. ..+|
T Consensus       137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l  216 (758)
T KOG1310|consen  137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL  216 (758)
T ss_pred             cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence            23356677899999999999966 89999999999999999863211       0    0112234678999994 6889


Q ss_pred             EEEEcCCeEEEEECC
Q 006743          138 TAGTSNGRVVFYDIR  152 (633)
Q Consensus       138 atGs~DGsV~IWDlr  152 (633)
                      ++|+.|-..++||.|
T Consensus       217 aVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  217 AVGGSDPFARLYDRR  231 (758)
T ss_pred             EecCCCchhhhhhhh
Confidence            999999999999965

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.40  E-value=2.7e-12  Score=139.02  Aligned_cols=189  Identities=15%  Similarity=0.243  Sum_probs=144.1

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG   86 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vts   86 (633)
                      +.++.++.||.+.|.+ +.++....+.. |...+.+-.|+++|. -|+++++||.|+||.-.+.-  ..++.....+|+|
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~A-H~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c  150 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISA-HAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRC  150 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhh-hhhhhhhcccCCCCc-eeeeecCCceEEEEeccchH--HHHHhhcCceeEE
Confidence            4788899999999998 45666666665 666677789999998 79999999999999987654  3456667789999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCC-CceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 006743           87 ISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS  165 (633)
Q Consensus        87 LafSPdg~~LaSgS~DGtVrIWDlrt-gk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~  165 (633)
                      ++|.|+.+.++.|..+. +.|=-+.. .++++...|.+-|.++.|++..+.|++|++|-..+|||....    ..+....
T Consensus       151 ~~W~p~S~~vl~c~g~h-~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----~Lf~S~~  225 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQGGH-ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----NLFTSAA  225 (737)
T ss_pred             EEECCCCCceEEecCCe-EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----ccccCCh
Confidence            99999776666555443 45544443 355666689999999999999999999999999999998765    3455557


Q ss_pred             CCCCeeEEEEccCCCeEE-----------------EeccCCCCeEEEEeeCCCeEEc
Q 006743          166 SSEAVSSLCWQRAKPVFI-----------------DETTCKAETALLGGAVGDSILM  205 (633)
Q Consensus       166 H~~~VtsLafsPdg~~La-----------------s~s~~sd~~lLlSgs~Dg~IkI  205 (633)
                      |..+|++++|.|+..|++                 .-+|+.|+..+.++...|.+.+
T Consensus       226 ~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  226 EEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             hccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            899999999999855544                 1235566666666666665544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.40  E-value=2.5e-12  Score=141.71  Aligned_cols=169  Identities=16%  Similarity=0.329  Sum_probs=135.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      ||-|||..|+.+. +..+.|||.++|..+..+++ |++.|.||+|+.+|. .|++|+.|+.|.||.-.-..   ..-..|
T Consensus        19 afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG---~LkYSH   92 (1081)
T KOG1538|consen   19 AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG---ILKYSH   92 (1081)
T ss_pred             EECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCc-eeccCCCceeEEEecccccc---eeeecc
Confidence            5889999888775 55899999999999999997 778899999999998 89999999999999875443   223579


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      +..|.|+.|+|-...+++++-.. .-+|...... +........|.+++|..||.+++.|..||+|.|-+.... ..+.+
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I  169 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKI  169 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEE
Confidence            99999999999888889888653 6778766433 223334567899999999999999999999999865443 33333


Q ss_pred             EeecCCCCCeeEEEEccC
Q 006743          161 LRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPd  178 (633)
                      -+--+...+|.+++|+|.
T Consensus       170 ~Rpgg~Nspiwsi~~~p~  187 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPS  187 (1081)
T ss_pred             eCCCCCCCCceEEEecCC
Confidence            333467789999999985

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=5.7e-11  Score=131.27  Aligned_cols=178  Identities=13%  Similarity=0.141  Sum_probs=123.4

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~---DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~   75 (633)
                      +|+|||+.|+..+.   +..|++||+.+++......  ....+..++|+|+|+.++++...+|  .|++||+.++.  ..
T Consensus       205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~~  280 (429)
T PRK03629        205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IR  280 (429)
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--EE
Confidence            58999999986542   3579999998876433221  1222345799999996666656565  58899998776  34


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW  149 (633)
                      .+..+...+....|+||++.|+.++.++   .|+++|+.+++............+.+|+|||++|+..+.+   ..|++|
T Consensus       281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~  360 (429)
T PRK03629        281 QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  360 (429)
T ss_pred             EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence            4555556788999999999988777643   5666688777655444444556788999999999876543   358899


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~  187 (633)
                      |+.++.  ...+..   ........|+|||++|+..+.
T Consensus       361 dl~~g~--~~~Lt~---~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        361 DLATGG--VQVLTD---TFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             ECCCCC--eEEeCC---CCCCCCceECCCCCEEEEEEc
Confidence            998763  233331   122456789999888877643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.39  E-value=2.3e-11  Score=137.54  Aligned_cols=186  Identities=18%  Similarity=0.229  Sum_probs=147.7

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc-e----eEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            4 CKDEHLASISLSGDLILHNLASGA-K----AAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk-~----v~~~~~~~~~~VssLafSpdg-~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +=|.+++++..++.|.||+..+.+ .    +..++. ..+.|+++ ++|.- =+.++.|+.+|.++||++++++. +..+
T Consensus       122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~-~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-v~~f  198 (910)
T KOG1539|consen  122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKV-EGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV-VYTF  198 (910)
T ss_pred             eecceEEEEEccCcEEEEEeccccccccccceeeec-cCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE-EEEe
Confidence            347889999999999999987741 1    122222 22336654 45542 23689999999999999999984 7889


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC-CCeEEEEEecCCCE-EEEEEcCCeEEEEECCCCC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE-APFSSLAFIDDDWI-LTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~-~~ItsLafSPdG~~-LatGs~DGsV~IWDlrs~~  155 (633)
                      .++...|+++.-+|--..++.|..+|+|.+++++.++.+..+.+. +.|+.+.|..||.. +++|+..|.+.+||++..+
T Consensus       199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk  278 (910)
T KOG1539|consen  199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK  278 (910)
T ss_pred             cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence            999999999999998889999999999999999999999999886 99999999999975 4567777999999999875


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcc
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIW  206 (633)
                      ....+.+  .|.+.|....|.+            ++.++++.+.|+.+++|
T Consensus       279 l~~v~~n--ah~~sv~~~~fl~------------~epVl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  279 LINVTRN--AHYGSVTGATFLP------------GEPVLVTAGADNSLKVW  315 (910)
T ss_pred             eeeeeec--cccCCcccceecC------------CCceEeeccCCCceeEE
Confidence            4433333  7889999999988            45556666667777766

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.38  E-value=4.8e-12  Score=138.97  Aligned_cols=198  Identities=22%  Similarity=0.272  Sum_probs=152.2

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006743            2 YNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK   73 (633)
Q Consensus         2 FSp-dG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~   73 (633)
                      |+| |.+.||+++.||.|++|.+..+.       ....+.. |.+.|+.+.|+|-...+|++++.|-+|+|||+.+.+. 
T Consensus       635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-  712 (1012)
T KOG1445|consen  635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-  712 (1012)
T ss_pred             cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-
Confidence            555 45789999999999999986543       3344554 7788999999998777999999999999999998875 


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCC----eE
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNG----RV  146 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DG----sV  146 (633)
                      ...+.+|.+.|.+++|+|+|+.+++.+.||+|++|..+++..-..-+   .+..-..+.|.-||++|++.+.|.    .|
T Consensus       713 ~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv  792 (1012)
T KOG1445|consen  713 YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQV  792 (1012)
T ss_pred             hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhh
Confidence            45688999999999999999999999999999999999865432221   334455678888999999888764    58


Q ss_pred             EEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          147 VFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       147 ~IWDlrs~~-k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .+||..+.. .++          .+..+...|  ..|+-.++.+.+.++++|-.|..|.+|++....+
T Consensus       793 ~~Y~Aq~l~~~pl----------~t~~lDvap--s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  793 QMYDAQTLDLRPL----------YTQVLDVAP--SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             hhhhhhhccCCcc----------eeeeecccC--ccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            899887642 111          122333333  2344445667888999999999999999875443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.38  E-value=1.1e-10  Score=126.98  Aligned_cols=181  Identities=18%  Similarity=0.218  Sum_probs=129.4

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~   75 (633)
                      +|+|||++|+.+..+   ..|++||+.+++......  ....+.+++|+|+++.++++...++  .|++||+.++.  ..
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~  271 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LT  271 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC--EE
Confidence            489999999887654   479999998876543322  2344556899999986666666555  58888988765  34


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG---sV~IW  149 (633)
                      .+..+........|+|++++|+.++..+   .|++||+.+++......+...+..+.|+|+|++|+.+..++   .|++|
T Consensus       272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence            4555655566789999999887766532   68889998877655555566778899999999999888776   79999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                      |+.+..  ...+.   .........|+|++++|+......+
T Consensus       352 d~~~~~--~~~l~---~~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       352 DLDGGG--ERVLT---DTGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             eCCCCC--eEEcc---CCCCCCCceECCCCCEEEEEEeCCC
Confidence            998752  23333   1223456789999888876644333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=8.8e-11  Score=129.74  Aligned_cols=176  Identities=14%  Similarity=0.167  Sum_probs=128.4

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~---DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~   75 (633)
                      +|+|||+.|+..+.   +..|++||+.+++.. .+.. ....+...+|+|+|+.++++.+.++.  |++||+.++.  ..
T Consensus       208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~  283 (435)
T PRK05137        208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TT  283 (435)
T ss_pred             EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eE
Confidence            48999999987753   468999999887654 3332 33455678999999976777777765  7777888776  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~D-G--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW  149 (633)
                      .+..+.......+|+||++.|+.++.. +  .|++||+..+...........+....|+|||++|+....+   ..|.+|
T Consensus       284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence            566676777889999999998877643 3  6899998877665554455667778999999999876643   368889


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      |+.+..  ...+.   ....+..+.|+|+|+.|+..
T Consensus       364 d~~~~~--~~~lt---~~~~~~~p~~spDG~~i~~~  394 (435)
T PRK05137        364 KPDGSG--ERILT---SGFLVEGPTWAPNGRVIMFF  394 (435)
T ss_pred             ECCCCc--eEecc---CCCCCCCCeECCCCCEEEEE
Confidence            986543  23333   22347788999998887665

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.37  E-value=9.1e-12  Score=135.01  Aligned_cols=177  Identities=17%  Similarity=0.225  Sum_probs=135.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |++||.-|++++.||.|+||.- +|-....+. .....|+|++|.|+.++++++.+  +.+.|=-+.-... +..++.|.
T Consensus       112 W~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHD  186 (737)
T KOG1524|consen  112 WSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHD  186 (737)
T ss_pred             cCCCCceeeeecCCceEEEEec-cchHHHHHh-hcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-eeEEeccC
Confidence            8999999999999999999984 554333332 35678999999999987776554  5566666655443 56679999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l  161 (633)
                      +-|.++.|++..++|++|++|-..++||-........-.|+.+|++++|+|+ +.++.++. .++++   ..        
T Consensus       187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~--------  253 (737)
T KOG1524|consen  187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SS--------  253 (737)
T ss_pred             cEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-eeeee---cC--------
Confidence            9999999999999999999999999999876555555579999999999999 55555554 23331   11        


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg  201 (633)
                         ...+.|..++|++||..++++  ...+.+++.-..+.
T Consensus       254 ---p~~GSifnlsWS~DGTQ~a~g--t~~G~v~~A~~ieq  288 (737)
T KOG1524|consen  254 ---PRVGSIFNLSWSADGTQATCG--TSTGQLIVAYAIEQ  288 (737)
T ss_pred             ---CCccceEEEEEcCCCceeecc--ccCceEEEeeeehh
Confidence               245789999999999999887  44666666655444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.37  E-value=1.2e-11  Score=126.15  Aligned_cols=181  Identities=13%  Similarity=0.271  Sum_probs=137.5

Q ss_pred             CCCEEEEEECCCcEEEEECCCCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC--
Q 006743            5 KDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH--   80 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H--   80 (633)
                      +-++|.+.+-|-+..|||++++..  +++-...|...|.+|+|...+...|++.+.||.|+++|++..+........-  
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            346888999999999999998733  3332234778889999999888899999999999999998776433333322  


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCC-eEEEEeCCCC-ceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCC
Q 006743           81 SAPTAGISFSS-DDKIIASVGLDK-KLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        81 ~~~VtsLafSP-dg~~LaSgS~DG-tVrIWDlrtg-k~v~~i-~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~  155 (633)
                      ..+...++|++ |.+++++-..|. .|.|.|+|.. .++..+ .|.+.|+.++|.|. ...|.+++.|..+.+||+....
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            46789999999 888999877765 7999999974 344444 79999999999996 5789999999999999998643


Q ss_pred             C--ceEEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 006743          156 Q--PLTVLRACSSSEAVSSLCWQR-AKPVFIDE  185 (633)
Q Consensus       156 k--~v~~l~~~~H~~~VtsLafsP-dg~~Las~  185 (633)
                      .  ....+-.+...+.|..+.|++ ...+++.|
T Consensus       322 ~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  322 RENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             ccCCCCchhhhhccceeeeeeecccCCCEEEEE
Confidence            2  111112223568899999996 34566555

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.37  E-value=1.6e-10  Score=122.29  Aligned_cols=196  Identities=9%  Similarity=0.028  Sum_probs=128.1

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECC-CCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---e
Q 006743            1 MYNCKDEHLASIS-LSGDLILHNLA-SGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---K   73 (633)
Q Consensus         1 AFSpdG~~LaSgs-~DG~I~IWDl~-tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~---~   73 (633)
                      +++|++++|++++ .++.|.+|++. +++.  +....  .......++|+|+++.++++...++.|.+|++.....   .
T Consensus        41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~  118 (330)
T PRK11028         41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP  118 (330)
T ss_pred             EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence            4789999987765 57889999986 3332  22222  2223456999999985555555689999999964321   1


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceee-------EeeCCCCeEEEEEecCCCEEEEEEc-CC
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-------CITYEAPFSSLAFIDDDWILTAGTS-NG  144 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v~-------~i~h~~~ItsLafSPdG~~LatGs~-DG  144 (633)
                      +..+ .+.....+++++|+++++++++ .++.|.+||+.+...+.       ..........++|+|+|+++++++. ++
T Consensus       119 ~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~  197 (330)
T PRK11028        119 IQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS  197 (330)
T ss_pred             eeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence            2222 2334578889999998886555 56899999998633221       1223455778999999999988876 89


Q ss_pred             eEEEEECCCCCCc---eEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          145 RVVFYDIRGKPQP---LTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       145 sV~IWDlrs~~k~---v~~l~~~----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .|.+||++.....   +..+...    .+......+.|+|++++++++           ...++.|.+|++..
T Consensus       198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-----------~~~~~~I~v~~i~~  259 (330)
T PRK11028        198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-----------DRTASLISVFSVSE  259 (330)
T ss_pred             EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-----------cCCCCeEEEEEEeC
Confidence            9999999742111   2222211    112233468888987766554           23467888888754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=4.4e-11  Score=132.04  Aligned_cols=171  Identities=19%  Similarity=0.219  Sum_probs=115.7

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCCce
Q 006743            1 MYNCKDEHLASISLS---GDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPK   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW--Dl~t~~~~   73 (633)
                      +|+|||++|+.++.+   ..|++||+.+++...  .+.+    ....++|+|+|+.++++...+|.+.||  |+.++.  
T Consensus       210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--  283 (429)
T PRK01742        210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT--  283 (429)
T ss_pred             eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC--
Confidence            589999999987654   369999998876432  2322    223579999998555555678876555  665555  


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-CceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrt-gk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      ...+..+...+...+|+||++.|+.++ .++...||++.. +.....+.+..  .++.|+|||++|+..+.++ +.+||+
T Consensus       284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl  360 (429)
T PRK01742        284 PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDL  360 (429)
T ss_pred             eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEEC
Confidence            455667777888999999999877665 567777777643 22223334433  4678999999999888765 566999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      .++..  ..+.. .  .....+.|+|+|++|+..
T Consensus       361 ~~g~~--~~lt~-~--~~~~~~~~sPdG~~i~~~  389 (429)
T PRK01742        361 TSGST--EVLSS-T--FLDESPSISPNGIMIIYS  389 (429)
T ss_pred             CCCCe--EEecC-C--CCCCCceECCCCCEEEEE
Confidence            87642  22221 1  123567899987776665

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.36  E-value=6.6e-11  Score=125.25  Aligned_cols=195  Identities=10%  Similarity=0.079  Sum_probs=129.9

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCC-Cc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-
Q 006743            1 MYNCKDEHLASISL-SGDLILHNLAS-GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG~I~IWDl~t-gk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v-   74 (633)
                      +|+|+|++|++++. ++.|.+|++.+ +.   .+..+.  .......++++|+++.++++...++.|.+||+.+..... 
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            47899999988764 78999999964 32   222222  223356688999998666777778999999997633111 


Q ss_pred             -----EEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCC--Cce--eeEee-C------CCCeEEEEEecCCCEE
Q 006743           75 -----SWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGS--RRP--SSCIT-Y------EAPFSSLAFIDDDWIL  137 (633)
Q Consensus        75 -----~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrt--gk~--v~~i~-h------~~~ItsLafSPdG~~L  137 (633)
                           .... .......++|+|++++++++.. ++.|.+||+..  ++.  +..+. .      ......+.++|+|+++
T Consensus       164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                 1111 2344678999999999988876 89999999973  332  22221 1      1223468899999999


Q ss_pred             EEEEc-CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          138 TAGTS-NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       138 atGs~-DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +++.. ++.|.+|++..............-......+.|+|+|++|++.           ...++.|.+|++.
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va-----------~~~~~~v~v~~~~  304 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA-----------GQKSHHISVYEID  304 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE-----------EccCCcEEEEEEc
Confidence            99865 7899999997543333333321112345678898877666543           3347788888664

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.35  E-value=6.7e-12  Score=129.78  Aligned_cols=144  Identities=10%  Similarity=0.154  Sum_probs=119.1

Q ss_pred             EEEEEECCCcEEEEECCCCc---eeEEEeCC-CCCcEEEEEEccC---CCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            8 HLASISLSGDLILHNLASGA---KAAELKDP-NEQVLRVLDYSRN---SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk---~v~~~~~~-~~~~VssLafSpd---g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .+++++ .+.+.||+.....   .++.+... +.+....++|+-+   ++-++|+|+.-|.|+|.|+...+. ...+.+|
T Consensus        57 vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-~~~~~gh  134 (385)
T KOG1034|consen   57 VFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-SKNYRGH  134 (385)
T ss_pred             eEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-ccceecc
Confidence            444444 4578888876433   33444433 4556666788754   344899999999999999988875 6778999


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      ...|+.+.+.| +.+++++++.|..||+||+++..++..+    +|.+.|.++.|+++|.+|++++.|..|.+|++..
T Consensus       135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            99999999999 7789999999999999999999999988    4899999999999999999999999999999983

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=1.4e-11  Score=141.58  Aligned_cols=194  Identities=12%  Similarity=0.215  Sum_probs=142.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEecc
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQ   79 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~~   79 (633)
                      |.....+|+++|.-..|+|||......+..+.......++++.-+-.+.++|++|..||.|++||.+...  ..+...+.
T Consensus      1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred             hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence            4444556666666889999999888888887766667777766554444599999999999999996544  35778889


Q ss_pred             CCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEe---e---CCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           80 HSAP--TAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI---T---YEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        80 H~~~--VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~~i---~---h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      |+..  |..+.+.+.|- .|++|+.||.|++||+|.......+   .   .++..+++..+++..+||+|+. +.|+||+
T Consensus      1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred             cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence            9988  99999998655 4999999999999999984322222   2   2446999999999999999998 9999999


Q ss_pred             CCCCCCceEEEe-ec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          151 IRGKPQPLTVLR-AC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       151 lrs~~k~v~~l~-~~--~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +.....-..... .+  ...+.+.|++|+|....            ++.|..|..|.||-.
T Consensus      1332 ~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~l------------lAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1332 LSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLL------------LAAGSADSTVSIYSC 1380 (1387)
T ss_pred             cChhhhcccccCcccccCcCCCcceeeecchhHh------------hhhccCCceEEEeec
Confidence            986432111111 00  23467899999995444            444466788888743

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=8.4e-12  Score=129.60  Aligned_cols=148  Identities=24%  Similarity=0.348  Sum_probs=123.1

Q ss_pred             eEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeeEee---CC-CC
Q 006743           51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCIT---YE-AP  124 (633)
Q Consensus        51 ~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~-~~  124 (633)
                      ..++++...|.|++||..+++ .+..++++...++.++|..  .+..+.+|+.||+|++||+|.......+.   +. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            368889999999999999866 4678899999999999976  57789999999999999999876554442   32 46


Q ss_pred             eEEEEEecCCCEEEEEEc----CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCC
Q 006743          125 FSSLAFIDDDWILTAGTS----NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG  200 (633)
Q Consensus       125 ItsLafSPdG~~LatGs~----DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~D  200 (633)
                      ..|++.+-.++++++|..    |-.|.+||+|+.++++..+.. .|..-|++++|+|+           +-.+|++|+.|
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~-----------~pnlLlSGSvD  187 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPS-----------DPNLLLSGSVD  187 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-hccCcceeEEecCC-----------CCCeEEeeccc
Confidence            778887777888888864    667999999998776666553 69999999999996           67789999999


Q ss_pred             CeEEccCCCCC
Q 006743          201 DSILMPDPLPS  211 (633)
Q Consensus       201 g~IkIWDlr~~  211 (633)
                      |.|.+||+...
T Consensus       188 GLvnlfD~~~d  198 (376)
T KOG1188|consen  188 GLVNLFDTKKD  198 (376)
T ss_pred             ceEEeeecCCC
Confidence            99999999754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.34  E-value=1.9e-11  Score=126.11  Aligned_cols=194  Identities=14%  Similarity=0.222  Sum_probs=148.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl-~t~~-~~v~   75 (633)
                      ||++|+..+|++.....|.||.....+   ...++.. |...|++|+|+|..+ .|++|+.|..-+||.. .+++ .+..
T Consensus        17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~Wkptl   94 (361)
T KOG1523|consen   17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTL   94 (361)
T ss_pred             eecCCCceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccce
Confidence            689999999999999999999986654   5566664 778889999999987 7999999999999999 4333 2245


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-----EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-----CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-----~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      .+..++..++++.|+|..+.|++|+.-+.|.||-++....--     ...+...|.+++|+|++-.|++|+.|+.++||.
T Consensus        95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen   95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence            567899999999999999999999999999888876544321     124678899999999999999999999999985


Q ss_pred             CC-----CCC--------CceEEE-eec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          151 IR-----GKP--------QPLTVL-RAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       151 lr-----s~~--------k~v~~l-~~~-~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .-     ...        .|+-.+ ..+ ...+.|..+.|+|+|..|+-.            +.|..+.+-|.
T Consensus       175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv------------~Hds~v~~~da  235 (361)
T KOG1523|consen  175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV------------GHDSTVSFVDA  235 (361)
T ss_pred             EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe------------cCCCceEEeec
Confidence            42     111        111111 111 456889999999987776654            34666666554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=1.3e-10  Score=121.94  Aligned_cols=183  Identities=13%  Similarity=0.211  Sum_probs=137.7

Q ss_pred             EEEEEECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---cCCC
Q 006743            8 HLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---QHSA   82 (633)
Q Consensus         8 ~LaSgs~D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~---~H~~   82 (633)
                      ++|..+.+  ..+++++.+.+..++++.-  ...|-+|.++.+   .|+.+-.+. |+|||+.+.+. ++++.   .+..
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f--pt~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mkl-LhTI~t~~~n~~  130 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEIFF--PTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKL-LHTIETTPPNPK  130 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEEec--CCceEEEEEccc---eEEEEEccc-EEEEeccccee-ehhhhccCCCcc
Confidence            34444433  4589999988888888763  455677888865   466666544 99999998874 34433   3556


Q ss_pred             CeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCce
Q 006743           83 PTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPL  158 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGs-V~IWDlrs~~k~v  158 (633)
                      .+.++.++..+.+++.-+  ..|.|.+||..+-+.+..+ .|++.+.|++|+++|.+||+++..|+ |+||++.++.+..
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence            677777777777888643  4679999999999988888 69999999999999999999999998 8999999885443


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                       .++.-.....|.+++|+|++++|++.            +.-++|.||.+..
T Consensus       211 -eFRRG~~~~~IySL~Fs~ds~~L~~s------------S~TeTVHiFKL~~  249 (391)
T KOG2110|consen  211 -EFRRGTYPVSIYSLSFSPDSQFLAAS------------SNTETVHIFKLEK  249 (391)
T ss_pred             -eeeCCceeeEEEEEEECCCCCeEEEe------------cCCCeEEEEEecc
Confidence             34332335678999999977666554            5578888887754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.33  E-value=2.5e-11  Score=134.98  Aligned_cols=196  Identities=13%  Similarity=0.162  Sum_probs=146.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------   71 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--------   71 (633)
                      |+++++.+++-+..|..++|..++...  ...+..+|.+.|++|+|.|.|+ +|++.+.|.+-+|+-.-+.+        
T Consensus       324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaR  402 (764)
T KOG1063|consen  324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIAR  402 (764)
T ss_pred             EcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecc
Confidence            889999999999999999998433221  1122334777789999999988 77777777666554211000        


Q ss_pred             -------------------------ce-----------------------------------------------------
Q 006743           72 -------------------------PK-----------------------------------------------------   73 (633)
Q Consensus        72 -------------------------~~-----------------------------------------------------   73 (633)
                                               .+                                                     
T Consensus       403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G  482 (764)
T KOG1063|consen  403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG  482 (764)
T ss_pred             cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence                                     00                                                     


Q ss_pred             -----------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC
Q 006743           74 -----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDK-----KLYTYDPGSR  113 (633)
Q Consensus        74 -----------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DG-----tVrIWDlrtg  113 (633)
                                                         ++.+.+|...|++++.+|+++++|+++...     .|++|+..+.
T Consensus       483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W  562 (764)
T KOG1063|consen  483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW  562 (764)
T ss_pred             cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence                                               123678999999999999999999998654     6999999988


Q ss_pred             ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006743          114 RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKAE  191 (633)
Q Consensus       114 k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~-l~~~~H~~~VtsLafsPdg~~Las~s~~sd~  191 (633)
                      ..+..+ .|.-.|+.++|+|||++|++.+.|+++.+|........... -....|..-|....|+|            ++
T Consensus       563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p------------de  630 (764)
T KOG1063|consen  563 LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP------------DE  630 (764)
T ss_pred             hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc------------cc
Confidence            777644 79999999999999999999999999999988654322111 11236777778888777            56


Q ss_pred             eEEEEeeCCCeEEccCCCC
Q 006743          192 TALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       192 ~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .++++++.|++|++|....
T Consensus       631 ~~FaTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  631 KYFATASRDKKVKVWEEPD  649 (764)
T ss_pred             ceeEEecCCceEEEEeccC
Confidence            6677788999999997654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=9.4e-11  Score=135.05  Aligned_cols=197  Identities=17%  Similarity=0.251  Sum_probs=143.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC--CCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECC-C---CCcee
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTT-G---RSPKV   74 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~--~~~VssLaf-Spdg~~lLaSGs~DGtI~IWDl~-t---~~~~v   74 (633)
                      |+|-...++++...-.|+|||.+.++....|..+.  ...|+.+++ +.++..++++|+.||.|+||+-- .   ....+
T Consensus      1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred             ecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence            56667788888877899999999999888776533  456777776 44555689999999999999752 2   11122


Q ss_pred             EEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEec-CCCEEEEEEcCC
Q 006743           75 SWLKQ-------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFID-DDWILTAGTSNG  144 (633)
Q Consensus        75 ~~l~~-------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSP-dG~~LatGs~DG  144 (633)
                      ..+.+       -.+.-.-++|.....+|+++++-..|+|||......+.-+.  ....|+++.-+- .|++|++|..||
T Consensus      1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred             EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC
Confidence            22221       11112446888866677777778899999999888777764  344566665443 479999999999


Q ss_pred             eEEEEECCCCCC--ceEEEeecCCCCC--eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          145 RVVFYDIRGKPQ--PLTVLRACSSSEA--VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       145 sV~IWDlrs~~k--~v~~l~~~~H~~~--VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      .|++||.|....  .+...+  .|...  |..+.+.++|           -.-+++++.||.|++||+|..
T Consensus      1232 svRvyD~R~a~~ds~v~~~R--~h~~~~~Iv~~slq~~G-----------~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYR--EHNDVEPIVHLSLQRQG-----------LGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ceEEeecccCCccccceeec--ccCCcccceeEEeecCC-----------CcceeeeccCCeEEEEecccC
Confidence            999999997543  556666  56666  9999998853           225788899999999999985

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.29  E-value=7.5e-11  Score=133.06  Aligned_cols=199  Identities=18%  Similarity=0.180  Sum_probs=143.6

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCCce-----eEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCcee
Q 006743            2 YNCKD-EHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         2 FSpdG-~~LaSgs~DG~I~IWDl~tgk~-----v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      |+|.. .+|+.|+.+|.|.+||+..+..     +......|...|..+.|..+.. +-|++++.||.|+.|+++.-..++
T Consensus       250 f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~  329 (555)
T KOG1587|consen  250 FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV  329 (555)
T ss_pred             eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence            45544 5777788999999999987654     2334455788888899976532 248888999999999986443221


Q ss_pred             EEe----c-------cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeC---CCCc-----ee-eEeeCCCCeEEEEEecC
Q 006743           75 SWL----K-------QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDP---GSRR-----PS-SCITYEAPFSSLAFIDD  133 (633)
Q Consensus        75 ~~l----~-------~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDl---rtgk-----~v-~~i~h~~~ItsLafSPd  133 (633)
                      ...    .       .....+++++|.+ +...|+.|+++|.|..-+-   +...     .. ....|.++|+++.++|-
T Consensus       330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF  409 (555)
T KOG1587|consen  330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF  409 (555)
T ss_pred             hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence            110    1       1234689999999 8899999999998877433   3222     11 22358899999999998


Q ss_pred             CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          134 DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       134 G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +..++..+.|.+|+||.......|+..+.  .+...|++++|+|.           .-.+++++..||.+.+||++....
T Consensus       410 ~~k~fls~gDW~vriWs~~~~~~Pl~~~~--~~~~~v~~vaWSpt-----------rpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  410 YPKNFLSVGDWTVRIWSEDVIASPLLSLD--SSPDYVTDVAWSPT-----------RPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             ccceeeeeccceeEeccccCCCCcchhhh--hccceeeeeEEcCc-----------CceEEEEEcCCCceehhhhhcccc
Confidence            77666666699999999884445555554  56777999999995           334566677899999999986544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=7e-11  Score=124.22  Aligned_cols=166  Identities=16%  Similarity=0.198  Sum_probs=135.7

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC------CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 006743           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT------GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY  108 (633)
Q Consensus        35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~------t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIW  108 (633)
                      .|.+.|.+|.|+.+++ +|++|++|..++||.+.      ..+++...-..|...|.|++|+-....+++|..+++|...
T Consensus        54 ~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            3677899999999987 99999999999999984      2333222223455899999999988999999999999999


Q ss_pred             eCCCCceeeEeeCCC---CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          109 DPGSRRPSSCITYEA---PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       109 Dlrtgk~v~~i~h~~---~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      |+.+.+.+.++.|..   .|+.+..+|..+++++.+.+|.|.+||.+....+...+...........+.|+|..+     
T Consensus       133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P-----  207 (609)
T KOG4227|consen  133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP-----  207 (609)
T ss_pred             ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc-----
Confidence            999999998887655   899999999999999999999999999998766666666555667788999999643     


Q ss_pred             ccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          186 TTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       186 s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                            .++++.+..+-+.+||.|+..
T Consensus       208 ------~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  208 ------ALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             ------eeEEeccccCCCCceeecccc
Confidence                  345555667788999998643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.28  E-value=1.7e-11  Score=123.71  Aligned_cols=142  Identities=21%  Similarity=0.257  Sum_probs=113.3

Q ss_pred             EEEEEeCCCeEEEEECCCCCce---------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--cee--eE
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPK---------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPS--SC  118 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~---------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v--~~  118 (633)
                      ++++|-++|.|.+||+..+...         +.-...|..+|.++.+.+....=++|+.+..+..|.+...  .+.  ..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            5677888999999999876311         2334579999999999986666678888888999988643  221  12


Q ss_pred             e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006743          119 I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG  197 (633)
Q Consensus       119 i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg  197 (633)
                      + -....|..+.+.||++++|+++.|++|+||..++. +++.++.  .|...|.+++|+|+            ..+++.+
T Consensus       247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLk--yHsagvn~vAfspd------------~~lmAaa  311 (323)
T KOG0322|consen  247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLK--YHSAGVNAVAFSPD------------CELMAAA  311 (323)
T ss_pred             EEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhh--hhhcceeEEEeCCC------------Cchhhhc
Confidence            2 24456888999999999999999999999999998 6778888  79999999999995            4455666


Q ss_pred             eCCCeEEccCC
Q 006743          198 AVGDSILMPDP  208 (633)
Q Consensus       198 s~Dg~IkIWDl  208 (633)
                      +.|..|.+|++
T Consensus       312 skD~rISLWkL  322 (323)
T KOG0322|consen  312 SKDARISLWKL  322 (323)
T ss_pred             cCCceEEeeec
Confidence            88999999986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.8e-11  Score=132.79  Aligned_cols=188  Identities=18%  Similarity=0.322  Sum_probs=146.3

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      .|+.+|.||++...+   ..|.|+++...+...-|.. ..+.|.++.|+|... +|+.+.. ..|+|||+.... .+..+
T Consensus       528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqe-lvKkL  603 (733)
T KOG0650|consen  528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQE-LVKKL  603 (733)
T ss_pred             eeecCCceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCc-eEEEEec-cceEEEehhHHH-HHHHH
Confidence            488999999987654   4699999977766655653 456677899999987 5666554 789999998755 35666


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC---
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR---  152 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr---  152 (633)
                      ......|..++.+|.|..|+.++.|+.++.||+.-. ++.+.+ -|...+++|+|++.-..+++|+.||.+.||.-+   
T Consensus       604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence            677788999999999999999999999999999754 444444 589999999999999999999999999998433   


Q ss_pred             ---CCC--CceEEEeecCCCCC----eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcc
Q 006743          153 ---GKP--QPLTVLRACSSSEA----VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (633)
Q Consensus       153 ---s~~--k~v~~l~~~~H~~~----VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIW  206 (633)
                         .+.  .|++.+.  +|...    |..+.|+|...+|+            +++.|+.|++|
T Consensus       684 Dl~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLf------------sAGAd~tirlf  732 (733)
T KOG0650|consen  684 DLLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLF------------SAGADGTIRLF  732 (733)
T ss_pred             hhhcCCceEeeeecc--CceeecccceEeecccCCCceEE------------ecCCCceEEee
Confidence               221  2344454  66655    88999999666554            44679999988

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.27  E-value=1.4e-10  Score=121.65  Aligned_cols=145  Identities=18%  Similarity=0.277  Sum_probs=118.5

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCC--CCCcEEEEEEccCCCeEEEE-E-eCCCeEEEEECCCCCceeEEeccCC
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVT-A-GDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~--~~~~VssLafSpdg~~lLaS-G-s~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      .++|+++-.+ .|+|||+++.+.+..+...  +...+.++.++..+. +++- + ...|.|+|||+.+-+. +..+..|.
T Consensus        97 r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~  173 (391)
T KOG2110|consen   97 RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQP-VNTINAHK  173 (391)
T ss_pred             cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCc-eEEecCCCCCceEEEEEccccee-eeEEEecC
Confidence            4566666544 5999999999999887653  444566555555555 4443 2 2468999999988874 67788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           82 APTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGt-VrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      +.+-|++|+++|.+||++++.|+ ||++++.+|+.+..+.   ....|.+++|+|++.+|++.+..++|+||.+..
T Consensus       174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99999999999999999999995 7899999999998884   345689999999999999999999999998875

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.1e-09  Score=120.37  Aligned_cols=178  Identities=15%  Similarity=0.184  Sum_probs=122.5

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~   75 (633)
                      +|+|||++|+..+.+   ..|++||+.+++......  ....+....|+|+|+.++++...+|  .|++||+.++.  ..
T Consensus       205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~  280 (430)
T PRK00178        205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LS  280 (430)
T ss_pred             eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC--eE
Confidence            489999999876644   369999998876543221  2233445899999986666666666  58888998876  34


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC-C--eEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D-G--sV~IW  149 (633)
                      .+..+........|+||++.|+..+..   ..|+++|+.+++...............|+|||++|+....+ +  .|++|
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence            556666667778999999988776643   26888899887755443323334567899999999877653 3  58889


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~  187 (633)
                      |+.++.  ...+.   +........|+|+|+.++....
T Consensus       361 dl~tg~--~~~lt---~~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        361 DLQRGS--VRILT---DTSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             ECCCCC--EEEcc---CCCCCCCceECCCCCEEEEEEe
Confidence            998763  23333   2223335689999888876533

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=2.4e-10  Score=120.64  Aligned_cols=197  Identities=19%  Similarity=0.273  Sum_probs=151.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEecc
Q 006743            6 DEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v~~l~~   79 (633)
                      ...|++|-.+|.+.+|..+.+.    ....+.  ....+..|.-++...+++++|+..  ..+.|||+...+. +-.-+.
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKN  191 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKN  191 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeeccccee-eeeccC
Confidence            3467889999999999987443    333343  234556677777777788889998  8999999987642 211111


Q ss_pred             ---------CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC-ceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeE
Q 006743           80 ---------HSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSR-RPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRV  146 (633)
Q Consensus        80 ---------H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtg-k~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV  146 (633)
                               -.-.++++.|-+.  ...|++++.-+.|++||.+.+ +++..+. .+.+|.++...|+++.|++|..-|.+
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence                     1235678899886  889999999999999999974 5677774 67899999999999999999999999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (633)
Q Consensus       147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~  219 (633)
                      ..||++.++.....+.  +..+.|++|..+|+++++++|            +-|+.|+|+|+...........
T Consensus       272 ~~FD~r~~kl~g~~~k--g~tGsirsih~hp~~~~las~------------GLDRyvRIhD~ktrkll~kvYv  330 (412)
T KOG3881|consen  272 AKFDLRGGKLLGCGLK--GITGSIRSIHCHPTHPVLASC------------GLDRYVRIHDIKTRKLLHKVYV  330 (412)
T ss_pred             heecccCceeeccccC--CccCCcceEEEcCCCceEEee------------ccceeEEEeecccchhhhhhhh
Confidence            9999999854444444  778999999999966665554            7799999999987555444433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.5e-09  Score=120.75  Aligned_cols=176  Identities=14%  Similarity=0.175  Sum_probs=118.3

Q ss_pred             CccCCCCEEEEEECC-C--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISLS-G--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~D-G--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~   75 (633)
                      +|+|||++|+..+.+ +  .|++||+.+++......  ........+|+|+|+.++++...+|.  |++||+.+++  ..
T Consensus       224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~  299 (448)
T PRK04792        224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LT  299 (448)
T ss_pred             eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eE
Confidence            489999999876543 2  58999998876533221  12223457999999976667777775  7777887766  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGL-D--KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~-D--GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IW  149 (633)
                      .+..+...+...+|+||+++|+..+. +  ..|+++|+.+++..............+|+|||++|+..+. ++  .|.++
T Consensus       300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence            55666666788999999998877664 3  3688889888776544323333455789999999887655 34  46667


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      |+.++.  ...+..  . .......|+|+|+.|+..
T Consensus       380 dl~~g~--~~~lt~--~-~~d~~ps~spdG~~I~~~  410 (448)
T PRK04792        380 DLETGA--MQVLTS--T-RLDESPSVAPNGTMVIYS  410 (448)
T ss_pred             ECCCCC--eEEccC--C-CCCCCceECCCCCEEEEE
Confidence            877763  223321  1 122345799998887655

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.4e-10  Score=126.14  Aligned_cols=169  Identities=14%  Similarity=0.140  Sum_probs=117.5

Q ss_pred             CccCCCCEEEEEE-CCCcEEE--EECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASIS-LSGDLIL--HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs-~DG~I~I--WDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+|||++|+.+. .+|.+.|  ||+.+++. ..+.. +...+..+.|+|+|+.+++++..+|...||++.........+
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            5899999988765 6776554  56655554 44443 344566789999998666666678888888874332223333


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-CCC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG-KPQ  156 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs-~~k  156 (633)
                       .+..  .+.+|+|++++|+.++.++ +.+||+.+++....... .....+.|+|||++|+.++.+|.+.+|++.. ...
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~  406 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR  406 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence             3433  5678999999999888766 55699998876543322 2346788999999999999999888777532 113


Q ss_pred             ceEEEeecCCCCCeeEEEEccC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPd  178 (633)
                      ....+.  .|.+.+..++|+|-
T Consensus       407 ~~~~l~--~~~g~~~~p~wsp~  426 (429)
T PRK01742        407 FKARLP--GSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEcc--CCCCCCCCcccCCC
Confidence            334444  67788899999983

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=4.1e-11  Score=130.29  Aligned_cols=171  Identities=19%  Similarity=0.232  Sum_probs=130.3

Q ss_pred             EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEE
Q 006743           30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYT  107 (633)
Q Consensus        30 ~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrI  107 (633)
                      +++.+ |.+.|.|+.|+.+|. +|++|++|-.+.|||.-..+.....-.+|...|.++.|-|  +.+.+++|..|..|++
T Consensus        44 ~eL~G-H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTG-HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhcc-ccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            45555 778899999999998 9999999999999999877765566679999999999999  6778999999999999


Q ss_pred             EeCCCC----------ceeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCceE-------EEeecCCCC
Q 006743          108 YDPGSR----------RPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPLT-------VLRACSSSE  168 (633)
Q Consensus       108 WDlrtg----------k~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~v~-------~l~~~~H~~  168 (633)
                      +|+...          .....+ .|...|..++-.|++ +.+.++++||+|+-||+|....+-.       .......--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            999741          112222 478889999999988 8899999999999999997421111       011001123


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ...|+..+|.           +..+|+.|+.|--.++||.|...+
T Consensus       202 elk~ltisp~-----------rp~~laVGgsdpfarLYD~Rr~lk  235 (758)
T KOG1310|consen  202 ELKCLTISPS-----------RPYYLAVGGSDPFARLYDRRRVLK  235 (758)
T ss_pred             eeeeeeecCC-----------CCceEEecCCCchhhhhhhhhhcc
Confidence            3567777775           445566667799999999775544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.20  E-value=1.4e-11  Score=138.83  Aligned_cols=193  Identities=17%  Similarity=0.224  Sum_probs=139.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|...|.++++|+.|..|+||..+++.++..+.+ |...++.++.+.++- ++++++.|..|++|.+..+.+ +..+.+|
T Consensus       197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~p-vsvLrgh  273 (1113)
T KOG0644|consen  197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAP-VSVLRGH  273 (1113)
T ss_pred             eeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhh-hhhhcccCceEEEEecCCCch-HHHHhcc
Confidence            3677899999999999999999999999999998 556678899887765 899999999999999998885 7889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-----eeC--------------------------CCCeEEEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-----ITY--------------------------EAPFSSLA  129 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-----i~h--------------------------~~~ItsLa  129 (633)
                      ++.|++++|+|-.    +.+.||++++||.+-...+..     +..                          ...+.+++
T Consensus       274 tgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~  349 (1113)
T KOG0644|consen  274 TGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA  349 (1113)
T ss_pred             ccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh
Confidence            9999999999943    778999999999871100000     000                          11122333


Q ss_pred             EecCCC-----------EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743          130 FIDDDW-----------ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (633)
Q Consensus       130 fSPdG~-----------~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs  198 (633)
                      |....-           +.+++-.+-.+.+|++-++ ...+.+.  +|...+..+.++|-           +..+..+++
T Consensus       350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~--ghsd~~yvLd~Hpf-----------n~ri~msag  415 (1113)
T KOG0644|consen  350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLM--GHSDEVYVLDVHPF-----------NPRIAMSAG  415 (1113)
T ss_pred             hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhc--ccccceeeeeecCC-----------CcHhhhhcc
Confidence            333222           3333334556777887776 3334444  78899999999995           344455666


Q ss_pred             CCCeEEccCCCCCCCC
Q 006743          199 VGDSILMPDPLPSVTT  214 (633)
Q Consensus       199 ~Dg~IkIWDlr~~~~~  214 (633)
                      .||...|||+-...+.
T Consensus       416 ~dgst~iwdi~eg~pi  431 (1113)
T KOG0644|consen  416 YDGSTIIWDIWEGIPI  431 (1113)
T ss_pred             CCCceEeeecccCCcc
Confidence            7888888887654443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.19  E-value=2.2e-10  Score=118.33  Aligned_cols=157  Identities=11%  Similarity=0.207  Sum_probs=125.7

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-C
Q 006743           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-R  113 (633)
Q Consensus        37 ~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt-g  113 (633)
                      ...|+|.+|+++.. .++.+.....|.||...+..  ...+++..|...|++|+|+|..+.|++|+.|..-++|.... +
T Consensus        10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            46789999999987 78999999999999997665  34788999999999999999999999999999999999843 3


Q ss_pred             c--e-eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCC
Q 006743          114 R--P-SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCK  189 (633)
Q Consensus       114 k--~-v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~-v~~l~~~~H~~~VtsLafsPdg~~Las~s~~s  189 (633)
                      +  + +.++.+....+++.|+|.++.+++|+.-..|.||-.+....- +.......+...|++++|+|++          
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn----------  158 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN----------  158 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc----------
Confidence            2  2 234478999999999999999999999999999988765321 0111112567889999999954          


Q ss_pred             CCeEEEEeeCCCeEEcc
Q 006743          190 AETALLGGAVGDSILMP  206 (633)
Q Consensus       190 d~~lLlSgs~Dg~IkIW  206 (633)
                        .++..|+.|+.++|+
T Consensus       159 --VLlaaGs~D~k~rVf  173 (361)
T KOG1523|consen  159 --VLLAAGSTDGKCRVF  173 (361)
T ss_pred             --ceecccccCcceeEE
Confidence              445555667777766

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.17  E-value=5e-09  Score=108.43  Aligned_cols=147  Identities=14%  Similarity=0.229  Sum_probs=111.2

Q ss_pred             CCEEEEEECCCcEEEEECC-CCceeEEEeCCC-CCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCCCCc-eeEEeccCC
Q 006743            6 DEHLASISLSGDLILHNLA-SGAKAAELKDPN-EQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTGRSP-KVSWLKQHS   81 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~-tgk~v~~~~~~~-~~~VssLafSpdg~~lLaS-Gs~DGtI~IWDl~t~~~-~v~~l~~H~   81 (633)
                      .++|++. ..+.|+||... +.+.++.+.... ...+.+++=..+.. +||. |-.-|.|+|-|+..... .-..+..|.
T Consensus       104 r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~  181 (346)
T KOG2111|consen  104 RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHD  181 (346)
T ss_pred             CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEccc
Confidence            3445544 46789999987 455555554322 22343333222222 3333 55679999999976553 236788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           82 APTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGt-VrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      ..|.|++.+.+|.++|+++..|+ |||||..+|..+..+.   ....|+||+|+|+..+|++.+..|+|+||.++..
T Consensus       182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999999996 7999999999998884   4577999999999999999999999999998864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.15  E-value=9.8e-09  Score=106.31  Aligned_cols=179  Identities=9%  Similarity=0.129  Sum_probs=128.9

Q ss_pred             CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC--CCCeEEEEEcCCC
Q 006743           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH--SAPTAGISFSSDD   93 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H--~~~VtsLafSPdg   93 (633)
                      +.|.|||=...+++.++.  -...|.+|++.++   .|++.- .+.|+||.....-...+.+...  ...+.+++-.-+.
T Consensus        75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             ceEEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            479999965666777766  4577888999876   355443 5889999997544334444332  2334444333344


Q ss_pred             CEEEEE-eCCCeEEEEeCCCCce---eeEeeCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCceEEEeecCCCC
Q 006743           94 KIIASV-GLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPLTVLRACSSSE  168 (633)
Q Consensus        94 ~~LaSg-S~DGtVrIWDlrtgk~---v~~i~h~~~ItsLafSPdG~~LatGs~DGs-V~IWDlrs~~k~v~~l~~~~H~~  168 (633)
                      .+||.- -.-|.|.|.|+...+.   ..+.+|...|.|++++-+|..||+++..|+ |+|||..++.. +..++.-....
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~d~A  227 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQELRRGVDRA  227 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eeeeecCCchh
Confidence            455543 4568999999986554   555589999999999999999999999998 89999999854 44455445567


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .|++++|+|+..+|++.            +..|++.|+.++....
T Consensus       228 ~iy~iaFSp~~s~Lavs------------SdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVS------------SDKGTLHIFSLRDTEN  260 (346)
T ss_pred             eEEEEEeCCCccEEEEE------------cCCCeEEEEEeecCCC
Confidence            79999999976666554            6689999998876443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3.9e-09  Score=105.94  Aligned_cols=143  Identities=17%  Similarity=0.273  Sum_probs=113.0

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---   78 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLaf-Spdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~---   78 (633)
                      .|..+-++.++.|+.++.||+++|+...++++ |.+.|.++.- +..+  .+++|++||+++|||+++.+. +..+.   
T Consensus       123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~--qilsG~EDGtvRvWd~kt~k~-v~~ie~yk  198 (325)
T KOG0649|consen  123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANG--QILSGAEDGTVRVWDTKTQKH-VSMIEPYK  198 (325)
T ss_pred             ccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCc--ceeecCCCccEEEEeccccce-eEEecccc
Confidence            45667777888999999999999999999998 6677787776 4444  489999999999999998875 33332   


Q ss_pred             ------cC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           79 ------QH-SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        79 ------~H-~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                            .| ...|-+++.+  ..++++|+. ..+.+|.++..++..++...+++..+.|..  +.+++++..+.|.-|.+
T Consensus       199 ~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  199 NPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             ChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeee
Confidence                  22 2346666655  567777664 469999999999999999999999999974  47888888888999988


Q ss_pred             CCC
Q 006743          152 RGK  154 (633)
Q Consensus       152 rs~  154 (633)
                      ..-
T Consensus       274 ~Gv  276 (325)
T KOG0649|consen  274 NGV  276 (325)
T ss_pred             ccE
Confidence            753

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=8.7e-09  Score=113.93  Aligned_cols=161  Identities=16%  Similarity=0.190  Sum_probs=115.4

Q ss_pred             cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 006743           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs--~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~   94 (633)
                      .|++||. ++.....+.. +...+...+|+|+|+.++++..  .+..|++||+.++.  ...+..+.+.+.+.+|+|||+
T Consensus       183 ~l~~~d~-dg~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        183 RLAIMDQ-DGANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             EEEEECC-CCCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCC
Confidence            7889997 4555555554 4556778999999984444432  24689999998876  344556677788999999998


Q ss_pred             EEE-EEeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006743           95 IIA-SVGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE  168 (633)
Q Consensus        95 ~La-SgS~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H~~  168 (633)
                      .|+ +.+.++  .|++||+.+++......+.......+|+|||+.|+..+. +|  .|++||+.+.. . ..+.  .+.+
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~-~~lt--~~~~  334 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-P-RRIS--FGGG  334 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-e-EEee--cCCC
Confidence            875 455555  488889998877665556666778999999999887664 33  68888987652 2 2332  2345


Q ss_pred             CeeEEEEccCCCeEEEe
Q 006743          169 AVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~  185 (633)
                      .+....|+|+|++|+..
T Consensus       335 ~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             cccCeEECCCCCEEEEE
Confidence            56778999999888765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=2.1e-09  Score=118.87  Aligned_cols=168  Identities=16%  Similarity=0.170  Sum_probs=115.6

Q ss_pred             CccCCCCEEEEE-ECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASI-SLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSg-s~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~   75 (633)
                      +|+|||++|+.. +.+|  .|++||+.+++.... ..+ ...+....|+|+|+.++++...++.  |+++|+.++.  ..
T Consensus       249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~  324 (429)
T PRK03629        249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQ  324 (429)
T ss_pred             EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eE
Confidence            489999988865 4455  599999987765443 322 2345668999999855555544554  4445666655  33


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCe---EEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR---VVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGs---V~IW  149 (633)
                      .+..+...+.+.+|+|||++|+..+.+   ..|++||+.+++..... .........|+|||++|+.++.++.   ++++
T Consensus       325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            444444556788999999999887654   36889999888754433 2233456889999999999887764   7788


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      ++....  ...+.  .|.+.+...+|+|
T Consensus       404 ~~~G~~--~~~l~--~~~~~~~~p~Wsp  427 (429)
T PRK03629        404 STDGRF--KARLP--ATDGQVKFPAWSP  427 (429)
T ss_pred             ECCCCC--eEECc--cCCCCcCCcccCC
Confidence            886542  23333  5778889999987

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=1.9e-09  Score=124.79  Aligned_cols=188  Identities=14%  Similarity=0.192  Sum_probs=148.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEE---EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV---LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vss---LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      +.+.++.++.++.+.+||...+....++.........+   +.++++. -++++|+.-+.|.+|+....+..+ .+.+|.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~-~l~GHe  175 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI-RLKGHE  175 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc-eecccC
Confidence            46788899999999999998887777776433322222   2234443 378999999999999997544333 688999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~--~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      +.|..+.|+-||.+++++++|+++++|++.+.+...  .++|...+..++|.|.  .+++++.|.+.++|+.+...  +.
T Consensus       176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~  251 (967)
T KOG0974|consen  176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LE  251 (967)
T ss_pred             CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--eh
Confidence            999999999999999999999999999999987664  4589999999999988  99999999999999776542  22


Q ss_pred             EEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          160 VLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       160 ~l~~~~H~-~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .+.  +|. ..|..++..+            +....++++.|+.+++||+.-..
T Consensus       252 ~y~--~h~g~~iw~~~~~~------------~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  252 VYD--EHSGKGIWKIAVPI------------GVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             hhh--hhhhcceeEEEEcC------------CceEEEeeccCcchhhhhhhccc
Confidence            333  443 4578888776            66777888899999999986543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.11  E-value=1.9e-10  Score=123.45  Aligned_cols=208  Identities=17%  Similarity=0.188  Sum_probs=158.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |-|.--+|++++..|.+.--|+.+|+.+..+.. ..+.+..++-+|-+. ++-+|...|+|.+|.-...++.+ .+..|.
T Consensus       217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skePLv-KiLcH~  293 (545)
T KOG1272|consen  217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEPLV-KILCHR  293 (545)
T ss_pred             ccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccc-eEEEcCCCceEEecCCCCcchHH-HHHhcC
Confidence            334445678889999999999999999988875 345677789999887 89999999999999998888654 456799


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC-CCCC-CceE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI-RGKP-QPLT  159 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl-rs~~-k~v~  159 (633)
                      ++|.+|++.++|+++++.+.|..|+|||+|.-..+..+....+...++++..|  +++.+....|.||.- -... ....
T Consensus       294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~  371 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGET  371 (545)
T ss_pred             CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCc
Confidence            99999999999999999999999999999987766655446677888888554  444455567999942 2211 1112


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      .+-.+...+.|..+.|+|-...|..+....-..+|+-|+.+-..--|...||..+
T Consensus       372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetr  426 (545)
T KOG1272|consen  372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETR  426 (545)
T ss_pred             chhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhh
Confidence            2222234568999999998888887766556677888888877777777666653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.11  E-value=5.3e-09  Score=115.30  Aligned_cols=199  Identities=17%  Similarity=0.101  Sum_probs=150.3

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCC--CCCcEEEEEEc------c-------------CCCeEEEEEeCCCe
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYS------R-------------NSRHLLVTAGDDGT   61 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~--~~~~VssLafS------p-------------dg~~lLaSGs~DGt   61 (633)
                      .+-+.++|....||.++|||...++...+|...  ..+...+.+|.      |             .+...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            455679999999999999999999887777531  23334445553      1             12336888889999


Q ss_pred             EEEEECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEE
Q 006743           62 LHLWDTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        62 I~IWDl~t~~~~v~~l-~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~Lat  139 (633)
                      |.+|++..++...... ..|.+.|+++.++.+-..|.+++.|+.+.+|+...++.++... ....+.+++++|||.++++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            9999999888433333 4799999999999999999999999999999999998887774 5667999999999999998


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEE-EeeCCCeEEccCCCCCCC
Q 006743          140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALL-GGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLl-Sgs~Dg~IkIWDlr~~~~  213 (633)
                      ++  +.|.+||+++++ .+..+.  +|.++|.++.|-.+    +   ....+.+++ +...+..+.+|-+.....
T Consensus       162 as--~~ik~~~~~~ke-vv~~ft--gh~s~v~t~~f~~~----~---~g~~G~~vLssa~~~r~i~~w~v~~~~k  224 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKE-VVITFT--GHGSPVRTLSFTTL----I---DGIIGKYVLSSAAAERGITVWVVEKEDK  224 (541)
T ss_pred             cc--ceEEEEEccCce-EEEEec--CCCcceEEEEEEEe----c---cccccceeeeccccccceeEEEEEcccc
Confidence            86  689999999983 344444  99999999999764    0   111233333 344477788886665333

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.11  E-value=4.1e-10  Score=113.95  Aligned_cols=143  Identities=21%  Similarity=0.380  Sum_probs=112.1

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEe---------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--Ccee-E
Q 006743            8 HLASISLSGDLILHNLASGAKAAELK---------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKV-S   75 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~---------~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~--~~~v-~   75 (633)
                      +|++|-.+|.|.+||+.++..+..++         ..|.+.|..+.|.+.-. .=++|+.+..+.+|.+...  ...+ .
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccc
Confidence            45567789999999999875443332         13667788888876533 3457777888999988543  2111 1


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      .+.-.+..|..+.+-||++.+++++.|+.||||..++.+++..+. |.+.|++++|+|+...+|.++.|++|.+|++
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            222233568899999999999999999999999999999998884 8899999999999999999999999999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=1.8e-09  Score=114.01  Aligned_cols=166  Identities=12%  Similarity=0.139  Sum_probs=132.6

Q ss_pred             EEEEEECC--CcEEEEECCCCceeEEEeCCCC--------CcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743            8 HLASISLS--GDLILHNLASGAKAAELKDPNE--------QVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         8 ~LaSgs~D--G~I~IWDl~tgk~v~~~~~~~~--------~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~~~v~~   76 (633)
                      .+++||..  ..+.|||++..+.+..-++-..        -.++++.|.+. ..+.|+++..-++|++||.+.+..++..
T Consensus       163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~  242 (412)
T KOG3881|consen  163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ  242 (412)
T ss_pred             eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence            45668888  8899999988866655443222        23556777765 1347999999999999999988878888


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      +.-...+|.++...|+++.|++|..-+.+..||++.++.... + +..+.|.++..+|...+|++++-|+.|+|+|+.+.
T Consensus       243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            888889999999999999999999999999999999988766 3 57899999999999999999999999999999985


Q ss_pred             CCceEEEeecCCCCCeeEEEEcc
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      +-..+++    -...+++|-+.+
T Consensus       323 kll~kvY----vKs~lt~il~~~  341 (412)
T KOG3881|consen  323 KLLHKVY----VKSRLTFILLRD  341 (412)
T ss_pred             hhhhhhh----hhccccEEEecC
Confidence            3222222    234566666544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.08  E-value=4.4e-09  Score=116.65  Aligned_cols=192  Identities=11%  Similarity=0.164  Sum_probs=136.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce--------eEEE--e--------------------------CCCCCcEEEEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAK--------AAEL--K--------------------------DPNEQVLRVLD   44 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~--------v~~~--~--------------------------~~~~~~VssLa   44 (633)
                      ||+.||+++|+|+.|..|.+|+.+-...        ++..  .                          ......+.++.
T Consensus        60 Ays~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~Cs  139 (1081)
T KOG1538|consen   60 AYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCS  139 (1081)
T ss_pred             EEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEee
Confidence            6899999999999999999998642111        1100  0                          00122345567


Q ss_pred             EccCCCeEEEEEeCCCeEEEEECCCCCce-eEEeccCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEeCCCCceeeE
Q 006743           45 YSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSSD-----DKIIASVGLDKKLYTYDPGSRRPSSC  118 (633)
Q Consensus        45 fSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~H~~~VtsLafSPd-----g~~LaSgS~DGtVrIWDlrtgk~v~~  118 (633)
                      |..||. +|+.|-.||+|.|-+..+.... +....+.+.+|++++|+|.     ...+++.....++.+|.+.....-..
T Consensus       140 WtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~  218 (1081)
T KOG1538|consen  140 WTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD  218 (1081)
T ss_pred             ecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc
Confidence            777787 8999999999999876554422 2223356789999999983     24788888888998888864333223


Q ss_pred             eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743          119 ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (633)
Q Consensus       119 i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs  198 (633)
                      -..+-...|+.+.++|.+++.|+.|+.+++|.-+.-  .+.++.  ....+|+.++..|++++++.            |+
T Consensus       219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv--rLGTvg--~~D~WIWtV~~~PNsQ~v~~------------GC  282 (1081)
T KOG1538|consen  219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV--RLGTVG--EQDSWIWTVQAKPNSQYVVV------------GC  282 (1081)
T ss_pred             ccCCCCchhheeccCCcEEEEccCCCceEEEeecCe--EEeecc--ccceeEEEEEEccCCceEEE------------EE
Confidence            345566788999999999999999999999975542  122222  35679999999997665544            46


Q ss_pred             CCCeEEccCCC
Q 006743          199 VGDSILMPDPL  209 (633)
Q Consensus       199 ~Dg~IkIWDlr  209 (633)
                      .||+|..|++-
T Consensus       283 qDGTiACyNl~  293 (1081)
T KOG1538|consen  283 QDGTIACYNLI  293 (1081)
T ss_pred             ccCeeehhhhH
Confidence            79999888774

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.07  E-value=2.8e-10  Score=117.87  Aligned_cols=138  Identities=14%  Similarity=0.165  Sum_probs=109.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      .|+|+|+++|++..- .+.|-|.++-+..+.+.. - +.|.-+.|..+..++|+....|+.|.+|++...+. ...+...
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-l-dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIdeg   90 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-L-DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDEG   90 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-H-HHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEeccC
Confidence            489999999999765 888999888776655442 2 33444899999888888889999999999988774 3456677


Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc
Q 006743           81 SAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        81 ~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~  142 (633)
                      ...+..++|+|||++|+ +...|-.|.+|.+.+.+.....-.+..+..++|+|||++.+..+.
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence            78899999999996655 555688999999998877665545666799999999999887765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=6.4e-09  Score=115.01  Aligned_cols=168  Identities=18%  Similarity=0.205  Sum_probs=112.9

Q ss_pred             CccCCCCEEEE-EECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743            1 MYNCKDEHLAS-ISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaS-gs~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~   75 (633)
                      +|+|||++|+. .+.+|  .|++||+.+++.. .+.. +......++|+|+++.++++...+|.  |+++|+.++..  .
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~  329 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--E  329 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--E
Confidence            48999998764 45555  5999999877643 3433 33344568999999855555555555  66667766652  3


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW  149 (633)
                      .+..+......++|+|+|++|+..+.++   .|++||+.+++.. .+.+........|+|||++|+....+   +.|+++
T Consensus       330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~  408 (433)
T PRK04922        330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAV  408 (433)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            3333444556789999999998876543   6999999888765 33444455677999999988876653   458888


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      |+....  ...+.  .+.+.+..++|+|
T Consensus       409 ~~~g~~--~~~l~--~~~g~~~~p~wsp  432 (433)
T PRK04922        409 STDGRV--RQRLV--SADGEVREPAWSP  432 (433)
T ss_pred             ECCCCc--eEEcc--cCCCCCCCCccCC
Confidence            886542  23333  3456677777776

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=3.7e-09  Score=115.96  Aligned_cols=197  Identities=17%  Similarity=0.229  Sum_probs=136.2

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCceeEE---------E-------------e------CC------C----CCcEEE
Q 006743            2 YNCKDEHL-ASISLSGDLILHNLASGAKAAE---------L-------------K------DP------N----EQVLRV   42 (633)
Q Consensus         2 FSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~---------~-------------~------~~------~----~~~Vss   42 (633)
                      .+|||+|+ |+|...-.|++||+....+-.+         |             +      -|      +    ....++
T Consensus        59 ~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRD  138 (703)
T KOG2321|consen   59 VSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRD  138 (703)
T ss_pred             ecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCcc
Confidence            47899976 5666788999999965322110         0             0      00      0    001122


Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--
Q 006743           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--  120 (633)
Q Consensus        43 LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--  120 (633)
                      ++++.-... |+.++....|+-++++.+.. +.-+....+.+++|..++-+.+|++|+.||.|-.||.|+...+..+.  
T Consensus       139 m~y~~~scD-ly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  139 MKYHKPSCD-LYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             ccccCCCcc-EEEeecCcceEEEEcccccc-ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence            333322221 45555566788888887763 44555566899999999988999999999999999999877665553  


Q ss_pred             -----CCC-----CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          121 -----YEA-----PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       121 -----h~~-----~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                           +.+     .|+++.|+.+|-.+++|+.+|.|+|||+|... |+. +..++..-+|..+.|.+.          ++
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~-~kdh~~e~pi~~l~~~~~----------~~  284 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-PLL-VKDHGYELPIKKLDWQDT----------DQ  284 (703)
T ss_pred             cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-cee-ecccCCccceeeeccccc----------CC
Confidence                 222     39999999999999999999999999999974 333 333466788999999874          23


Q ss_pred             CeEEEEeeCCCeEEccCCCCCCC
Q 006743          191 ETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ...+++.. ...++|||-....+
T Consensus       285 q~~v~S~D-k~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  285 QNKVVSMD-KRILKIWDECTGKP  306 (703)
T ss_pred             CceEEecc-hHHhhhcccccCCc
Confidence            33444433 67899999865544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=6.9e-09  Score=118.54  Aligned_cols=182  Identities=15%  Similarity=0.202  Sum_probs=136.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC--C-ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS--G-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t--g-k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      ++||+++++|+|..||.|.+|.--.  . +..+.+..-|...|.++.|+++|. +|++|+..|.+.+|.+.+++  .+.+
T Consensus       212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~--kqfL  288 (792)
T KOG1963|consen  212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGK--KQFL  288 (792)
T ss_pred             EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCC--cccc
Confidence            4799999999999999999996322  1 122222222556788999999998 89999999999999999888  4667


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee------------CCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~------------h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                      ..-..+|..+.++||+.+.+.+..|+.|.+....+......+.            ..+-.+.++++|.-+.++..+..|.
T Consensus       289 PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~  368 (792)
T KOG1963|consen  289 PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH  368 (792)
T ss_pred             cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence            8888999999999999999999999999998876544433331            2344678899997788888899999


Q ss_pred             EEEEECCCCCCceEEEee--cC------CCCCeeEEEEccCCCeEEEe
Q 006743          146 VVFYDIRGKPQPLTVLRA--CS------SSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~--~~------H~~~VtsLafsPdg~~Las~  185 (633)
                      |.+||+-+.....+....  ..      +.-.++.++.+..|.++++.
T Consensus       369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~  416 (792)
T KOG1963|consen  369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL  416 (792)
T ss_pred             EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence            999999876443222111  11      22335666666667766654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.06  E-value=2.9e-09  Score=120.35  Aligned_cols=188  Identities=13%  Similarity=0.178  Sum_probs=133.8

Q ss_pred             CEEEEEECCCcEEEEECCCCceeE------EEe-----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---
Q 006743            7 EHLASISLSGDLILHNLASGAKAA------ELK-----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---   72 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~------~~~-----~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~---   72 (633)
                      .-+++++.||.|..|++..-....      ...     ......+.+++|.+...+.|+.|.++|.|+--+-.+...   
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            458899999999999875432210      011     112345678999998888899999999998844322221   


Q ss_pred             ----eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCC
Q 006743           73 ----KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG-SRRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNG  144 (633)
Q Consensus        73 ----~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlr-tgk~v~~i-~h~~~ItsLafSPd-G~~LatGs~DG  144 (633)
                          .+.....|.+.|+++.++| ..+.|++++ |.+|+||... ...++..+ .+...+++++|+|. -..++++..||
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence                1335567889999999999 555566666 9999999987 55555544 45666999999995 46788888899


Q ss_pred             eEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          145 RVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       145 sV~IWDlrs~~-k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .|.|||+.... .|+....  .+....+.+.|+++|+.|+++            ...|.+.+|++.
T Consensus       465 ~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavG------------d~~G~~~~~~l~  516 (555)
T KOG1587|consen  465 NLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVG------------DANGTTHILKLS  516 (555)
T ss_pred             ceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEe------------cCCCcEEEEEcC
Confidence            99999998642 3443333  335667777787766655554            668889999885

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.05  E-value=7.3e-09  Score=121.43  Aligned_cols=196  Identities=13%  Similarity=0.156  Sum_probs=135.2

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-e--
Q 006743            4 CKDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-K--   73 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-~--   73 (633)
                      +++.++++|+.||+|++||...-.       ...++. ..+..+.++...+.++ .+|.++.||.|++.++..... .  
T Consensus      1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred             CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccce
Confidence            456899999999999999986321       112222 1456788888888887 788899999999999965221 1  


Q ss_pred             ---eEEeccC--CCCeEEEEEcC-CCC-EEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcC
Q 006743           74 ---VSWLKQH--SAPTAGISFSS-DDK-IIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        74 ---v~~l~~H--~~~VtsLafSP-dg~-~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~D  143 (633)
                         .+....+  ...|..-+|.. ... .++.+..-+.|..||+++......+.   ..+.|++++.+|.+.++++|+..
T Consensus      1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred             eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC
Confidence               1111222  22334445544 344 78888889999999999876555443   46889999999999999999999


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee-CCCeEEccCCCCC
Q 006743          144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLPS  211 (633)
Q Consensus       144 GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs-~Dg~IkIWDlr~~  211 (633)
                      |.+.+||+|-+ .++..++. .+..+|..++.+|--+        .....+.++. ..+.|.+|++...
T Consensus      1217 G~l~lWDLRF~-~~i~sw~~-P~~~~i~~v~~~~~~~--------~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1217 GQLVLWDLRFR-VPILSWEH-PARAPIRHVWLCPTYP--------QESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ceEEEEEeecC-ceeecccC-cccCCcceEEeeccCC--------CCceEEEecccCCCceeeeecccC
Confidence            99999999976 45555553 4558888888887422        0122222233 4667777777544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.04  E-value=1.7e-09  Score=117.94  Aligned_cols=93  Identities=20%  Similarity=0.237  Sum_probs=80.6

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS  117 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~  117 (633)
                      ..|..++|+|||+ +||+.+.||.++|+|..+.+. +-..+..-+...|++|+|||++|++|++|..|.||.+..++.+.
T Consensus       291 g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  291 GSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             ccccceeEcCCCc-eEEEEecCceEEEeeccHHHH-HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence            3577789999998 899999999999999988763 33445555789999999999999999999999999999988876


Q ss_pred             Ee-eCCCCeEEEEEec
Q 006743          118 CI-TYEAPFSSLAFID  132 (633)
Q Consensus       118 ~i-~h~~~ItsLafSP  132 (633)
                      .- +|+.+|..|+|+|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            54 7999999999984

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=4.9e-08  Score=108.16  Aligned_cols=179  Identities=14%  Similarity=0.116  Sum_probs=110.9

Q ss_pred             CccCCCCEEE---EEECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCC-
Q 006743            1 MYNCKDEHLA---SISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGR-   70 (633)
Q Consensus         1 AFSpdG~~La---Sgs~D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~-   70 (633)
                      +|+|||+.++   +...+  ..|++.++.+++......  ........+|+|||+.++++...+|    .+.+|++..+ 
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~  268 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA  268 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec--CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence            5999998532   33333  358888988776433222  1222345799999986666654433    4455777542 


Q ss_pred             -CceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEeCCC-CceeeEe-eCCCCeEEEEEecCCCEEEEEEcC-
Q 006743           71 -SPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKK--LYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSN-  143 (633)
Q Consensus        71 -~~~v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGt--VrIWDlrt-gk~v~~i-~h~~~ItsLafSPdG~~LatGs~D-  143 (633)
                       .........+.......+|+|||+.|+..+ .++.  |+++++.. +.....+ .....+...+|+|||++|+....+ 
T Consensus       269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~  348 (428)
T PRK01029        269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK  348 (428)
T ss_pred             CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence             111222223334456789999999888766 4554  55555542 2223333 344567889999999998876543 


Q ss_pred             --CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          144 --GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       144 --GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                        ..|++||+.+++.  ..+.  .....+....|+|+|+.|+..
T Consensus       349 g~~~I~v~dl~~g~~--~~Lt--~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        349 GVRQICVYDLATGRD--YQLT--TSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             CCcEEEEEECCCCCe--EEcc--CCCCCccceEECCCCCEEEEE
Confidence              4699999987742  2232  223456789999998887654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=1.3e-09  Score=117.72  Aligned_cols=183  Identities=16%  Similarity=0.209  Sum_probs=138.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCC--ceeEEec
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRS--PKVSWLK   78 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~   78 (633)
                      |+..|..|++|+.|..|.+||+..++....+...|...|.-.+|-|. +...+++++.||+|++=.+....  .....+.
T Consensus       150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~  229 (559)
T KOG1334|consen  150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA  229 (559)
T ss_pred             ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence            78889999999999999999999999888888777665555678775 33469999999999998874332  2245677


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCC---CeEEEEEecCCC-EEEEEEcCCeEEEE
Q 006743           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEA---PFSSLAFIDDDW-ILTAGTSNGRVVFY  149 (633)
Q Consensus        79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~---~ItsLafSPdG~-~LatGs~DGsV~IW  149 (633)
                      .|.+.|+-++.-| ..+.|.+++.|+.+.-+|++.+.+...+    .+..   ....++.+|.+. .+++|+.|-.+++|
T Consensus       230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY  309 (559)
T KOG1334|consen  230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY  309 (559)
T ss_pred             cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence            8999999999999 7788999999999999999987654433    2333   577899999664 88999999999999


Q ss_pred             ECCCCCCc-----eEEEeec----CCCCCeeEEEEccCCCeEEE
Q 006743          150 DIRGKPQP-----LTVLRAC----SSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       150 Dlrs~~k~-----v~~l~~~----~H~~~VtsLafsPdg~~Las  184 (633)
                      |.+...+.     +..+.-.    ...-.|+|++|+.++.-+++
T Consensus       310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa  353 (559)
T KOG1334|consen  310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA  353 (559)
T ss_pred             cccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence            99863221     1111100    23456899999965544433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=1.3e-09  Score=115.93  Aligned_cols=154  Identities=23%  Similarity=0.298  Sum_probs=111.2

Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee
Q 006743           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT  120 (633)
Q Consensus        41 ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~  120 (633)
                      .+++|+.+|. .+++|+.||+++||+...... +.....|...|.++.|+||++.|++.+.| ..+|||.+++..+....
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            5689999998 899999999999999876663 45567889999999999999999999999 89999999997666553


Q ss_pred             ---CCCCeEEEEEecCC---CE-EE-EEEcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          121 ---YEAPFSSLAFIDDD---WI-LT-AGTSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       121 ---h~~~ItsLafSPdG---~~-La-tGs~DGsV~IWDlrs~~k--~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                         ....+..+.|..|+   .+ ++ ....-+.|+.||+.....  ..+..+...-...|++++.+.+|++++.+     
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG-----  299 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG-----  299 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe-----
Confidence               34456777888776   22 22 233345677766653221  11111112334679999999987777665     


Q ss_pred             CeEEEEeeCCCeEEccCCC
Q 006743          191 ETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIWDlr  209 (633)
                             +.||.|-|++..
T Consensus       300 -------T~dGsVai~~~~  311 (398)
T KOG0771|consen  300 -------TMDGSVAIYDAK  311 (398)
T ss_pred             -------ccCCcEEEEEec
Confidence                   456666666654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.02  E-value=5.8e-08  Score=105.70  Aligned_cols=160  Identities=13%  Similarity=0.157  Sum_probs=110.4

Q ss_pred             cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC---CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCC
Q 006743           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD   93 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D---GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg   93 (633)
                      .|.++|.. +.....+.. +...+...+|+|+++. |+.+..+   ..|++||+.++..  ..+..+...+.+++|+||+
T Consensus       171 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       171 ELQVADYD-GANPQTITR-SREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDG  245 (417)
T ss_pred             eEEEEcCC-CCCCEEeec-CCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence            58888874 444444544 3445667899999984 5544432   4799999988762  3344566677889999999


Q ss_pred             CEEEEE-eCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCCC
Q 006743           94 KIIASV-GLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSSS  167 (633)
Q Consensus        94 ~~LaSg-S~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D-G--sV~IWDlrs~~k~v~~l~~~~H~  167 (633)
                      +.|+.. +.++  .|++||+.+++......+.......+|+|||++|+..+.. +  .|++||+.+.+  ...+.  .+.
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~--~~~  321 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLT--FRG  321 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEee--cCC
Confidence            877654 4444  6999999988765555555555678999999988876543 3  58888887653  22232  345


Q ss_pred             CCeeEEEEccCCCeEEEe
Q 006743          168 EAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       168 ~~VtsLafsPdg~~Las~  185 (633)
                      ..+..+.|+|+|++++..
T Consensus       322 ~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       322 GYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             CCccCeEECCCCCEEEEE
Confidence            667788999988777665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=3.4e-08  Score=109.19  Aligned_cols=177  Identities=10%  Similarity=0.065  Sum_probs=111.2

Q ss_pred             CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCC
Q 006743           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD   93 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg   93 (633)
                      ..|.++|. ++.....+.. +...+...+|+|+|+.++++...+  ..|++||+.+++.  ..+....+.+.+.+|+||+
T Consensus       176 ~~L~~~D~-dG~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECC-CCCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence            36777786 4555455543 445677799999998444443333  4699999988763  3344444567789999999


Q ss_pred             CEEE-EEeCCCeEE--EEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CCeEEEEEC--CCCCCceEEEeecCCC
Q 006743           94 KIIA-SVGLDKKLY--TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDI--RGKPQPLTVLRACSSS  167 (633)
Q Consensus        94 ~~La-SgS~DGtVr--IWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DGsV~IWDl--rs~~k~v~~l~~~~H~  167 (633)
                      +.|+ +.+.++...  ++|+..+.......+........|+|||+.|+..+. +|...||.+  .++.  ...+..  +.
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~--~g  327 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTF--TG  327 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEec--CC
Confidence            9886 456777644  455655554443344555677899999998886554 455566654  4432  222221  22


Q ss_pred             CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       168 ~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ......+|+|+|++|+......         .+..|.+||+.
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~---------g~~~I~v~d~~  360 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVG---------GAFKLYVQDLA  360 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccC---------CcEEEEEEECC
Confidence            3345688999998887652211         12357777764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=1.1e-07  Score=105.18  Aligned_cols=191  Identities=15%  Similarity=0.096  Sum_probs=126.0

Q ss_pred             CccCCCCE-EEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCcee
Q 006743            1 MYNCKDEH-LASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpdG~~-LaSgs~---DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v   74 (633)
                      .|+|||+. ++..+.   +..|+++|+.+++......  ....+....|+|||+.++++.+.+  ..|+++|+.++.  .
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~--~  269 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT--L  269 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc--E
Confidence            48999985 654443   3569999998887654443  334455678999998777776655  468888887776  3


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC--------
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN--------  143 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~D-G--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D--------  143 (633)
                      ..+..+........|+|||+.|+..+.. +  .|+++|+.+++..+.......  ...|+|||++|+.....        
T Consensus       270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~  347 (419)
T PRK04043        270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN  347 (419)
T ss_pred             EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence            4444444434556899999988777643 2  689999988776554432222  24899999998876643        


Q ss_pred             -CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe
Q 006743          144 -GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS  202 (633)
Q Consensus       144 -GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~  202 (633)
                       ..|++.|+.++.  .+.+..   ........|+|||+.|+......+...|..-..|+.
T Consensus       348 ~~~I~v~d~~~g~--~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        348 TFNLYLISTNSDY--IRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CcEEEEEECCCCC--eEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence             368888988763  233332   223446899999998877654444444444444443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=2.5e-08  Score=110.51  Aligned_cols=174  Identities=18%  Similarity=0.204  Sum_probs=112.0

Q ss_pred             CccCCCCEEEEEEC-CC--cEE--EEECCCC--ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCC
Q 006743            1 MYNCKDEHLASISL-SG--DLI--LHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRS   71 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG--~I~--IWDl~tg--k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW--Dl~t~~   71 (633)
                      +|+|||++|+.... +|  .++  +|++..+  .....+...........+|+|||+.++++...+|...||  ++....
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g  316 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG  316 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence            48999998887653 23  344  4676543  222333322223334579999999656666567755555  443222


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc---CCe
Q 006743           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGR  145 (633)
Q Consensus        72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~---DGs  145 (633)
                      .....+..+...+....|+|||++|+..+.+   ..|++||+.+++..........+....|+|||++|+....   ...
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~  396 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE  396 (428)
T ss_pred             cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce
Confidence            1234455555677889999999999877654   3799999998887655444456788999999998875443   356


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPd  178 (633)
                      |++||+.+++ . ..+.  ...+.+...+|+|-
T Consensus       397 L~~vdl~~g~-~-~~Lt--~~~g~~~~p~Ws~~  425 (428)
T PRK01029        397 LYLISLITKK-T-RKIV--IGSGEKRFPSWGAF  425 (428)
T ss_pred             EEEEECCCCC-E-EEee--cCCCcccCceecCC
Confidence            8899998763 2 2222  23455677888773

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=2.8e-08  Score=104.39  Aligned_cols=206  Identities=13%  Similarity=0.171  Sum_probs=132.6

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCC----c--------eeEEEeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEE
Q 006743            1 MYNCKDE-HLASISLSGDLILHNLASG----A--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWD   66 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl~tg----k--------~v~~~~~~~~~~VssLafSpdg~~lLaSGs-~DGtI~IWD   66 (633)
                      ||-|.+. .|++|+. +-|.||.....    .        ....++......|+.+.|++||. .+++++ .|..|.|||
T Consensus       147 awRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWd  224 (445)
T KOG2139|consen  147 AWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWD  224 (445)
T ss_pred             EeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEc
Confidence            4666654 5666664 45899976421    1        11223333346789999999998 666666 577899999


Q ss_pred             CCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           67 TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        67 l~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl-rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                      ..++... .......+.+.-+.|+||+.+|+.+.-|+..++|.. ++....+..-..+.|...+|+|+|.+|+.... |.
T Consensus       225 pdtg~~~-pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gs  302 (445)
T KOG2139|consen  225 PDTGQKI-PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GS  302 (445)
T ss_pred             CCCCCcc-cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CC
Confidence            9887743 222344577889999999999999999999999954 44455555555669999999999988775543 22


Q ss_pred             EEEEECCCCCCc-----------eEEEee------c----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743          146 VVFYDIRGKPQP-----------LTVLRA------C----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (633)
Q Consensus       146 V~IWDlrs~~k~-----------v~~l~~------~----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik  204 (633)
                      -++|.+.-..++           +..+..      .    -..+.+.+++|+|.|.+++....  +...+..  ....|.
T Consensus       303 p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK--g~~~v~~--~k~~i~  378 (445)
T KOG2139|consen  303 PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK--GQSFVLL--CKLHIS  378 (445)
T ss_pred             ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc--CCchhhh--hhhhhh
Confidence            334433211110           000000      0    12577899999999999987622  2221111  135677


Q ss_pred             ccCCCCCCCC
Q 006743          205 MPDPLPSVTT  214 (633)
Q Consensus       205 IWDlr~~~~~  214 (633)
                      +||.+...+.
T Consensus       379 ~fdtr~sp~v  388 (445)
T KOG2139|consen  379 RFDTRKSPPV  388 (445)
T ss_pred             hhcccccCce
Confidence            8888765553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.95  E-value=1.9e-07  Score=101.70  Aligned_cols=196  Identities=15%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             CEEE-EEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743            7 EHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (633)
Q Consensus         7 ~~La-Sgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt   85 (633)
                      ++++ +-..+|.|.|.|..+.+.+..+.... ..-..++|++|++ ++++++.||.|.++|+.+.+. +..+... ....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~-v~~i~~G-~~~~   81 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKV-VATIKVG-GNPR   81 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSE-EEEEE-S-SEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCC-EEEEEcCCCeEEEEECCcccE-EEEEecC-CCcc
Confidence            4454 45568999999999999999998533 3333478999998 677778999999999999884 5555544 4578


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEeeC--------CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCC
Q 006743           86 GISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCITY--------EAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKP  155 (633)
Q Consensus        86 sLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v~~i~h--------~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~  155 (633)
                      ++++++||+++++++ .++.+.++|.++.+++..+..        +..+..+..+|....++..-. .+.|.+.|.....
T Consensus        82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~  161 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK  161 (369)
T ss_dssp             EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred             eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence            899999999988776 688999999999998887742        346778888888885555555 5889999987763


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ....  .............|+|+++|++.+....+...++.......+.+.|.
T Consensus       162 ~~~~--~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~  212 (369)
T PF02239_consen  162 NLKV--TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT  212 (369)
T ss_dssp             CEEE--EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred             ccce--eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence            3221  22234566788999999988766544444333333333334444444

...

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=4.4e-09  Score=115.29  Aligned_cols=119  Identities=19%  Similarity=0.317  Sum_probs=99.6

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 006743           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT  107 (633)
Q Consensus        35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~-------~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI  107 (633)
                      .|.+.|+++.|.+... .|++++.||+|++|.+...       ...+..+++|.++|.|+++.+++.++++|+-||+|+.
T Consensus       292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~  370 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC  370 (577)
T ss_pred             cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence            3667788899998887 7999999999999999321       1236789999999999999999999999999999999


Q ss_pred             EeCC------CCc---ee--eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743          108 YDPG------SRR---PS--SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       108 WDlr------tgk---~v--~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      |++-      +.-   .+  ...+|.+.++.++++.....|++++.||+|++|+....
T Consensus       371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence            9553      111   11  23379999999999999999999999999999998765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.92  E-value=8e-09  Score=119.73  Aligned_cols=148  Identities=20%  Similarity=0.221  Sum_probs=120.7

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~   82 (633)
                      +++.-++++|+.-+.|.+|+......-..+.+ |.+.+..+.|+-+|+ ++++.++|.++++|++++.+.......+|..
T Consensus       142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             cCcEEEEEeccccccEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccc
Confidence            44455788899999999999873222223555 666777799999998 8999999999999999988865556789999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      .|..++|.|+  ++++++.|.++++|+....+......| ...|..++..++..++++++.|+.+++||+.+.
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9999999987  999999999999997664444322234 567999999999999999999999999998764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.91  E-value=5.7e-10  Score=126.22  Aligned_cols=116  Identities=14%  Similarity=0.198  Sum_probs=105.1

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      +.+.+|...|+|+.|...|.+|++|++|..|+||.+.++.+.... +|.+.|+.++.+.++.++++++.|..|++|.+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            346789999999999999999999999999999999999888777 7999999999999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      + .++.++.  +|.+.|++|+|+|-                .+.+.||++++||.|
T Consensus       264 ~-~pvsvLr--ghtgavtaiafsP~----------------~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  264 G-APVSVLR--GHTGAVTAIAFSPR----------------ASSSDDGTCRIWDAR  300 (1113)
T ss_pred             C-chHHHHh--ccccceeeeccCcc----------------ccCCCCCceEecccc
Confidence            7 5677777  89999999999993                255679999999988

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=3.5e-07  Score=100.74  Aligned_cols=161  Identities=11%  Similarity=0.100  Sum_probs=107.7

Q ss_pred             cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 006743           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~   94 (633)
                      .|.++|...+. ...+.. +...+....|+|+|+.++++...+  ..|++||+.++..  ..+....+.+...+|+|||+
T Consensus       180 ~l~~~d~~g~~-~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCC-ceEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence            47788875443 344443 345667789999998544444333  3699999987763  33444445566799999999


Q ss_pred             EEEE-EeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006743           95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE  168 (633)
Q Consensus        95 ~LaS-gS~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H~~  168 (633)
                      .|+. ...++  .|++||+.+++......+........|+|||+.|+..+. +|  .|++||+.+++ . ..+..  ...
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~-~~lt~--~~~  331 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-A-ERVTF--VGN  331 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEeec--CCC
Confidence            8874 44444  689999998876655455556677899999998876654 33  58888887663 2 22221  122


Q ss_pred             CeeEEEEccCCCeEEEe
Q 006743          169 AVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~  185 (633)
                      ......|+|+|++|+..
T Consensus       332 ~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        332 YNARPRLSADGKTLVMV  348 (430)
T ss_pred             CccceEECCCCCEEEEE
Confidence            34467899998887765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=3.4e-08  Score=108.56  Aligned_cols=166  Identities=17%  Similarity=0.302  Sum_probs=125.8

Q ss_pred             EEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-----EEeccCCC-
Q 006743            9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-----SWLKQHSA-   82 (633)
Q Consensus         9 LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v-----~~l~~H~~-   82 (633)
                      |+.++....|+-+|++.|+-+..+.. ....+++|..++... +|++|+.+|.|..||.+.....-     ..+..|.+ 
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~  225 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG  225 (703)
T ss_pred             EEEeecCcceEEEEcccccccccccc-ccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence            44555667899999999998888774 456788899999877 89999999999999997665321     11223333 


Q ss_pred             ----CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC--CCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 006743           83 ----PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        83 ----~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h--~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~  154 (633)
                          .|+++.|+.+|-.+++|..+|.|.|||+|+.+++..-.|  .-+|..+.|.+.  ...|++ .....++|||-.++
T Consensus       226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTG  304 (703)
T ss_pred             cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccC
Confidence                499999998899999999999999999999998877654  567899999875  344444 44577999999988


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCe
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPV  181 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~  181 (633)
                      + +...+.   ....+..+|+-|++-.
T Consensus       305 k-~~asiE---pt~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  305 K-PMASIE---PTSDLNDFCFVPGSGM  327 (703)
T ss_pred             C-ceeecc---ccCCcCceeeecCCce
Confidence            3 333333   4556888998885433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=2.5e-07  Score=103.07  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=106.0

Q ss_pred             cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 006743           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~   94 (633)
                      .|.++|..... .+.+.. ....+....|+|+|+.++++...++  .|++||+.+++.  ..+..........+|+||++
T Consensus       199 ~l~i~d~dG~~-~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCC-ceEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence            57777864433 333433 3456677899999985555544444  588899987763  23333334455789999999


Q ss_pred             EEEE-EeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006743           95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE  168 (633)
Q Consensus        95 ~LaS-gS~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H~~  168 (633)
                      .|+. .+.++  .|++||+.+++......+.......+|+|||++|+..+. ++  .|+++|+.+++  ...+..  ...
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~--~g~  350 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTF--EGE  350 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEec--CCC
Confidence            8875 45556  488889988876655555556778899999998876654 33  47777887653  222321  222


Q ss_pred             CeeEEEEccCCCeEEEe
Q 006743          169 AVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~  185 (633)
                      .....+|+|+|++|+..
T Consensus       351 ~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        351 QNLGGSITPDGRSMIMV  367 (448)
T ss_pred             CCcCeeECCCCCEEEEE
Confidence            34557899998887665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.88  E-value=2.3e-08  Score=102.73  Aligned_cols=182  Identities=17%  Similarity=0.135  Sum_probs=126.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEec
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLK   78 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~l~   78 (633)
                      |++.+..+++...+|.+.+-+......  ++..+. |.-.+...+|+....+++++|++|+.+..||++..+ ..-+..+
T Consensus       129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k  207 (339)
T KOG0280|consen  129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK  207 (339)
T ss_pred             eeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence            566778888888899988665444332  235555 444455578988877899999999999999998333 3334466


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CceeeEeeCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 006743           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt-gk~v~~i~h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~  154 (633)
                      .|...|.+|.-+| .+.+|++|+.|..|++||.|+ ++++..-...+.|..++++|.  +..|+++-.+| .+|-++...
T Consensus       208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~  286 (339)
T KOG0280|consen  208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK  286 (339)
T ss_pred             eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence            7899999999988 889999999999999999994 778777777899999999994  33444444444 666666554


Q ss_pred             CCceE-EE-eecCCCCCeeEEEEccCCCeEEEe
Q 006743          155 PQPLT-VL-RACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       155 ~k~v~-~l-~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ...+. .+ ....|.+-++.-.|.....++++|
T Consensus       287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC  319 (339)
T KOG0280|consen  287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC  319 (339)
T ss_pred             ccchheeeeccccccceeeccccccccceeeee
Confidence            22211 11 112566666666664433444444

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.88  E-value=5.3e-09  Score=125.90  Aligned_cols=185  Identities=14%  Similarity=0.218  Sum_probs=145.6

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~   82 (633)
                      +|...+.++|+.||.|++|....++.+..+.......|+.+.|+.+|. .+..+..||.+.+|.+...  .....+.|+.
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~pk--~~~s~qchnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASPK--PYTSWQCHNK 2293 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccCCc--ceeccccCCc
Confidence            455678899999999999999999888887754557788899999998 7889999999999999833  3667789999


Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCce--eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS---~DGtVrIWDlrtgk~--v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      ...+++|-.  ..+++++   .++.+.+||.--...  .....|.+.++++++.|.-..|++|+.+|.|++||++..+ .
T Consensus      2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq-l 2370 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-L 2370 (2439)
T ss_pred             cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH-H
Confidence            999999984  6677765   567899999754322  2224799999999999999999999999999999999762 2


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      .+.+.       .    ++             ...++++++..|.++||++..+.-..+.
T Consensus      2371 ~h~~~-------~----~~-------------~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2371 RHTFQ-------A----LD-------------TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             HHHhh-------h----hh-------------hhheeeccCcccceEEEEccccchhhcC
Confidence            22222       1    11             4567888889999999999766444443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=9.1e-08  Score=109.53  Aligned_cols=150  Identities=16%  Similarity=0.211  Sum_probs=118.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCcee---EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC---CCceeE
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG---RSPKVS   75 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v---~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t---~~~~v~   75 (633)
                      +++.|++.+.. .+..+.+|+...+...   .....+|...++|++++|+++ ++++|..||.|.+|.--+   .....+
T Consensus       168 ~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t  245 (792)
T KOG1963|consen  168 DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCT  245 (792)
T ss_pred             EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccce
Confidence            34455544433 4556888888765421   122234666689999999998 899999999999997533   222356


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      .+.=|...|++++|+++|.+|++|+..|.+.+|.+.+++....-...++|..+.++||+.+.++...|..|++....+
T Consensus       246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             EEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            677799999999999999999999999999999999998554446889999999999999999999999999987754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.86  E-value=3e-08  Score=116.45  Aligned_cols=182  Identities=18%  Similarity=0.149  Sum_probs=124.3

Q ss_pred             EECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------eEEeccCCCCeEEEEEcCCCC
Q 006743           21 HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------VSWLKQHSAPTAGISFSSDDK   94 (633)
Q Consensus        21 WDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------v~~l~~H~~~VtsLafSPdg~   94 (633)
                      |++ .|..+..+..|... +..++.++....+|++|+.||+|++||++.-...      ..++......+.++...+.+.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~-v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSA-VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCc-cceEeehhhhcccc-ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            554 56677777654444 4467777666449999999999999998543211      122333567899999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCc--e-----eeEee--CCCCeEE-EEEec-CCC-EEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743           95 IIASVGLDKKLYTYDPGSRR--P-----SSCIT--YEAPFSS-LAFID-DDW-ILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (633)
Q Consensus        95 ~LaSgS~DGtVrIWDlrtgk--~-----v~~i~--h~~~Its-LafSP-dG~-~LatGs~DGsV~IWDlrs~~k~v~~l~  162 (633)
                      .+|+++.||.|++.++....  .     .+...  ..+.+.+ -++.. .+. .|+.+...+.|..||+++.... ..++
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-w~lk 1190 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-WRLK 1190 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-Hhhh
Confidence            99999999999999987521  1     11111  2233333 33333 233 7888999999999999986432 3333


Q ss_pred             ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       163 ~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      .....|.|++++.+|.+.            .++.|...|.+.+||+|-..+..+-
T Consensus      1191 ~~~~hG~vTSi~idp~~~------------WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCN------------WLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred             cCccccceeEEEecCCce------------EEEEecCCceEEEEEeecCceeecc
Confidence            334568899999999544            4555577889999999977665443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.79  E-value=4.8e-06  Score=89.54  Aligned_cols=198  Identities=13%  Similarity=0.168  Sum_probs=126.6

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCC-CceeEE---Ee---------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006743            1 MYNCKDEHLASISL-SGDLILHNLAS-GAKAAE---LK---------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG~I~IWDl~t-gk~v~~---~~---------~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWD   66 (633)
                      ++++++++|+++.. +|.|.++++.. +.....   +.         ........++.|+|+++.++++.-....|++|+
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence            36789999999874 89999999986 433222   21         012345678999999996665555567899999


Q ss_pred             CCCCCcee---EE-eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC--CCcee--eEee-------CCCCeEEEEE
Q 006743           67 TTGRSPKV---SW-LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPG--SRRPS--SCIT-------YEAPFSSLAF  130 (633)
Q Consensus        67 l~t~~~~v---~~-l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlr--tgk~v--~~i~-------h~~~ItsLaf  130 (633)
                      +......+   .. -......-+.++|+|+++++++.. .++.|.+|++.  ++...  ..+.       .......+++
T Consensus       173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i  252 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI  252 (345)
T ss_dssp             E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred             EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence            97655211   11 123445678999999999886665 56789999887  44322  2221       1225889999


Q ss_pred             ecCCCEEEEEEc-CCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          131 IDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       131 SPdG~~LatGs~-DGsV~IWDlrs~~k~v~~l~~~-~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +|||++|+++.. ++.|.+|++......+..+... ........++++|+|++|+.+           +..++.|.+|++
T Consensus       253 spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-----------~~~s~~v~vf~~  321 (345)
T PF10282_consen  253 SPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-----------NQDSNTVSVFDI  321 (345)
T ss_dssp             -TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-----------ETTTTEEEEEEE
T ss_pred             ecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-----------ecCCCeEEEEEE
Confidence            999999988764 6789999995432223333322 224458899999987776554           334556666655


Q ss_pred             C
Q 006743          209 L  209 (633)
Q Consensus       209 r  209 (633)
                      .
T Consensus       322 d  322 (345)
T PF10282_consen  322 D  322 (345)
T ss_dssp             E
T ss_pred             e
Confidence            3

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.78  E-value=1.4e-07  Score=97.06  Aligned_cols=167  Identities=16%  Similarity=0.108  Sum_probs=122.3

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCC---C--cEEEEEEccCCCeEEEEEeCCCeEEEEE-CCCCCceeEEeccCC
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNE---Q--VLRVLDYSRNSRHLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHS   81 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~---~--~VssLafSpdg~~lLaSGs~DGtI~IWD-l~t~~~~v~~l~~H~   81 (633)
                      .++-+..+|.|.+|..........+.+-..   .  ..-++.|++.+. -++++..+|.+.+-+ .+..-..++.++.|.
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He  165 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHE  165 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccc
Confidence            455566678888887644333333332111   1  123478888887 588888889988443 333333456889999


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeE--eeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCC
Q 006743           82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSC--ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        82 ~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~--i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      -+++-..|+. +.+++++|++|+.+..||+|..+ .+..  ..|...|.++.-+| .+.+|++|+.|-.|++||.|+..+
T Consensus       166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence            9999999988 77899999999999999999433 2222  24788899998887 688999999999999999998777


Q ss_pred             ceEEEeecCCCCCeeEEEEccC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPd  178 (633)
                      |+..-.   -.+.|+.+.++|.
T Consensus       246 Pl~~~~---v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  246 PLFKAK---VGGGVWRIKHHPE  264 (339)
T ss_pred             ccccCc---cccceEEEEecch
Confidence            765443   4588999999995

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.77  E-value=1.3e-06  Score=95.18  Aligned_cols=209  Identities=13%  Similarity=0.111  Sum_probs=129.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~-   79 (633)
                      +|++||+++++++.||.|.++|+.+++.+.+++.  +.....++++++|+.+++++..++.+.|+|.++.+. ++.+.. 
T Consensus        43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~  119 (369)
T PF02239_consen   43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTG  119 (369)
T ss_dssp             E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--
T ss_pred             EecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccc
Confidence            3789999999999999999999999999999984  345677999999996666667899999999998874 343332 


Q ss_pred             ------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcee--eEeeCCCCeEEEEEecCCCEEEEE-EcCCeEEEE
Q 006743           80 ------HSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPS--SCITYEAPFSSLAFIDDDWILTAG-TSNGRVVFY  149 (633)
Q Consensus        80 ------H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v--~~i~h~~~ItsLafSPdG~~LatG-s~DGsV~IW  149 (633)
                            ....+..+..+|....++..- +.+.|.+.|....+..  ..+..........|+|++++++++ ..+..|-++
T Consensus       120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi  199 (369)
T PF02239_consen  120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI  199 (369)
T ss_dssp             EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred             cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence                  234678888888777555554 4588999998776543  344566778899999999987765 557789999


Q ss_pred             ECCCCCCceEEEee--cCCCCCeeEEEEccC-CCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          150 DIRGKPQPLTVLRA--CSSSEAVSSLCWQRA-KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       150 Dlrs~~k~v~~l~~--~~H~~~VtsLafsPd-g~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      |.++.+ .+..+..  ..|..++..+- +|. |.+.....   .+...++.-..+.+.+||..........
T Consensus       200 D~~~~k-~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~---~~~~~~~~ig~~~v~v~d~~~wkvv~~I  265 (369)
T PF02239_consen  200 DTKTGK-LVALIDTGKKPHPGPGANFP-HPGFGPVWATSG---LGYFAIPLIGTDPVSVHDDYAWKVVKTI  265 (369)
T ss_dssp             ETTTTE-EEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEB---SSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred             eeccce-EEEEeecccccccccccccc-CCCcceEEeecc---ccceecccccCCccccchhhcCeEEEEE
Confidence            998863 2333321  13455555543 443 22222221   1122222222345566777665554443

...

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=3e-07  Score=101.22  Aligned_cols=179  Identities=16%  Similarity=0.220  Sum_probs=121.6

Q ss_pred             ECCCcEEEEECCCCce-----eEEEeCCCCCcEEEEEEccCCCeEEEEEeC--CC---------eEEEEECCCCCceeEE
Q 006743           13 SLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DG---------TLHLWDTTGRSPKVSW   76 (633)
Q Consensus        13 s~DG~I~IWDl~tgk~-----v~~~~~~~~~~VssLafSpdg~~lLaSGs~--DG---------tI~IWDl~t~~~~v~~   76 (633)
                      |.-+.|+||.......     .+.|-  ..+.|. +.|++.|.-+|+.++.  |+         +++++++.+..+  ..
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFF--kadkvq-m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--~V  265 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFF--KADKVQ-MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--SV  265 (566)
T ss_pred             CCCcEEEEeccccccccchhhhcccc--ccceeE-EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE--EE
Confidence            3445688887642211     11221  234555 7899988766665543  33         688888885553  22


Q ss_pred             eccCCCCeEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEEEC
Q 006743           77 LKQHSAPTAGISFSSDDKIIAS--VGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFYDI  151 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaS--gS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IWDl  151 (633)
                      -....++|+++.|+++++.|++  |-+-.++.|||++ +.++..+ .+++=+++-|+|.|++|+.++.+   |.|-|||+
T Consensus       266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            3345789999999999976655  4566789999987 4555444 46778889999999999988764   78999999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .+.+ .+..+.    ...-+-+.|+|||++++++.....-.      .|+.++||+..
T Consensus       344 ~n~K-~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlr------vdNg~Kiwhyt  390 (566)
T KOG2315|consen  344 PNRK-LIAKFK----AANTTVFEWSPDGEYFLTATTAPRLR------VDNGIKIWHYT  390 (566)
T ss_pred             cchh-hccccc----cCCceEEEEcCCCcEEEEEeccccEE------ecCCeEEEEec
Confidence            9863 333333    23456789999999988873322222      28999999873

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.75  E-value=1.9e-07  Score=97.67  Aligned_cols=197  Identities=14%  Similarity=0.200  Sum_probs=132.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEEeCCC-----------CCcEEEEEEccCCC-eEEEEEeCCCeEEE
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRNSR-HLLVTAGDDGTLHL   64 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk-----~v~~~~~~~-----------~~~VssLafSpdg~-~lLaSGs~DGtI~I   64 (633)
                      |+..|++||+|+.+|.|.+|.-....     ....++.|.           .+.|..+.|.+++. ..++....|++|++
T Consensus        33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl  112 (433)
T KOG1354|consen   33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL  112 (433)
T ss_pred             eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence            67889999999999999999754322     122232221           23577789987653 35667788999999


Q ss_pred             EECCCCCce-----------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743           65 WDTTGRSPK-----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (633)
Q Consensus        65 WDl~t~~~~-----------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD  109 (633)
                      |.+......                                   ...-..|...|+++.++.|+..++++. |=.|.+|+
T Consensus       113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWn  191 (433)
T KOG1354|consen  113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWN  191 (433)
T ss_pred             eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeecc
Confidence            988432211                                   011246788899999999988888766 66799999


Q ss_pred             CCC-CceeeEee--------CCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCce---EEEeec----------CC
Q 006743          110 PGS-RRPSSCIT--------YEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPL---TVLRAC----------SS  166 (633)
Q Consensus       110 lrt-gk~v~~i~--------h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v---~~l~~~----------~H  166 (633)
                      +.- .+...+..        ....|++..|+|. .++++-.+..|.|++.|+|...-+-   +.+..+          +-
T Consensus       192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei  271 (433)
T KOG1354|consen  192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI  271 (433)
T ss_pred             ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence            873 33333332        2345889999995 5677888889999999999532111   111111          11


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       167 ~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      -..|..+.|+++|+|+++-             .=-+|++||+.+..
T Consensus       272 IsSISDvKFs~sGryilsR-------------Dyltvk~wD~nme~  304 (433)
T KOG1354|consen  272 ISSISDVKFSHSGRYILSR-------------DYLTVKLWDLNMEA  304 (433)
T ss_pred             hhhhhceEEccCCcEEEEe-------------ccceeEEEeccccC
Confidence            2457889999988888764             12689999995433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.73  E-value=7e-06  Score=88.29  Aligned_cols=197  Identities=14%  Similarity=0.131  Sum_probs=126.0

Q ss_pred             CccCCCCEEEEEEC----CCcEEEEECCCC--c--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            1 MYNCKDEHLASISL----SGDLILHNLASG--A--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         1 AFSpdG~~LaSgs~----DG~I~IWDl~tg--k--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      ++++++++|++...    +|.|..|++...  +  .+..... .......++++|+++.++++--.+|.|.+|++.....
T Consensus        43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~  121 (345)
T PF10282_consen   43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS  121 (345)
T ss_dssp             EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred             EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence            46889999998876    578999988654  3  2333331 2333445899999995555555699999999976432


Q ss_pred             eeEE--ec-----------cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc--eee----EeeCCCCeEEEEEec
Q 006743           73 KVSW--LK-----------QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRR--PSS----CITYEAPFSSLAFID  132 (633)
Q Consensus        73 ~v~~--l~-----------~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk--~v~----~i~h~~~ItsLafSP  132 (633)
                      ....  ..           .......++.|+|+++++++... ...|++|++....  ...    .+........++|+|
T Consensus       122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p  201 (345)
T PF10282_consen  122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP  201 (345)
T ss_dssp             EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred             cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence            2111  11           22356789999999998888753 3479999987654  322    224667799999999


Q ss_pred             CCCEEEEEEc-CCeEEEEECCCCCCceEEEe---ec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743          133 DDWILTAGTS-NGRVVFYDIRGKPQPLTVLR---AC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (633)
Q Consensus       133 dG~~LatGs~-DGsV~IWDlrs~~k~v~~l~---~~----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik  204 (633)
                      +++++.+.++ ++.|.+|++......+..+.   ..    ........|+++|+|++|...           ...++.|.
T Consensus       202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-----------nr~~~sI~  270 (345)
T PF10282_consen  202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-----------NRGSNSIS  270 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-----------ECTTTEEE
T ss_pred             CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-----------eccCCEEE
Confidence            9998876654 78899999883222222222   11    112257889999988776554           33366666


Q ss_pred             ccCCC
Q 006743          205 MPDPL  209 (633)
Q Consensus       205 IWDlr  209 (633)
                      +|++.
T Consensus       271 vf~~d  275 (345)
T PF10282_consen  271 VFDLD  275 (345)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77663

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.72  E-value=8e-07  Score=90.62  Aligned_cols=198  Identities=16%  Similarity=0.137  Sum_probs=131.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      +..+||.|+..|...+|.+.+.+....+...+...|..+.=.-+...-+..++.|.++++.+++............ -.+
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~  161 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQ  161 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cce
Confidence            3458899999999999999876644333322322222221111222247788999999999987665322221111 238


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eee--EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk--~v~--~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..+++++|+++++++++...|-.|.+....  .+.  .....+.-.+..|+.....+|++..||++.|||+|....+...
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            899999999999999999999999887532  222  1134566678889999999999999999999999986544433


Q ss_pred             E--eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          161 L--RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       161 l--~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .  ....|.+.+..+.|++.|..         ..++++ ..-+.+.+-|+|.+..
T Consensus       242 ~sstrp~hnGa~R~c~Fsl~g~l---------DLLf~s-Ehfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  242 ISSTRPHHNGAFRVCRFSLYGLL---------DLLFIS-EHFSRVHVVDTRNYVN  286 (344)
T ss_pred             hcccCCCCCCceEEEEecCCCcc---------eEEEEe-cCcceEEEEEcccCce
Confidence            2  23468999999999984422         222222 2245566666665543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.67  E-value=2.8e-06  Score=92.09  Aligned_cols=170  Identities=13%  Similarity=0.153  Sum_probs=132.4

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEeccCCCC
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQHSAP   83 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG-tI~IWDl~t~~~~v~~l~~H~~~   83 (633)
                      +|++++..+ .|...|.+...+-.++   ..+...|+=..+.-+++ -++.|..|| .+-|||..+++  +..+...-+.
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~  403 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGN  403 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEE---cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce--EEEeeCCccc
Confidence            578888776 5677888766554433   23555577677777776 688999999 89999999988  5666777789


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCCCCce
Q 006743           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNG----RVVFYDIRGKPQPL  158 (633)
Q Consensus        84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DG----sV~IWDlrs~~k~v  158 (633)
                      |.++..+++|++++.+.....|.++|+.+++....- ...+-|+..+|+|++++||-+--+|    .|++||+.+.    
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~----  479 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG----  479 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC----
Confidence            999999999999999999999999999999875444 4677899999999999999887666    4899999987    


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +++........=.+-+|+|++++|..-
T Consensus       480 Kiy~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         480 KIYDVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             eEEEecCCcccccCcccCCCCcEEEEE
Confidence            233322344455678899999888643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.65  E-value=4.7e-06  Score=101.83  Aligned_cols=194  Identities=13%  Similarity=0.066  Sum_probs=124.2

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCC----------------CCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743            1 MYNCKDEHLASISL-SGDLILHNLASGAKAAELKDPN----------------EQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~----------------~~~VssLafSpdg~~lLaSGs~DGtI~   63 (633)
                      +|+++++.|+++.. ++.|+++|+.++. +..+.+..                ...-..|+|+|++..++++...++.|+
T Consensus       630 avd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~  708 (1057)
T PLN02919        630 AYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIW  708 (1057)
T ss_pred             EEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEE
Confidence            35667777666654 4678889986654 33332100                012246899996555788888899999


Q ss_pred             EEECCCCCceeEEecc---------------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeEee-------
Q 006743           64 LWDTTGRSPKVSWLKQ---------------HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT-------  120 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~---------------H~~~VtsLafSPdg~~L-aSgS~DGtVrIWDlrtgk~v~~i~-------  120 (633)
                      +||..++..  ..+.+               .-.....|+|+|+++.| ++-..++.|++||+.++.......       
T Consensus       709 v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~  786 (1057)
T PLN02919        709 EYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD  786 (1057)
T ss_pred             EEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence            999976642  22211               11235679999998854 555667899999998765322110       


Q ss_pred             -------C--------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC------------CCCCeeEE
Q 006743          121 -------Y--------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS------------SSEAVSSL  173 (633)
Q Consensus       121 -------h--------~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~------------H~~~VtsL  173 (633)
                             .        -.....++++++|+++++-..++.|++||..++. . ..+...+            .-.....|
T Consensus       787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~-v-~tiaG~G~~G~~dG~~~~a~l~~P~GI  864 (1057)
T PLN02919        787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR-V-TTLAGTGKAGFKDGKALKAQLSEPAGL  864 (1057)
T ss_pred             ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe-E-EEEeccCCcCCCCCcccccccCCceEE
Confidence                   0        1124689999999988888899999999998752 1 2221111            11235566


Q ss_pred             EEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       174 afsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +++++            +.++++...++.|++||+...
T Consensus       865 avd~d------------G~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        865 ALGEN------------GRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EEeCC------------CCEEEEECCCCEEEEEECCCC
Confidence            76664            345566677889999998653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.64  E-value=6.3e-08  Score=116.97  Aligned_cols=176  Identities=15%  Similarity=0.239  Sum_probs=126.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---CCCeEEEEECCC--CCceeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---DDGTLHLWDTTG--RSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs---~DGtI~IWDl~t--~~~~v~   75 (633)
                      .|+.+|+.+..+..||.+.+|... .+.....++ |.....++.|-.  . .+++++   +++.+.+||..-  ....++
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceee
Confidence            488999999999999999999975 566666665 445566677765  2 566654   578999999743  333344


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                        ..|.+.++++++.|....|++|+.+|.|++||++..+..+.+..        ++ ...++++|+..|.|+||++... 
T Consensus      2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~- 2400 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEF- 2400 (2439)
T ss_pred             --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEcccc-
Confidence              78999999999999999999999999999999998887766543        44 5679999999999999999876 


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg  201 (633)
                      ..+..+.. .|  .-.++ |-..|..+-.+    ....+++|+.|+
T Consensus      2401 ~ll~~~p~-e~--ak~gf-Fr~~g~Q~~v~----~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2401 GLLHTFPS-EH--AKQGF-FRNIGMQINVG----QCNRIFSCGADG 2438 (2439)
T ss_pred             chhhcCch-hh--cccch-hhhcCceeeec----cCceEEEecCCC
Confidence            22222221 12  22233 44444444333    445566666665

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.64  E-value=6.8e-07  Score=93.19  Aligned_cols=148  Identities=13%  Similarity=0.174  Sum_probs=106.3

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |..|..++ .....|+.|.+|++...+--+++... ...+..++|+|+|+++|.+..-|-.|.||.+.+.+..  .+.--
T Consensus        56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~p  132 (447)
T KOG4497|consen   56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHP  132 (447)
T ss_pred             eeccceeeeeeeeccceEEEEEeecceeEEEeccC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--Eeccc
Confidence            44555544 45678899999999988888888763 4556678999999999999999999999999887742  33333


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEeCCCCceeeEeeCCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDK------------------------------------KLYTYDPGSRRPSSCITYEAP  124 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DG------------------------------------tVrIWDlrtgk~v~~i~h~~~  124 (633)
                      ...+..++|+|||++.+.+++..                                    .+.+||---.-.+......-.
T Consensus       133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG  212 (447)
T KOG4497|consen  133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLG  212 (447)
T ss_pred             ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccc
Confidence            45578899999999988776432                                    233333211111112223456


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743          125 FSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus       125 ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      +..+.|+|.+++|++|+.|+.++|.+--
T Consensus       213 ~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  213 LKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             eeEEEeccccceEEeeccchhhhhhcee
Confidence            8889999999999999999998886543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.59  E-value=2.2e-05  Score=83.12  Aligned_cols=189  Identities=11%  Similarity=0.149  Sum_probs=129.3

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCC--CceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006743            1 MYNCKDEHLASISL---SGDLILHNLAS--GAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~---DG~I~IWDl~t--gk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~   73 (633)
                      +|++++++|.++..   +|.|..|.+..  |+...  .... .+..-+-|+++++++.++++--.-|.|.++-+.....+
T Consensus        46 ~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l  124 (346)
T COG2706          46 AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL  124 (346)
T ss_pred             EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence            57899999988755   47788877764  44322  1111 12232458999999954444456789999999653211


Q ss_pred             --eEEeccCCCC----------eEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeeE----eeCCCCeEEEEEecCCCE
Q 006743           74 --VSWLKQHSAP----------TAGISFSSDDKIIASVGLD-KKLYTYDPGSRRPSSC----ITYEAPFSSLAFIDDDWI  136 (633)
Q Consensus        74 --v~~l~~H~~~----------VtsLafSPdg~~LaSgS~D-GtVrIWDlrtgk~v~~----i~h~~~ItsLafSPdG~~  136 (633)
                        ......|.+.          +....+.|++++|++++.. -.|.+||+..++....    +......+.|.|+|++++
T Consensus       125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~  204 (346)
T COG2706         125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY  204 (346)
T ss_pred             ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE
Confidence              1123345555          8899999999999988632 2699999997765432    246778899999999999


Q ss_pred             EEEEEc-CCeEEEEECCCCCCceEEEee-------cCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          137 LTAGTS-NGRVVFYDIRGKPQPLTVLRA-------CSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       137 LatGs~-DGsV~IWDlrs~~k~v~~l~~-------~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                      ..+.++ +++|.+|........+..++.       +.-..+...|..+++|++|.++....+
T Consensus       205 aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d  266 (346)
T COG2706         205 AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD  266 (346)
T ss_pred             EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence            887665 899999999875333333332       233456778999999999988744333

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.57  E-value=4.8e-06  Score=92.38  Aligned_cols=143  Identities=13%  Similarity=0.183  Sum_probs=121.4

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEe-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~-~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt   85 (633)
                      ..++-|...|.|.+|++..++.-..+. +.|.+.|.++.|+.+-. +|.+++.|+.+..|+...... ...+.+....+.
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~~  148 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI-IRIWKEQKPLVS  148 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccccee-eeeeccCCCccc
Confidence            467788899999999999999888877 67888899998888776 899999999999999988773 566777888899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecC-----CCEEEEE-EcCCeEEEEECCC
Q 006743           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD-----DWILTAG-TSNGRVVFYDIRG  153 (633)
Q Consensus        86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPd-----G~~LatG-s~DGsV~IWDlrs  153 (633)
                      .++.+||+..+++++  +.|++||+++++.+..+ +|.++|.++.|--+     |.+++++ ..+..+.+|-++.
T Consensus       149 sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  149 SLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999999999988  57999999999999888 69999999999876     6777654 4455677887665

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.57  E-value=6.1e-07  Score=95.58  Aligned_cols=150  Identities=14%  Similarity=0.189  Sum_probs=105.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCce----eEEEeCCCCCcEEEEEEccCCCeEEEEE---eCCCeEEEEECCCCCcee
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAK----AAELKDPNEQVLRVLDYSRNSRHLLVTA---GDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~----v~~~~~~~~~~VssLafSpdg~~lLaSG---s~DGtI~IWDl~t~~~~v   74 (633)
                      +++.+++||++..+....+++......    +.....  ...-+.+.|..+.. ....+   ++...+.+|....+.  .
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~~~--~  144 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--PKRPTAISFIREDT-SVLVADKAGDVYSFDILSADSGR--C  144 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--ccCcceeeeeeccc-eEEEEeecCCceeeeeecccccC--c
Confidence            578899999998888877777754432    222221  12223344554444 23333   344455555555433  4


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~--~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ..+.+|-..+++++|+||+++|+++..|..|++-....-..+.  .++|..-|..++.-++ ..|++|+.|++|++||++
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecc
Confidence            5567999999999999999999999999999997776544443  3479999999998755 558999999999999999


Q ss_pred             CCCCc
Q 006743          153 GKPQP  157 (633)
Q Consensus       153 s~~k~  157 (633)
                      +++.+
T Consensus       224 sgk~L  228 (390)
T KOG3914|consen  224 SGKLL  228 (390)
T ss_pred             cCCcc
Confidence            98543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.53  E-value=2.7e-07  Score=103.85  Aligned_cols=202  Identities=13%  Similarity=0.162  Sum_probs=144.4

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCCcee-EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            2 YNCKD-EHLASISLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSpdG-~~LaSgs~DG~I~IWDl~tgk~v-~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      |+++. ..+++++.|-.|..||+.+.... ..+..-+.. -..|+|+-...+.+ +.+..+.|.+||++.+..+...+++
T Consensus       122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~-asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~  199 (1081)
T KOG0309|consen  122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA-ASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKG  199 (1081)
T ss_pred             cCCCCCcceeeccccccceeeeccCCCcceeeeeccccc-CceeeecccCcchh-hhccCCceEEEeccCCCcceEEecc
Confidence            44443 47899999999999999876533 333332333 34589998777544 5567788999999988888899999


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC--ceeeEeeCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECC--
Q 006743           80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR--RPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIR--  152 (633)
Q Consensus        80 H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg--k~v~~i~h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlr--  152 (633)
                      |...|+.++|+. -...+.+++.|++|+.||....  ...+.+....+|..-++-|-  |.++.---.+..|.+++.+  
T Consensus       200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~  279 (1081)
T KOG0309|consen  200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS  279 (1081)
T ss_pred             cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence            999999999987 5667899999999999998753  34455566777877777774  3444433333456555544  


Q ss_pred             -------CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          153 -------GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       153 -------s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                             +..+++..+.  +|...|....|...+....-  ....+..|++-+.|..+++|-+.
T Consensus       280 d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d--~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  280 DLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGD--YDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             hhhhccccCCcceeeec--CcchHHHHHhhhhcccccCC--CCccceeEEEeecCCceEeeecc
Confidence                   3445666665  89999998888764332211  13356689999999999999775

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.48  E-value=1.5e-06  Score=92.66  Aligned_cols=163  Identities=14%  Similarity=0.117  Sum_probs=113.5

Q ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--EeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcee
Q 006743           42 VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--WLKQHSAPTAGISFSSDDKIIASVGL---DKKLYTYDPGSRRPS  116 (633)
Q Consensus        42 sLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~--~l~~H~~~VtsLafSPdg~~LaSgS~---DGtVrIWDlrtgk~v  116 (633)
                      .+..++.++ +++.+..++...+++........+  ....-...-+++.|..+...+..+..   ...+.+|....+.+.
T Consensus        67 ~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~  145 (390)
T KOG3914|consen   67 LVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE  145 (390)
T ss_pred             ccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence            345566666 888888888877887755442111  11122233344555554444444444   445555655557888


Q ss_pred             eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743          117 SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG  196 (633)
Q Consensus       117 ~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlS  196 (633)
                      ..++|-.-++.++|+||+++|+++..|..|+|-..... ..+..+. .||..-|..++.-+             +..|++
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~Iesfc-lGH~eFVS~isl~~-------------~~~LlS  210 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESFC-LGHKEFVSTISLTD-------------NYLLLS  210 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhhc-cccHhheeeeeecc-------------Cceeee
Confidence            88899999999999999999999999999999776654 2223333 38999999999765             345888


Q ss_pred             eeCCCeEEccCCCCCCCCCccccc
Q 006743          197 GAVGDSILMPDPLPSVTTSSVSLS  220 (633)
Q Consensus       197 gs~Dg~IkIWDlr~~~~~ss~s~s  220 (633)
                      +++|+++++||++.......+..+
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             cCCCCcEEEEecccCCcccccchh
Confidence            899999999999988877665543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.47  E-value=4.1e-06  Score=96.61  Aligned_cols=187  Identities=17%  Similarity=0.184  Sum_probs=139.9

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      ++..++.|+-...+..+|+++.+..+...- ....|..++.+  ++ ++++|...|+|.+-|..+.+. ++.+..|.+.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEec--Cc-EEEeecccceEEeecCCcCce-eeeeeccccce
Confidence            556788888888999999988877766543 22235655543  44 899999999999999998884 78999999999


Q ss_pred             EEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 006743           85 AGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~---------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~  154 (633)
                      .++...  |+.|++|+.         |..|+|||+|..+.+.-+.......-+.|+|. ...+++++..|.+.+-|..+.
T Consensus       221 SDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  221 SDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccccc
Confidence            887775  999999985         55799999999887766655555577888885 467888889999999995443


Q ss_pred             CCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          155 PQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       155 ~k~-v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ..+ ..++........+..++++++++.++.+            ..+|.|.+|--++
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafg------------d~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFG------------DHEGHVNLWADRP  343 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEe------------cccCcEeeecCCC
Confidence            222 3333333445568899998876666554            5688899997544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.46  E-value=6.7e-07  Score=100.79  Aligned_cols=198  Identities=16%  Similarity=0.231  Sum_probs=139.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCC--CCceeEEe
Q 006743            2 YNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTG--RSPKVSWL   77 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t--~~~~v~~l   77 (633)
                      .+|.|+-+|.++.-| +.+.|+.. +.+..-+.......|-.+.|++... .+-+.......-.+|++..  .......+
T Consensus        32 i~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~l  110 (1081)
T KOG0309|consen   32 INPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVL  110 (1081)
T ss_pred             eccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEE
Confidence            356677777776665 55566654 3333333322234566688987632 1333444456667898843  33334567


Q ss_pred             ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           78 KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        78 ~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      .+|...|+++.|+| ....+++++-|-.|..||+++.. ++... .....-..|+|+...-.+.+.+..+.|++||.+.+
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g  190 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG  190 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCC
Confidence            79999999999999 67789999999999999999854 44443 34566778999985544555555677999999999


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ..++..++  +|...|..++|..-           ....+++++.|++|+.||......
T Consensus       191 s~pl~s~K--~~vs~vn~~~fnr~-----------~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  191 STPLCSLK--GHVSSVNSIDFNRF-----------KYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             CcceEEec--ccceeeehHHHhhh-----------hhhhhcccCCCCceeeeccccccc
Confidence            88888888  68888999998762           445678888999999999876554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.43  E-value=8.2e-06  Score=89.32  Aligned_cols=183  Identities=15%  Similarity=0.155  Sum_probs=125.8

Q ss_pred             EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC----------CCeEEEEECCCCCceeEEeccCC
Q 006743           12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD----------DGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus        12 gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~----------DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      .+..+.++||.+..+..+....-..-+.|. +.|++.|..+++-.-.          ...++|++++.....+  ...-.
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q-LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~  274 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQ-LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLK  274 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccE-EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--ecccc
Confidence            356678888888766655432211234444 8999999854443221          2468899998766433  33667


Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCCC
Q 006743           82 APTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFYDIRGKPQ  156 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IWDlrs~~k  156 (633)
                      ++|..++|.|.++.|++++  .+-.+.++|++..  +.....+..=..+.|+|.++++++++.|   |.|.+||..+...
T Consensus       275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             ccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence            8999999999777766554  7889999999976  4444455666778899999999988775   6799999988754


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ++..+.    .....-+.|+|+++++.....  ...    -..|..++|||+.
T Consensus       353 ~~~~~~----~~n~s~~~wspd~qF~~~~~t--s~k----~~~Dn~i~l~~v~  395 (561)
T COG5354         353 VAGAFN----GLNTSYCDWSPDGQFYDTDTT--SEK----LRVDNSIKLWDVY  395 (561)
T ss_pred             EEEEee----cCCceEeeccCCceEEEecCC--Ccc----cccCcceEEEEec
Confidence            443333    223455679999998876522  111    1348999999984

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=7.5e-07  Score=96.75  Aligned_cols=167  Identities=14%  Similarity=0.171  Sum_probs=130.4

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q 006743           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGS  112 (633)
Q Consensus        35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrt  112 (633)
                      .|.+.|..|.|+..|. .|++|++|..|.+||......+.....+|...|..-.|-|  +...|++++.||.|++=.+-.
T Consensus       140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            4677788899999998 8999999999999999888877777889999999999998  667899999999999877643


Q ss_pred             -Ccee---eEeeCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeEEE
Q 006743          113 -RRPS---SCITYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVFID  184 (633)
Q Consensus       113 -gk~v---~~i~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafsPdg~~Las  184 (633)
                       +.+.   ..-.|.++|..++.-|+. +.|.+++.|+.|.-+|++.........+...+..   ....++.+|.      
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~------  292 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR------  292 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC------
Confidence             3333   223699999999999965 6688999999999999997643333333333433   4667777774      


Q ss_pred             eccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          185 ETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       185 ~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                           .-..+..++.|..+++||.|....
T Consensus       293 -----nt~~faVgG~dqf~RvYD~R~~~~  316 (559)
T KOG1334|consen  293 -----NTNEFAVGGSDQFARVYDQRRIDK  316 (559)
T ss_pred             -----CccccccCChhhhhhhhcccchhh
Confidence                 333556667799999999987654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.41  E-value=1.8e-05  Score=96.88  Aligned_cols=154  Identities=12%  Similarity=0.200  Sum_probs=108.7

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCC--------------CCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDP--------------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLW   65 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~--------------~~~~VssLafSpdg~~lLaSGs~DGtI~IW   65 (633)
                      +|++ ++..+++...++.|++||..++... .+.+.              .......|+|+|++..++++-..++.|++|
T Consensus       689 a~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~  767 (1057)
T PLN02919        689 CFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL  767 (1057)
T ss_pred             EEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence            3566 4555566667889999998776542 22110              012234689999988677777788999999


Q ss_pred             ECCCCCceeEE------------ecc--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---
Q 006743           66 DTTGRSPKVSW------------LKQ--------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---  122 (633)
Q Consensus        66 Dl~t~~~~v~~------------l~~--------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---  122 (633)
                      |+.++......            +..        .-....+++++++|+++++-..++.|++||..++......+..   
T Consensus       768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G  847 (1057)
T PLN02919        768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG  847 (1057)
T ss_pred             ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence            99865421110            000        0112468899999999888899999999999887765444211   


Q ss_pred             -----------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743          123 -----------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus       123 -----------~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                                 .....|+++++|+++++-+.++.|++||+++..
T Consensus       848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence                       247789999999988888899999999998863

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.40  E-value=2.5e-06  Score=89.56  Aligned_cols=199  Identities=7%  Similarity=0.091  Sum_probs=130.4

Q ss_pred             CEEEEEECCCcEEEEECCCCc-----------------------------------eeEEEeCCCCCcEEEEEEccCCCe
Q 006743            7 EHLASISLSGDLILHNLASGA-----------------------------------KAAELKDPNEQVLRVLDYSRNSRH   51 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk-----------------------------------~v~~~~~~~~~~VssLafSpdg~~   51 (633)
                      ..++..+.|.+|++|.+....                                   +.+.+...|...|..|.++.|.. 
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-  177 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-  177 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence            366777899999999874321                                   11233345677788899998887 


Q ss_pred             EEEEEeCCCeEEEEECCCCC--ceeEEeccC-----CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee----eEe
Q 006743           52 LLVTAGDDGTLHLWDTTGRS--PKVSWLKQH-----SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPS----SCI  119 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~--~~v~~l~~H-----~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v----~~i  119 (633)
                      .++ .++|=.|.+|.++-..  ..+.-++.+     ..-|++..|+| ..++|+..+..|+|++.|+|.....    ..+
T Consensus       178 t~l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  178 TFL-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             eEe-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            344 4678899999985332  112223333     34688999999 7889999999999999999853221    111


Q ss_pred             e-------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe-EEEe
Q 006743          120 T-------------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV-FIDE  185 (633)
Q Consensus       120 ~-------------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~-Las~  185 (633)
                      .             .-..|..+.|++.|+|+++-.. -+|++||+....+|+..+..+.+...-.|-.+-.|.-+ -.-|
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence            1             1245889999999999987654 67999999887788888774322111111001111000 0112


Q ss_pred             ccCCCCeEEEEeeCCCeEEccCC
Q 006743          186 TTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       186 s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .+.+++.++++|+..+.++++++
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             EEcCCcceEecccccceEEEecC
Confidence            24557778888898999999985

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.39  E-value=0.00015  Score=78.49  Aligned_cols=196  Identities=9%  Similarity=0.074  Sum_probs=123.4

Q ss_pred             ccCCCCEEEEEEC----------CCcEEEEECCCCceeEEEeCCCC------CcEEEEEEccCCCeEEEEEeC-CCeEEE
Q 006743            2 YNCKDEHLASISL----------SGDLILHNLASGAKAAELKDPNE------QVLRVLDYSRNSRHLLVTAGD-DGTLHL   64 (633)
Q Consensus         2 FSpdG~~LaSgs~----------DG~I~IWDl~tgk~v~~~~~~~~------~~VssLafSpdg~~lLaSGs~-DGtI~I   64 (633)
                      ++|||+.|+++..          +..|.+||..+.+.+.++.....      .....++++|+|+.+++.--. +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            6899998887765          68899999999999988874222      112257899999844434324 789999


Q ss_pred             EECCCCCceeE--------------------Eecc---------------CCCCeEEE---------EEcC-CCCEEEEE
Q 006743           65 WDTTGRSPKVS--------------------WLKQ---------------HSAPTAGI---------SFSS-DDKIIASV   99 (633)
Q Consensus        65 WDl~t~~~~v~--------------------~l~~---------------H~~~VtsL---------afSP-dg~~LaSg   99 (633)
                      .|+..++....                    +..+               +...|...         .|.+ ++++++..
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            99976653210                    0000               00011000         2234 67776666


Q ss_pred             eCCCeEEEEeCCCC-----ceeeEee--------CCCCeEEEEEecCCCEEEEEE----------cCCeEEEEECCCCCC
Q 006743          100 GLDKKLYTYDPGSR-----RPSSCIT--------YEAPFSSLAFIDDDWILTAGT----------SNGRVVFYDIRGKPQ  156 (633)
Q Consensus       100 S~DGtVrIWDlrtg-----k~v~~i~--------h~~~ItsLafSPdG~~LatGs----------~DGsV~IWDlrs~~k  156 (633)
                      .. |+|.+.|+...     +....+.        ..+.+.-++++++++.+++..          ..+.|.++|..+.+ 
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-  290 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-  290 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-
Confidence            65 99999996443     3333221        233455599999999888743          12479999998873 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~-~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .+..+.   -...+..++++||++ .|+..           ...++.|.++|+.....
T Consensus       291 vi~~i~---vG~~~~~iavS~Dgkp~lyvt-----------n~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       291 RLRKIE---LGHEIDSINVSQDAKPLLYAL-----------STGDKTLYIFDAETGKE  334 (352)
T ss_pred             EEEEEe---CCCceeeEEECCCCCeEEEEe-----------CCCCCcEEEEECcCCeE
Confidence            333333   346899999999876 44332           23466677777755443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.38  E-value=4.1e-05  Score=83.31  Aligned_cols=190  Identities=11%  Similarity=0.046  Sum_probs=136.2

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCC------C--CCcEEEEE----Ecc-CCCeEEEEEeCCCeEEEEECCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDP------N--EQVLRVLD----YSR-NSRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~------~--~~~VssLa----fSp-dg~~lLaSGs~DGtI~IWDl~t   69 (633)
                      +.||+.++ -...|.|++||..+.+. .++...      .  ...+.-+.    |++ +|+ +++..+. |+..|.+...
T Consensus       275 nsDGkrIv-Fq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSR-GkaFi~~~~~  350 (668)
T COG4946         275 NSDGKRIV-FQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSR-GKAFIMRPWD  350 (668)
T ss_pred             CCCCcEEE-EecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEec-CcEEEECCCC
Confidence            56788776 45678999999866442 222211      0  01111111    333 344 7777776 7788877755


Q ss_pred             CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        70 ~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG-tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      +-  +. -.+|...|.-..+.-+++-++.|..|| .|-|||.++++..+....-+.|.++..+++|++++++.....|.+
T Consensus       351 ~~--~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         351 GY--SI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             Ce--eE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence            54  22 246777798888888888999999999 899999999998888888899999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +|+.++..  +.+. ....+-|+.++|+|++++++.+  ..++.+      -..|+++|...
T Consensus       428 ididngnv--~~id-kS~~~lItdf~~~~nsr~iAYa--fP~gy~------tq~Iklydm~~  478 (668)
T COG4946         428 IDIDNGNV--RLID-KSEYGLITDFDWHPNSRWIAYA--FPEGYY------TQSIKLYDMDG  478 (668)
T ss_pred             EEecCCCe--eEec-ccccceeEEEEEcCCceeEEEe--cCccee------eeeEEEEecCC
Confidence            99999842  3332 2456789999999999999987  222222      45677777643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.36  E-value=2.3e-06  Score=89.79  Aligned_cols=102  Identities=18%  Similarity=0.333  Sum_probs=81.6

Q ss_pred             EEEECCCcEEEEECC--CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006743           10 ASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI   87 (633)
Q Consensus        10 aSgs~DG~I~IWDl~--tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsL   87 (633)
                      ..|...|.|.+..+.  .-..+..+.+ |...+.+++|.+... +|++|..|..|.+||+-........+.+|...|..+
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            344455555554433  3345556665 667788899999877 899999999999999988777778889999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCC
Q 006743           88 SFSSDDKIIASVGLDKKLYTYDPGSR  113 (633)
Q Consensus        88 afSPdg~~LaSgS~DGtVrIWDlrtg  113 (633)
                      ...+.-+.+++++.||.|.+||++..
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEeccce
Confidence            98888899999999999999998643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=1.5e-05  Score=88.15  Aligned_cols=149  Identities=14%  Similarity=0.200  Sum_probs=106.7

Q ss_pred             cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEE-EEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCE
Q 006743           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLV-TAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKI   95 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLa-SGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~   95 (633)
                      ++++++++.......+  ...++|.+++|+++++.+.+ -|-.--.+.|||++..-  +..+  ..++=+++-|+|.|++
T Consensus       252 ~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~egpRN~~~fnp~g~i  325 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--PEGPRNTAFFNPHGNI  325 (566)
T ss_pred             eEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--CCCCccceEECCCCCE
Confidence            5778887633333333  35789999999999974433 34456789999998654  3332  4466788999999999


Q ss_pred             EEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCCCCceEEEeecCC
Q 006743           96 IASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS------NGRVVFYDIRGKPQPLTVLRACSS  166 (633)
Q Consensus        96 LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~------DGsV~IWDlrs~~k~v~~l~~~~H  166 (633)
                      |+.++.+   |.|-+||+.+.+++..+... ..+-+.|+|||.+|++++.      |+.++||+.....  +...   ..
T Consensus       326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~--l~~~---~f  399 (566)
T KOG2315|consen  326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL--LHEK---MF  399 (566)
T ss_pred             EEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce--eehh---hh
Confidence            9998875   58999999997777666433 3455789999999999876      6779999987652  1111   11


Q ss_pred             CCCeeEEEEcc
Q 006743          167 SEAVSSLCWQR  177 (633)
Q Consensus       167 ~~~VtsLafsP  177 (633)
                      ......++|.|
T Consensus       400 ~sEL~qv~W~P  410 (566)
T KOG2315|consen  400 KSELLQVEWRP  410 (566)
T ss_pred             hHhHhheeeee
Confidence            12577888887

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.35  E-value=1.5e-05  Score=88.27  Aligned_cols=197  Identities=15%  Similarity=0.168  Sum_probs=135.4

Q ss_pred             CccCCCCEEEEE---ECC-CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCcee
Q 006743            1 MYNCKDEHLASI---SLS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpdG~~LaSg---s~D-G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v   74 (633)
                      +|+++++.++..   ... ..|+++|+++++....+..  ...-..-+|+|||+.++++...||.  |+++|+.+..  .
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~  274 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--L  274 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--c
Confidence            478888876543   222 4699999998876555442  1222346899999988888888886  5556776665  2


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC-Ce--EEE
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-GR--VVF  148 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D-Gs--V~I  148 (633)
                      ..+....+.-..-.|+|||++|+-.+..+   .|.++|+..+...+.....+.-..-.|+|||++|+..+.. |.  |.+
T Consensus       275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~  354 (425)
T COG0823         275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDK  354 (425)
T ss_pred             eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEE
Confidence            33444434344668999999998877554   6888898877765554444444488899999999877643 44  777


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEc
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkI  205 (633)
                      +|+.+... +..+   .+........|.+++..+...+....+..+...+.++.+..
T Consensus       355 ~~~~~~~~-~~~l---t~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~  407 (425)
T COG0823         355 NDLASGGK-IRIL---TSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR  407 (425)
T ss_pred             eccCCCCc-EEEc---cccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence            77776643 3333   35566667889999999988767667777777777776654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=1.2e-06  Score=95.88  Aligned_cols=175  Identities=21%  Similarity=0.268  Sum_probs=116.9

Q ss_pred             eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 006743           29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSSDDKIIASVGLD  102 (633)
Q Consensus        29 v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~------~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D  102 (633)
                      ++.+.+ |...|+.++--.+. +-+++++.|++|++|.++...      ....++..|..+|+++.|..+-+++++  .|
T Consensus       728 L~nf~G-H~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD  803 (1034)
T KOG4190|consen  728 LCNFTG-HQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD  803 (1034)
T ss_pred             eecccC-cHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence            445555 55556655544444 369999999999999985321      113457789999999999988877765  47


Q ss_pred             CeEEEEeCCCCceeeEe---eCCCCeEEEEEec--CCCEEEEE-EcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEE
Q 006743          103 KKLYTYDPGSRRPSSCI---TYEAPFSSLAFID--DDWILTAG-TSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLC  174 (633)
Q Consensus       103 GtVrIWDlrtgk~v~~i---~h~~~ItsLafSP--dG~~LatG-s~DGsV~IWDlrs~~k--~v~~l~~~~H~~~VtsLa  174 (633)
                      +.|++||.--++++...   ...+.+..+..-+  +..++++| +...+|+++|.|...-  .+++-...+....+.+++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            88999999877766533   2333333333333  44555555 6788999999998642  223333345567799999


Q ss_pred             EccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       175 fsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ..+.|++++.+ -.++...++.......|.-|..
T Consensus       884 Va~~GN~lAa~-LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  884 VADKGNKLAAA-LSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             eccCcchhhHH-hcCCcEEEEecCCCceeccCCc
Confidence            99999999887 3344444555555556777754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.27  E-value=0.00028  Score=78.29  Aligned_cols=160  Identities=9%  Similarity=0.085  Sum_probs=103.7

Q ss_pred             CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEE-EEeC--CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 006743           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLV-TAGD--DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD   92 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLa-SGs~--DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPd   92 (633)
                      ..|.+-|. +|...+.+... . ......|+|+++.+++ +...  +..|+++|+.+++.  ..+....+.+....|+||
T Consensus       169 ~~l~~~d~-dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPD  243 (419)
T PRK04043        169 SNIVLADY-TLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKD  243 (419)
T ss_pred             ceEEEECC-CCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCC
Confidence            46777775 44444444432 3 5566899999985344 3333  35799999988773  344445566777899999


Q ss_pred             CCEEEEEe-C--CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCC
Q 006743           93 DKIIASVG-L--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSS  166 (633)
Q Consensus        93 g~~LaSgS-~--DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H  166 (633)
                      |+.++... .  +..|+++|+.+++......+........|+|||+.|+..+. .|  .|+++|+.++..  +.+...+.
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~  321 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGK  321 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCC
Confidence            98776543 2  34799999988876555444443456789999988876654 33  588888887632  12221111


Q ss_pred             CCCeeEEEEccCCCeEEEec
Q 006743          167 SEAVSSLCWQRAKPVFIDET  186 (633)
Q Consensus       167 ~~~VtsLafsPdg~~Las~s  186 (633)
                          ....|+|+|++|+...
T Consensus       322 ----~~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        322 ----NNSSVSTYKNYIVYSS  337 (419)
T ss_pred             ----cCceECCCCCEEEEEE
Confidence                1248999999887663

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.27  E-value=2e-06  Score=87.49  Aligned_cols=75  Identities=25%  Similarity=0.427  Sum_probs=69.3

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS  112 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt  112 (633)
                      ..|.+++-+|..++++++|++||.+-+||.+....++..++.|+.+|+.+-|+| ++..|+++++||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            448889999998899999999999999999988877888999999999999999 899999999999999999864

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.26  E-value=2.3e-06  Score=89.82  Aligned_cols=162  Identities=14%  Similarity=0.233  Sum_probs=111.2

Q ss_pred             EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCCCeE
Q 006743           10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSAPTA   85 (633)
Q Consensus        10 aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~----~~~v~~l~~H~~~Vt   85 (633)
                      ++.+.+-.|-+-|+++|.. ..|.  ...-|.++.|...+. +++.|+.+|.|.++|++..    ....+. .-|...|+
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~--sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvt  302 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ--SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVT  302 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc--cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchh
Confidence            4455677788888877633 2333  234456678887666 8999999999999999755    333333 45889999


Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee-eEeeCCCCeEEEE-----EecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           86 GISFSS-DDKIIASVGLDKKLYTYDPGSRRPS-SCITYEAPFSSLA-----FIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        86 sLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v-~~i~h~~~ItsLa-----fSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ++.... ++.+|++.+.+|+|++||+|.-++. .+..+++.|+..+     .++....|++++.|...+||.++.+ ..+
T Consensus       303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl  381 (425)
T KOG2695|consen  303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLL  381 (425)
T ss_pred             hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC-cee
Confidence            998887 8899999999999999999975552 1223344444433     3445678889999999999999977 333


Q ss_pred             EEEeec--CCCCCeeEEEEcc
Q 006743          159 TVLRAC--SSSEAVSSLCWQR  177 (633)
Q Consensus       159 ~~l~~~--~H~~~VtsLafsP  177 (633)
                      ..+...  .....+.+++|..
T Consensus       382 ~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  382 CTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eccCCCCccccccccceehhc
Confidence            333322  1222455666643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.23  E-value=0.00031  Score=71.47  Aligned_cols=177  Identities=14%  Similarity=0.145  Sum_probs=110.9

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCceeE-Ee
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WL   77 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafS-pdg~~lLaSGs~DGtI~IWDl~t~~~~v~-~l   77 (633)
                      +|.+ +|.++++--..+.|+.|+..+++... +..  .. ...+++. +++  .|+.+..++ +.++|..+++.... ..
T Consensus         6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS-EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             EEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC-CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            3676 55555665578899999987765443 332  12 4456777 554  355556544 55569887753211 11


Q ss_pred             c--c-CCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEE-EEEcCCe
Q 006743           78 K--Q-HSAPTAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT-AGTSNGR  145 (633)
Q Consensus        78 ~--~-H~~~VtsLafSPdg~~LaSgS~D--------GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~La-tGs~DGs  145 (633)
                      .  . .....+++++.++|++.++....        +.|..++.. ++.......-...+.++|+|+++.|+ +-+..+.
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence            1  1 34568899999999977776544        568888888 66555555567789999999999776 4556788


Q ss_pred             EEEEECCCCCCce---EEEeec-CCCCCeeEEEEccCCCeEEEe
Q 006743          146 VVFYDIRGKPQPL---TVLRAC-SSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       146 V~IWDlrs~~k~v---~~l~~~-~H~~~VtsLafsPdg~~Las~  185 (633)
                      |..|++......+   ..+... ...+..-.++++.+|++.++.
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~  201 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD  201 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence            9999997543311   222211 222347789998877665553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.22  E-value=1.1e-05  Score=83.77  Aligned_cols=198  Identities=14%  Similarity=0.212  Sum_probs=129.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEEeCCC-----------CCcEEEEEEccC-CCeEEEEEeCCCeEEE
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRN-SRHLLVTAGDDGTLHL   64 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk-----~v~~~~~~~-----------~~~VssLafSpd-g~~lLaSGs~DGtI~I   64 (633)
                      |...|.||++|...|.|.+|.-+...     -..+|+.|.           .+.|..+.|..+ ++.-++..+.|++|++
T Consensus        34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl  113 (460)
T COG5170          34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL  113 (460)
T ss_pred             eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence            55678999999999999999854432     122344332           234667888754 4556777789999999


Q ss_pred             EECCCCCce-----------------------------------------eE-EeccCCCCeEEEEEcCCCCEEEEEeCC
Q 006743           65 WDTTGRSPK-----------------------------------------VS-WLKQHSAPTAGISFSSDDKIIASVGLD  102 (633)
Q Consensus        65 WDl~t~~~~-----------------------------------------v~-~l~~H~~~VtsLafSPdg~~LaSgS~D  102 (633)
                      |.+.....+                                         .+ .-..|...|+++.|+.|...++++. |
T Consensus       114 WKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaD-d  192 (460)
T COG5170         114 WKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSAD-D  192 (460)
T ss_pred             eeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecc-c
Confidence            988543100                                         00 1145777789999998877777655 6


Q ss_pred             CeEEEEeCCCC-ceeeEe---eC-----CCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCce---EEEe----ec-
Q 006743          103 KKLYTYDPGSR-RPSSCI---TY-----EAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPL---TVLR----AC-  164 (633)
Q Consensus       103 GtVrIWDlrtg-k~v~~i---~h-----~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~v---~~l~----~~-  164 (633)
                      -.|.+|++.-. ....+.   +|     ...|++..|+|.. ..+.-.+..|.|++-|+|....+.   +.+.    .. 
T Consensus       193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~  272 (460)
T COG5170         193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD  272 (460)
T ss_pred             eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence            67999998642 222222   22     2458889999964 556677788999999999432110   1111    00 


Q ss_pred             -----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          165 -----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       165 -----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                           +-...|..+.|+++|++|++-             .=-+|+|||+++...
T Consensus       273 ~~ff~eivsSISD~kFs~ngryIlsR-------------dyltvkiwDvnm~k~  313 (460)
T COG5170         273 VDFFEEIVSSISDFKFSDNGRYILSR-------------DYLTVKIWDVNMAKN  313 (460)
T ss_pred             chhHHHHhhhhcceEEcCCCcEEEEe-------------ccceEEEEecccccC
Confidence                 123567889999988888764             135789999987654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.21  E-value=4.2e-05  Score=78.35  Aligned_cols=156  Identities=10%  Similarity=0.010  Sum_probs=106.1

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEE
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLA  129 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLa  129 (633)
                      +|+.|+.-|...+|...+.+.....+..|...|+-+.=.. ....+..++.|.+++++++.-+....... ..-.+.++.
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~  165 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH  165 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence            7999999999999999877755556666665443322111 34457788899999999887543322221 113388999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       130 fSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +++|++++++.+....|.+|.+......+...........-.+..|+            .....++.+..|+.+.|||+|
T Consensus       166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s------------~~~~~FAv~~Qdg~~~I~DVR  233 (344)
T KOG4532|consen  166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS------------ENDLQFAVVFQDGTCAIYDVR  233 (344)
T ss_pred             EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec------------cCcceEEEEecCCcEEEEEec
Confidence            99999999999999999999998653222211111222223344444            366677788899999999999


Q ss_pred             CCCCCCcccc
Q 006743          210 PSVTTSSVSL  219 (633)
Q Consensus       210 ~~~~~ss~s~  219 (633)
                      ....+....+
T Consensus       234 ~~~tpm~~~s  243 (344)
T KOG4532|consen  234 NMATPMAEIS  243 (344)
T ss_pred             ccccchhhhc
Confidence            8877665433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.21  E-value=2.3e-06  Score=87.10  Aligned_cols=145  Identities=15%  Similarity=0.190  Sum_probs=96.4

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceeeE-eeCCCCe
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-----DKKLYTYDPGSRRPSSC-ITYEAPF  125 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~-----DGtVrIWDlrtgk~v~~-i~h~~~I  125 (633)
                      -++++..||.+.+++.+......+.+..-...-.+.+....++.+.++..     -+..++|+++-.+.... ......|
T Consensus       103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v  182 (319)
T KOG4714|consen  103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV  182 (319)
T ss_pred             ceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence            58999999999999987522111111111111122223334444444331     22466777664332221 1233459


Q ss_pred             EEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743          126 SSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (633)
Q Consensus       126 tsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik  204 (633)
                      .+++-+|. .+.+++|+.||.|-+||.|+...+...+.  .|..+|..+-|+|.           +...|++++.||.+.
T Consensus       183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~--ahk~~i~eV~FHpk-----------~p~~Lft~sedGslw  249 (319)
T KOG4714|consen  183 TALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK--AHKAEIWEVHFHPK-----------NPEHLFTCSEDGSLW  249 (319)
T ss_pred             hhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH--HhhhhhhheeccCC-----------CchheeEecCCCcEE
Confidence            99999995 56777899999999999999876766666  89999999999995           566778888999999


Q ss_pred             ccCCC
Q 006743          205 MPDPL  209 (633)
Q Consensus       205 IWDlr  209 (633)
                      .||-.
T Consensus       250 ~wdas  254 (319)
T KOG4714|consen  250 HWDAS  254 (319)
T ss_pred             EEcCC
Confidence            99874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.21  E-value=0.00084  Score=71.39  Aligned_cols=189  Identities=13%  Similarity=0.166  Sum_probs=124.4

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCC-Ccee---EEEeC----CC----CCcEEEEEEccCCCeEEEEEe-CCCeEEEEE
Q 006743            1 MYNCKDEHLASISL-SGDLILHNLAS-GAKA---AELKD----PN----EQVLRVLDYSRNSRHLLVTAG-DDGTLHLWD   66 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG~I~IWDl~t-gk~v---~~~~~----~~----~~~VssLafSpdg~~lLaSGs-~DGtI~IWD   66 (633)
                      +++++|++|+++.. .|.|.++-++. |...   ..+..    .|    ..-+....+.|+++ +|++.+ .-..|.+|+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEE
Confidence            35788999998875 57899999865 4322   22221    11    11167788999998 455544 455799999


Q ss_pred             CCCCCce---eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC--ce--eeEe-------eCCCCeEEEEEe
Q 006743           67 TTGRSPK---VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSR--RP--SSCI-------TYEAPFSSLAFI  131 (633)
Q Consensus        67 l~t~~~~---v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtg--k~--v~~i-------~h~~~ItsLafS  131 (633)
                      +..+...   ...+ .-...-+.|.|+|++++..+.+ -+++|-+|.....  +.  ++.+       .......++.++
T Consensus       174 ~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         174 LDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             cccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            9865522   1112 3345568899999999987776 4789999998763  22  2222       135568889999


Q ss_pred             cCCCEEEEEEc-CCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCC
Q 006743          132 DDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAE  191 (633)
Q Consensus       132 PdG~~LatGs~-DGsV~IWDlrs~~k~v~~l~~~-~H~~~VtsLafsPdg~~Las~s~~sd~  191 (633)
                      +||++|.++.. ...|.+|.+......+...... .+......+.|++.+++|++....++.
T Consensus       253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~  314 (346)
T COG2706         253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN  314 (346)
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence            99999998865 3468888777543333333322 444557889999988888776444333

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.19  E-value=3.9e-05  Score=80.82  Aligned_cols=191  Identities=21%  Similarity=0.241  Sum_probs=135.3

Q ss_pred             CCCEEEEEECCCcEEEEEC-CCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccC
Q 006743            5 KDEHLASISLSGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQH   80 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl-~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---~~v~~l~~H   80 (633)
                      ...-+++.+.|.+++||-- +.++.-..+.......++++.+.++.+ .|+.|-..|++.-+.+...-   ...+....|
T Consensus        35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h  113 (404)
T KOG1409|consen   35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH  113 (404)
T ss_pred             CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence            3445788999999999953 345555555433457788899998876 79999999999999874322   124456689


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-~k~v~  159 (633)
                      ...|..+-|+-...++++.+.|..+..--.+.+..+.-........++.+.-.  +...|...|.|.+-.+... -.++.
T Consensus       114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~  191 (404)
T KOG1409|consen  114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLIT  191 (404)
T ss_pred             hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEE
Confidence            99999999999999999999999877666666655433322233333333322  6667777788777666543 23334


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .++  +|.+.+++++|.+            ...+++++..|..+.+||+.-..
T Consensus       192 ~~~--~h~~~~~~l~Wd~------------~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  192 TFN--GHTGEVTCLKWDP------------GQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             EEc--CcccceEEEEEcC------------CCcEEEeccccCceEEEeccCCc
Confidence            444  8999999999998            55666777889999999996443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.15  E-value=0.00017  Score=74.67  Aligned_cols=153  Identities=10%  Similarity=0.108  Sum_probs=104.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeC------CCCCcEEEEEEccCC-----CeEEEEEeCCCeEEEEECCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD------PNEQVLRVLDYSRNS-----RHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~------~~~~~VssLafSpdg-----~~lLaSGs~DGtI~IWDl~t   69 (633)
                      +|+||+..||.+...|+|++||+.. ..+..+..      .....|..+.|.+..     ...|+.-..+|.++-|-+..
T Consensus        50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~  128 (282)
T PF15492_consen   50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV  128 (282)
T ss_pred             EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence            6999999999999999999999854 44444332      223566667775432     23567778888888887632


Q ss_pred             C--Cc--eeEE--e-ccCCCCeEEEEEcCCCCEEEEEeCCC-----------eEEEEeCCCCce----------------
Q 006743           70 R--SP--KVSW--L-KQHSAPTAGISFSSDDKIIASVGLDK-----------KLYTYDPGSRRP----------------  115 (633)
Q Consensus        70 ~--~~--~v~~--l-~~H~~~VtsLafSPdg~~LaSgS~DG-----------tVrIWDlrtgk~----------------  115 (633)
                      +  +.  ..+.  + ..+...|.++.++|..++|++|+...           -+..|-+-++.+                
T Consensus       129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~  208 (282)
T PF15492_consen  129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS  208 (282)
T ss_pred             ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccc
Confidence            1  11  1111  2 23467899999999989888876321           245554422111                


Q ss_pred             -----ee-----Ee----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743          116 -----SS-----CI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       116 -----v~-----~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                           .+     .+    .....|..|..+|||..||+.+.+|.|.+|++.+.
T Consensus       209 ~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  209 KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence                 00     11    13567899999999999999999999999999875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=1.7e-05  Score=89.48  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=114.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce---------------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAK---------------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW   65 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~---------------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW   65 (633)
                      +|+.+..++|.|+.||.++|..+.+...               -+.+.+ |...|..+.|+.+.+ .|-+...+|.|.||
T Consensus        21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~Q-KLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQ-KLTTSDTSGLIIVW   98 (1189)
T ss_pred             EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccc-cccccCCCceEEEE
Confidence            4888899999999999999998865321               123444 677888899998877 79999999999999


Q ss_pred             ECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC
Q 006743           66 DTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG  144 (633)
Q Consensus        66 Dl~t~~~~v~~l-~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG  144 (633)
                      -+-.+......+ ......|.+++|+-||..|+.+-.||.|.+=.+...+....--.......+.|++|.+.++.+-.+|
T Consensus        99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ang  178 (1189)
T KOG2041|consen   99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANG  178 (1189)
T ss_pred             eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCC
Confidence            986655322222 2345678999999999999999999998887766544322211223345788999999999999999


Q ss_pred             eEEEEECCC
Q 006743          145 RVVFYDIRG  153 (633)
Q Consensus       145 sV~IWDlrs  153 (633)
                      .+++||...
T Consensus       179 e~hlydnqg  187 (1189)
T KOG2041|consen  179 ETHLYDNQG  187 (1189)
T ss_pred             cEEEecccc
Confidence            999999874

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.09  E-value=0.00087  Score=69.49  Aligned_cols=195  Identities=14%  Similarity=0.168  Sum_probs=120.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCC--ceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--
Q 006743            2 YNCKDEHLASISLSGDLILHNLASG--AKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--   75 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tg--k~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~--   75 (633)
                      .+.||+.||+. .|..|.|-..++.  ..+.+.+.  ......+-++|+||+. +||.+...|+|++||+.+......  
T Consensus         5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~I~p   82 (282)
T PF15492_consen    5 LSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFVIPP   82 (282)
T ss_pred             ecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccceeEEcCc
Confidence            45788887765 6778888776553  23233222  2234456799999998 899999999999999987552211  


Q ss_pred             ---EeccCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEeCCCC-----ceeeEe----eCCCCeEEEEEecCCCEE
Q 006743           76 ---WLKQHSAPTAGISFSSD------DKIIASVGLDKKLYTYDPGSR-----RPSSCI----TYEAPFSSLAFIDDDWIL  137 (633)
Q Consensus        76 ---~l~~H~~~VtsLafSPd------g~~LaSgS~DGtVrIWDlrtg-----k~v~~i----~h~~~ItsLafSPdG~~L  137 (633)
                         ....-...|..+.|.+.      ...|++...+|.++-|-+..+     +....+    .+...|.++.++|.-+.|
T Consensus        83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL  162 (282)
T PF15492_consen   83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL  162 (282)
T ss_pred             ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence               11122356777878652      225778888888887765322     222232    257889999999998888


Q ss_pred             EEEEcC----C-------eEEEEECCCCCCceEEEeec--------------------------CCCCCeeEEEEccCCC
Q 006743          138 TAGTSN----G-------RVVFYDIRGKPQPLTVLRAC--------------------------SSSEAVSSLCWQRAKP  180 (633)
Q Consensus       138 atGs~D----G-------sV~IWDlrs~~k~v~~l~~~--------------------------~H~~~VtsLafsPdg~  180 (633)
                      ++|+..    +       -+..|.+-+...-.+.....                          .....|..|..+|   
T Consensus       163 lVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP---  239 (282)
T PF15492_consen  163 LVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP---  239 (282)
T ss_pred             EEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC---
Confidence            777641    1       25667655432211111100                          1233444555555   


Q ss_pred             eEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          181 VFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       181 ~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                               ++..|++...+|.|.+|++-.
T Consensus       240 ---------dg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  240 ---------DGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             ---------CCCEEEEEEcCCeEEEEecCc
Confidence                     566666668899999998843

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.08  E-value=0.00021  Score=80.13  Aligned_cols=139  Identities=15%  Similarity=0.168  Sum_probs=95.3

Q ss_pred             CcEEEEEEccCCCeEEEEEe----CCCe----EEEEECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 006743           38 QVLRVLDYSRNSRHLLVTAG----DDGT----LHLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT  107 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs----~DGt----I~IWDl~t~~~~--v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI  107 (633)
                      +++ ++.|+...++.+.+..    .+|.    -.+|++...+..  ..+-......|.|++++|+...++.|+.||.|.+
T Consensus       207 dPl-~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPL-DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcE-EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            444 3677765555555532    3443    457777554422  1122356788999999999999999999999999


Q ss_pred             EeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE----------EE---eecCCCCCeeEEE
Q 006743          108 YDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT----------VL---RACSSSEAVSSLC  174 (633)
Q Consensus       108 WDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~----------~l---~~~~H~~~VtsLa  174 (633)
                      ||...+... .....-.++.++|+|+|.++++|+..|.+.+||+.-..-...          ++   ..+.+...+..+.
T Consensus       286 yD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iq  364 (545)
T PF11768_consen  286 YDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQ  364 (545)
T ss_pred             EEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeE
Confidence            999776433 335566788999999999999999999999999874321111          11   2224555667777


Q ss_pred             EccC
Q 006743          175 WQRA  178 (633)
Q Consensus       175 fsPd  178 (633)
                      |.+.
T Consensus       365 W~~~  368 (545)
T PF11768_consen  365 WAPA  368 (545)
T ss_pred             eccC
Confidence            7754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.07  E-value=0.0011  Score=67.40  Aligned_cols=162  Identities=15%  Similarity=0.168  Sum_probs=106.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEe---CC-CCCcEEEEEEccCCCeEEEEEeCC--------CeEEEEECCCCCce
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELK---DP-NEQVLRVLDYSRNSRHLLVTAGDD--------GTLHLWDTTGRSPK   73 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~---~~-~~~~VssLafSpdg~~lLaSGs~D--------GtI~IWDl~t~~~~   73 (633)
                      +..|+.+..+ .+.++|..+++....+.   .. .....+.+++.++|+ +.++....        |.|+.++.. .+  
T Consensus        51 ~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~--  125 (246)
T PF08450_consen   51 DGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK--  125 (246)
T ss_dssp             TSEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--
T ss_pred             CCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--
Confidence            3555556554 45666988886443332   22 346678899999998 66665443        557777777 33  


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCce----eeEe-e--C-CCCeEEEEEecCCCEEEEEEcCC
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRP----SSCI-T--Y-EAPFSSLAFIDDDWILTAGTSNG  144 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtgk~----v~~i-~--h-~~~ItsLafSPdG~~LatGs~DG  144 (633)
                      +..+...-...+.|+|+|+++.|+ +-+..+.|..||+.....    ...+ .  . .+....++++.+|++.++....+
T Consensus       126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~  205 (246)
T PF08450_consen  126 VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG  205 (246)
T ss_dssp             EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred             EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence            333444456689999999998775 556778899999863221    1122 1  2 23478899999999988888899


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 006743          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ  176 (633)
Q Consensus       145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafs  176 (633)
                      .|.++|.+ + +.+..+...  ...+++++|-
T Consensus       206 ~I~~~~p~-G-~~~~~i~~p--~~~~t~~~fg  233 (246)
T PF08450_consen  206 RIVVFDPD-G-KLLREIELP--VPRPTNCAFG  233 (246)
T ss_dssp             EEEEEETT-S-CEEEEEE-S--SSSEEEEEEE
T ss_pred             EEEEECCC-c-cEEEEEcCC--CCCEEEEEEE
Confidence            99999998 3 345556643  3489999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.05  E-value=9e-05  Score=89.50  Aligned_cols=172  Identities=16%  Similarity=0.189  Sum_probs=111.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc------------------------eeEEEeC----------------------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA------------------------KAAELKD----------------------   34 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk------------------------~v~~~~~----------------------   34 (633)
                      +||||++.|+.++.+|+|.+..- +..                        ....|.|                      
T Consensus       127 ~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~  205 (928)
T PF04762_consen  127 SWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK  205 (928)
T ss_pred             EECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence            59999999999999999887643 111                        1111111                      


Q ss_pred             --CCCCcEEEEEEccCCCeEEEEEeC---C---CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC---CC
Q 006743           35 --PNEQVLRVLDYSRNSRHLLVTAGD---D---GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---DK  103 (633)
Q Consensus        35 --~~~~~VssLafSpdg~~lLaSGs~---D---GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~---DG  103 (633)
                        .....+ .|.|-.||. +||+.+.   +   ..|+||+-++.-  ..+...-.+--.+++|.|.|++||+.-.   ..
T Consensus       206 ~s~dd~~~-~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG~L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~  281 (928)
T PF04762_consen  206 LSWDDGRV-RISWRGDGE-YFAVSSVEPETGSRRVIRVYSREGEL--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH  281 (928)
T ss_pred             cccCCCce-EEEECCCCc-EEEEEEEEcCCCceeEEEEECCCceE--EeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence              011233 388999998 6776653   2   579999987431  2222233334467899999999999875   34


Q ss_pred             eEEEEeCCCCceeeEe-----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006743          104 KLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       104 tVrIWDlrtgk~v~~i-----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPd  178 (633)
                      .|.+|.- +|.....+     .....|..++|+.|+.+||+...|. |.+|-..+..--++.--.+.....+..+.|+|.
T Consensus       282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence            5677763 33333222     2456799999999999999988766 999999886322222222334455666999995


Q ss_pred             C
Q 006743          179 K  179 (633)
Q Consensus       179 g  179 (633)
                      .
T Consensus       360 ~  360 (928)
T PF04762_consen  360 K  360 (928)
T ss_pred             C
Confidence            3

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=0.00016  Score=80.09  Aligned_cols=196  Identities=10%  Similarity=0.185  Sum_probs=117.7

Q ss_pred             ccCCCCEEEEEEC-----------CCcEEEEECCCCceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006743            2 YNCKDEHLASISL-----------SGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (633)
Q Consensus         2 FSpdG~~LaSgs~-----------DG~I~IWDl~tgk~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~   68 (633)
                      |||+.+||++-+.           ...|+|||+.+|...+.|..  ........+.|+.|+. ++|.... ..|.||+..
T Consensus       257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtp  334 (698)
T KOG2314|consen  257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETP  334 (698)
T ss_pred             cCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecC
Confidence            8999999998532           24799999999998887765  2233445578999987 6665544 678999876


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC----------------C-----------------------------
Q 006743           69 GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD----------------K-----------------------------  103 (633)
Q Consensus        69 t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D----------------G-----------------------------  103 (633)
                      .-... ..-.-.-..|..+.|+|.+++||.=...                .                             
T Consensus       335 sf~ll-d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvd  413 (698)
T KOG2314|consen  335 SFMLL-DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVD  413 (698)
T ss_pred             ceeee-cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEE
Confidence            53311 1001112346666666666665532110                0                             


Q ss_pred             ------------eEEEEeCCCCc-eeeEeeCCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCC
Q 006743          104 ------------KLYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSS  167 (633)
Q Consensus       104 ------------tVrIWDlrtgk-~v~~i~h~~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~k~v~~l~~~~H~  167 (633)
                                  .+-|+.++... ++........|...+|-|.|+.+++-+.   ..+|.+|.+++.......+..+ ..
T Consensus       414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk  492 (698)
T KOG2314|consen  414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DK  492 (698)
T ss_pred             eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cc
Confidence                        11111111111 1112234556778899999988776544   3569999988432222222222 12


Q ss_pred             CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       168 ~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ...+.+.|+|.|++++.+.       ++  +..+.+..+|...
T Consensus       493 ~~~N~vfwsPkG~fvvva~-------l~--s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  493 KFANTVFWSPKGRFVVVAA-------LV--SRRGDLEFYDTDY  526 (698)
T ss_pred             cccceEEEcCCCcEEEEEE-------ec--ccccceEEEecch
Confidence            5577899999999998761       22  2567788888754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=2.3e-05  Score=88.40  Aligned_cols=146  Identities=12%  Similarity=0.188  Sum_probs=111.0

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------------eEEeccCCCCeEEEEEcCCCCEEEEEe
Q 006743           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------------VSWLKQHSAPTAGISFSSDDKIIASVG  100 (633)
Q Consensus        35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--------------v~~l~~H~~~VtsLafSPdg~~LaSgS  100 (633)
                      +....+.|+.|+.... ++++|+.||.++|..+.+....              -+++.+|+..|..+.|+.+.+.|-+..
T Consensus        12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            3456688999998876 8999999999999988543211              346789999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          101 LDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       101 ~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      .+|.|.+|-+-.+.-.-..   ..+..|.+++|+-||..|...-.||.|.+=.+....    ++...-.......+.|++
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR----IwgKeLkg~~l~hv~ws~  166 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR----IWGKELKGQLLAHVLWSE  166 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce----ecchhcchheccceeecc
Confidence            9999999999877644333   356779999999999999999999999887777652    111111122345678888


Q ss_pred             CCCeEEEe
Q 006743          178 AKPVFIDE  185 (633)
Q Consensus       178 dg~~Las~  185 (633)
                      |.+.++..
T Consensus       167 D~~~~Lf~  174 (1189)
T KOG2041|consen  167 DLEQALFK  174 (1189)
T ss_pred             cHHHHHhh
Confidence            76655443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.02  E-value=1.3e-06  Score=97.65  Aligned_cols=194  Identities=14%  Similarity=0.177  Sum_probs=129.7

Q ss_pred             CCEEEEEECCCcEEEEECCCCcee-EEEeCCCCCcEEEEEEccCCCeEEEEEe----CCCeEEEEECCCC--Cce--eEE
Q 006743            6 DEHLASISLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAG----DDGTLHLWDTTGR--SPK--VSW   76 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v-~~~~~~~~~~VssLafSpdg~~lLaSGs----~DGtI~IWDl~t~--~~~--v~~   76 (633)
                      ...+++|..+|.|.+-.+....-- .++...+...+++++|++-+.+.||+|-    .|-.+.|||+...  .++  ...
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f  149 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF  149 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence            346788999999999887654332 5555567778899999997766788774    3567999999765  221  111


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEE-CCCC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYD-IRGK  154 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWD-lrs~  154 (633)
                      ..+.......++|..+.+++++|...+.++++|+|........-....+..+...| .+.|++.-. ||.|-+|| .++-
T Consensus       150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni  228 (783)
T KOG1008|consen  150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI  228 (783)
T ss_pred             ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh
Confidence            11234456689999999999999999999999998432221111233566677788 566665544 99999999 6665


Q ss_pred             CCceEEEeecC--CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          155 PQPLTVLRACS--SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       155 ~k~v~~l~~~~--H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +.++..+....  ....+..++|+|..          .+.+.+..-..+.|+.+|++.
T Consensus       229 enpl~~i~~~~N~~~~~l~~~aycPtr----------tglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  229 ENPLQIILRNENKKPKQLFALAYCPTR----------TGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccHHHHHhhCCCCcccceeeEEeccCC----------cchhhhhccCcceEEEecccc
Confidence            55554443111  11248999999942          334444444567888888854

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00038  Score=80.61  Aligned_cols=181  Identities=18%  Similarity=0.296  Sum_probs=123.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe-----EEEEECCCC---C-
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-----LHLWDTTGR---S-   71 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt-----I~IWDl~t~---~-   71 (633)
                      +|++.+..+|.|+.+|.|.+++ ..-+.+..++....+.|.. -|.-+++++|++.+.|+.     |+|||++..   . 
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~-L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQF-LYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhH-hhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4778889999999999999988 3455557777644444543 455566568888877654     999999533   1 


Q ss_pred             ce-e--EEecc-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC---CCC--ceeeEeeCCCCeEEEEEecCCCEEE
Q 006743           72 PK-V--SWLKQ-----HSAPTAGISFSSDDKIIASVGLDKKLYTYDP---GSR--RPSSCITYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        72 ~~-v--~~l~~-----H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl---rtg--k~v~~i~h~~~ItsLafSPdG~~La  138 (633)
                      +. +  +.+..     ...++.+++.+.+-+.+|+|-.||.|..+.-   |..  +.......+.+|+.+++..++.-++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            11 1  12222     2457889999999999999999999998842   111  2222234678999999999988744


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      -...-..|.+|.+.+......++.  .|...+.|..+++....++++
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld--~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLD--NNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeec--cCCccceeeecCCCCccEEEe
Confidence            444446799999986542233344  678889999998866534443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.01  E-value=1.5e-05  Score=83.97  Aligned_cols=154  Identities=13%  Similarity=0.124  Sum_probs=112.1

Q ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeeE
Q 006743           44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-----RPSSC  118 (633)
Q Consensus        44 afSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-----k~v~~  118 (633)
                      +|+-+-.-+-++.+.+-.|-+-|++++-  .+.+ .....|.++.|.-.+++++.|+.+|.|..+|+|.+     .+...
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~--~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGH--QQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeeccc--cccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            5654322233566677888888988775  2333 36678999999988999999999999999999864     45667


Q ss_pred             eeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006743          119 ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG  197 (633)
Q Consensus       119 i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg  197 (633)
                      +-|...|+++..-. ++.+|++.+-+|+|.+||+|..+....+..-.+|...-.-+-++-          ...+..++++
T Consensus       295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v----------~~eeg~I~s~  364 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV----------KEEEGSIFSV  364 (425)
T ss_pred             EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc----------ccccceEEEc
Confidence            78999999998877 788999999999999999997643222333226654444333332          2255566667


Q ss_pred             eCCCeEEccCCCC
Q 006743          198 AVGDSILMPDPLP  210 (633)
Q Consensus       198 s~Dg~IkIWDlr~  210 (633)
                      +.|...+||.++.
T Consensus       365 GdDcytRiWsl~~  377 (425)
T KOG2695|consen  365 GDDCYTRIWSLDS  377 (425)
T ss_pred             cCeeEEEEEeccc
Confidence            8899999998863

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.98  E-value=2.1e-05  Score=56.75  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=34.5

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD  109 (633)
                      +..+.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            577899999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.98  E-value=0.00049  Score=75.76  Aligned_cols=191  Identities=13%  Similarity=0.162  Sum_probs=127.4

Q ss_pred             ccCCCCEEEEEECCC---------------cEEEEECCCCceeEEEeCCCCC--cEEEEEEccCCCeEEEEEeCCCeEEE
Q 006743            2 YNCKDEHLASISLSG---------------DLILHNLASGAKAAELKDPNEQ--VLRVLDYSRNSRHLLVTAGDDGTLHL   64 (633)
Q Consensus         2 FSpdG~~LaSgs~DG---------------~I~IWDl~tgk~v~~~~~~~~~--~VssLafSpdg~~lLaSGs~DGtI~I   64 (633)
                      |+|+++||.+-...+               .+.+||..+|..+..+......  ....+.|+-++. +++-. ....++|
T Consensus        79 fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i  156 (561)
T COG5354          79 FSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK-YVARV-VGSSLYI  156 (561)
T ss_pred             cCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch-hhhhh-ccCeEEE
Confidence            789999999865443               4999999999999988764433  233678988876 44333 4567999


Q ss_pred             EECCCCCce--eEEeccCCCCeEEEEEcCC--CCEEEE-----EeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCC
Q 006743           65 WDTTGRSPK--VSWLKQHSAPTAGISFSSD--DKIIAS-----VGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDD  134 (633)
Q Consensus        65 WDl~t~~~~--v~~l~~H~~~VtsLafSPd--g~~LaS-----gS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG  134 (633)
                      +++...-..  .+.++  ...|....|+|.  +..|+.     .+.++.+++|.+..+..+.... .+..-..+.|++.|
T Consensus       157 ~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g  234 (561)
T COG5354         157 HEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG  234 (561)
T ss_pred             EecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence            997322211  11222  356888999994  444554     4567899999998766665443 23334458899999


Q ss_pred             CEEEEEE-----------cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeE
Q 006743          135 WILTAGT-----------SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI  203 (633)
Q Consensus       135 ~~LatGs-----------~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~I  203 (633)
                      ++|++-.           ....++|+++.....++..    .-.++|...+|.|.++.++          ++.|-.+..+
T Consensus       235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~----~~~~pVhdf~W~p~S~~F~----------vi~g~~pa~~  300 (561)
T COG5354         235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK----DLKDPVHDFTWEPLSSRFA----------VISGYMPASV  300 (561)
T ss_pred             ceEEEEEEEeeecccceeccceEEEEeecccccceec----cccccceeeeecccCCcee----------EEecccccce
Confidence            8876431           1245889998865443332    3568999999999755443          4455667777


Q ss_pred             EccCCCC
Q 006743          204 LMPDPLP  210 (633)
Q Consensus       204 kIWDlr~  210 (633)
                      .++|++-
T Consensus       301 s~~~lr~  307 (561)
T COG5354         301 SVFDLRG  307 (561)
T ss_pred             eeccccc
Confidence            8888763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.96  E-value=0.00037  Score=84.28  Aligned_cols=190  Identities=18%  Similarity=0.231  Sum_probs=125.2

Q ss_pred             ccCCCCEEEEEECCCcEEEE----ECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Q 006743            2 YNCKDEHLASISLSGDLILH----NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--------   69 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IW----Dl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t--------   69 (633)
                      |-++...++.+..+|.|.++    +..+  ...++.+.....|.+++|+||++ +|+....+++|.+.+..-        
T Consensus        83 yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l  159 (928)
T PF04762_consen   83 YLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPL  159 (928)
T ss_pred             eccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeec
Confidence            34566677888899999999    4433  23333344567899999999998 788888888888774310        


Q ss_pred             -----C--Cc-------eeEE-------------------------eccCCCCeEEEEEcCCCCEEEEEeC---C---Ce
Q 006743           70 -----R--SP-------KVSW-------------------------LKQHSAPTAGISFSSDDKIIASVGL---D---KK  104 (633)
Q Consensus        70 -----~--~~-------~v~~-------------------------l~~H~~~VtsLafSPdg~~LaSgS~---D---Gt  104 (633)
                           +  +.       +...                         +. +...-..|+|-.||.+||+.+-   +   +.
T Consensus       160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~  238 (928)
T PF04762_consen  160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRV  238 (928)
T ss_pred             CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence                 0  00       0000                         11 2334567899999999998774   2   58


Q ss_pred             EEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC
Q 006743          105 LYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP  180 (633)
Q Consensus       105 VrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~  180 (633)
                      ||||+-+ |.....- ...+--.+++|.|.|++||+...   ...|.+|.-+....-...+........|..++|++++.
T Consensus       239 iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~  317 (928)
T PF04762_consen  239 IRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE  317 (928)
T ss_pred             EEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence            9999965 5544333 23444567899999999998765   35588887665432223333224567799999999999


Q ss_pred             eEEEeccCCCCeEEEEee
Q 006743          181 VFIDETTCKAETALLGGA  198 (633)
Q Consensus       181 ~Las~s~~sd~~lLlSgs  198 (633)
                      .|+...  .+...|++.+
T Consensus       318 iLAv~~--~~~vqLWt~~  333 (928)
T PF04762_consen  318 ILAVWL--EDRVQLWTRS  333 (928)
T ss_pred             EEEEEe--cCCceEEEee
Confidence            988752  3445566554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=3.1e-06  Score=97.00  Aligned_cols=186  Identities=16%  Similarity=0.197  Sum_probs=128.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG-tI~IWDl~t~~~~v~~l~~   79 (633)
                      ||+-+.++|++|...|.|++|++.+|.....+.+ |...|+.|.=+.+|...|.+++... -..+|++......++.+.+
T Consensus      1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred             EeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence            5788889999999999999999999998888876 6777888888889985555555555 5789999654434454433


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                          -.++.|+..-..-+.|+......+||+.++.+...+     +....-++..|+|+...|+   .||  .+||+|..
T Consensus      1187 ----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1187 ----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred             ----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccH
Confidence                356788864433344555567899999998776542     2223347788999887765   455  57999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                       +.++.+..+.   --..-.|+|+|..++..            +     .|||+|.|.-.++.
T Consensus      1258 -~aIh~FD~ft---~~~~G~FHP~g~eVIIN------------S-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1258 -EAIHRFDQFT---DYGGGGFHPSGNEVIIN------------S-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             -HHHhhhhhhe---ecccccccCCCceEEee------------c-----hhhhhHHHHHHhcC
Confidence             3334333221   11223588876655543            1     48999998876543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.95  E-value=0.0021  Score=69.66  Aligned_cols=142  Identities=6%  Similarity=0.027  Sum_probs=97.1

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCC
Q 006743            5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTGR   70 (633)
Q Consensus         5 dG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs---------~DGtI~IWDl~t~   70 (633)
                      +++++++-...     +.|.+.|..+++.+..+.......  .+ ++|+++.++++..         .+..|.+||..+.
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~   87 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH   87 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence            34555544333     899999999999998888644333  34 8999997777777         7999999999998


Q ss_pred             CceeEEeccC-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743           71 SPKVSWLKQH-------SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        71 ~~~v~~l~~H-------~~~VtsLafSPdg~~LaSgS~--DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs  141 (633)
                      +.. ..+.--       ......++++|||+++++...  +..|.++|+.+++.+..+...+...-...+.+..++  -+
T Consensus        88 ~~~-~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~--~~  164 (352)
T TIGR02658        88 LPI-ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM--HC  164 (352)
T ss_pred             cEE-eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE--Ee
Confidence            853 333321       223457899999999998773  679999999999999988765444333443333332  23


Q ss_pred             cCCeEEEEECC
Q 006743          142 SNGRVVFYDIR  152 (633)
Q Consensus       142 ~DGsV~IWDlr  152 (633)
                      .||......+.
T Consensus       165 ~Dg~~~~v~~d  175 (352)
T TIGR02658       165 RDGSLAKVGYG  175 (352)
T ss_pred             ecCceEEEEec
Confidence            45554444443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00035  Score=80.39  Aligned_cols=135  Identities=16%  Similarity=0.204  Sum_probs=100.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      .++.|+.|..+|.|++++... .. ..... |...      ..+|. ++++|+.||+|.|-.+-+...  .+......++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~-~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~--~~~~df~rpi  115 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQG-NP-KTNFD-HSSS------ILEGE-YVASCSDDGKVVIGSLFTDDE--ITQYDFKRPI  115 (846)
T ss_pred             hcceeeeccccceEEEEecCC-cc-ccccc-cccc------ccCCc-eEEEecCCCcEEEeeccCCcc--ceeEecCCcc
Confidence            367899999999999999743 33 22222 2222      45677 899999999999999876663  2223456889


Q ss_pred             EEEEEcCC-----CCEEEEEeCCCeEEEEeCC---CCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           85 AGISFSSD-----DKIIASVGLDKKLYTYDPG---SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        85 tsLafSPd-----g~~LaSgS~DGtVrIWDlr---tgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      ..++++|+     .+.+++|+..| +.++.-+   ....+......++|.++.|.  |++||-++.+| |+|||.....
T Consensus       116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~  190 (846)
T KOG2066|consen  116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ  190 (846)
T ss_pred             eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccc
Confidence            99999997     67899999998 7777643   22333334578999999997  88999998888 9999998763

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.91  E-value=0.0037  Score=66.19  Aligned_cols=196  Identities=16%  Similarity=0.169  Sum_probs=132.2

Q ss_pred             ccC-CCCEEEEEECCCc-EEEEECCCCceeEEEeCCCCCcEE-EEEEccCCCeEEEEEe-----CCCeEEEEECCCCCce
Q 006743            2 YNC-KDEHLASISLSGD-LILHNLASGAKAAELKDPNEQVLR-VLDYSRNSRHLLVTAG-----DDGTLHLWDTTGRSPK   73 (633)
Q Consensus         2 FSp-dG~~LaSgs~DG~-I~IWDl~tgk~v~~~~~~~~~~Vs-sLafSpdg~~lLaSGs-----~DGtI~IWDl~t~~~~   73 (633)
                      .+| .+..++.+-.-|+ ..+||..+++....+......-.+ .-+|+++|+ +|++.-     ..|.|-|||....-..
T Consensus        12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~r   90 (305)
T PF07433_consen   12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDAARGYRR   90 (305)
T ss_pred             eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEECcCCcEE
Confidence            466 4456666766665 678999999988777643222111 357999999 555543     3578999999954445


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe------------------CCCeEEEEeCCCCceeeEee-----CCCCeEEEEE
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVG------------------LDKKLYTYDPGSRRPSSCIT-----YEAPFSSLAF  130 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS------------------~DGtVrIWDlrtgk~v~~i~-----h~~~ItsLaf  130 (633)
                      +..+..|.-.-..+.+.||++.|+++.                  .+-.|.+.|.++|+.+....     |.-.|..+++
T Consensus        91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~  170 (305)
T PF07433_consen   91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV  170 (305)
T ss_pred             EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence            677778877788899999998887763                  23357778888888776532     5668999999


Q ss_pred             ecCCCEEEEEEcCCe-------EEEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743          131 IDDDWILTAGTSNGR-------VVFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (633)
Q Consensus       131 SPdG~~LatGs~DGs-------V~IWDlrs~~k~v~~l~~~-----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs  198 (633)
                      .++|..++..-..|.       |.+++....   +..+...     .-.+.|-+|++++++.+++.           ++-
T Consensus       171 ~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~-----------tsP  236 (305)
T PF07433_consen  171 DGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV-----------TSP  236 (305)
T ss_pred             cCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEE-----------ECC
Confidence            999988777665543       555554432   1222211     23477889999887655543           444


Q ss_pred             CCCeEEccCCCCCC
Q 006743          199 VGDSILMPDPLPSV  212 (633)
Q Consensus       199 ~Dg~IkIWDlr~~~  212 (633)
                      ..+.+.+||...-.
T Consensus       237 rGg~~~~~d~~tg~  250 (305)
T PF07433_consen  237 RGGRVAVWDAATGR  250 (305)
T ss_pred             CCCEEEEEECCCCC
Confidence            56777788765433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.85  E-value=0.0025  Score=63.53  Aligned_cols=184  Identities=15%  Similarity=0.081  Sum_probs=109.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC---
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS---   81 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~---   81 (633)
                      +++++++++.++.|+.||..+|+.+..+..... ..... ...+ . .++.+..++.|+.+|..+++..-.......   
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~-~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDG-G-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEET-T-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecc-c-ccccccceeeeEecccCCcceeeeecccccccc
Confidence            577888889999999999999998887774221 11111 2223 3 466677888999999988884333112111   


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCC-C----------eEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA-P----------FSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~-~----------ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      ..........++..++.+..++.|..+|+++|+.+....... .          +..-....++ .++.+..++.+..+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d  189 (238)
T PF13360_consen  111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD  189 (238)
T ss_dssp             STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred             ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence            111222233348888999989999999999999876663221 1          1122222234 777788788644449


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +.+++..   ....  ...+..+ ...           .++.+++.. .++.|..||++..
T Consensus       190 ~~tg~~~---w~~~--~~~~~~~-~~~-----------~~~~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  190 LATGEKL---WSKP--ISGIYSL-PSV-----------DGGTLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             TTTTEEE---EEEC--SS-ECEC-EEC-----------CCTEEEEEE-TTTEEEEEETTTT
T ss_pred             CCCCCEE---EEec--CCCccCC-cee-----------eCCEEEEEe-CCCEEEEEECCCC
Confidence            9988422   2211  1112211 111           234444444 7899999998653

...

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=7.1e-05  Score=82.48  Aligned_cols=146  Identities=18%  Similarity=0.242  Sum_probs=102.9

Q ss_pred             CCCEEEEEECCCcEEEEECCC-Cc------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            5 KDEHLASISLSGDLILHNLAS-GA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~t-gk------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +.+.++++++|.+|++|.++. +.      +..+++. |+..|..+.|..+.+ +++  +.||-|++||---+....+..
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr-~i~--ScD~giHlWDPFigr~Laq~~  821 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLR-SIA--SCDGGIHLWDPFIGRLLAQME  821 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccc-eee--eccCcceeecccccchhHhhh
Confidence            456788999999999999863 11      3334444 777889999998876 444  568999999974444322111


Q ss_pred             --ccCCCCeEEEEEcC--CCCEE-EEEeCCCeEEEEeCCCCceeeEee------CCCCeEEEEEecCCCEEEEEEcCCeE
Q 006743           78 --KQHSAPTAGISFSS--DDKII-ASVGLDKKLYTYDPGSRRPSSCIT------YEAPFSSLAFIDDDWILTAGTSNGRV  146 (633)
Q Consensus        78 --~~H~~~VtsLafSP--dg~~L-aSgS~DGtVrIWDlrtgk~v~~i~------h~~~ItsLafSPdG~~LatGs~DGsV  146 (633)
                        ..| +.+..+..-+  +...+ +-++...+|+++|.|.+..+..+.      ..+.+.+++..+.|++++++-.+|.|
T Consensus       822 dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci  900 (1034)
T KOG4190|consen  822 DAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI  900 (1034)
T ss_pred             cCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence              122 2233333333  33333 344778899999999887665552      34568999999999999999999999


Q ss_pred             EEEECCCCC
Q 006743          147 VFYDIRGKP  155 (633)
Q Consensus       147 ~IWDlrs~~  155 (633)
                      .+.|.|+++
T Consensus       901 ~~LDaR~G~  909 (1034)
T KOG4190|consen  901 AILDARNGK  909 (1034)
T ss_pred             EEEecCCCc
Confidence            999999983

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.00085  Score=77.34  Aligned_cols=141  Identities=21%  Similarity=0.271  Sum_probs=104.5

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC----CCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN----SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ   79 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd----g~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~   79 (633)
                      +|+++++|+.||+|.|..+-+.+..+.+.  -...+.+|+++|+    ....+++|+..| +.++.-.--... -..+..
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~  158 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE  158 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence            69999999999999999998888877765  3467888999998    223689999989 888875321111 123566


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-------CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h-------~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ..++|.++.|.  |++||-++.+| |++||+.+++.+..+..       ......+.|.++. .|+.| +..+|+|..++
T Consensus       159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence            77999999998  89999999888 89999999887766632       1223457777554 44444 44568888887


Q ss_pred             C
Q 006743          153 G  153 (633)
Q Consensus       153 s  153 (633)
                      .
T Consensus       234 ~  234 (846)
T KOG2066|consen  234 K  234 (846)
T ss_pred             c
Confidence            3

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.78  E-value=6.6e-05  Score=54.13  Aligned_cols=37  Identities=22%  Similarity=0.402  Sum_probs=33.0

Q ss_pred             ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743          114 RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus       114 k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      +++..+ .|...|.+|+|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            345555 6899999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.77  E-value=0.0027  Score=68.61  Aligned_cols=142  Identities=12%  Similarity=0.163  Sum_probs=94.8

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      .+.++++++.+|.|+.+|..+|+.+-.+.... .....+..  ++. .++.++.++.|+.+|..+++.  .+.......+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v--~~~-~v~v~~~~g~l~ald~~tG~~--~W~~~~~~~~  137 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGA--DGG-LVFVGTEKGEVIALDAEDGKE--LWRAKLSSEV  137 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEE--cCC-EEEEEcCCCEEEEEECCCCcE--eeeeccCcee
Confidence            36678889999999999999999887665322 11122222  344 577888999999999988873  2222222333


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeE------EEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS------SLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~It------sLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      .+.-.. .+..++.++.++.|+.||.++++.+..........      +....  +..++.+..+|.|+.+|+++++
T Consensus       138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~  211 (377)
T TIGR03300       138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ  211 (377)
T ss_pred             ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence            221111 45677888889999999999998876654332221      11222  3477888889999999998874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.76  E-value=0.006  Score=64.68  Aligned_cols=170  Identities=13%  Similarity=0.090  Sum_probs=109.0

Q ss_pred             CccCCCCEEEEEEC-----CCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----------------
Q 006743            1 MYNCKDEHLASISL-----SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----------------   57 (633)
Q Consensus         1 AFSpdG~~LaSgs~-----DG~I~IWDl~-tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs-----------------   57 (633)
                      +|++||++|++.-+     .|.|-|||.. +.+.+.++..+- -.-..+.+.|+++ .|+.+.                 
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G-IGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG-IGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC-cChhhEEEcCCCC-EEEEEcCCCccCcccCceecChh
Confidence            58999999998643     4789999998 667788887533 2234578999997 344431                 


Q ss_pred             -CCCeEEEEECCCCCceeE-Ee--ccCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEeCCCCceeeEe-------
Q 006743           58 -DDGTLHLWDTTGRSPKVS-WL--KQHSAPTAGISFSSDDKIIASVGLDK-------KLYTYDPGSRRPSSCI-------  119 (633)
Q Consensus        58 -~DGtI~IWDl~t~~~~v~-~l--~~H~~~VtsLafSPdg~~LaSgS~DG-------tVrIWDlrtgk~v~~i-------  119 (633)
                       .+-.+..-|..+++...+ .+  ..|...|..+++.++|..++..-..+       .|-+++...  ....+       
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~  212 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQW  212 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHH
Confidence             112345555566653222 23  34677899999999988776665544       344444433  22222       


Q ss_pred             -eCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 006743          120 -TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (633)
Q Consensus       120 -~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg  179 (633)
                       ...+.|-+|++++++..+++.+ .-+.+.+||..++. .+..    ..-.-++.++-.+++
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~----~~l~D~cGva~~~~~  269 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-LLGS----VPLPDACGVAPTDDG  269 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-Eeec----cccCceeeeeecCCc
Confidence             2467899999999998776554 56889999999873 2221    122345666655543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.74  E-value=0.00079  Score=75.56  Aligned_cols=132  Identities=17%  Similarity=0.223  Sum_probs=87.3

Q ss_pred             EEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEe----CCC----eEEEEeCCCCcee----eEeeCCCCeEEE
Q 006743           62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVG----LDK----KLYTYDPGSRRPS----SCITYEAPFSSL  128 (633)
Q Consensus        62 I~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS----~DG----tVrIWDlrtgk~v----~~i~h~~~ItsL  128 (633)
                      +.+|.+...+..+.....-.....++.|+- +++.+.+..    .+|    .-++|++..++..    ..+..+..+.|+
T Consensus       186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c  265 (545)
T PF11768_consen  186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC  265 (545)
T ss_pred             EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence            444444443322222222334457778887 666676653    344    3456777654432    234688999999


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       129 afSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +++|+...++.|+.||.|.+||...+.   ....  .+.-..+.++|+|+|-+            ++.++..|.+.+||+
T Consensus       266 a~sp~E~kLvlGC~DgSiiLyD~~~~~---t~~~--ka~~~P~~iaWHp~gai------------~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  266 ARSPSEDKLVLGCEDGSIILYDTTRGV---TLLA--KAEFIPTLIAWHPDGAI------------FVVGSEQGELQCFDM  328 (545)
T ss_pred             ecCcccceEEEEecCCeEEEEEcCCCe---eeee--eecccceEEEEcCCCcE------------EEEEcCCceEEEEEe
Confidence            999999999999999999999998752   2222  23456788999995544            444566899999998


Q ss_pred             CC
Q 006743          209 LP  210 (633)
Q Consensus       209 r~  210 (633)
                      -.
T Consensus       329 AL  330 (545)
T PF11768_consen  329 AL  330 (545)
T ss_pred             ec
Confidence            64

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.74  E-value=0.0022  Score=63.89  Aligned_cols=137  Identities=20%  Similarity=0.122  Sum_probs=89.5

Q ss_pred             CCCcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 006743           14 LSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD   92 (633)
Q Consensus        14 ~DG~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPd   92 (633)
                      .+|.|..||..+|+.+....... .....+..+ +++. .+++++.++.|+.||..+++..  +-......+.... ..+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~--W~~~~~~~~~~~~-~~~   75 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVL--WRFDLPGPISGAP-VVD   75 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEE--EEEECSSCGGSGE-EEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEE--EEeecccccccee-eec
Confidence            37899999999999988876421 122221122 2344 5777789999999999888732  2222223222211 224


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeEe-eCC----CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           93 DKIIASVGLDKKLYTYDPGSRRPSSCI-TYE----APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        93 g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~----~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      +..++++..|+.|+.+|.++++.+... ...    .....+....++..++++..++.|+.+|+++++
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            667777778889999999999988774 211    122233333348889999999999999999984

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.72  E-value=0.0032  Score=68.03  Aligned_cols=145  Identities=19%  Similarity=0.151  Sum_probs=90.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      ++..+++++.+|.|+.+|..+|+.+...... .........  .+. .++.+..+|.|+.||..+++..  +........
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~-~v~v~~~~g~l~a~d~~tG~~~--W~~~~~~~~  177 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANG-LVVVRTNDGRLTALDAATGERL--WTYSRVTPA  177 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECC-EEEEECCCCeEEEEEcCCCcee--eEEccCCCc
Confidence            4677888999999999999999988766532 111111112  233 5677788999999999887732  211111111


Q ss_pred             EEEE--EcC--CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC--------eEEEEEec--CCCEEEEEEcCCeEEEEE
Q 006743           85 AGIS--FSS--DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--------FSSLAFID--DDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        85 tsLa--fSP--dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~--------ItsLafSP--dG~~LatGs~DGsV~IWD  150 (633)
                      ..+.  -+|  .+..++.+..++.+..+|+++++.+........        ...+.-.|  .+..+++++.+|.++.||
T Consensus       178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence            1110  011  235778888899999999999987644321100        00011111  356788888999999999


Q ss_pred             CCCCC
Q 006743          151 IRGKP  155 (633)
Q Consensus       151 lrs~~  155 (633)
                      .++++
T Consensus       258 ~~tG~  262 (377)
T TIGR03300       258 LRSGR  262 (377)
T ss_pred             CCCCc
Confidence            98874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.70  E-value=0.0046  Score=70.96  Aligned_cols=148  Identities=12%  Similarity=0.036  Sum_probs=98.2

Q ss_pred             cCCCCEEEEE-ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe------------------------
Q 006743            3 NCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------------------------   57 (633)
Q Consensus         3 SpdG~~LaSg-s~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs------------------------   57 (633)
                      .+||+.+... -..+.+.+.|.++.+....+..  ......+++++++...++++.                        
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            4566655333 2346677888877776666553  223345677777774333331                        


Q ss_pred             ---------------CCCeEEEEECCC----CCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce--
Q 006743           58 ---------------DDGTLHLWDTTG----RSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRP--  115 (633)
Q Consensus        58 ---------------~DGtI~IWDl~t----~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~--  115 (633)
                                     .++.|.+.|..+    ... +.....-......++++|||+++++++. +.+|.|+|+.+.+.  
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence                           124577777766    222 2223334456789999999999877764 78999999987542  


Q ss_pred             ----------eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743          116 ----------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus       116 ----------v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                                +............+|+++|+...+-.-|..|..||+..
T Consensus       358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                      33334455566788999998888888899999999875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.70  E-value=0.0015  Score=78.28  Aligned_cols=179  Identities=18%  Similarity=0.238  Sum_probs=117.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC----CCCce----
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----GRSPK----   73 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~----t~~~~----   73 (633)
                      |..+++.++.+..+|.|.+-|.++....  +-+.....|.+++|+||++ +++....++++.+-+-.    ..+..    
T Consensus        76 fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~i~E~~L~~d~  152 (1265)
T KOG1920|consen   76 FLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEPIAEKPLDADD  152 (1265)
T ss_pred             EecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccchhcccccccc
Confidence            3456677888899999999988765432  2333456788999999998 77877877887766431    00000    


Q ss_pred             --------------eEEeccC---------------------CCCeEEEEEcCCCCEEEE-----EeCCCeEEEEeCCCC
Q 006743           74 --------------VSWLKQH---------------------SAPTAGISFSSDDKIIAS-----VGLDKKLYTYDPGSR  113 (633)
Q Consensus        74 --------------v~~l~~H---------------------~~~VtsLafSPdg~~LaS-----gS~DGtVrIWDlrtg  113 (633)
                                    ...+.+.                     ...=+.|.|--||.+|++     ....+.|++||-+ +
T Consensus       153 ~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g  231 (1265)
T KOG1920|consen  153 ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G  231 (1265)
T ss_pred             ccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence                          0111110                     111235889999999988     3333799999987 4


Q ss_pred             ceeeEe-eCCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743          114 RPSSCI-TYEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       114 k~v~~i-~h~~~ItsLafSPdG~~LatGs---~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                      ..-..- ...+--.+++|-|.|..+++-.   .|+.|.+|.-+....-...+........|..++|+.++..|+.
T Consensus       232 ~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  232 ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence            432222 3445566899999999998754   4667999987764332233333334455999999998887765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00084  Score=74.61  Aligned_cols=174  Identities=17%  Similarity=0.209  Sum_probs=114.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----------CCCeEEEEECCCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----------DDGTLHLWDTTGR   70 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs-----------~DGtI~IWDl~t~   70 (633)
                      |||.|.||++--..| |.+|--.+-..++.|.  |.. |.-+.|+|+.. +|++=+           ....++|||+.++
T Consensus       218 wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~-Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  218 WSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPG-VQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             ecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCC-ceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcccc
Confidence            899999999987655 8899877767777775  444 56689999987 788743           2357999999988


Q ss_pred             CceeEEecc--CCCCe-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEc----
Q 006743           71 SPKVSWLKQ--HSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS----  142 (633)
Q Consensus        71 ~~~v~~l~~--H~~~V-tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~----  142 (633)
                      ..+ +.+..  ....+ .-+.|+.|++++|.-..| .|.||+..+-.++-... .-..|....|+|.+..||-=..    
T Consensus       293 ~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  293 LLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             chh-cceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence            743 22222  12222 346899999999988875 58999876533222111 3467888999999888774332    


Q ss_pred             -CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          143 -NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       143 -DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                       -..+.+..+.++ +.++..+  -|.-.=..+-|..+|.+|+.-
T Consensus       371 ~parvtL~evPs~-~~iRt~n--lfnVsDckLhWQk~gdyLcvk  411 (698)
T KOG2314|consen  371 IPARVTLMEVPSK-REIRTKN--LFNVSDCKLHWQKSGDYLCVK  411 (698)
T ss_pred             CcceEEEEecCcc-ceeeecc--ceeeeccEEEeccCCcEEEEE
Confidence             134666666554 2223222  122233457788888887654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.63  E-value=0.0012  Score=75.68  Aligned_cols=187  Identities=14%  Similarity=0.101  Sum_probs=129.5

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSp---dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      .||++...|.|.+||...+..+..+. ++.+.+..++|-+   +.+++|++-....+|.+|+..+++..-+ ........
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-~~ys~~iL  158 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-YDYSHEIL  158 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-cccCCcce
Confidence            67788889999999999888888887 4667778888865   3446788888889999999998884322 22233567


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCC-------CceeeEe-eCCC-------------------------CeEEEEE
Q 006743           85 AGISFSS-DDKIIASVGLDKKLYTYDPGS-------RRPSSCI-TYEA-------------------------PFSSLAF  130 (633)
Q Consensus        85 tsLafSP-dg~~LaSgS~DGtVrIWDlrt-------gk~v~~i-~h~~-------------------------~ItsLaf  130 (633)
                      .|+.+.| |.++|..-+..|.|-+.+.-.       ++..++. .|..                         .+..++|
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf  238 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF  238 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence            7899999 888888888888887776521       2222221 1111                         0224577


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +|.-+.++.......+.|+|++-. +++.+..  -..+.+.-+.|-|+.          ....|++...||.+.+|--+
T Consensus       239 ~p~~rn~lfi~~prellv~dle~~-~~l~vvp--ier~~akfv~vlP~~----------~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  239 SPHWRNILFITFPRELLVFDLEYE-CCLAVVP--IERGGAKFVDVLPDP----------RRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             ChhhhceEEEEeccceEEEcchhh-ceeEEEE--eccCCcceeEeccCC----------CcceEEEEecCCeEEEEEee
Confidence            887777777777888999999865 4444444  244566667777753          34456666778888888443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.62  E-value=0.003  Score=67.05  Aligned_cols=177  Identities=11%  Similarity=0.144  Sum_probs=109.4

Q ss_pred             CcEEEEECCCCceeEEEeCCCCCcEEEEEEcc---C---CCeEEEEEeC----------CCeEEEEECCCC-----Ccee
Q 006743           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSR---N---SRHLLVTAGD----------DGTLHLWDTTGR-----SPKV   74 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSp---d---g~~lLaSGs~----------DGtI~IWDl~t~-----~~~v   74 (633)
                      ..|++.|..+.+.+..+.-...+.+.+++...   +   ...+|+.|..          .|.|.+|++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            46889998888887776654555566554332   2   1457777643          289999999874     2222


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEeeC--CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCITY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v~~i~h--~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      ..-....++|++++-- +++ |+++. .+.|++|++...+ ......+  ...+.++...  +++|++|.....|.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            2234557889999876 444 44444 4789999998877 4444333  3355555554  679999998888888755


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +.....+..+.......++++++|-++           + ..++.+..++.+.++...
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d-----------~-~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVD-----------E-DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-S-----------S-SEEEEEETTSEEEEEEE-
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecC-----------C-cEEEEEcCCCeEEEEEEC
Confidence            543333344443344566777777653           2 256666778888887664

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.61  E-value=0.00039  Score=80.87  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=107.7

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECCCCCcee
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKV   74 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~---------DGtI~IWDl~t~~~~v   74 (633)
                      .+++++.+|...|+|.+-|.++.+.+.++.. |.+.|.  +|.-.|+ +|++|+.         |..|+|||++..... 
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siS--DfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral-  259 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSIS--DFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-  259 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeec-ccccee--eeeccCC-eEEEeecccccccccccchhhhhhhhhhhcc-
Confidence            4678899999999999999999999999987 566666  4555676 7888764         456899999876532 


Q ss_pred             EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeC---CCCce--eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDP---GSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDl---rtgk~--v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      .-+.-+.+ -.-+.|.| -...+++++..|.+.+.|.   .+...  .........+..+++++++..++.|..+|.|.+
T Consensus       260 ~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~  338 (1118)
T KOG1275|consen  260 SPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL  338 (1118)
T ss_pred             CCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence            12222322 25567888 6678899999999999994   33211  122245566999999999999999999999999


Q ss_pred             EECC
Q 006743          149 YDIR  152 (633)
Q Consensus       149 WDlr  152 (633)
                      |.-+
T Consensus       339 wa~~  342 (1118)
T KOG1275|consen  339 WADR  342 (1118)
T ss_pred             ecCC
Confidence            9844

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.0022  Score=69.99  Aligned_cols=200  Identities=9%  Similarity=0.067  Sum_probs=131.2

Q ss_pred             cCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCC-ceeEEe
Q 006743            3 NCKDEHLASISL-SGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRS-PKVSWL   77 (633)
Q Consensus         3 SpdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~-~~v~~l   77 (633)
                      +.+|..+++++. |..++++|+++-..+.-++... ...+. +..++...  .+-+....++.|.|+|-.... .....-
T Consensus        62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk  140 (558)
T KOG0882|consen   62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK  140 (558)
T ss_pred             cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence            557778888777 9999999998766554333211 11111 12222211  233444578999999986554 334555


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CceeeE----------eeCCCCeEEEEEecCCCEEEEEE
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------RRPSSC----------ITYEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt------gk~v~~----------i~h~~~ItsLafSPdG~~LatGs  141 (633)
                      .-|..+|.++.+++.+..+++....|.|..|....      .+....          ...+....++.|+|++..+.+-+
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            67999999999999999999999999999998762      111111          12456788999999999999999


Q ss_pred             cCCeEEEEECCCCCCceEEEeec------------------------------CC-CCCeeEEEEccCCCeEEEeccCCC
Q 006743          142 SNGRVVFYDIRGKPQPLTVLRAC------------------------------SS-SEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       142 ~DGsV~IWDlrs~~k~v~~l~~~------------------------------~H-~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                      .|..|++++.++++ .++.+...                              .| ....+.++|+..+++|+.+..  -
T Consensus       221 ~DrkVR~F~~KtGk-lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~--~  297 (558)
T KOG0882|consen  221 PDRKVRGFVFKTGK-LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI--L  297 (558)
T ss_pred             cccEEEEEEeccch-hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc--e
Confidence            99999999998763 11111000                              01 223467888888888876632  3


Q ss_pred             CeEEEEeeCCCeEEcc
Q 006743          191 ETALLGGAVGDSILMP  206 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIW  206 (633)
                      +.-++.-.....++++
T Consensus       298 gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  298 GIKVINLDTNTVVRIL  313 (558)
T ss_pred             eEEEEEeecCeEEEEe
Confidence            4444444444555554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.55  E-value=0.00065  Score=71.01  Aligned_cols=125  Identities=12%  Similarity=0.189  Sum_probs=90.1

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCC-----CCeEEEEEcC-CCCEEEEEeCCCeEE
Q 006743           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHS-----APTAGISFSS-DDKIIASVGLDKKLY  106 (633)
Q Consensus        35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~~H~-----~~VtsLafSP-dg~~LaSgS~DGtVr  106 (633)
                      .|...+..+.|+.+.+ .+ ..++|=.|.+|+++-..  ..+.-++.|.     .-|++..|+| ..++|...+..|.|+
T Consensus       170 aH~yhiNSiS~NsD~e-t~-lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         170 AHPYHINSISFNSDKE-TL-LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             cceeEeeeeeecCchh-ee-eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            4556677788888876 34 44677899999985433  2233344443     4588899999 778888899999999


Q ss_pred             EEeCCCCcee----eEe-------------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743          107 TYDPGSRRPS----SCI-------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (633)
Q Consensus       107 IWDlrtgk~v----~~i-------------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~  162 (633)
                      +-|+|.....    ..+             .....|..+.|+++|++|++-.. -+|+|||.+..+.|++++.
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence            9999843211    111             12345888999999999987655 5799999999888888775

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.52  E-value=0.0053  Score=70.48  Aligned_cols=193  Identities=11%  Similarity=-0.043  Sum_probs=114.1

Q ss_pred             CCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCCCCcEEEEEE-------------------ccCCCeEEEEEeCCCeEE
Q 006743            4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDY-------------------SRNSRHLLVTAGDDGTLH   63 (633)
Q Consensus         4 pdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~~~~VssLaf-------------------Spdg~~lLaSGs~DGtI~   63 (633)
                      .||++|..-.+ +..|...++...++-+.+..+....+..++|                   .++|+.+..+.-..+.+.
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS  218 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT  218 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence            46888887764 5667777776655444333322222333333                   334432222333345566


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe----------------------------------------CCC
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG----------------------------------------LDK  103 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS----------------------------------------~DG  103 (633)
                      +.|.++.+.. ..+.. ......++++++++++++.+                                        .++
T Consensus       219 vID~etmeV~-~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn  296 (635)
T PRK02888        219 AVDAETMEVA-WQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGS  296 (635)
T ss_pred             EEECccceEE-EEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCC
Confidence            7777665522 22221 12335567778787777665                                        234


Q ss_pred             eEEEEeCCC-----CceeeEeeCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCce-------E-EEeecCCCCC
Q 006743          104 KLYTYDPGS-----RRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPL-------T-VLRACSSSEA  169 (633)
Q Consensus       104 tVrIWDlrt-----gk~v~~i~h~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~k~v-------~-~l~~~~H~~~  169 (633)
                      .|.++|.++     .+.+..+........+.++|||+++++++. +.+|.|+|+.+.+..+       . +.....-...
T Consensus       297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG  376 (635)
T PRK02888        297 KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG  376 (635)
T ss_pred             EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence            688888887     456677778888899999999999887665 8999999998854211       0 0111111223


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       170 VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      -...+|+++            +..+.+--.|..|..|++..
T Consensus       377 PLHTaFDg~------------G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        377 PLHTAFDGR------------GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEECCC------------CCEEEeEeecceeEEEehHH
Confidence            334556554            34455556688999998754

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0025  Score=68.70  Aligned_cols=135  Identities=12%  Similarity=0.070  Sum_probs=90.9

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+|..+ ++..++.+.+|+|.|+++...+..+..+  ..+..++|.-++.++|++|...|.|.|||++..+..+..+.+
T Consensus       200 afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  200 AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA  277 (463)
T ss_pred             ccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence            5788777 7888999999999999998888877753  556778999999999999999999999999876643322222


Q ss_pred             --CCCCeEEEEEc------CCCCEEEEEeCCCeEEEEeCC----CCceeeEeeCCCCeEEEEEecCCCEEEE
Q 006743           80 --HSAPTAGISFS------SDDKIIASVGLDKKLYTYDPG----SRRPSSCITYEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        80 --H~~~VtsLafS------Pdg~~LaSgS~DGtVrIWDlr----tgk~v~~i~h~~~ItsLafSPdG~~Lat  139 (633)
                        ...+|..++.-      +.+.+++....+  +..|.+.    ...++..+...+.+.++++++-.+.++.
T Consensus       278 ~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~  347 (463)
T KOG1645|consen  278 NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL  347 (463)
T ss_pred             hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence              22344444332      234444444433  4556553    2233344456677878888775444443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.031  Score=61.28  Aligned_cols=178  Identities=11%  Similarity=0.050  Sum_probs=120.8

Q ss_pred             ccCCCCEEEE-EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEec
Q 006743            2 YNCKDEHLAS-ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         2 FSpdG~~LaS-gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs--~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      .++.+..++. ...++.|.+.|..+.+....+....  ....+++.+++..+.++-.  .++++.+.|..+...... ..
T Consensus        81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~  157 (381)
T COG3391          81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP  157 (381)
T ss_pred             eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee
Confidence            4566764444 4456899999988777777665433  4456899999985555555  378899999888775333 44


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceee-----EeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743           79 QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-----CITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v~-----~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW  149 (633)
                      ....+ ..+++.|++..++.+. .++.|.+.|........     ..........+.++|+|.++.+....   +.|...
T Consensus       158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i  236 (381)
T COG3391         158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI  236 (381)
T ss_pred             cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence            44344 8999999999766665 78899999987765553     23344556778999999977665544   589999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      |..+... .......+-. ....+.++|+|.++...
T Consensus       237 d~~~~~v-~~~~~~~~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         237 DTATGNV-TATDLPVGSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             eCCCceE-EEeccccccC-CCCceeECCCCCEEEEE
Confidence            9888631 1110111112 45678889988877665

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.48  E-value=0.00095  Score=76.07  Aligned_cols=136  Identities=18%  Similarity=0.226  Sum_probs=93.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-----
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-----   75 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~-----   75 (633)
                      +...+++++.|+.-|.|++|+-..++.. .++. .....+..+..+++.. ++|+|+..|.|.|+-+....+...     
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeecc
Confidence            4567899999999999999996555433 3332 1233444456677665 889999999999998865443211     


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-----PSSCITYEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-----~v~~i~h~~~ItsLafSPdG~~LatGs  141 (633)
                      .-+.|...|+|++|++++..+++|...|+|.+-.+....     ...++...+.|..+.+.  ..+|++++
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVSt  187 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVST  187 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhh
Confidence            123478899999999999999999999999988877621     11222455667666654  33444443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.44  E-value=0.011  Score=61.31  Aligned_cols=181  Identities=12%  Similarity=0.143  Sum_probs=102.0

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--e---
Q 006743            1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--V---   74 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--v---   74 (633)
                      +|+|+.+ ++++....+.|..++. +|+.+..+.-....-.-.|++..++. ++++--.++.+.++++......  .   
T Consensus        28 Ty~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~  105 (248)
T PF06977_consen   28 TYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDDTTSLDRADV  105 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE----TT--EEEE
T ss_pred             EEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEEeccccccchhhc
Confidence            4888766 5556667788888886 68888877643344567788886664 5555556899999998332211  1   


Q ss_pred             EEe-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeeEe---------eCCCCeEEEEEecC-CCE
Q 006743           75 SWL-----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI---------TYEAPFSSLAFIDD-DWI  136 (633)
Q Consensus        75 ~~l-----~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---gk~v~~i---------~h~~~ItsLafSPd-G~~  136 (633)
                      ..+     ..++..+..++|++.++.|+.+-+..-.++|.++.   .......         ..-..+.+++++|. +++
T Consensus       106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~l  185 (248)
T PF06977_consen  106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHL  185 (248)
T ss_dssp             EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEE
T ss_pred             eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeE
Confidence            111     13556799999999877777777776666666543   2222111         13345889999995 567


Q ss_pred             EEEEEcCCeEEEEECCCCCCceEEEeecC--C-----CCCeeEEEEccCCCeEEEe
Q 006743          137 LTAGTSNGRVVFYDIRGKPQPLTVLRACS--S-----SEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       137 LatGs~DGsV~IWDlrs~~k~v~~l~~~~--H-----~~~VtsLafsPdg~~Las~  185 (633)
                      ++.......|.++|....  ++..+....  |     -...-.|+|+++|...++.
T Consensus       186 liLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  186 LILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             EEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            778888899999995543  344443222  1     1246789999987665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.43  E-value=0.0018  Score=74.92  Aligned_cols=106  Identities=13%  Similarity=0.209  Sum_probs=83.5

Q ss_pred             CccCCCCEEEEEE----CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743            1 MYNCKDEHLASIS----LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs----~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~   76 (633)
                      .|+|..-++++++    ..|.|.||- ++|++-..+.-  .-.+.++||+|..- +|+.|-.-|.+.+|...+.+. ...
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~-htv   96 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTET-HTV   96 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCcee-eee
Confidence            4899999998875    357888885 56665444331  12234589999865 788888899999999987763 455


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG  111 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr  111 (633)
                      ...|..+|..+.|+++|..++++..-|.|.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            67899999999999999999999999999999764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.40  E-value=0.005  Score=72.80  Aligned_cols=135  Identities=16%  Similarity=0.127  Sum_probs=93.4

Q ss_pred             ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCC------CeEEEEEeCCCeEEEEECCCCCceeEEe----ccCCC
Q 006743           13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS------RHLLVTAGDDGTLHLWDTTGRSPKVSWL----KQHSA   82 (633)
Q Consensus        13 s~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg------~~lLaSGs~DGtI~IWDl~t~~~~v~~l----~~H~~   82 (633)
                      .....|+-.|++.|+.+.+...+....|.  .+.|+.      ..--+.|-.+..++.||.+-...++..-    .....
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            34578999999999999999875554444  444431      1135677888999999997543222111    12334


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      ...|++-..+| +||+|+.+|.||+||--..+....+ +.+.+|..|+.+.||++|++.+. ..+.+++.
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            56777766544 7999999999999994332333333 56899999999999999887765 45666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.40  E-value=0.002  Score=72.07  Aligned_cols=158  Identities=13%  Similarity=0.124  Sum_probs=89.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      ++|+|+.+++ +.||...||.....+....-     .. ...+|...+  .+|+-...+.|.|+.--.... ...+.. .
T Consensus        40 ~npngr~v~V-~g~geY~iyt~~~~r~k~~G-----~g-~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~-~k~i~~-~  108 (443)
T PF04053_consen   40 HNPNGRFVLV-CGDGEYEIYTALAWRNKAFG-----SG-LSFVWSSRN--RYAVLESSSTIKIYKNFKNEV-VKSIKL-P  108 (443)
T ss_dssp             E-TTSSEEEE-EETTEEEEEETTTTEEEEEE-----E--SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T-T------S
T ss_pred             ECCCCCEEEE-EcCCEEEEEEccCCcccccC-----ce-eEEEEecCc--cEEEEECCCeEEEEEcCcccc-ceEEcC-C
Confidence            7899999988 56888889885444333221     22 236888855  477777789999974322221 111111 1


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-------
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-------  154 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-------  154 (633)
                      ..+..|-.   |.+|+..+.+ .|.+||..+++.+..+.... |..+.|+++|.+++..+.+ .++|++.+..       
T Consensus       109 ~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~  182 (443)
T PF04053_consen  109 FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPE  182 (443)
T ss_dssp             S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTT
T ss_pred             cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccc
Confidence            12344432   7777776655 89999999999999887654 8999999999999999866 5777665432       


Q ss_pred             ---CCceEEEeecCCCCCeeEEEEccC
Q 006743          155 ---PQPLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       155 ---~k~v~~l~~~~H~~~VtsLafsPd  178 (633)
                         +..+..+.  .-...|.+.+|.-+
T Consensus       183 ~g~e~~f~~~~--E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  183 EGVEDAFELIH--EISERIKSGCWVED  207 (443)
T ss_dssp             TB-GGGEEEEE--EE-S--SEEEEETT
T ss_pred             cCchhceEEEE--EecceeEEEEEEcC
Confidence               11233333  22578999999876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.38  E-value=0.0033  Score=72.36  Aligned_cols=147  Identities=13%  Similarity=0.136  Sum_probs=111.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCC-----------CeEEEEEeCCCeEEEEECCCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-----------RHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg-----------~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      |++.| +||.|+ ...|.+-|..+-+.+..+.. |...|..|.|.|..           .-+|+++...|.|.+||....
T Consensus        23 w~~~G-LiAygs-hslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~   99 (1062)
T KOG1912|consen   23 WSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA   99 (1062)
T ss_pred             cCccc-eEEEec-CceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence            45544 566665 45788999999999998875 66778889998742           236778888999999999877


Q ss_pred             CceeEEeccCCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCceeeEeeCCC-CeEEEEEec-CCCEEEEEEcCC
Q 006743           71 SPKVSWLKQHSAPTAGISFSS---DD-KIIASVGLDKKLYTYDPGSRRPSSCITYEA-PFSSLAFID-DDWILTAGTSNG  144 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSP---dg-~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~-~ItsLafSP-dG~~LatGs~DG  144 (633)
                      .. +.++..|..+|.+++|-+   +. ..|+......+|.+|+..+|+.+....... ...|+.++| |.+.+..-+..|
T Consensus       100 s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g  178 (1062)
T KOG1912|consen  100 SV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG  178 (1062)
T ss_pred             hh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence            63 566788899999999976   33 467777778899999999999887765443 455689998 667777777778


Q ss_pred             eEEEEECC
Q 006743          145 RVVFYDIR  152 (633)
Q Consensus       145 sV~IWDlr  152 (633)
                      .|.+-+.-
T Consensus       179 ~vl~~~~l  186 (1062)
T KOG1912|consen  179 FVLSCKDL  186 (1062)
T ss_pred             eEEEEecc
Confidence            87777654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00046  Score=74.21  Aligned_cols=115  Identities=19%  Similarity=0.215  Sum_probs=87.3

Q ss_pred             EEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCC-CEEEE
Q 006743           62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD-WILTA  139 (633)
Q Consensus        62 I~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG-~~Lat  139 (633)
                      |++.+..+.+. ...+..|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+.....+++++|+-|. ++|.+
T Consensus       175 v~~l~~~~fks-sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKS-SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcch-hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence            44444444432 345677888999999999544 8899999999999999998888877666999999999865 67778


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      |-.+|.|+|||++....++..+.......+|..++.-+
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~  291 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ  291 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence            88999999999998776655555333445666665443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.0012  Score=72.00  Aligned_cols=190  Identities=14%  Similarity=0.074  Sum_probs=123.1

Q ss_pred             CCCEEEEEECCCcEEEEECCCCce---eEEEeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCce-eEEecc
Q 006743            5 KDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPK-VSWLKQ   79 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~---v~~~~~~~~~~VssLafSpdg~~lLaSGs~-DGtI~IWDl~t~~~~-v~~l~~   79 (633)
                      ..+++.+++.||.++.|.-..-..   +..+.. |...+..++.+-++. ++++.+. |+.++++|+++-... ...+..
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~   96 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKLVD   96 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccce-eEeeccCcccceeEEEeeccchhhhccccc
Confidence            356888999999999998532122   222332 556677788888886 7888787 999999999765522 111222


Q ss_pred             CCCCeEEEEEcC-CCC-EEE-EEeCCCeEEEEeCCCCcee-eEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           80 HSAPTAGISFSS-DDK-IIA-SVGLDKKLYTYDPGSRRPS-SCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        80 H~~~VtsLafSP-dg~-~La-SgS~DGtVrIWDlrtgk~v-~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      -.+.+.++ .++ +.. .|+ +.-.++.+.++|-+...+. ..+  -|..+|.++.+++.+..+++....|.|.-|....
T Consensus        97 lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~  175 (558)
T KOG0882|consen   97 LPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG  175 (558)
T ss_pred             CCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence            22222211 222 111 232 3346789999998865433 223  3889999999999999999999999999999873


Q ss_pred             -CCCceE-----------EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          154 -KPQPLT-----------VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       154 -~~k~v~-----------~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                       .+.|-.           .+.........+++.|+|++..+..-            +.|..|++++++
T Consensus       176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl------------~~DrkVR~F~~K  231 (558)
T KOG0882|consen  176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL------------NPDRKVRGFVFK  231 (558)
T ss_pred             cccCccccccccccccchhhcccccccCccceEEccccCccccc------------CcccEEEEEEec
Confidence             111111           11112345678899999987776654            346666666655

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.15  E-value=0.0079  Score=66.98  Aligned_cols=139  Identities=16%  Similarity=0.179  Sum_probs=92.5

Q ss_pred             CccCCCCEEEEEE-CCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASIS-LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs-~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~   75 (633)
                      +|+|||++|+.+. .||  .|+++|+..+. ...+.... ..-..=.|+|+|+.++++.+..|.  |.++|.++...  .
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~  319 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--T  319 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--e
Confidence            5999999887654 455  46777876655 33343212 222245799999988888777776  55666666663  3


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLD-KK--LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~D-Gt--VrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D  143 (633)
                      .+......-..-.|+|||++|+..+.. |.  |.+.|+.++...+.+..........|.+++..+...+..
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence            333333333377899999999888753 33  777788776656666666777778888998887755443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.09  E-value=0.13  Score=57.10  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743          123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       123 ~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                      +++..|+.+|+|++||.-..+|.+.|++..-. +.+..+.. .-......+.|+-+.-.++.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~-~~~~~p~~~~WCG~dav~l~  276 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDT-DSKSPPKQMAWCGNDAVVLS  276 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeec-CcCCCCcEEEEECCCcEEEE
Confidence            57999999999999999999999999886554 23333332 23456788999876544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.06  E-value=0.039  Score=60.30  Aligned_cols=141  Identities=12%  Similarity=0.102  Sum_probs=88.5

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCC------cEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQ------VLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~------~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      ..++.+..+|.|..+|..+|+.+.........      ....+.-.|  .+. .++.++.+|.++.+|..+++.  .+-.
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG~~--~W~~  282 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALDLRSGQI--VWKR  282 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEECCCCCE--EEee
Confidence            35667788999999999998876554321100      000011111  133 566778899999999988873  2222


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h--~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      .. .....+..  .+..|+.++.++.|..+|..+++.+-....  .....+..+  .+.+|++++.||.|+++|..+++
T Consensus       283 ~~-~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        283 EY-GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             cC-CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence            21 11122222  467888889999999999999887543321  111222222  25678899999999999999874

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.04  E-value=0.0045  Score=70.78  Aligned_cols=117  Identities=14%  Similarity=0.196  Sum_probs=88.8

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (633)
Q Consensus        36 ~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~  115 (633)
                      +...|.--++...+. +++.|+.-|.|++|+-.++........+..+.+..+..+++..++|.|+..|.|.++-+..+.+
T Consensus        32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence            333344334555565 8999999999999999877743333333456667778888999999999999999998876433


Q ss_pred             e--eEe-----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743          116 S--SCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus       116 v--~~i-----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      -  ..+     .|+..|+|++|++++..|++|...|+|.+-.+..
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            2  111     2678899999999999999999999999987776

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.01  E-value=0.00018  Score=80.99  Aligned_cols=159  Identities=14%  Similarity=0.182  Sum_probs=110.9

Q ss_pred             CCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCce-eEEeccCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEe
Q 006743           37 EQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSS-DDKIIASVG----LDKKLYTYD  109 (633)
Q Consensus        37 ~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~H~~~VtsLafSP-dg~~LaSgS----~DGtVrIWD  109 (633)
                      ...+.|++++-+.+ -+++.|..+|.|.+-.++..... .....+|....++++|++ |.++||.|-    .|-.+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34567788765543 57888999999999988654432 345678889999999999 788888774    345799999


Q ss_pred             CCCC--ceee--Ee--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeE
Q 006743          110 PGSR--RPSS--CI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVF  182 (633)
Q Consensus       110 lrtg--k~v~--~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP-dg~~L  182 (633)
                      +.++  .+..  .+  .......++||..+.+.|++|...+.|+++|+|........    ..+..+..+..+| .+.|+
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhhhhcccceecCCCCCce
Confidence            9876  2221  11  24456678999988899999999999999999953211111    2344566777777 33333


Q ss_pred             EEeccCCCCeEEEEeeCCCeEEccC-CCCCC
Q 006743          183 IDETTCKAETALLGGAVGDSILMPD-PLPSV  212 (633)
Q Consensus       183 as~s~~sd~~lLlSgs~Dg~IkIWD-lr~~~  212 (633)
                                   +...|+.|.+|| .+...
T Consensus       212 -------------cs~~dg~iAiwD~~rnie  229 (783)
T KOG1008|consen  212 -------------CSNSDGDIAIWDTYRNIE  229 (783)
T ss_pred             -------------eccccCceeeccchhhhc
Confidence                         233499999999 55443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0028  Score=71.67  Aligned_cols=92  Identities=12%  Similarity=0.117  Sum_probs=76.3

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA-GISFSSDDKIIASVGLDKKLYTYDPGSRRPS  116 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt-sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v  116 (633)
                      ..+.-+.|+|.-+ +||.+..+|.|.++.+.-.+  +-.+.-|+..++ +++|.|||+.|++|-.||+|++.|+.++..+
T Consensus        21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qR--lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNWQR--LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceEEEEEcCccc-hhheeccCCcEEEEEeccce--eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            3456689999987 99999999999999988333  444554666777 9999999999999999999999999998877


Q ss_pred             eE--eeCCCCeEEEEEec
Q 006743          117 SC--ITYEAPFSSLAFID  132 (633)
Q Consensus       117 ~~--i~h~~~ItsLafSP  132 (633)
                      ..  +.....|.++-|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            66  45778899998873

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.93  E-value=0.28  Score=50.48  Aligned_cols=143  Identities=20%  Similarity=0.234  Sum_probs=90.9

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-------
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW-------   76 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~-------   76 (633)
                      ..++.|+.|+.+| |++++.........+.  +...|..+...++-+ .|++- .|+.+++|++..-......       
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccccccccc
Confidence            3578999999988 9999984333333332  122377788888766 34443 3599999998644322100       


Q ss_pred             ------eccCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEeCCCC-----ceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743           77 ------LKQHSAPTAGIS--FSSDDKIIASVGLDKKLYTYDPGSR-----RPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        77 ------l~~H~~~VtsLa--fSPdg~~LaSgS~DGtVrIWDlrtg-----k~v~~i~h~~~ItsLafSPdG~~LatGs~D  143 (633)
                            .......+..++  -...+...+++...+.|.+|.....     +..+.+.....+.+++|.  ++.|+.|..+
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence                  112223455444  1124445555555668888877542     455666788999999999  6678888765


Q ss_pred             CeEEEEECCCC
Q 006743          144 GRVVFYDIRGK  154 (633)
Q Consensus       144 GsV~IWDlrs~  154 (633)
                      + ..+.|+.+.
T Consensus       158 ~-f~~idl~~~  167 (275)
T PF00780_consen  158 G-FYLIDLNTG  167 (275)
T ss_pred             c-eEEEecCCC
Confidence            5 888899865

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.93  E-value=0.012  Score=69.67  Aligned_cols=124  Identities=17%  Similarity=0.190  Sum_probs=86.9

Q ss_pred             eCCCeEEEEECCCCCceeEEeccCCCC-eEEEEEc----C-CCCEEEEEeCCCeEEEEeCCCCc--eeeE----eeCCCC
Q 006743           57 GDDGTLHLWDTTGRSPKVSWLKQHSAP-TAGISFS----S-DDKIIASVGLDKKLYTYDPGSRR--PSSC----ITYEAP  124 (633)
Q Consensus        57 s~DGtI~IWDl~t~~~~v~~l~~H~~~-VtsLafS----P-dg~~LaSgS~DGtVrIWDlrtgk--~v~~----i~h~~~  124 (633)
                      .....|+-.|++.++. +..+..|... |..++-.    . .....+.|-.++.|..||+|-..  ++..    +.....
T Consensus       501 ~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            4568899999999884 6667766643 6555432    1 23445677778889999999632  3321    134556


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          125 FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       125 ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ..|++-..+| +||+|+.+|.|++||--. .+....+.  +-..+|.+|+.+.||++|++.
T Consensus       580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp--~lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  580 FSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALP--GLGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             ceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCC--CCCCCeeEEEecCCCcEEEEe
Confidence            7888877666 789999999999999533 23222233  667999999999999998765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.92  E-value=0.035  Score=60.68  Aligned_cols=134  Identities=13%  Similarity=0.087  Sum_probs=87.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC--CCC
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH--SAP   83 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H--~~~   83 (633)
                      +..++.++.+|.+..+|..+|+.+-.....  .. ..+..  .+. .++.++.+|.|+.+|..+++.  .+-...  ...
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~  327 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SV-NDFAV--DGG-RIYLVDQNDRVYALDTRGGVE--LWSQSDLLHRL  327 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCC--Cc-cCcEE--ECC-EEEEEcCCCeEEEEECCCCcE--EEcccccCCCc
Confidence            556777888999999999999877554321  11 11222  233 577788899999999988763  221110  111


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-CCCeE-EEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFS-SLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h-~~~It-sLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      .....+  .+.+|+.++.||.|+++|..+++.+..... ...+. ...+  .+..|++++.||.|+.++.
T Consensus       328 ~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        328 LTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            122222  366788999999999999999988766542 22232 2222  2558899999999998764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.87  E-value=0.027  Score=67.90  Aligned_cols=110  Identities=13%  Similarity=0.189  Sum_probs=73.5

Q ss_pred             EEEccCCCeEEEEE-----eCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCC--
Q 006743           43 LDYSRNSRHLLVTA-----GDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG---LDKKLYTYDPGS--  112 (633)
Q Consensus        43 LafSpdg~~lLaSG-----s~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS---~DGtVrIWDlrt--  112 (633)
                      |.|--||+ ++++.     ...+.|+|||-++.-  -..-....+.-.+++|-|.|.++++..   .|+.|.+|.-+.  
T Consensus       201 IsWRgDg~-~fAVs~~~~~~~~RkirV~drEg~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  201 ISWRGDGE-YFAVSFVESETGTRKIRVYDREGAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             EEEccCCc-EEEEEEEeccCCceeEEEecccchh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            78998998 66662     223799999987321  111222334456899999999998865   345688887432  


Q ss_pred             -CceeeEee-CCCCeEEEEEecCCCEEEE---EEcCCeEEEEECCCCC
Q 006743          113 -RRPSSCIT-YEAPFSSLAFIDDDWILTA---GTSNGRVVFYDIRGKP  155 (633)
Q Consensus       113 -gk~v~~i~-h~~~ItsLafSPdG~~Lat---Gs~DGsV~IWDlrs~~  155 (633)
                       +....-.. ....|..++|+.++..|++   ......|++|-..+..
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence             22222222 2334999999999999997   4455569999998763

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.86  E-value=0.52  Score=51.65  Aligned_cols=150  Identities=16%  Similarity=0.194  Sum_probs=89.0

Q ss_pred             ccCCCCEEEEE-ECCC----cEEEEECCCCceeEEE-eCCCCCcEEEEEEccCCCeEEEEEeCC----------CeEEEE
Q 006743            2 YNCKDEHLASI-SLSG----DLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDD----------GTLHLW   65 (633)
Q Consensus         2 FSpdG~~LaSg-s~DG----~I~IWDl~tgk~v~~~-~~~~~~~VssLafSpdg~~lLaSGs~D----------GtI~IW   65 (633)
                      ++|||++||.+ +..|    .|+++|+++++.+... ..   .....+.|.++++.++++...+          ..|+.|
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            68999988865 3444    4999999999876533 22   1122389999988666665433          247888


Q ss_pred             ECCCCCce-eEEeccCCCC--eEEEEEcCCCCEEEEEeCC----CeEEEEeCCCC-----ceeeEeeCCCCeE-EEEEec
Q 006743           66 DTTGRSPK-VSWLKQHSAP--TAGISFSSDDKIIASVGLD----KKLYTYDPGSR-----RPSSCITYEAPFS-SLAFID  132 (633)
Q Consensus        66 Dl~t~~~~-v~~l~~H~~~--VtsLafSPdg~~LaSgS~D----GtVrIWDlrtg-----k~v~~i~h~~~It-sLafSP  132 (633)
                      ++.+.... ...+......  ...+..++|+++|+.....    ..|++.|+..+     ...........+. .+... 
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-  286 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-  286 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence            88665532 2333333332  5678889999987765432    35888899875     3333444444443 34443 


Q ss_pred             CCCEEEEEEc---CCeEEEEECCCCC
Q 006743          133 DDWILTAGTS---NGRVVFYDIRGKP  155 (633)
Q Consensus       133 dG~~LatGs~---DGsV~IWDlrs~~  155 (633)
                      .+.+++....   ++.|.-.++....
T Consensus       287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  287 GDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             CCEEEEeeCCCCCCcEEEEecccccc
Confidence            4434443332   4677778887764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.15  Score=55.95  Aligned_cols=152  Identities=15%  Similarity=0.113  Sum_probs=110.1

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-
Q 006743            1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW-   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~---DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~-   76 (633)
                      +|+++++.+.++..   ++.+.+.|..+++.+....... .. ..+++.|++...+++-..++.|.+.|.......... 
T Consensus       122 ~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~  199 (381)
T COG3391         122 AVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSV  199 (381)
T ss_pred             EECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccc
Confidence            47888988877655   6889999999888888765433 23 568999999866666668999999997766521000 


Q ss_pred             --eccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEe-eCCC-CeEEEEEecCCCEEEEEEcC-CeEEE
Q 006743           77 --LKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCI-TYEA-PFSSLAFIDDDWILTAGTSN-GRVVF  148 (633)
Q Consensus        77 --l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i-~h~~-~ItsLafSPdG~~LatGs~D-GsV~I  148 (633)
                        ...-...-..+.+++++.++......   +.+...|..++...... .... ....+..+|+|.++.+.... +.|.+
T Consensus       200 ~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         200 GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence              11222345778999999977666554   58999999988776652 2222 56778999999999888554 88999


Q ss_pred             EECCCC
Q 006743          149 YDIRGK  154 (633)
Q Consensus       149 WDlrs~  154 (633)
                      .|..+.
T Consensus       280 id~~~~  285 (381)
T COG3391         280 IDGATD  285 (381)
T ss_pred             EeCCCC
Confidence            998876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.75  E-value=0.0014  Score=75.96  Aligned_cols=147  Identities=14%  Similarity=0.196  Sum_probs=102.2

Q ss_pred             EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEE
Q 006743           30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--KLYT  107 (633)
Q Consensus        30 ~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG--tVrI  107 (633)
                      ..|.. +....+|++|+-..+ .|+.|...|.|++|++.++.. .....+|..+|+.+.-+.+|..+++.+.-.  ...+
T Consensus      1095 ~~frd-~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRD-ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             hhhhc-cccceeeEEeecCCc-eEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchHHH
Confidence            34444 456788999998877 799999999999999988874 456789999999999888988877665433  4678


Q ss_pred             EeCCC-CceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeE
Q 006743          108 YDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       108 WDlrt-gk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~-~H~~~VtsLafsPdg~~L  182 (633)
                      |++.. +.+.+.+   ....++.|+..-..-+.|+....+.|||+.++..+...+... +....-.+..|+|+...+
T Consensus      1172 W~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             hccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            99875 3333333   345667888765555667777789999999985443323211 122223667788854333

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.71  E-value=0.11  Score=53.73  Aligned_cols=104  Identities=11%  Similarity=0.051  Sum_probs=68.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt   85 (633)
                      |++++.|+..|.+++.+.++|.....+.....-.++ ....+++. ++..|+.|+..+..|..+..+. ...+.....-.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~g-lIycgshd~~~yalD~~~~~cV-ykskcgG~~f~  139 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGG-LIYCGSHDGNFYALDPKTYGCV-YKSKCGGGTFV  139 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCc-eEEEecCCCcEEEecccccceE-EecccCCceec
Confidence            678899999999999999999887777643332333 24556776 8999999999999999887753 33333333333


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 006743           86 GISFSSDDKIIASVGLDKKLYTYDPGS  112 (633)
Q Consensus        86 sLafSPdg~~LaSgS~DGtVrIWDlrt  112 (633)
                      +-+..|-...|+.+...|.|.-...+.
T Consensus       140 sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  140 SPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             cceecCCCceEEEEeccceEEEEccCC
Confidence            445566333444445555554444443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.0062  Score=68.93  Aligned_cols=87  Identities=24%  Similarity=0.313  Sum_probs=72.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |+|.-..+|.+..+|.|.++.++ .+++..+..+...+..+++|.|||. +|+.|-.||+|++.|+.++.........-.
T Consensus        28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l~~~~~s~e  105 (665)
T KOG4640|consen   28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRLVSFLFSVE  105 (665)
T ss_pred             EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCceeccccccc
Confidence            88999999999999999999987 7888888765555556999999998 999999999999999998875544444556


Q ss_pred             CCeEEEEEc
Q 006743           82 APTAGISFS   90 (633)
Q Consensus        82 ~~VtsLafS   90 (633)
                      ..|.++-|.
T Consensus       106 ~~is~~~w~  114 (665)
T KOG4640|consen  106 TDISKGIWD  114 (665)
T ss_pred             cchheeecc
Confidence            678888886

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.64  E-value=0.27  Score=52.21  Aligned_cols=162  Identities=11%  Similarity=0.074  Sum_probs=95.7

Q ss_pred             CCEEEEEEC----------CCcEEEEECCCC-----ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            6 DEHLASISL----------SGDLILHNLASG-----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         6 G~~LaSgs~----------DG~I~IWDl~tg-----k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      ..+|++|..          .|.|.++++...     +..........+.|.+|+-.  +. .|+++. .+.|++|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCc
Confidence            357777643          288999999874     22222122235677777655  33 344433 489999999777


Q ss_pred             C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeeEee---CCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           71 S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        71 ~-~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt-gk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                      + ............|.++...  +++|++|+..+.|.++..+. ...+..+.   ....++++++-++++.++++..+|.
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence            6 3333333333466666665  66999999888777664332 22233332   3556888888877679999999999


Q ss_pred             EEEEECCCC------CC-ceEEEeecCCCCCeeEE
Q 006743          146 VVFYDIRGK------PQ-PLTVLRACSSSEAVSSL  173 (633)
Q Consensus       146 V~IWDlrs~------~k-~v~~l~~~~H~~~VtsL  173 (633)
                      |.++.....      .. .+.....+.....|+++
T Consensus       196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~  230 (321)
T PF03178_consen  196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF  230 (321)
T ss_dssp             EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred             EEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence            999877631      11 23333333455667777

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.60  E-value=0.14  Score=46.67  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=70.7

Q ss_pred             eEEEEEcC-CC---CEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           84 TAGISFSS-DD---KIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        84 VtsLafSP-dg---~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      |++|++.. ++   +.|++|+.|..||+|+-.  ..+..+.-...|.+++-... ..++.+-.+|+|-+|+-...     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R-----   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR-----   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcce-----
Confidence            66777665 33   689999999999999854  67777777888999887766 67899999999999986442     


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik  204 (633)
                      .++. .....++++++..-        ..++..-|++|-.+|.|-
T Consensus        74 lWRi-KSK~~~~~~~~~D~--------~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRI-KSKNQVTSMAFYDI--------NGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeee-ccCCCeEEEEEEcC--------CCCCceEEEEEecCCeEE
Confidence            2221 12334666665441        223444566666666653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.14  Score=60.13  Aligned_cols=147  Identities=20%  Similarity=0.310  Sum_probs=97.5

Q ss_pred             CEEEEEECCC-----cEEEEECCCC------cee---EEE--eCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--
Q 006743            7 EHLASISLSG-----DLILHNLASG------AKA---AEL--KDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--   67 (633)
Q Consensus         7 ~~LaSgs~DG-----~I~IWDl~tg------k~v---~~~--~~~-~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl--   67 (633)
                      ++|++.+.|+     .|+||+++.-      .++   ..+  +.+ ...++.+++.+.+-. .+|+|-.||.|..+.-  
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcc
Confidence            4677666554     4899998642      122   111  222 356788889988865 8999999999999964  


Q ss_pred             -CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eEe-eCCCCeEEEEEecCCCEEEEEEcCC
Q 006743           68 -TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFIDDDWILTAGTSNG  144 (633)
Q Consensus        68 -~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~i-~h~~~ItsLafSPdG~~LatGs~DG  144 (633)
                       +..............+|+++++..++..++-+..-..|.+|.+....+. ..+ .++..+.|..+++....+++++. .
T Consensus       157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e  235 (933)
T KOG2114|consen  157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-E  235 (933)
T ss_pred             hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-c
Confidence             2222123333445689999999988877333444456899998844422 323 57788999999876554655554 4


Q ss_pred             eEEEEECCCCC
Q 006743          145 RVVFYDIRGKP  155 (633)
Q Consensus       145 sV~IWDlrs~~  155 (633)
                      .|++||....+
T Consensus       236 ~l~fY~sd~~~  246 (933)
T KOG2114|consen  236 FLYFYDSDGRG  246 (933)
T ss_pred             eEEEEcCCCcc
Confidence            59999998653

>smart00320 WD40 WD40 repeats

Probab=96.54  E-value=0.0068  Score=40.28  Aligned_cols=36  Identities=33%  Similarity=0.539  Sum_probs=32.0

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD  109 (633)
                      ...+..|...|.+++|.+++..+++++.|+.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445667888999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.50  E-value=0.16  Score=46.31  Aligned_cols=98  Identities=20%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCC
Q 006743           44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA  123 (633)
Q Consensus        44 afSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~  123 (633)
                      .|.-+|.+.|++|++|..|+||+-..-   +..+..+ ..|.+++-... ..|+.+-.+|+|-+|+-..  .+..+..+.
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~e~---~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKSK~   81 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGDEI---VAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKSKN   81 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCCcE---EEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeeccCC
Confidence            345566678999999999999987632   3344433 56777776644 7799999999999998632  222334445


Q ss_pred             CeEEEEEec---CC-CEEEEEEcCCeEEE
Q 006743          124 PFSSLAFID---DD-WILTAGTSNGRVVF  148 (633)
Q Consensus       124 ~ItsLafSP---dG-~~LatGs~DGsV~I  148 (633)
                      .+.++++..   || .-|++|-.+|.|-+
T Consensus        82 ~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   82 QVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            577776655   22 36888888888753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.50  E-value=0.36  Score=52.18  Aligned_cols=178  Identities=18%  Similarity=0.200  Sum_probs=95.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC----------------CCcEEEEEEccCCCeEEEEEeCCCeE--
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPN----------------EQVLRVLDYSRNSRHLLVTAGDDGTL--   62 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~----------------~~~VssLafSpdg~~lLaSGs~DGtI--   62 (633)
                      .|+|+|+.+|... ++.|++++..++...+......                -..-..+.|+|+++++++.--++..|  
T Consensus        49 ~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~  127 (353)
T PF00930_consen   49 KWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE  127 (353)
T ss_dssp             EE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E
T ss_pred             eeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCce
Confidence            3899999998775 6799999987775443222210                11224578999999655544444433  


Q ss_pred             ---------------------------------EEEECCCCCce-eEEe---ccCCCCeEEEEEcCCCCEEEEEe--CCC
Q 006743           63 ---------------------------------HLWDTTGRSPK-VSWL---KQHSAPTAGISFSSDDKIIASVG--LDK  103 (633)
Q Consensus        63 ---------------------------------~IWDl~t~~~~-v~~l---~~H~~~VtsLafSPdg~~LaSgS--~DG  103 (633)
                                                       .|+|+.+++.. +...   ..-...+..+.|.++++.|+..-  .+.
T Consensus       128 ~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q  207 (353)
T PF00930_consen  128 YPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ  207 (353)
T ss_dssp             EEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS
T ss_pred             EEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCC
Confidence                                             33444443321 1111   12345678899999888444433  332


Q ss_pred             ---eEEEEeCCCCceeeEe--eCCCCe---EEEEEe-cCC-CEEEEEEcCCeEEEE--ECCCCCCceEEEeecCCCCCee
Q 006743          104 ---KLYTYDPGSRRPSSCI--TYEAPF---SSLAFI-DDD-WILTAGTSNGRVVFY--DIRGKPQPLTVLRACSSSEAVS  171 (633)
Q Consensus       104 ---tVrIWDlrtgk~v~~i--~h~~~I---tsLafS-PdG-~~LatGs~DGsV~IW--Dlrs~~k~v~~l~~~~H~~~Vt  171 (633)
                         .+.++|..++.+....  ...+.|   ....+. +++ .+|.....||.-+||  +...+  ..+.+.  ...-.|.
T Consensus       208 ~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT--~G~~~V~  283 (353)
T PF00930_consen  208 NRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLT--SGDWEVT  283 (353)
T ss_dssp             TEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS---SSS-EE
T ss_pred             CEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccc--cCceeec
Confidence               5778888877654433  233333   255554 554 555566677765554  55544  223333  2334454


Q ss_pred             E-EEEccCCCeEE
Q 006743          172 S-LCWQRAKPVFI  183 (633)
Q Consensus       172 s-LafsPdg~~La  183 (633)
                      . +.|+++++.|.
T Consensus       284 ~i~~~d~~~~~iy  296 (353)
T PF00930_consen  284 SILGWDEDNNRIY  296 (353)
T ss_dssp             EEEEEECTSSEEE
T ss_pred             ccceEcCCCCEEE
Confidence            4 66777765554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.47  E-value=0.13  Score=59.61  Aligned_cols=163  Identities=15%  Similarity=0.175  Sum_probs=90.3

Q ss_pred             CccCCCCEEEEEE------CCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC------------CC
Q 006743            1 MYNCKDEHLASIS------LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD------------DG   60 (633)
Q Consensus         1 AFSpdG~~LaSgs------~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~------------DG   60 (633)
                      +++++|+.++..-      .|+  .|.+++. .+.. ..+...  .....-.|+|+|+ .|++..+            .+
T Consensus       356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g--~~~t~PsWspDG~-~lw~v~dg~~~~~v~~~~~~g  430 (591)
T PRK13616        356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG--HSLTRPSWSLDAD-AVWVVVDGNTVVRVIRDPATG  430 (591)
T ss_pred             eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC--CCCCCceECCCCC-ceEEEecCcceEEEeccCCCc
Confidence            4689999887654      233  5666664 3333 333221  2256678999977 4444432            23


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EeCCCCceeeE-----e--eCCCCeEEEEE
Q 006743           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT---YDPGSRRPSSC-----I--TYEAPFSSLAF  130 (633)
Q Consensus        61 tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI---WDlrtgk~v~~-----i--~h~~~ItsLaf  130 (633)
                      .+++.++..+..  ..  .....|..++|+|||..|+... ++.|++   -....+. ...     +  .....+..+.|
T Consensus       431 ql~~~~vd~ge~--~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        431 QLARTPVDASAV--AS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             eEEEEeccCchh--hh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceE
Confidence            444445544442  11  3356799999999999988877 467776   4434443 222     2  13344688999


Q ss_pred             ecCCCEEEEEEcCCeEEEE--ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          131 IDDDWILTAGTSNGRVVFY--DIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       131 SPdG~~LatGs~DGsV~IW--Dlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      ..++.++ ++..++...+|  ++.....  ..+........+..|+=.+
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~--~~~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVNLDGSNS--DALPSRNLSAPVVAVAASP  550 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEecCCccc--cccCCCCccCceEEEecCC
Confidence            9998854 55554444444  4443321  1112112245566666544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.44  E-value=0.01  Score=68.90  Aligned_cols=108  Identities=13%  Similarity=0.219  Sum_probs=82.6

Q ss_pred             EEEEEccCCCeEEEEEe----CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006743           41 RVLDYSRNSRHLLVTAG----DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS  116 (633)
Q Consensus        41 ssLafSpdg~~lLaSGs----~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v  116 (633)
                      +...|+|... +|+.++    ..|.|.||--. +++....  ...-.++++||+|..-.|+.|=.-|.+.+|...+.+..
T Consensus        19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadt-GEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   19 TISSWHPSEP-LFAVASFSPERGGSVTIFADT-GEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccCCCCc-eeEEEEecCCCCceEEEEecC-CCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            4467999888 677665    46888888543 3322111  11223567999999889999999999999998876544


Q ss_pred             eEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743          117 SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus       117 ~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ... .|..+|..+.|+++|..++++..-|.|.+|...
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            333 699999999999999999999999999999876

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.31  E-value=0.3  Score=50.67  Aligned_cols=143  Identities=16%  Similarity=0.216  Sum_probs=85.6

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--  114 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk--  114 (633)
                      ..++.|.|+|+.+.++++....+.|..++..+.-  ++.+. ...+...+|++..++.++++--.++.+.++++....  
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v--lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV--LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E--EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE--EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3489999999988788888899999999986432  33332 223568899998777777766678999999884321  


Q ss_pred             --e--eeEe--e----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--CCCceEEEee------cCCCCCeeEEEEc
Q 006743          115 --P--SSCI--T----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG--KPQPLTVLRA------CSSSEAVSSLCWQ  176 (633)
Q Consensus       115 --~--v~~i--~----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs--~~k~v~~l~~------~~H~~~VtsLafs  176 (633)
                        .  ...+  .    ....+-.++|++.++.|+++.+..-..||.++.  ....+.....      ......+.+++++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence              1  1112  1    445689999999988888887776666776654  2111221111      1234457889999


Q ss_pred             cCCCeE
Q 006743          177 RAKPVF  182 (633)
Q Consensus       177 Pdg~~L  182 (633)
                      |....+
T Consensus       180 p~t~~l  185 (248)
T PF06977_consen  180 PRTGHL  185 (248)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence            864333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.27  E-value=0.18  Score=51.85  Aligned_cols=122  Identities=19%  Similarity=0.255  Sum_probs=75.0

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--------------
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--------------  117 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~--------------  117 (633)
                      .|+.|.++| |++|++..........  +...|..+...++-+.+++-+ |+.|+++|+..-....              
T Consensus         9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~   84 (275)
T PF00780_consen    9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP   84 (275)
T ss_pred             EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence            688889999 9999994333222222  233499999999777777766 4999999987543332              


Q ss_pred             -EeeCCCCeEEEE--EecCCCEEEEEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEcc
Q 006743          118 -CITYEAPFSSLA--FIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       118 -~i~h~~~ItsLa--fSPdG~~LatGs~DGsV~IWDlrs~~k~v-~~l~~~~H~~~VtsLafsP  177 (633)
                       .+.....+...+  -...+...++.....+|.+|......... ..++.+.-...+.+++|..
T Consensus        85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~  148 (275)
T PF00780_consen   85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG  148 (275)
T ss_pred             ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC
Confidence             122233444444  11234344444445589988887642222 3333344568899999984

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.26  E-value=0.76  Score=49.17  Aligned_cols=154  Identities=18%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             cEEEEECCCCceeEEEe----CCCCCcEEEEEEccCCCeEEEEEe-----C-----CCeEEEEECCCCCceeEEeccCCC
Q 006743           17 DLILHNLASGAKAAELK----DPNEQVLRVLDYSRNSRHLLVTAG-----D-----DGTLHLWDTTGRSPKVSWLKQHSA   82 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~----~~~~~~VssLafSpdg~~lLaSGs-----~-----DGtI~IWDl~t~~~~v~~l~~H~~   82 (633)
                      -+.+++.+++..+..+.    +......+.+...|+|+.++-+.+     .     -|.|+.+|.. +. .++.+..+-.
T Consensus        86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~-~~~l~~~~~~  163 (307)
T COG3386          86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GG-VVRLLDDDLT  163 (307)
T ss_pred             ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CC-EEEeecCcEE
Confidence            35666665555433322    112234556788899883222222     1     1334444432 22 2455556566


Q ss_pred             CeEEEEEcCCCCEEEEEeCC-CeEEEEeCCC--C----ceeeE-e-eCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECC
Q 006743           83 PTAGISFSSDDKIIASVGLD-KKLYTYDPGS--R----RPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIR  152 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~D-GtVrIWDlrt--g----k~v~~-i-~h~~~ItsLafSPdG~~LatGs~DG-sV~IWDlr  152 (633)
                      .-+.|+|+||++.|+.+... +.|+.|++..  +    +.... + ...+..-.++...+|.+.+++..+| .|.+|+..
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            77899999999888777654 7888887752  1    11111 1 2356677888888998887666665 89999998


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEc
Q 006743          153 GKPQPLTVLRACSSSEAVSSLCWQ  176 (633)
Q Consensus       153 s~~k~v~~l~~~~H~~~VtsLafs  176 (633)
                       + +.+..+..  ....+++++|-
T Consensus       244 -G-~l~~~i~l--P~~~~t~~~Fg  263 (307)
T COG3386         244 -G-KLLGEIKL--PVKRPTNPAFG  263 (307)
T ss_pred             -C-cEEEEEEC--CCCCCccceEe
Confidence             4 34555553  33778888885

>smart00320 WD40 WD40 repeats

Probab=96.14  E-value=0.016  Score=38.39  Aligned_cols=31  Identities=26%  Similarity=0.504  Sum_probs=28.6

Q ss_pred             eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743          120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus       120 ~h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      .+...|.+++|.+++.++++++.|+.|++||
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.11  E-value=0.35  Score=56.21  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=78.8

Q ss_pred             CcEEEEEEccCCCeEEEEEe-----CCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC--------
Q 006743           38 QVLRVLDYSRNSRHLLVTAG-----DDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD--------  102 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs-----~DG--tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D--------  102 (633)
                      ..+...+++|+|+.+.++..     .|.  .|.+++..+..  .....+  ....+-.|+|+|..|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            35667899999985555542     243  45555653322  222333  237889999998888877543        


Q ss_pred             ----CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE---EECCCCCCceE---EEeecCCCCCeeE
Q 006743          103 ----KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF---YDIRGKPQPLT---VLRACSSSEAVSS  172 (633)
Q Consensus       103 ----GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I---WDlrs~~k~v~---~l~~~~H~~~Vts  172 (633)
                          +.+.+.+++.+....  ...+.|..+.|+|||..|+... +|.|++   -....+...+.   .+. ..-...+..
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~  501 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVS  501 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee-cccCCcccc
Confidence                233333443333322  3356799999999999988766 477777   33333321110   011 123344678


Q ss_pred             EEEccCCCe
Q 006743          173 LCWQRAKPV  181 (633)
Q Consensus       173 LafsPdg~~  181 (633)
                      +.|..++..
T Consensus       502 l~W~~~~~L  510 (591)
T PRK13616        502 LDWRTGDSL  510 (591)
T ss_pred             ceEecCCEE
Confidence            888886553

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.05  E-value=0.17  Score=56.82  Aligned_cols=130  Identities=16%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             CeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEeCCCCce--eeEe-
Q 006743           50 RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-------IIASVGLDKKLYTYDPGSRRP--SSCI-  119 (633)
Q Consensus        50 ~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~-------~LaSgS~DGtVrIWDlrtgk~--v~~i-  119 (633)
                      +-+|..+.....|+-.|++.++. +..+.-|.. |+-+.+.|+.+       .=+.|-.|+.|.-||+|-...  +... 
T Consensus       346 nlil~~~~~~~~l~klDIE~GKI-VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKI-VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ceEeeCCCCcCcceeeeccccee-eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            33455666667788889988884 666666655 77778877543       123456678899999984322  1111 


Q ss_pred             ----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          120 ----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       120 ----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                          .......|.+-..+| +|++|+.+|.|++||-- +.+....+  ++-..+|+.|..+.+|++|++.
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTAl--PgLG~~I~hVdvtadGKwil~T  489 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTAL--PGLGDAIKHVDVTADGKWILAT  489 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhcc--cccCCceeeEEeeccCcEEEEe
Confidence                234456666655554 78999999999999973 32222223  3677999999999999998765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.064  Score=64.48  Aligned_cols=146  Identities=10%  Similarity=0.026  Sum_probs=94.2

Q ss_pred             cEEEEEEccCCCeEEEE-EeCCCeEEEEECCCCCcee----------EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEE
Q 006743           39 VLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTGRSPKV----------SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLY  106 (633)
Q Consensus        39 ~VssLafSpdg~~lLaS-Gs~DGtI~IWDl~t~~~~v----------~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVr  106 (633)
                      .+..+..++|+....+. .+.+-.|+.||++.-....          .........+.++.|+| -....+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            34445556665422222 2334478999996433111          12223334567889999 344567778899888


Q ss_pred             EEeCCCCc-eeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEE
Q 006743          107 TYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       107 IWDlrtgk-~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~--~H~~~VtsLafsPdg~~La  183 (633)
                      +.-+.... .+..+......+|++|+|.|+.+++|-..|++.-|...-..+  ..+...  .....|.||+|-....+++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee--ecccCCCcCCCcceeEEEEecceeEEE
Confidence            88775432 233345677899999999999999999999999997654311  112211  1246799999998888877


Q ss_pred             Eec
Q 006743          184 DET  186 (633)
Q Consensus       184 s~s  186 (633)
                      ..+
T Consensus       260 vy~  262 (1405)
T KOG3630|consen  260 VYG  262 (1405)
T ss_pred             Eec
Confidence            653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.91  E-value=0.16  Score=56.98  Aligned_cols=136  Identities=10%  Similarity=0.127  Sum_probs=78.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------CceeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----------SPKVS   75 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~----------~~~v~   75 (633)
                      |..|+..+.+ .|.+||+++++.++.+..   ..|..|.|+++++ +++..+ +..++|++....          +....
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~-~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~  190 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGE-LVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFE  190 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSS-EEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCC-EEEEEe-CCeEEEEEecchhcccccccCchhceE
Confidence            6666666544 899999999999999974   2378899999998 555555 456777766433          11133


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      .+......|.+.+|..+  .|+..... .|++  +-.|..........++.=+.+.+..+.|.....|+.|..+.+.
T Consensus       191 ~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  191 LIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            34443578999999855  66666655 6777  4445544333446677777888877788888888888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.90  E-value=2.7  Score=43.97  Aligned_cols=168  Identities=15%  Similarity=0.185  Sum_probs=99.5

Q ss_pred             CCCCEEEEEECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            4 CKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         4 pdG~~LaSgs~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      .+|.++-+.+.-|  .|+.+|+.+++......-....--..++..  ++.++.-.-.++...+||..+-+. +..+ ...
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~-~~~~-~y~  129 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK-IGTF-PYP  129 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE-EEEE-E-S
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE-EEEE-ecC
Confidence            4566666666666  699999999998766554332222233333  234666667899999999988764 3333 233


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---C---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h---~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      +.=+.++  .+++.|+.......|+++|..+.+....+.   .   -..++-+.|. +|.+.|=.=....|...|..++ 
T Consensus       130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG-  205 (264)
T PF05096_consen  130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG-  205 (264)
T ss_dssp             SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--
T ss_pred             CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-
Confidence            4556776  357777777778899999999877766553   1   2245566665 5555554545666777788877 


Q ss_pred             CceEEEeec-------------CCCCCeeEEEEccCC
Q 006743          156 QPLTVLRAC-------------SSSEAVSSLCWQRAK  179 (633)
Q Consensus       156 k~v~~l~~~-------------~H~~~VtsLafsPdg  179 (633)
                      +....+...             ........|+|+|..
T Consensus       206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~  242 (264)
T PF05096_consen  206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET  242 (264)
T ss_dssp             BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred             eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence            333333211             113568899998863

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.89  E-value=0.53  Score=53.35  Aligned_cols=144  Identities=13%  Similarity=0.096  Sum_probs=88.3

Q ss_pred             CCCEEEEEECCC------------------cEEEEECCCCceeEEEeCCCCC-----cEEEEEEc----cCC--CeEEEE
Q 006743            5 KDEHLASISLSG------------------DLILHNLASGAKAAELKDPNEQ-----VLRVLDYS----RNS--RHLLVT   55 (633)
Q Consensus         5 dG~~LaSgs~DG------------------~I~IWDl~tgk~v~~~~~~~~~-----~VssLafS----pdg--~~lLaS   55 (633)
                      .+..++.++.++                  .|.-+|.++|+.+-.++.....     ......+.    -++  ..+++.
T Consensus       227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~  306 (488)
T cd00216         227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVH  306 (488)
T ss_pred             CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEE
Confidence            456777776665                  7999999999988776532111     00000111    122  135788


Q ss_pred             EeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE------------------eCCCeEEEEeCCCCceee
Q 006743           56 AGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV------------------GLDKKLYTYDPGSRRPSS  117 (633)
Q Consensus        56 Gs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSg------------------S~DGtVrIWDlrtgk~v~  117 (633)
                      ++.+|.++..|.++++..  +-....  ...++..|  ..++.+                  ..+|.|..+|+.+++.+-
T Consensus       307 g~~~G~l~ald~~tG~~~--W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W  380 (488)
T cd00216         307 APKNGFFYVLDRTTGKLI--SARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW  380 (488)
T ss_pred             ECCCceEEEEECCCCcEe--eEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence            889999999999998843  211110  11233333  333332                  246789999999998776


Q ss_pred             EeeCC---------CCeE--EEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743          118 CITYE---------APFS--SLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus       118 ~i~h~---------~~It--sLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      .....         .+..  .+.  -.+..|++++.||.|+.+|.++++.
T Consensus       381 ~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         381 EKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             EeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCce
Confidence            65432         1111  122  2467889999999999999999853

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.84  E-value=0.49  Score=51.91  Aligned_cols=182  Identities=12%  Similarity=0.085  Sum_probs=95.4

Q ss_pred             CccCCCCEEEEEEC-C--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISL-S--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~-D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|..||++|+.++. |  ..+++.|+++++..+-..+...... ...++++++ .++-...+..|+--|+.+.+. ....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~-~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDR-ALYYVKNGRSLRRVDLDTLEE-RVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSS-EEEEEETTTEEEEEETTT--E-EEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCC-eEEEEECCCeEEEEECCcCcE-EEEE
Confidence            58899987776654 4  4688889988877665543222222 245678877 444455567888899988773 2333


Q ss_pred             ccCCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecC
Q 006743           78 KQHSAPTAGISFS--SDDKIIASVGL----------------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD  133 (633)
Q Consensus        78 ~~H~~~VtsLafS--Pdg~~LaSgS~----------------------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPd  133 (633)
                      ......+-...|.  .++..++-.-.                      .+.|...|+++|+...++.....+..+.|+|.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            3444555445564  35665543211                      13577779999988888888889999999995


Q ss_pred             -CCEEEEEEc---CCe-EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          134 -DWILTAGTS---NGR-VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       134 -G~~LatGs~---DGs-V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                       ...|+-|.+   +.. -+||-++....-.+.+........+..=-|.|+|..|...
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~  255 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD  255 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence             455555554   221 3566555433323333322334456666789998887654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.82  E-value=1.2  Score=46.68  Aligned_cols=175  Identities=14%  Similarity=0.114  Sum_probs=102.6

Q ss_pred             eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 006743           28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL  105 (633)
Q Consensus        28 ~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtV  105 (633)
                      .+.++......-...+.|..++. ++-+.+.-|  .|+.+|+.+++..........---..++.. +++.+.-.=.++..
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~  112 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence            44555533345567788877775 777777766  689999998874322222222223344444 23344444467899


Q ss_pred             EEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeE
Q 006743          106 YTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVF  182 (633)
Q Consensus       106 rIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafsPdg~~L  182 (633)
                      .+||..+-+.+..+...+.-..++  .|++.|+.......|+++|..+.+ ..+.+.......   .+..+.|. +| +|
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNELE~i-~G-~I  187 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNELEYI-NG-KI  187 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEEEEE-TT-EE
T ss_pred             EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeEEEE-cC-EE
Confidence            999999999988888777777777  467888888888899999998763 333333222222   34556765 34 34


Q ss_pred             EEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          183 IDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       183 as~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .+.-+..+..+.+.-.....+.++|+.
T Consensus       188 yANVW~td~I~~Idp~tG~V~~~iDls  214 (264)
T PF05096_consen  188 YANVWQTDRIVRIDPETGKVVGWIDLS  214 (264)
T ss_dssp             EEEETTSSEEEEEETTT-BEEEEEE-H
T ss_pred             EEEeCCCCeEEEEeCCCCeEEEEEEhh
Confidence            444466666666666656666666764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.80  E-value=1.5  Score=48.21  Aligned_cols=195  Identities=14%  Similarity=0.105  Sum_probs=111.6

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEE----ccCCCe--EEEEEeCC---CeEEEEECCCCCcee
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY----SRNSRH--LLVTAGDD---GTLHLWDTTGRSPKV   74 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLaf----Spdg~~--lLaSGs~D---GtI~IWDl~t~~~~v   74 (633)
                      |...+|+...+++-+.+||+ +|+.+..+...   .++.|..    .-.++.  ++++...+   ..|++|.+......+
T Consensus        66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L  141 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL  141 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred             cccceEEEEeCCCCEEEEcC-CCcEEEeecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence            33457777788899999998 67777777532   2232222    113332  23344433   479999886432223


Q ss_pred             EEecc-------CCCCeEEEEE--cC-CCC-EEEEEeCCCeEEEEeCC---CC----ceeeEeeCCCCeEEEEEecCCCE
Q 006743           75 SWLKQ-------HSAPTAGISF--SS-DDK-IIASVGLDKKLYTYDPG---SR----RPSSCITYEAPFSSLAFIDDDWI  136 (633)
Q Consensus        75 ~~l~~-------H~~~VtsLaf--SP-dg~-~LaSgS~DGtVrIWDlr---tg----k~v~~i~h~~~ItsLafSPdG~~  136 (633)
                      ..+..       ....++.+|+  ++ ++. +++....+|.+..|-+.   .+    +.++.+.....+..|..+....+
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR  221 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence            33321       1234778887  34 454 56677788987777653   33    35677777789999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCC--CceEEEee--cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          137 LTAGTSNGRVVFYDIRGKP--QPLTVLRA--CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       137 LatGs~DGsV~IWDlrs~~--k~v~~l~~--~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      |..+-++.-|.-|+.+-..  ....+...  .....-|..|+.-..        ....+.++++.-.++...|||...
T Consensus       222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~--------~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG--------SDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE---------CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec--------CCCCeEEEEEcCCCCeEEEEecCC
Confidence            9999999888888887322  22111111  123345666665431        122445666666688999998763

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PHA02713 hypothetical protein; Provisional

Probab=95.78  E-value=0.34  Score=55.88  Aligned_cols=142  Identities=14%  Similarity=0.128  Sum_probs=71.1

Q ss_pred             CCCEEEEEECC------CcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCc
Q 006743            5 KDEHLASISLS------GDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSP   72 (633)
Q Consensus         5 dG~~LaSgs~D------G~I~IWDl~tgk~v~~~~~~-~~~~VssLafSpdg~~lLaSGs~DG-----tI~IWDl~t~~~   72 (633)
                      +++.++.||.+      ..+..||..++... .+..- ....-.+++ .-++. +++.|+.++     .+..||..+...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~-~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA-VIDDT-IYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE-EECCE-EEEECCcCCCCCCceEEEEECCCCeE
Confidence            45555666643      24778887665432 11110 111011122 22344 778888764     488899876652


Q ss_pred             eeEEeccCCCCe--EEEEEcCCCCEEEEEeCCC-----------------------eEEEEeCCCCceeeEee--CCCCe
Q 006743           73 KVSWLKQHSAPT--AGISFSSDDKIIASVGLDK-----------------------KLYTYDPGSRRPSSCIT--YEAPF  125 (633)
Q Consensus        73 ~v~~l~~H~~~V--tsLafSPdg~~LaSgS~DG-----------------------tVrIWDlrtgk~v~~i~--h~~~I  125 (633)
                      .  .+.....+.  .+++. -++++.+.|+.++                       .|..||.++.+-...-.  ....-
T Consensus       380 ~--~~~~mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~  456 (557)
T PHA02713        380 K--MLPDMPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR  456 (557)
T ss_pred             E--ECCCCCcccccccEEE-ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence            2  111111111  11111 2577778887652                       47789988765432221  11111


Q ss_pred             EEEEEecCCCEEEEEEcCC------eEEEEECCC
Q 006743          126 SSLAFIDDDWILTAGTSNG------RVVFYDIRG  153 (633)
Q Consensus       126 tsLafSPdG~~LatGs~DG------sV~IWDlrs  153 (633)
                      .+++ .-+|++.++|+.++      .|..||..+
T Consensus       457 ~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        457 PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             CcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence            1122 22467777777542      467899887

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.73  E-value=1.4  Score=45.52  Aligned_cols=143  Identities=11%  Similarity=0.096  Sum_probs=85.0

Q ss_pred             cEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCce
Q 006743           39 VLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-PGSRRP  115 (633)
Q Consensus        39 ~VssLafSpdg~~lLaSGs--~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD-lrtgk~  115 (633)
                      .+...+++++++.+.+...  ....++++......  ...+.  ...+....|++++...+....+...+++. ..++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            5677899999985555552  33445555544332  22222  23788889999988777777666666663 333332


Q ss_pred             eeE-e--e-CCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCC-C-ceEE---Eee-cCCCCCeeEEEEccCCCeE
Q 006743          116 SSC-I--T-YEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKP-Q-PLTV---LRA-CSSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       116 v~~-i--~-h~~~ItsLafSPdG~~LatGs---~DGsV~IWDlrs~~-k-~v~~---l~~-~~H~~~VtsLafsPdg~~L  182 (633)
                      ... .  . ....|..+.++|||..++...   .++.|++--+.... . +...   +.. ......++.+.|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            221 1  1 222899999999999888665   35777776543211 1 1111   111 1235678999999875554


Q ss_pred             EEe
Q 006743          183 IDE  185 (633)
Q Consensus       183 as~  185 (633)
                      +..
T Consensus       181 V~~  183 (253)
T PF10647_consen  181 VLG  183 (253)
T ss_pred             EEe
Confidence            443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.69  E-value=1.1  Score=49.19  Aligned_cols=113  Identities=20%  Similarity=0.251  Sum_probs=73.9

Q ss_pred             EEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------e
Q 006743           40 LRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-----------K  104 (633)
Q Consensus        40 VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG-----------t  104 (633)
                      +..+.++|+++.++++.+..|    .|+++|+.+++.....+...  .-..+.|.++++.|+....+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            335788999996666656655    49999999887433332221  122399999988877765333           4


Q ss_pred             EEEEeCCCCcee--eEee--CCCC-eEEEEEecCCCEEEEEEcC----CeEEEEECCCC
Q 006743          105 LYTYDPGSRRPS--SCIT--YEAP-FSSLAFIDDDWILTAGTSN----GRVVFYDIRGK  154 (633)
Q Consensus       105 VrIWDlrtgk~v--~~i~--h~~~-ItsLafSPdG~~LatGs~D----GsV~IWDlrs~  154 (633)
                      |++|.+.+....  .++.  .... ...+..++|+++|+.....    ..|++.|+...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            889999876543  3332  2333 6788999999998865432    34888888774

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.62  E-value=0.49  Score=49.20  Aligned_cols=109  Identities=11%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             EccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC
Q 006743           45 YSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP  124 (633)
Q Consensus        45 fSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~  124 (633)
                      ..++...+++.|+..+.+.--|..+++  +.+-..-...|.+-+.- -|+.++.|+..|.+++.+.++|.....+...+.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~--~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGN--LIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCc--EEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            345556689999999999999998887  34433344455544433 477899999999999999999977666644344


Q ss_pred             eE-EEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743          125 FS-SLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus       125 It-sLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      |. .....+++..|.+|+.|+..+..|.++...
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccce
Confidence            33 344567899999999999999999998753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.62  E-value=1.3  Score=50.29  Aligned_cols=148  Identities=16%  Similarity=0.120  Sum_probs=90.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCC-----Cc-E-EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNE-----QV-L-RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~-----~~-V-ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +..++.++.++.|+.+|..+|+.+-.+.....     .. + ..+... ++. .++.++.++.|+-+|.++++..  +-.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~TG~~~--W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAETGKQV--WKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC-eEEEecCCCeEEEEECCCCCEe--eee
Confidence            45677788899999999999988876653221     00 0 011111 213 5778889999999999988733  211


Q ss_pred             cCCCCe---EEEEEcC--CCCEEEEEe---------CCCeEEEEeCCCCceeeEeeCC-C--------------------
Q 006743           79 QHSAPT---AGISFSS--DDKIIASVG---------LDKKLYTYDPGSRRPSSCITYE-A--------------------  123 (633)
Q Consensus        79 ~H~~~V---tsLafSP--dg~~LaSgS---------~DGtVrIWDlrtgk~v~~i~h~-~--------------------  123 (633)
                      .-...+   ..+.-.|  .+.+++.++         .++.|..+|..+++.+-..... .                    
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            111110   1122222  234555554         3678999999999887655321 0                    


Q ss_pred             Ce-EEEEEecCCCEEEEEEcCC------------------eEEEEECCCCCCc
Q 006743          124 PF-SSLAFIDDDWILTAGTSNG------------------RVVFYDIRGKPQP  157 (633)
Q Consensus       124 ~I-tsLafSPdG~~LatGs~DG------------------sV~IWDlrs~~k~  157 (633)
                      .+ ...++++.+..|++++.++                  .|+-+|+++++..
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            01 1244555567788887665                  7899999988543

The alignment model contains an 8-bladed beta-propeller.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.28  E-value=0.59  Score=54.18  Aligned_cols=145  Identities=14%  Similarity=0.102  Sum_probs=83.3

Q ss_pred             CCCEEEEEECC-C-----cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe-----EEEEECCCCCce
Q 006743            5 KDEHLASISLS-G-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-----LHLWDTTGRSPK   73 (633)
Q Consensus         5 dG~~LaSgs~D-G-----~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt-----I~IWDl~t~~~~   73 (633)
                      +|...++||.| |     .+..||..+++-.. +..-...... +....-+..+.+.|+.||.     |..||..+.+..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCCccc
Confidence            45677888888 3     57788887766332 1110111111 1111112348889999874     888888776632


Q ss_pred             eEEeccCCCCeEEEEEcC-CCCEEEEEeCCC------eEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCC
Q 006743           74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK------KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNG  144 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSP-dg~~LaSgS~DG------tVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DG  144 (633)
                        ..-.......+..... ++++.++|+.++      .|..||..+++-...-.  .......++. -++.+.++|+.|+
T Consensus       410 --~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  410 --PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDG  486 (571)
T ss_pred             --ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccC
Confidence              2222222333333333 688888888665      57899998876544332  1111111222 2577888888776


Q ss_pred             e-----EEEEECCCC
Q 006743          145 R-----VVFYDIRGK  154 (633)
Q Consensus       145 s-----V~IWDlrs~  154 (633)
                      .     |..||..+.
T Consensus       487 ~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  487 TSALSSVERYDPETN  501 (571)
T ss_pred             CCccceEEEEcCCCC
Confidence            3     788998876

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.22  E-value=1.9  Score=46.68  Aligned_cols=192  Identities=12%  Similarity=0.108  Sum_probs=109.9

Q ss_pred             ccCCCCEEEEEE--CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeE---
Q 006743            2 YNCKDEHLASIS--LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVS---   75 (633)
Q Consensus         2 FSpdG~~LaSgs--~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t-~~~~v~---   75 (633)
                      ++.||+++++..  -.-.|.|-|+..++.+.++..  .++.   -..|.++.-|.+-|.||.+.-..+.. ++....   
T Consensus       102 ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~---~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  102 LSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCW---LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             E-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEE---EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             EccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEE---EEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence            567777776643  345688888888888887763  2222   22344433588889999999998863 332211   


Q ss_pred             EeccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--e-----------CCCCeEEEEEecCCCEEEEEE
Q 006743           76 WLKQHSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--T-----------YEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        76 ~l~~H~~~V-tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~-----------h~~~ItsLafSPdG~~LatGs  141 (633)
                      .+..-..++ ..-++...+..++-.+.+|.|+-.|+.........  .           ..+...-+++++..+.|++--
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence            111112222 23344455556666899999999998765432211  1           123445577887655544332


Q ss_pred             c---CC-------eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe-eCCCeEEccCCCC
Q 006743          142 S---NG-------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG-AVGDSILMPDPLP  210 (633)
Q Consensus       142 ~---DG-------sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg-s~Dg~IkIWDlr~  210 (633)
                      .   +|       .|.+||+.+.+ .+..+.   -..++.+|..+.+           +..+|++. ..++.+.+||...
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~---l~~~~~Si~Vsqd-----------~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHK-RVARIP---LEHPIDSIAVSQD-----------DKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTE-EEEEEE---EEEEESEEEEESS-----------SS-EEEEEETTTTEEEEEETTT
T ss_pred             cCCCCCCccCCceEEEEEECCCCe-EEEEEe---CCCccceEEEccC-----------CCcEEEEEcCCCCeEEEEeCcC
Confidence            1   22       37788888873 333333   2345778888764           55555554 3478999999876


Q ss_pred             CCC
Q 006743          211 SVT  213 (633)
Q Consensus       211 ~~~  213 (633)
                      -..
T Consensus       322 Gk~  324 (342)
T PF06433_consen  322 GKL  324 (342)
T ss_dssp             --E
T ss_pred             CcE
Confidence            544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.18  E-value=0.65  Score=53.85  Aligned_cols=145  Identities=14%  Similarity=0.145  Sum_probs=83.6

Q ss_pred             CCEEEEEECCC------cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 006743            6 DEHLASISLSG------DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK   73 (633)
Q Consensus         6 G~~LaSgs~DG------~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D------GtI~IWDl~t~~~~   73 (633)
                      +..++.||.++      .|..||..++.......-.....-.+++...+  .++++|+.|      ..+..||....+..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCcee
Confidence            45677787773      58889987775433222222222233444433  488999998      35888898776632


Q ss_pred             eEEeccCCCCeEEEEEcC-CCCEEEEEeCCC-----eEEEEeCCCCceeeEeeCCCCeEEEEE-ecCCCEEEEEEcCC--
Q 006743           74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK-----KLYTYDPGSRRPSSCITYEAPFSSLAF-IDDDWILTAGTSNG--  144 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSP-dg~~LaSgS~DG-----tVrIWDlrtgk~v~~i~h~~~ItsLaf-SPdG~~LatGs~DG--  144 (633)
                        .+..-...-..+.... +|.+.++|+.||     +|-.||.++.+-...-........... .-+|.+.++|+.++  
T Consensus       363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence              1111111111222222 688999999997     588899887654333222212222211 22577888888654  


Q ss_pred             ----eEEEEECCCC
Q 006743          145 ----RVVFYDIRGK  154 (633)
Q Consensus       145 ----sV~IWDlrs~  154 (633)
                          .|..||..+.
T Consensus       441 ~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  441 NCLNSVECYDPETN  454 (571)
T ss_pred             cccceEEEEcCCCC
Confidence                4788998876

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.13  E-value=0.035  Score=56.36  Aligned_cols=102  Identities=8%  Similarity=0.058  Sum_probs=63.3

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEE-EcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CC-CCeEEE
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGIS-FSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YE-APFSSL  128 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLa-fSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~-~~ItsL  128 (633)
                      .+++|+.+|.|++|..................|-++- --.++.+.++++.|+.|+.|++.-.+.+-... |. .++...
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence            5889999999999988632211111222223333332 22366789999999999999998877766654 44 344444


Q ss_pred             EEecCCCEEEEE--EcCCeEEEEECCC
Q 006743          129 AFIDDDWILTAG--TSNGRVVFYDIRG  153 (633)
Q Consensus       129 afSPdG~~LatG--s~DGsV~IWDlrs  153 (633)
                      .....++.|+..  +.|..++.|++..
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhh
Confidence            444445555555  5566666666654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.08  E-value=1.2  Score=49.27  Aligned_cols=189  Identities=15%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEe-------CCCCCcEEEEEEcc-----CC--CeEEEEEeCCCeEEEEECCC--
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELK-------DPNEQVLRVLDYSR-----NS--RHLLVTAGDDGTLHLWDTTG--   69 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~-------~~~~~~VssLafSp-----dg--~~lLaSGs~DGtI~IWDl~t--   69 (633)
                      =.++|.|..+|.+.|.|++....+..-.       ......++++.|.-     |+  .-++++|...|.+.+|.+.-  
T Consensus        97 iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~  176 (395)
T PF08596_consen   97 IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSS  176 (395)
T ss_dssp             TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-G
T ss_pred             CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCC
Confidence            3478999999999999997766655421       12345677788862     11  13688899999999998841  


Q ss_pred             -CCce---eEEeccCCCCeEEEE-EcCC--------------------CCEEEEEeCCCeEEEEeCCCCceeeEee-CCC
Q 006743           70 -RSPK---VSWLKQHSAPTAGIS-FSSD--------------------DKIIASVGLDKKLYTYDPGSRRPSSCIT-YEA  123 (633)
Q Consensus        70 -~~~~---v~~l~~H~~~VtsLa-fSPd--------------------g~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~  123 (633)
                       +...   ......+.+.|..|. ++.+                    -.-++....+..+|++..-+.+.....- ...
T Consensus       177 ~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~  256 (395)
T PF08596_consen  177 NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPF  256 (395)
T ss_dssp             GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-E
T ss_pred             CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecccc
Confidence             1111   112234566666665 3211                    1124444456779999998877654433 222


Q ss_pred             CeEEEEEe-----cCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743          124 PFSSLAFI-----DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLG  196 (633)
Q Consensus       124 ~ItsLafS-----PdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~--~H~~~VtsLafsPdg~~Las~s~~sd~~lLlS  196 (633)
                      .+..+++-     ..+..|++-..+|.|++|.+..-+ .+..+...  .+...+...++.++|..++..+  ..+..+++
T Consensus       257 ~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk-ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g--psE~~l~s  333 (395)
T PF08596_consen  257 LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK-EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG--PSEIQLFS  333 (395)
T ss_dssp             EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S--SSEEEEEE
T ss_pred             ccceEEEEeecccCCceEEEEEECCCcEEEEECCCch-HhhcccCCCccccccccccEECCCCCEEEEeC--cccEEEEE
Confidence            33444553     356788899999999999998863 33333321  1223455677788888776552  23444444


Q ss_pred             e
Q 006743          197 G  197 (633)
Q Consensus       197 g  197 (633)
                      .
T Consensus       334 v  334 (395)
T PF08596_consen  334 V  334 (395)
T ss_dssp             E
T ss_pred             E
Confidence            3

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=0.21  Score=56.18  Aligned_cols=138  Identities=12%  Similarity=0.141  Sum_probs=92.5

Q ss_pred             EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCe------EEEEEeCCCeEEEEECCCCCc-eeEEeccCC-
Q 006743           10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRH------LLVTAGDDGTLHLWDTTGRSP-KVSWLKQHS-   81 (633)
Q Consensus        10 aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~------lLaSGs~DGtI~IWDl~t~~~-~v~~l~~H~-   81 (633)
                      ..+.....|+-.|++.|+.+.+.+-+..  |..+.+.|+...      --+.|-.|..|+-||.+-... ++.+...|. 
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            3455566788899999999988875333  566777776420      123566788899999864432 233333332 


Q ss_pred             ---CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           82 ---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        82 ---~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                         ..-.|++-. ...+|++|+.+|.||+||- .++.. ..+ +.+.+|..+..+.+|++|++.+. .++.+.|+.
T Consensus       428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL  500 (644)
T ss_pred             ccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence               223444443 4458999999999999997 44332 223 57889999999999999876654 556666654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.95  E-value=0.083  Score=63.30  Aligned_cols=94  Identities=18%  Similarity=0.216  Sum_probs=73.0

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCC---eEE
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAP---FSS  127 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~---Its  127 (633)
                      .++.|+..|.|...|..+.-...+.-....++|++++|+.+|..++.|-.+|-|.+||+..++..+.+. +..+   +..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            688899999999999877543333334456899999999999999999999999999999988887773 4444   444


Q ss_pred             EEEecCCCEEEEEEcCCe
Q 006743          128 LAFIDDDWILTAGTSNGR  145 (633)
Q Consensus       128 LafSPdG~~LatGs~DGs  145 (633)
                      +.+..++..++++...|.
T Consensus       181 v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  181 VGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEeCCCcEEEEccCCCc
Confidence            455556777888877776

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.81  E-value=0.078  Score=53.87  Aligned_cols=103  Identities=14%  Similarity=0.199  Sum_probs=56.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeEEeccCC-C
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-A   82 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~-~   82 (633)
                      +..++.|+.+|.|++|++.--.............|.++  -|.++  .+.++++.||.|+.|.+.-.+. +-....|+ .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceec--cccccccceeEEeccCCceeeeccccCce-eeeeccccCC
Confidence            35678899999999999862221111111122333322  23333  2899999999999999976662 33344454 3


Q ss_pred             CeEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 006743           83 PTAGISFSSDDKIIASV--GLDKKLYTYDPG  111 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSg--S~DGtVrIWDlr  111 (633)
                      .+..+..+..++.++..  +.|..++.|++.
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchh
Confidence            33333333334444444  444444455443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.69  E-value=5.7  Score=45.69  Aligned_cols=197  Identities=10%  Similarity=-0.027  Sum_probs=107.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEE----------EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR----------VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vs----------sLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      +..|++++.++.|+-+|..+|+.+-++.......+.          .+++.  +. .++.++.|+.|.-.|..+++..-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEee
Confidence            457778888899999999999988776532111111          11222  23 467788899999999998884311


Q ss_pred             Eec-cCCCCeEEEEEcC--CCCEEEEEe------CCCeEEEEeCCCCceeeEeeC--CC---------------------
Q 006743           76 WLK-QHSAPTAGISFSS--DDKIIASVG------LDKKLYTYDPGSRRPSSCITY--EA---------------------  123 (633)
Q Consensus        76 ~l~-~H~~~VtsLafSP--dg~~LaSgS------~DGtVrIWDlrtgk~v~~i~h--~~---------------------  123 (633)
                      .-. .+.. -..+.-.|  .+..++++.      .+|.|..+|.++|+.+-.+..  ..                     
T Consensus       146 ~~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       146 KKNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             cccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            111 1110 01111122  233455543      268999999999987755421  00                     


Q ss_pred             ---------Ce-EEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          124 ---------PF-SSLAFIDDDWILTAGTSN-----G-----------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       124 ---------~I-tsLafSPdG~~LatGs~D-----G-----------sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                               .+ ..+.++|....|..+..+     +           .|.-.|+++++. .-.++...|...    .|+.
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~-~W~~Q~~~~D~w----D~d~  299 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI-KWHYQTTPHDEW----DYDG  299 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE-EEeeeCCCCCCc----cccC
Confidence                     01 134666666666666532     2           466677777742 222333233322    1211


Q ss_pred             -CCCeEEEeccCCCC--eEEEEeeCCCeEEccCCCCCC
Q 006743          178 -AKPVFIDETTCKAE--TALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       178 -dg~~Las~s~~sd~--~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                       ....|+.. ..++.  .+++.+..+|.+.+.|-+.-.
T Consensus       300 ~~~p~l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       300 VNEMILFDL-KKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             CCCcEEEEe-ccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence             22333322 11222  466677778888887775443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=1.7  Score=52.95  Aligned_cols=135  Identities=12%  Similarity=0.021  Sum_probs=87.2

Q ss_pred             cCCCCEEEEE--ECCCcEEEEECCCCceeE-----EEeC-----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            3 NCKDEHLASI--SLSGDLILHNLASGAKAA-----ELKD-----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         3 SpdG~~LaSg--s~DG~I~IWDl~tgk~v~-----~~~~-----~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      .+|+...++.  .++-.|+.||+++-..-.     -++.     .......++.|+|.-....+.+..|+.|+|..+...
T Consensus       109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~  188 (1405)
T KOG3630|consen  109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL  188 (1405)
T ss_pred             ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence            4555544433  333478889986532111     0111     112334568899876555778888999999887654


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-----CCCCeEEEEEecCCCEEEE
Q 006743           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-----h~~~ItsLafSPdG~~Lat  139 (633)
                      ...+.. ......++|++|+|.|+.++.|-..|++.-|-..- +....+.     ....|.||+|--...++++
T Consensus       189 ~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  189 AQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            433333 23456789999999999999999999999887642 2222221     2478999999876666654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.47  E-value=0.8  Score=50.71  Aligned_cols=76  Identities=21%  Similarity=0.180  Sum_probs=54.3

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEec-----CC---CEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFID-----DD---WILT  138 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSP-----dG---~~La  138 (633)
                      .+....++|++++.+ |=-+++.|..+|.+.|.|+|....+....         ....++++.|.-     |+   -.++
T Consensus        81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            344557899999998 66689999999999999999877765532         234688888874     33   4688


Q ss_pred             EEEcCCeEEEEECC
Q 006743          139 AGTSNGRVVFYDIR  152 (633)
Q Consensus       139 tGs~DGsV~IWDlr  152 (633)
                      +|+..|.+.+|.+.
T Consensus       160 vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  160 VGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEe
Confidence            99999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.43  E-value=1.2  Score=46.94  Aligned_cols=184  Identities=14%  Similarity=0.161  Sum_probs=106.1

Q ss_pred             EEEEECCCCceeEEEeCCCCC-cEEEEEEccCCCeEEEEEeC-----CCeEEEEECCCCCceeEEeccCCCCeEEEEEcC
Q 006743           18 LILHNLASGAKAAELKDPNEQ-VLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS   91 (633)
Q Consensus        18 I~IWDl~tgk~v~~~~~~~~~-~VssLafSpdg~~lLaSGs~-----DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP   91 (633)
                      ..++|..+.+....+...... -.-.=+|+++|+ +|++.-.     -|.|-|||.+..-..+-.+..|.-.-..+.|.+
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~  171 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA  171 (366)
T ss_pred             EEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence            456777666554444321111 111125899998 5555433     367999999876655667778888888999999


Q ss_pred             CCCEEEEEeC------------------CCeEEEEeCCCCceeeEee-----CCCCeEEEEEecCCCEEEEEEcCCeE--
Q 006743           92 DDKIIASVGL------------------DKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRV--  146 (633)
Q Consensus        92 dg~~LaSgS~------------------DGtVrIWDlrtgk~v~~i~-----h~~~ItsLafSPdG~~LatGs~DGsV--  146 (633)
                      ||+.++.+..                  .-.+.+.|..++..+....     +.-.|..++..+||.+++.+-..|--  
T Consensus       172 DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d  251 (366)
T COG3490         172 DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRND  251 (366)
T ss_pred             CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCcc
Confidence            9999988753                  1135556656666554332     34568888888888777665543310  


Q ss_pred             --EEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          147 --VFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       147 --~IWDlrs~~k~v~~l~~~-----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                        -+.-...+.++++.+...     .-...|-+|+.+.           .++.+.++.-..+...+||...-..
T Consensus       252 ~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-----------~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         252 LPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-----------RDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             CCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-----------cCCeEEEecCCCCeEEEEEcCCCcE
Confidence              000111111222222211     1123344555443           3566666666778888998855443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.39  E-value=4.9  Score=44.29  Aligned_cols=175  Identities=11%  Similarity=0.155  Sum_probs=87.7

Q ss_pred             cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC---CCe-EEEEECCCCCceeEEeccCCC--CeEEEEEc
Q 006743           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGT-LHLWDTTGRSPKVSWLKQHSA--PTAGISFS   90 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~---DGt-I~IWDl~t~~~~v~~l~~H~~--~VtsLafS   90 (633)
                      .|...|+.+|+....+.  ....+..+.|+|....+|+-|-+   +.. -+||-+.........+..|..  .+..=-|.
T Consensus       169 ~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~  246 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV  246 (386)
T ss_dssp             EEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred             eEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence            35566777776655554  34566778999988866666543   332 477776443323444444432  22333578


Q ss_pred             CCCCEEEEEeC-----CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC----------------eEEEE
Q 006743           91 SDDKIIASVGL-----DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG----------------RVVFY  149 (633)
Q Consensus        91 Pdg~~LaSgS~-----DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG----------------sV~IW  149 (633)
                      |||..|...+.     +..|.-+|+.+++....... .+....-.++||+.++-=+.|.                .|+++
T Consensus       247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~  325 (386)
T PF14583_consen  247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF  325 (386)
T ss_dssp             TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred             CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence            89988776543     45788889998766543332 2455666778998877544432                56778


Q ss_pred             ECCCCCCceEEEeec-------CCCC--CeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743          150 DIRGKPQPLTVLRAC-------SSSE--AVSSLCWQRAKPVFIDETTCKAETALLG  196 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~-------~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlS  196 (633)
                      ++.....  ..+..+       .+..  .=..+.|+||+++++..++..+...++.
T Consensus       326 ~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  326 DVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             ETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             ccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence            8876421  222211       1111  1246889999988877765555544443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=8.6  Score=40.98  Aligned_cols=162  Identities=9%  Similarity=0.043  Sum_probs=103.0

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (633)
Q Consensus        37 ~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~  115 (633)
                      ...+..+.++.+   +...+.++.-++|.|+.+...+...-. .-.+..+++..+  |++..++..|.-+.++|+.+...
T Consensus        86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCC
Confidence            345556677644   677778888899999987764432211 222455666665  89999999777788899887543


Q ss_pred             eeEe---e-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006743          116 SSCI---T-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE  191 (633)
Q Consensus       116 v~~i---~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~  191 (633)
                      -...   . .......++.+  |++-..+..|+-+.|-|+.+...|+.+-. ..-...+.++..+++.-+++..   +.+
T Consensus       161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~-~n~g~g~~sv~vsdnr~y~vvy---~eg  234 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS-YNTGPGTYSVSVSDNRAYLVVY---DEG  234 (370)
T ss_pred             ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE-EecCCceEEEEecCCeeEEEEc---ccc
Confidence            3332   2 22334566666  77888888999999999998766644332 2333478888888876666654   234


Q ss_pred             eEEEEeeCCCeEEccCCC
Q 006743          192 TALLGGAVGDSILMPDPL  209 (633)
Q Consensus       192 ~lLlSgs~Dg~IkIWDlr  209 (633)
                      .+++-.+......+++.+
T Consensus       235 vlivd~s~~ssp~~~gsy  252 (370)
T COG5276         235 VLIVDVSGPSSPTVFGSY  252 (370)
T ss_pred             eEEEecCCCCCceEeecc
Confidence            444444444444444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.29  E-value=2.7  Score=45.51  Aligned_cols=157  Identities=20%  Similarity=0.272  Sum_probs=94.4

Q ss_pred             CEEEEEECCCcEEEEECC-CCceeEEE---eCCCCC-cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-EEeccC
Q 006743            7 EHLASISLSGDLILHNLA-SGAKAAEL---KDPNEQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLKQH   80 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~-tgk~v~~~---~~~~~~-~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v-~~l~~H   80 (633)
                      +.+.+.|.||.+.-..+. .|+.....   .....+ .+..-++...+. .++--+.+|.|+--|+....... ..+.--
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCccccc
Confidence            457788899999988887 55544221   111222 222234444444 34446888999999987766221 111100


Q ss_pred             ----------CCCeEEEEEcCCCCEEEEEeC---CC-------eEEEEeCCCCceeeEeeCCCCeEEEEEecCCC-EEEE
Q 006743           81 ----------SAPTAGISFSSDDKIIASVGL---DK-------KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW-ILTA  139 (633)
Q Consensus        81 ----------~~~VtsLafSPdg~~LaSgS~---DG-------tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~-~Lat  139 (633)
                                .+.-.-+++++..++|++--.   ++       .|.+||+.+++.+..+..+..+.+|..+.+.+ .|++
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence                      122344778775555554321   22       69999999999999998777898999999876 4434


Q ss_pred             E-EcCCeEEEEECCCCCCceEEEeecC
Q 006743          140 G-TSNGRVVFYDIRGKPQPLTVLRACS  165 (633)
Q Consensus       140 G-s~DGsV~IWDlrs~~k~v~~l~~~~  165 (633)
                      . ..++.|.+||..++ +.++.+...+
T Consensus       307 ~~~~~~~l~v~D~~tG-k~~~~~~~lG  332 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATG-KLVRSIEQLG  332 (342)
T ss_dssp             EETTTTEEEEEETTT---EEEEE---S
T ss_pred             EcCCCCeEEEEeCcCC-cEEeehhccC
Confidence            3 45799999999998 4555555433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.28  E-value=6.5  Score=42.11  Aligned_cols=143  Identities=16%  Similarity=0.135  Sum_probs=82.6

Q ss_pred             ccCCCCEEEEE-ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--
Q 006743            2 YNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--   78 (633)
Q Consensus         2 FSpdG~~LaSg-s~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--   78 (633)
                      |.++...|+-+ -..+.|.-|+..+++... +..  ...+.++.....+. .|+++.  .-+++++.+.... +..+.  
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~--p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~-~t~~~~~  104 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS--PGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGK-ITLLAEP  104 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC--CCCcccceeecCCC-eEEEEc--cccEEEeccCCce-eEEeccc
Confidence            66677755444 356788888887664332 221  12223333333333 354443  3356666654442 11111  


Q ss_pred             --c-CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcC
Q 006743           79 --Q-HSAPTAGISFSSDDKIIASVGL-----------DKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        79 --~-H~~~VtsLafSPdg~~LaSgS~-----------DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~D  143 (633)
                        + -...-+.+...|+|.+.+....           -|.|+.+|. .+..+..+. +-..-+.|+|+||++.|......
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence              1 1245577888899887665444           135666666 455555443 35667789999999888877654


Q ss_pred             -CeEEEEECC
Q 006743          144 -GRVVFYDIR  152 (633)
Q Consensus       144 -GsV~IWDlr  152 (633)
                       +.|+-|++.
T Consensus       184 ~~~i~r~~~d  193 (307)
T COG3386         184 ANRIHRYDLD  193 (307)
T ss_pred             CCeEEEEecC
Confidence             788888776

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.19  E-value=1.5  Score=46.32  Aligned_cols=115  Identities=12%  Similarity=0.171  Sum_probs=73.9

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS  116 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v  116 (633)
                      ..++++.|+|+.+. |++..+...-.||=...+.. +..+. ..-.....|.|..++++.++--.++.+.++.+.....+
T Consensus        86 ~nvS~LTynp~~rt-LFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          86 ANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccceeeCCCcce-EEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            34899999999985 55555545544554333442 23221 11233456778777777777777888888776544221


Q ss_pred             e-----E--e---eC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743          117 S-----C--I---TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       117 ~-----~--i---~h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      .     .  +   .+ ......++|+|..+.|+.+-+..-+.||.....
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~  212 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS  212 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence            1     1  1   12 567889999999999988888777777776644

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.11  E-value=0.16  Score=60.99  Aligned_cols=81  Identities=20%  Similarity=0.236  Sum_probs=60.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCce--eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 006743           92 DDKIIASVGLDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA  169 (633)
Q Consensus        92 dg~~LaSgS~DGtVrIWDlrtgk~--v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~  169 (633)
                      .+-.++.|+..|.|-..|....-.  ..-....++|++++|+.+|..++.|-.+|.|.+||+..+ ++++.+..  |..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e--~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITE--HGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeee--cCCc
Confidence            456788888888898888876422  122235789999999999999999999999999999987 56677763  4444


Q ss_pred             eeEEEE
Q 006743          170 VSSLCW  175 (633)
Q Consensus       170 VtsLaf  175 (633)
                      ++++-+
T Consensus       175 ~t~vi~  180 (1206)
T KOG2079|consen  175 VTGVIF  180 (1206)
T ss_pred             cceEEE
Confidence            444443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.01  E-value=1.2  Score=48.24  Aligned_cols=140  Identities=19%  Similarity=0.247  Sum_probs=80.4

Q ss_pred             ccCCCCEEEEE--ECCC---cEEEEECCCCceeEEEeCCCC---CcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            2 YNCKDEHLASI--SLSG---DLILHNLASGAKAAELKDPNE---QVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         2 FSpdG~~LaSg--s~DG---~I~IWDl~tgk~v~~~~~~~~---~~VssLafS-pdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      |.++++.|+..  ..+.   .+.++|..+++....+.....   .....+.|. +++..+|.....||.-+||-+.....
T Consensus       191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~  270 (353)
T PF00930_consen  191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG  270 (353)
T ss_dssp             EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred             ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence            66777744433  2222   366778777654333322111   122234554 77777888888999876666543333


Q ss_pred             eeEEeccCCCCeEE-EEEcCCCCEE-EEEeCCC----eEEEEeCC-CCceeeEeeCCCCe-EEEEEecCCCEEEEEEc
Q 006743           73 KVSWLKQHSAPTAG-ISFSSDDKII-ASVGLDK----KLYTYDPG-SRRPSSCITYEAPF-SSLAFIDDDWILTAGTS  142 (633)
Q Consensus        73 ~v~~l~~H~~~Vts-LafSPdg~~L-aSgS~DG----tVrIWDlr-tgk~v~~i~h~~~I-tsLafSPdG~~LatGs~  142 (633)
                      ....+....-.|.. +.|+++++.| +++..++    .|+..++. .+.. ..+...... ..+.|+|++++++..+.
T Consensus       271 ~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  271 KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEEc
Confidence            35567777777855 6778866554 4555433    67777888 4444 444333333 59999999998875543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.00  E-value=3.7  Score=49.55  Aligned_cols=164  Identities=7%  Similarity=0.080  Sum_probs=103.5

Q ss_pred             cEEEEECCCCceeEEEeCCCCCc---EEEEEEccCCCeEEEEEe----------CCCeEEEEECCCCCceeEEecc--CC
Q 006743           17 DLILHNLASGAKAAELKDPNEQV---LRVLDYSRNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQ--HS   81 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~---VssLafSpdg~~lLaSGs----------~DGtI~IWDl~t~~~~v~~l~~--H~   81 (633)
                      .++++|.++-+.+...+-...+.   +..+.|..|.+.+++.|.          ..|.|.||...... .++.+..  -.
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-~L~~v~e~~v~  829 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-SLELVAETVVK  829 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-ceeeeeeeeec
Confidence            36677776665554433222222   223457777555677664          34778888876622 1222222  23


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      +.|.++..- +|+++|.-  ...|++|+..+++.++.- .+..++..+...-.|..|++|.--+.|.+...+..+..+..
T Consensus       830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e  906 (1096)
T KOG1897|consen  830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE  906 (1096)
T ss_pred             cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence            455555432 57766544  457999999888655444 67888999999999999999999898888766655433444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEE
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                      +....+..+.+++.+-.+..++.+
T Consensus       907 vArD~~p~Wmtaveil~~d~ylga  930 (1096)
T KOG1897|consen  907 VARDYNPNWMTAVEILDDDTYLGA  930 (1096)
T ss_pred             eehhhCccceeeEEEecCceEEee
Confidence            544567788888887655444443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.99  E-value=12  Score=45.05  Aligned_cols=111  Identities=11%  Similarity=0.038  Sum_probs=70.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCC-------cEEEEEEcc----------------CCCeEEEEEeCCCeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQ-------VLRVLDYSR----------------NSRHLLVTAGDDGTL   62 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~-------~VssLafSp----------------dg~~lLaSGs~DGtI   62 (633)
                      +..|+.++.++.|+-.|..+|+.+-++......       .++.+.+..                ++. .++.++.|+.|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence            567888888999999999999988776532211       122233321                222 57788889999


Q ss_pred             EEEECCCCCceeEEeccCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEeCCCCceee
Q 006743           63 HLWDTTGRSPKVSWLKQHSAPT-------------AGISFSS--DDKIIASVGL----------DKKLYTYDPGSRRPSS  117 (633)
Q Consensus        63 ~IWDl~t~~~~v~~l~~H~~~V-------------tsLafSP--dg~~LaSgS~----------DGtVrIWDlrtgk~v~  117 (633)
                      .-.|.++++..  .-.+.++.|             ..+.-.|  .+..+++|+.          +|.|+-+|.++|+.+-
T Consensus       273 iALDA~TGk~~--W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       273 IALDADTGKLC--EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEEECCCCCEE--EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            99999888742  211222221             1112223  3456666643          6889999999999876


Q ss_pred             Ee
Q 006743          118 CI  119 (633)
Q Consensus       118 ~i  119 (633)
                      .+
T Consensus       351 ~~  352 (764)
T TIGR03074       351 AW  352 (764)
T ss_pred             EE
Confidence            55

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.94  E-value=3.6  Score=45.93  Aligned_cols=194  Identities=10%  Similarity=0.054  Sum_probs=89.4

Q ss_pred             CCCEEEEEE-CCCcEEEEECCCC----ceeEEEeC---CC---CCcEEEEEEccCCCeEEEEEe--C----CCeEEEEEC
Q 006743            5 KDEHLASIS-LSGDLILHNLASG----AKAAELKD---PN---EQVLRVLDYSRNSRHLLVTAG--D----DGTLHLWDT   67 (633)
Q Consensus         5 dG~~LaSgs-~DG~I~IWDl~tg----k~v~~~~~---~~---~~~VssLafSpdg~~lLaSGs--~----DGtI~IWDl   67 (633)
                      +.++|++.+ ..+.|+|+|+.+.    +..+.+..   ..   -..-..+...|+|+ +++++-  .    -|-+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence            456777776 6789999999742    23333331   00   01122344567887 666642  2    245888888


Q ss_pred             CCCCceeEEecc--CCCCeEEEEEcCCCCEEEEEeC--------------------CCeEEEEeCCCCceeeEeeCC---
Q 006743           68 TGRSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGL--------------------DKKLYTYDPGSRRPSSCITYE---  122 (633)
Q Consensus        68 ~t~~~~v~~l~~--H~~~VtsLafSPdg~~LaSgS~--------------------DGtVrIWDlrtgk~v~~i~h~---  122 (633)
                      ++.+..-.+-..  ....-+++-|.|..+.+++...                    ...|.+||+.+.+.++.+...   
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            876643333222  2334578888998899988653                    348999999999999998643   


Q ss_pred             CCeEEEEEecC--CCEEEEE-EcCCeEEEEEC-CCCCC-ceEEEeecC--C---------------CCCeeEEEEccCCC
Q 006743          123 APFSSLAFIDD--DWILTAG-TSNGRVVFYDI-RGKPQ-PLTVLRACS--S---------------SEAVSSLCWQRAKP  180 (633)
Q Consensus       123 ~~ItsLafSPd--G~~LatG-s~DGsV~IWDl-rs~~k-~v~~l~~~~--H---------------~~~VtsLafsPdg~  180 (633)
                      .....+.|..+  ..+=++| .-...|..|-- ..+.- ..+++....  .               ..-|+.|..+.|  
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD--  322 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD--  322 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT--
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC--
Confidence            23556776654  3333333 23444544433 32210 111111111  0               233677777765  


Q ss_pred             eEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          181 VFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       181 ~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                               |..+++++-.+|.|+.||+..
T Consensus       323 ---------DrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  323 ---------DRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             ---------S-EEEEEETTTTEEEEEE-SS
T ss_pred             ---------CCEEEEEcccCCcEEEEecCC
Confidence                     444456666799999999964

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.88  E-value=1.6  Score=51.07  Aligned_cols=98  Identities=21%  Similarity=0.242  Sum_probs=64.9

Q ss_pred             EEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEee--CCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECC-----CCC-
Q 006743           87 ISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCIT--YEAPFSSLAFI--DDDWILTAGTSNGRVVFYDIR-----GKP-  155 (633)
Q Consensus        87 LafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i~--h~~~ItsLafS--PdG~~LatGs~DGsV~IWDlr-----s~~-  155 (633)
                      +.-+.-++ ++.... ...+.|||.+.+.......  ..+.|.++.|.  |+|..+++.+....|.+|.-.     +.. 
T Consensus        35 i~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            33333333 444444 4489999999887655443  48899999997  488999999999999998542     111 


Q ss_pred             --CceEEEeecCCC-CCeeEEEEccCCCeEEEe
Q 006743          156 --QPLTVLRACSSS-EAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       156 --k~v~~l~~~~H~-~~VtsLafsPdg~~Las~  185 (633)
                        .+++.+....|+ .+|.+..|-++|..++.+
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s  146 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS  146 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence              234444433444 678888888876665544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=93.69  E-value=2.1  Score=48.69  Aligned_cols=141  Identities=11%  Similarity=0.024  Sum_probs=70.2

Q ss_pred             CCEEEEEECCC------cEEEEECCCCceeEEEeC-C-CCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCc
Q 006743            6 DEHLASISLSG------DLILHNLASGAKAAELKD-P-NEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSP   72 (633)
Q Consensus         6 G~~LaSgs~DG------~I~IWDl~tgk~v~~~~~-~-~~~~VssLafSpdg~~lLaSGs~D-----GtI~IWDl~t~~~   72 (633)
                      +..++.||.++      .+..||..+++... +.. . .......+.  -++ .+++.|+.+     ..+..||..+...
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNN-RIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECC-EEEEEeCCCCCEecceEEEEcCCCCce
Confidence            44555665442      57788877665422 211 1 111112222  234 377888765     3577888876552


Q ss_pred             eeEEecc--CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeeEeeC--CCCeEEEEEecCCCEEEEEEc
Q 006743           73 KVSWLKQ--HSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        73 ~v~~l~~--H~~~VtsLafSPdg~~LaSgS~D------GtVrIWDlrtgk~v~~i~h--~~~ItsLafSPdG~~LatGs~  142 (633)
                      .  ....  +...-.+++. -++++++.|+.+      +.+..||+.+++-......  .....+++ ..++.+.+.|+.
T Consensus       371 ~--~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~  446 (534)
T PHA03098        371 R--EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGI  446 (534)
T ss_pred             e--eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCc
Confidence            1  1111  1111112222 256777777732      3688999987654332211  11111222 235666677764


Q ss_pred             C--------CeEEEEECCCC
Q 006743          143 N--------GRVVFYDIRGK  154 (633)
Q Consensus       143 D--------GsV~IWDlrs~  154 (633)
                      +        ..+.+||..+.
T Consensus       447 ~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        447 SYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             cCCCCCcccceEEEecCCCC
Confidence            3        23888998875

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.54  E-value=0.059  Score=63.41  Aligned_cols=105  Identities=17%  Similarity=0.308  Sum_probs=64.7

Q ss_pred             CcEEEEECC--CCceeEEE----eCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006743           16 GDLILHNLA--SGAKAAEL----KDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI   87 (633)
Q Consensus        16 G~I~IWDl~--tgk~v~~~----~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsL   87 (633)
                      |.+.|||+.  .|+....+    ....+..+.-|.|+|-  +.-+++.+-.++.|++..+....  ...+++|...+.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDM  230 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccH
Confidence            567889875  45433322    2233444455667653  22367778888898887776554  34567798888888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        88 afSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      +|-..|-+++.+                              ++|||..++..+.||.|++|.+.
T Consensus       231 a~~~~g~~~l~~------------------------------lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  231 AFFAEGVLKLAS------------------------------LSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             HHHhhchhhhee------------------------------eCCCCcEEEEeecCCccceeeee
Confidence            776544332221                              56777777777777776666543

>PRK10115 protease 2; Provisional

Probab=93.45  E-value=21  Score=42.45  Aligned_cols=106  Identities=9%  Similarity=0.000  Sum_probs=63.2

Q ss_pred             ccCCCCEEEEEEC-C----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCC
Q 006743            2 YNCKDEHLASISL-S----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRS   71 (633)
Q Consensus         2 FSpdG~~LaSgs~-D----G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D-----GtI~IWDl~t~~   71 (633)
                      |+|||++|+.+-. +    ..|++.|+.+++.+.....   ..-..++|.++++.++++...+     ..|+.|++.+..
T Consensus       134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~  210 (686)
T PRK10115        134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA  210 (686)
T ss_pred             ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence            6899998886533 2    2588999988864332211   1113489999998666665533     368888887762


Q ss_pred             c-eeEEeccCCCCeEEEEEcC-CCCEEEEEeC---CCeEEEEeC
Q 006743           72 P-KVSWLKQHSAPTAGISFSS-DDKIIASVGL---DKKLYTYDP  110 (633)
Q Consensus        72 ~-~v~~l~~H~~~VtsLafSP-dg~~LaSgS~---DGtVrIWDl  110 (633)
                      . ....+........-..+.. ++++++..+.   ++.+.+|+.
T Consensus       211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            1 1223333333333233334 7777665543   347888885

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.44  E-value=1.7  Score=49.87  Aligned_cols=138  Identities=12%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             cEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEeCC-
Q 006743           39 VLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD----DKIIASVGLDKKLYTYDPG-  111 (633)
Q Consensus        39 ~VssLafSpdg~~lLaSGs--~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPd----g~~LaSgS~DGtVrIWDlr-  111 (633)
                      ++..++|. ||+.++.+.-  .+|.+++=|-        ...+.-..|+++.|.|-    ...++..-..+.|.+|-+. 
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds--------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS--------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCCc--------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            45667886 4554555542  2333322111        12233355999999983    3356777778889999885 


Q ss_pred             ----CCceeeEe--eC----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 006743          112 ----SRRPSSCI--TY----EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV  181 (633)
Q Consensus       112 ----tgk~v~~i--~h----~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~  181 (633)
                          .++.+...  ..    .--...+.|+|...+|++-..+..=.+++++.....++.-  ....+-|.|.||.+||+.
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD--i~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD--IKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe--ccCCceEEEEEecCcCCE
Confidence                22322211  11    1124568899999999988877776778887654433322  256788999999999998


Q ss_pred             EEEecc
Q 006743          182 FIDETT  187 (633)
Q Consensus       182 Las~s~  187 (633)
                      |+.+-.
T Consensus       170 LVVAvG  175 (671)
T PF15390_consen  170 LVVAVG  175 (671)
T ss_pred             EEEEeC
Confidence            876633

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.27  E-value=2  Score=44.19  Aligned_cols=94  Identities=11%  Similarity=0.141  Sum_probs=65.9

Q ss_pred             cEEEEEEccCCCeEEEEEeCCCeEEEEE--CCCCCce----eEEecc----CCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 006743           39 VLRVLDYSRNSRHLLVTAGDDGTLHLWD--TTGRSPK----VSWLKQ----HSAPTAGISFSSDDKIIASVGLDKKLYTY  108 (633)
Q Consensus        39 ~VssLafSpdg~~lLaSGs~DGtI~IWD--l~t~~~~----v~~l~~----H~~~VtsLafSPdg~~LaSgS~DGtVrIW  108 (633)
                      .-+.++|..+...+.++-+.+-.|.-||  +.++...    +..++.    ..-.--.+++..+|++++++-..++|...
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            3346889988877777778888898888  4443311    222221    11122345566689999999899999999


Q ss_pred             eCCCCceeeEee-CCCCeEEEEEec
Q 006743          109 DPGSRRPSSCIT-YEAPFSSLAFID  132 (633)
Q Consensus       109 Dlrtgk~v~~i~-h~~~ItsLafSP  132 (633)
                      |+.+|+.+..+. ....|+|+||--
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecC
Confidence            999999998885 467799999964

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.08  E-value=4.4  Score=42.89  Aligned_cols=152  Identities=15%  Similarity=0.156  Sum_probs=94.4

Q ss_pred             CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCCceeEE-------eccCCCCeEEEEEcCCCCEE
Q 006743           25 SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-LHLWDTTGRSPKVSW-------LKQHSAPTAGISFSSDDKII   96 (633)
Q Consensus        25 tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt-I~IWDl~t~~~~v~~-------l~~H~~~VtsLafSPdg~~L   96 (633)
                      .|+++..+.-  ......|+|+|.-..-++.+-.-|+ ..++|..+...++..       +.+|.      +|+|||.+|
T Consensus        57 aGk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~L  128 (366)
T COG3490          57 AGKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLL  128 (366)
T ss_pred             CCceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEE
Confidence            5666555432  2334457888876656666666665 568888776644322       33442      589999998


Q ss_pred             EEEeCC-----CeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecCCCEEEEEEc------C-C-----------eEEEEEC
Q 006743           97 ASVGLD-----KKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTS------N-G-----------RVVFYDI  151 (633)
Q Consensus        97 aSgS~D-----GtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPdG~~LatGs~------D-G-----------sV~IWDl  151 (633)
                      +..-+|     |.|-|||.+.+ +.+-.+ .|.-....+.|.+||+.|+.+..      | |           .+.+.|.
T Consensus       129 YATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~  208 (366)
T COG3490         129 YATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA  208 (366)
T ss_pred             EeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEec
Confidence            876544     58999999853 223333 46667788999999999987754      1 1           2344444


Q ss_pred             CCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEe
Q 006743          152 RGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       152 rs~~k~v~~l~~~--~H~~~VtsLafsPdg~~Las~  185 (633)
                      .++. .+......  .+.-.|..++..++|..++.|
T Consensus       209 atG~-liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         209 ATGN-LIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             cccc-hhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            4431 11211111  345668888888888777655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.02  E-value=9.3  Score=40.64  Aligned_cols=153  Identities=12%  Similarity=0.182  Sum_probs=101.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV------   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v------   74 (633)
                      +|+|+.+.|++..+...-.|+=..+|+.+..+.-..-.-...|.|..++. +.++--.++.++++.+.......      
T Consensus        92 Tynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~  170 (316)
T COG3204          92 TYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDADTTVISAKVQK  170 (316)
T ss_pred             eeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCCccEEeccceE
Confidence            58999999998888888777766788888876532212223467777765 55555568888888775443111      


Q ss_pred             ---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eee--Ee-e-------CCCCeEEEEEec-CCCEEEE
Q 006743           75 ---SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSS--CI-T-------YEAPFSSLAFID-DDWILTA  139 (633)
Q Consensus        75 ---~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v~--~i-~-------h~~~ItsLafSP-dG~~Lat  139 (633)
                         ......+..-..++|.|....|+.+-+.+-+.||.+.... ...  .. .       .-..|.++.|++ .+..++.
T Consensus       171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL  250 (316)
T COG3204         171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL  250 (316)
T ss_pred             EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence               1111225667899999987888888777767776654322 111  11 1       123467788887 4677788


Q ss_pred             EEcCCeEEEEECCCC
Q 006743          140 GTSNGRVVFYDIRGK  154 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~  154 (633)
                      +.+++.|.-.|....
T Consensus       251 S~ESr~l~Evd~~G~  265 (316)
T COG3204         251 SDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCceEEEEecCCC
Confidence            888898888888765

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.00  E-value=11  Score=43.30  Aligned_cols=141  Identities=13%  Similarity=0.179  Sum_probs=84.3

Q ss_pred             cEEEEECCCCceeEEEeCCCCC--------cEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeE-------Ee--
Q 006743           17 DLILHNLASGAKAAELKDPNEQ--------VLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVS-------WL--   77 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~--------~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~~~v~-------~l--   77 (633)
                      .|.-.|+++|+..-.++..+.+        ...-+.+..+|+  ..++.+.++|.+++.|-++++.+..       .+  
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            5777899999988777642211        111123334554  5788999999999999988874210       01  


Q ss_pred             --ccCC-CCe----------------------------EEEEEcCCCCEEEEEeCC------------------------
Q 006743           78 --KQHS-APT----------------------------AGISFSSDDKIIASVGLD------------------------  102 (633)
Q Consensus        78 --~~H~-~~V----------------------------tsLafSPdg~~LaSgS~D------------------------  102 (633)
                        .... .++                            ..++++|+..+++....+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence              0000 000                            114566655555443332                        


Q ss_pred             ---------CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743          103 ---------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus       103 ---------GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                               +.|.-+|+.+++.+-......+...-.+.-.+..++.+..||.++.+|.++++..
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEe
Confidence                     3577788888877765543332211112224567778888999999999999543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.91  E-value=2.5  Score=49.90  Aligned_cols=149  Identities=9%  Similarity=0.104  Sum_probs=93.2

Q ss_pred             EEEEEeCCCeEEEEECCCCCcee-----EEe----------------ccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPKV-----SWL----------------KQHSAPTAGISFSS--DDKIIASVGLDKKLYTY  108 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~v-----~~l----------------~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIW  108 (633)
                      +++++. .+.|+||+.+......     ..+                ......|+.|....  +...|+.|.+||.|.+|
T Consensus        51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Y  129 (717)
T PF08728_consen   51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLAY  129 (717)
T ss_pred             EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEEE
Confidence            566644 6899999985432110     000                00123466665554  56789999999999999


Q ss_pred             eCCC-------C-------------ceeeEeeCCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 006743          109 DPGS-------R-------------RPSSCITYEAPFSSLAFI--DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS  166 (633)
Q Consensus       109 Dlrt-------g-------------k~v~~i~h~~~ItsLafS--PdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H  166 (633)
                      .+++       .             ++...+.....+++++++  ...++||+++....|.||-...............|
T Consensus       130 yt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~  209 (717)
T PF08728_consen  130 YTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQH  209 (717)
T ss_pred             EHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccccc
Confidence            6521       0             122333456789999998  77888999888888888765542111111112346


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCC-eEEEEeeCCCeEEccCC
Q 006743          167 SEAVSSLCWQRAKPVFIDETTCKAE-TALLGGAVGDSILMPDP  208 (633)
Q Consensus       167 ~~~VtsLafsPdg~~Las~s~~sd~-~lLlSgs~Dg~IkIWDl  208 (633)
                      ...|-+|+|-++.       ....+ ..+++++-.|.+.+|++
T Consensus       210 ~hNIP~VSFl~~~-------~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  210 SHNIPNVSFLDDD-------LDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccCCCeeEeecCC-------CCCccceEEEEEeccCcEEEEEE
Confidence            7789999998742       11112 36777788898888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA02713 hypothetical protein; Provisional

Probab=92.76  E-value=1.2  Score=51.34  Aligned_cols=144  Identities=8%  Similarity=0.028  Sum_probs=75.5

Q ss_pred             CCCEEEEEECCC-----cEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCC-----------------
Q 006743            5 KDEHLASISLSG-----DLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----------------   60 (633)
Q Consensus         5 dG~~LaSgs~DG-----~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DG-----------------   60 (633)
                      +|+..+.||.++     .+..||..+.+-..  .+... ......+.+  ++. +++.|+.++                 
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEEE--CCE-EEEEeCCCcccccccccccccccccc
Confidence            466667777654     47889987654322  11111 111111222  444 777777653                 


Q ss_pred             ------eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCC-CceeeE--eeCCCCe
Q 006743           61 ------TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGS-RRPSSC--ITYEAPF  125 (633)
Q Consensus        61 ------tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D------GtVrIWDlrt-gk~v~~--i~h~~~I  125 (633)
                            .|..||..+.+.....-..+...-.+++. -++++.+.|+.+      ..|..||..+ .+-...  +...-..
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                  47788887665321100001111112222 257777777754      2467899987 444322  2211112


Q ss_pred             EEEEEecCCCEEEEEEcCC--eEEEEECCCC
Q 006743          126 SSLAFIDDDWILTAGTSNG--RVVFYDIRGK  154 (633)
Q Consensus       126 tsLafSPdG~~LatGs~DG--sV~IWDlrs~  154 (633)
                      .+++.. +|++.++|+.||  .|..||+.+.
T Consensus       506 ~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        506 LHTILH-DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             ceeEEE-CCEEEEEeeecceeehhhcCcccc
Confidence            222222 688888999888  7888888876

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.70  E-value=6.4  Score=42.84  Aligned_cols=138  Identities=15%  Similarity=0.217  Sum_probs=76.8

Q ss_pred             EEEEEccCCCeEEEEEe-----------CCC-eEEEEECCCC--C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 006743           41 RVLDYSRNSRHLLVTAG-----------DDG-TLHLWDTTGR--S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL  105 (633)
Q Consensus        41 ssLafSpdg~~lLaSGs-----------~DG-tI~IWDl~t~--~-~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtV  105 (633)
                      ..|+|.++|+ ++++-.           ..+ .|.+++-.+.  + .....+.......+.+++.+++  |+++..+..+
T Consensus        17 ~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~   93 (367)
T TIGR02604        17 IAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL   93 (367)
T ss_pred             ceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence            4589999998 444432           223 6777765322  1 1223343444556889999888  4444555444


Q ss_pred             EEEeCCCC-----ceeeEe---eC-----CCCeEEEEEecCCCEEEEEEcC-------------------CeEEEEECCC
Q 006743          106 YTYDPGSR-----RPSSCI---TY-----EAPFSSLAFIDDDWILTAGTSN-------------------GRVVFYDIRG  153 (633)
Q Consensus       106 rIWDlrtg-----k~v~~i---~h-----~~~ItsLafSPdG~~LatGs~D-------------------GsV~IWDlrs  153 (633)
                      ++.|....     +....+   ..     ......++|.|||++.++-+..                   |.|.-+|..+
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            45465321     222222   11     2447789999999876654421                   4466666655


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ..  +.++. .+ -.....++|+++|+.+++.
T Consensus       174 ~~--~e~~a-~G-~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       174 GK--LRVVA-HG-FQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             Ce--EEEEe-cC-cCCCccceECCCCCEEEEc
Confidence            42  23332 12 2345688999987776654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.63  E-value=17  Score=39.00  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=70.4

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCc
Q 006743           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRR  114 (633)
Q Consensus        36 ~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl-rtgk  114 (633)
                      ....+..+.-+++++ +++++..-....-||--......+ -+.-...|..|.|.|++.+.+.+ ..|.|+.=|. ....
T Consensus       143 ~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  143 TSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             CcceeEeEEECCCCc-EEEEECcccEEEEecCCCccceEE-ccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            446677788889987 666665544555777643332222 23456889999999998776644 8888888872 2222


Q ss_pred             eeeE----e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEE
Q 006743          115 PSSC----I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       115 ~v~~----i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~-~~H~~~VtsLafsPdg~~Las  184 (633)
                      ....    + .....+..++|.+++...++|+. |.+ +.....++ ..+.... ..-...++.|.|..+.+-++.
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGK-TWQKDRVGENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTS-S-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCc-cceECccccCCCCceEEEEEcCCCceEEE
Confidence            1111    1 13344899999998777665554 533 33444443 2222221 123456888888765444433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.29  E-value=2.9  Score=49.10  Aligned_cols=49  Identities=20%  Similarity=0.453  Sum_probs=35.2

Q ss_pred             EEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743           18 LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus        18 I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      |+||+. +|..+..+.-.|...|. +.|+.+..  |++...||+++||++-+.
T Consensus        66 I~If~~-sG~lL~~~~w~~~~lI~-mgWs~~ee--LI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   66 IRIFNI-SGQLLGRILWKHGELIG-MGWSDDEE--LICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             EEEEec-cccchHHHHhcCCCeee-ecccCCce--EEEEeccceEEEeecchh
Confidence            667775 56666555444555554 89998865  778899999999998543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.20  E-value=3.3  Score=45.10  Aligned_cols=137  Identities=12%  Similarity=0.134  Sum_probs=72.7

Q ss_pred             CccCCCCEEEEEE-----------CCC-cEEEEECCC--Cc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 006743            1 MYNCKDEHLASIS-----------LSG-DLILHNLAS--GA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL   64 (633)
Q Consensus         1 AFSpdG~~LaSgs-----------~DG-~I~IWDl~t--gk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~I   64 (633)
                      +|.++|+++++-.           ..+ .|.+++-.+  |+  ....+.. .......|++.+++  ++++ ......++
T Consensus        20 a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~-~~~~i~~~   95 (367)
T TIGR02604        20 CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVA-TPPDILFL   95 (367)
T ss_pred             eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEe-CCCeEEEE
Confidence            4778888766542           223 677776443  33  2233332 22334668888776  4443 44433334


Q ss_pred             EECCCC-----C--ceeEEecc----CCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEeCCCCc
Q 006743           65 WDTTGR-----S--PKVSWLKQ----HSAPTAGISFSSDDKIIASVGLD-------------------KKLYTYDPGSRR  114 (633)
Q Consensus        65 WDl~t~-----~--~~v~~l~~----H~~~VtsLafSPdg~~LaSgS~D-------------------GtVrIWDlrtgk  114 (633)
                      .|....     +  ..+..+..    +......++|.|||.+.++.+..                   +.|..+|..+++
T Consensus        96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~  175 (367)
T TIGR02604        96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK  175 (367)
T ss_pred             eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence            455321     1  11111221    23457889999999877765521                   345556665544


Q ss_pred             eeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743          115 PSSCITYEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus       115 ~v~~i~h~~~ItsLafSPdG~~LatGs  141 (633)
                      .......-.....++|+++|+++++-.
T Consensus       176 ~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       176 LRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEEEecCcCCCccceECCCCCEEEEcc
Confidence            322222223356788888887766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.17  E-value=0.018  Score=63.81  Aligned_cols=131  Identities=16%  Similarity=0.247  Sum_probs=95.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---   78 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~---   78 (633)
                      |.+.+..++.++.+..|..||- .++...+... .+.. -+++|..+++..++.+-..+.+++||+.....  ..+.   
T Consensus        42 w~~e~~nlavaca~tiv~~YD~-agq~~le~n~-tg~a-ldm~wDkegdvlavlAek~~piylwd~n~eyt--qqLE~gg  116 (615)
T KOG2247|consen   42 WRPEGHNLAVACANTIVIYYDK-AGQVILELNP-TGKA-LDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT--QQLESGG  116 (615)
T ss_pred             EecCCCceehhhhhhHHHhhhh-hcceecccCC-chhH-hhhhhccccchhhhhhhcCCCeeechhhhhhH--HHHhccC
Confidence            6677777888888989999995 3444333321 2233 34889988887788888899999999975542  1222   


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEE
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~Lat  139 (633)
                      .|....  +.|++....++.+...+.+.||+.++.+.+...+ |...+.+++|.+.+..+..
T Consensus       117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence            122222  6789888888999999999999999887777776 8899999999987655443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.91  E-value=0.48  Score=36.53  Aligned_cols=32  Identities=19%  Similarity=0.407  Sum_probs=29.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743          121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus       121 h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ....|.+++|+|....||.+..+|.|.+|.+.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            45679999999999999999999999999984

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.90  E-value=8  Score=44.59  Aligned_cols=117  Identities=9%  Similarity=0.074  Sum_probs=75.2

Q ss_pred             CCcEEEEEEccCC---CeEEEEEeCCCeEEEEECC-----CCCceeEEeccCCC----CeEEEEEcCCCCEEEEEeCCCe
Q 006743           37 EQVLRVLDYSRNS---RHLLVTAGDDGTLHLWDTT-----GRSPKVSWLKQHSA----PTAGISFSSDDKIIASVGLDKK  104 (633)
Q Consensus        37 ~~~VssLafSpdg---~~lLaSGs~DGtI~IWDl~-----t~~~~v~~l~~H~~----~VtsLafSPdg~~LaSgS~DGt  104 (633)
                      .+-|..+.|.|-+   .-.|.+.-..+.|.||.+.     ..+..+........    --..+.|+|....|++-.....
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            3457889999863   1145566777899999984     22211111111111    2256789998888877766655


Q ss_pred             EEEEeCCC--CceeeEeeCCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCC
Q 006743          105 LYTYDPGS--RRPSSCITYEAPFSSLAFIDDDWILTAGTSN-GRVVFYDIRG  153 (633)
Q Consensus       105 VrIWDlrt--gk~v~~i~h~~~ItsLafSPdG~~LatGs~D-GsV~IWDlrs  153 (633)
                      -.+++++.  .+...-+...+.|.|.||.+||..|+++-.. =.-+|||-..
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            55666653  3344445778899999999999888766443 3478898654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.86  E-value=3  Score=49.69  Aligned_cols=81  Identities=20%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------Cce-e--eEe---------eCCCCeEEEEEecC---CCEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGS---------RRP-S--SCI---------TYEAPFSSLAFIDD---DWIL  137 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---------gk~-v--~~i---------~h~~~ItsLafSPd---G~~L  137 (633)
                      -.|..|.++|+|.+++..|..|.+.+.=.+.         ++. +  +.+         .....|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4688899999999999999877433322221         111 1  111         13456889999996   5899


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEe
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLR  162 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~  162 (633)
                      ++=+.|+++++||+.....+..++.
T Consensus       165 ~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             EEEecCCEEEEEecCCCCCCeEEEE
Confidence            9999999999999987666655554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.80  E-value=4.7  Score=47.23  Aligned_cols=107  Identities=17%  Similarity=0.302  Sum_probs=70.2

Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCC-----C---
Q 006743           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPG-----S---  112 (633)
Q Consensus        43 LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlr-----t---  112 (633)
                      +.-+.-+. ..+.-.....+.|||...............+.|.++.|..  +++.+++.|..+.|.+|--.     .   
T Consensus        35 i~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            33444443 3333334457999999877633332334578899999964  99999999999999998542     1   


Q ss_pred             -CceeeEe---eC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743          113 -RRPSSCI---TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus       113 -gk~v~~i---~h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                       ..++..+   .+ ..+|.+.+|.++|..++.++  +.++|+|-.
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence             1233333   23 37899999999987665443  468887643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.69  E-value=0.55  Score=36.18  Aligned_cols=34  Identities=15%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR  114 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk  114 (633)
                      ....|.+++|+|...+||.+..||.|.+|.+ +++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3457999999999999999999999999998 444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.44  E-value=5.2  Score=41.40  Aligned_cols=102  Identities=13%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEE-CCCCCCce
Q 006743           83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD-IRGKPQPL  158 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS---~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWD-lrs~~k~v  158 (633)
                      .+...++++++..++...   ....|+++.....  .........+....|++++...+....+...+++. ........
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999999887776   3335666654432  22222344788889999988877777777777763 23322222


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEec
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDET  186 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s  186 (633)
                      ..+....-.+.|+.+.++|||..++...
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEE
Confidence            2222222223899999999998877553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.20  E-value=15  Score=39.30  Aligned_cols=148  Identities=18%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCe------EEEEECCCCC---ce-----eEEeccCCC--------CeEEEEEcCCC
Q 006743           36 NEQVLRVLDYSRNSRHLLVTAGDDGT------LHLWDTTGRS---PK-----VSWLKQHSA--------PTAGISFSSDD   93 (633)
Q Consensus        36 ~~~~VssLafSpdg~~lLaSGs~DGt------I~IWDl~t~~---~~-----v~~l~~H~~--------~VtsLafSPdg   93 (633)
                      .-..++.|.+.+++. .+++.+++|.      ++.+++....   ..     ...+..-.+        ...+|++.+++
T Consensus        18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG   96 (326)
T ss_pred             ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence            345678899986555 5777788888      7666664310   00     111222211        34578886688


Q ss_pred             CEEEEEeCC------CeEEEEeCCCCceeeEe----------------eCCCCeEEEEEecCCCEEEEEEc-----CC--
Q 006743           94 KIIASVGLD------KKLYTYDPGSRRPSSCI----------------TYEAPFSSLAFIDDDWILTAGTS-----NG--  144 (633)
Q Consensus        94 ~~LaSgS~D------GtVrIWDlrtgk~v~~i----------------~h~~~ItsLafSPdG~~LatGs~-----DG--  144 (633)
                      .++++--.+      ..|+.+|.. ++....+                .....+.+|+++|+|+.|+++.+     |+  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            888887777      789999976 5543332                13456889999999997776644     22  


Q ss_pred             ---------eEEEEECCCCCCceEEEeec-C------CCCCeeEEEEccCCCeEEEe
Q 006743          145 ---------RVVFYDIRGKPQPLTVLRAC-S------SSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       145 ---------sV~IWDlrs~~k~v~~l~~~-~------H~~~VtsLafsPdg~~Las~  185 (633)
                               .|..||..+...+...+... .      ....|..+.+-+++++++-.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence                     24445555422223332211 1      35678889999988887765

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.80  E-value=13  Score=41.77  Aligned_cols=137  Identities=16%  Similarity=0.156  Sum_probs=89.0

Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-
Q 006743           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-  119 (633)
Q Consensus        43 LafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-  119 (633)
                      +-|...++  .+.+-..|.+.=|-+....  .+........++|.++.|++|.+.|++--.|++|.+++....+..... 
T Consensus        28 vFfDDaNk--qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   28 VFFDDANK--QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             eeeccCcc--eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            44544444  3333445666777665433  223344455679999999999999999999999999998543332222 


Q ss_pred             ----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          120 ----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       120 ----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                          .....|...+|... .-+|.....| |.+|.+...+..++..+  .|.-.|.-..|+++.+.++-+
T Consensus       106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh--hcccCccEEEEccccceEeee
Confidence                13345889999866 5566665555 67776665544455555  577788888888876665443

>PHA03098 kelch-like protein; Provisional

Probab=90.74  E-value=6.3  Score=44.88  Aligned_cols=143  Identities=12%  Similarity=0.060  Sum_probs=71.6

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 006743            5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK   73 (633)
Q Consensus         5 dG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D------GtI~IWDl~t~~~~   73 (633)
                      +++.++.||.+     ..+..||..+++-...-.......-.+++. -++ .+++.|+.+      ..+.+||..+.+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            45566667755     347778877654322111011111111222 234 377777732      46889998765521


Q ss_pred             eEEeccCC--CCeEEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCceeeEe--eCC-CCeEEEEEecCCCEEEEE
Q 006743           74 VSWLKQHS--APTAGISFSSDDKIIASVGLDK--------KLYTYDPGSRRPSSCI--TYE-APFSSLAFIDDDWILTAG  140 (633)
Q Consensus        74 v~~l~~H~--~~VtsLafSPdg~~LaSgS~DG--------tVrIWDlrtgk~v~~i--~h~-~~ItsLafSPdG~~LatG  140 (633)
                        .+....  ..-.+++. -++..++.|+.+.        .+.+||..+++-...-  ... .....+.+  ++++++.|
T Consensus       420 --~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G  494 (534)
T PHA03098        420 --KGSPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVG  494 (534)
T ss_pred             --ecCCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEc
Confidence              111111  11112222 2566667776432        3889999876543322  111 11122222  66777777


Q ss_pred             EcC-----CeEEEEECCCC
Q 006743          141 TSN-----GRVVFYDIRGK  154 (633)
Q Consensus       141 s~D-----GsV~IWDlrs~  154 (633)
                      +.+     ..|.+||+.+.
T Consensus       495 G~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        495 GDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCcCCcccceeEEEeCCCC
Confidence            754     46888988865

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.54  E-value=34  Score=38.40  Aligned_cols=145  Identities=12%  Similarity=0.109  Sum_probs=90.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCc-----eeEEEeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCC-----
Q 006743            5 KDEHLASISLSGDLILHNLASGA-----KAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRS-----   71 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk-----~v~~~~~~~~~~VssLafSp---dg~~lLaSGs~DGtI~IWDl~t~~-----   71 (633)
                      +...|++|+..|.++||+...+.     .+.+.+  -+.+|-.|..-.   ..+...++.-.-+.+.||.+....     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence            34589999999999999986433     222222  345666666542   222234444667889999883221     


Q ss_pred             ---ceeEEeccCC--CCeEEEEEcC----C-CCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743           72 ---PKVSWLKQHS--APTAGISFSS----D-DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        72 ---~~v~~l~~H~--~~VtsLafSP----d-g~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs  141 (633)
                         ..+..+..|.  .....+++-|    . ..+|++=+.||.+.+|+-+.-.....+...--.-.+++.+.-..+++++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence               2233444443  2334444433    2 4678888999999999977644444443322334467888888899999


Q ss_pred             cCCeEEEEEC
Q 006743          142 SNGRVVFYDI  151 (633)
Q Consensus       142 ~DGsV~IWDl  151 (633)
                      .+..|..|..
T Consensus       194 ss~~l~~Yky  203 (418)
T PF14727_consen  194 SSWTLECYKY  203 (418)
T ss_pred             CceeEEEecH
Confidence            9888888865

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.48  E-value=16  Score=38.77  Aligned_cols=91  Identities=15%  Similarity=0.192  Sum_probs=46.8

Q ss_pred             eEEEEEeC-----CCeEEEEECCCCCceeEEecc--CCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCceeeEe
Q 006743           51 HLLVTAGD-----DGTLHLWDTTGRSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPSSCI  119 (633)
Q Consensus        51 ~lLaSGs~-----DGtI~IWDl~t~~~~v~~l~~--H~~~VtsLafSPdg~~LaSgS~DG----tVrIWDlrtgk~v~~i  119 (633)
                      .+++.|+.     ...+.+||..+.+..  .+..  ........+..-++++.+.|+.++    .+.+||+++.+-...-
T Consensus       125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       125 TLYVGGGNRNGKPSNKSYLFNLETQEWF--ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             EEEEEeCcCCCccCceEEEEcCCCCCee--ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence            36677764     246888998776532  1211  111112222223577778887664    3568998876543222


Q ss_pred             eC---CCCe----EEEEEecCCCEEEEEEcC
Q 006743          120 TY---EAPF----SSLAFIDDDWILTAGTSN  143 (633)
Q Consensus       120 ~h---~~~I----tsLafSPdG~~LatGs~D  143 (633)
                      ..   ..+.    .+.+...++++++.|+.+
T Consensus       203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       203 DPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            11   1111    111122356778888766

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.46  E-value=3.9  Score=45.72  Aligned_cols=127  Identities=10%  Similarity=0.024  Sum_probs=66.0

Q ss_pred             CCcEEEEECCCCceeEEEeCCCCC-cEEEEEEcc--CCCeEEEEEeCCCeEEEEEC-CCCCce---eEEecc--------
Q 006743           15 SGDLILHNLASGAKAAELKDPNEQ-VLRVLDYSR--NSRHLLVTAGDDGTLHLWDT-TGRSPK---VSWLKQ--------   79 (633)
Q Consensus        15 DG~I~IWDl~tgk~v~~~~~~~~~-~VssLafSp--dg~~lLaSGs~DGtI~IWDl-~t~~~~---v~~l~~--------   79 (633)
                      ..++.+||+.+.+.++.+.-.... ..-.|.|.+  +..+-|+.+.-..+|..|-. +.++..   +..+..        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            457999999999999998754433 344567754  45555666666677766654 333211   111111        


Q ss_pred             ---------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce---eeEeeC-----------------CCCeEEEE
Q 006743           80 ---------HSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRP---SSCITY-----------------EAPFSSLA  129 (633)
Q Consensus        80 ---------H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~---v~~i~h-----------------~~~ItsLa  129 (633)
                               -..-|++|.++.|.++|+..+ .+|.|+.||+.+...   +..+..                 .+...-|.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                     134589999999888887666 688999999976432   222111                 12346678


Q ss_pred             EecCCCEEEEEE
Q 006743          130 FIDDDWILTAGT  141 (633)
Q Consensus       130 fSPdG~~LatGs  141 (633)
                      .+-||+.|...+
T Consensus       381 lS~DGkRlYvTn  392 (461)
T PF05694_consen  381 LSLDGKRLYVTN  392 (461)
T ss_dssp             E-TTSSEEEEE-
T ss_pred             EccCCeEEEEEe
Confidence            888888887664

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.39  E-value=9.4  Score=45.96  Aligned_cols=115  Identities=15%  Similarity=0.221  Sum_probs=77.9

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCCCe----------EEEEEcCCCCEEEEEeCC
Q 006743           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSAPT----------AGISFSSDDKIIASVGLD  102 (633)
Q Consensus        37 ~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~----~~~v~~l~~H~~~V----------tsLafSPdg~~LaSgS~D  102 (633)
                      +....+|+|+|.....||+....|...|||+...    .........+.+.|          ..+.|.++.+.|+.++..
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~  224 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS  224 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence            3456679999988778999999999999999211    11122222222222          478898888888888765


Q ss_pred             CeEEEEeCCCCceee-Ee--eCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 006743          103 KKLYTYDPGSRRPSS-CI--TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       103 GtVrIWDlrtgk~v~-~i--~h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~  154 (633)
                       .+.++|+++..... ..  .....|..+.-+++  +..++. + ...|.+.|+...
T Consensus       225 -~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-T-s~eiiw~~~~~~  278 (765)
T PF10214_consen  225 -KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-T-SKEIIWLDVKSS  278 (765)
T ss_pred             -ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-e-cCeEEEEEccCC
Confidence             58999999876533 22  35577999998887  333333 2 266888888873

These proteins are found in fungi.

>PHA02790 Kelch-like protein; Provisional

Probab=90.22  E-value=16  Score=41.44  Aligned_cols=140  Identities=12%  Similarity=0.030  Sum_probs=68.9

Q ss_pred             CCEEEEEECCC-----cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEec
Q 006743            6 DEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         6 G~~LaSgs~DG-----~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v~~l~   78 (633)
                      +..+++||.++     .+..||..+++....-.-.....-.+++ .-++. +++.|+.+  ..+..||......  ..+.
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~-iYviGG~~~~~sve~ydp~~n~W--~~~~  347 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNK-LYVVGGLPNPTSVERWFHGDAAW--VNMP  347 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCE-EEEECCcCCCCceEEEECCCCeE--EECC
Confidence            34556676543     4677887765432211111111111122 22444 77777754  3588888765542  1111


Q ss_pred             cCCCCeE--EEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           79 QHSAPTA--GISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        79 ~H~~~Vt--sLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      .-..+..  +++. -++++.+.|+.++   .+..||.++++-...-.  ....-.+++ .-+|++.+.|   |.+.+||.
T Consensus       348 ~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp  422 (480)
T PHA02790        348 SLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCE  422 (480)
T ss_pred             CCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecC
Confidence            1111111  2222 2677778887654   47789988765433221  111111222 2356666666   35788998


Q ss_pred             CCC
Q 006743          152 RGK  154 (633)
Q Consensus       152 rs~  154 (633)
                      ++.
T Consensus       423 ~~~  425 (480)
T PHA02790        423 SSN  425 (480)
T ss_pred             CCC
Confidence            765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.00  E-value=2.2  Score=43.43  Aligned_cols=64  Identities=11%  Similarity=0.100  Sum_probs=47.6

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeeEe---------------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           90 SSDDKIIASVGLDKKLYTYDPGSRRPSSCI---------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        90 SPdg~~LaSgS~DGtVrIWDlrtgk~v~~i---------------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      ..+++++++.+.+|.+++||+.+++.+..-               .....|..+.++.+|.-|++- .+|..+.||..-.
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~   97 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG   97 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence            346889999999999999999987764322               133567888888788766654 4578888887654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK10115 protease 2; Provisional

Probab=88.46  E-value=56  Score=38.98  Aligned_cols=112  Identities=7%  Similarity=0.050  Sum_probs=68.6

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEE
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYT  107 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D------GtVrI  107 (633)
                      ..+..+.|+|+++.++++.+.+|    .|++.|+.++......+..   .-..++|.+|++.|+....+      ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            44667889999995555544444    5889999876632222221   12569999988877666542      37888


Q ss_pred             EeCCCC--ceeeEee-CCCCeEEEEE-ecCCCEEEEEEc---CCeEEEEECC
Q 006743          108 YDPGSR--RPSSCIT-YEAPFSSLAF-IDDDWILTAGTS---NGRVVFYDIR  152 (633)
Q Consensus       108 WDlrtg--k~v~~i~-h~~~ItsLaf-SPdG~~LatGs~---DGsV~IWDlr  152 (633)
                      +++.++  +...++. .........+ +.++++++....   ++.+.+|+..
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            999887  3333333 2233332333 338887765543   4568999854

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.07  E-value=19  Score=36.74  Aligned_cols=101  Identities=16%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             CCCEEEEEECC--CcEEEEECCCCceeEEEeCCC----CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            5 KDEHLASISLS--GDLILHNLASGAKAAELKDPN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         5 dG~~LaSgs~D--G~I~IWDl~tgk~v~~~~~~~----~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|.++.+.+.-  ..|++||+.+++.+....-..    ++.++     .-++.+.+-.-.+|.-.+||.++-++.-..  
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-----~~gd~~y~LTw~egvaf~~d~~t~~~lg~~--  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-----KLGDYFYQLTWKEGVAFKYDADTLEELGRF--  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCcccccccee-----eccceEEEEEeccceeEEEChHHhhhhccc--
Confidence            35555555543  479999999998876654321    12222     123334555567888899999876643221  


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR  114 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk  114 (633)
                      ...+.=+.++  .|++.|+.++...+++.-|.++-.
T Consensus       128 ~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         128 SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             ccCCcceeee--cCCcceEeeCCceEEEecCHHHhh
Confidence            1223334444  356667777777788888877643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.06  E-value=47  Score=40.14  Aligned_cols=148  Identities=14%  Similarity=0.169  Sum_probs=85.9

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEE-------------EEEEcc--CCCeEEEEEeC----------C
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-------------VLDYSR--NSRHLLVTAGD----------D   59 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vs-------------sLafSp--dg~~lLaSGs~----------D   59 (633)
                      ++++|+.++.|+.|+-.|.++|+.+..+..  ...|.             .+.-.|  .+. .++.|+.          +
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~  335 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPS  335 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCC
Confidence            345788899999999999999998876642  11110             000011  122 4555642          6


Q ss_pred             CeEEEEECCCCCceeEEeccC--------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCCe
Q 006743           60 GTLHLWDTTGRSPKVSWLKQH--------SA--------PT-AGISFSSDDKIIASVG------------------LDKK  104 (633)
Q Consensus        60 GtI~IWDl~t~~~~v~~l~~H--------~~--------~V-tsLafSPdg~~LaSgS------------------~DGt  104 (633)
                      |.|+-+|.++++..-..-...        .+        .+ ..+++.++..+++.+.                  ..+.
T Consensus       336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence            889999999888432211110        00        11 2234455444444322                  1246


Q ss_pred             EEEEeCCCCceeeEee---CC-------CCeEEEEEec-CCC---EEEEEEcCCeEEEEECCCCC
Q 006743          105 LYTYDPGSRRPSSCIT---YE-------APFSSLAFID-DDW---ILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus       105 VrIWDlrtgk~v~~i~---h~-------~~ItsLafSP-dG~---~LatGs~DGsV~IWDlrs~~  155 (633)
                      |.-.|+++++..-.+.   |.       ....-+.+.. +|+   .|+.++.+|.++++|.++++
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            7778888888775552   21       1111122322 553   78899999999999999984

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.93  E-value=42  Score=35.99  Aligned_cols=118  Identities=15%  Similarity=0.212  Sum_probs=62.5

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      ...-...+..+.-++++++++++..-..+.-||.....-. +.......|..|.|.|++...+++ ..|.|++=+.....
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            4455577899988999999988887777788886542222 222356789999999998776654 88888887722211


Q ss_pred             CceEE--EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743          156 QPLTV--LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (633)
Q Consensus       156 k~v~~--l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs  198 (633)
                      .....  .......-.+..++|.+++...++++   .+.++++..
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg---~G~l~~S~D  260 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG---SGTLLVSTD  260 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEES---TT-EEEESS
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeC---CccEEEeCC
Confidence            11110  11111223478999999877777662   345555544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.79  E-value=15  Score=34.83  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=68.8

Q ss_pred             CCCEEEEEECCCcEEEEECCCCc--------eeEEEeCCCCCcEEEEEEcc----CCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            5 KDEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSR----NSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk--------~v~~~~~~~~~~VssLafSp----dg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      ....|+.++..|+|.|++.....        .+..+.  -...|++|+-.+    ++...|+.|+. ..|..||+.....
T Consensus         9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d   85 (136)
T PF14781_consen    9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSD   85 (136)
T ss_pred             CceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCch
Confidence            34478888899999999875332        333443  345667776443    23346776665 6799999987763


Q ss_pred             eeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCcee
Q 006743           73 KVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPS  116 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSP---dg~~LaSgS~DGtVrIWDlrtgk~v  116 (633)
                        ...+.-...|+++.+-.   ...-++.++.+..|.-||....+..
T Consensus        86 --~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   86 --LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             --hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence              34555667888887743   2344555666777888887654443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.67  E-value=18  Score=43.20  Aligned_cols=73  Identities=14%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             cEEEEEEccCCCeEEEEEeCCCeEEEEECCC----------CCcee--EEe--------ccCCCCeEEEEEcCC---CCE
Q 006743           39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG----------RSPKV--SWL--------KQHSAPTAGISFSSD---DKI   95 (633)
Q Consensus        39 ~VssLafSpdg~~lLaSGs~DGtI~IWDl~t----------~~~~v--~~l--------~~H~~~VtsLafSPd---g~~   95 (633)
                      .|..|.++++|. +++..|..| |.|-.+..          ++..+  +.+        ..+...|..+.|+|.   +.+
T Consensus        86 ~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            466788999998 555555545 44444421          11111  111        234568999999994   689


Q ss_pred             EEEEeCCCeEEEEeCCCC
Q 006743           96 IASVGLDKKLYTYDPGSR  113 (633)
Q Consensus        96 LaSgS~DGtVrIWDlrtg  113 (633)
                      |++-..|+++|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.57  E-value=45  Score=35.92  Aligned_cols=202  Identities=13%  Similarity=0.111  Sum_probs=111.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC-------CCceeEEEeCC----CCCcEEEEEEccCCC-----------eEEEEEeC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLA-------SGAKAAELKDP----NEQVLRVLDYSRNSR-----------HLLVTAGD   58 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~-------tgk~v~~~~~~----~~~~VssLafSpdg~-----------~lLaSGs~   58 (633)
                      +|+|.+.+-++....+...+||..       ....+..+...    .....+.+.|+....           ..++.+++
T Consensus        29 a~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE  108 (336)
T TIGR03118        29 SYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE  108 (336)
T ss_pred             EecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence            477888777777778899999986       11233344321    123456677764322           23677899


Q ss_pred             CCeEEEEECCCCCc----eeEEecc-CCCCe-EEEEEcC--CCCEEEEEe-CCCeEEEEeCCCCceee------------
Q 006743           59 DGTLHLWDTTGRSP----KVSWLKQ-HSAPT-AGISFSS--DDKIIASVG-LDKKLYTYDPGSRRPSS------------  117 (633)
Q Consensus        59 DGtI~IWDl~t~~~----~v~~l~~-H~~~V-tsLafSP--dg~~LaSgS-~DGtVrIWDlrtgk~v~------------  117 (633)
                      ||+|.-|.-.-...    ....+.. ....| ..+++..  .+.+|+.+. ..++|.+||-.-.+...            
T Consensus       109 dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPag  188 (336)
T TIGR03118       109 DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAG  188 (336)
T ss_pred             CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCC
Confidence            99999998532221    1222221 12333 3455543  355555554 56788888854322110            


Q ss_pred             -------EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          118 -------CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       118 -------~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                             .+...-.|+-..-.++.+.=+.|-.-|.|-+||+...  .++.+...+.-..-+.|+..|-     .+ ..-.
T Consensus       189 yAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa-----~F-G~~s  260 (336)
T TIGR03118       189 YAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPE-----SF-GSLS  260 (336)
T ss_pred             CCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChh-----hh-CCCC
Confidence                   0000011222222333333344555688999999864  3333433344455667777662     11 2235


Q ss_pred             CeEEEEeeCCCeEEccCCCC
Q 006743          191 ETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +.+|+..-.|++|..+|...
T Consensus       261 g~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             CCeEEeecCCceeEEecCCC
Confidence            67788888899999999753

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=87.47  E-value=24  Score=43.84  Aligned_cols=183  Identities=12%  Similarity=0.128  Sum_probs=99.3

Q ss_pred             CCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc-------CC-CeEEEEEe---------CCCeEEEEECCC-----CC-
Q 006743           15 SGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-------NS-RHLLVTAG---------DDGTLHLWDTTG-----RS-   71 (633)
Q Consensus        15 DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSp-------dg-~~lLaSGs---------~DGtI~IWDl~t-----~~-   71 (633)
                      ...|.+.+.++++.+..+.-...+.|.+++..-       .+ +.+|++|.         .-|.++|||+-.     ++ 
T Consensus      1003 ~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP 1082 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP 1082 (1366)
T ss_pred             cceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCC
Confidence            345666666666666555443445555555421       11 23666663         247899999821     21 


Q ss_pred             -----ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           72 -----PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        72 -----~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl-rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                           .+....+..++.|..++=- +|.++ ++. ..+|.+|++ +....+-.--..-++......--.++|+.|.--..
T Consensus      1083 ~t~~KlKel~~eE~KGtVsavceV-~G~l~-~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1083 FTKNKLKELYIEEQKGTVSAVCEV-RGHLL-SSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred             cccceeeeeehhhcccceEEEEEe-ccEEE-Ecc-CcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhc
Confidence                 1122334566778777643 45444 333 346999999 44444322112223333333334667778877777


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      |.+.-.......+..+......-.+.++.|--+|          ....++.+..|+.|.++-..|
T Consensus      1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg----------~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDG----------SNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred             eEEEEEccCceEEEEeecCCchhhceeeeeEEcC----------CeeEEEEEcCCCcEEEEEeCC
Confidence            7776665543333333322334456777765543          445566677799888875433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.30  E-value=6.7  Score=43.91  Aligned_cols=134  Identities=10%  Similarity=0.097  Sum_probs=83.0

Q ss_pred             CCCEEEEEECCCcEEEEECCC--CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---eEEecc
Q 006743            5 KDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---VSWLKQ   79 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~t--gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~---v~~l~~   79 (633)
                      |.+..+.|-..|.+.-|.+..  ....-.+.....+.|..++|++|+. .|+.--.|++|.+++....+..   .+..+.
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~  110 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKT  110 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence            344444455556666665532  2233334434566899999999987 8999899999999998544422   233444


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCceeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDP--GSRRPSSCITYEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl--rtgk~v~~i~h~~~ItsLafSPdG~~LatGs  141 (633)
                      .+..|.+++|..+ .-++.....| +-+|-+  ..........+...|.--.|.++-+.++.++
T Consensus       111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            5566999999955 5666666666 444443  3222222224667777777888766655443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=85.94  E-value=63  Score=35.98  Aligned_cols=70  Identities=14%  Similarity=0.193  Sum_probs=49.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      .+++..|+++|+++++|.-..+|.+.++...-.+....+.  .......|.|+-+...++.-  +..|.++...
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~  287 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD  287 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCC
Confidence            3689999999999999999999999998876555555553  34677888888654333222  4456665533

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=85.54  E-value=57  Score=39.40  Aligned_cols=141  Identities=9%  Similarity=0.138  Sum_probs=84.5

Q ss_pred             CCCcEEEEEEc---cC--CCeEEEEEeCCCeEEEEECCCC------C--------ceeEEec---cCCCCeEEEEEcC-C
Q 006743           36 NEQVLRVLDYS---RN--SRHLLVTAGDDGTLHLWDTTGR------S--------PKVSWLK---QHSAPTAGISFSS-D   92 (633)
Q Consensus        36 ~~~~VssLafS---pd--g~~lLaSGs~DGtI~IWDl~t~------~--------~~v~~l~---~H~~~VtsLafSP-d   92 (633)
                      ...+|..|+|.   ..  ....++..-....+.|+...-.      .        ..+..+.   -...+..+++|+| +
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            46678888887   21  1112444455567777772111      1        0122222   1234678899999 7


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc-----eeeEe-eCCC----------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           93 DKIIASVGLDKKLYTYDPGSRR-----PSSCI-TYEA----------PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        93 g~~LaSgS~DGtVrIWDlrtgk-----~v~~i-~h~~----------~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      ...||+....|...|||+....     ..... ...+          ....+.|.++...|++++. ..+.++|+++...
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~  236 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQ  236 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCCc
Confidence            7899999999999999992111     11111 1112          2347889888788877765 5589999998643


Q ss_pred             ceEEEeecCCCCCeeEEEEccC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPd  178 (633)
                      ... +........|..+.-++.
T Consensus       237 ~~~-l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  237 TEY-LVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             cch-hccCCChhheeeEEecCC
Confidence            211 222234566777777765

These proteins are found in fungi.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=85.50  E-value=34  Score=35.57  Aligned_cols=130  Identities=17%  Similarity=0.188  Sum_probs=80.1

Q ss_pred             cEEEEEEccCCCeEEEEEe--C--------CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEE
Q 006743           39 VLRVLDYSRNSRHLLVTAG--D--------DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV-GLDKKLYT  107 (633)
Q Consensus        39 ~VssLafSpdg~~lLaSGs--~--------DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSg-S~DGtVrI  107 (633)
                      ..++-..+|+|+ + +.|.  +        .|.++.|-....-   ..+...-..-+.++|+-+.+.+... +.+-.|.-
T Consensus       110 R~NDgkvdP~Gr-y-y~GtMad~~~~le~~~g~Ly~~~~~h~v---~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  110 RLNDGKVDPDGR-Y-YGGTMADFGDDLEPIGGELYSWLAGHQV---ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             ccccCccCCCCc-e-eeeeeccccccccccccEEEEeccCCCc---eeeehhccCCccccccccCcEEEEEccCceEEee
Confidence            344556788998 3 3332  2        2455666554332   2233333455788999877766555 45667877


Q ss_pred             Ee--CCCCcee-----eEeeC----C-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEE
Q 006743          108 YD--PGSRRPS-----SCITY----E-APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW  175 (633)
Q Consensus       108 WD--lrtgk~v-----~~i~h----~-~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLaf  175 (633)
                      ||  ..+|...     ..+..    + -..-.+++..+|+..++.-..++|...|+.+++ .+..+..  ....|+|+||
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK-~L~eikl--Pt~qitsccF  261 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK-ILLEIKL--PTPQITSCCF  261 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc-EEEEEEc--CCCceEEEEe
Confidence            87  5555332     22211    1 123356667788888888888999999999984 4455553  3678999998


Q ss_pred             c
Q 006743          176 Q  176 (633)
Q Consensus       176 s  176 (633)
                      -
T Consensus       262 g  262 (310)
T KOG4499|consen  262 G  262 (310)
T ss_pred             c
Confidence            4

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.48  E-value=46  Score=37.09  Aligned_cols=110  Identities=14%  Similarity=0.130  Sum_probs=62.3

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQ--HSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (633)
Q Consensus        35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~---~v~~l~~--H~~~VtsLafSPdg~~LaSgS~DGtVrIWD  109 (633)
                      .....+..+.|.+++.  ++.++.+|.+..=+-.....   ....+..  ....+.++.|.+++.. +.++.+|.+....
T Consensus       278 ~~~~~l~~v~~~~dg~--l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~  354 (398)
T PLN00033        278 ASARRIQNMGWRADGG--LWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRST  354 (398)
T ss_pred             CCccceeeeeEcCCCC--EEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeC
Confidence            3455678889998887  44455677765433332211   0111111  2235888999876654 5556677665553


Q ss_pred             CCCCceeeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743          110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (633)
Q Consensus       110 lrtgk~v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IW  149 (633)
                       ..++.-...    .....++.+.|.++++.++ .+.+|.|.-|
T Consensus       355 -D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~il~~  396 (398)
T PLN00033        355 -DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGVLLRY  396 (398)
T ss_pred             -CCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcEEEEe
Confidence             334432222    2345688999887765554 4566776554

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.38  E-value=43  Score=41.27  Aligned_cols=155  Identities=14%  Similarity=0.157  Sum_probs=90.2

Q ss_pred             cEEEEECCCCceeEEEeCCC---CCcEEEEEEccCCCe-EEEEEe-----------CCCeEEEEECCCCCceeEEecc--
Q 006743           17 DLILHNLASGAKAAELKDPN---EQVLRVLDYSRNSRH-LLVTAG-----------DDGTLHLWDTTGRSPKVSWLKQ--   79 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~---~~~VssLafSpdg~~-lLaSGs-----------~DGtI~IWDl~t~~~~v~~l~~--   79 (633)
                      .|+++|..+++.++.+.-..   .-.+..+.|+..+.. ++++|.           .+|.++.|++-........+..  
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            48899988888777665322   223555666655443 333332           2355788877433322333221  


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      -.+.|.  +..|...++++| ....+++||+...++.+...   ....|..+++.  +..|++|...-.|+++-.+...+
T Consensus       934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred             CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCC
Confidence            223333  455644444444 44689999998877765542   35567777775  67888888877777766655444


Q ss_pred             ceEEEeecCCCCCeeEEEEc
Q 006743          157 PLTVLRACSSSEAVSSLCWQ  176 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafs  176 (633)
                      .+..+..-.-...|+++.+-
T Consensus      1009 ~l~~fadD~~pR~Vt~~~~l 1028 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALELL 1028 (1205)
T ss_pred             eEEEEeCCCccceeeEEEEe
Confidence            44455433444556666654

>PRK13684 Ycf48-like protein; Provisional

Probab=84.77  E-value=30  Score=37.32  Aligned_cols=143  Identities=10%  Similarity=0.102  Sum_probs=74.5

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-Eec--c
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WLK--Q   79 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~-~l~--~   79 (633)
                      .+++.+++++ ..|.+..-.-..++.-..+.......+.++.+.++++ +++ .+..|.+++=....+..-.. ...  .
T Consensus       181 ~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~-vg~~G~~~~~s~d~G~sW~~~~~~~~~  257 (334)
T PRK13684        181 SPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWM-LARGGQIRFNDPDDLESWSKPIIPEIT  257 (334)
T ss_pred             CCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEE-EecCCEEEEccCCCCCccccccCCccc
Confidence            4555555444 4554443211222333333434456788889999887 444 45668765432333221010 000  0


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      ....+..+.+.+++..+ .++.+|.|.. -...++.-...    ......+.+.|..+++.++ .+..|.|.-|+-
T Consensus       258 ~~~~l~~v~~~~~~~~~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        258 NGYGYLDLAYRTPGEIW-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             cccceeeEEEcCCCCEE-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence            12357888998876654 4556675543 33334332222    1223577788876665544 556788877764

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.61  E-value=10  Score=47.22  Aligned_cols=140  Identities=21%  Similarity=0.269  Sum_probs=83.1

Q ss_pred             EECCCcEEEEECCCCceeEEEeCCCCCcEEEEE-------EccCCCeEEEEEeCCCeEEEEECCC----CCce----eEE
Q 006743           12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLD-------YSRNSRHLLVTAGDDGTLHLWDTTG----RSPK----VSW   76 (633)
Q Consensus        12 gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLa-------fSpdg~~lLaSGs~DGtI~IWDl~t----~~~~----v~~   76 (633)
                      .+.|+.+.+|+.+++.....+.+-....+...-       |.|.=+++|+.+. --.|.|+-+.-    ....    ...
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccccccee
Confidence            456899999999987776666542222222211       2333344455443 35566665521    1100    011


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEE--EeCCCC---c-e-----------------eeEe-eCCCCeEEEEEec
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYT--YDPGSR---R-P-----------------SSCI-TYEAPFSSLAFID  132 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI--WDlrtg---k-~-----------------v~~i-~h~~~ItsLafSP  132 (633)
                      +......|+|+....+|+.|++|-+| .|+-  |....+   + +                 .... .+..+|..+.++.
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            22335678899877788877766655 3331  111111   1 1                 1111 2467899999998


Q ss_pred             CCCEEEEEEcCCeEEEEECCC
Q 006743          133 DDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus       133 dG~~LatGs~DGsV~IWDlrs  153 (633)
                      .-.++.+-+..|+|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            888999999999999999986

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=84.42  E-value=0.25  Score=58.39  Aligned_cols=109  Identities=10%  Similarity=0.111  Sum_probs=59.4

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEE-----------EEEccCCCeEEEEEeCCCeEEEEECC----
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV-----------LDYSRNSRHLLVTAGDDGTLHLWDTT----   68 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vss-----------LafSpdg~~lLaSGs~DGtI~IWDl~----   68 (633)
                      ++.-++..+-.++.|++.++.+... ..+.+ |...+..           -..+|||. .|++++.||.++.|.+-    
T Consensus       193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~  269 (1283)
T KOG1916|consen  193 VNKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK  269 (1283)
T ss_pred             cccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence            3445666677788888877654322 22333 3222222           23688998 89999999999888762    


Q ss_pred             -CCCceeEEeccCC-CCeEEEEEcCCC---------CEEEEEe-CCCeEEEEeCCCCcee
Q 006743           69 -GRSPKVSWLKQHS-APTAGISFSSDD---------KIIASVG-LDKKLYTYDPGSRRPS  116 (633)
Q Consensus        69 -t~~~~v~~l~~H~-~~VtsLafSPdg---------~~LaSgS-~DGtVrIWDlrtgk~v  116 (633)
                       ...+ .+.++.|. .+-.|.-++.+.         .++++++ .+..+++|.....+|.
T Consensus       270 ~~~rc-lhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  270 IVHRC-LHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccHhh-hhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence             1112 34455565 333332233211         1233333 3446888877665554

>PLN02153 epithiospecifier protein

Probab=84.30  E-value=39  Score=36.15  Aligned_cols=144  Identities=15%  Similarity=0.139  Sum_probs=68.4

Q ss_pred             CCEEEEEECC-----CcEEEEECCCCceeE--EEeC---CCCCcEEEEEEccCCCeEEEEEeCC-----------CeEEE
Q 006743            6 DEHLASISLS-----GDLILHNLASGAKAA--ELKD---PNEQVLRVLDYSRNSRHLLVTAGDD-----------GTLHL   64 (633)
Q Consensus         6 G~~LaSgs~D-----G~I~IWDl~tgk~v~--~~~~---~~~~~VssLafSpdg~~lLaSGs~D-----------GtI~I   64 (633)
                      ++.++.|+.+     ..+.+||+.+.+-..  .+..   .....-.+++. -++ .+++.|+.+           ..|.+
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DEN-HVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECC-EEEEECCccCCCccCCCcccceEEE
Confidence            4445556543     357788887654321  1100   11111112222 233 367777754           25788


Q ss_pred             EECCCCCceeEEeccC-----CCCeEEEEEcCCCCEEEEEeCC-------------CeEEEEeCCCCceeeEeeC---C-
Q 006743           65 WDTTGRSPKVSWLKQH-----SAPTAGISFSSDDKIIASVGLD-------------KKLYTYDPGSRRPSSCITY---E-  122 (633)
Q Consensus        65 WDl~t~~~~v~~l~~H-----~~~VtsLafSPdg~~LaSgS~D-------------GtVrIWDlrtgk~v~~i~h---~-  122 (633)
                      ||..+....  .+...     ...-.+++. -++++++.++.+             ..|.+||+.+.+-......   . 
T Consensus       164 yd~~~~~W~--~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~  240 (341)
T PLN02153        164 YNIADGKWV--QLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS  240 (341)
T ss_pred             EECCCCeEe--eCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence            898766522  11111     111112222 256666655532             3688999987654433211   1 


Q ss_pred             CCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCC
Q 006743          123 APFSSLAFIDDDWILTAGTSN--------------GRVVFYDIRGK  154 (633)
Q Consensus       123 ~~ItsLafSPdG~~LatGs~D--------------GsV~IWDlrs~  154 (633)
                      ......+..-++++++.|+..              ..|+.||+.+.
T Consensus       241 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        241 ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            111111122246777777742              25778887764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=84.29  E-value=3.7  Score=31.17  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=26.9

Q ss_pred             CCeEEEEEecCC---CEEEEEEcCCeEEEEECCCC
Q 006743          123 APFSSLAFIDDD---WILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       123 ~~ItsLafSPdG---~~LatGs~DGsV~IWDlrs~  154 (633)
                      +.|.++.|+|.+   ..|+..-..|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            478999999854   58888888899999999953

It contains a characteristic DLL sequence motif.

>PRK13684 Ycf48-like protein; Provisional

Probab=83.98  E-value=67  Score=34.64  Aligned_cols=141  Identities=14%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEE-ECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLW-DTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (633)
Q Consensus        37 ~~~VssLafSpdg~~lLaSGs~DGtI~IW-Dl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~  115 (633)
                      ...+.++.+.+++.  ++..+..|.+..- |-..... ......-...++++.+.++++.++++ ..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGK--YVAVSSRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCe--EEEEeCCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45677888888865  4455556765532 2221111 12223344678999999988876654 567665433333332


Q ss_pred             eeEee-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEE
Q 006743          116 SSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       116 v~~i~-----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~-~~H~~~VtsLafsPdg~~Las  184 (633)
                      -....     ....+..+.+.+++..++ ++.+|.|.. ....+ +....... ..-....+.+.|..+++.++.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKGFVL  319 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence            22111     224578899998877555 445675553 33333 22222221 111234666776654444443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.83  E-value=29  Score=35.38  Aligned_cols=101  Identities=11%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC------eEEEE---eCC--CCceee---
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK------KLYTY---DPG--SRRPSS---  117 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG------tVrIW---Dlr--tgk~v~---  117 (633)
                      .|+.+...+.|.+|++.........-..--+.|..+.++..|++|++--.+.      .+|+|   +..  ...++.   
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi  109 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI  109 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence            4545466788999999854444444444558899999999999999965432      45654   221  111111   


Q ss_pred             --------------------EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743          118 --------------------CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus       118 --------------------~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                                          .+.....+.+++..|-.--|++|+ ++++.+|.+..
T Consensus       110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence                                112345677888888544445554 46788887764

>PLN02153 epithiospecifier protein

Probab=83.15  E-value=37  Score=36.27  Aligned_cols=102  Identities=14%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             eEEEEEeCC-----CeEEEEECCCCCcee-EEec----cCCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEe
Q 006743           51 HLLVTAGDD-----GTLHLWDTTGRSPKV-SWLK----QHSAPTAGISFSSDDKIIASVGLD-----------KKLYTYD  109 (633)
Q Consensus        51 ~lLaSGs~D-----GtI~IWDl~t~~~~v-~~l~----~H~~~VtsLafSPdg~~LaSgS~D-----------GtVrIWD  109 (633)
                      .+++.|+.+     ..+.+||..+.+... ..+.    .....-.+++. -++++++.|+.+           ..|.+||
T Consensus        87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd  165 (341)
T PLN02153         87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYN  165 (341)
T ss_pred             EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEE
Confidence            477777753     357889987655211 1110    00111112222 256677777754           2578899


Q ss_pred             CCCCceeeEeeC----CCC-eEEEEEecCCCEEEEEEcC-------------CeEEEEECCCC
Q 006743          110 PGSRRPSSCITY----EAP-FSSLAFIDDDWILTAGTSN-------------GRVVFYDIRGK  154 (633)
Q Consensus       110 lrtgk~v~~i~h----~~~-ItsLafSPdG~~LatGs~D-------------GsV~IWDlrs~  154 (633)
                      +++.+-...-..    ... -.+++. -++++++.|+.+             ..|.+||+.+.
T Consensus       166 ~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~  227 (341)
T PLN02153        166 IADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG  227 (341)
T ss_pred             CCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence            887654322111    111 112222 256666665532             35888888765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.74  E-value=17  Score=41.35  Aligned_cols=137  Identities=16%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             EEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC-------eEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006743           11 SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-------HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (633)
Q Consensus        11 Sgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~-------~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~   83 (633)
                      .|+....++-.|++.|+.+.+... +..+  .|.|.|...       ..|+ |-.+..|.-.|.+-...++. .......
T Consensus       485 dg~~~~kLykmDIErGkvveeW~~-~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~-v~esKdY  559 (776)
T COG5167         485 DGGERDKLYKMDIERGKVVEEWDL-KDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK-VVESKDY  559 (776)
T ss_pred             cCCCcccceeeecccceeeeEeec-CCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee-eeeehhc
Confidence            355566788888889998888775 3333  467887531       1343 44455565556543332222 2222333


Q ss_pred             eEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           84 TAGISFSS----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        84 VtsLafSP----dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      ++--.|+.    ...+|+.++..|.|++||--.-+....+ +.+..|..+....+|++|++.|. .++.+.|++-
T Consensus       560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence            33333432    4568999999999999996443333333 56788999999999999887776 5677777764

>PHA02790 Kelch-like protein; Provisional

Probab=82.74  E-value=25  Score=39.90  Aligned_cols=140  Identities=12%  Similarity=-0.010  Sum_probs=68.7

Q ss_pred             CCCEEEEEECC--CcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCCceeEEe
Q 006743            5 KDEHLASISLS--GDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDG---TLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         5 dG~~LaSgs~D--G~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DG---tI~IWDl~t~~~~v~~l   77 (633)
                      +|+..+.||.+  ..+..||..+++...  .+... .... +++ .-++. +.+.|+.++   .+..||..+........
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~-r~~~-~~~-~~~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~  393 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP-RCNP-AVA-SINNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPS  393 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC-Cccc-EEE-EECCE-EEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence            45556667653  357788876553321  12110 1111 112 22444 777877654   47788887655221100


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--C-CCCeEEEEEecCCCEEEEEEcC-----CeEEEE
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--Y-EAPFSSLAFIDDDWILTAGTSN-----GRVVFY  149 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h-~~~ItsLafSPdG~~LatGs~D-----GsV~IW  149 (633)
                      ......-.+++ .-++++.+.|+   .+.+||.++++-...-.  . ......+.  -+|++.++|+.+     ..|.+|
T Consensus       394 m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Y  467 (480)
T PHA02790        394 TYYPHYKSCAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVY  467 (480)
T ss_pred             CCCccccceEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEE
Confidence            01111111222 12466566653   47789998765443221  1 11222222  257777888754     357778


Q ss_pred             ECCCC
Q 006743          150 DIRGK  154 (633)
Q Consensus       150 Dlrs~  154 (633)
                      |..+.
T Consensus       468 d~~~~  472 (480)
T PHA02790        468 NNRTY  472 (480)
T ss_pred             ECCCC
Confidence            77765

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=82.34  E-value=79  Score=34.27  Aligned_cols=90  Identities=16%  Similarity=0.060  Sum_probs=66.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC--------------------C
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN--------------------G  144 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D--------------------G  144 (633)
                      .+..|. ++++.++=+..|.|..+|..+|+........+....++|.  |.++++|-..                    .
T Consensus       206 hSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~C  282 (335)
T TIGR03032       206 HSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGC  282 (335)
T ss_pred             cCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcc
Confidence            344555 7888889899999999999988877777777889999998  8888877541                    2


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006743          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA  178 (633)
Q Consensus       145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPd  178 (633)
                      -|.+.|++++ ..+..++..+--..+..+++-|.
T Consensus       283 Gv~vidl~tG-~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       283 GVAVIDLNSG-DVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             cEEEEECCCC-CEEEEEEeCCceeEEEEEEEecC
Confidence            2667777777 44555665555566677777664

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.28  E-value=7  Score=39.73  Aligned_cols=65  Identities=20%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             ccCCCeEEEEEeCCCeEEEEECCCCCceeEE------ec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 006743           46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW------LK-------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS  112 (633)
Q Consensus        46 Spdg~~lLaSGs~DGtI~IWDl~t~~~~v~~------l~-------~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt  112 (633)
                      ..++. ++++...+|.+++||+.+.+.....      +.       .....|..+.++.+|.-|++-+ +|..+.||..-
T Consensus        19 ~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   19 ECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            34455 7888899999999999887643221      11       2445566677776666555544 35566766543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.60  E-value=18  Score=41.34  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=65.8

Q ss_pred             EEEEeCCCeEEEEECCCCCceeEEecc---------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-
Q 006743           53 LVTAGDDGTLHLWDTTGRSPKVSWLKQ---------------------HSAPTAGISFSSDDKIIASVGLDKKLYTYDP-  110 (633)
Q Consensus        53 LaSGs~DGtI~IWDl~t~~~~v~~l~~---------------------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl-  110 (633)
                      ++.+..| .++.||-+.....+..+++                     -.-.|..+..++.|..++-.+-+|.+.++=. 
T Consensus        55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~  133 (741)
T KOG4460|consen   55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPK  133 (741)
T ss_pred             hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchh
Confidence            3444444 7788877655544333331                     1124677888999999999999996655432 


Q ss_pred             --------CCCceeeEe---e---------CCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCCC
Q 006743          111 --------GSRRPSSCI---T---------YEAPFSSLAFIDDD---WILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus       111 --------rtgk~v~~i---~---------h~~~ItsLafSPdG---~~LatGs~DGsV~IWDlrs~~  155 (633)
                              ++++.+...   .         ..-.+..++|+|+.   ..|+.-..|..|++||+....
T Consensus       134 rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  134 RWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             hcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence                    344433221   1         11235678999974   678888899999999998753

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.52  E-value=20  Score=40.87  Aligned_cols=133  Identities=16%  Similarity=0.155  Sum_probs=81.2

Q ss_pred             ccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEeCCC-Cceee
Q 006743           46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-------IIASVGLDKKLYTYDPGS-RRPSS  117 (633)
Q Consensus        46 Spdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~-------~LaSgS~DGtVrIWDlrt-gk~v~  117 (633)
                      ..+..-++..|+....++-.|++.++. +..+..|...  -+.|.|+.+       .-++|-.+..|.-.|.|- +..+.
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkv-veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKV-VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCcceEEecCCCcccceeeeccccee-eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            334443455566777888888888773 5666666554  466776422       223444555666678774 33333


Q ss_pred             EeeCC-----CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          118 CITYE-----APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       118 ~i~h~-----~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      .....     ....|..-. ..-+||+++..|-|++||--... ....+  ++-...|..|....+|+++++.
T Consensus       553 v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~r-AKtal--P~lG~aIk~idvta~Gk~ilaT  621 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKR-AKTAL--PGLGDAIKHIDVTANGKHILAT  621 (776)
T ss_pred             eeeehhccccccccccccc-cCceEEEecCCCceeeehhhcch-hhhcC--cccccceeeeEeecCCcEEEEe
Confidence            32222     223333222 35689999999999999965431 11222  3567889999999999887654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=81.39  E-value=5.3  Score=30.35  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             CCeEEEEEcC-CC--CEEEEEeCCCeEEEEeCCC
Q 006743           82 APTAGISFSS-DD--KIIASVGLDKKLYTYDPGS  112 (633)
Q Consensus        82 ~~VtsLafSP-dg--~~LaSgS~DGtVrIWDlrt  112 (633)
                      +.|.++.|+| .+  .+|+..-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998 44  5888888888999999995

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=81.38  E-value=82  Score=35.39  Aligned_cols=108  Identities=11%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             cCCCeEEEEEeCCCeEEEEECCCCCce---eEEeccCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEeCCC--Cc---
Q 006743           47 RNSRHLLVTAGDDGTLHLWDTTGRSPK---VSWLKQHSAPTAGISFSS----DDKIIASVGLDKKLYTYDPGS--RR---  114 (633)
Q Consensus        47 pdg~~lLaSGs~DGtI~IWDl~t~~~~---v~~l~~H~~~VtsLafSP----dg~~LaSgS~DGtVrIWDlrt--gk---  114 (633)
                      +++...|+.|+..|.++||+.......   +..-..-..+|..++.-.    .....++.=.-+.+.||.+..  +.   
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence            445558999999999999998544311   222234457888887642    233344445667788888732  11   


Q ss_pred             --ee---eEee--CCCCeEEEEEecC-----CCEEEEEEcCCeEEEEECCCC
Q 006743          115 --PS---SCIT--YEAPFSSLAFIDD-----DWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       115 --~v---~~i~--h~~~ItsLafSPd-----G~~LatGs~DGsV~IWDlrs~  154 (633)
                        ..   ....  .......+++-|-     -.+|.+-+-||.+.+|+-+..
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~  165 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF  165 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence              11   1112  2344455555552     367888999999999997764

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=80.85  E-value=83  Score=33.55  Aligned_cols=40  Identities=13%  Similarity=0.117  Sum_probs=20.1

Q ss_pred             CeEEEEECCCCCceeEEecc--CC-CCeEEEEEcCCCCEEEEEeCC
Q 006743           60 GTLHLWDTTGRSPKVSWLKQ--HS-APTAGISFSSDDKIIASVGLD  102 (633)
Q Consensus        60 GtI~IWDl~t~~~~v~~l~~--H~-~~VtsLafSPdg~~LaSgS~D  102 (633)
                      ..|.+||..+.+..  .+..  .. ..-.+++. -++++++.|+.+
T Consensus       168 ~~v~~YDp~t~~W~--~~~~~p~~~r~~~~~~~-~~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWR--NLGENPFLGTAGSAIVH-KGNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCcee--ECccCCCCcCCCceEEE-ECCEEEEEeeee
Confidence            46889998776532  1111  11 11122222 257777777753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	633
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 24  ASGAKAAELKDPNEQVLRVL-DYSRNSRHL--------LVTAGDDGTLHLWDTTGRSPKV 74
           AS  K  +L + N Q+L+ L  +S + R +        + +A DD T+ LW+  G+  + 
Sbjct: 362 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 421
Query: 75  SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
             L  HS+   G++FS DD+ IAS   DK +  ++   +   +   + +    +AF  D 
Sbjct: 422 --LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 479
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
             + + + +  V  ++  G  Q L  L   SSS
Sbjct: 480 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 510

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	633
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.91
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.89
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.88
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.88
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.88
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.87
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.87
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.86
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.86
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.85
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.85
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.85
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.84
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.78
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.73
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.72
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.71
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.7
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.69
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.68
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.66
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.66
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.65
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.63
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.58
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.57
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.57
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.56
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.55
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.55
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.53
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.53
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.53
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.52
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.51
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.5
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.5
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.5
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.5
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.5
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.48
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.37
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.36
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.34
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.32
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.31
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.3
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.29
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.29
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.27
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.25
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.24
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.23
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.23
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.2
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.19
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.18
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.17
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.16
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.16
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.14
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.13
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.11
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.09
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.07
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.04
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.02
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.99
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.98
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.97
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.97
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.86
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.86
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.84
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.83
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.82
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.78
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.77
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.74
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.73
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.71
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.7
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.6
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.6
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.53
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.53
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.46
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.41
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.4
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.39
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.38
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.38
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.32
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.31
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.29
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.29
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.25
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.21
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.15
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.14
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.01
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.96
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.96
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.94
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.94
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.9
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.88
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.87
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.85
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.81
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.79
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.74
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.71
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.65
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.52
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.52
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.52
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.47
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.45
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.43
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.43
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.39
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.36
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.35
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.33
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.31
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.3
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.18
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.17
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.15
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.15
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.14
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.05
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.04
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.96
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.88
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.82
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.8
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.79
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.71
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.59
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.54
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.34
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.2
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.16
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.98
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.8
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.78
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.77
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.74
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.54
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.44
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.35
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.34
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.24
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.91
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.5
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.44
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.33
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.32
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.27
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.1
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.98
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.76
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.73
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.39
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.37
3ott_A	758	Two-component system sensor histidine kinase; beta	93.22
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.91
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.83
3ott_A	758	Two-component system sensor histidine kinase; beta	92.12
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.09
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.54
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.32
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.03
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.76
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.6
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.72
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	88.81
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.44
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	86.52
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	85.84
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	85.84

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=4.5e-28  Score=255.41  Aligned_cols=193  Identities=11%  Similarity=0.115  Sum_probs=164.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe--c
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL--K   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l--~   78 (633)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|++++..+|++|+.|++|+|||+++.+.. ..+  .
T Consensus       134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~  211 (344)
T 4gqb_B          134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-SQIGCS  211 (344)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-EECC--
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCCceeeecccccccccccccccee-eeeecc
Confidence            4899999999999999999999999999999986 66788999999998778999999999999999988753 333  3


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCC
Q 006743           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~  155 (633)
                      .|...+.+++|+| ++++|++|+.|++|++||+++++++..+ .|...|.+++|+|++ ++|++|+.||+|+|||++++ 
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-  290 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-  290 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-
Confidence            4566899999999 6788999999999999999999988777 589999999999998 57999999999999999887 


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                         ..+...+|.+.|++++|+|+++           .++++++.|+.|++|++..
T Consensus       291 ---~~~~~~~H~~~V~~v~~sp~~~-----------~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          291 ---ELFRSQAHRDFVRDATWSPLNH-----------SLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             ---EEEEECCCSSCEEEEEECSSST-----------TEEEEEETTSCEEEEECCC
T ss_pred             ---cEEEEcCCCCCEEEEEEeCCCC-----------eEEEEEcCCCeEEEEECCC
Confidence               2334458999999999999643           3455678899999999853

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=1.9e-27  Score=243.75  Aligned_cols=197  Identities=14%  Similarity=0.228  Sum_probs=171.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|++++++|++|+.|+.|++||+.+++.+..+.+ |...|.+++|+|++. +|++|+.|++|+|||+++.......+.+|
T Consensus        62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h  139 (304)
T 2ynn_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (304)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred             EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC-CCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence            4789999999999999999999999999999986 667889999999998 89999999999999998876566778999


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEec--CCCEEEEEEcCCeEEEEECCCCC
Q 006743           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFID--DDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSP--dG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      ...|.+++|+| ++.+|++|+.|++|++||++++.....+  .+...+..++|+|  ++.+|++|+.||.|++||+++. 
T Consensus       140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-  218 (304)
T 2ynn_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-  218 (304)
T ss_dssp             CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-
Confidence            99999999999 7899999999999999999887765554  4667899999987  6789999999999999999987 


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      +++..+.  +|...|.+++|+|+++            ++++++.|+.|++||+......
T Consensus       219 ~~~~~~~--~h~~~v~~~~~~p~~~------------~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          219 SCVATLE--GHMSNVSFAVFHPTLP------------IIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             EEEEEEE--CCSSCEEEEEECSSSS------------EEEEEETTSCEEEEETTTCCEE
T ss_pred             ccceeeC--CCCCCEEEEEECCCCC------------EEEEEcCCCeEEEEECCCCcee
Confidence            4455555  8999999999999544            5566688999999998765543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=2.9e-27  Score=242.30  Aligned_cols=196  Identities=12%  Similarity=0.125  Sum_probs=170.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|++||+.+++.+..+.. +...|.+++|+++++ +|++|+.|++|+|||+.+++. +..+.+|
T Consensus        20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~-~~~~~~h   96 (304)
T 2ynn_A           20 DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEK-VVDFEAH   96 (304)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCE-EEEEECC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCCcE-EEEEeCC
Confidence            5899999999999999999999999999988886 567789999999998 899999999999999998874 6778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eEe-eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~i-~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      ...|++++|+|++++|++|+.|++|++||++++... ..+ .|...|.+++|+| ++.+|++|+.||.|++||++.....
T Consensus        97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~  176 (304)
T 2ynn_A           97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (304)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            999999999999999999999999999999987443 444 6899999999999 6799999999999999999887544


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      .....  .|...|..++|.|.          .++.++++++.|+.|++||++..
T Consensus       177 ~~~~~--~~~~~v~~~~~~~~----------~~~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          177 FTLTT--GQERGVNYVDYYPL----------PDKPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             EEEEC--CCTTCEEEEEECCS----------TTCCEEEEEETTSEEEEEETTTT
T ss_pred             ceecc--CCcCcEEEEEEEEc----------CCCCEEEEEcCCCeEEEEeCCCC
Confidence            33333  57788999999873          25567788899999999998653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=2.6e-27  Score=245.81  Aligned_cols=190  Identities=17%  Similarity=0.277  Sum_probs=170.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|++||+.+++....+.. +...|.+++|+|+++ +|++|+.||.|+|||+++++. +..+.+|
T Consensus       129 ~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~-~~~~~~h  205 (321)
T 3ow8_A          129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-RGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKL-LHTLEGH  205 (321)
T ss_dssp             EECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-SSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCC
T ss_pred             EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-CCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcE-EEEEccc
Confidence            4899999999999999999999999998888875 566788999999998 899999999999999998774 6778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...|++++|+|++++|++++.|+.|++||+++++....+ .|...|.+++|+|++.+|++++.||.|+|||+++. +++.
T Consensus       206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~  284 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVH  284 (321)
T ss_dssp             SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEE
Confidence            999999999999999999999999999999998887776 58999999999999999999999999999999987 3444


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .+.  +|...|.+++|+|+++            +|++++.|+.|++||.
T Consensus       285 ~~~--~h~~~v~~v~~s~~g~------------~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          285 TFF--DHQDQVWGVKYNGNGS------------KIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEC--CCSSCEEEEEECTTSS------------EEEEEETTCCEEEEEC
T ss_pred             EEc--CCCCcEEEEEECCCCC------------EEEEEeCCCeEEEEeC
Confidence            444  7999999999999544            4555678999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=6e-27  Score=241.97  Aligned_cols=201  Identities=15%  Similarity=0.261  Sum_probs=173.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+++|++|++|+.|+.|+|||+.+++.+..+.+ |...|.+++|+|++. +|++|+.|++|+|||++...  +..+.+|
T Consensus        72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~--~~~~~~h  147 (319)
T 3frx_A           72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQC--LATLLGH  147 (319)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCE--EEEECCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe--EEEEecc
Confidence            4889999999999999999999999999999987 667789999999988 89999999999999997654  6778899


Q ss_pred             CCCeEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           81 SAPTAGISFSSD------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        81 ~~~VtsLafSPd------g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      ...|.+++|.|.      +.+|++++.|+.|++||+++.+....+ .|...|.+++|+|++++|++|+.||.|+|||+++
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999984      458999999999999999998877665 6999999999999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEec-------------------------------------cCCCCeEEEE
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET-------------------------------------TCKAETALLG  196 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s-------------------------------------~~sd~~lLlS  196 (633)
                      . +++..+.   +...|.+++|+|++.+++++.                                     +..++.+|++
T Consensus       228 ~-~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  303 (319)
T 3frx_A          228 K-KAMYTLS---AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA  303 (319)
T ss_dssp             T-EEEEEEE---CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred             C-cEEEEec---CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence            7 3344443   457899999999988876542                                     2346677788


Q ss_pred             eeCCCeEEccCCC
Q 006743          197 GAVGDSILMPDPL  209 (633)
Q Consensus       197 gs~Dg~IkIWDlr  209 (633)
                      ++.|+.|++||+.
T Consensus       304 g~~Dg~i~vWd~~  316 (319)
T 3frx_A          304 GYTDNVIRVWQVM  316 (319)
T ss_dssp             EETTSCEEEEEEE
T ss_pred             eecCceEEEEEEe
Confidence            8888888888763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=5.8e-27  Score=246.97  Aligned_cols=193  Identities=18%  Similarity=0.212  Sum_probs=162.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEe---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~---~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|++++ +|++|+.||.|+|||+.+++.+..+.   ..|...|.+|+|+|+++ +|++|+.|++|+|||+.+++. +..+
T Consensus        89 ~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~-~~~~  165 (344)
T 4gqb_B           89 TWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVV-LSSY  165 (344)
T ss_dssp             EEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEE
T ss_pred             EEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcE-EEEE
Confidence            478874 78899999999999999887654432   24778899999999998 899999999999999998874 6788


Q ss_pred             ccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECC
Q 006743           78 KQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlr  152 (633)
                      .+|...|++++|++++ .+|++++.|++|++||++++++...+   .+...+.+++|+|+ +++|++|+.||.|+|||++
T Consensus       166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            9999999999999976 58899999999999999999888766   35667999999995 6788999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +. +++..+.  +|...|++++|+|++           ..+|++++.|+.|+|||+..
T Consensus       246 ~~-~~~~~~~--~h~~~v~~v~fsp~g-----------~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          246 ST-SCVLSSA--VHSQCVTGLVFSPHS-----------VPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             C---CCEEEE--CCSSCEEEEEECSSS-----------SCCEEEEETTSCEEEECTTC
T ss_pred             CC-cEEEEEc--CCCCCEEEEEEccCC-----------CeEEEEEeCCCeEEEEECCC
Confidence            87 4555565  899999999999964           23456668899999999854

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=4.8e-27  Score=251.67  Aligned_cols=205  Identities=16%  Similarity=0.216  Sum_probs=177.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|++++|++|+.||.|+|||+.+++....+.+ |...|.+++|+|++. +|++|+.|++|+|||+.+.+. +..+.+|
T Consensus       115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~-~~~~~~h  191 (410)
T 1vyh_C          115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC-IRTMHGH  191 (410)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE-EECCCCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-eEEEcCC
Confidence            4899999999999999999999999999999886 667789999999998 899999999999999988774 6778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...|.+++|+|++++|++|+.|++|++||++++.++..+ .|...|.+++|+|++.+|++|+.||.|++||+++.. ...
T Consensus       192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~  270 (410)
T 1vyh_C          192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKA  270 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eee
Confidence            999999999999999999999999999999999988777 588999999999999999999999999999999873 334


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEec--------cCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDET--------TCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s--------~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      .+.  +|...|.+++|+|++.+.....        ....+.++++++.|+.|++||++..
T Consensus       271 ~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          271 ELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  328 (410)
T ss_dssp             EEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             Eec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            444  7999999999999754422110        1123678999999999999999653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=1.1e-26  Score=248.91  Aligned_cols=191  Identities=14%  Similarity=0.248  Sum_probs=169.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.|+.|++||+.++..+..+.+ |...|.+++|++++. +|++|+.|+.|++||+.+... ...+..|
T Consensus       199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~-~~~~~~h  275 (410)
T 1vyh_C          199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKEC-KAELREH  275 (410)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EEEECCC
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCce-eeEecCC
Confidence            4889999999999999999999999999999986 667789999999998 899999999999999988774 5678899


Q ss_pred             CCCeEEEEEcCC--------------------CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEE
Q 006743           81 SAPTAGISFSSD--------------------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        81 ~~~VtsLafSPd--------------------g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~Lat  139 (633)
                      ...|.+++|+|+                    +.+|++|+.|+.|++||+++++++..+ .|...|.+++|+|++.+|++
T Consensus       276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  355 (410)
T 1vyh_C          276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS  355 (410)
T ss_dssp             SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEE
Confidence            999999999995                    679999999999999999999888776 68999999999999999999


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |+.||.|++||+++. +++..+.  +|...|++++|+|++++            +++++.|+.|++||+|
T Consensus       356 ~s~D~~i~vwd~~~~-~~~~~~~--~h~~~v~~l~~~~~~~~------------l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          356 CADDKTLRVWDYKNK-RCMKTLN--AHEHFVTSLDFHKTAPY------------VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EETTTEEEEECCTTS-CCCEEEE--CCSSCEEEEEECSSSSC------------EEEEETTSEEEEEC--
T ss_pred             EeCCCeEEEEECCCC-ceEEEEc--CCCCcEEEEEEcCCCCE------------EEEEeCCCcEEEEeCC
Confidence            999999999999876 4456665  79999999999996554            4556789999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=1.3e-26  Score=241.09  Aligned_cols=187  Identities=16%  Similarity=0.198  Sum_probs=163.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |++++ .+++++.|+.|++||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.|+.|++||+++... ...+.+|.
T Consensus       151 ~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~  226 (340)
T 1got_B          151 FLDDN-QIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMC-RQTFTGHE  226 (340)
T ss_dssp             EEETT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSE-EEEECCCS
T ss_pred             ECCCC-cEEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCee-EEEEcCCc
Confidence            45554 588999999999999999999988886 667788999999997 899999999999999988774 67788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ..|++++|+|++++|++|+.|++|++||+++++.+..+.+.   ..|.+++|+|+|.+|++|+.||.|++||+.+.. .+
T Consensus       227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~  305 (340)
T 1got_B          227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RA  305 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EE
T ss_pred             CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc-Ee
Confidence            99999999999999999999999999999998887776543   479999999999999999999999999998873 44


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      ..+.  +|.+.|.+++|+|++.+            |++++.|+.|++||
T Consensus       306 ~~~~--~h~~~v~~~~~s~dg~~------------l~s~s~D~~i~iWd  340 (340)
T 1got_B          306 GVLA--GHDNRVSCLGVTDDGMA------------VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEE--CCSSCEEEEEECTTSSC------------EEEEETTSCEEEEC
T ss_pred             eEee--cCCCcEEEEEEcCCCCE------------EEEEcCCccEEecC
Confidence            5555  89999999999996555            45557799999997

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=3.2e-26  Score=233.11  Aligned_cols=195  Identities=20%  Similarity=0.271  Sum_probs=170.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|++|++.+++....+.+ |...|.+++|+|+++ +|++|+.|+.|++||+.+.+. +..+.+|
T Consensus        30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~-~~~~~~~  106 (312)
T 4ery_A           30 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKC-LKTLKGH  106 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE-EEEEECC
T ss_pred             EECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCC-EEEEECCCCEEEEEECCCCcE-EEEEcCC
Confidence            4899999999999999999999999998888876 667789999999997 899999999999999998874 6778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...|.+++|+|++++|++|+.|+.|++||+++++.+..+ .|...|.+++|+|++.+|++++.||.|++||+++... +.
T Consensus       107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~  185 (312)
T 4ery_A          107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LK  185 (312)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-ee
Confidence            999999999999999999999999999999999888777 5888999999999999999999999999999998743 33


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .+. ..+...+.+++|+|++++            +++++.|+.|++||++...
T Consensus       186 ~~~-~~~~~~~~~~~~~~~~~~------------l~~~~~d~~i~iwd~~~~~  225 (312)
T 4ery_A          186 TLI-DDDNPPVSFVKFSPNGKY------------ILAATLDNTLKLWDYSKGK  225 (312)
T ss_dssp             EEC-CSSCCCEEEEEECTTSSE------------EEEEETTTEEEEEETTTTE
T ss_pred             EEe-ccCCCceEEEEECCCCCE------------EEEEcCCCeEEEEECCCCc
Confidence            332 256778999999996554            4555779999999986543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=242.86  Aligned_cols=195  Identities=13%  Similarity=0.189  Sum_probs=163.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-~v~~l   77 (633)
                      +|+|+|++||+|+.|+.|+|||+.++....  .+...|...|.+++|+|+++ +|++|+.|++|+|||+..... .+..+
T Consensus        23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D~~v~iw~~~~~~~~~~~~~  101 (345)
T 3fm0_A           23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATTCIWKKNQDDFECVTTL  101 (345)
T ss_dssp             EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-EEEEEECCCcEEEEEccCCCeEEEEEc
Confidence            589999999999999999999998876443  23345778899999999998 899999999999999977642 35678


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~---v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      .+|...|.+++|+|++++|++|+.|++|++||++++..   +..+ .|...|.+++|+|++.+|++|+.|+.|++||.+.
T Consensus       102 ~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET
T ss_pred             cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC
Confidence            89999999999999999999999999999999987643   3333 5889999999999999999999999999999987


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .. ........+|...|++++|+|++++            |++++.|+.|++||+.
T Consensus       182 ~~-~~~~~~~~~h~~~v~~l~~sp~g~~------------l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          182 DD-WVCCATLEGHESTVWSLAFDPSGQR------------LASCSDDRTVRIWRQY  224 (345)
T ss_dssp             TE-EEEEEEECCCSSCEEEEEECTTSSE------------EEEEETTSCEEEEEEE
T ss_pred             CC-EEEEEEecCCCCceEEEEECCCCCE------------EEEEeCCCeEEEeccc
Confidence            53 2222333489999999999996544            5556789999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=8.9e-27  Score=245.35  Aligned_cols=194  Identities=12%  Similarity=0.156  Sum_probs=167.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-EEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v-~~l~~   79 (633)
                      +|+|+|++|++|+.||.|++||+.+++.+..+.+ |...|.+++|+++++.++++++.||.|+|||+++.+... .....
T Consensus       146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~  224 (357)
T 4g56_B          146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA  224 (357)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc
Confidence            4899999999999999999999999999999986 667889999999987789999999999999998876432 22346


Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCC
Q 006743           80 HSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        80 H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      |...|.+++|+|+ +.+|++|+.|+.|++||+++++++..+ .|...|.+++|+|++ ++|++|+.||+|+|||++++  
T Consensus       225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--  302 (357)
T 4g56_B          225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--  302 (357)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC--
T ss_pred             ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC--
Confidence            7788999999995 678999999999999999999888777 588999999999987 67899999999999999887  


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                        +.+...+|.+.|++++|+|.           ++.+|++++.|+.|++||+..
T Consensus       303 --~~~~~~~H~~~V~~vafsP~-----------d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          303 --EVFRDLSHRDFVTGVAWSPL-----------DHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             --EEEEECCCSSCEEEEEECSS-----------STTEEEEEETTSCEEEEECC-
T ss_pred             --cEeEECCCCCCEEEEEEeCC-----------CCCEEEEEcCCCeEEEEECCC
Confidence              33444589999999999983           345566778899999999854

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=2.1e-26  Score=239.11  Aligned_cols=194  Identities=18%  Similarity=0.232  Sum_probs=170.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|++++.++++++.|+.|++||+.+++.+..+.. +...+.+++|+|+++ +|++|+.||.|++||+...+. ...+..|
T Consensus        87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~-~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~-~~~~~~~  163 (321)
T 3ow8_A           87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKK-EYSLDTR  163 (321)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSE-EEEEECS
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC-CCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCce-eEEecCC
Confidence            3788999999999999999999999999988886 445567799999998 899999999999999998874 5667788


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...|.+++|+|++++|++|+.|+.|++||+++++.+..+ .|...|.+++|+|++.+|++|+.||.|+|||++... ...
T Consensus       164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-~~~  242 (321)
T 3ow8_A          164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-LAG  242 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-EEE
T ss_pred             CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-eeE
Confidence            999999999999999999999999999999999988777 588999999999999999999999999999999873 344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .+.  +|...|.+++|+|+++            +|++++.|+.|++||++...
T Consensus       243 ~~~--~h~~~v~~~~~sp~~~------------~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          243 TLS--GHASWVLNVAFCPDDT------------HFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             EEC--CCSSCEEEEEECTTSS------------EEEEEETTSCEEEEETTTTE
T ss_pred             EEc--CCCCceEEEEECCCCC------------EEEEEeCCCcEEEEeCCCCE
Confidence            444  8999999999999544            45566789999999997543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=4.6e-26  Score=237.04  Aligned_cols=193  Identities=15%  Similarity=0.216  Sum_probs=168.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---~~v~~l   77 (633)
                      +|++++++|++|+.||.|+|||+.+++.+..+.. +...|.+++|+|+++ +|++|+.|+.|++||+.+..   .....+
T Consensus        62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~  139 (340)
T 1got_B           62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSREL  139 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTCSBSCEEEEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCC-EEEEEeCCCeEEEEECccCCCcceeEEEe
Confidence            4899999999999999999999999999988886 567788999999998 89999999999999997654   234567


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      .+|...|.++.|++++. +++++.|++|++||+++++.+..+ .|...|.+++|+|++.+|++|+.||.|++||+++. .
T Consensus       140 ~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~  217 (340)
T 1got_B          140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-M  217 (340)
T ss_dssp             ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-S
T ss_pred             cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-e
Confidence            89999999999998764 899999999999999999888777 58999999999999999999999999999999987 3


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +...+.  +|...|.+++|+|+++            ++++++.|+.|++||++..
T Consensus       218 ~~~~~~--~h~~~v~~v~~~p~~~------------~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          218 CRQTFT--GHESDINAICFFPNGN------------AFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEEEEC--CCSSCEEEEEECTTSS------------EEEEEETTSCEEEEETTTT
T ss_pred             eEEEEc--CCcCCEEEEEEcCCCC------------EEEEEcCCCcEEEEECCCC
Confidence            444444  7999999999999654            4556678999999999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=6.3e-26  Score=238.31  Aligned_cols=190  Identities=18%  Similarity=0.222  Sum_probs=165.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg-~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|++++++|++++.||.|++||+++++.+..+.+ |...|.+++|+|+. .++|++|+.||.|++||+++++. +..+..
T Consensus       161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~  238 (354)
T 2pbi_B          161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFET  238 (354)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECC
T ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecC
Confidence            4789999999999999999999999999999987 56678889998852 24899999999999999998874 677889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h---~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      |...|++++|+|++++|++|+.|++|++||++.++.+..+..   ...+.+++|+|++.+|++|+.|+.|++||+.++. 
T Consensus       239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-  317 (354)
T 2pbi_B          239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-  317 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-
T ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-
Confidence            999999999999999999999999999999999887766642   3478999999999999999999999999998873 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      .+..+.  +|...|++++|+|++++|            ++++.|+.|++|+
T Consensus       318 ~~~~l~--~h~~~v~~l~~spdg~~l------------~sgs~D~~v~vW~  354 (354)
T 2pbi_B          318 RVSILF--GHENRVSTLRVSPDGTAF------------CSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEC--CCSSCEEEEEECTTSSCE------------EEEETTSEEEEEC
T ss_pred             eEEEEE--CCCCcEEEEEECCCCCEE------------EEEcCCCCEEecC
Confidence            344444  899999999999966554            5557799999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=5.2e-26  Score=232.23  Aligned_cols=199  Identities=11%  Similarity=0.169  Sum_probs=163.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC--ceeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tg--k~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~-~~v~   75 (633)
                      +|+++|++||+|+.|+.|+|||+...  +.+..+.+ |...|.+++|+++  +. +|++|+.|++|+|||+.++. ..+.
T Consensus        16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iWd~~~~~~~~~~   93 (297)
T 2pm7_B           16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGT-ILASCSYDGKVMIWKEENGRWSQIA   93 (297)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCS-EEEEEETTTEEEEEEBSSSCBCCCE
T ss_pred             EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCC-EEEEEcCCCEEEEEEcCCCceEEEE
Confidence            58999999999999999999999743  56777776 6778999999864  55 89999999999999998764 2355


Q ss_pred             EeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCce---eeEeeCCCCeEEEEEecC-------------CCEE
Q 006743           76 WLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDD-------------DWIL  137 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~---v~~i~h~~~ItsLafSPd-------------G~~L  137 (633)
                      .+..|...|.+++|+|+  +.+|++++.|+.|++||++++..   .....|...|.+++|+|+             +++|
T Consensus        94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l  173 (297)
T 2pm7_B           94 VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (297)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred             EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence            67889999999999996  89999999999999999987632   223368999999999997             5799


Q ss_pred             EEEEcCCeEEEEECCCCCCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~-l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ++|+.|+.|+|||+++....... ....+|...|.+++|+|++         ..+.++++++.|+.|++||+..
T Consensus       174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~---------~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------LLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------SSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC---------CCceEEEEEECCCcEEEEEeCC
Confidence            99999999999999876432211 2233899999999999953         1246778889999999999854

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=2.9e-26  Score=246.52  Aligned_cols=199  Identities=13%  Similarity=0.112  Sum_probs=160.1

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEEe-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~-~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+| ++++||+|+.||.|+|||+.+++....+. ..|...|.+|+|+|.+.++|++|+.||+|+|||+++...  ..+.
T Consensus       126 ~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~  203 (435)
T 4e54_B          126 AWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL--RVFA  203 (435)
T ss_dssp             EECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE--EEEE
T ss_pred             EEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce--eEEe
Confidence            5888 56799999999999999998776555443 236778999999985444899999999999999987652  2222


Q ss_pred             ---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCC
Q 006743           79 ---QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        79 ---~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~-~LatGs~DGsV~IWDlrs~  154 (633)
                         .+...+.+++|+|++++|++|+.||.|++||++.........|...|.+++|+|++. +|++|+.|+.|+|||+++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~  283 (435)
T 4e54_B          204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV  283 (435)
T ss_dssp             CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred             ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence               334568899999999999999999999999998655444457999999999999875 7889999999999999986


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ..........+|...|++++|+|++.            +|++++.|+.|++||++....
T Consensus       284 ~~~~~~~~~~~h~~~v~~~~~spdg~------------~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          284 RGKASFLYSLPHRHPVNAACFSPDGA------------RLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             CSSSCCSBCCBCSSCEEECCBCTTSS------------EEEEEESSSCEEEEESSSSSS
T ss_pred             cccceEEEeeeccccccceeECCCCC------------eeEEEcCCCEEEEEECCCCcc
Confidence            54434444457999999999999654            455567899999999976544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=2.4e-26  Score=243.09  Aligned_cols=196  Identities=14%  Similarity=0.188  Sum_probs=168.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------cee
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKV   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~------~~v   74 (633)
                      +|+|+|++|++|+.||+|+|||+.+++....+.. |...|.+++|+|+++ +|++|+.|+.|+|||+....      ...
T Consensus        73 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~-~las~~~d~~v~iw~~~~~~~~~~~~~~~  150 (380)
T 3iz6_a           73 DWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDGNMPVS  150 (380)
T ss_dssp             EECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSS-EEEECCSSSCCEEEECCCCSSCCCSSTTC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCC-EEEEeeCCCcEEEEECCCCccccCCccce
Confidence            4899999999999999999999999999998887 556678899999998 89999999999999996432      224


Q ss_pred             EEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEe------eCCCCeEEEEEec-CCCEEEEEEcCCeE
Q 006743           75 SWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI------TYEAPFSSLAFID-DDWILTAGTSNGRV  146 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i------~h~~~ItsLafSP-dG~~LatGs~DGsV  146 (633)
                      ..+.+|...|.+++|.|+ +..|++|+.|++|++||+++++.+..+      .|...|.+++|++ ++.+|++|+.||.|
T Consensus       151 ~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v  230 (380)
T 3iz6_a          151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV  230 (380)
T ss_dssp             CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCE
T ss_pred             eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeE
Confidence            567899999999999994 667999999999999999999887665      4778899999987 88999999999999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ++||++....++..+.  +|.+.|.+++|+|+++            ++++++.|+.|++||++...
T Consensus       231 ~~wd~~~~~~~~~~~~--~h~~~v~~v~~~p~~~------------~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          231 RLWDLRITSRAVRTYH--GHEGDINSVKFFPDGQ------------RFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             EEEETTTTCCCCEEEC--CCSSCCCEEEECTTSS------------EEEEECSSSCEEEEETTTTE
T ss_pred             EEEECCCCCcceEEEC--CcCCCeEEEEEecCCC------------eEEEEcCCCeEEEEECCCCc
Confidence            9999986656666666  8999999999999654            45566789999999997543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=2.1e-25  Score=237.04  Aligned_cols=195  Identities=18%  Similarity=0.280  Sum_probs=166.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC-----------------CCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPN-----------------EQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~-----------------~~~VssLafSpdg~~lLaSGs~DGtI~   63 (633)
                      +|+|||++||+|+ ++.++||++.+++.+..+..+.                 ...|.+++|+|+++ +|++|+.|+.|+
T Consensus        71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~  148 (393)
T 1erj_A           71 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIR  148 (393)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             EECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC-EEEEEcCCCeEE
Confidence            4899999999976 7899999999999888776432                 12488999999998 899999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEec-CCCEEEEEEc
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTS  142 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSP-dG~~LatGs~  142 (633)
                      |||+.+.+. +..+.+|...|++++|+|++++|++++.|++|++||++++++...+.+...+.+++|+| ++++|++|+.
T Consensus       149 iwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          149 IWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             EEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             EEECCCCcE-EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcC
Confidence            999988764 67789999999999999999999999999999999999999888888889999999999 8999999999


Q ss_pred             CCeEEEEECCCCCCceEEEe-----ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          143 NGRVVFYDIRGKPQPLTVLR-----ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       143 DGsV~IWDlrs~~k~v~~l~-----~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ||.|++||+++.. .+..+.     ..+|...|.+++|+|+++            ++++++.|+.|++||++..
T Consensus       228 d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g~------------~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          228 DRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQ------------SVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             TSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSS------------EEEEEETTSEEEEEEC---
T ss_pred             CCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEECCCCC------------EEEEEeCCCEEEEEECCCC
Confidence            9999999999873 333331     137999999999999654            4556678999999999753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=3.8e-25  Score=230.03  Aligned_cols=190  Identities=15%  Similarity=0.244  Sum_probs=157.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--   78 (633)
                      +|+|++.+|++|+.|+.|++||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.|++|++||+....  .....  
T Consensus        83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~--~~~~~~~  158 (343)
T 2xzm_R           83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGEC--KFSSAEK  158 (343)
T ss_dssp             EECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCE--EEECCTT
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCc--eeeeecc
Confidence            4789999999999999999999999999999886 667789999999998 89999999999999998443  22222  


Q ss_pred             -cCCCCeEEEEEcCCC----------CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeE
Q 006743           79 -QHSAPTAGISFSSDD----------KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRV  146 (633)
Q Consensus        79 -~H~~~VtsLafSPdg----------~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV  146 (633)
                       .|...|.+++|+|++          .+|++++.|+.|++||.. .+....+ .|...|.+++|+|+|++|++|+.||.|
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v  237 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL  237 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence             788999999999976          799999999999999954 4444444 689999999999999999999999999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ++||++....+...+.   +...|.+++|+|+++++++             +.|+.|++||+...
T Consensus       238 ~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~-------------~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          238 LIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAV-------------GTDQGVKIFNLMTQ  286 (343)
T ss_dssp             EEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEE-------------EESSCEEEEESSSC
T ss_pred             EEEECCCCcccceeec---CCCcEEEEEECCCCCEEEE-------------ECCCCEEEEEeCCC
Confidence            9999966545544443   5567999999997554432             34778888887643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=1.9e-25  Score=230.75  Aligned_cols=195  Identities=12%  Similarity=0.151  Sum_probs=163.9

Q ss_pred             CccCCC-CEEEEEECCCcEEEEECCCC-----ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743            1 MYNCKD-EHLASISLSGDLILHNLASG-----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpdG-~~LaSgs~DG~I~IWDl~tg-----k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      +|++++ ++|++|+.|+.|++||+...     ..+..+.+ |...|.+++|+++++ +|++|+.|++|+|||+.+++. +
T Consensus        24 ~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~-~l~s~s~D~~v~~wd~~~~~~-~  100 (319)
T 3frx_A           24 ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGA-YALSASWDKTLRLWDVATGET-Y  100 (319)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-E
T ss_pred             EccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCe-e
Confidence            477765 89999999999999998642     34566776 677889999999998 899999999999999998874 6


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecC------CCEEEEEEcCCeEEE
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD------DWILTAGTSNGRVVF  148 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPd------G~~LatGs~DGsV~I  148 (633)
                      ..+.+|...|.+++|+|++.+|++|+.|++|++||++.........|...|.+++|.|.      +.+|++++.|+.|++
T Consensus       101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~  180 (319)
T 3frx_A          101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA  180 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEE
T ss_pred             EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEE
Confidence            77889999999999999999999999999999999986555555579999999999985      458999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ||+++.. ....+  .+|...|.+++|+|++++            +++++.|+.|++||++....
T Consensus       181 wd~~~~~-~~~~~--~~h~~~v~~~~~sp~g~~------------l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          181 WNLNQFQ-IEADF--IGHNSNINTLTASPDGTL------------IASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             EETTTTE-EEEEE--CCCCSCEEEEEECTTSSE------------EEEEETTCEEEEEETTTTEE
T ss_pred             EECCcch-hheee--cCCCCcEEEEEEcCCCCE------------EEEEeCCCeEEEEECCCCcE
Confidence            9998763 33333  389999999999996544            55567899999999975443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=1.5e-25  Score=225.31  Aligned_cols=197  Identities=17%  Similarity=0.293  Sum_probs=160.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCC---
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRS---   71 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~~---   71 (633)
                      +|+|++++|++|+.||.|++||+.++.    ....+.+ |...|.+++|+|  ++. +|++|+.||.|+|||+....   
T Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~   95 (351)
T 3f3f_A           18 VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEEC   95 (351)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTT
T ss_pred             EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccc
Confidence            489999999999999999999998763    4555665 677899999999  466 89999999999999998763   


Q ss_pred             -----ceeEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCce-----------------------------
Q 006743           72 -----PKVSWLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRP-----------------------------  115 (633)
Q Consensus        72 -----~~v~~l~~H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~-----------------------------  115 (633)
                           ..+..+..|...|.+++|+|+  +++|++++.|+.|++||+++++.                             
T Consensus        96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (351)
T 3f3f_A           96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW  175 (351)
T ss_dssp             SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred             cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence                 236677899999999999998  99999999999999999876542                             


Q ss_pred             -------------------------------eeEe-eCCCCeEEEEEecCC----CEEEEEEcCCeEEEEECCCCCCc--
Q 006743          116 -------------------------------SSCI-TYEAPFSSLAFIDDD----WILTAGTSNGRVVFYDIRGKPQP--  157 (633)
Q Consensus       116 -------------------------------v~~i-~h~~~ItsLafSPdG----~~LatGs~DGsV~IWDlrs~~k~--  157 (633)
                                                     +..+ .|...|.+++|+|++    ++|++|+.||.|++||++.....  
T Consensus       176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  255 (351)
T 3f3f_A          176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA  255 (351)
T ss_dssp             CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred             ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence                                           1111 377899999999998    89999999999999999864210  


Q ss_pred             -----------------------------------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743          158 -----------------------------------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG  196 (633)
Q Consensus       158 -----------------------------------------v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlS  196 (633)
                                                               .......+|...|++++|+|++++            |++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~------------l~s  323 (351)
T 3f3f_A          256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI------------LSS  323 (351)
T ss_dssp             -----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC------------EEE
T ss_pred             cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE------------EEE
Confidence                                                     112222379999999999996554            455


Q ss_pred             eeCCCeEEccCCCCC
Q 006743          197 GAVGDSILMPDPLPS  211 (633)
Q Consensus       197 gs~Dg~IkIWDlr~~  211 (633)
                      ++.|+.|++||+...
T Consensus       324 ~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          324 AGDDGKVRLWKATYS  338 (351)
T ss_dssp             EETTSCEEEEEECTT
T ss_pred             ecCCCcEEEEecCcC
Confidence            577999999998653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=3.2e-25  Score=235.54  Aligned_cols=196  Identities=17%  Similarity=0.210  Sum_probs=163.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.|++|++||+++++. ... ..+
T Consensus       130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~-~~~-~~~  205 (393)
T 1erj_A          130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQC-SLT-LSI  205 (393)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-EEE-EEC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCee-EEE-EEc
Confidence            4899999999999999999999999998888876 667789999999998 899999999999999998774 233 346


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe--------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i--------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      ...|.+++|+| ++++|++|+.|+.|++||+++++.+..+        .|...|.+++|+|++++|++|+.||.|++||+
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            67899999999 9999999999999999999998876654        47889999999999999999999999999999


Q ss_pred             CCCCCc---------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          152 RGKPQP---------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       152 rs~~k~---------v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ++....         .......+|...|.+++|+|++.            ++++++.|+.|++||+....
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------------~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE------------YILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGC------------EEEEEETTSEEEEEETTTCC
T ss_pred             CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC------------EEEEEeCCCeEEEEECCCCe
Confidence            864211         11223348999999999999544            55566889999999986543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=1.2e-24  Score=227.33  Aligned_cols=200  Identities=12%  Similarity=0.124  Sum_probs=164.5

Q ss_pred             CccCCC-CEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKD-EHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG-~~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+|++ ++|++|+.||.|+|||+.+++....+.. .|...|.+++|+|++..+|++++.|+.|++||+.+..  ...+.
T Consensus        80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~  157 (383)
T 3ei3_B           80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV--IQVFA  157 (383)
T ss_dssp             EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE--EEEEE
T ss_pred             EECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc--eEEEe
Confidence            489999 8999999999999999998888777763 4778899999999544589999999999999998644  44444


Q ss_pred             c---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 006743           79 Q---HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        79 ~---H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~-~LatGs~DGsV~IWDlrs  153 (633)
                      .   |...|.+++|+|++++|++++.|+.|++||++ ++.+..+ .|...|.+++|+|++. +|++|+.|+.|++||+++
T Consensus       158 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          158 KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            4   44889999999999999999999999999995 4555444 6899999999999998 999999999999999997


Q ss_pred             CCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsP-dg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s  215 (633)
                      .......+...+|...|.+++|+| ++.+|            ++++.|+.|++||++......
T Consensus       237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKL------------LTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             CCSTTCEEEEEECSSCEEEEEECTTTSCEE------------EEEESSSEEEEEETTBTTSCS
T ss_pred             CCcccceEEEecCCCceEEEEEcCCCCCEE------------EEEcCCCcEEEEECCCCcccc
Confidence            432222333336999999999999 66554            445779999999997655543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=4.3e-25  Score=230.48  Aligned_cols=195  Identities=16%  Similarity=0.224  Sum_probs=156.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--~v~~   76 (633)
                      +|+|+|++|++|+.|+.|+|||+..+.  .+..+.+ |...|.+++|+|+++ +|++|+.|++|+|||+.....  .+..
T Consensus        68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccC-CCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence            489999999999999999999988764  4556665 677899999999998 899999999999999976542  2556


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS--SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v--~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      +..|...|.+++|+|++++|++++.|+.|++||+++++..  ..+ .|...|.+++|+|+|++|++|+.||+|+|||...
T Consensus       146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            7899999999999999999999999999999999887543  333 6899999999999999999999999999999743


Q ss_pred             CCC--------------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          154 KPQ--------------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       154 ~~k--------------~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ...              ++..+. ..|...|.+++|+|++..++            +++.|+.|++||+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~------------s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALA------------TACGDDAIRVFQEDP  283 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEE------------EEETTSCEEEEEECT
T ss_pred             CCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEE------------EEeCCCeEEEEEeCC
Confidence            211              111111 13788899999988655444            445566777776543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=4.3e-25  Score=231.95  Aligned_cols=194  Identities=15%  Similarity=0.155  Sum_probs=168.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-----ceeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-----PKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-----~~v~   75 (633)
                      +|+|++++|++|+.||.|+|||..+++....+.. +...|.+++|+|++. +|++|+.|+.+++|++....     ....
T Consensus        71 ~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~  148 (354)
T 2pbi_B           71 DWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKK  148 (354)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCC-EEEEeeCCCCEEEEEEeccccccccccce
Confidence            4899999999999999999999999988888876 456678899999998 89999999999999986431     2345


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEec--CCCEEEEEEcCCeEEEEECC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID--DDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSP--dG~~LatGs~DGsV~IWDlr  152 (633)
                      .+..|...|.+++|+|++..|++++.|++|++||+++++++..+ .|...|.+++|+|  ++++|++|+.||.|++||++
T Consensus       149 ~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            67789999999999999999999999999999999999988777 5889999999988  57899999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +. +++..+.  +|...|.+++|+|++.            ++++++.|+.|++||++..
T Consensus       229 ~~-~~~~~~~--~h~~~v~~v~~~p~~~------------~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          229 SG-QCVQAFE--THESDVNSVRYYPSGD------------AFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             TC-CEEEEEC--CCSSCEEEEEECTTSS------------EEEEEETTSCEEEEETTTT
T ss_pred             CC-cEEEEec--CCCCCeEEEEEeCCCC------------EEEEEeCCCeEEEEECCCC
Confidence            87 3445554  7999999999999644            4556678999999999753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=2.3e-25  Score=235.66  Aligned_cols=196  Identities=18%  Similarity=0.176  Sum_probs=162.9

Q ss_pred             ccCC-CCEEEEEECCCcEEEEECCCCceeEEEe----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743            2 YNCK-DEHLASISLSGDLILHNLASGAKAAELK----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         2 FSpd-G~~LaSgs~DG~I~IWDl~tgk~v~~~~----~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~   76 (633)
                      |.|+ +.+|++|+.|+.|++||+.+++.+..+.    ..|...|.+++|++.+.++|++|+.|++|++||++.....+..
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~  244 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT  244 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            5665 4579999999999999999999887763    2366778889998744459999999999999999855445778


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC--------CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--------EAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h--------~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      +.+|...|++++|+|++++|++|+.|++|++||+++++.+..+..        ...|.+++|+|+|++|++|+.||.|++
T Consensus       245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v  324 (380)
T 3iz6_a          245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV  324 (380)
T ss_dssp             ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred             ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence            899999999999999999999999999999999999988776632        124899999999999999999999999


Q ss_pred             EECCCCCCceEEEee--cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          149 YDIRGKPQPLTVLRA--CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       149 WDlrs~~k~v~~l~~--~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ||+...+. +..+..  .+|.+.|.+++|+|+++            +|++++.|+.|++||+..
T Consensus       325 wd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~------------~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          325 WDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGS------------ALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EETTTCCE-EEEECCSCSSCCCCCCEEEECSSSS------------EEEEECTTSCEEEEECCS
T ss_pred             EECCCCce-EEEEecccCCCCCceEEEEECCCCC------------EEEEeeCCCCEEEEecCC
Confidence            99987743 333311  37999999999999654            455567899999999853

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.1e-25  Score=230.16  Aligned_cols=194  Identities=14%  Similarity=0.235  Sum_probs=154.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCC--ceeEEE-eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------c
Q 006743            2 YNCKDEHLASISLSGDLILHNLASG--AKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------P   72 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tg--k~v~~~-~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~------~   72 (633)
                      |+++  +|++|+.|+.|++||+..+  +.+..+ ...|...|.+++|+|+++ +|++|+.|++|+|||+....      .
T Consensus        22 ~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~   98 (330)
T 2hes_X           22 FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMD   98 (330)
T ss_dssp             EETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------CCCE
T ss_pred             cCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccce
Confidence            4554  9999999999999999875  344555 333788899999999997 89999999999999995321      2


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 006743           73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR----RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVV  147 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg----k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~  147 (633)
                      ....+.+|...|++++|+|++++|++|+.|++|++||++..    +++..+ .|...|.+++|+|++.+|++|+.|+.|+
T Consensus        99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~  178 (330)
T 2hes_X           99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR  178 (330)
T ss_dssp             EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            35678899999999999999999999999999999999532    334444 5889999999999999999999999999


Q ss_pred             EEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          148 FYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       148 IWDlrs~~-k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +||.+... +++..+.  +|.+.|.+++|+|++          ++.++++++.|+.|++||++.
T Consensus       179 iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~----------~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          179 IWKDYDDDWECVAVLN--GHEGTVWSSDFDKTE----------GVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEETTEEEEEEEEC--CCSSCEEEEEECCSS----------SSCEEEEEETTSCEEEEEEEE
T ss_pred             EEECCCCCeeEEEEcc--CCCCcEEEEEecCCC----------CeeEEEEEeCCCeEEEEEecC
Confidence            99987642 2344444  899999999999952          245677788899999999853

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=1e-25  Score=238.24  Aligned_cols=191  Identities=11%  Similarity=0.084  Sum_probs=154.3

Q ss_pred             CccCCCCEEEEEE--CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe
Q 006743            1 MYNCKDEHLASIS--LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs--~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l   77 (633)
                      +|+|||++|++|+  .|+.|+|||+.+++.+..+.  +...|.+|+|+|+++ +|++++.|+ +++|+..++... ....
T Consensus       140 ~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~-~l~s~s~~~-~~~~~~~~~~~~~~~~~  215 (365)
T 4h5i_A          140 YISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGK-VVAYITGSS-LEVISTVTGSCIARKTD  215 (365)
T ss_dssp             EECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSS-EEEEECSSC-EEEEETTTCCEEEEECC
T ss_pred             EEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCc-eEEecccee-EEEEEeccCcceeeeec
Confidence            5899999987655  68999999999999988886  445688999999998 788887554 666666555533 3345


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCceee-----EeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPSS-----CITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DG----tVrIWDlrtgk~v~-----~i~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      ..|...|.+++|+|+++++++++.|+    .+++||+.......     ...|...|++++|+|||++||+|+.|+.|+|
T Consensus       216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~i  295 (365)
T 4h5i_A          216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIAL  295 (365)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence            67888999999999999999999887    68899988765422     2258889999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ||+++.+ ++..+ ..+|...|++++|+|+|++            |++++.|++|+|||+.
T Consensus       296 wd~~~~~-~~~~~-~~gH~~~V~~v~fSpdg~~------------laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          296 VKLKDLS-MSKIF-KQAHSFAITEVTISPDSTY------------VASVSAANTIHIIKLP  342 (365)
T ss_dssp             EETTTTE-EEEEE-TTSSSSCEEEEEECTTSCE------------EEEEETTSEEEEEECC
T ss_pred             EECCCCc-EEEEe-cCcccCCEEEEEECCCCCE------------EEEEeCCCeEEEEEcC
Confidence            9999873 33322 1379999999999996554            5556889999999984

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=9.1e-25  Score=227.19  Aligned_cols=189  Identities=16%  Similarity=0.185  Sum_probs=157.7

Q ss_pred             cC-CCCEEEEEECCCcEEEEECCCC-------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743            3 NC-KDEHLASISLSGDLILHNLASG-------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         3 Sp-dG~~LaSgs~DG~I~IWDl~tg-------k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      ++ ++++|++|+.|+.|+|||+.+.       .....+.+ |...|.+++|+|++. ++++|+.|++|+|||+++++. +
T Consensus        35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~~~-~  111 (343)
T 2xzm_R           35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTT-Y  111 (343)
T ss_dssp             TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTT-EEEEEETTSEEEEEETTSSCE-E
T ss_pred             cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCcE-E
Confidence            44 8999999999999999998754       23455655 677899999999998 899999999999999998874 6


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCC----------CEEEEEE
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDD----------WILTAGT  141 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG----------~~LatGs  141 (633)
                      ..+.+|...|++++|+|++++|++++.|++|++||+.........   .|...|.+++|+|++          .+|++++
T Consensus       112 ~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~  191 (343)
T 2xzm_R          112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG  191 (343)
T ss_dssp             EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence            678899999999999999999999999999999999854433333   478889999999987          7999999


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       142 ~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .||.|++||.+.  +....+.  +|...|.+++|+|++++            |++++.|+.|++||++.
T Consensus       192 ~d~~i~iwd~~~--~~~~~~~--~h~~~v~~~~~s~~g~~------------l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          192 WDGRLKVWNTNF--QIRYTFK--AHESNVNHLSISPNGKY------------IATGGKDKKLLIWDILN  244 (343)
T ss_dssp             TTSEEEEEETTT--EEEEEEE--CCSSCEEEEEECTTSSE------------EEEEETTCEEEEEESSC
T ss_pred             CCCEEEEEcCCC--ceeEEEc--CccccceEEEECCCCCE------------EEEEcCCCeEEEEECCC
Confidence            999999999543  2333343  89999999999996554            55557899999999853

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=1.4e-25  Score=236.07  Aligned_cols=195  Identities=14%  Similarity=0.154  Sum_probs=165.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|++++++|++|+.||.|++||+.+++....+.+ |...|.+++|+|+++ +|++|+.|+.|++||+.+.+. +..+.+|
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~-~~~~~~h  180 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSN-PRTLIGH  180 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCC-CEEEECC
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcC-ceEEcCC
Confidence            3789999999999999999999998887776654 778899999999988 899999999999999988774 5677899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee----CCCCeEEE---------------------EEecCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSL---------------------AFIDDDW  135 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~----h~~~ItsL---------------------afSPdG~  135 (633)
                      ...|.+++|+|++++|++++.|+.|++||+++++.+..+.    +...+.++                     +|+|+++
T Consensus       181 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (420)
T 3vl1_A          181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK  260 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence            9999999999999999999999999999999998887763    34445544                     4578899


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       136 ~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +|++|+.||.|++||+++.........  .|...|.+++|+|+++           .++++++.|+.|++||++..
T Consensus       261 ~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~-----------~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          261 YVIAGHVSGVITVHNVFSKEQTIQLPS--KFTCSCNSLTVDGNNA-----------NYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECC--TTSSCEEEEEECSSCT-----------TEEEEEETTSEEEEEETTCT
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEccc--ccCCCceeEEEeCCCC-----------CEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999998754333322  6889999999999644           25566678999999999754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.94  E-value=5.9e-26  Score=236.02  Aligned_cols=181  Identities=12%  Similarity=0.134  Sum_probs=144.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--~v~   75 (633)
                      +|+|++++|++++.||.|++||+.+++   ....+.. |...|.+++|+|+++ +|++|+.|+.|++||++....  ...
T Consensus        62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             EECTTTCCEEEEETTSSEEEC------CCCCEEECCC-CSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeee
Confidence            489999999999999999999998876   4555554 677899999999987 899999999999999987652  245


Q ss_pred             Eecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------CceeeEeeCCCCeEEEEEecCCCE
Q 006743           76 WLKQ-HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------------------RRPSSCITYEAPFSSLAFIDDDWI  136 (633)
Q Consensus        76 ~l~~-H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt------------------gk~v~~i~h~~~ItsLafSPdG~~  136 (633)
                      .+.. |...|++++|+|++++|++++.|+.|++||++.                  ++++..+.|...|.+++|+|++++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE
Confidence            6666 999999999999999999999999999999853                  334444478899999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCCCc---eEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          137 LTAGTSNGRVVFYDIRGKPQP---LTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       137 LatGs~DGsV~IWDlrs~~k~---v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      |++++.||.|++||+++...+   +..+.  +|...|.+++|+|++++|+++
T Consensus       220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEE
Confidence            999999999999999987653   23333  799999999999977666554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=1.9e-24  Score=219.97  Aligned_cols=194  Identities=17%  Similarity=0.256  Sum_probs=165.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|+|++. +|++|+.|+.|++||+++.+. +..+..|
T Consensus        72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~-~~~~~~~  148 (312)
T 4ery_A           72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC-LKTLPAH  148 (312)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCE-EEEECCC
T ss_pred             EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEE-EEEecCC
Confidence            4899999999999999999999999999998886 667788999999987 899999999999999998774 6778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ...|.+++|+|++++|++++.|+.|++||+++++.+..+  .+...+.+++|+|++++|++++.||.|++||+++. +.+
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~  227 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCL  227 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence            999999999999999999999999999999998887665  36678999999999999999999999999999987 334


Q ss_pred             EEEeecCCCCCeeE--EEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          159 TVLRACSSSEAVSS--LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       159 ~~l~~~~H~~~Vts--LafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ..+.  +|...+.+  ..|.+           .++.++++++.|+.|++||+...
T Consensus       228 ~~~~--~~~~~~~~~~~~~~~-----------~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          228 KTYT--GHKNEKYCIFANFSV-----------TGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             EEEC--SSCCSSSCCCEEEEC-----------SSSCEEEECCTTSCEEEEETTTC
T ss_pred             EEEE--ecCCceEEEEEEEEe-----------CCCcEEEEECCCCEEEEEECCCc
Confidence            4444  45444332  23332           25667788889999999998654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=9.2e-26  Score=234.58  Aligned_cols=199  Identities=12%  Similarity=0.163  Sum_probs=157.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC--ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tg--k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~   76 (633)
                      +|+|+|++|++|+.||.|+|||+.++  +.+..+.+ |...|.+++|+|+++ +|++++.|+.|+|||+.+..  .....
T Consensus        18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~   95 (377)
T 3dwl_C           18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRPDGTWKQTLV   95 (377)
T ss_dssp             EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTC-CEEEEETTSSEEEC------CCCCEEE
T ss_pred             EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeE
Confidence            48999999999999999999999888  66666765 677899999999987 89999999999999998765  22566


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eeEe-e-CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI-T-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~---v~~i-~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      +..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+ . |...|.+++|+|++++|++++.||.|++||+
T Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  175 (377)
T 3dwl_C           96 LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSA  175 (377)
T ss_dssp             CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEE
T ss_pred             ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEE
Confidence            788999999999999999999999999999999998763   4444 4 8999999999999999999999999999998


Q ss_pred             CCCC--------------CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          152 RGKP--------------QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       152 rs~~--------------k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +...              .....+..++|...|.+++|+|++++|            ++++.|+.|++||++....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l------------~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          176 YVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNAL------------AYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             CCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCE------------EEEETTTEEC-CEECSTTS
T ss_pred             EecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEE------------EEEeCCCcEEEEECCCCCC
Confidence            6321              012233333899999999999966554            4457799999999875443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=1.3e-24  Score=244.74  Aligned_cols=197  Identities=11%  Similarity=0.164  Sum_probs=161.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce--eEEEeC-------------------------------------------C
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAK--AAELKD-------------------------------------------P   35 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~--v~~~~~-------------------------------------------~   35 (633)
                      +|+|+|++||+|+.||.|+|||+.+++.  ...+.+                                           .
T Consensus        66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g  145 (611)
T 1nr0_A           66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG  145 (611)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred             EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC
Confidence            5899999999999999999999864332  112211                                           2


Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (633)
Q Consensus        36 ~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~  115 (633)
                      |...|.+++|+|++..+|++|+.|++|++||....+. ...+.+|...|++++|+|++++|++++.|++|++||+++++.
T Consensus       146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  224 (611)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence            4456777888888765799999999999999887653 567899999999999999999999999999999999999988


Q ss_pred             eeEe--------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE--------------------------
Q 006743          116 SSCI--------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL--------------------------  161 (633)
Q Consensus       116 v~~i--------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l--------------------------  161 (633)
                      +..+        .|.+.|.+++|+|++++|++++.|++|++||+++.+. +..+                          
T Consensus       225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  303 (611)
T 1nr0_A          225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALVSISAN  303 (611)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred             eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-eeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence            7766        5889999999999999999999999999999987532 1111                          


Q ss_pred             ---------------eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          162 ---------------RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       162 ---------------~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                                     ...+|...|++++|+|++++            +++++.|+.|++||+...
T Consensus       304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~------------l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKT------------LFSADAEGHINSWDISTG  356 (611)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE------------EEEEETTSCEEEEETTTC
T ss_pred             CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE------------EEEEeCCCcEEEEECCCC
Confidence                           12378899999999996554            555578999999998753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=1.2e-24  Score=222.11  Aligned_cols=194  Identities=12%  Similarity=0.173  Sum_probs=157.4

Q ss_pred             ccC--CCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-cee
Q 006743            2 YNC--KDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKV   74 (633)
Q Consensus         2 FSp--dG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~-~~v   74 (633)
                      |++  +|++|++|+.||+|+|||+.+++  .+..+.. |...|.+++|+|+  +. +|++|+.|+.|++||++... ...
T Consensus        61 ~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           61 WAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSP  138 (297)
T ss_dssp             ECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred             ecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec-CCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceee
Confidence            655  48999999999999999998774  4455554 6778999999997  55 89999999999999998653 224


Q ss_pred             EEeccCCCCeEEEEEcCC-------------CCEEEEEeCCCeEEEEeCCCCc----eeeEe-eCCCCeEEEEEecCC--
Q 006743           75 SWLKQHSAPTAGISFSSD-------------DKIIASVGLDKKLYTYDPGSRR----PSSCI-TYEAPFSSLAFIDDD--  134 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPd-------------g~~LaSgS~DGtVrIWDlrtgk----~v~~i-~h~~~ItsLafSPdG--  134 (633)
                      ..+.+|...|.+++|+|+             +++|++|+.|++|++||+++++    ....+ .|...|.+++|+|++  
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~  218 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence            567899999999999996             5799999999999999998765    33334 589999999999984  


Q ss_pred             -CEEEEEEcCCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          135 -WILTAGTSNGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       135 -~~LatGs~DGsV~IWDlrs~~k~v--~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                       .+|++++.|++|+|||++......  ..+....|...|.+++|+|++++|+            +++.|+.|++|++.
T Consensus       219 ~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~la------------s~~~D~~v~lw~~~  284 (297)
T 2pm7_B          219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA------------LSGGDNKVTLWKEN  284 (297)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE------------EEETTSCEEEEEEC
T ss_pred             ceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEE------------EEcCCCcEEEEEEC
Confidence             899999999999999998753222  2232246889999999999665554            45679999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=1.3e-24  Score=247.49  Aligned_cols=177  Identities=20%  Similarity=0.333  Sum_probs=152.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE---e
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW---L   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~---l   77 (633)
                      +|+++|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.|++|+|||+..... ...   .
T Consensus       437 ~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~-~~~~~~~  513 (694)
T 3dm0_A          437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECK-YTISEGG  513 (694)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEE-EEECSST
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcc-eeeccCC
Confidence            4899999999999999999999999999988886 667788999999998 799999999999999876542 222   1


Q ss_pred             ccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           78 KQHSAPTAGISFSSDD--KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg--~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      .+|...|.+++|+|++  ..|++++.|++|++||++++++...+ .|.+.|.+++|+|++++|++|+.||.|+|||+++.
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            4688899999999976  68999999999999999998887776 68999999999999999999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                      .    .+....+...|.+++|+|++.++++
T Consensus       594 ~----~~~~~~~~~~v~~~~~sp~~~~l~~  619 (694)
T 3dm0_A          594 K----KLYSLEANSVIHALCFSPNRYWLCA  619 (694)
T ss_dssp             E----EEECCBCSSCEEEEEECSSSSEEEE
T ss_pred             c----eEEEecCCCcEEEEEEcCCCcEEEE
Confidence            3    2233346678999999998766654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-24  Score=223.70  Aligned_cols=200  Identities=12%  Similarity=0.174  Sum_probs=166.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC--CCceeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCc-eeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSP-KVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~--tgk~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~~-~v~   75 (633)
                      +|+|++++|++|+.||.|+|||+.  +++.+..+.+ |...|.+++|+++  ++ +|++|+.||.|+|||+.+... .+.
T Consensus        18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~   95 (379)
T 3jrp_A           18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIA   95 (379)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCC-EEEEeccCCEEEEEEcCCCceeEee
Confidence            589999999999999999999997  4556666765 6778999999876  66 899999999999999987752 356


Q ss_pred             EeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcee---eEeeCCCCeEEEEEec-------------CCCEE
Q 006743           76 WLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPS---SCITYEAPFSSLAFID-------------DDWIL  137 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~v---~~i~h~~~ItsLafSP-------------dG~~L  137 (633)
                      .+..|...|.+++|+|+  +.+|++++.|+.|++||++++...   ....|...|.+++|+|             ++.+|
T Consensus        96 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l  175 (379)
T 3jrp_A           96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  175 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred             eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence            67789999999999998  999999999999999999987432   2336889999999999             69999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~-l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ++++.||.|++||++........ ....+|...|.+++|+|++         ..+.++++++.|+.|++||++..
T Consensus       176 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---------~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------LLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------SSSEEEEEEETTSCEEEEEESST
T ss_pred             EEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC---------CCCCeEEEEeCCCEEEEEeCCCC
Confidence            99999999999999876543222 2334799999999999951         01566777788999999998653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=5e-24  Score=215.40  Aligned_cols=193  Identities=17%  Similarity=0.184  Sum_probs=168.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+|++++|++++.||.|++||+.+++  ....+.. +...+.+++|+|+++ +|++++.||.|++||+.+.+. +..+.
T Consensus       104 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~-~~~~~  180 (337)
T 1gxr_A          104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTL-VRQFQ  180 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEEC
T ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc-CCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCce-eeeee
Confidence            488999999999999999999998877  4455554 667789999999987 899999999999999988764 66778


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      .|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+...+.+++|+|++++|++++.||.|++||+++...  
T Consensus       181 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--  258 (337)
T 1gxr_A          181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--  258 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--
T ss_pred             cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--
Confidence            899999999999999999999999999999999999988888999999999999999999999999999999998732  


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                        .....|...|.+++|+|++++            +++++.|+.|++||+....
T Consensus       259 --~~~~~~~~~v~~~~~~~~~~~------------l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          259 --YQLHLHESCVLSLKFAYCGKW------------FVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             --EEECCCSSCEEEEEECTTSSE------------EEEEETTSEEEEEETTTCC
T ss_pred             --EEEcCCccceeEEEECCCCCE------------EEEecCCCcEEEEECCCCe
Confidence              234479999999999996554            4555779999999986543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.4e-24  Score=225.33  Aligned_cols=194  Identities=14%  Similarity=0.203  Sum_probs=154.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC-------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-C-
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS-------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-S-   71 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t-------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~-~-   71 (633)
                      +|+|++++|++|+.|+.|+|||+..       .+.+..+.+ |...|.+++|+|+++ +|++|+.|++|+|||+... . 
T Consensus        65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-CCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCC
Confidence            4899999999999999999999853       234556665 677899999999998 8999999999999999532 1 


Q ss_pred             -ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeEe-eCCCCeEEEEEecC--CCEEEEEEcCCe
Q 006743           72 -PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCI-TYEAPFSSLAFIDD--DWILTAGTSNGR  145 (633)
Q Consensus        72 -~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v~~i-~h~~~ItsLafSPd--G~~LatGs~DGs  145 (633)
                       ..+..+.+|...|.+++|+|++.+|++++.|++|++||++++  +++..+ .|...|.+++|+|+  +.+|++|+.|++
T Consensus       143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence             235678899999999999999999999999999999999876  455555 68999999999998  779999999999


Q ss_pred             EEEEECCCCCC----ceEEE-eec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          146 VVFYDIRGKPQ----PLTVL-RAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       146 V~IWDlrs~~k----~v~~l-~~~-~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |++||++....    ..... ... .|...|.+++|++++             ++++++.|+.|++||+.
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-------------~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-------------LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-------------CEEEEETTSCEEEEEEE
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-------------EEEEEeCCCEEEEEEcC
Confidence            99999875421    01111 111 389999999998632             45666789999999964

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=2.4e-25  Score=229.56  Aligned_cols=200  Identities=10%  Similarity=0.131  Sum_probs=162.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~-~~v~   75 (633)
                      +|+++|++||+|+.|+.|+|||+.+++  .+..+.+ |...|.+++|++.  +. +|++|+.|++|+|||++++. ....
T Consensus        20 ~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~~~   97 (316)
T 3bg1_A           20 QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKSH   97 (316)
T ss_dssp             EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSS-CEEEEETTSCEEEECCSSSCCCEEE
T ss_pred             eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCC-EEEEEECCCEEEEEECCCCcceEEE
Confidence            489999999999999999999998775  3566776 6778999999753  55 89999999999999998764 2356


Q ss_pred             EeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcee---eEe-eCCCCeEEEEEecC----------------
Q 006743           76 WLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPS---SCI-TYEAPFSSLAFIDD----------------  133 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~v---~~i-~h~~~ItsLafSPd----------------  133 (633)
                      .+.+|...|++++|+|+  +.+|++|+.|+.|++||++.+...   ..+ .|...|.+++|+|+                
T Consensus        98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  177 (316)
T 3bg1_A           98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN  177 (316)
T ss_dssp             EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred             EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCcc
Confidence            67889999999999996  889999999999999999876422   222 58889999999997                


Q ss_pred             -CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          134 -DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       134 -G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                       +++|++|+.|+.|++||++............+|...|.+++|+|++.        .+..+|++++.|+.|++||+..
T Consensus       178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~--------~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG--------LPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS--------CSCCEEEEEETTCEEEEEECSS
T ss_pred             ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC--------CCCceEEEEcCCCeEEEEEccC
Confidence             47899999999999999975432122223348999999999999631        1346778889999999999854

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=1.9e-24  Score=237.34  Aligned_cols=185  Identities=20%  Similarity=0.327  Sum_probs=160.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++++.|+.|++||. +++.+..+.+ |...|.+++|+|+++ +|++++.|+.|++||.....  +..+.+|
T Consensus       392 ~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~~~--~~~~~~~  466 (577)
T 2ymu_A          392 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRNGQL--LQTLTGH  466 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTSCE--EEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCCC-EEEEEcCCCEEEEEECCCCE--EEEEcCC
Confidence            48999999999999999999995 6778888876 667789999999998 89999999999999976543  6778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...|++++|+|++++|++++.|+.|++||. +++++..+ .|...|++++|+|++++|++++.||.|+|||...  +++.
T Consensus       467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~--~~~~  543 (577)
T 2ymu_A          467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQ  543 (577)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--CEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC--CEEE
Confidence            999999999999999999999999999996 55666555 6899999999999999999999999999999643  3455


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      .+.  +|.+.|++++|+|++++|            ++++.|+.|++||
T Consensus       544 ~~~--~h~~~v~~~~fs~dg~~l------------~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          544 TLT--GHSSSVWGVAFSPDGQTI------------ASASSDKTVKLWN  577 (577)
T ss_dssp             EEE--CCSSCEEEEEECTTSSCE------------EEEETTSCEEEEC
T ss_pred             EEc--CCCCCEEEEEEcCCCCEE------------EEEeCCCEEEEeC
Confidence            555  899999999999965554            5557799999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.93  E-value=7.7e-25  Score=230.57  Aligned_cols=193  Identities=16%  Similarity=0.248  Sum_probs=155.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEE---EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAE---LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~---~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+|+++ +++++.||.|+|||+.+++....   ....|...|.+|+|+|+++ +|++|+.|+.|+|||+.+++. +..+
T Consensus       101 ~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~-~~~~  177 (357)
T 4g56_B          101 AWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAV-LKSY  177 (357)
T ss_dssp             EEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEE-EEEE
T ss_pred             EEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcE-EEEE
Confidence            4888875 55688899999999988764422   1224778899999999998 899999999999999998874 6778


Q ss_pred             ccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECC
Q 006743           78 KQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlr  152 (633)
                      ..|...|++++|++++ .++++++.|+.|++||++++++...+   .+...+.+++|+|+ +.+|++|+.|+.|++||++
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence            8999999999999976 58899999999999999998877655   36778999999997 5788999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +. +++..+.  +|...|++++|+|++           ..+|++++.|+.|+|||+..
T Consensus       258 ~~-~~~~~~~--~~~~~v~~l~~sp~~-----------~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          258 NP-DSAQTSA--VHSQNITGLAYSYHS-----------SPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             CG-GGCEEEC--CCSSCEEEEEECSSS-----------SCCEEEEETTSCEEEECTTS
T ss_pred             CC-cEeEEEe--ccceeEEEEEEcCCC-----------CCEEEEEeCCCEEEEEECCC
Confidence            87 4455555  799999999999963           34556678899999999854

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=7.3e-24  Score=214.19  Aligned_cols=189  Identities=11%  Similarity=0.081  Sum_probs=165.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|++++++|++++.||.|++||+.+++.+..+.. |...+.+++|+|++. +|++++.||.|++||+++.+. +. ...|
T Consensus       148 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~~-~~~~  223 (337)
T 1gxr_A          148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQ-LQ-QHDF  223 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-EE-EEEC
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCce-Ee-eecC
Confidence            4789999999999999999999999998888876 667789999999987 899999999999999998774 23 3457


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ...|.+++|+|++++|++++.|+.|++||+++++......|...|.+++|+|++++|++++.||.|++||+++... +..
T Consensus       224 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-~~~  302 (337)
T 1gxr_A          224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-IFQ  302 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE-EEE
Confidence            8899999999999999999999999999999988777778999999999999999999999999999999998743 222


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                         ..|...|.+++|+|+++            ++++++.|+.|++||+.
T Consensus       303 ---~~~~~~v~~~~~s~~~~------------~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          303 ---SKESSSVLSCDISVDDK------------YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ---EECSSCEEEEEECTTSC------------EEEEEETTSCEEEEEEE
T ss_pred             ---ecCCCcEEEEEECCCCC------------EEEEecCCCeEEEEEEe
Confidence               35889999999999654            44555779999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=4.8e-24  Score=240.20  Aligned_cols=197  Identities=13%  Similarity=0.155  Sum_probs=161.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEE---
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSW---   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~---   76 (633)
                      +|+|||++|++++ ++.|++||+.+++....+.+ |...|.+++|+|+++ +|++|+.||+|+|||+.+.... ...   
T Consensus        25 ~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~-h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~~  101 (611)
T 1nr0_A           25 GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPV  101 (611)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             eeCCCCCEEEeCC-CCEEEEecCCCcccCeEecC-CCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeecc
Confidence            4899999999987 56999999998888888886 667799999999998 8999999999999998543211 111   


Q ss_pred             -----------------------------------------eccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc
Q 006743           77 -----------------------------------------LKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRR  114 (633)
Q Consensus        77 -----------------------------------------l~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk  114 (633)
                                                               +.+|...|++++|+|++. +|++|+.|++|++||.++++
T Consensus       102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence                                                     345677778888888765 69999999999999999888


Q ss_pred             eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-----cCCCCCeeEEEEccCCCeEEEeccC
Q 006743          115 PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-----CSSSEAVSSLCWQRAKPVFIDETTC  188 (633)
Q Consensus       115 ~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~-----~~H~~~VtsLafsPdg~~Las~s~~  188 (633)
                      +...+ .|...|.+++|+|+|++|++|+.|+.|++||++++. ....+..     .+|.+.|.+++|+|+++        
T Consensus       182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~-~~~~~~~~~~~~~~h~~~V~~v~~spdg~--------  252 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDGT--------  252 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTTSS--------
T ss_pred             EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc-EeeeeccccccccccCCCEEEEEECCCCC--------
Confidence            77766 599999999999999999999999999999998773 3333321     16999999999999654        


Q ss_pred             CCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          189 KAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       189 sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                          +|++++.|+.|++||+.....
T Consensus       253 ----~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          253 ----KIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             ----EEEEEETTSEEEEEETTTTEE
T ss_pred             ----EEEEEeCCCeEEEEeCCCCce
Confidence                455567899999999975443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=3.8e-24  Score=226.27  Aligned_cols=198  Identities=19%  Similarity=0.295  Sum_probs=169.0

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCC-------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASG-------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tg-------k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      +|+| ++++|++|+.||.|+|||+.++       +.+..+.+ |...|.+++|+|++.++|++|+.||.|+|||+.+.+.
T Consensus        88 ~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  166 (402)
T 2aq5_A           88 AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA  166 (402)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc
Confidence            4888 8999999999999999999887       56677776 6678899999999866999999999999999998874


Q ss_pred             eeEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCC-eEEEEEecCCCEEEEE---EcCC
Q 006743           73 KVSWL--KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAP-FSSLAFIDDDWILTAG---TSNG  144 (633)
Q Consensus        73 ~v~~l--~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~-ItsLafSPdG~~LatG---s~DG  144 (633)
                       +..+  ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+  .|.+. +.+++|+|++.+|++|   +.|+
T Consensus       167 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          167 -VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             -EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             -cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence             5566  789999999999999999999999999999999999988776  46555 8999999999999999   7899


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .|++||+++...++.... ..|...|.+++|+|++++++           ++++.|+.|++||+....
T Consensus       246 ~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~-----------~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          246 QVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVY-----------LCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEE-----------EEETTCSCEEEEEECSST
T ss_pred             eEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEE-----------EEEcCCCeEEEEEecCCC
Confidence            999999998765554443 35778899999999755543           345569999999997544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-23  Score=214.67  Aligned_cols=195  Identities=15%  Similarity=0.229  Sum_probs=165.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|++||+.+++.+..+.+ |...|.+++|+|+++ +|++++.||.|++||+.+.+. +..+. |
T Consensus        39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~-~  114 (369)
T 3zwl_B           39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTK-YCVTGSADYSIKLWDVSNGQC-VATWK-S  114 (369)
T ss_dssp             EECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCE-EEEEE-C
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcE-EEEee-c
Confidence            4899999999999999999999999999998886 667789999999987 899999999999999998874 34444 8


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcee-----------e-EeeCCC--CeEEEEEecCCCEEEEEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPS-----------S-CITYEA--PFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrtgk~v-----------~-~i~h~~--~ItsLafSPdG~~LatGs  141 (633)
                      ...|.+++|+|++++|++++.+     +.|++||++.+...           . ...+..  .+.+++|+|++++|++++
T Consensus       115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (369)
T 3zwl_B          115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH  194 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE
T ss_pred             CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc
Confidence            8999999999999999999999     99999999765321           1 123444  899999999999999999


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       142 ~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .||.|++||+++....+..+.  .|...|.+++|+|++++            +++++.|+.|++||++....
T Consensus       195 ~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~------------l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          195 KDGKISKYDVSNNYEYVDSID--LHEKSISDMQFSPDLTY------------FITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             TTSEEEEEETTTTTEEEEEEE--CCSSCEEEEEECTTSSE------------EEEEETTSEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCcEeEEEEe--cCCCceeEEEECCCCCE------------EEEecCCceEEEEECCCCce
Confidence            999999999998545555555  78999999999996544            45557799999999976544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.92  E-value=7.2e-24  Score=221.94  Aligned_cols=196  Identities=21%  Similarity=0.316  Sum_probs=160.6

Q ss_pred             CccCCCC-EEEEE----------ECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006743            1 MYNCKDE-HLASI----------SLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (633)
Q Consensus         1 AFSpdG~-~LaSg----------s~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWD   66 (633)
                      +|+|+|+ +|++|          +.||.|+|||+.+++   .+..+  .+...|.+++|+|++. +|++|+.||.|+|||
T Consensus        19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~   95 (416)
T 2pm9_A           19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNK-IIAGALDNGSLELYS   95 (416)
T ss_dssp             CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSS-CEEEEESSSCEEEEC
T ss_pred             eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCC-eEEEEccCCeEEEee
Confidence            6999997 99999          889999999998875   33333  3677899999999998 899999999999999


Q ss_pred             CCC---CCceeEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc------eeeE----eeCCCCeEEEEEec
Q 006743           67 TTG---RSPKVSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRR------PSSC----ITYEAPFSSLAFID  132 (633)
Q Consensus        67 l~t---~~~~v~~l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk------~v~~----i~h~~~ItsLafSP  132 (633)
                      +..   ....+..+..|...|++++|+|+ +++|++++.|+.|++||+++++      ....    ..|...|.+++|+|
T Consensus        96 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  175 (416)
T 2pm9_A           96 TNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ  175 (416)
T ss_dssp             CSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS
T ss_pred             cccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC
Confidence            987   22346778899999999999997 8999999999999999999876      3322    25888999999999


Q ss_pred             C-CCEEEEEEcCCeEEEEECCCCCCceEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC---eEE
Q 006743          133 D-DWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD---SIL  204 (633)
Q Consensus       133 d-G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg---~Ik  204 (633)
                      + +.+|++++.||.|++||+++. +.+..+...    +|...|.+++|+|++           ..++++++.|+   .|+
T Consensus       176 ~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~d~~~~~i~  243 (416)
T 2pm9_A          176 SLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKN-----------STRVATATGSDNDPSIL  243 (416)
T ss_dssp             SCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSC-----------TTEEEEEECCSSSCCCC
T ss_pred             CCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCC-----------CCEEEEEECCCCCceEE
Confidence            9 789999999999999999987 334444421    127889999999964           33455566677   999


Q ss_pred             ccCCCCC
Q 006743          205 MPDPLPS  211 (633)
Q Consensus       205 IWDlr~~  211 (633)
                      +||++..
T Consensus       244 ~~d~~~~  250 (416)
T 2pm9_A          244 IWDLRNA  250 (416)
T ss_dssp             EEETTST
T ss_pred             EEeCCCC
Confidence            9999753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=6.9e-24  Score=218.25  Aligned_cols=197  Identities=14%  Similarity=0.185  Sum_probs=164.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l   77 (633)
                      +|+|+|++|++|+.||.|++||+.+++  .+..+.+ |...|.+++|+|+++ +|++++.||.|++||+.+.+.. ...+
T Consensus        15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~   92 (372)
T 1k8k_C           15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVI   92 (372)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCC-EEEEEcCCCeEEEEECCCCeeeeeEEe
Confidence            489999999999999999999998887  7777875 677899999999988 8999999999999999776532 3345


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~---v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ..|...|.+++|+|++++|++++.|+.|++||++.+..   ...+  .|...|.+++|+|++++|++++.||.|++||++
T Consensus        93 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C           93 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            77999999999999999999999999999999998763   2222  478899999999999999999999999999975


Q ss_pred             C-----------------CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          153 G-----------------KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       153 s-----------------~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .                 ..+++..+.  .|...|.+++|+|+++            ++++++.|+.|++||++....
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~------------~l~~~~~d~~i~i~d~~~~~~  236 (372)
T 1k8k_C          173 IKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGS------------RVAWVSHDSTVCLADADKKMA  236 (372)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSS------------EEEEEETTTEEEEEEGGGTTE
T ss_pred             cccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCC------------EEEEEeCCCEEEEEECCCCce
Confidence            2                 123333333  7999999999999654            455557799999999975543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.92  E-value=3.3e-23  Score=219.71  Aligned_cols=192  Identities=17%  Similarity=0.265  Sum_probs=161.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|++||+.+++.+..+.+ |...|.+++|++  . +|++|+.||.|++||++.....+..+..|
T Consensus       141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence            4899999999999999999999999999998885 677888999953  3 89999999999999998666567888999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCC-CEEEEEE--cCCeEEEEECCCCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGT--SNGRVVFYDIRGKPQ  156 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG-~~LatGs--~DGsV~IWDlrs~~k  156 (633)
                      ...|.+++|+|++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++ .++++|+  .||.|++||+++. +
T Consensus       217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~  295 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-A  295 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-C
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-C
Confidence            999999999999999999999999999999998888776 689999999999976 4555654  6999999999987 3


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ++..+.   +...|.+++|+|+++++++++          +..|+.|++||+..
T Consensus       296 ~~~~~~---~~~~v~~~~~s~~~~~l~~~~----------g~~dg~i~v~~~~~  336 (401)
T 4aez_A          296 RVNTVD---AGSQVTSLIWSPHSKEIMSTH----------GFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEEEEE---CSSCEEEEEECSSSSEEEEEE----------CTTTCEEEEEEEET
T ss_pred             EEEEEe---CCCcEEEEEECCCCCeEEEEe----------ecCCCcEEEEecCC
Confidence            444443   678899999999877765531          23467777777654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=3.1e-24  Score=225.90  Aligned_cols=207  Identities=13%  Similarity=0.148  Sum_probs=171.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++++.||.|++||+.+++....+..+  ..+....|+++++ +|++|+.||.|+|||+.+... ...+..|
T Consensus        63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~h  138 (420)
T 3vl1_A           63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQ-REIDQAH  138 (420)
T ss_dssp             EEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEE-EEETTSS
T ss_pred             eeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcce-eeecccc
Confidence            48999999999999999999999877665555532  5566667889987 899999999999999987763 5666799


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...|++++|+|++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++.+|++++.||.|++||+++. +.+.
T Consensus       139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~  217 (420)
T 3vl1_A          139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIH  217 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEE
T ss_pred             cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeE
Confidence            999999999999999999999999999999998887777 58999999999999999999999999999999987 3444


Q ss_pred             EEeec-CCCCCeeEEEEccCCCe---------EEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          160 VLRAC-SSSEAVSSLCWQRAKPV---------FIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       160 ~l~~~-~H~~~VtsLafsPdg~~---------Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .+... .|...|.+++|.+.+..         +.......++.++++++.|+.|++||++...
T Consensus       218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred             EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence            44422 47788999998765332         1122245678889999999999999997543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.6e-23  Score=209.90  Aligned_cols=194  Identities=13%  Similarity=0.192  Sum_probs=160.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC---------------------------------------------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP---------------------------------------------   35 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~---------------------------------------------   35 (633)
                      +|+|++++|++++.||.|++||+.+++.+..+...                                             
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~  160 (369)
T 3zwl_B           81 DVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK  160 (369)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence            36778888888888888888888776655444310                                             


Q ss_pred             -----------CC--CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 006743           36 -----------NE--QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD  102 (633)
Q Consensus        36 -----------~~--~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D  102 (633)
                                 +.  ..+.+++|+|+++ +|++++.||.|++||+......+..+..|...|.+++|+|++++|++++.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          161 VSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             ECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence                       01  1566777777776 788889999999999988544577788899999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC--------------eEEEEECCCCCCceEEEeecCCCC
Q 006743          103 KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG--------------RVVFYDIRGKPQPLTVLRACSSSE  168 (633)
Q Consensus       103 GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG--------------sV~IWDlrs~~k~v~~l~~~~H~~  168 (633)
                      +.|++||+++++.+..+.+...+.+++|+|++.++++++.++              .|++||..+. +++..+.  +|..
T Consensus       240 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~--~~~~  316 (369)
T 3zwl_B          240 TNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQ--GHFG  316 (369)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-CEEEEEE--CCSS
T ss_pred             ceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhhee--cccC
Confidence            999999999999999888999999999999999999999988              8999999987 3445554  7999


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .|++++|+|+++            +|++++.|+.|++||+..
T Consensus       317 ~v~~~~~s~~~~------------~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          317 PLNTVAISPQGT------------SYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             CEEEEEECTTSS------------EEEEEETTSEEEEEEECH
T ss_pred             cEEEEEECCCCC------------EEEEEcCCCeEEEEECcc
Confidence            999999999654            455567899999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=6.2e-24  Score=221.47  Aligned_cols=200  Identities=17%  Similarity=0.174  Sum_probs=167.2

Q ss_pred             CCCCE-EEEEECCCcEEEEECCC------CceeE-----EEe------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 006743            4 CKDEH-LASISLSGDLILHNLAS------GAKAA-----ELK------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW   65 (633)
Q Consensus         4 pdG~~-LaSgs~DG~I~IWDl~t------gk~v~-----~~~------~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW   65 (633)
                      +++++ |++++.||.|++||+.+      ++.+.     .+.      ..+...|.+++|+|++  +|++++.||.|++|
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS  212 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEE
Confidence            89999 99999999999999988      66665     664      3456778899999998  79999999999999


Q ss_pred             ECCCCCceeEEecc---C---CCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEe-e-------------CC
Q 006743           66 DTTGRSPKVSWLKQ---H---SAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCI-T-------------YE  122 (633)
Q Consensus        66 Dl~t~~~~v~~l~~---H---~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i-~-------------h~  122 (633)
                      |+++.+. +..+..   |   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+ .             |.
T Consensus       213 d~~~~~~-~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          213 ELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             ETTTTEE-EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             ECCCCce-eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence            9988764 566777   8   9999999999999999999999   99999999999888777 4             88


Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec----CC---------------CCCeeEEEEccCCCeEE
Q 006743          123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----SS---------------SEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       123 ~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~----~H---------------~~~VtsLafsPdg~~La  183 (633)
                      ..|.+++|+|++++|++++.||.|+|||+++. +++..+...    +|               ...|++++|+|++++++
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~  370 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG  370 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence            99999999999999999999999999999987 344444411    45               89999999999876665


Q ss_pred             EeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          184 DETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       184 s~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .+  ..+..++++++.|+.|++||+.
T Consensus       371 ~~--~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          371 MG--ADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TT--CTTSCEEEEEETTTEEEEEEEE
T ss_pred             cc--ccccceEEEecCCCcEEEEEcC
Confidence            54  2355788888999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=7.3e-24  Score=216.37  Aligned_cols=196  Identities=12%  Similarity=0.206  Sum_probs=160.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-eeEEEeCCC---CCcEEEEE----EccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELKDPN---EQVLRVLD----YSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-~v~~~~~~~---~~~VssLa----fSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      +|++++++|++++.||.|++||+.+++ .+..+..+.   ...+.+++    |++++. +|++++.||.|++||+++.+.
T Consensus       124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~  202 (357)
T 3i2n_A          124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMAL  202 (357)
T ss_dssp             GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEE
T ss_pred             ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCce
Confidence            478999999999999999999999887 677775433   34788888    678887 899999999999999998873


Q ss_pred             eeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeeEe------eCCCCeEEEEEecCCC-EEEEEEc
Q 006743           73 KVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI------TYEAPFSSLAFIDDDW-ILTAGTS  142 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSP---dg~~LaSgS~DGtVrIWDlrtgk~v~~i------~h~~~ItsLafSPdG~-~LatGs~  142 (633)
                        .....|...|.+++|+|   ++.+|++++.|+.|++||+++++....+      .|...|.+++|+|++. +|++++.
T Consensus       203 --~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  280 (357)
T 3i2n_A          203 --RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG  280 (357)
T ss_dssp             --EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             --eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC
Confidence              45577899999999999   9999999999999999999886654333      5899999999999998 8999999


Q ss_pred             CCeEEEEECCCCCCc----------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcc
Q 006743          143 NGRVVFYDIRGKPQP----------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (633)
Q Consensus       143 DGsV~IWDlrs~~k~----------------v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIW  206 (633)
                      ||.|++||++.....                .......+|...|++++|+|++++++           ++++.|+.|++|
T Consensus       281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-----------~s~~~d~~i~iw  349 (357)
T 3i2n_A          281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC-----------VCSSFDQTVRVL  349 (357)
T ss_dssp             TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE-----------EEEETTSEEEEE
T ss_pred             CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE-----------EEecCCCcEEEE
Confidence            999999999865332                12223337999999999999765543           245779999999


Q ss_pred             CCCC
Q 006743          207 DPLP  210 (633)
Q Consensus       207 Dlr~  210 (633)
                      |+..
T Consensus       350 ~~~~  353 (357)
T 3i2n_A          350 IVTK  353 (357)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            9864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.92  E-value=1.5e-23  Score=222.10  Aligned_cols=194  Identities=14%  Similarity=0.216  Sum_probs=155.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-----------eeEEEeCCC-----------CCcEEEEEEccCCC-eEEEEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA-----------KAAELKDPN-----------EQVLRVLDYSRNSR-HLLVTAG   57 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-----------~v~~~~~~~-----------~~~VssLafSpdg~-~lLaSGs   57 (633)
                      +|+|+|++||+|+.||.|+|||+.+++           ....+.+|.           ...|.+++|+|++. .+|++++
T Consensus        35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s  114 (447)
T 3dw8_B           35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST  114 (447)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence            489999999999999999999998876           467777643           16789999999973 3899999


Q ss_pred             CCCeEEEEECCCCCce---------------------------------------eEEeccCCCCeEEEEEcCCCCEEEE
Q 006743           58 DDGTLHLWDTTGRSPK---------------------------------------VSWLKQHSAPTAGISFSSDDKIIAS   98 (633)
Q Consensus        58 ~DGtI~IWDl~t~~~~---------------------------------------v~~l~~H~~~VtsLafSPdg~~LaS   98 (633)
                      .|+.|+|||+......                                       .....+|...|++++|+|++++|++
T Consensus       115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  194 (447)
T 3dw8_B          115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS  194 (447)
T ss_dssp             CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred             CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence            9999999998653311                                       1224689999999999999999999


Q ss_pred             EeCCCeEEEEeCCC-CceeeEe--------eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCc---eEEEeecC
Q 006743           99 VGLDKKLYTYDPGS-RRPSSCI--------TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQP---LTVLRACS  165 (633)
Q Consensus        99 gS~DGtVrIWDlrt-gk~v~~i--------~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~---v~~l~~~~  165 (633)
                      | .|+.|++||+++ ++.+..+        .|...|.+++|+|++ .+|++|+.||.|++||+++....   +..+.  .
T Consensus       195 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~  271 (447)
T 3dw8_B          195 A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE--E  271 (447)
T ss_dssp             E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC--C
T ss_pred             e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec--c
Confidence            8 799999999994 4444432        588999999999998 99999999999999999987431   45555  5


Q ss_pred             CCC------------CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          166 SSE------------AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       166 H~~------------~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      |..            .|.+++|+|++++|            ++++. +.|++||++.
T Consensus       272 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l------------~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          272 PEDPSNRSFFSEIISSISDVKFSHSGRYM------------MTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             C-----CCHHHHHTTCEEEEEECTTSSEE------------EEEES-SEEEEEETTC
T ss_pred             CCCccccccccccCceEEEEEECCCCCEE------------EEeeC-CeEEEEeCCC
Confidence            554            89999999965554            44465 9999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.1e-23  Score=214.24  Aligned_cols=196  Identities=13%  Similarity=0.186  Sum_probs=161.9

Q ss_pred             CccCC--CCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ce
Q 006743            1 MYNCK--DEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PK   73 (633)
Q Consensus         1 AFSpd--G~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~-~~   73 (633)
                      +|+++  +++|++|+.||.|++||+.+++  .+..+.. |...|.+++|+|+  +. +|++++.|+.|++||+.... ..
T Consensus        62 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           62 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             EECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCC
T ss_pred             EeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCcee
Confidence            36666  8999999999999999999887  5555554 6778999999999  76 89999999999999998763 23


Q ss_pred             eEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEeCCCCcee----eEe-eCCCCeEEEEEecC--
Q 006743           74 VSWLKQHSAPTAGISFSS-------------DDKIIASVGLDKKLYTYDPGSRRPS----SCI-TYEAPFSSLAFIDD--  133 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSP-------------dg~~LaSgS~DGtVrIWDlrtgk~v----~~i-~h~~~ItsLafSPd--  133 (633)
                      ...+..|...|.+++|+|             ++.+|++++.|+.|++||++++...    ..+ .|...|.+++|+|+  
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            456778999999999999             6999999999999999999876532    223 48899999999999  


Q ss_pred             -CCEEEEEEcCCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          134 -DWILTAGTSNGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       134 -G~~LatGs~DGsV~IWDlrs~~k~v--~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                       +.+|++++.||.|++||++......  ..+....|...|++++|+|++++|+            +++.|+.|++||+..
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~------------~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA------------LSGGDNKVTLWKENL  287 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE------------EEESSSSEEEEEEEE
T ss_pred             CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE------------EecCCCcEEEEeCCC
Confidence             8999999999999999999864332  2333335889999999999765554            446699999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=2.6e-23  Score=213.93  Aligned_cols=193  Identities=8%  Similarity=0.027  Sum_probs=162.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEe-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~-~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~---~v~~   76 (633)
                      +|+|++++|++++.||.|++||+.+++....+. ..+...|.+++|+|+++ +|++++.|+.|++||+.....   ....
T Consensus        59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeee
Confidence            488999999999999999999998887555443 34677899999999987 899999999999999987663   2334


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC------------------CCceeeEe-eCCCCeEEEEEecCCCEE
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG------------------SRRPSSCI-TYEAPFSSLAFIDDDWIL  137 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr------------------tgk~v~~i-~h~~~ItsLafSPdG~~L  137 (633)
                      ...|...|.+++|+|++++|++++.|+.|++||++                  .++.+..+ .|...|.+++|+|++.+|
T Consensus       138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  217 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  217 (372)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence            46789999999999999999999999999999964                  56666666 688999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ++++.||.|++||+++. +++..+.  .|...|.+++|+|+++            +++++ .|+.|++||++.
T Consensus       218 ~~~~~d~~i~i~d~~~~-~~~~~~~--~~~~~v~~~~~~~~~~------------~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          218 AWVSHDSTVCLADADKK-MAVATLA--SETLPLLAVTFITESS------------LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEETTTEEEEEEGGGT-TEEEEEE--CSSCCEEEEEEEETTE------------EEEEE-TTSSCEEEEEET
T ss_pred             EEEeCCCEEEEEECCCC-ceeEEEc--cCCCCeEEEEEecCCC------------EEEEE-eCCeEEEEEccC
Confidence            99999999999999987 3455555  7889999999999544            44444 689999999865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=2.1e-23  Score=237.70  Aligned_cols=194  Identities=15%  Similarity=0.199  Sum_probs=162.2

Q ss_pred             CccCCC-CEEEEEECCCcEEEEECCCCc-----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743            1 MYNCKD-EHLASISLSGDLILHNLASGA-----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpdG-~~LaSgs~DG~I~IWDl~tgk-----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      +|++++ ++|++|+.||.|+|||+.+..     ....+.+ |...|.+++|+|+++ +|++|+.||.|+|||+.++.. .
T Consensus       389 ~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~~~-~  465 (694)
T 3dm0_A          389 ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQ-FALSGSWDGELRLWDLAAGVS-T  465 (694)
T ss_dssp             ECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-E
T ss_pred             EecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcc-e
Confidence            366664 799999999999999997532     3455665 677889999999998 899999999999999988764 5


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecCC--CEEEEEEcCCeEEE
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDD--WILTAGTSNGRVVF  148 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG--~~LatGs~DGsV~I  148 (633)
                      ..+.+|...|.+++|+|++++|++|+.|++|++||+.........    .|...|.+++|+|++  .+|++|+.||.|++
T Consensus       466 ~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~v  545 (694)
T 3dm0_A          466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV  545 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred             eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEE
Confidence            678899999999999999999999999999999998765444332    477889999999986  68999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ||+++. +....+.  +|.+.|++++|+|+++            ++++++.|+.|++||++...
T Consensus       546 wd~~~~-~~~~~~~--~h~~~v~~v~~spdg~------------~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          546 WNLSNC-KLRSTLA--GHTGYVSTVAVSPDGS------------LCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             EETTTC-CEEEEEC--CCSSCEEEEEECTTSS------------EEEEEETTSBCEEEETTTTE
T ss_pred             EECCCC-cEEEEEc--CCCCCEEEEEEeCCCC------------EEEEEeCCCeEEEEECCCCc
Confidence            999987 3444444  8999999999999654            45556789999999997543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.91  E-value=1.1e-22  Score=217.41  Aligned_cols=197  Identities=13%  Similarity=0.213  Sum_probs=159.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC----------------------------------------CCCcE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP----------------------------------------NEQVL   40 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~----------------------------------------~~~~V   40 (633)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+|                                        |...+
T Consensus       154 ~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~  233 (420)
T 4gga_A          154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV  233 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred             EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce
Confidence            58999999999999999999999888766555431                                        33345


Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEeccCCCCeEEEEEcC-CCCEEEEE--eCCCeEEEEeCCCCc
Q 006743           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQHSAPTAGISFSS-DDKIIASV--GLDKKLYTYDPGSRR  114 (633)
Q Consensus        41 ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~---~v~~l~~H~~~VtsLafSP-dg~~LaSg--S~DGtVrIWDlrtgk  114 (633)
                      ..+.|++++. ++++++.|+.|+|||....+.   .+.....|...|.+++|+| +..+++++  +.|++|++||+++++
T Consensus       234 ~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~  312 (420)
T 4gga_A          234 CGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  312 (420)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred             eeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence            5566777776 678888888888888865442   2456678999999999999 55666654  579999999999999


Q ss_pred             eeeEeeCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743          115 PSSCITYEAPFSSLAFIDDDWILTAGT--SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (633)
Q Consensus       115 ~v~~i~h~~~ItsLafSPdG~~LatGs--~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~  192 (633)
                      +...+.+...+.++.|++++..+++++  .||.|+|||+++. +++..+.  +|.+.|++++|+|+|++           
T Consensus       313 ~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~--gH~~~V~~l~~spdg~~-----------  378 (420)
T 4gga_A          313 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELK--GHTSRVLSLTMSPDGAT-----------  378 (420)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEEC--CCSSCEEEEEECTTSSC-----------
T ss_pred             cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEc--CCCCCEEEEEEcCCCCE-----------
Confidence            999998888999999999999998776  6899999999987 4555555  89999999999996555           


Q ss_pred             EEEEeeCCCeEEccCCCCCCC
Q 006743          193 ALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       193 lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                       |++++.|++|++||+....+
T Consensus       379 -l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          379 -VASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             -EEEEETTTEEEEECCSCSSC
T ss_pred             -EEEEecCCeEEEEECCCCCc
Confidence             45557899999999976554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=6.3e-24  Score=217.12  Aligned_cols=197  Identities=14%  Similarity=0.144  Sum_probs=163.0

Q ss_pred             CccCC----CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            1 MYNCK----DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpd----G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSp-dg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      +|+++    |++|++|+.||.|++||+.+++.+..+.+ |...|.+++|+| ++. +|++|+.||.|++||+.+.+. +.
T Consensus        76 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~  152 (366)
T 3k26_A           76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTL-VA  152 (366)
T ss_dssp             EEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEE-EE
T ss_pred             EeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeE-EE
Confidence            36777    67999999999999999999999998886 677899999999 665 899999999999999988774 44


Q ss_pred             Ee---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-----------------------------eCCC
Q 006743           76 WL---KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----------------------------TYEA  123 (633)
Q Consensus        76 ~l---~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-----------------------------~h~~  123 (633)
                      .+   ..|...|.+++|+|++++|++++.|+.|++||+++++....+                             .|..
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence            55   689999999999999999999999999999999987654332                             1889


Q ss_pred             CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc-----------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743          124 PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP-----------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (633)
Q Consensus       124 ~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~-----------v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~  192 (633)
                      .|.+++|+  +++|++++.||.|++||+++....           ........|...|++++|+|+          .++.
T Consensus       233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------~~~~  300 (366)
T 3k26_A          233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD----------FWQK  300 (366)
T ss_dssp             CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC----------TTSS
T ss_pred             eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC----------CCCc
Confidence            99999999  779999999999999999876431           112222378889999999985          0145


Q ss_pred             EEEEeeCCCeEEccCCCCCC
Q 006743          193 ALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       193 lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ++++++.|+.|++||+....
T Consensus       301 ~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          301 MLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             EEEEECTTSCEEEEECCSSS
T ss_pred             EEEEEecCCcEEEEECCCCC
Confidence            55666789999999996543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.91  E-value=4.5e-23  Score=226.49  Aligned_cols=187  Identities=21%  Similarity=0.334  Sum_probs=160.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|++||. +++.+..+.+ |...|.+++|+|+++ +|++++.|+.|++||....  .+..+.+|
T Consensus       351 ~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~~--~~~~~~~~  425 (577)
T 2ymu_A          351 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQ--LLQTLTGH  425 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC-CSSCEEEEEECTTSS-CEEEEETTSEEEEECTTCC--EEEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC-CCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCC--EEEEecCC
Confidence            48999999999999999999995 6778888876 667789999999998 7999999999999997543  36778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ...|++++|+|++++|++++.|+.|++||...........|...|.+++|+|++++|++++.|+.|++||...  +.+..
T Consensus       426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~  503 (577)
T 2ymu_A          426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQT  503 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--CEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEE
Confidence            9999999999999999999999999999975443333447999999999999999999999999999999643  34555


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +.  +|...|++++|+|++++|            ++++.|+.|++||.
T Consensus       504 ~~--~h~~~v~~l~~s~dg~~l------------~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          504 LT--GHSSSVRGVAFSPDGQTI------------ASASDDKTVKLWNR  537 (577)
T ss_dssp             EE--CCSSCEEEEEECTTSSCE------------EEEETTSEEEEECT
T ss_pred             Ee--CCCCCEEEEEEcCCCCEE------------EEEECcCEEEEEeC
Confidence            55  899999999999976555            45577999999995

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=2.9e-23  Score=216.97  Aligned_cols=205  Identities=15%  Similarity=0.179  Sum_probs=168.9

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCC--CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~--~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+| ++++|++++.||.|++||+.+ ..+..+..+.  ...|.+++|+|++. +|++|+.|+.|++||++..  .+..+
T Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~~~~  200 (383)
T 3ei3_B          125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGH--EIFKE  200 (383)
T ss_dssp             EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTSC--EEEEE
T ss_pred             EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCCC--EEEEe
Confidence            4788 678999999999999999975 5666665543  46799999999998 8999999999999999543  36778


Q ss_pred             ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC----CceeeEeeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEEC
Q 006743           78 KQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGS----RRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrt----gk~v~~i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDl  151 (633)
                      ..|...|.+++|+|+++ +|++++.|+.|++||+++    +.++..+.|...|.+++|+| ++.+|++++.||.|++||+
T Consensus       201 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~  280 (383)
T 3ei3_B          201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS  280 (383)
T ss_dssp             ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred             ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence            89999999999999988 999999999999999998    66777778999999999999 9999999999999999999


Q ss_pred             CCCCCceEEEe----ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          152 RGKPQPLTVLR----ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       152 rs~~k~v~~l~----~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ++.........    ...|...+. +.|+|++..++.+ ...++.+  +++.|+.|++||+.....
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~-~s~dg~~--s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          281 YDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAG-RYPDDQL--LLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             TBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEE-CBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred             CCCccccccccccccccccccceE-EeccCCCCceEEE-ecCCccc--ccCCCCeEEEEecCCCce
Confidence            98754433321    123556666 5899988888766 3445555  778899999999865443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=2.7e-23  Score=212.15  Aligned_cols=178  Identities=19%  Similarity=0.293  Sum_probs=148.1

Q ss_pred             CccCC---CCEEEEEECCCcEEEEECCC-Ccee-EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            1 MYNCK---DEHLASISLSGDLILHNLAS-GAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpd---G~~LaSgs~DG~I~IWDl~t-gk~v-~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      +|+|+   |++|++|+.||.|+|||+.+ +..+ ..+.+ |...|.+++|+|+++ +|++++.||.|++||+.+..  ..
T Consensus        46 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~--~~  121 (368)
T 3mmy_A           46 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGS-KVFTASCDKTAKMWDLSSNQ--AI  121 (368)
T ss_dssp             EECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE--EE
T ss_pred             EEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCC-EEEEEcCCCcEEEEEcCCCC--ce
Confidence            47888   69999999999999999987 5555 45554 778899999999988 89999999999999999887  34


Q ss_pred             EeccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeeEe----------------------------------
Q 006743           76 WLKQHSAPTAGISF--SSDDKIIASVGLDKKLYTYDPGSRRPSSCI----------------------------------  119 (633)
Q Consensus        76 ~l~~H~~~VtsLaf--SPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----------------------------------  119 (633)
                      .+..|...|.+++|  ++++++|++++.|+.|++||+++++.+..+                                  
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  201 (368)
T 3mmy_A          122 QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQP  201 (368)
T ss_dssp             EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSC
T ss_pred             eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecccc
Confidence            46789999999999  889999999999999999999876432111                                  


Q ss_pred             ---------------------------------------------------------eCCC------------CeEEEEE
Q 006743          120 ---------------------------------------------------------TYEA------------PFSSLAF  130 (633)
Q Consensus       120 ---------------------------------------------------------~h~~------------~ItsLaf  130 (633)
                                                                               .|..            .|.+++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (368)
T 3mmy_A          202 SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF  281 (368)
T ss_dssp             EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred             chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence                                                                     0111            6999999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +|++++|++|+.||.|++||+++. +++..+.  .|...|++++|+|++++|+++
T Consensus       282 sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~--~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          282 HPVHGTLATVGSDGRFSFWDKDAR-TKLKTSE--QLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             CTTTCCEEEEETTSCEEEEETTTT-EEEEECC--CCSSCEEEEEECTTSSCEEEE
T ss_pred             ecCCCEEEEEccCCeEEEEECCCC-cEEEEec--CCCCCceEEEECCCCCeEEEE
Confidence            999999999999999999999987 3344444  789999999999977776665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1e-23  Score=235.85  Aligned_cols=191  Identities=13%  Similarity=0.227  Sum_probs=157.0

Q ss_pred             CccCC------CCEEEEEECCCcEEEEECCCCce-----------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743            1 MYNCK------DEHLASISLSGDLILHNLASGAK-----------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (633)
Q Consensus         1 AFSpd------G~~LaSgs~DG~I~IWDl~tgk~-----------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~   63 (633)
                      +|+|+      +++||+|+.||+|+|||+.+++.           ...+.+ |...|.+++|++++  .|++|+.||+|+
T Consensus       214 ~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~~~v~sv~~s~~~--~lasgs~DgtV~  290 (524)
T 2j04_B          214 KWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-ADSLITTFDFLSPT--TVVCGFKNGFVA  290 (524)
T ss_dssp             EECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-TTTCEEEEEESSSS--EEEEEETTSEEE
T ss_pred             EECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-CCCCEEEEEecCCC--eEEEEeCCCEEE
Confidence            36665      67999999999999999987642           234554 56789999999863  799999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEe-eCC--CCeEEEEEecCCCEE
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGI--SFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYE--APFSSLAFIDDDWIL  137 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsL--afSPdg-~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~--~~ItsLafSPdG~~L  137 (633)
                      +||+++.......+..|...|++|  +|++++ .+|++|+.|++|++||++++++...+ .|.  ..|.+++|+|++..+
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY  370 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred             EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence            999987654456688999999999  567787 89999999999999999988776554 343  358899999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ++++.|++|++||+++... +..+.  +|.+.|++|+|+|++++|            ++++.|+.|++||+.
T Consensus       371 ~s~~~d~tv~lwd~~~~~~-~~~l~--gH~~~V~sva~Sp~g~~l------------~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          371 IYSDGASSLRAVPSRAAFA-VHPLV--SRETTITAIGVSRLHPMV------------LAGSADGSLIITNAA  427 (524)
T ss_dssp             EEECSSSEEEEEETTCTTC-CEEEE--ECSSCEEEEECCSSCCBC------------EEEETTTEEECCBSC
T ss_pred             EEeCCCCcEEEEECccccc-ceeee--cCCCceEEEEeCCCCCeE------------EEEECCCEEEEEech
Confidence            9999999999999998743 34444  699999999999976555            455779999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.91  E-value=3.4e-24  Score=220.99  Aligned_cols=192  Identities=15%  Similarity=0.207  Sum_probs=154.6

Q ss_pred             ccC--CCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCce--
Q 006743            2 YNC--KDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPK--   73 (633)
Q Consensus         2 FSp--dG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~~~--   73 (633)
                      |++  ++++|++|+.|+.|+|||+.+++  .+..+.+ |...|.+++|+|+  +. +|++|+.|+.|++||+......  
T Consensus        65 ~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           65 WAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAG-HDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             ECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECC-CSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEE
T ss_pred             eCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccC-CCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcce
Confidence            654  48999999999999999998774  4555654 6677899999998  54 8999999999999999875321  


Q ss_pred             eEEeccCCCCeEEEEEcCC-----------------CCEEEEEeCCCeEEEEeCCCC---ceeeEe-eCCCCeEEEEEec
Q 006743           74 VSWLKQHSAPTAGISFSSD-----------------DKIIASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFID  132 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPd-----------------g~~LaSgS~DGtVrIWDlrtg---k~v~~i-~h~~~ItsLafSP  132 (633)
                      ...+..|...|.+++|+|+                 +++|++|+.|++|++||++..   +++..+ .|...|.+++|+|
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp  222 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP  222 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC
T ss_pred             eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC
Confidence            3446789999999999997                 478999999999999999765   233334 5899999999999


Q ss_pred             CC----CEEEEEEcCCeEEEEECCCCC---CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEc
Q 006743          133 DD----WILTAGTSNGRVVFYDIRGKP---QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (633)
Q Consensus       133 dG----~~LatGs~DGsV~IWDlrs~~---k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkI  205 (633)
                      ++    .+|++|+.||+|+|||++...   .....+.  .|...|.+++|+|++++|+            +++.|+.|++
T Consensus       223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~la------------s~~~D~~v~l  288 (316)
T 3bg1_A          223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILA------------VSGGDNKVTL  288 (316)
T ss_dssp             CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEE------------EEESSSCEEE
T ss_pred             CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEE------------EEcCCCeEEE
Confidence            86    899999999999999998631   1223333  5789999999999765554            4577999999


Q ss_pred             cCCC
Q 006743          206 PDPL  209 (633)
Q Consensus       206 WDlr  209 (633)
                      |++.
T Consensus       289 w~~~  292 (316)
T 3bg1_A          289 WKES  292 (316)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=2.3e-23  Score=212.71  Aligned_cols=199  Identities=14%  Similarity=0.203  Sum_probs=164.5

Q ss_pred             CccCC---CCEEEEEECCCcEEEEECCCCc-eeEEEeCCCCCcEEEEEE------ccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            1 MYNCK---DEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDY------SRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         1 AFSpd---G~~LaSgs~DG~I~IWDl~tgk-~v~~~~~~~~~~VssLaf------Spdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      +|+|+   |++|++|+.||.|++||+.+++ .+..+.+ |...|.+++|      +++++ +|++++.||.|++||+...
T Consensus        72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~  149 (357)
T 3i2n_A           72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG-HKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQK  149 (357)
T ss_dssp             ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC-CSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSC
T ss_pred             EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe-cccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCC
Confidence            47787   7999999999999999999888 7777775 6777888965      57777 8999999999999999887


Q ss_pred             CceeEEeccCCC----CeEEEE----EcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEec---CCCEEEE
Q 006743           71 SPKVSWLKQHSA----PTAGIS----FSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID---DDWILTA  139 (633)
Q Consensus        71 ~~~v~~l~~H~~----~VtsLa----fSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSP---dG~~Lat  139 (633)
                      ...+..+..|..    .|.+++    |+|++++|++++.|+.|++||+++++......+...|.+++|+|   ++.+|++
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  229 (357)
T 3i2n_A          150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA  229 (357)
T ss_dssp             SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred             CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE
Confidence            644566665554    899998    67899999999999999999999999887778999999999999   9999999


Q ss_pred             EEcCCeEEEEECCCCCCceE--EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          140 GTSNGRVVFYDIRGKPQPLT--VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v~--~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ++.||.|++||+++......  .....+|...|++++|+|+++           .++++++.|+.|++||++...
T Consensus       230 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          230 TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR-----------ELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE-----------EEEEEEETTSEEEEEEEECCS
T ss_pred             ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC-----------cEEEEEeCCCcEEEeecCCCc
Confidence            99999999999987532211  112237999999999999533           256677889999999986543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=2.4e-23  Score=223.67  Aligned_cols=196  Identities=20%  Similarity=0.328  Sum_probs=166.0

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCC----------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 006743            1 MYNCK-DEHLASISLSGDLILHNLAS----------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         1 AFSpd-G~~LaSgs~DG~I~IWDl~t----------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t   69 (633)
                      +|+|+ +++|++++.||.|+|||+..          .+.+..+.+ |...|.+++|+|++..+|++|+.||.|+|||+..
T Consensus       135 ~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  213 (430)
T 2xyi_A          135 RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA  213 (430)
T ss_dssp             EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred             EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence            47886 67999999999999999976          566777776 5667888999999877899999999999999987


Q ss_pred             CCce------eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---ceeeEe-eCCCCeEEEEEecCCC-EE
Q 006743           70 RSPK------VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFIDDDW-IL  137 (633)
Q Consensus        70 ~~~~------v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg---k~v~~i-~h~~~ItsLafSPdG~-~L  137 (633)
                      ....      ...+..|...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+ .|...|.+++|+|++. +|
T Consensus       214 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l  293 (430)
T 2xyi_A          214 TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL  293 (430)
T ss_dssp             CCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             CCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEE
Confidence            3311      345678999999999999 7889999999999999999987   455555 6889999999999887 68


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ++|+.||.|++||+++...++..+.  .|...|++++|+|+++           .++++++.|+.|++||+..
T Consensus       294 ~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~~~-----------~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          294 ATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNE-----------TILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSSCT-----------TEEEEEETTSCCEEEEGGG
T ss_pred             EEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCCCC-----------CEEEEEeCCCcEEEEeCCC
Confidence            8999999999999998667777776  7999999999999643           4566677899999999865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.7e-24  Score=221.33  Aligned_cols=198  Identities=14%  Similarity=0.216  Sum_probs=165.7

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCCCceeEEEeCCC-----CCcEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCC
Q 006743            1 MYNCK-DEHLASISLSGDLILHNLASGAKAAELKDPN-----EQVLRVLDYSRNSRHLLVTAGDDG---TLHLWDTTGRS   71 (633)
Q Consensus         1 AFSpd-G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~-----~~~VssLafSpdg~~lLaSGs~DG---tI~IWDl~t~~   71 (633)
                      +|+++ +.+|++++.||.|++||+.+++.+..+..+.     ...|.+++|+|++..+|++++.|+   .|++||++...
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            47888 7899999999999999999999988887643     678999999999866899999999   99999998865


Q ss_pred             ceeEEec-cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEE
Q 006743           72 PKVSWLK-QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVV  147 (633)
Q Consensus        72 ~~v~~l~-~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~  147 (633)
                      ..+..+. .|...|.+++|+| ++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++ .+|++++.||.|+
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence            4456677 8999999999999 9999999999999999999999888777 588999999999998 8999999999999


Q ss_pred             EEECCCCCCceEE--------------Eeec------------------CCCCCeeEEEEccCCCeEEEeccCCCCeEEE
Q 006743          148 FYDIRGKPQPLTV--------------LRAC------------------SSSEAVSSLCWQRAKPVFIDETTCKAETALL  195 (633)
Q Consensus       148 IWDlrs~~k~v~~--------------l~~~------------------~H~~~VtsLafsPdg~~Las~s~~sd~~lLl  195 (633)
                      |||+.+.......              +...                  .|..++.+++|+|+|++|+            
T Consensus       332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la------------  399 (416)
T 2pm9_A          332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQ------------  399 (416)
T ss_dssp             EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEEC------------
T ss_pred             EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEE------------
Confidence            9999876432211              0000                  1567788899998655554            


Q ss_pred             EeeCCCeEEccCCCC
Q 006743          196 GGAVGDSILMPDPLP  210 (633)
Q Consensus       196 Sgs~Dg~IkIWDlr~  210 (633)
                      +++.|+.|+|||+..
T Consensus       400 ~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          400 ITPDGKGVSITNPKI  414 (416)
T ss_dssp             BCTTSSCBCCBCCCC
T ss_pred             EeCCCCeEEEEEecc
Confidence            446799999999853

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=1.7e-22  Score=205.27  Aligned_cols=176  Identities=19%  Similarity=0.347  Sum_probs=150.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.|+.|++|+............ +...+..+.+.+++. +|++|+.|+.+++||+............|
T Consensus        93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~  170 (340)
T 4aow_A           93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESH  170 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred             EECCCCCEEEEEcccccceEEeecccceeeeecC-CCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence            4899999999999999999999988887777765 455667788999887 79999999999999998777556667789


Q ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           81 SAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        81 ~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      ...|.+++|+++  ..++++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|+.||.|++||+++. ++
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~  249 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KH  249 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EE
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ce
Confidence            999999999984  467899999999999999999888776 68999999999999999999999999999999987 33


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeE
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~L  182 (633)
                      +..+.   +...|.+++|+|++.++
T Consensus       250 ~~~~~---~~~~v~~~~~~~~~~~~  271 (340)
T 4aow_A          250 LYTLD---GGDIINALCFSPNRYWL  271 (340)
T ss_dssp             EEEEE---CSSCEEEEEECSSSSEE
T ss_pred             eeeec---CCceEEeeecCCCCcee
Confidence            33333   56789999999865443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=1.4e-23  Score=214.49  Aligned_cols=194  Identities=18%  Similarity=0.245  Sum_probs=159.1

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEEe--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce----
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK----   73 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~--~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~----   73 (633)
                      +|+| ++++|++|+.||.|++||+.+++.+..+.  ..|...|.+++|+|++. +|++++.||.|++||+++.+..    
T Consensus       122 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  200 (366)
T 3k26_A          122 KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIK  200 (366)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHH
T ss_pred             EECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccc
Confidence            4788 89999999999999999999999888873  24778899999999987 8999999999999999865421    


Q ss_pred             -----------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--------------e
Q 006743           74 -----------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP--------------S  116 (633)
Q Consensus        74 -----------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~--------------v  116 (633)
                                             ......|...|.+++|+  +++|++++.|+.|++||++++..              +
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  278 (366)
T 3k26_A          201 ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL  278 (366)
T ss_dssp             HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred             eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence                                   12233499999999999  78999999999999999987643              3


Q ss_pred             eEe-eCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCCCc---eEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          117 SCI-TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQP---LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       117 ~~i-~h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~~k~---v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                      ..+ .|...|.+++|+|+  +++|++|+.||.|++||+++....   ...+..+.|...|++++|+|++++         
T Consensus       279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------  349 (366)
T 3k26_A          279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSI---------  349 (366)
T ss_dssp             EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSE---------
T ss_pred             ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCe---------
Confidence            333 47889999999999  999999999999999999986432   224443334799999999996544         


Q ss_pred             CeEEEEeeCCCeEEccCCC
Q 006743          191 ETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIWDlr  209 (633)
                         |++++.|+.|++||+.
T Consensus       350 ---l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          350 ---LIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ---EEEEETTSEEEEEEC-
T ss_pred             ---EEEEeCCCEEEEEEec
Confidence               5555789999999984

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=1e-22  Score=232.98  Aligned_cols=180  Identities=13%  Similarity=0.167  Sum_probs=156.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.. |...|.+++|+|+++ +|++|+.||.|+|||+.+++. +..+..|
T Consensus        20 ~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~-~~~~~~~   96 (814)
T 3mkq_A           20 DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEK-VVDFEAH   96 (814)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCE-EEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE-EEEEecC
Confidence            5899999999999999999999999999999886 667889999999998 899999999999999998874 6677889


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      ...|++++|+|++++|++++.||.|++||++++ .....+ .|...|.+++|+| ++.+|++++.||.|++||+++....
T Consensus        97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A           97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (814)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            999999999999999999999999999999987 444444 5889999999999 8899999999999999999876443


Q ss_pred             eEEEeecCCCCCeeEEEEcc--CCCeEEEe
Q 006743          158 LTVLRACSSSEAVSSLCWQR--AKPVFIDE  185 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsP--dg~~Las~  185 (633)
                      .....  .+...|.+++|+|  ++.+++++
T Consensus       177 ~~~~~--~~~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          177 FTLTT--GQERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             EEEEC--CCTTCCCEEEECCSTTCCEEEEE
T ss_pred             eEEec--CCCCCEEEEEEEECCCCCEEEEE
Confidence            33322  4558899999998  77666644

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=1.3e-22  Score=210.55  Aligned_cols=199  Identities=15%  Similarity=0.191  Sum_probs=164.5

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEEe------------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELK------------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT   67 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~------------~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl   67 (633)
                      +|+| ++++|++|+.||.|++||+.+++....+.            ..|...|.+++|+|++..+|++++.||.|++||+
T Consensus        50 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  129 (408)
T 4a11_B           50 DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT  129 (408)
T ss_dssp             EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEET
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeC
Confidence            4889 99999999999999999999877554443            2377889999999955458999999999999999


Q ss_pred             CCCCceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCC-EEEEEEc
Q 006743           68 TGRSPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTS  142 (633)
Q Consensus        68 ~t~~~~v~~l~~H~~~VtsLafSP---dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~-~LatGs~  142 (633)
                      .+... .. ...+...+.+++|++   ++.++++++.|+.|++||+++++.+..+ .|...|.+++|+|++. +|++|+.
T Consensus       130 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          130 NTLQT-AD-VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             TTTEE-EE-EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCcc-ce-eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC
Confidence            98773 33 334788999999998   4559999999999999999998887777 5899999999999998 5889999


Q ss_pred             CCeEEEEECCCCCCceEEEee-------------cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          143 NGRVVFYDIRGKPQPLTVLRA-------------CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       143 DGsV~IWDlrs~~k~v~~l~~-------------~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ||.|++||++....++..+..             ..|...|.+++|+|++++            +++++.|+.|++||++
T Consensus       208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH------------LLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE------------EEEEETTSCEEEEETT
T ss_pred             CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE------------EEEecCCCeEEEEECC
Confidence            999999999987655554421             368899999999996554            4555779999999997


Q ss_pred             CCCC
Q 006743          210 PSVT  213 (633)
Q Consensus       210 ~~~~  213 (633)
                      ....
T Consensus       276 ~~~~  279 (408)
T 4a11_B          276 NGEN  279 (408)
T ss_dssp             TCCB
T ss_pred             CCcc
Confidence            6443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.1e-23  Score=216.48  Aligned_cols=191  Identities=8%  Similarity=0.008  Sum_probs=154.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---------CCCc
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---------GRSP   72 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~---------t~~~   72 (633)
                      +.+++++|++|+.||.|++||+.+++.+..+.   ...|.++.|+|.    +++++.|++|++|+..         +...
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            34578899999999999999999999888776   244566778876    8999999999999765         3332


Q ss_pred             eeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           73 KVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      .......|...|.+++|+|  ++++|++++.|+.|++||+++++.+...  .+...|.+++|+|++.+|++|+.||.|+|
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            2233346778999999999  9999999999999999999999887655  35667999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ||+++.......+.. +|.+.|++++|+|++.+|            ++++ |+.|++||++....
T Consensus       197 wd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l------------~s~~-~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          197 YNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWM------------VVEC-DQTVVCFDLRKDVG  247 (343)
T ss_dssp             EESSCTTSCCEECCC-CTTSCEEEEEECTTSSEE------------EEEE-SSBEEEEETTSSTT
T ss_pred             EECCCCCCCccEEec-cCCCCEEEEEEeCCCCEE------------EEEe-CCeEEEEEcCCCCc
Confidence            999998654345542 399999999999965554            4446 55999999987554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.91  E-value=3.6e-23  Score=248.88  Aligned_cols=151  Identities=18%  Similarity=0.318  Sum_probs=139.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.||.|+|||+.+++. +..+.+|
T Consensus       622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~-~~~~~~~  698 (1249)
T 3sfz_A          622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKL-VHTYDEH  698 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE-EEEEECC
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCce-EEEEcCC
Confidence            5899999999999999999999999999999986 677889999999998 899999999999999998874 6778899


Q ss_pred             CCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           81 SAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        81 ~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      ...|.+++|+|  ++.++++|+.|+.|++||+++++++..+ .|...|.+++|+|++.+|++++.||.|++||+++.
T Consensus       699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred             CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence            99999999999  6678999999999999999999988776 68999999999999999999999999999999865

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.2e-22  Score=209.52  Aligned_cols=193  Identities=20%  Similarity=0.310  Sum_probs=158.0

Q ss_pred             CccCCCC-EEEEEECCCcEEEEEC----CCCc------eeEEEeC----C-----CCCcEEEEEEccCCCeEEEEEeCCC
Q 006743            1 MYNCKDE-HLASISLSGDLILHNL----ASGA------KAAELKD----P-----NEQVLRVLDYSRNSRHLLVTAGDDG   60 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl----~tgk------~v~~~~~----~-----~~~~VssLafSpdg~~lLaSGs~DG   60 (633)
                      +|+|+|+ +|++|+.||.|++||+    .+++      ....+..    +     |...|.+++|+|+++ +|++|+.||
T Consensus        52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg  130 (425)
T 1r5m_A           52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENG  130 (425)
T ss_dssp             EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-EEEEEETTS
T ss_pred             EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-EEEEEeCCC
Confidence            4899999 9999999999999999    8887      4444442    1     566899999999987 899999999


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe---------------------
Q 006743           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---------------------  119 (633)
Q Consensus        61 tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i---------------------  119 (633)
                      .|++||... . .+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+                     
T Consensus       131 ~i~i~~~~~-~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (425)
T 1r5m_A          131 ELRLWNKTG-A-LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL  208 (425)
T ss_dssp             CEEEEETTS-C-EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCC
T ss_pred             eEEEEeCCC-C-eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcce
Confidence            999999443 3 36778899999999999999999999999999999999876543321                     


Q ss_pred             ------------------------------------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743          120 ------------------------------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (633)
Q Consensus       120 ------------------------------------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~  163 (633)
                                                          .|...|.+++|+|++++|++++.||.|++||+++.. .+..+. 
T Consensus       209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-  286 (425)
T 1r5m_A          209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFY-  286 (425)
T ss_dssp             BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-CSEEEC-
T ss_pred             eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-cceEec-
Confidence                                                356789999999999999999999999999999863 445554 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                       .|...|.+++|+|++             ++++++.|+.|++||++...
T Consensus       287 -~~~~~i~~~~~~~~~-------------~l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          287 -GHSQSIVSASWVGDD-------------KVISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             -CCSSCEEEEEEETTT-------------EEEEEETTSEEEEEETTTTE
T ss_pred             -CCCccEEEEEECCCC-------------EEEEEeCCCcEEEEECCCCc
Confidence             689999999999953             55666789999999997543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.91  E-value=2.1e-22  Score=213.56  Aligned_cols=192  Identities=15%  Similarity=0.263  Sum_probs=162.8

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~   82 (633)
                      +.+++.+++++.||.|++||+.+++....+...+...|.+++|+|++. +|++|+.||.|++||+.+.+. +..+..|..
T Consensus       100 ~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~  177 (401)
T 4aez_A          100 DWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVESQTK-LRTMAGHQA  177 (401)
T ss_dssp             EECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EEEECCCSS
T ss_pred             eecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcCCeE-EEEecCCCC
Confidence            345667888999999999999999998888877788899999999987 899999999999999988774 677889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrt-gk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      .|.+++|+  +++|++++.|+.|++||++. ...+..+ .|...|.+++|+|++.+|++|+.||.|++||+++. .+...
T Consensus       178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~  254 (401)
T 4aez_A          178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKFT  254 (401)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-SEEEE
T ss_pred             ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-CccEE
Confidence            99999995  68999999999999999994 4444444 68999999999999999999999999999999986 33444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee--CCCeEEccCCCCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA--VGDSILMPDPLPSV  212 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs--~Dg~IkIWDlr~~~  212 (633)
                      +.  .|...|.+++|+|++..+           +++++  .|+.|++||++...
T Consensus       255 ~~--~~~~~v~~~~~~p~~~~l-----------l~~~~gs~d~~i~i~d~~~~~  295 (401)
T 4aez_A          255 KT--NHNAAVKAVAWCPWQSNL-----------LATGGGTMDKQIHFWNAATGA  295 (401)
T ss_dssp             EC--CCSSCCCEEEECTTSTTE-----------EEEECCTTTCEEEEEETTTCC
T ss_pred             ec--CCcceEEEEEECCCCCCE-----------EEEecCCCCCEEEEEECCCCC
Confidence            43  799999999999975433           33333  69999999996543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.4e-22  Score=209.19  Aligned_cols=191  Identities=14%  Similarity=0.232  Sum_probs=163.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-------   73 (633)
                      +|+|++++|++|+.||.|++|| .+++.+..+.. |...|.+++|+|+++ +|++++.||.|++||+.+.+..       
T Consensus       115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  191 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKE  191 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred             EEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence            4899999999999999999999 67788888875 677889999999998 8999999999999999654321       


Q ss_pred             ------------------------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 006743           74 ------------------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKL  105 (633)
Q Consensus        74 ------------------------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtV  105 (633)
                                                                      +..+..|...|.+++|+|++++|++++.|+.|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          192 TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             --------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEE
Confidence                                                            12345788899999999999999999999999


Q ss_pred             EEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743          106 YTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       106 rIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                      ++||+++++.+..+ .|...|.+++|+|++ +|++++.||.|++||+++. +.+..+.  .|...|.+++|+|++++   
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~--~~~~~i~~~~~s~~~~~---  344 (425)
T 1r5m_A          272 RIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSI--VDGVPIFAGRISQDGQK---  344 (425)
T ss_dssp             EEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEE--CTTCCEEEEEECTTSSE---
T ss_pred             EEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecc--cCCccEEEEEEcCCCCE---
Confidence            99999998887777 588999999999999 9999999999999999887 3444444  78899999999996554   


Q ss_pred             eccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          185 ETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       185 ~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                               +++++.|+.|++||+..
T Consensus       345 ---------l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          345 ---------YAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             ---------EEEEETTSCEEEEECHH
T ss_pred             ---------EEEEECCCeEEEEECCC
Confidence                     45557799999999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=6.7e-22  Score=198.97  Aligned_cols=193  Identities=16%  Similarity=0.203  Sum_probs=157.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|++||+++++.+..+.+ |...+.++.  +++. ++++++.++.+++|+.......+..+.+|
T Consensus        74 ~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~-h~~~~~~~~--~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~  149 (318)
T 4ggc_A           74 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLS--WNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGH  149 (318)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEE--EETT-EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EECCCCCEEEEEECCCcEEEeecCCceeEEEecC-ccceEEEee--cCCC-EEEEEecCCceEeeecCCCceeEEEEcCc
Confidence            4899999999999999999999999999999987 445555444  4455 89999999999999998887778888999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-------------------------------------------
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-------------------------------------------  117 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-------------------------------------------  117 (633)
                      ...+.++.|.+++++|++++.|+.|++||+++++...                                           
T Consensus       150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~  229 (318)
T 4ggc_A          150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  229 (318)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred             cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence            9999999999999999999999999999987643110                                           


Q ss_pred             ------EeeCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCC
Q 006743          118 ------CITYEAPFSSLAFIDDDWILTAGT--SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCK  189 (633)
Q Consensus       118 ------~i~h~~~ItsLafSPdG~~LatGs--~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~s  189 (633)
                            ...+...+..++|+|++..+++++  .|+.|+|||+++. +++..+.  +|.+.|++++|+|++++        
T Consensus       230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~--gH~~~V~~l~~spdg~~--------  298 (318)
T 4ggc_A          230 SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELK--GHTSRVLSLTMSPDGAT--------  298 (318)
T ss_dssp             TCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEEC--CCSSCEEEEEECTTSSC--------
T ss_pred             cccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEc--CCCCCEEEEEEcCCCCE--------
Confidence                  001234566788888888887665  7899999999987 4555555  89999999999996555        


Q ss_pred             CCeEEEEeeCCCeEEccCCCCCC
Q 006743          190 AETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       190 d~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                          |++++.|+.|+|||+....
T Consensus       299 ----l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          299 ----VASAAADETLRLWRCFELD  317 (318)
T ss_dssp             ----EEEEETTTEEEEECCSCCC
T ss_pred             ----EEEEecCCeEEEEECCCCC
Confidence                4555789999999996543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=5e-23  Score=214.63  Aligned_cols=196  Identities=17%  Similarity=0.159  Sum_probs=162.3

Q ss_pred             CccCC----C---CEEEEEECCCcEEEEECCCCce-----eEEEeCCC----CCcEEEEEEc----cCCCeE-EEEEeCC
Q 006743            1 MYNCK----D---EHLASISLSGDLILHNLASGAK-----AAELKDPN----EQVLRVLDYS----RNSRHL-LVTAGDD   59 (633)
Q Consensus         1 AFSpd----G---~~LaSgs~DG~I~IWDl~tgk~-----v~~~~~~~----~~~VssLafS----pdg~~l-LaSGs~D   59 (633)
                      +|+++    |   ++|++++.||.|++||+.+++.     +..+..+.    ...|.+++|+    |++. + |++++.|
T Consensus        69 ~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~d  147 (397)
T 1sq9_A           69 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVK  147 (397)
T ss_dssp             EEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETT
T ss_pred             EEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCC
Confidence            36777    8   9999999999999999988886     77777643    5789999999    9988 7 9999999


Q ss_pred             CeEEEEECCC------CCcee----EEe-------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--
Q 006743           60 GTLHLWDTTG------RSPKV----SWL-------KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--  120 (633)
Q Consensus        60 GtI~IWDl~t------~~~~v----~~l-------~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--  120 (633)
                      |.|++||+..      .....    ..+       ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.  
T Consensus       148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  226 (397)
T 1sq9_A          148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ  226 (397)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc
Confidence            9999999987      44321    144       4588999999999999 99999999999999999998887774  


Q ss_pred             --C---CCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCCCceEEEeecC-------------CCCCeeEEEEccCC
Q 006743          121 --Y---EAPFSSLAFIDDDWILTAGTSN---GRVVFYDIRGKPQPLTVLRACS-------------SSEAVSSLCWQRAK  179 (633)
Q Consensus       121 --h---~~~ItsLafSPdG~~LatGs~D---GsV~IWDlrs~~k~v~~l~~~~-------------H~~~VtsLafsPdg  179 (633)
                        |   ...|.+++|+|++.+|++++.|   |.|++||+++. +++..+.  .             |...|.+++|+|++
T Consensus       227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~  303 (397)
T 1sq9_A          227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLS--VPTHSSQASLGEFAHSSWVMSLSFNDSG  303 (397)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEEC--BC--------CCBSBSSCEEEEEECSSS
T ss_pred             ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceec--cCcccccccccccccCCcEEEEEECCCC
Confidence              5   8999999999999999999999   99999999987 4445554  4             89999999999965


Q ss_pred             CeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       180 ~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ++            |++++.|+.|++||++....
T Consensus       304 ~~------------l~~~~~dg~i~iwd~~~~~~  325 (397)
T 1sq9_A          304 ET------------LCSAGWDGKLRFWDVKTKER  325 (397)
T ss_dssp             SE------------EEEEETTSEEEEEETTTTEE
T ss_pred             CE------------EEEEeCCCeEEEEEcCCCce
Confidence            44            55557799999999976544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=2.6e-22  Score=208.26  Aligned_cols=199  Identities=16%  Similarity=0.139  Sum_probs=160.7

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+| ++++|++++.||.|++||+.+++.+..+.  +...+.++.|.+.+.  .++++++.||.|++||+.+... +..+
T Consensus       106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~  182 (408)
T 4a11_B          106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHIL  182 (408)
T ss_dssp             EECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEE
T ss_pred             EEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeee
Confidence            3778 77899999999999999999998888887  456778899988542  2899999999999999988774 5678


Q ss_pred             ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-eeeE----------------eeCCCCeEEEEEecCCCEEEE
Q 006743           78 KQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRR-PSSC----------------ITYEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk-~v~~----------------i~h~~~ItsLafSPdG~~Lat  139 (633)
                      ..|...|.+++|+|++. +|++++.||.|++||++++. .+..                ..|...|.+++|+|++.+|++
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence            89999999999999888 69999999999999998765 2222                247788999999999999999


Q ss_pred             EEcCCeEEEEECCCCCCce--------------------------------------------EEEeecCCCCCeeEEEE
Q 006743          140 GTSNGRVVFYDIRGKPQPL--------------------------------------------TVLRACSSSEAVSSLCW  175 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v--------------------------------------------~~l~~~~H~~~VtsLaf  175 (633)
                      ++.||.|++||+++.....                                            ......+|...|++++|
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  342 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF  342 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence            9999999999998753210                                            11122368999999999


Q ss_pred             ccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          176 QRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       176 sPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      +|++++            |++++.|+.|++||+....+.
T Consensus       343 s~~~~~------------l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          343 QSNFQE------------LYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             ETTTTE------------EEEEETTSCEEEEEECC----
T ss_pred             cCCCCE------------EEEECCCCeEEEEeCCCCCcc
Confidence            996544            555678999999999876553

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=2.3e-22  Score=216.07  Aligned_cols=197  Identities=16%  Similarity=0.231  Sum_probs=160.9

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCce-------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-
Q 006743            1 MYNCKDE-HLASISLSGDLILHNLASGAK-------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-   71 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~-------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-   71 (633)
                      +|+|++. +|++|+.||.|++||+..+..       ...+. .|...|.+++|+|++..+|++++.||.|++||++... 
T Consensus       188 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          188 SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             EECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             EeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence            4889988 999999999999999987432       33444 4677899999999666699999999999999998762 


Q ss_pred             -ceeEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-CceeeEe-eCCCCeEEEEEecCCC-EEEEEEcCCeE
Q 006743           72 -PKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGRV  146 (633)
Q Consensus        72 -~~v~~l~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrt-gk~v~~i-~h~~~ItsLafSPdG~-~LatGs~DGsV  146 (633)
                       ..+..+..|...|++++|+|++. +|++|+.||.|++||+++ ..++..+ .|...|.+++|+|++. +|++++.||.|
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i  346 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL  346 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred             CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence             33566779999999999999776 799999999999999998 4555555 5899999999999984 78999999999


Q ss_pred             EEEECCCCCC-----------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          147 VFYDIRGKPQ-----------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       147 ~IWDlrs~~k-----------~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +|||++....           +.......+|...|++++|+|+++           .++++++.|+.|++|++.
T Consensus       347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-----------~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-----------WIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST-----------TEEEEEETTSEEEEEEEC
T ss_pred             EEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC-----------CEEEEEECCCCEEEeEcc
Confidence            9999987321           123334448999999999999654           245666789999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.90  E-value=1e-22  Score=215.22  Aligned_cols=195  Identities=13%  Similarity=0.183  Sum_probs=156.5

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCC----
Q 006743            2 YNCKDEHL-ASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRS----   71 (633)
Q Consensus         2 FSpdG~~L-aSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSp-dg~~lLaSGs~DGtI~IWDl~t~~----   71 (633)
                      ++++...+ ++++.||.|+||++....    .+..+.+ |...|.+++|+| ++. +|++|+.||.|+|||+.+..    
T Consensus        42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~~  119 (402)
T 2aq5_A           42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDN-VIASGSEDCTVMVWEIPDGGLVLP  119 (402)
T ss_dssp             ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTT-EEEEEETTSEEEEEECCTTCCSSC
T ss_pred             ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCC-EEEEEeCCCeEEEEEccCCCCccc
Confidence            34444333 347889999999986542    2333444 778899999999 665 99999999999999998763    


Q ss_pred             --ceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           72 --PKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        72 --~~v~~l~~H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                        ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+   .|...|.+++|+|++.+|++++.||.
T Consensus       120 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  199 (402)
T 2aq5_A          120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR  199 (402)
T ss_dssp             BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE
T ss_pred             cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc
Confidence              2356788999999999999987 79999999999999999999988777   38899999999999999999999999


Q ss_pred             EEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEeccCCCCeEEEEe---eCCCeEEccCCCCCC
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDETTCKAETALLGG---AVGDSILMPDPLPSV  212 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~-VtsLafsPdg~~Las~s~~sd~~lLlSg---s~Dg~IkIWDlr~~~  212 (633)
                      |++||+++.. .+..+. ..|.+. +.+++|+|++++            ++++   +.|+.|++||++...
T Consensus       200 i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~------------l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          200 VRVIEPRKGT-VVAEKD-RPHEGTRPVHAVFVSEGKI------------LTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEEEETTTTE-EEEEEE-CSSCSSSCCEEEECSTTEE------------EEEEECTTCCEEEEEEETTBCS
T ss_pred             EEEEeCCCCc-eeeeec-cCCCCCcceEEEEcCCCcE------------EEEeccCCCCceEEEEcCcccc
Confidence            9999999873 333331 267665 899999996544            4444   569999999997543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.90  E-value=2.5e-23  Score=223.66  Aligned_cols=207  Identities=14%  Similarity=0.176  Sum_probs=162.6

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCC--CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~--~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+| ++++|++|+.||+|+|||++++.. ..+..++  ...+.+++|++++. +|++|+.||.|++||+++..  +..+
T Consensus       171 ~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~--~~~~  246 (435)
T 4e54_B          171 KFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKE--LWNL  246 (435)
T ss_dssp             EECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCB--CCCS
T ss_pred             EEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcce--eEEE
Confidence            4887 689999999999999999976543 3333333  34567799999998 89999999999999998655  5678


Q ss_pred             ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeE----eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           78 KQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSC----ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~~----i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ..|...|++++|+|++. +|++++.|+.|++||+++.+....    ..|...|.+++|+|+|.+|++++.||.|+|||++
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            89999999999999665 788999999999999998654432    3688999999999999999999999999999999


Q ss_pred             CCCCceEEEeec---CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          153 GKPQPLTVLRAC---SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       153 s~~k~v~~l~~~---~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +...+.......   .....+....|+|++.+++++...++..+++++..++.|++||+...
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g  388 (435)
T 4e54_B          327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG  388 (435)
T ss_dssp             SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred             CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence            875443322210   11123456789999999888755555666666666788999998543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.6e-23  Score=216.81  Aligned_cols=199  Identities=13%  Similarity=0.170  Sum_probs=161.7

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCC---Cc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---CC
Q 006743            1 MYNC-KDEHLASISLSGDLILHNLAS---GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---GR   70 (633)
Q Consensus         1 AFSp-dG~~LaSgs~DG~I~IWDl~t---gk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~---t~   70 (633)
                      +|+| ++++|++|+.||.|+|||+.+   +.   ....+  .|...|.+++|+|++. +|++|+.||.|++||+.   .+
T Consensus        70 ~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~  146 (437)
T 3gre_A           70 AVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQE  146 (437)
T ss_dssp             EEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEET
T ss_pred             EECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCC
Confidence            4889 999999999999999999876   43   23333  3778899999999887 89999999999999994   33


Q ss_pred             CceeEEec----------c--CCCCeEEEE--EcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecC
Q 006743           71 SPKVSWLK----------Q--HSAPTAGIS--FSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDD  133 (633)
Q Consensus        71 ~~~v~~l~----------~--H~~~VtsLa--fSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPd  133 (633)
                      +. .....          .  +...+.++.  +++++.+|++++.|+.|++||+++++++..+.   |...|.+++|+|+
T Consensus       147 ~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~  225 (437)
T 3gre_A          147 SE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE  225 (437)
T ss_dssp             TE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT
T ss_pred             ce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC
Confidence            31 11111          2  567778877  56789999999999999999999999887774   7899999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          134 DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       134 G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +.+|++|+.||.|++||+++. +++..+. ..|...|.+++|+|.        ...++.++++++.|+.|++||++....
T Consensus       226 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-~~~~~~v~~~~~~~~--------~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          226 CCVLILGTTRGIIDIWDIRFN-VLIRSWS-FGDHAPITHVEVCQF--------YGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             SCEEEEEETTSCEEEEETTTT-EEEEEEB-CTTCEEEEEEEECTT--------TCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCeEEEEEcCCc-cEEEEEe-cCCCCceEEEEeccc--------cCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            999999999999999999986 3444433 267789999999874        345677888999999999999975443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.5e-23  Score=218.64  Aligned_cols=192  Identities=10%  Similarity=0.145  Sum_probs=159.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-c
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-Q   79 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~-~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~   79 (633)
                      +++++++|++|+.||.|++||+.+++.+..+..+ |...|.+++|+|++. +|++|+.||.|++||++.... +..+. .
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~  255 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVL-IRSWSFG  255 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEE-EEEEBCT
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccE-EEEEecC
Confidence            4578999999999999999999999999999875 667899999999987 899999999999999998764 44444 7


Q ss_pred             CCCCeEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeeEee---------------------------CCCCeEEE
Q 006743           80 HSAPTAGISFSS----DDKIIASVGLDKKLYTYDPGSRRPSSCIT---------------------------YEAPFSSL  128 (633)
Q Consensus        80 H~~~VtsLafSP----dg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------------------------h~~~ItsL  128 (633)
                      |...|.+++|+|    ++.+|++++.|+.|++||+++++++..+.                           |...|.++
T Consensus       256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l  335 (437)
T 3gre_A          256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI  335 (437)
T ss_dssp             TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred             CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence            888999997765    67799999999999999999988766553                           45568899


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-----------------------------------CCCCCeeEE
Q 006743          129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-----------------------------------SSSEAVSSL  173 (633)
Q Consensus       129 afSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~-----------------------------------~H~~~VtsL  173 (633)
                      +|+ ++.+|++|+.||.|++||+++.+. ...+...                                   .|...|+++
T Consensus       336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i  413 (437)
T 3gre_A          336 SVS-NDKILLTDEATSSIVMFSLNELSS-SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI  413 (437)
T ss_dssp             EEE-TTEEEEEEGGGTEEEEEETTCGGG-CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred             EEC-CceEEEecCCCCeEEEEECCCccc-ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence            999 779999999999999999998743 3333311                                   288889999


Q ss_pred             EEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       174 afsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +|.++          .++.++++++.||.|+||.
T Consensus       414 ~~~~~----------~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          414 STCEV----------DETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEES----------SSSEEEEEEETTSCEEEEC
T ss_pred             eeecc----------CCceEEEEEcCCceEEEeC
Confidence            98873          2467888889999999995

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=6.5e-23  Score=217.17  Aligned_cols=194  Identities=11%  Similarity=0.172  Sum_probs=153.7

Q ss_pred             CccCCC--CEEEEEECCCcEEEEECCCCcee---------------------------------------EEEeCCCCCc
Q 006743            1 MYNCKD--EHLASISLSGDLILHNLASGAKA---------------------------------------AELKDPNEQV   39 (633)
Q Consensus         1 AFSpdG--~~LaSgs~DG~I~IWDl~tgk~v---------------------------------------~~~~~~~~~~   39 (633)
                      +|+|++  .+|++++.||.|++||+.+++..                                       ..+...|...
T Consensus       100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            478888  79999999999999998764331                                       1333457788


Q ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-------EeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 006743           40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-------WLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPG  111 (633)
Q Consensus        40 VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~-------~l~~H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlr  111 (633)
                      |.+++|+|+++ +|++| .|+.|+|||+........       .+..|...|++++|+|++ ++|++|+.|+.|++||++
T Consensus       180 v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             eEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            89999999988 78888 899999999984432233       256899999999999988 999999999999999999


Q ss_pred             CCce----eeEe-eCCC------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC-----
Q 006743          112 SRRP----SSCI-TYEA------------PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA-----  169 (633)
Q Consensus       112 tgk~----v~~i-~h~~------------~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~-----  169 (633)
                      +++.    +..+ .+..            .|.+++|+|++++|++++. +.|+|||+++..+++..+.  +|...     
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--~~~~~~~~l~  334 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--VHEYLRSKLC  334 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--SCGGGTTTHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee--cccccccccc
Confidence            9876    4555 3444            8999999999999999999 9999999997445666665  45432     


Q ss_pred             ----------eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          170 ----------VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       170 ----------VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                                +..++|+|++++            |++++.|+.|++||+...
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~------------l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSV------------VMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSE------------EEEECSTTEEEEEETTTC
T ss_pred             ccccccccccceEEEECCCCCE------------EEEeccCCEEEEEEcCCC
Confidence                      334899996544            455678999999999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.90  E-value=6.9e-22  Score=200.78  Aligned_cols=195  Identities=15%  Similarity=0.169  Sum_probs=161.9

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCCCc-----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743            1 MYNCK-DEHLASISLSGDLILHNLASGA-----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpd-G~~LaSgs~DG~I~IWDl~tgk-----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      +|+|+ +++|++|+.||.|+|||+.+.+     ....+.+ |...|.+++|+|+++ +|++|+.|+.|++|+...... .
T Consensus        45 ~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~~~-~  121 (340)
T 4aow_A           45 ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTT-T  121 (340)
T ss_dssp             EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-E
T ss_pred             EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCC-EEEEEcccccceEEeecccce-e
Confidence            58887 6899999999999999997654     3445554 678899999999998 899999999999999988774 4


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCC--CEEEEEEcCCeEEEEE
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDD--WILTAGTSNGRVVFYD  150 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG--~~LatGs~DGsV~IWD  150 (633)
                      .....+...+..+.+++++++|++++.|+.+++||+.........  .|...+.+++|++++  .++++++.|+.|++||
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d  201 (340)
T 4aow_A          122 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN  201 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred             eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence            556678889999999999999999999999999999876554433  578899999999864  6788999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +++. +....+.  +|.+.|++++|+|+++            ++++++.|+.|++||++....
T Consensus       202 ~~~~-~~~~~~~--~h~~~v~~~~~s~~~~------------~l~s~s~Dg~i~iwd~~~~~~  249 (340)
T 4aow_A          202 LANC-KLKTNHI--GHTGYLNTVTVSPDGS------------LCASGGKDGQAMLWDLNEGKH  249 (340)
T ss_dssp             TTTT-EEEEEEC--CCSSCEEEEEECTTSS------------EEEEEETTCEEEEEETTTTEE
T ss_pred             CCCC-ceeeEec--CCCCcEEEEEECCCCC------------EEEEEeCCCeEEEEEeccCce
Confidence            9987 3344444  7999999999999654            455567899999999975443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.8e-22  Score=208.10  Aligned_cols=191  Identities=14%  Similarity=0.108  Sum_probs=147.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECC---------CCceeEEEeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLA---------SGAKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~---------tgk~v~~~~~~~~~~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      |+|+   +++++.|+.|++|+..         +++.+..+...|...|.+++|+|  +++ +|++|+.||.|++||+++.
T Consensus        84 ~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~  159 (343)
T 3lrv_A           84 EHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDD  159 (343)
T ss_dssp             CCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSS
T ss_pred             eCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCC
Confidence            5665   8999999999999654         55556666655677899999999  887 8999999999999999988


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eEe-e-CCCCeEEEEEecCCCEEEEEEcCCeEE
Q 006743           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-T-YEAPFSSLAFIDDDWILTAGTSNGRVV  147 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~i-~-h~~~ItsLafSPdG~~LatGs~DGsV~  147 (633)
                      +........|...|.+++|+|++.+|++|+.|+.|++||+++++.+ ..+ . |...|.+++|+|++.+|++++ |+.|+
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~  238 (343)
T 3lrv_A          160 SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVV  238 (343)
T ss_dssp             CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEE
T ss_pred             cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEE
Confidence            7532222456668999999999999999999999999999998876 444 4 899999999999999999999 55999


Q ss_pred             EEECCCCCCceEEEee-cCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEeeC-CCeEEccCCCC
Q 006743          148 FYDIRGKPQPLTVLRA-CSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAV-GDSILMPDPLP  210 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~-~~H~~~V--tsLafsPdg~~Las~s~~sd~~lLlSgs~-Dg~IkIWDlr~  210 (633)
                      +||+++.... ..+.. ..|...+  .+++|+|++++|++            ++. |+.|++|++..
T Consensus       239 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~------------~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          239 CFDLRKDVGT-LAYPTYTIPEFKTGTVTYDIDDSGKNMIA------------YSNESNSLTIYKFDK  292 (343)
T ss_dssp             EEETTSSTTC-BSSCCCBC-----CCEEEEECTTSSEEEE------------EETTTTEEEEEEECT
T ss_pred             EEEcCCCCcc-eeecccccccccccceEEEECCCCCEEEE------------ecCCCCcEEEEEEcc
Confidence            9999987432 22211 1233334  36999997665544            355 88999998753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=1.5e-22  Score=206.24  Aligned_cols=192  Identities=11%  Similarity=0.070  Sum_probs=161.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCCceeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRSPKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl-~t~~~~v~~   76 (633)
                      +|+|++++|++++.||.|+|||+.+++   ....+. .|...|.+++|+|++..+|++|+.||.|++||+ .+..  ...
T Consensus        18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~   94 (342)
T 1yfq_A           18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS--FQA   94 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS--EEE
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc--eEe
Confidence            489999999999999999999998877   233344 367789999999997526899999999999999 8776  467


Q ss_pred             ecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeeEeeCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           77 LKQ--HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---------RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        77 l~~--H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---------gk~v~~i~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                      +..  |...|.+++|+| +++|++++.|+.|++||+++         ++++..+.+...|.+++|+|++  +++++.||.
T Consensus        95 ~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~  171 (342)
T 1yfq_A           95 LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQ  171 (342)
T ss_dssp             CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTE
T ss_pred             ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCe
Confidence            788  999999999999 99999999999999999998         7777777799999999999887  999999999


Q ss_pred             EEEEECCC-CCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          146 VVFYDIRG-KPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       146 V~IWDlrs-~~k~v~~l~~~~H~~~VtsLafsP-dg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      |++||+++ ........ ...|...|.+++|+| +++++            ++++.|+.|++||+...
T Consensus       172 i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l------------~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          172 VQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGY------------ACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEE------------EEEETTSEEEEEECCTT
T ss_pred             EEEEECCccccccceee-ecCCCCceeEEEECCCCCCEE------------EEEecCCcEEEEEEcCC
Confidence            99999998 54333332 336889999999999 76554            44467999999998654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=1.6e-21  Score=208.36  Aligned_cols=195  Identities=14%  Similarity=0.195  Sum_probs=159.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |+++ +.||+|. |++|+|||+.+++.+..+.. .|...|++|+|+|+++ +|++|+.||.|+|||+.+++. +..+.+|
T Consensus       113 wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~-~~~~~~h  188 (420)
T 4gga_A          113 WSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKR-LRNMTSH  188 (420)
T ss_dssp             ECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCC
T ss_pred             ECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcE-EEEEeCC
Confidence            6654 5777765 99999999999998887764 3567899999999998 899999999999999998874 6778999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~-v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ...|.++.|+  +.+|++|+.|+.+++||.+.... +..+ .|...+..+.|+|++.++++++.|+.|++||........
T Consensus       189 ~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~  266 (420)
T 4gga_A          189 SARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW  266 (420)
T ss_dssp             SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS
T ss_pred             CCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccc
Confidence            9999999886  78999999999999999987543 3333 689999999999999999999999999999998754321


Q ss_pred             -EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          159 -TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       159 -~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                       .......|...|.+++|+|.+..++.         ..+++.|+.|++||++..
T Consensus       267 ~~~~~~~~~~~~V~~~~~~p~~~~~la---------~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          267 VPLQTFTQHQGAVKAVAWCPWQSNVLA---------TGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CCSEEECCCSSCEEEEEECTTCTTEEE---------EEECTTTCEEEEEETTTT
T ss_pred             eeeeeecccCCceeeeeeCCCcccEEE---------EEeecCCCEEEEEeCCcc
Confidence             11223378999999999996543322         234567999999998643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=1.3e-21  Score=235.42  Aligned_cols=181  Identities=19%  Similarity=0.270  Sum_probs=156.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg-~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|++++ ..++++|+.|+.|++||+.++.. +..+.+
T Consensus       664 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~  741 (1249)
T 3sfz_A          664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFG  741 (1249)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECC
T ss_pred             EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecC
Confidence            5899999999999999999999999999999986 66778999999953 34889999999999999998874 677889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe----------------------------------------
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----------------------------------------  119 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----------------------------------------  119 (633)
                      |...|++++|+|++++|++++.||.|++||+++++....+                                        
T Consensus       742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v  821 (1249)
T 3sfz_A          742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV  821 (1249)
T ss_dssp             CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred             CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence            9999999999999999999999999999998765432221                                        


Q ss_pred             ----------------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 006743          120 ----------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       120 ----------------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~La  183 (633)
                                      .|...|.+++|+|++.++++++.||.|++||+.+. ..+..+.  +|...|++++|+|++++++
T Consensus       822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~--~h~~~v~~v~~spdg~~l~  898 (1249)
T 3sfz_A          822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCR--GHLSWVHGVMFSPDGSSFL  898 (1249)
T ss_dssp             EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEEC--CCSSCEEEEEECTTSSEEE
T ss_pred             EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecC--CCccceEEEEECCCCCEEE
Confidence                            35678899999999999999999999999999986 3334444  8999999999999888777


Q ss_pred             Eec
Q 006743          184 DET  186 (633)
Q Consensus       184 s~s  186 (633)
                      +++
T Consensus       899 s~s  901 (1249)
T 3sfz_A          899 TAS  901 (1249)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            663

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.89  E-value=6.8e-22  Score=211.92  Aligned_cols=190  Identities=13%  Similarity=0.191  Sum_probs=159.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      +..++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|++++  +|++|+.||+|++||+.+++. +..+.+|.
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~-~~~~~~h~  203 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCC-THVFEGHN  203 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEE-EEEECCCS
T ss_pred             EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeC-CCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcE-EEEECCCC
Confidence            345788999999999999999999999999886 67788999999886  799999999999999998874 67788999


Q ss_pred             CCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCcee-----------------------eE-eeCCCCeEEEEEecCCC
Q 006743           82 APTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPS-----------------------SC-ITYEAPFSSLAFIDDDW  135 (633)
Q Consensus        82 ~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtgk~v-----------------------~~-i~h~~~ItsLafSPdG~  135 (633)
                      ..|.+++|++  ++++|++++.|+.|++||++++...                       .. ..|...|.++  ++++.
T Consensus       204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~  281 (464)
T 3v7d_B          204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN  281 (464)
T ss_dssp             SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT
T ss_pred             CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC
Confidence            9999999984  7899999999999999999876532                       12 2466777766  67799


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       136 ~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      +|++|+.||.|++||+++. +++..+.  +|...|.+++|+|++++            +++++.|+.|++||++...
T Consensus       282 ~l~~~~~d~~i~vwd~~~~-~~~~~~~--~~~~~v~~~~~~~~~~~------------l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          282 IVVSGSYDNTLIVWDVAQM-KCLYILS--GHTDRIYSTIYDHERKR------------CISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             EEEEEETTSCEEEEETTTT-EEEEEEC--CCSSCEEEEEEETTTTE------------EEEEETTSCEEEEETTTTE
T ss_pred             EEEEEeCCCeEEEEECCCC-cEEEEec--CCCCCEEEEEEcCCCCE------------EEEEeCCCcEEEEECCCCc
Confidence            9999999999999999986 3444444  79999999999996554            4556789999999997543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.8e-22  Score=232.07  Aligned_cols=200  Identities=12%  Similarity=0.169  Sum_probs=166.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC--CCceeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCc-eeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSP-KVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~--tgk~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~~-~v~   75 (633)
                      +|+|+|++|++|+.||.|+|||+.  +++.+..+.+ |...|.+++|+++  ++ +|++|+.||.|++||+.++.. .+.
T Consensus        16 ~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~vwd~~~~~~~~~~   93 (753)
T 3jro_A           16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIA   93 (753)
T ss_dssp             CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCS-EEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EECCCCCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCC-EEEEEeCCCeEEEEECCCCcccccc
Confidence            589999999999999999999997  4456666765 6778999999987  66 899999999999999987651 356


Q ss_pred             EeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCce---eeEeeCCCCeEEEEEec-------------CCCEE
Q 006743           76 WLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFID-------------DDWIL  137 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~---v~~i~h~~~ItsLafSP-------------dG~~L  137 (633)
                      .+..|...|++++|+|+  +++|++|+.||.|++||++++..   .....|...|.+++|+|             ++.+|
T Consensus        94 ~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l  173 (753)
T 3jro_A           94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (753)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred             cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence            67889999999999998  99999999999999999998733   23336889999999999             58999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~-l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ++|+.||.|++||+++....... ....+|...|++++|+|++         ..+.++++++.|+.|++||++..
T Consensus       174 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---------~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------LLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------SSSEEEEEEESSSCEEEEEESSS
T ss_pred             EEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC---------CCCCEEEEEecCCEEEEecCCCC
Confidence            99999999999999886543222 2233799999999999951         01566777788999999999764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.1e-22  Score=213.41  Aligned_cols=197  Identities=15%  Similarity=0.157  Sum_probs=159.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCC------------------------------------------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDP------------------------------------------   35 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk---~v~~~~~~------------------------------------------   35 (633)
                      +|+++|++|+++ .++.|++||+.+++   .+..+..+                                          
T Consensus        11 ~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (450)
T 2vdu_B           11 LTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAA   89 (450)
T ss_dssp             EECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------------
T ss_pred             EecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCc
Confidence            479999966655 57899999999998   66555432                                          


Q ss_pred             -----------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC--CCCceeEEec--cCCCCeEEEEEcCCCCEEEEEe
Q 006743           36 -----------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--GRSPKVSWLK--QHSAPTAGISFSSDDKIIASVG  100 (633)
Q Consensus        36 -----------~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~--t~~~~v~~l~--~H~~~VtsLafSPdg~~LaSgS  100 (633)
                                 +...|.+++|+|+++.++++|+.||.|+|||+.  ++.. +..+.  .|...|++++|+|++++|++++
T Consensus        90 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  168 (450)
T 2vdu_B           90 KVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDTTVIIAD  168 (450)
T ss_dssp             ----------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCCEEEEEe
Confidence                       122589999999998446899999999999998  6654 44454  6778999999999999999999


Q ss_pred             CCCeEEEEeCCCCceee----E-eeCCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeE
Q 006743          101 LDKKLYTYDPGSRRPSS----C-ITYEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSS  172 (633)
Q Consensus       101 ~DGtVrIWDlrtgk~v~----~-i~h~~~ItsLafSPd---G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~Vts  172 (633)
                      .|+.|++||+.+++...    . ..|...|.+++|+|+   +++|++|+.|+.|++||+++... +..+ ..+|...|.+
T Consensus       169 ~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~-~~~h~~~v~~  246 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-VDKW-LFGHKHFVSS  246 (450)
T ss_dssp             TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC-EEEE-CCCCSSCEEE
T ss_pred             CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce-eeee-ecCCCCceEE
Confidence            99999999998876543    3 368999999999999   99999999999999999998743 3321 2379999999


Q ss_pred             EEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          173 LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       173 LafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      ++|+ ++++|+++            +.|+.|++||++.....
T Consensus       247 ~~~s-d~~~l~s~------------~~d~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          247 ICCG-KDYLLLSA------------GGDDKIFAWDWKTGKNL  275 (450)
T ss_dssp             EEEC-STTEEEEE------------ESSSEEEEEETTTCCEE
T ss_pred             EEEC-CCCEEEEE------------eCCCeEEEEECCCCcEe
Confidence            9998 76665544            67999999999765543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.89  E-value=1.7e-21  Score=208.85  Aligned_cols=189  Identities=20%  Similarity=0.234  Sum_probs=161.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCCce-----
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRSPK-----   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~~~~-----   73 (633)
                      +|++++ +|++|+.||.|++||+.+++.+..+.+ |...|.+++|++  ++ .+|++|+.||.|++||+......     
T Consensus       169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~  245 (464)
T 3v7d_B          169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGE  245 (464)
T ss_dssp             EECSTT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC-----
T ss_pred             EEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccc
Confidence            367777 999999999999999999999888876 677889999985  44 48999999999999999766532     


Q ss_pred             -----------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCC
Q 006743           74 -----------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW  135 (633)
Q Consensus        74 -----------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~  135 (633)
                                       +..+.+|...|.++  ++++++|++++.|+.|++||+++++++..+ .|...|.+++|+|++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  323 (464)
T 3v7d_B          246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK  323 (464)
T ss_dssp             -CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT
T ss_pred             cCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC
Confidence                             45677899999887  467999999999999999999999988777 5899999999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       136 ~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +|++|+.||.|++||++++ +++..+.  +|...|.+++|++              .++++++.|+.|++||++..
T Consensus       324 ~l~sg~~dg~i~vwd~~~~-~~~~~~~--~h~~~v~~~~~~~--------------~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          324 RCISASMDTTIRIWDLENG-ELMYTLQ--GHTALVGLLRLSD--------------KFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             EEEEEETTSCEEEEETTTT-EEEEEEC--CCSSCEEEEEECS--------------SEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEeCCCcEEEEECCCC-cEEEEEe--CCCCcEEEEEEcC--------------CEEEEEeCCCcEEEEECCCC
Confidence            9999999999999999987 4445454  7999999999863              35677788999999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.8e-22  Score=214.26  Aligned_cols=194  Identities=12%  Similarity=0.079  Sum_probs=160.7

Q ss_pred             CccCCCCEE-EEEECCCcEEEEECC--CCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 006743            1 MYNCKDEHL-ASISLSGDLILHNLA--SGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---   73 (633)
Q Consensus         1 AFSpdG~~L-aSgs~DG~I~IWDl~--tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~---   73 (633)
                      +|+|+|++| ++|+.||.|+|||+.  +++.+..+.. .+...|.+++|+|++. +|++|+.||.|++|++......   
T Consensus       109 ~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~  187 (450)
T 2vdu_B          109 RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEKFT  187 (450)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTSCCCSSCC
T ss_pred             EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-EEEEEeCCCcEEEEecCCccccccc
Confidence            489999996 889999999999998  8888877753 2567789999999998 8999999999999999766531   


Q ss_pred             eEEeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           74 VSWLKQHSAPTAGISFSSD---DKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPd---g~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      ...+.+|...|++++|+|+   +++|++++.|+.|++||+++++.+..+  .|...|.+++|+ ++++|++|+.|+.|++
T Consensus       188 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~v  266 (450)
T 2vdu_B          188 QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFA  266 (450)
T ss_dssp             CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEE
T ss_pred             ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEE
Confidence            2356789999999999999   999999999999999999998877663  689999999999 9999999999999999


Q ss_pred             EECCCCCCceEEEeec-----------------------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEc
Q 006743          149 YDIRGKPQPLTVLRAC-----------------------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~-----------------------~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkI  205 (633)
                      ||+++++ ++..+...                       .....|.+++|+|++++++++           +..|+.|++
T Consensus       267 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----------~~~d~~i~i  334 (450)
T 2vdu_B          267 WDWKTGK-NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF-----------VEATKCIII  334 (450)
T ss_dssp             EETTTCC-EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE-----------ETTCSEEEE
T ss_pred             EECCCCc-EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE-----------ECCCCeEEE
Confidence            9999874 34444311                       234568899999865554433           226899999


Q ss_pred             cCC
Q 006743          206 PDP  208 (633)
Q Consensus       206 WDl  208 (633)
                      ||+
T Consensus       335 w~~  337 (450)
T 2vdu_B          335 LEM  337 (450)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.1e-21  Score=191.09  Aligned_cols=184  Identities=12%  Similarity=0.103  Sum_probs=154.5

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCCceeEEecc-CCC
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HSA   82 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSp-dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~-H~~   82 (633)
                      ++++|++++.||.|++||  .++.+..+.. +...+.+++|.+ ++. +|++++.||.|++||..  . ....+.. |..
T Consensus       113 ~~~~l~~~~~d~~i~~~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~d~~--~-~~~~~~~~~~~  185 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWK--EGSLVYNLQA-HNASVWDAKVVSFSEN-KFLTASADKTIKLWQND--K-VIKTFSGIHND  185 (313)
T ss_dssp             ETTEEEEEETTSEEEEEE--TTEEEEEEEC-CSSCEEEEEEEETTTT-EEEEEETTSCEEEEETT--E-EEEEECSSCSS
T ss_pred             cCCEEEEEeCCCCEEEEc--CCcEEEeccc-CCCceeEEEEccCCCC-EEEEEECCCCEEEEecC--c-eEEEEeccCcc
Confidence            578999999999999999  6677777776 667788899998 555 89999999999999943  2 2445555 999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l  161 (633)
                      .|.+++|+|++. +++++.|+.|++||+++++.+..+ .|...|.+++|+|++ .|++++.||.|++||+++. ++...+
T Consensus       186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~-~~~~~~  262 (313)
T 3odt_A          186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG-SLKQVI  262 (313)
T ss_dssp             CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC-CEEEEE
T ss_pred             cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC-ceeEEE
Confidence            999999999888 999999999999999999988777 489999999999999 6899999999999999987 444555


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .  .|...|.+++|+|+++             +++++.|+.|++||+.....
T Consensus       263 ~--~~~~~i~~~~~~~~~~-------------~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          263 T--LPAISIWSVDCMSNGD-------------IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             E--CSSSCEEEEEECTTSC-------------EEEEETTSCEEEEESCGGGC
T ss_pred             e--ccCceEEEEEEccCCC-------------EEEEeCCCcEEEEeCCCCce
Confidence            5  6888999999999643             33456799999999875433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.88  E-value=1e-21  Score=200.01  Aligned_cols=191  Identities=10%  Similarity=0.051  Sum_probs=155.7

Q ss_pred             CccCCCC-EEEEEECCCcEEEEEC-CCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Q 006743            1 MYNCKDE-HLASISLSGDLILHNL-ASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--------   69 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl-~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t--------   69 (633)
                      +|+++++ +|++|+.||.|++||+ .+++. ..+.. .|...|.+++|+| +. +|++++.|+.|++||++.        
T Consensus        63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             EECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccc
Confidence            4889999 9999999999999999 77755 44543 1677889999999 66 899999999999999976        


Q ss_pred             -CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Ccee---eEeeCCCCeEEEEEec-CCCEEEEEEcC
Q 006743           70 -RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPS---SCITYEAPFSSLAFID-DDWILTAGTSN  143 (633)
Q Consensus        70 -~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt-gk~v---~~i~h~~~ItsLafSP-dG~~LatGs~D  143 (633)
                       .+. +..+. |...|.+++|++++  +++++.|+.|++||+++ +...   ....+...|.+++|+| ++++|++++.|
T Consensus       140 ~~~~-~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          140 KNLN-SNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             EESC-SSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             cCCe-eeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC
Confidence             442 23333 88999999999876  99999999999999998 5432   2235788999999999 99999999999


Q ss_pred             CeEEEEECCCC-----CCceEEEeecCC---------CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          144 GRVVFYDIRGK-----PQPLTVLRACSS---------SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       144 GsV~IWDlrs~-----~k~v~~l~~~~H---------~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |.|++||++..     .+....+.  .|         ...|.+++|+|++++|            ++++.|+.|++||+.
T Consensus       216 g~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l------------~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          216 GRVAVEFFDDQGDDYNSSKRFAFR--CHRLNLKDTNLAYPVNSIEFSPRHKFL------------YTAGSDGIISCWNLQ  281 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEE--CCCCCTTCCSSCCCEEEEEECTTTCCE------------EEEETTSCEEEEETT
T ss_pred             CcEEEEEEcCCCcccccccceeee--cccccccccccceeEEEEEEcCCCCEE------------EEecCCceEEEEcCc
Confidence            99999999876     35566666  45         4499999999965554            445679999999986


Q ss_pred             CCC
Q 006743          210 PSV  212 (633)
Q Consensus       210 ~~~  212 (633)
                      ...
T Consensus       282 ~~~  284 (342)
T 1yfq_A          282 TRK  284 (342)
T ss_dssp             TTE
T ss_pred             cHh
Confidence            543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.5e-22  Score=232.84  Aligned_cols=192  Identities=9%  Similarity=0.078  Sum_probs=157.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++||+|+.||.|+|||..+.+....+.  +...|.+|+|+| ++ +|++++.|++|+|||+.+++. +..+. |
T Consensus        24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~-~~~~~-~   97 (902)
T 2oaj_A           24 AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKV-LTTVF-V   97 (902)
T ss_dssp             EEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSE-EEEEE-C
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcE-EEEEc-C
Confidence            589999999999999999999987776655443  567899999999 76 899999999999999998774 44443 7


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-----------E-eeCCCCeEEEEEecC-CCEEEEEEcCCeEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-----------C-ITYEAPFSSLAFIDD-DWILTAGTSNGRVV  147 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-----------~-i~h~~~ItsLafSPd-G~~LatGs~DGsV~  147 (633)
                      ...|++++|+|++++|++|+.||.|++||++++++..           . ..|.+.|.+++|+|+ +.+|++|+.||.| 
T Consensus        98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-  176 (902)
T 2oaj_A           98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-  176 (902)
T ss_dssp             SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred             CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence            7899999999999999999999999999999887531           1 247889999999996 5789999999999 


Q ss_pred             EEECCCCCCceEEEeec----------------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          148 FYDIRGKPQPLTVLRAC----------------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~----------------~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +||+++. +++..+...                .|...|++++|+|+|+            +|++++.|+.|++||++..
T Consensus       177 lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~------------~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          177 TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL------------HIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS------------EEEEEETTCCEEEEETTTC
T ss_pred             EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC------------EEEEEECCCeEEEEECCCC
Confidence            9999987 344444421                2357899999999654            4555678999999999754


Q ss_pred             C
Q 006743          212 V  212 (633)
Q Consensus       212 ~  212 (633)
                      .
T Consensus       244 ~  244 (902)
T 2oaj_A          244 H  244 (902)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=5.9e-21  Score=191.17  Aligned_cols=186  Identities=13%  Similarity=0.140  Sum_probs=154.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC---ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tg---k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+|++++|++++.||.|++|++.+.   +.+..+.. |...|.+++|  +++ +|++++.||.|++||  ... ....+
T Consensus        66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~-~l~~~~~d~~i~~~d--~~~-~~~~~  138 (313)
T 3odt_A           66 CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSF--QDG-VVISGSWDKTAKVWK--EGS-LVYNL  138 (313)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEE--ETT-EEEEEETTSEEEEEE--TTE-EEEEE
T ss_pred             EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh-cccCEEEEEe--cCC-EEEEEeCCCCEEEEc--CCc-EEEec
Confidence            48999999999999999999998764   44566654 6677888999  344 899999999999999  222 46778


Q ss_pred             ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           78 KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        78 ~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      ..|...|.+++|.| ++++|++++.|+.|++||.  ++....+  .+...+.+++|+|++. +++++.||.|++||+++.
T Consensus       139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~  215 (313)
T 3odt_A          139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG  215 (313)
T ss_dssp             ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred             ccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence            88999999999999 9999999999999999994  3444444  3889999999999998 999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                       +++..+.  .|...|++++|+|++             .+++++.|+.|++||++...
T Consensus       216 -~~~~~~~--~~~~~i~~~~~~~~~-------------~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          216 -DVLRTYE--GHESFVYCIKLLPNG-------------DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             -CEEEEEE--CCSSCEEEEEECTTS-------------CEEEEETTSEEEEECTTTCC
T ss_pred             -hhhhhhh--cCCceEEEEEEecCC-------------CEEEEecCCEEEEEECCCCc
Confidence             4445555  799999999999964             25566779999999987644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=2.2e-21  Score=213.11  Aligned_cols=193  Identities=14%  Similarity=0.155  Sum_probs=162.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC----ceeEEEeCCCCCc-EEEEEEcc--CCCeEEEEEeCCCeEEEEECCCC---
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQV-LRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGR---   70 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tg----k~v~~~~~~~~~~-VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~---   70 (633)
                      +|+|+|++|++++ ++.|+|||+.++    +....+.+ |... |.+++|+|  +++ +|++|+.||.|+|||+.++   
T Consensus        25 ~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~  101 (615)
T 1pgu_A           25 SYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKES  101 (615)
T ss_dssp             EEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGG
T ss_pred             EECCCCCEEEEec-CCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCccc
Confidence            5899999999998 889999999988    88888886 5566 99999999  987 8999999999999999643   


Q ss_pred             ----CceeEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCC-EEEEE
Q 006743           71 ----SPKVSWLKQHSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAG  140 (633)
Q Consensus        71 ----~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D----GtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~-~LatG  140 (633)
                          ......+..|...|.+++|+|++++|++++.+    +.|++||  .++.+..+ .|...|.+++|+|++. +++++
T Consensus       102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  179 (615)
T 1pgu_A          102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTV  179 (615)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEE
Confidence                22356777899999999999999999999988    6899998  44555554 6899999999999997 89999


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccC-CCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          141 TSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRA-KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       141 s~DGsV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafsPd-g~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +.||.|++||+++. +.+..+.  +|..   .|++++|+|+ ++            ++++++.|+.|++||++....
T Consensus       180 ~~d~~v~vwd~~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~~------------~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          180 GDDGSVVFYQGPPF-KFSASDR--THHKQGSFVRDVEFSPDSGE------------FVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             ETTTEEEEEETTTB-EEEEEEC--SSSCTTCCEEEEEECSTTCC------------EEEEEETTCCEEEEETTTCCE
T ss_pred             eCCCcEEEEeCCCc-ceeeeec--ccCCCCceEEEEEECCCCCC------------EEEEEeCCCeEEEEECCCCCE
Confidence            99999999999876 3344444  6888   9999999996 44            455557799999999875543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=3e-21  Score=212.03  Aligned_cols=187  Identities=14%  Similarity=0.206  Sum_probs=156.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~-DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |+++|.+++++ .++.+.+|++.+++.+..+.  +...+.+++|+  ++ +|++++. |+.|++||+.+.......+..|
T Consensus       414 ~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~-~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~  487 (615)
T 1pgu_A          414 ANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR--LNSPGSAVSLS--QN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPL  487 (615)
T ss_dssp             ECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC--SS-EEEEEETTTSCEEEEETTEEEEEEECSSCC
T ss_pred             EcCCCCEEEEe-CCCceEEEeccCCceeeecc--cCCCceEEEEc--CC-EEEEeecCCCeEEEEECCCccccccccCCc
Confidence            45566555544 56666666666777777776  56778899999  55 8999999 9999999998765322567789


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEec----------CCCEEEEEEcCCeEEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFID----------DDWILTAGTSNGRVVF  148 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSP----------dG~~LatGs~DGsV~I  148 (633)
                      ...|++++|+|++++|++++.|+.|++||+.+++.+..+.  |...|.+++|+|          ++++|++++.||.|++
T Consensus       488 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i  567 (615)
T 1pgu_A          488 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  567 (615)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence            9999999999999999999999999999999999887763  899999999999          9999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ||+++..+++..+.  +|...|++++|+|+            +. |++++.|+.|++||+.
T Consensus       568 w~~~~~~~~~~~~~--~h~~~v~~l~~s~~------------~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          568 YSVKRPMKIIKALN--AHKDGVNNLLWETP------------ST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EESSCTTCCEEETT--SSTTCEEEEEEEET------------TE-EEEEETTSCEEEEEEC
T ss_pred             EECCCCceechhhh--cCccceEEEEEcCC------------CC-eEEecCCceEEEEeee
Confidence            99998755555554  89999999999995            34 6666889999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.1e-22  Score=220.42  Aligned_cols=196  Identities=9%  Similarity=0.052  Sum_probs=142.2

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCcee----EEEeCCCCCcEEEEEEccCC-----CeEEEEEeCCCeEEEEECCCCCce
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKA----AELKDPNEQVLRVLDYSRNS-----RHLLVTAGDDGTLHLWDTTGRSPK   73 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v----~~~~~~~~~~VssLafSpdg-----~~lLaSGs~DGtI~IWDl~t~~~~   73 (633)
                      +|+++.|++++.|+.|+|||+.+++..    ..+. ++...|..|+|+|++     ..+|++++.||+|+|||+......
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~  248 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD  248 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence            345556666778999999999877643    2233 456778999999972     238999999999999999765321


Q ss_pred             ----------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEE--EEecCC-CEEE
Q 006743           74 ----------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSL--AFIDDD-WILT  138 (633)
Q Consensus        74 ----------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v~~i-~h~~~ItsL--afSPdG-~~La  138 (633)
                                ...+.+|...|++++|+++ ..|++|+.||+|++||++++. +...+ .|...|.++  +|+|++ .+|+
T Consensus       249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred             cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence                      2467889999999999985 489999999999999999764 33333 699999999  578888 8999


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +|+.||+|+|||+++.. +...+........|.+++|+|+++.            +++++.|+.|++||++....
T Consensus       328 S~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~~v~fsp~~~~------------l~s~~~d~tv~lwd~~~~~~  389 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLVPVVYCPQIYS------------YIYSDGASSLRAVPSRAAFA  389 (524)
T ss_dssp             EEETTSEEEEECGGGHH-HHCEEEEECSCCSCCCEEEETTTTE------------EEEECSSSEEEEEETTCTTC
T ss_pred             EeccCCeEEEEECCCCC-cccccccccccCcccceEeCCCcCe------------EEEeCCCCcEEEEECccccc
Confidence            99999999999999863 3333432122235889999996544            44556789999999987554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.88  E-value=1.1e-20  Score=202.34  Aligned_cols=181  Identities=19%  Similarity=0.315  Sum_probs=154.3

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--eEEeccCC
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--VSWLKQHS   81 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--v~~l~~H~   81 (633)
                      .++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|++  . +|++|+.||.|++||+.+....  ...+.+|.
T Consensus       181 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  256 (435)
T 1p22_A          181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  256 (435)
T ss_dssp             CCSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEECCT--T-EEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred             ECCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCC
Confidence            4788999999999999999999999988876 667788899974  3 8999999999999999876643  26678999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..|.+++|  ++++|++|+.|+.|++||+++++.+..+ .|...|.+++|+  +.+|++|+.||.|++||++++ +++..
T Consensus       257 ~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~-~~~~~  331 (435)
T 1p22_A          257 AAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRV  331 (435)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEE
T ss_pred             CcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC-CEEEE
Confidence            99999999  6899999999999999999999988777 588999999995  789999999999999999987 44455


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +.  +|...|.+++|  ++            .++++++.|+.|++||++
T Consensus       332 ~~--~h~~~v~~~~~--~~------------~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          332 LE--GHEELVRCIRF--DN------------KRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             EC--CCSSCEEEEEC--CS------------SEEEEEETTSCEEEEEHH
T ss_pred             Ee--CCcCcEEEEEe--cC------------CEEEEEeCCCcEEEEECC
Confidence            54  79999999998  32            345666778888888875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.4e-21  Score=224.23  Aligned_cols=196  Identities=13%  Similarity=0.180  Sum_probs=161.9

Q ss_pred             CccCC--CCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ce
Q 006743            1 MYNCK--DEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PK   73 (633)
Q Consensus         1 AFSpd--G~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~-~~   73 (633)
                      +|+++  +++|++|+.||.|++||+.+++  .+..+.. |...|.+++|+|+  +. +|++|+.||.|++||+.... ..
T Consensus        60 ~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~  137 (753)
T 3jro_A           60 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS  137 (753)
T ss_dssp             EECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC
T ss_pred             EecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC-CCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc
Confidence            36777  9999999999999999998886  5555554 6778999999999  76 89999999999999998763 23


Q ss_pred             eEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEeCCCCc----eeeEe-eCCCCeEEEEEecC--
Q 006743           74 VSWLKQHSAPTAGISFSS-------------DDKIIASVGLDKKLYTYDPGSRR----PSSCI-TYEAPFSSLAFIDD--  133 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSP-------------dg~~LaSgS~DGtVrIWDlrtgk----~v~~i-~h~~~ItsLafSPd--  133 (633)
                      ...+..|...|.+++|+|             ++.+|++|+.||.|++||++++.    +...+ .|...|.+++|+|+  
T Consensus       138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  217 (753)
T 3jro_A          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (753)
T ss_dssp             CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence            456778999999999999             58999999999999999998874    33333 58999999999999  


Q ss_pred             -CCEEEEEEcCCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          134 -DWILTAGTSNGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       134 -G~~LatGs~DGsV~IWDlrs~~k~v--~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                       +.+|++|+.||.|++||+++.....  .......|...|++++|+|+++++            ++++.|+.|++||+..
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l------------~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL------------ALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE------------EEECSSSCEECCBCCS
T ss_pred             CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE------------EEEcCCCEEEEEecCC
Confidence             8999999999999999999863211  222333688999999999966555            4446799999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.87  E-value=8.6e-21  Score=217.03  Aligned_cols=196  Identities=15%  Similarity=0.242  Sum_probs=170.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++++.||.|++||+.+.......+..|
T Consensus        62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  139 (814)
T 3mkq_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (814)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence            4899999999999999999999999999998886 667789999999998 79999999999999998875557788899


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEec--CCCEEEEEEcCCeEEEEECCCCC
Q 006743           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFID--DDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSP--dG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      ...|.+++|+| ++++|++++.||.|++||++++.....+.  +...+.+++|+|  ++.+|++++.||.|++||+++. 
T Consensus       140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-  218 (814)
T 3mkq_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-  218 (814)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred             CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence            99999999999 89999999999999999999887766653  448899999999  9999999999999999999887 


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .++..+.  +|...|.+++|+|++++            +++++.|+.|++||+.....
T Consensus       219 ~~~~~~~--~~~~~v~~~~~~~~~~~------------l~~~~~dg~v~vwd~~~~~~  262 (814)
T 3mkq_A          219 SCVATLE--GHMSNVSFAVFHPTLPI------------IISGSEDGTLKIWNSSTYKV  262 (814)
T ss_dssp             EEEEEEE--CCSSCEEEEEECSSSSE------------EEEEETTSCEEEEETTTCSE
T ss_pred             cEEEEEc--CCCCCEEEEEEcCCCCE------------EEEEeCCCeEEEEECCCCcE
Confidence            3444444  79999999999996554            45557799999999876443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=1.6e-20  Score=201.25  Aligned_cols=185  Identities=14%  Similarity=0.267  Sum_probs=158.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      +..++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|  +++ +|++|+.||.|++||+.+++. +..+..|.
T Consensus       139 ~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~  213 (435)
T 1p22_A          139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DER-VIITGSSDSTVRVWDVNTGEM-LNTLIHHC  213 (435)
T ss_dssp             EECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSS-EEEEEETTSCEEEEESSSCCE-EEEECCCC
T ss_pred             EEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCCCcE-EEEEcCCC
Confidence            456899999999999999999999999998886 6677888888  555 899999999999999998874 67788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---eEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS---SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v---~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      ..|.+++|+  +.+|++|+.|+.|++||++++...   ..+ .|...|.+++|  ++++|++|+.||.|++||+++. +.
T Consensus       214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~  288 (435)
T 1p22_A          214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EF  288 (435)
T ss_dssp             SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CE
T ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cE
Confidence            999999997  569999999999999999987755   222 68899999999  6889999999999999999987 44


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      +..+.  +|...|.+++|+.              .++++++.|+.|++||++...
T Consensus       289 ~~~~~--~~~~~v~~~~~~~--------------~~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          289 VRTLN--GHKRGIACLQYRD--------------RLVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             EEEEE--CCSSCEEEEEEET--------------TEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEc--CCCCcEEEEEeCC--------------CEEEEEeCCCeEEEEECCCCC
Confidence            55555  7999999999842              356777889999999997543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=1.8e-21  Score=207.12  Aligned_cols=207  Identities=12%  Similarity=0.112  Sum_probs=147.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEE--E--eCCCCCcEEEEEEcc--------CCCeEEEEEeCCCeEEEEECCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAE--L--KDPNEQVLRVLDYSR--------NSRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~--~--~~~~~~~VssLafSp--------dg~~lLaSGs~DGtI~IWDl~t   69 (633)
                      +.+++++|++|+.|++|+|||+.+++....  +  ..+|...|.+|+|+|        +++ +|++|+.|++|+|||+.+
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEET
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCC
Confidence            455677899999999999999988765432  1  134778899999998        555 899999999999999987


Q ss_pred             CCceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeE--------------------------eeCC
Q 006743           70 RSPKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSC--------------------------ITYE  122 (633)
Q Consensus        70 ~~~~v~~l~~H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlrtgk~v~~--------------------------i~h~  122 (633)
                      ..+ +..+..|...|.+++|+|++ ++|++++.|++|++||+++++....                          ..|.
T Consensus       176 ~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  254 (393)
T 4gq1_A          176 EGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA  254 (393)
T ss_dssp             TEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred             Cce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence            664 45667888999999999966 5899999999999999987654321                          1356


Q ss_pred             CCeEEEEEe-cCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE--------EeccCCCCeE
Q 006743          123 APFSSLAFI-DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI--------DETTCKAETA  193 (633)
Q Consensus       123 ~~ItsLafS-PdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~La--------s~s~~sd~~l  193 (633)
                      ..+.++.|. ++++.|++++.|+.|++||+..... ...+.  .|...+..+.+.|+.+.+.        ......++.+
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNEIS--DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF  331 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-CceEe--eecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence            678889987 7999999999999999999987632 22232  5667777777776544322        1112346677


Q ss_pred             EEEeeCCCeEEccCCCCCCC
Q 006743          194 LLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       194 LlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +++++.|+.|++||+.....
T Consensus       332 ~~sgs~Dg~V~lwd~~~~~~  351 (393)
T 4gq1_A          332 ATAHSQHGLIQLINTYEKDS  351 (393)
T ss_dssp             EEEETTTTEEEEEETTCTTC
T ss_pred             EEEECCCCEEEEEECCCCcE
Confidence            88888999999999865443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.87  E-value=9.8e-21  Score=198.80  Aligned_cols=192  Identities=12%  Similarity=0.119  Sum_probs=146.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|||++|++|+.+| ++|||+.+++.......   ..+..+++.++++.++++++.|++|+|||..+++. +..+. |
T Consensus        26 ~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~-~~~~~-~   99 (355)
T 3vu4_A           26 EFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD-VSRIK-V   99 (355)
T ss_dssp             EECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE-EEEEE-C
T ss_pred             EECCCCCEEEEEcCCE-EEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE-EEEEE-C
Confidence            5899999999988775 78999987776655442   13566788888875557788899999999988874 34443 6


Q ss_pred             CCCeEEEEEcCCC-----------------------------------CEEEE--EeCCCeEEEEeCCCCc---------
Q 006743           81 SAPTAGISFSSDD-----------------------------------KIIAS--VGLDKKLYTYDPGSRR---------  114 (633)
Q Consensus        81 ~~~VtsLafSPdg-----------------------------------~~LaS--gS~DGtVrIWDlrtgk---------  114 (633)
                      ...|.+++|+++.                                   .++++  |+.||.|++||+++++         
T Consensus       100 ~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~  179 (355)
T 3vu4_A          100 DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGV  179 (355)
T ss_dssp             SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-----------
T ss_pred             CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccc
Confidence            6789888887642                                   23444  5788899999998765         


Q ss_pred             --------eeeEeeCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          115 --------PSSCITYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       115 --------~v~~i~h~~~ItsLafSPdG~~LatGs~DGs-V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                              ......|...|.+++|+|+|++|++|+.||+ |+|||++++. ++..+....|...|.+++|+|++++    
T Consensus       180 ~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s~~~~~----  254 (355)
T 3vu4_A          180 QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWSTDGSK----  254 (355)
T ss_dssp             -------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-EEEEEECTTCCSCEEEEEECTTSCE----
T ss_pred             cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcCCCCCcEEEEEECCCCCE----
Confidence                    2233369999999999999999999999998 9999999874 3444442228999999999996554    


Q ss_pred             ccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          186 TTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       186 s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                              |++++.|+.|++||+...
T Consensus       255 --------l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          255 --------LAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             --------EEEEETTCEEEEEESSCC
T ss_pred             --------EEEEECCCEEEEEEccCC
Confidence                    555577999999999653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.87  E-value=2.2e-20  Score=200.07  Aligned_cols=187  Identities=16%  Similarity=0.191  Sum_probs=160.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      +.++|++|++|+.||.|++||+.+++.+..+.+ |...|.+++|+  +. +|++|+.||.|++||+.+++. +..+.+|.
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~-~~~~~~h~  199 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGEC-IHTLYGHT  199 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEE-EEEECCCS
T ss_pred             EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCcE-EEEECCCC
Confidence            567899999999999999999999999998886 66778889997  33 899999999999999988874 67788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ..|.+++|+  ++.|++|+.|+.|++||+++++.+..+ .|...|.+++|  ++.+|++|+.||.|++||+++. +++..
T Consensus       200 ~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~~  274 (445)
T 2ovr_B          200 STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLHT  274 (445)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EEEEE
T ss_pred             CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cEeEE
Confidence            999999996  678999999999999999999888776 58899999999  7889999999999999999887 34444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      +.  +|...|.+++|  +            +.++++++.|+.|++||++.....
T Consensus       275 ~~--~~~~~v~~~~~--~------------~~~l~~~~~d~~i~i~d~~~~~~~  312 (445)
T 2ovr_B          275 LQ--GHTNRVYSLQF--D------------GIHVVSGSLDTSIRVWDVETGNCI  312 (445)
T ss_dssp             EC--CCSSCEEEEEE--C------------SSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ec--CCCCceEEEEE--C------------CCEEEEEeCCCeEEEEECCCCCEE
Confidence            44  79999999998  3            235666678999999999765543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.87  E-value=8.6e-21  Score=201.71  Aligned_cols=174  Identities=12%  Similarity=0.129  Sum_probs=129.2

Q ss_pred             CCcEEEEEC-CCCceeEEEeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC---CCeEEE
Q 006743           15 SGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS---APTAGI   87 (633)
Q Consensus        15 DG~I~IWDl-~tgk~v~~~~~~~~~~VssLafSp---dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~---~~VtsL   87 (633)
                      |+.|++|++ .+++.+..+.. |...++.++|++   ++. +|++|+.|++|+|||+.+++. ++.+.+|.   ..|.++
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~-~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~v  232 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFL-MPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHK  232 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEE-CCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEE
T ss_pred             CCcEEEEEECCCCceeeeecc-CCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEE
Confidence            788888888 45776666665 445566678887   455 899999999999999999885 56666543   467888


Q ss_pred             EEcCCCCEE------------EEEeCCCeEEEEeCCCCceeeEe------eCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743           88 SFSSDDKII------------ASVGLDKKLYTYDPGSRRPSSCI------TYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (633)
Q Consensus        88 afSPdg~~L------------aSgS~DGtVrIWDlrtgk~v~~i------~h~~~ItsLafSPdG~~LatGs~DGsV~IW  149 (633)
                      +|+|++.++            ++|+.|++|++||..+++.+..+      +|...+.+..++  +.++++|+.||+|+||
T Consensus       233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIW  310 (356)
T 2w18_A          233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIW  310 (356)
T ss_dssp             EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEE
Confidence            999999886            56888999999999999887654      234444444444  8899999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCee-EEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          150 DIRGKPQPLTVLRACSSSEAVS-SLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~Vt-sLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      |+.++ +.+..+.  +|...+. +++|+|+|++            |++++.|++|+|||+
T Consensus       311 Dl~tG-k~l~tL~--gH~~~vvs~vafSPDG~~------------LaSGS~D~TIklWd~  355 (356)
T 2w18_A          311 DLLLG-QCTALLP--PVSDQHWSFVKWSGTDSH------------LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTTC-SEEEEEC--CC--CCCCEEEECSSSSE------------EEEECTTSCEEEEEE
T ss_pred             ECCCC-cEEEEec--CCCCCeEEEEEECCCCCE------------EEEEECCCcEEEecC
Confidence            99988 4555555  6776655 6899996555            455578999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=2.9e-21  Score=205.55  Aligned_cols=177  Identities=12%  Similarity=0.125  Sum_probs=129.1

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee----------
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV----------   74 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v----------   74 (633)
                      ||++||+|+.|++|+|||+.++..+..+..++ ..+.+++|+|++.++|++|+.||+|++||+++.+...          
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLS-SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN  233 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECS-SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCC-CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence            78999999999999999998888777776644 5677899999987789999999999999997665321          


Q ss_pred             --------------EEeccCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCC--------------
Q 006743           75 --------------SWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP--------------  124 (633)
Q Consensus        75 --------------~~l~~H~~~VtsLafS-Pdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~--------------  124 (633)
                                    ....+|...|.+++|. ++++.|++++.|+++++||+..++....+ .+...              
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  313 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS  313 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred             ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence                          1124678889999997 59999999999999999999876544333 12222              


Q ss_pred             ----eEEEEEec--CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          125 ----FSSLAFID--DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       125 ----ItsLafSP--dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                          .....|+|  ++.++++|+.||.|+|||+.++.... ...  .|..+|.+++|+|+|++|+++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~-~~~--~~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          314 LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS-IPI--QLGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE-EEE--ECSSCEEEEEECTTSSEEEEE
T ss_pred             ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE-Eec--CCCCcEEEEEEcCCCCEEEEE
Confidence                22233444  34466778889999999999875433 333  588899999999988777665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.86  E-value=6.3e-20  Score=184.48  Aligned_cols=197  Identities=15%  Similarity=0.199  Sum_probs=158.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|++++ +||+| .|++|+|||+.+++.+..+.. .|...|.+|+|+|+++ +|++|+.||+|+|||+++++. +..+.+
T Consensus        32 ~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~-~~~~~~  107 (318)
T 4ggc_A           32 DWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKR-LRNMTS  107 (318)
T ss_dssp             EECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-EEEEEC
T ss_pred             EECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCcee-EEEecC
Confidence            377765 67766 599999999999999888764 3567899999999998 899999999999999998874 677889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eE-eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SC-ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~-i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      |...+.++.+.  +..+++++.++.+++|+....... .. ..|...+.++.+.+++++|++++.||.|++||+++.+..
T Consensus       108 h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  185 (318)
T 4ggc_A          108 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  185 (318)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred             ccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence            99888876654  789999999999999999876443 33 368999999999999999999999999999999875422


Q ss_pred             e-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          158 L-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       158 v-~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      . .......|.+.|.++++.|++..++         .+.+++.++.|++||.+...
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~~~~~~~~i~lwd~~~~~  232 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVL---------ATGGGTSDRHIRIWNVCSGA  232 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEE---------EEEECTTTCEEEEEETTTCC
T ss_pred             ccceeeecccCCceEEEEecCCCCcEE---------EEEecCCCCEEEEEeccccc
Confidence            1 1222336888999999999644332         23556778999999986543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=3e-20  Score=195.09  Aligned_cols=195  Identities=11%  Similarity=0.104  Sum_probs=146.1

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC------------------------------
Q 006743            2 YNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR------------------------------   50 (633)
Q Consensus         2 FSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~------------------------------   50 (633)
                      |.++++.+ ++++.|+.|+|||+.+++.+..+.  +...|.+++|+++.-                              
T Consensus        66 ~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~  143 (355)
T 3vu4_A           66 MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC  143 (355)
T ss_dssp             ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred             EcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence            45667766 467788999999999999888886  345677787776420                              


Q ss_pred             ----eEEEE--EeCCCeEEEEECCCCC---------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEE
Q 006743           51 ----HLLVT--AGDDGTLHLWDTTGRS---------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK-LYTY  108 (633)
Q Consensus        51 ----~lLaS--Gs~DGtI~IWDl~t~~---------------~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGt-VrIW  108 (633)
                          .+++.  |+.||.|++||+.+..               +.+..+.+|...|++++|+|++++|++|+.|++ |++|
T Consensus       144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence                12333  5788899999987644               015678899999999999999999999999998 9999


Q ss_pred             eCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-ceEEEee------c-------------C
Q 006743          109 DPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-PLTVLRA------C-------------S  165 (633)
Q Consensus       109 Dlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k-~v~~l~~------~-------------~  165 (633)
                      |+++++++..+.   |...|.+++|+|++++|++++.|+.|+|||++.... ....+..      +             .
T Consensus       224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (355)
T 3vu4_A          224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD  303 (355)
T ss_dssp             ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred             ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence            999999988885   899999999999999999999999999999986421 1111100      0             0


Q ss_pred             CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          166 SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       166 H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +......++|++            ++.+++.++.|+.+++|++..
T Consensus       304 ~~~~~~~~a~~~------------d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          304 KHVRGCKIAWIS------------ESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             TTCCCCEEEESS------------SSEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCceEEEEeC------------CCCEEEEEeCCCeEEEEEEEc
Confidence            111224455555            556666667799999998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.5e-20  Score=211.28  Aligned_cols=184  Identities=12%  Similarity=0.154  Sum_probs=147.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCC----CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc----
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNE----QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP----   72 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~----~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~----   72 (633)
                      +|+|+|++||+++.||.|+|||.+.  .+..+. |+.    ..|.+++|+|+|+ +|++|+.||+|+|||+.++..    
T Consensus        92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A           92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             EECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEEEECCCCcccccc
Confidence            5999999999999999999999543  555555 442    2589999999998 899999999999999988752    


Q ss_pred             --eeEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---eEe--eCCCCeEEEEEecCCCEEEEEE
Q 006743           73 --KVSWL----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS---SCI--TYEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        73 --~v~~l----~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v---~~i--~h~~~ItsLafSPdG~~LatGs  141 (633)
                        .+..+    .+|...|.+++|+|++  +++++.|++|++||+..+...   ..+  .|...|.+++|+  |.+||+++
T Consensus       168 ~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          168 FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence              34555    6788899999999999  889999999999999887742   344  477899999999  68898887


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEE--ccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW--QRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       142 ~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLaf--sPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                       ++.|++||+.+...  ..+. .+|...|..++|  +|++..++            .+..||+ ++|...
T Consensus       244 -~~tIkLWd~~~~~~--~~~~-~gh~~~V~~va~~~s~d~~~La------------~a~edG~-klw~~d  296 (588)
T 2j04_A          244 -PGYVHKIDLKNYSI--SSLK-TGSLENFHIIPLNHEKESTILL------------MSNKTSY-KVLLED  296 (588)
T ss_dssp             -SSEEEEEETTTTEE--EEEE-CSCCSCCCEEEETTCSSCEEEE------------ECSSCEE-EEEESS
T ss_pred             -CCeEEEEECCCCeE--EEEE-cCCCceEEEEEeeeCCCCCEEE------------EEcCCCC-EEEeec
Confidence             69999999998631  1222 379999999999  88654444            4455777 777654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.86  E-value=2.2e-20  Score=187.47  Aligned_cols=121  Identities=16%  Similarity=0.259  Sum_probs=105.7

Q ss_pred             CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 006743           34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTY  108 (633)
Q Consensus        34 ~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~---~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIW  108 (633)
                      ..|...|.+++|+|+++ +|++|+.||.|+|||+.+...   ....+.+|...|.+++|+|  ++++|++++.|+.|++|
T Consensus         8 ~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             CCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             cccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            34788899999999998 899999999999999986542   3556778999999999999  69999999999999999


Q ss_pred             eCCCC---------ceeeEe-eCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCC
Q 006743          109 DPGSR---------RPSSCI-TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus       109 Dlrtg---------k~v~~i-~h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~~  155 (633)
                      |++++         +.+..+ .|...|.+++|+|+  +.+|++++.||.|++||+++..
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence            99886         334444 58899999999999  9999999999999999998653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.85  E-value=1e-19  Score=189.83  Aligned_cols=195  Identities=14%  Similarity=0.115  Sum_probs=156.9

Q ss_pred             CccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+|+|++| ++++.|+.|++||+.+++.+..+..+.  .+.+++|+|+++.+++++..|+.|++||+.+++. +..+. 
T Consensus        38 ~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-  113 (391)
T 1l0q_A           38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-  113 (391)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-
T ss_pred             EECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-
Confidence            489999987 566689999999999999988887533  7889999999986556777889999999998774 34444 


Q ss_pred             CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEE-EEEEcCCeEEEEECCCCCCc
Q 006743           80 HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWIL-TAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        80 H~~~VtsLafSPdg~~L-aSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~L-atGs~DGsV~IWDlrs~~k~  157 (633)
                      +...+.+++|+|++++| ++++.|+.|++||+++++.+..+.....+.+++|+|++++| +++..|+.|++||+++. +.
T Consensus       114 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~  192 (391)
T 1l0q_A          114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SV  192 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EE
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eE
Confidence            44678999999999977 68888999999999999988888777888999999999988 56778899999999987 33


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      ...+   .+...+.+++|+|++++++.+..         ...++.|++||+....
T Consensus       193 ~~~~---~~~~~~~~~~~~~~g~~l~~~~~---------~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          193 IDTV---KVEAAPSGIAVNPEGTKAYVTNV---------DKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             EEEE---ECSSEEEEEEECTTSSEEEEEEE---------CSSCCEEEEEETTTTE
T ss_pred             EEEE---ecCCCccceEECCCCCEEEEEec---------CcCCCcEEEEECCCCe
Confidence            3333   36678999999997666554411         0158899999987543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.85  E-value=4.2e-20  Score=188.47  Aligned_cols=134  Identities=14%  Similarity=0.259  Sum_probs=116.5

Q ss_pred             EECCCCceeEEEeCCCCCcEEEEEEccCC--CeEEEEEeCCCeEEEEECCC-CCceeEEeccCCCCeEEEEEcCCCCEEE
Q 006743           21 HNLASGAKAAELKDPNEQVLRVLDYSRNS--RHLLVTAGDDGTLHLWDTTG-RSPKVSWLKQHSAPTAGISFSSDDKIIA   97 (633)
Q Consensus        21 WDl~tgk~v~~~~~~~~~~VssLafSpdg--~~lLaSGs~DGtI~IWDl~t-~~~~v~~l~~H~~~VtsLafSPdg~~La   97 (633)
                      |+....+.+..+.+ |...|.+++|+|++  ..+|++|+.||.|+|||+.+ .......+..|...|++++|+|++++|+
T Consensus        24 ~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           24 DNHNPMKDIEVTSS-PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CSSCTTCCEECSSC-CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCCCCcceeEeccC-CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            34444555555554 77889999999995  34899999999999999987 4444477889999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEE--ecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           98 SVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAF--IDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        98 SgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLaf--SPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      +++.|+.|++||+++++.+....|...|.+++|  ++++.+|++++.||.|++||+++..
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            999999999999999998888899999999999  8899999999999999999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.4e-20  Score=211.45  Aligned_cols=185  Identities=11%  Similarity=0.058  Sum_probs=144.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-----------------------------eeEEEeCCCCCcEEEEEEccCCCe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA-----------------------------KAAELKDPNEQVLRVLDYSRNSRH   51 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-----------------------------~v~~~~~~~~~~VssLafSpdg~~   51 (633)
                      +|+|||+++|+++.|++|+  |...++                             ....+...+...|.+++|+|+|. 
T Consensus        22 ~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~-   98 (588)
T 2j04_A           22 TWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDD-   98 (588)
T ss_dssp             EECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSS-
T ss_pred             EECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCC-
Confidence            5899999999999999995  433322                             11122212367799999999998 


Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eeEe
Q 006743           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA-----PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-------SSCI  119 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~-----~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~-------v~~i  119 (633)
                      +|++++.||.|+|||..+   .+..+. |..     .|.+++|+|||++|++|+.||+|++||+.++..       +..+
T Consensus        99 ~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti  174 (588)
T 2j04_A           99 WMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSI  174 (588)
T ss_dssp             CEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence            899999999999999654   345556 665     499999999999999999999999999998753       3443


Q ss_pred             -----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743          120 -----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (633)
Q Consensus       120 -----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k--~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~  192 (633)
                           +|...|.+++|+|||  +++++.|+.|++||+.+...  ....+. .+|...|.+++|+  +++|++        
T Consensus       175 ~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g~~LAS--------  241 (588)
T 2j04_A          175 RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--DYKVVL--------  241 (588)
T ss_dssp             ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--TTEEEE--------
T ss_pred             ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE--CCEEEE--------
Confidence                 366799999999999  88999999999999988752  223342 2688999999997  344443        


Q ss_pred             EEEEeeCCCeEEccCCCC
Q 006743          193 ALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       193 lLlSgs~Dg~IkIWDlr~  210 (633)
                          ++ ++.|++||+..
T Consensus       242 ----a~-~~tIkLWd~~~  254 (588)
T 2j04_A          242 ----TC-PGYVHKIDLKN  254 (588)
T ss_dssp             ----EC-SSEEEEEETTT
T ss_pred             ----Ee-CCeEEEEECCC
Confidence                34 68999999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.84  E-value=7.3e-20  Score=193.60  Aligned_cols=204  Identities=11%  Similarity=0.069  Sum_probs=166.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+++++++++++.|+.|++||+.+++.+..+.. +...+.+++|+|+++.+++++..|+.|++||+.+.+. +..+.. 
T Consensus       176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-  252 (433)
T 3bws_A          176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-  252 (433)
T ss_dssp             EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-
T ss_pred             EEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-
Confidence            3678899999999999999999999998888874 5667889999999985556777899999999987763 444444 


Q ss_pred             CCCeEEEEEcCCCCEEEEEe--------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEE-EEEEcCCeEEEEEC
Q 006743           81 SAPTAGISFSSDDKIIASVG--------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWIL-TAGTSNGRVVFYDI  151 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS--------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~L-atGs~DGsV~IWDl  151 (633)
                      ...+.+++|+|++++|++++        .|+.|++||+++++.+..+.+...+.+++|+|+++++ ++++.|+.|++||+
T Consensus       253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence            45699999999999999988        5889999999999988888777899999999999765 56688999999999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC---CeEEEEeeCCCeEEccCCCCC
Q 006743          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA---ETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd---~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ++. +....+   .+...+.+++|+|++++++++....+   ..++++++.|+.|++||+...
T Consensus       333 ~~~-~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          333 KEK-KVQKSI---PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             TTT-EEEEEE---ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             CCC-cEEEEe---cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence            976 333333   36788999999999998877643322   345667777999999998643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.84  E-value=4.7e-20  Score=194.82  Aligned_cols=152  Identities=8%  Similarity=0.066  Sum_probs=129.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCce--
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPK--   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~-~~~~~~~~VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~~~~--   73 (633)
                      +|+|||++|++++. +.+++|+..+++.+.. ....|...|.+++|+|++. ++++++.|+    .+++||+......  
T Consensus       183 ~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~  260 (365)
T 4h5i_A          183 HFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVL  260 (365)
T ss_dssp             EECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred             EEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecce
Confidence            58999999999985 4577777777776544 3345778899999999997 788888777    6888998665432  


Q ss_pred             -eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           74 -VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        74 -v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                       ...+.+|...|++++|+|++++||+|+.|++|+|||+++++++..+  .|...|++++|+|||++|++|+.|++|+|||
T Consensus       261 ~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          261 RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence             3456789999999999999999999999999999999999988765  5999999999999999999999999999999


Q ss_pred             CCCC
Q 006743          151 IRGK  154 (633)
Q Consensus       151 lrs~  154 (633)
                      +...
T Consensus       341 ip~~  344 (365)
T 4h5i_A          341 LPLN  344 (365)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            9754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.84  E-value=4.8e-19  Score=184.79  Aligned_cols=194  Identities=12%  Similarity=0.085  Sum_probs=157.1

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+|+|++|++++ .++.|++||+.+++.+..+..  ...+.+++|+|+++.++++++.|+.|++||+.+.+. +..+..
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~  156 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVSV  156 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEec
Confidence            4899999886655 569999999999998888774  345788999999986668888999999999988774 444444


Q ss_pred             CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCC
Q 006743           80 HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKP  155 (633)
Q Consensus        80 H~~~VtsLafSPdg~~L-aSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs---~DGsV~IWDlrs~~  155 (633)
                      | ..+.+++|+|++++| ++++.|+.|++||+++++.+..+.+...+.+++|+|++++|++++   .++.|++||+++. 
T Consensus       157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-  234 (391)
T 1l0q_A          157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-  234 (391)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-
Confidence            4 567999999999887 677889999999999999888888888999999999999999888   6899999999987 


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +++..+.  . ...+.+++|+|+++++           +++++.|+.|++||+.....
T Consensus       235 ~~~~~~~--~-~~~~~~~~~s~dg~~l-----------~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          235 KITARIP--V-GPDPAGIAVTPDGKKV-----------YVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             EEEEEEE--C-CSSEEEEEECTTSSEE-----------EEEETTTTEEEEEETTTTEE
T ss_pred             eEEEEEe--c-CCCccEEEEccCCCEE-----------EEEcCCCCEEEEEECCCCcE
Confidence            3444444  3 3458899999975544           34556799999999976443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=3.8e-19  Score=190.39  Aligned_cols=184  Identities=16%  Similarity=0.212  Sum_probs=154.3

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      ++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|  ++. ++++|+.||.|++||+.+.+. +..+..|...+
T Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v  322 (445)
T 2ovr_B          248 DGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLT  322 (445)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCE-EEEECCCCSCE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCE-EEEEcCCcccE
Confidence            688899999999999999999988888876 5667888888  555 899999999999999998874 67788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      .++.++  +++|++++.||.|++||+++++.+..+.    |...|.+++|+  +.+|++|+.||.|++||+++++ .+..
T Consensus       323 ~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~-~~~~  397 (445)
T 2ovr_B          323 SGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE-FIRN  397 (445)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred             EEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc-eeee
Confidence            998885  7799999999999999999999887774    78889999996  6899999999999999999874 3444


Q ss_pred             Ee---ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe----EEccCCCC
Q 006743          161 LR---ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS----ILMPDPLP  210 (633)
Q Consensus       161 l~---~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~----IkIWDlr~  210 (633)
                      +.   ...|.+.|.+++|+|++.+            +++++.|+.    |.+||+..
T Consensus       398 ~~~~~~~~~~~~v~~~~~s~~~~~------------la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          398 LVTLESGGSGGVVWRIRASNTKLV------------CAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEECTTGGGTCEEEEEEECSSEEE------------EEEECSSSSSCCEEEEEECCC
T ss_pred             eeccccCCCCceEEEEEecCCEEE------------EEEcccCCCCccEEEEEECCC
Confidence            42   1367889999999995544            455566775    99999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.8e-19  Score=213.38  Aligned_cols=171  Identities=10%  Similarity=0.105  Sum_probs=142.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV------   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v------   74 (633)
                      +|+| |++|++++.|+.|+|||+.+++.+..+.  +...|.+++|+|+++ +|++|+.||.|++||+.+.....      
T Consensus        65 ~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~  140 (902)
T 2oaj_A           65 RFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNL  140 (902)
T ss_dssp             EEET-TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred             EEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccc
Confidence            4888 8899999999999999999999988886  446789999999998 89999999999999998776321      


Q ss_pred             ----EEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEee-C------------------CCCeEEEEE
Q 006743           75 ----SWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCIT-Y------------------EAPFSSLAF  130 (633)
Q Consensus        75 ----~~l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i~-h------------------~~~ItsLaf  130 (633)
                          ..+.+|...|++++|+|+ +..|++|+.|+.| +||+++++++..+. |                  ...|.+++|
T Consensus       141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f  219 (902)
T 2oaj_A          141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY  219 (902)
T ss_dssp             HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred             cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence                124679999999999994 6789999999999 99999998877664 2                  367999999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-----c-----------CCCCCeeEEEEcc
Q 006743          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-----C-----------SSSEAVSSLCWQR  177 (633)
Q Consensus       131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~-----~-----------~H~~~VtsLafsP  177 (633)
                      +|+|.+|++|+.||.|++||+++++ ++.....     .           .|...|++++|++
T Consensus       220 spdg~~lasgs~Dg~i~lWd~~~g~-~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          220 HPNSLHIITIHEDNSLVFWDANSGH-MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC  281 (902)
T ss_dssp             CTTSSEEEEEETTCCEEEEETTTCC-EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCc-EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence            9999999999999999999999863 3332111     0           1356799999975

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.83  E-value=3.9e-19  Score=188.02  Aligned_cols=193  Identities=8%  Similarity=0.052  Sum_probs=158.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeC----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~----~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~   76 (633)
                      +|+|++.++++++.++.|++||+.+++.+..+..    .|...|.+++|++++. ++++++.|+.|++||+.+.+. +..
T Consensus       129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~-~~~  206 (433)
T 3bws_A          129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAY-KAT  206 (433)
T ss_dssp             EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCE-EEE
T ss_pred             EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceE-EEE
Confidence            4788777777788889999999999988764321    3567889999999886 899999999999999988774 566


Q ss_pred             eccCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE--------cCCeEE
Q 006743           77 LKQHSAPTAGISFSSDDKIIAS-VGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT--------SNGRVV  147 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaS-gS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs--------~DGsV~  147 (633)
                      +..|...+.+++|+|+++++++ ++.|+.|++||+++++.+..+.....+.+++|+|++++|++++        .||.|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence            7788999999999999988854 4589999999999999888887777899999999999999888        588999


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +||+++. +.+..+   .|...+.+++|+|+++.           ++++++.|+.|++||+..
T Consensus       287 ~~d~~~~-~~~~~~---~~~~~~~~~~~~~~g~~-----------l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          287 IYSMDKE-KLIDTI---GPPGNKRHIVSGNTENK-----------IYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             EEETTTT-EEEEEE---EEEECEEEEEECSSTTE-----------EEEEETTTTEEEEEETTT
T ss_pred             EEECCCC-cEEeec---cCCCCcceEEECCCCCE-----------EEEEecCCCEEEEEECCC
Confidence            9999977 233333   45668999999997543           445556799999999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=9.3e-19  Score=190.43  Aligned_cols=202  Identities=14%  Similarity=0.097  Sum_probs=146.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC----------ceeEEE----eCCCCCcEEEEEEccCCCeEEE----EEeCCCeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASG----------AKAAEL----KDPNEQVLRVLDYSRNSRHLLV----TAGDDGTL   62 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tg----------k~v~~~----~~~~~~~VssLafSpdg~~lLa----SGs~DGtI   62 (633)
                      ++++++.++++++.++ |+||+....          ..+...    ..++...|.+++|+|+++ +|+    +|+.|+.|
T Consensus        43 avs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~sgs~d~~v  120 (434)
T 2oit_A           43 AVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMMSSEYGSII  120 (434)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEEETTTEEEE
T ss_pred             EEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEeccCCCceE
Confidence            4678899999999888 889875311          011111    112456799999999998 666    78889999


Q ss_pred             EEEECCCC-----Cc-----eeEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeE-eeCCCCeEEEEE
Q 006743           63 HLWDTTGR-----SP-----KVSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSC-ITYEAPFSSLAF  130 (633)
Q Consensus        63 ~IWDl~t~-----~~-----~v~~l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~-i~h~~~ItsLaf  130 (633)
                      +|||+.+.     ..     ....+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+.. ..|...|.+++|
T Consensus       121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~w  200 (434)
T 2oit_A          121 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCW  200 (434)
T ss_dssp             EEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEE
T ss_pred             EEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEE
Confidence            99998543     11     13556679999999999996 89999999999999999998865533 357889999999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEc
Q 006743          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (633)
Q Consensus       131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~-----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkI  205 (633)
                      +|+|++|++|+.||.|++||++.  .....+...     .|...|.+++|++++.++++..... +..    .....+++
T Consensus       201 spdg~~lasgs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d-g~~----~~~~~v~i  273 (434)
T 2oit_A          201 SPKGKQLAVGKQNGTVVQYLPTL--QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD-GTL----ETSPDVVM  273 (434)
T ss_dssp             CTTSSCEEEEETTSCEEEECTTC--CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT-CCS----SSCCEEEE
T ss_pred             cCCCCEEEEEcCCCcEEEEccCC--cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC-Ccc----CCCCceEE
Confidence            99999999999999999999983  223333321     2334899999999766664431110 000    11234889


Q ss_pred             cCCCCC
Q 006743          206 PDPLPS  211 (633)
Q Consensus       206 WDlr~~  211 (633)
                      ||++..
T Consensus       274 ~~l~~~  279 (434)
T 2oit_A          274 ALLPKK  279 (434)
T ss_dssp             EECCCT
T ss_pred             EEeccC
Confidence            998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.78  E-value=2e-17  Score=178.09  Aligned_cols=188  Identities=13%  Similarity=0.132  Sum_probs=148.7

Q ss_pred             CccCCCCEEEEEECCC---cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISLSG---DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG---~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~   75 (633)
                      +|+|||++|++++.++   .|++||+.+++... +.. +...+.+++|+|+++.++++++.|+.  |++||+.+++  ..
T Consensus       185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~-~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~~  260 (415)
T 2hqs_A          185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IR  260 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EE
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eec-CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--EE
Confidence            4899999999999875   99999999887754 443 45678899999999855557776665  9999998876  46


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~D-G--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW  149 (633)
                      .+..|...+.+++|+|++++|++++.+ +  .|++||+.+++......+...+.+++|+|+|++|++++.+   +.|++|
T Consensus       261 ~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          261 QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence            678888999999999999999988864 4  7888899988765555567789999999999999988764   589999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC---eEEccCCC
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD---SILMPDPL  209 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg---~IkIWDlr  209 (633)
                      |+.++..  ..+.  .+. .+.+++|+|+|++|+.++            .++   .|++||+.
T Consensus       341 d~~~~~~--~~l~--~~~-~~~~~~~spdg~~l~~~s------------~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          341 DLATGGV--QVLS--STF-LDETPSLAPNGTMVIYSS------------SQGMGSVLNLVSTD  386 (415)
T ss_dssp             ETTTCCE--EECC--CSS-SCEEEEECTTSSEEEEEE------------EETTEEEEEEEETT
T ss_pred             ECCCCCE--EEec--CCC-CcCCeEEcCCCCEEEEEE------------cCCCccEEEEEECC
Confidence            9998742  2232  343 899999999877766552            233   68888864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.78  E-value=2.6e-18  Score=182.65  Aligned_cols=147  Identities=12%  Similarity=0.116  Sum_probs=116.0

Q ss_pred             ccC---CCCEEEEEECCCcEEEEECCCCceeEEEeCCCC--CcEEEEEEccCCCeE-----------EEEEeCCCeEEEE
Q 006743            2 YNC---KDEHLASISLSGDLILHNLASGAKAAELKDPNE--QVLRVLDYSRNSRHL-----------LVTAGDDGTLHLW   65 (633)
Q Consensus         2 FSp---dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~--~~VssLafSpdg~~l-----------LaSGs~DGtI~IW   65 (633)
                      |++   ++++|++|+.|++|+|||+++++.+..+.+++.  ..+.+++|+|++..+           +++|+.|++|++|
T Consensus       186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW  265 (356)
T 2w18_A          186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI  265 (356)
T ss_dssp             EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred             eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence            555   668899999999999999999999999986543  467778999998732           3678899999999


Q ss_pred             ECCCCCceeEEe-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCe-EEEEEecCCCEEE
Q 006743           66 DTTGRSPKVSWL-----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPF-SSLAFIDDDWILT  138 (633)
Q Consensus        66 Dl~t~~~~v~~l-----~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~I-tsLafSPdG~~La  138 (633)
                      |..+++.. ..+     .+|...+.+..++  +.++++++.|++|+|||+.+++++..+. |...+ .+++|+|||++|+
T Consensus       266 d~~tgk~l-~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La  342 (356)
T 2w18_A          266 NPKTTLSV-GVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL  342 (356)
T ss_dssp             ETTTTEEE-EEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred             ECCCCEEE-EEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence            99887742 222     3666665555554  8899999999999999999999998884 66554 4689999999999


Q ss_pred             EEEcCCeEEEEEC
Q 006743          139 AGTSNGRVVFYDI  151 (633)
Q Consensus       139 tGs~DGsV~IWDl  151 (633)
                      +|+.|++|+|||+
T Consensus       343 SGS~D~TIklWd~  355 (356)
T 2w18_A          343 AGQKDGNIFVYHY  355 (356)
T ss_dssp             EECTTSCEEEEEE
T ss_pred             EEECCCcEEEecC
Confidence            9999999999996

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=5.2e-17  Score=159.68  Aligned_cols=202  Identities=12%  Similarity=0.009  Sum_probs=143.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEE--ECCCCCceeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLW--DTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs--~DGtI~IW--Dl~t~~~~v~   75 (633)
                      +|+|+|++|++++ ++.|++||+.+ ++....+..++...+.+++|+|+++ +|++++  .++.+.||  ++.+..  ..
T Consensus        48 ~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~--~~  123 (297)
T 2ojh_A           48 NWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGT--PR  123 (297)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCC--CE
T ss_pred             EECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCc--eE
Confidence            4899999999886 88999999998 7776666555556778899999998 677777  33445555  555544  34


Q ss_pred             EeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeC--CCCceeeEeeCCCCeEEEEEecCCCEEEEEE-cCCeEEEEEC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDP--GSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDI  151 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~La-SgS~DGtVrIWDl--rtgk~v~~i~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDl  151 (633)
                      .+..+. .+.+++|+|++++|+ ++..|+.+++|++  .+++......+...+.+++|+|++++|++++ .++.++||++
T Consensus       124 ~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~  202 (297)
T 2ojh_A          124 LMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV  202 (297)
T ss_dssp             ECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence            444443 499999999999877 7788998898885  4555555556788999999999999888766 5899999988


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +........+.  .|...+.+++|+|++++|+..+...... ......+..|++||+..
T Consensus       203 ~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~-~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          203 RVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVF-DHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             ETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCC-SCCSSEEEEEEEEETTS
T ss_pred             CCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCC-cccccCceEEEEEecCC
Confidence            74333344443  5778899999999888776652211100 00000135688898754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.74  E-value=1.8e-16  Score=170.53  Aligned_cols=187  Identities=13%  Similarity=0.095  Sum_probs=144.9

Q ss_pred             CCEEEEEECC------CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCCceeEE
Q 006743            6 DEHLASISLS------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG---TLHLWDTTGRSPKVSW   76 (633)
Q Consensus         6 G~~LaSgs~D------G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG---tI~IWDl~t~~~~v~~   76 (633)
                      +..++.++.+      +.|++||+. +.....+.. +...+.+++|+|+++ .|++++.|+   .|++||+.+++.  ..
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~-~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~--~~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV--RQ  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEE-ESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE--EE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeC-CCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcE--EE
Confidence            6677766654      799999986 445566654 556788999999998 788888775   999999998873  45


Q ss_pred             eccCCCCeEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEE
Q 006743           77 LKQHSAPTAGISFSSDDKIIA-SVGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYD  150 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~La-SgS~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWD  150 (633)
                      +..|...+.+++|+||+++|+ +++.|+  .|++||+++++......+...+.+++|+|||++|++++. ++  .|++||
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            677888999999999999887 666655  599999999887666678889999999999999998876 44  688889


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +.++.  ...+.  .+...+.+++|+|+|++|+.++..         ..+..|++||+..
T Consensus       298 ~~~~~--~~~l~--~~~~~~~~~~~spdG~~l~~~~~~---------~g~~~i~~~d~~~  344 (415)
T 2hqs_A          298 INGGA--PQRIT--WEGSQNQDADVSSDGKFMVMVSSN---------GGQQHIAKQDLAT  344 (415)
T ss_dssp             TTSSC--CEECC--CSSSEEEEEEECTTSSEEEEEEEC---------SSCEEEEEEETTT
T ss_pred             CCCCC--EEEEe--cCCCcccCeEECCCCCEEEEEECc---------CCceEEEEEECCC
Confidence            88763  22232  466789999999988887765221         1145788898854

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.73  E-value=7.1e-17  Score=175.57  Aligned_cols=199  Identities=12%  Similarity=0.145  Sum_probs=143.4

Q ss_pred             CccCCCCEEE----EEECCCcEEEEECCCC--------ceeEEE--eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006743            1 MYNCKDEHLA----SISLSGDLILHNLASG--------AKAAEL--KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (633)
Q Consensus         1 AFSpdG~~La----Sgs~DG~I~IWDl~tg--------k~v~~~--~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWD   66 (633)
                      +|+++|++|+    +|+.|+.|+|||+.++        +.+..+  ...|...|.+++|+|++.++|++++.||+|+|||
T Consensus        99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD  178 (434)
T 2oit_A           99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ  178 (434)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence            5899999999    7788999999998654        222222  2236778999999998555999999999999999


Q ss_pred             CCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-C-------CCCeEEEEEecCCCEEE
Q 006743           67 TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-Y-------EAPFSSLAFIDDDWILT  138 (633)
Q Consensus        67 l~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h-------~~~ItsLafSPdG~~La  138 (633)
                      +++... +.....|...|++++|+|++++|++|+.||.|++||++ ++....+. +       ...|.+++|++++.+++
T Consensus       179 ~~~~~~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          179 VTETVK-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             ESSSEE-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             cCCCcc-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence            988753 44456788999999999999999999999999999998 55444432 2       23799999999887776


Q ss_pred             E-EEcCC------eEEEEECCCCCC--ceEEEee--c-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743          139 A-GTSNG------RVVFYDIRGKPQ--PLTVLRA--C-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (633)
Q Consensus       139 t-Gs~DG------sV~IWDlrs~~k--~v~~l~~--~-----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg  201 (633)
                      + ...||      .+++||+++.+.  +....+.  .     +...+...+.+-++.++++.++..+.+.-+++...|+
T Consensus       257 ~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~  335 (434)
T 2oit_A          257 VYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQ  335 (434)
T ss_dssp             EEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTS
T ss_pred             EEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCC
Confidence            4 34443      399999986531  2221211  1     2223333444447777777776667777777765544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.72  E-value=1.5e-15  Score=154.63  Aligned_cols=198  Identities=13%  Similarity=0.091  Sum_probs=147.0

Q ss_pred             CccCCCCE-EEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEH-LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~-LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|..++++ ++++..++.|.+||+.+++.+..+..+ ...+ .++|+|+++.+++++..++.|++||+.+.+.....+..
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            36666665 566778899999999999988887754 4445 79999999855556666999999999888753555666


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEE-EcCCe-EEEEECCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGR-VVFYDIRGK  154 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatG-s~DGs-V~IWDlrs~  154 (633)
                      +..++.+++|+|++++++++..++   .|++||+.+++.+..+.....+.+++|+|+|++|+++ ..++. |++|++...
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            666666699999999999555553   8999999999988888777788999999999866554 55588 999999865


Q ss_pred             CCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          155 PQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       155 ~k~v~~-l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ...... .........+.+++|+|+|+++           ++++..++.|.+||+...
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l-----------~v~~~~~~~v~v~d~~~~  208 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFA-----------FVANLIGNSIGILETQNP  208 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEE-----------EEEETTTTEEEEEECSST
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEE-----------EEEeCCCCeEEEEECCCC
Confidence            332211 1212345668999999976644           334455889999998643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.71  E-value=1.9e-16  Score=180.20  Aligned_cols=178  Identities=12%  Similarity=0.102  Sum_probs=139.9

Q ss_pred             CccCCCCEEEEEEC-CC-----cEEEEECCCCceeEEEeCCCC-----------------------CcEEEEEEccCCCe
Q 006743            1 MYNCKDEHLASISL-SG-----DLILHNLASGAKAAELKDPNE-----------------------QVLRVLDYSRNSRH   51 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG-----~I~IWDl~tgk~v~~~~~~~~-----------------------~~VssLafSpdg~~   51 (633)
                      +|+|||++|++++. |+     .|++||+.+++....+..+..                       ..+..++|+|||+ 
T Consensus        43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~-  121 (741)
T 2ecf_A           43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ-  121 (741)
T ss_dssp             EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS-
T ss_pred             eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC-
Confidence            48999999999998 88     899999999887766643211                       2367799999998 


Q ss_pred             EEEEEeCCCeEEEEECCCC---CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC----
Q 006743           52 LLVTAGDDGTLHLWDTTGR---SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP----  124 (633)
Q Consensus        52 lLaSGs~DGtI~IWDl~t~---~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~----  124 (633)
                      +|++++. +.|++||+.++   .  ...+..|...+.+++|+|||++|+.++. +.|++||+.+++..........    
T Consensus       122 ~l~~~~~-~~i~~~d~~~~~~~~--~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~  197 (741)
T 2ecf_A          122 RLLFPLG-GELYLYDLKQEGKAA--VRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGN  197 (741)
T ss_dssp             EEEEEET-TEEEEEESSSCSTTS--CCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred             EEEEEeC-CcEEEEECCCCCcce--EEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceec
Confidence            6777665 99999999887   4  3456778889999999999999999884 5899999998877655432221    


Q ss_pred             -------------eEEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC-CCCc
Q 006743          125 -------------FSSLAFIDDDWILTAGTSNG---------------------------------RVVFYDIRG-KPQP  157 (633)
Q Consensus       125 -------------ItsLafSPdG~~LatGs~DG---------------------------------sV~IWDlrs-~~k~  157 (633)
                                   +.+++|+|||++|++++.|+                                 .|++||+.+ ++ .
T Consensus       198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~  276 (741)
T 2ecf_A          198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-T  276 (741)
T ss_dssp             SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-C
T ss_pred             cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-e
Confidence                         47899999999999988765                                 799999987 63 3


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ........|...+..++| |+|++|+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~  303 (741)
T 2ecf_A          277 QWIDLGKEQDIYLARVNW-RDPQHLSFQ  303 (741)
T ss_dssp             EEECCCSCSSEEEEEEEE-EETTEEEEE
T ss_pred             EEecCCCCcceEEEEEEe-CCCCEEEEE
Confidence            332221247788999999 999988754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.70  E-value=1.4e-15  Score=155.22  Aligned_cols=196  Identities=10%  Similarity=0.068  Sum_probs=152.1

Q ss_pred             CccCCCCEEEEEEC-------CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006743            1 MYNCKDEHLASISL-------SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~-------DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~   73 (633)
                      +|+++|++|++++.       ++.|.+||..+++.+..+...  ..+..++|+++++.++++...++.|.+||..+++. 
T Consensus        47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-  123 (353)
T 3vgz_A           47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV-  123 (353)
T ss_dssp             EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE-
T ss_pred             EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee-
Confidence            47899999988874       568999999999988887642  33566899999986677777789999999988874 


Q ss_pred             eEEeccCCCC---------eEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEE
Q 006743           74 VSWLKQHSAP---------TAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        74 v~~l~~H~~~---------VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs  141 (633)
                      +..+..+...         +.+++|+|+++++++++  .++.|.+||+.+++.+..+. +...+.+++|+|+|++|++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  203 (353)
T 3vgz_A          124 KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTN  203 (353)
T ss_dssp             EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEEC
T ss_pred             EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEc
Confidence            3444443322         78999999999887776  47899999999999888876 666689999999999999999


Q ss_pred             cCCeEEEEECCCCCCceEEEee--cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          142 SNGRVVFYDIRGKPQPLTVLRA--CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       142 ~DGsV~IWDlrs~~k~v~~l~~--~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      .++.|++||+.+.+ ....+..  .++...+.+++|+|++++++.           +...++.|.+||+...
T Consensus       204 ~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----------~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          204 ADGELITIDTADNK-ILSRKKLLDDGKEHFFINISLDTARQRAFI-----------TDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCCSSSCCCEEEEEEETTTTEEEE-----------EESSSSEEEEEETTTC
T ss_pred             CCCeEEEEECCCCe-EEEEEEcCCCCCCcccceEEECCCCCEEEE-----------EeCCCCEEEEEECCCC
Confidence            99999999999873 3333332  124556888999997665433           3345688999988543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.70  E-value=8.4e-16  Score=155.66  Aligned_cols=196  Identities=10%  Similarity=0.040  Sum_probs=137.9

Q ss_pred             CccCCCCEEEEEECC-CcEEEEECC--CCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ce
Q 006743            1 MYNCKDEHLASISLS-GDLILHNLA--SGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PK   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~D-G~I~IWDl~--tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~   73 (633)
                      +|+|+|++|++++.+ +.|.+|++.  +++  .+..+.. . ..+..++|+|+++.+++++..++.|++||+..+.  ..
T Consensus        44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~  121 (343)
T 1ri6_A           44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV  121 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             EECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence            489999999998886 999999997  554  3344543 2 2567799999998544555568999999994221  12


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Cceee----Ee--eCCCCeEEEEEecCCCEEEEEE-cCC
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGS-RRPSS----CI--TYEAPFSSLAFIDDDWILTAGT-SNG  144 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrt-gk~v~----~i--~h~~~ItsLafSPdG~~LatGs-~DG  144 (633)
                      ...+. ....+.+++|+|+++++++++ .++.|++||+.+ ++...    ..  .....+.+++|+|++++|++++ .++
T Consensus       122 ~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          122 VDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  200 (343)
T ss_dssp             EEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence            23333 345689999999999888887 899999999987 65432    12  2455788999999999876655 789


Q ss_pred             eEEEEECCCCCCc---eEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          145 RVVFYDIRGKPQP---LTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       145 sV~IWDlrs~~k~---v~~l~~~----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .|++||++.....   ...+...    .....+.+++|+|++++|+           +++..++.|.+||+..
T Consensus       201 ~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~-----------v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          201 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY-----------ACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE-----------EEETTTTEEEEEEECT
T ss_pred             EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE-----------EEecCCCEEEEEEEcC
Confidence            9999999642211   1222211    1134567899999765543           3445688999999863

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=4e-16  Score=153.35  Aligned_cols=182  Identities=12%  Similarity=0.032  Sum_probs=135.0

Q ss_pred             CccCCCCEEEEEEC--CCc--EEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743            1 MYNCKDEHLASISL--SGD--LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~--DG~--I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~   76 (633)
                      +|+|+|++|++++.  ++.  |.+|+..+++ ...+..  ...+..++|+|+++.+++++..|+.++||++.........
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK--NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS--SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec--CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            48999999999983  344  5555555544 344443  2347889999999966668889999999996433223566


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC-CCceeeEe-eCCCCeEEEEEecCCCEEEEEEcC----------
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPG-SRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSN----------  143 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlr-tgk~v~~i-~h~~~ItsLafSPdG~~LatGs~D----------  143 (633)
                      +..|...+.+++|+|++++|+.++ .++.+++|++. .+.....+ .+...+.+++|+|+|++|++++.+          
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  247 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL  247 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence            778888999999999999888766 58889999875 33344443 566789999999999999988766          


Q ss_pred             -CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006743          144 -GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (633)
Q Consensus       144 -GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s  186 (633)
                       +.|++||+.+.+ ........+|...+.+++|+|++++|+.++
T Consensus       248 ~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          248 DVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             EEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             ceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCCEEEEEE
Confidence             569999998763 333333336788999999999888777653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.69  E-value=5.3e-15  Score=151.02  Aligned_cols=195  Identities=14%  Similarity=0.124  Sum_probs=148.0

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCC--------cEEEEEEccCCCeEEEEE-eCCCeEEEEECCCC
Q 006743            1 MYNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQ--------VLRVLDYSRNSRHLLVTA-GDDGTLHLWDTTGR   70 (633)
Q Consensus         1 AFSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~--------~VssLafSpdg~~lLaSG-s~DGtI~IWDl~t~   70 (633)
                      +|+++|+++++++ .++.|.+||..+++.+..+..+...        .+.+++|+|+++.+++++ ..++.|.+||..+.
T Consensus        95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~  174 (353)
T 3vgz_A           95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI  174 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred             EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence            4789999666554 5799999999999988888754322        267899999998544444 35889999999887


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-----CCCCeEEEEEecCCCEEEEEEcC-C
Q 006743           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTAGTSN-G  144 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-----h~~~ItsLafSPdG~~LatGs~D-G  144 (633)
                      +. +..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+.     +...+.+++|+|++++|++++.+ +
T Consensus       175 ~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  253 (353)
T 3vgz_A          175 KL-KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA  253 (353)
T ss_dssp             EE-EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred             ce-EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence            73 44555466678999999999999999999999999999998877664     35568889999999988777654 9


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .|++||+.+.+ .+..+..  . . ..+++|+|+++++           +++...++.|.+||+....
T Consensus       254 ~v~~~d~~~~~-~~~~~~~--~-~-~~~~~~s~dg~~l-----------~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          254 EVLVVDTRNGN-ILAKVAA--P-E-SLAVLFNPARNEA-----------YVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             EEEEEETTTCC-EEEEEEC--S-S-CCCEEEETTTTEE-----------EEEETTTTEEEEEETTTTE
T ss_pred             EEEEEECCCCc-EEEEEEc--C-C-CceEEECCCCCEE-----------EEEECCCCeEEEEECCCCe
Confidence            99999998873 3444442  1 1 2568899875543           3444568899999886443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.68  E-value=3.2e-15  Score=152.17  Aligned_cols=197  Identities=6%  Similarity=0.019  Sum_probs=142.5

Q ss_pred             CccCCCCEEEEEECCC---cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCCcee--
Q 006743            1 MYNCKDEHLASISLSG---DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-LHLWDTTGRSPKV--   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG---~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt-I~IWDl~t~~~~v--   74 (633)
                      +|+|+|++|+++..++   .|.+||+.+++.+..+..  .....+++|+|+++.++++...++. |.+|++.......  
T Consensus        90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~  167 (331)
T 3u4y_A           90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT  167 (331)
T ss_dssp             EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred             EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence            4889999999555553   899999999988887764  3445789999999867777777788 9999997544321  


Q ss_pred             -EEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCce---eeEeeCCCCeEEEEEecCCCEEEEEE-cCCeEEE
Q 006743           75 -SWLKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVF  148 (633)
Q Consensus        75 -~~l~~H~~~VtsLafSPdg~~LaSg-S~DGtVrIWDlrtgk~---v~~i~h~~~ItsLafSPdG~~LatGs-~DGsV~I  148 (633)
                       .........+.+++|+|++++++++ ..++.|++||+.+++.   +..+.....+..++|+|||++|++++ .++.|.+
T Consensus       168 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~  247 (331)
T 3u4y_A          168 GQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFN  247 (331)
T ss_dssp             EEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred             CCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence             1122345568999999999966555 4688999999999888   77777778889999999999877665 4788999


Q ss_pred             EECCCCCC-ceEEEeec--CCCCC---eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          149 YDIRGKPQ-PLTVLRAC--SSSEA---VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       149 WDlrs~~k-~v~~l~~~--~H~~~---VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ||+.+++. .+..+...  .+...   ..+++|+|++++|           ++++..++.|.+||+..
T Consensus       248 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l-----------~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          248 FNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL-----------FISANISRELKVFTISG  304 (331)
T ss_dssp             EETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE-----------EEEETTTTEEEEEETTS
T ss_pred             EECCCCceeeecccccccccCCCCcccccceEECCCCCEE-----------EEecCCCCcEEEEEecC
Confidence            99987632 01111111  11222   2458999975554           33445577999999853

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.68  E-value=5.5e-15  Score=149.27  Aligned_cols=145  Identities=13%  Similarity=0.089  Sum_probs=118.5

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCC-cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC----
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH----   80 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~-~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H----   80 (633)
                      ++|++++.++.|.+||+.+++.+..+...+.. .+..++|+|+++.+++++..++.|.+||+.+.+. +..+. .+    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence            57899999999999999999988888743322 3567899999986677777889999999988774 33332 22    


Q ss_pred             CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           81 SAPTAGISFSSDDKIIASVG------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS------------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      ...+.+++|+|++++|+++.            .++.|++||+.+++.+..+.....+.+++|+|+|++|+++  ++.|++
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence            12678899999999998886            5799999999999888777767778899999999988888  688999


Q ss_pred             EECCCC
Q 006743          149 YDIRGK  154 (633)
Q Consensus       149 WDlrs~  154 (633)
                      ||+.+.
T Consensus       159 ~d~~~~  164 (337)
T 1pby_B          159 MDPEAG  164 (337)
T ss_dssp             EETTTT
T ss_pred             EECCCC
Confidence            999876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.66  E-value=4.6e-15  Score=150.93  Aligned_cols=151  Identities=11%  Similarity=0.050  Sum_probs=117.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-c
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-Q   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~   79 (633)
                      +++++++++++++.++.|++||+.+++.+..+..+....+..++|+|+++.+++++..++.|.+||+.+++. +..+. .
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~~~   84 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANLS   84 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEESC
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEEcc
Confidence            467888899999999999999999999888887543224567899999985666777899999999988764 33333 2


Q ss_pred             C-----CCCeEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCce---eeEeeCCCCeEEEEEecCCCEEEE
Q 006743           80 H-----SAPTAGISFSSDDKIIASVGLD------------KKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        80 H-----~~~VtsLafSPdg~~LaSgS~D------------GtVrIWDlrtgk~---v~~i~h~~~ItsLafSPdG~~Lat  139 (633)
                      +     ...+.+++|+|++++|++++.+            +.|++||+.+++.   +....+...+.+++|+|+|+ +++
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~  163 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV  163 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE
Confidence            2     2337899999999999999865            8999999988543   33445566789999999999 555


Q ss_pred             EEcCCeEEEEECCCCC
Q 006743          140 GTSNGRVVFYDIRGKP  155 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~  155 (633)
                      ++  +.|++||+.+.+
T Consensus       164 ~~--~~i~~~d~~~~~  177 (349)
T 1jmx_B          164 AG--PDIYKMDVKTGK  177 (349)
T ss_dssp             ES--SSEEEECTTTCC
T ss_pred             cc--CcEEEEeCCCCc
Confidence            54  349999998763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.66  E-value=2.9e-15  Score=151.69  Aligned_cols=189  Identities=8%  Similarity=0.008  Sum_probs=133.3

Q ss_pred             CEEEEE-ECCCcEEEEECC-CCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC-CeEEEEECC--CCCce-eEEec
Q 006743            7 EHLASI-SLSGDLILHNLA-SGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-GTLHLWDTT--GRSPK-VSWLK   78 (633)
Q Consensus         7 ~~LaSg-s~DG~I~IWDl~-tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D-GtI~IWDl~--t~~~~-v~~l~   78 (633)
                      ++++++ +.|+.|++||+. +++  .+..+.  +...+.+++|+|+++ +|++++.+ +.|++|++.  ++... +..+.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence            444444 779999999985 342  333333  445677799999998 56666665 999999997  44422 23333


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCC---CCceeeEeeCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 006743           79 QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPG---SRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRG  153 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlr---tgk~v~~i~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs  153 (633)
                      .+ ..+.+++|+|++++|++++. ++.|++||+.   ..+.+..+.....+.+++|+|++++|++++ .++.|++||+.+
T Consensus        82 ~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           82 LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            33 37899999999998877665 8899999994   334455555566799999999999888887 899999999987


Q ss_pred             CCCceEEE--e-ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          154 KPQPLTVL--R-ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       154 ~~k~v~~l--~-~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ..+.....  . .......+.+++|+|++++++           +++..++.|.+||+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~-----------~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY-----------CVNELNSSVDVWELKD  209 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE-----------EEETTTTEEEEEESSC
T ss_pred             CCceeeecccccccCCCCCcceEEECCCCCEEE-----------EEeCCCCEEEEEEecC
Confidence            32322211  1 112345788999999765543           3344688999999854

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.66  E-value=6.6e-15  Score=164.88  Aligned_cols=195  Identities=12%  Similarity=0.169  Sum_probs=153.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--CCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl--~t~~~~v~~l~   78 (633)
                      +|+|++..++++..|+.|.+||..+++.+..+..++.  +..++|+|+++ +|++++.|+.|.+||+  .+.+. +..+.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~~~-~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTK-VAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEE-EEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCC-EEEEECCCCeEEEEECcCCCCcE-EEEEe
Confidence            4788888899999999999999999999999985443  78899999998 7889999999999999  66553 44555


Q ss_pred             cCCCCeEEEEEcC----CCCEEEEEeC-CCeEEEEeCCCCceeeEeeC------------CCCeEEEEEecCCCE-EEEE
Q 006743           79 QHSAPTAGISFSS----DDKIIASVGL-DKKLYTYDPGSRRPSSCITY------------EAPFSSLAFIDDDWI-LTAG  140 (633)
Q Consensus        79 ~H~~~VtsLafSP----dg~~LaSgS~-DGtVrIWDlrtgk~v~~i~h------------~~~ItsLafSPdG~~-LatG  140 (633)
                       +...+..++|+|    +++++++++. +++|.+||..+++++..+..            ...+.++.++|++.. +++.
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence             456789999999    9999999884 89999999999998877642            237899999997655 5566


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          141 TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       141 s~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ..++.|.+||+.+.+.. ... ...+...+..++|+|+|+++++           ++..++.|.+||+.....
T Consensus       299 ~~~g~i~vvd~~~~~~l-~~~-~i~~~~~~~~~~~spdg~~l~v-----------a~~~~~~v~v~D~~tg~l  358 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNL-TVT-SIGAAPFLHDGGWDSSHRYFMT-----------AANNSNKVAVIDSKDRRL  358 (543)
T ss_dssp             TTTTEEEEEECTTSSSC-EEE-EEECCSSCCCEEECTTSCEEEE-----------EEGGGTEEEEEETTTTEE
T ss_pred             CCCCeEEEEEecCCCcc-eeE-EeccCcCccCceECCCCCEEEE-----------EecCCCeEEEEECCCCeE
Confidence            77899999999876433 211 1235677889999997665533           334578899999875443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.65  E-value=7e-16  Score=174.76  Aligned_cols=196  Identities=9%  Similarity=0.058  Sum_probs=145.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCC--cEEEEEEccCCCeEEEEEeCC---------CeEEEEECCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQ--VLRVLDYSRNSRHLLVTAGDD---------GTLHLWDTTG   69 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~--~VssLafSpdg~~lLaSGs~D---------GtI~IWDl~t   69 (633)
                      +|+|||+++++ +.||.|++||+.+++....+..+...  .|..++|+|||+ +|++++.+         +.|++||+.+
T Consensus        23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~  100 (723)
T 1xfd_A           23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPH  100 (723)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC-EEEEEecCccceeecceeeEEEEECCC
Confidence            59999997776 78999999999999887777643221  377899999998 67777664         7899999988


Q ss_pred             CCceeEEec---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCC------------------eEE
Q 006743           70 RSPKVSWLK---QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAP------------------FSS  127 (633)
Q Consensus        70 ~~~~v~~l~---~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~------------------Its  127 (633)
                      ++.  ..+.   .|...+..++|+|||++|+.++. +.|++||+.+++...... +...                  +.+
T Consensus       101 ~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~  177 (723)
T 1xfd_A          101 GDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (723)
T ss_dssp             CCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             Cce--EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence            774  3333   34455899999999999999986 789999999988766553 2222                  378


Q ss_pred             EEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCCCceEEEeec----CCCCC
Q 006743          128 LAFIDDDWILTAGTSNG----------------------------------RVVFYDIRGKPQPLTVLRAC----SSSEA  169 (633)
Q Consensus       128 LafSPdG~~LatGs~DG----------------------------------sV~IWDlrs~~k~v~~l~~~----~H~~~  169 (633)
                      ++|+|||++|++++.|+                                  .|++||+.++.. ...+...    .+...
T Consensus       178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~  256 (723)
T 1xfd_A          178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYY  256 (723)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEE
T ss_pred             EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccce
Confidence            99999999999887653                                  799999988742 2333311    13677


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       170 VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +.+++|+|||++++.....        +..+..|++||+..
T Consensus       257 ~~~~~~SpDg~~l~~~~~~--------~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          257 ITMVKWATSTKVAVTWLNR--------AQNVSILTLCDATT  289 (723)
T ss_dssp             EEEEEESSSSEEEEEEEET--------TSCEEEEEEEETTT
T ss_pred             eEEEEEeCCCeEEEEEEcC--------CCCeEEEEEEeCCC
Confidence            9999999998877554221        11245678888754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.63  E-value=3.5e-14  Score=143.29  Aligned_cols=192  Identities=11%  Similarity=0.056  Sum_probs=139.2

Q ss_pred             CccCCCCEEEEE-ECCCcEEEEECCCCceeEEEeCCCC----CcEEEEEEccCCCeEEEEEe------------CCCeEE
Q 006743            1 MYNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNE----QVLRVLDYSRNSRHLLVTAG------------DDGTLH   63 (633)
Q Consensus         1 AFSpdG~~LaSg-s~DG~I~IWDl~tgk~v~~~~~~~~----~~VssLafSpdg~~lLaSGs------------~DGtI~   63 (633)
                      +|+|+|++++++ ..++.|.+||+.+++.+..+...+.    ..+..++|+|+++ +|+++.            .++.|.
T Consensus        40 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~  118 (337)
T 1pby_B           40 MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEE
T ss_pred             EEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCC-EEEEEecccccccccccccCceEE
Confidence            478999876554 5578999999999998877764321    1455689999998 566664            579999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC----------------------
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY----------------------  121 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h----------------------  121 (633)
                      +||+.+.+. +..+. ....+.+++|+|++++|+++  ++.|++||+.+++.+..+..                      
T Consensus       119 v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  194 (337)
T 1pby_B          119 LYDAETLSR-RKAFE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES  194 (337)
T ss_dssp             EEETTTTEE-EEEEE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTT
T ss_pred             EEECCCCcE-EEEEe-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccC
Confidence            999987763 33333 34568899999999988887  67899999987765543311                      


Q ss_pred             ---------------------------------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743          122 ---------------------------------------------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus       122 ---------------------------------------------~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                                                                   ...+.+++|+|+|++|+++  ++.|++||+.+. +
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~  271 (337)
T 1pby_B          195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-A  271 (337)
T ss_dssp             TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-E
T ss_pred             CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC-c
Confidence                                                         1234568999999999888  799999999876 3


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s  215 (633)
                      .+..+.   ....+.+++|+|+++++++            ++.++.|++||+.......
T Consensus       272 ~~~~~~---~~~~~~~~~~s~dg~~l~~------------~~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          272 SIKRVP---LPHSYYSVNVSTDGSTVWL------------GGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EEEEEE---CSSCCCEEEECTTSCEEEE------------ESBSSEEEEEETTTCCEEE
T ss_pred             Ccceec---CCCceeeEEECCCCCEEEE------------EcCCCcEEEEECcCCcEEE
Confidence            333333   3456789999997655443            3458899999987554433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.62  E-value=4.2e-14  Score=158.32  Aligned_cols=193  Identities=13%  Similarity=0.102  Sum_probs=146.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEEC--CCCceeEEEeCCCCCcEEEEEEcc----CCCeEEEEEe-CCCeEEEEECCCCCce
Q 006743            1 MYNCKDEHLASISLSGDLILHNL--ASGAKAAELKDPNEQVLRVLDYSR----NSRHLLVTAG-DDGTLHLWDTTGRSPK   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl--~tgk~v~~~~~~~~~~VssLafSp----dg~~lLaSGs-~DGtI~IWDl~t~~~~   73 (633)
                      +|+|||++|++++.|+.|.+||+  .+++.+..+..  ...++.++|+|    +++ ++++++ .+++|.|||..+.++ 
T Consensus       185 ~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~-  260 (543)
T 1nir_A          185 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEP-  260 (543)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCE-
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--CCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEecccccc-
Confidence            48999999999999999999999  88888888873  45678899999    998 566655 589999999988774 


Q ss_pred             eEEecc----------C-CCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceee--EeeCCCCeEEEEEecCCCEEEE
Q 006743           74 VSWLKQ----------H-SAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        74 v~~l~~----------H-~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~--~i~h~~~ItsLafSPdG~~Lat  139 (633)
                      +..+..          | ...+.++.++|++. ++++...++.|.+||+.+.+.+.  .+.+...+.+++|+|+|++|++
T Consensus       261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~v  340 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMT  340 (543)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEE
Confidence            344432          2 23789999999554 56677789999999998876544  5567778889999999998776


Q ss_pred             EE-cCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee-CCCeEEccCCCC
Q 006743          140 GT-SNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLP  210 (633)
Q Consensus       140 Gs-~DGsV~IWDlrs~~k~v~~l~~~--~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs-~Dg~IkIWDlr~  210 (633)
                      ++ .+++|.+||..++ +++..+...  .|.+....+ ++|+           ++.+++++. .|++|.+||+.+
T Consensus       341 a~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~-----------~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          341 AANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPK-----------YGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETT-----------TEEEEEEEBSSSSEEEEEECCT
T ss_pred             EecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCC-----------CccEEEeccCCCceEEEEEeCC
Confidence            65 5899999999987 444444421  254443333 3553           345556655 589999999876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.62  E-value=8.1e-14  Score=143.50  Aligned_cols=197  Identities=9%  Similarity=0.099  Sum_probs=134.3

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECC-CCc--eeEEEeCC--------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006743            1 MYNCKDEHLASIS-LSGDLILHNLA-SGA--KAAELKDP--------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (633)
Q Consensus         1 AFSpdG~~LaSgs-~DG~I~IWDl~-tgk--~v~~~~~~--------~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~   68 (633)
                      +|+|+|++|++++ .++.|.+|++. ++.  .+..+...        ....+.+++|+|+++ ++++...++.|++||+.
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEEC
Confidence            4799999999888 67999999995 333  23333321        112477899999999 88888889999999998


Q ss_pred             -CCCce-eEEecc-CCCCeEEEEEcCCCCEEEE-EeCCCeEEEEeCCC--Cceee--Eee-CC------CCeEEEEEecC
Q 006743           69 -GRSPK-VSWLKQ-HSAPTAGISFSSDDKIIAS-VGLDKKLYTYDPGS--RRPSS--CIT-YE------APFSSLAFIDD  133 (633)
Q Consensus        69 -t~~~~-v~~l~~-H~~~VtsLafSPdg~~LaS-gS~DGtVrIWDlrt--gk~v~--~i~-h~------~~ItsLafSPd  133 (633)
                       ++... ...+.. ....+..++|+|+++++++ ...++.|++||+..  ++...  .+. ..      ..+..++|+||
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence             44321 111122 2346889999999996665 56788999999874  44322  221 11      45889999999


Q ss_pred             CCEEE-EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          134 DWILT-AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       134 G~~La-tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |++|+ +...++.|.+||+..............+...+.+++|+|+|++|+++           +..++.|.+|++.
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-----------~~~~~~v~v~~~d  316 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV-----------NQNTDNATLYARD  316 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE-----------ETTTTEEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE-----------EcCCCcEEEEEEe
Confidence            99885 55568999999997432211222222456678999999976665443           3345788889553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.58  E-value=9.6e-14  Score=142.95  Aligned_cols=195  Identities=10%  Similarity=0.110  Sum_probs=130.9

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCC-Cce
Q 006743            1 MYNCKDEHLASISL---SGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGR-SPK   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~---DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs-~DGtI~IWDl~t~-~~~   73 (633)
                      +|+|||+ |++++.   ++.|++|++.+++  .+..+.. +...+..++|+|+++ +|++++ .++.|.+||+... ...
T Consensus        46 a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~  122 (347)
T 3hfq_A           46 ALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALT  122 (347)
T ss_dssp             EECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEE
T ss_pred             EEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCee
Confidence            4899999 655544   6899999997665  3333322 334556799999998 555555 7899999999632 211


Q ss_pred             -eEEecc---------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeEe----eCCCCeEEEEEecCCCEEE
Q 006743           74 -VSWLKQ---------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-SRRPSSCI----TYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        74 -v~~l~~---------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr-tgk~v~~i----~h~~~ItsLafSPdG~~La  138 (633)
                       +..+..         +...+.+++|+|+++++++...++.|++||+. +++.....    .....+..++|+|||++|+
T Consensus       123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence             122211         12358899999999977777778899999998 55443221    2344688999999999776


Q ss_pred             E-EEcCCeEEEEECCCCCCce---EEEeecCC----CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          139 A-GTSNGRVVFYDIRGKPQPL---TVLRACSS----SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       139 t-Gs~DGsV~IWDlrs~~k~v---~~l~~~~H----~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      + +..++.|++|++......+   ..+.....    ...+..++|+|+|++|+           ++...++.|.+||+.
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~-----------v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY-----------VSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE-----------EEEETTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE-----------EEeCCCCEEEEEEEC
Confidence            6 4568899999987521111   12221111    14588999999876653           334457889999885

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.57  E-value=8.2e-14  Score=141.62  Aligned_cols=190  Identities=10%  Similarity=0.105  Sum_probs=136.0

Q ss_pred             CccCCCCEEEEE-ECCCcEEEEECCCCceeEEEeCCC-----CCcEEEEEEccCCCeEEEEEeCC------------CeE
Q 006743            1 MYNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPN-----EQVLRVLDYSRNSRHLLVTAGDD------------GTL   62 (633)
Q Consensus         1 AFSpdG~~LaSg-s~DG~I~IWDl~tgk~v~~~~~~~-----~~~VssLafSpdg~~lLaSGs~D------------GtI   62 (633)
                      +|+|+|++++++ ..++.|.+||+.+++.+..+...+     ...+..++|+|+++ +|++++.+            +.|
T Consensus        49 ~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i  127 (349)
T 1jmx_B           49 MMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRL  127 (349)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEE
T ss_pred             EECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeE
Confidence            478999876554 468999999999998887776433     22356789999998 56666654            899


Q ss_pred             EEEECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC------------------
Q 006743           63 HLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE------------------  122 (633)
Q Consensus        63 ~IWDl~t~~~~--v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~------------------  122 (633)
                      .+||+.+++..  +... .+...+.+++|+|+++ +++++.+  |++||+.+++.+..+...                  
T Consensus       128 ~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (349)
T 1jmx_B          128 EVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGPD--IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  203 (349)
T ss_dssp             EEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESSS--EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             EEEECCCccccceeeec-cCCCcccceeECCCCc-EEEccCc--EEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence            99999764321  2222 3445689999999999 5555444  999999988776554321                  


Q ss_pred             ---------------------------------------------------CCeEEEEEec-CCCEEEEEEcCCeEEEEE
Q 006743          123 ---------------------------------------------------APFSSLAFID-DDWILTAGTSNGRVVFYD  150 (633)
Q Consensus       123 ---------------------------------------------------~~ItsLafSP-dG~~LatGs~DGsV~IWD  150 (633)
                                                                         ..+.+++|+| ++++++++  ++.|++||
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d  281 (349)
T 1jmx_B          204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYD  281 (349)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEE
T ss_pred             CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEE
Confidence                                                               1345677889 99999988  88999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      +.+. +.+..+.   ....+.+++|+|++++|+.            ++.++.|++||+.....
T Consensus       282 ~~~~-~~~~~~~---~~~~~~~~~~s~dg~~l~~------------~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          282 LKQR-KLIKAAN---LDHTYYCVAFDKKGDKLYL------------GGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             TTTT-EEEEEEE---CSSCCCEEEECSSSSCEEE------------ESBSSEEEEEETTTTEE
T ss_pred             CccC-eEEEEEc---CCCCccceEECCCCCEEEE------------ecCCCeEEEEeccccce
Confidence            9886 3333333   3455789999997655433            34578999999865443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.57  E-value=3.2e-14  Score=161.17  Aligned_cols=181  Identities=13%  Similarity=0.139  Sum_probs=132.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC-----CceeEEEeCCCCCc-------------EEEEEEccCCCeEEEEEe-----
Q 006743            1 MYNCKDEHLASISLSGDLILHNLAS-----GAKAAELKDPNEQV-------------LRVLDYSRNSRHLLVTAG-----   57 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~t-----gk~v~~~~~~~~~~-------------VssLafSpdg~~lLaSGs-----   57 (633)
                      +|+|||++|+.+ .++.|++||+.+     ++.......+....             +.+++|+|||+ +|++++     
T Consensus       127 ~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~  204 (706)
T 2z3z_A          127 DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSM  204 (706)
T ss_dssp             EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTT
T ss_pred             cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCC
Confidence            489999999985 689999999988     76655444323322             46789999998 666665     


Q ss_pred             ----------------------------CCCeEEEEECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCC-----
Q 006743           58 ----------------------------DDGTLHLWDTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDK-----  103 (633)
Q Consensus        58 ----------------------------~DGtI~IWDl~t~~~~v~~l-~~H~~~VtsLafSPdg~~LaSgS~DG-----  103 (633)
                                                  .+..|++||+.+++...... ..|...+.+++|+||+++|++++.|+     
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  284 (706)
T 2z3z_A          205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC  284 (706)
T ss_dssp             SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred             CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence                                        44689999998876321111 25667899999999999999988776     


Q ss_pred             eEEEEeCCCC-ceeeEe--eCCC---CeEEEEEec--CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeE-EE
Q 006743          104 KLYTYDPGSR-RPSSCI--TYEA---PFSSLAFID--DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSS-LC  174 (633)
Q Consensus       104 tVrIWDlrtg-k~v~~i--~h~~---~ItsLafSP--dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~Vts-La  174 (633)
                      .|++||+.++ ......  ....   .+.+++|+|  ||++|+++..||.++||++......+..+.  .|...+.+ ++
T Consensus       285 ~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~  362 (706)
T 2z3z_A          285 KVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAG  362 (706)
T ss_dssp             EEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEE
T ss_pred             EEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeE
Confidence            8999999998 433333  2222   346789999  999999999999999998763323334443  56667776 79


Q ss_pred             EccCCCeEEEe
Q 006743          175 WQRAKPVFIDE  185 (633)
Q Consensus       175 fsPdg~~Las~  185 (633)
                      |+|+++.|+..
T Consensus       363 ~spdg~~l~~~  373 (706)
T 2z3z_A          363 FDPKGTRLYFE  373 (706)
T ss_dssp             ECTTSSEEEEE
T ss_pred             EcCCCCEEEEE
Confidence            99987766544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.56  E-value=7.1e-14  Score=166.99  Aligned_cols=175  Identities=10%  Similarity=0.174  Sum_probs=143.7

Q ss_pred             Ccc-CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEE-EEECCCCCceeEEec
Q 006743            1 MYN-CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH-LWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFS-pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~-IWDl~t~~~~v~~l~   78 (633)
                      +|+ |||++|++++ ++.|++|++.+++.. .+..+....+..++|+ +++ .|+.++.++.|. +||+.+..  ...+.
T Consensus       302 ~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~--~~~l~  375 (1045)
T 1k32_A          302 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGK--AEKFE  375 (1045)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEE-EEEEEETTEEEEEEEETTTCC--EEECC
T ss_pred             eecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCC-eEEEEECCCceEEEEECCCCC--ceEec
Confidence            478 9999999887 889999999877644 3444333378889999 887 677777788899 99998776  34455


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCC----------eEE
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNG----------RVV  147 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DG----------sV~  147 (633)
                      .|...+.+++|+||+++|++++.++.|++||+.+++..... .|...+.+++|+|||++|++++.++          .|+
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~  455 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  455 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEE
Confidence            78889999999999999999999999999999999887777 6888899999999999999887654          899


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +||+.++.  .  .....|...+.+++|+|+|++|+..
T Consensus       456 l~d~~~g~--~--~~l~~~~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          456 VYDMEGRK--I--FAATTENSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             EEETTTTE--E--EECSCSSSBEEEEEECTTSCEEEEE
T ss_pred             EEECCCCc--E--EEeeCCCcccCCceEcCCCCEEEEE
Confidence            99998862  2  3333678889999999987776654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.56  E-value=5e-14  Score=159.58  Aligned_cols=178  Identities=9%  Similarity=0.045  Sum_probs=129.4

Q ss_pred             CccCCCCEEEEEECC---------CcEEEEECCCCceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 006743            1 MYNCKDEHLASISLS---------GDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---------G~I~IWDl~tgk~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t   69 (633)
                      +|+|||++|++++.+         +.|++||+.+++. ..+..  .+...+..++|+|+|+ .|+.++. +.|++||+.+
T Consensus        67 ~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~  143 (723)
T 1xfd_A           67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVG  143 (723)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSS
T ss_pred             EECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCC
Confidence            489999999999774         7888999988875 33432  1233467789999998 5676665 8999999988


Q ss_pred             CCceeEEeccCCCCe------------------EEEEEcCCCCEEEEEeCCC----------------------------
Q 006743           70 RSPKVSWLKQHSAPT------------------AGISFSSDDKIIASVGLDK----------------------------  103 (633)
Q Consensus        70 ~~~~v~~l~~H~~~V------------------tsLafSPdg~~LaSgS~DG----------------------------  103 (633)
                      ++. ......+...+                  .+++|+|||++|++++.|+                            
T Consensus       144 g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  222 (723)
T 1xfd_A          144 KQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG  222 (723)
T ss_dssp             SCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred             Cce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence            764 33334333333                  7899999999999988653                            


Q ss_pred             ------eEEEEeCCCCceeeEee-C------CCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCCCCceEEEeecCC
Q 006743          104 ------KLYTYDPGSRRPSSCIT-Y------EAPFSSLAFIDDDWILTAGTS----NGRVVFYDIRGKPQPLTVLRACSS  166 (633)
Q Consensus       104 ------tVrIWDlrtgk~v~~i~-h------~~~ItsLafSPdG~~LatGs~----DGsV~IWDlrs~~k~v~~l~~~~H  166 (633)
                            .|++||+.+++....+. +      ...+..++|+|||++|++...    +..|++||+.++. ....+.. .+
T Consensus       223 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~-~~  300 (723)
T 1xfd_A          223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-CTKKHED-ES  300 (723)
T ss_dssp             SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-EEEEEEE-EC
T ss_pred             CCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEe-cc
Confidence                  79999999887544443 2      567899999999998877654    3579999998874 3333321 23


Q ss_pred             CCCee----EEEEccCCCeEEE
Q 006743          167 SEAVS----SLCWQRAKPVFID  184 (633)
Q Consensus       167 ~~~Vt----sLafsPdg~~Las  184 (633)
                      ...+.    .++|+|+|+.|+.
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEE
T ss_pred             CCEEeccCCCceEcCCCCeEEE
Confidence            44443    7899998877654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.55  E-value=8.3e-13  Score=136.93  Aligned_cols=194  Identities=8%  Similarity=0.093  Sum_probs=131.3

Q ss_pred             CCCEEEEEE-CCCcEEEEECCCCceeEE----Ee--CC-------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            5 KDEHLASIS-LSGDLILHNLASGAKAAE----LK--DP-------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         5 dG~~LaSgs-~DG~I~IWDl~tgk~v~~----~~--~~-------~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      +|++|++++ .++.|.+|++.....+..    +.  +.       +...+.+++|+|+++.+++++..++.|++|++...
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            788888776 578999999975433211    11  10       12235779999999855666666899999998754


Q ss_pred             Cc------e------eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeE--ee----CCCCeEEEEEe
Q 006743           71 SP------K------VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSC--IT----YEAPFSSLAFI  131 (633)
Q Consensus        71 ~~------~------v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v~~--i~----h~~~ItsLafS  131 (633)
                      ..      .      ......+...+.+++|+|+++++++++ .++.|++||+.+++....  +.    +...+.+++|+
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS  267 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC
T ss_pred             CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC
Confidence            42      1      122334456789999999999887777 689999999987754322  21    23457899999


Q ss_pred             cCCCEEEEEEcC--CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          132 DDDWILTAGTSN--GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       132 PdG~~LatGs~D--GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |||++|+++..+  +.|.+|++......+..+........+.+++|+|+|++|+++           +..++.|.+|++.
T Consensus       268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~-----------~~~~~~v~v~~~d  336 (361)
T 3scy_A          268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA-----------CRDTNVIQIFERD  336 (361)
T ss_dssp             TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE-----------ETTTTEEEEEEEC
T ss_pred             CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE-----------ECCCCCEEEEEEE
Confidence            999999777665  899999996321122222222225678899999987665544           2346778886553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.55  E-value=3.3e-14  Score=161.78  Aligned_cols=179  Identities=17%  Similarity=0.132  Sum_probs=131.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCc---------------EEEEEEccCCCeEEEEEeCCC-----
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQV---------------LRVLDYSRNSRHLLVTAGDDG-----   60 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~---------------VssLafSpdg~~lLaSGs~DG-----   60 (633)
                      +|+|||++|+.++ ++.|++||+.+++.......+....               +..++|+|||+ +|+.++.|+     
T Consensus       158 ~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~  235 (741)
T 2ecf_A          158 KLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPV  235 (741)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCE
T ss_pred             cCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCce
Confidence            4899999999887 5699999998876654443322211               36689999998 566666554     


Q ss_pred             ----------------------------eEEEEECCC-CCceeEEec-cCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 006743           61 ----------------------------TLHLWDTTG-RSPKVSWLK-QHSAPTAGISFSSDDKIIASVGL-----DKKL  105 (633)
Q Consensus        61 ----------------------------tI~IWDl~t-~~~~v~~l~-~H~~~VtsLafSPdg~~LaSgS~-----DGtV  105 (633)
                                                  .|++||+.+ ++....... .|...+.+++| ||+++|++++.     +..|
T Consensus       236 ~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i  314 (741)
T 2ecf_A          236 QKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL  314 (741)
T ss_dssp             EEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred             EecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence                                        889999988 763222111 47788999999 99999997764     5689


Q ss_pred             EEEeCCCCceeeEee-CC-C---CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEE-EEccCC
Q 006743          106 YTYDPGSRRPSSCIT-YE-A---PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSL-CWQRAK  179 (633)
Q Consensus       106 rIWDlrtgk~v~~i~-h~-~---~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsL-afsPdg  179 (633)
                      ++||+.+++....+. +. .   .+.+++|+|||++++++..||.++||.+..... ...+.  .|...|..+ .|+|++
T Consensus       315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~--~~~~~v~~~~~~s~dg  391 (741)
T 2ecf_A          315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT--HGNWSVDELLAVDEKA  391 (741)
T ss_dssp             EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC--CSSSCEEEEEEEETTT
T ss_pred             EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee--ecceEEEeEeEEeCCC
Confidence            999999998776664 22 2   456899999999999999999888887763323 34443  567778887 599987


Q ss_pred             CeEEEe
Q 006743          180 PVFIDE  185 (633)
Q Consensus       180 ~~Las~  185 (633)
                      +.|+..
T Consensus       392 ~~l~~~  397 (741)
T 2ecf_A          392 GLAYFR  397 (741)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            665443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.55  E-value=4.4e-14  Score=159.99  Aligned_cols=189  Identities=11%  Similarity=0.061  Sum_probs=134.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-----CCceeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-----RSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t-----~~~~v~   75 (633)
                      +|+|| ++++.+ .++.|++||+.+++......  +...+..++|+|+|+ .|+.+ .|+.|++||+.+     ++. ..
T Consensus        88 ~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~-~~  160 (706)
T 2z3z_A           88 LDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFD--TNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMSRA-IA  160 (706)
T ss_dssp             EETTT-TEEEEE-ETTEEEEEETTTTEEEEEEC--CTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCCCC-EE
T ss_pred             EECCC-CeEEEE-ECCEEEEEECCCCceEEccC--CcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCCCc-EE
Confidence            48899 666655 36999999998876654433  344566789999998 56664 679999999987     653 23


Q ss_pred             EeccCCCC--------------eEEEEEcCCCCEEEEEe---------------------------------CCCeEEEE
Q 006743           76 WLKQHSAP--------------TAGISFSSDDKIIASVG---------------------------------LDKKLYTY  108 (633)
Q Consensus        76 ~l~~H~~~--------------VtsLafSPdg~~LaSgS---------------------------------~DGtVrIW  108 (633)
                      ....+...              +.+++|+||+++|++++                                 .+..|++|
T Consensus       161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~  240 (706)
T 2z3z_A          161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY  240 (706)
T ss_dssp             SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred             eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence            23333332              48999999999999997                                 44689999


Q ss_pred             eCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEECCCCCCceEEEeecCCCC---CeeEEEEcc
Q 006743          109 DPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNG-----RVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQR  177 (633)
Q Consensus       109 Dlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DG-----sV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafsP  177 (633)
                      |+.+++.....   .+...+.+++|+|||++|++++.++     .|++||+.++........ ..+..   .+.+++|+|
T Consensus       241 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~sp  319 (706)
T 2z3z_A          241 HLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLTFLP  319 (706)
T ss_dssp             ETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCEECT
T ss_pred             ECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCceeec
Confidence            99998765544   3556799999999999999988776     899999998733222222 12222   346789998


Q ss_pred             --CCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          178 --AKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       178 --dg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                        +|++++++            ..|+.+++|++.
T Consensus       320 ~~dg~~l~~~------------~~~g~~~l~~~~  341 (706)
T 2z3z_A          320 GSNNQFIWQS------------RRDGWNHLYLYD  341 (706)
T ss_dssp             TCSSEEEEEE------------CTTSSCEEEEEE
T ss_pred             CCCCEEEEEE------------ccCCccEEEEEE
Confidence              76655443            445556666543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.53  E-value=7.9e-14  Score=160.54  Aligned_cols=196  Identities=11%  Similarity=0.077  Sum_probs=140.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCc----EEEEEEccCCCeEEEEEeCC---------CeEEEEEC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQV----LRVLDYSRNSRHLLVTAGDD---------GTLHLWDT   67 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~----VssLafSpdg~~lLaSGs~D---------GtI~IWDl   67 (633)
                      +|++||++|+++  ||.|++||+.+++....+.++....    ...+.|+|||+ +|+.++.+         +.+++||+
T Consensus        23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceEEEEEEC
Confidence            489999988886  9999999999999877777654322    23378999998 66776665         56779999


Q ss_pred             CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCe-----------------EEE
Q 006743           68 TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPF-----------------SSL  128 (633)
Q Consensus        68 ~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~I-----------------tsL  128 (633)
                      .+++  ...+..|...+..++|+|||+.|+.+. |+.|++||+.+++..+...  +...+                 ..+
T Consensus       100 ~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~  176 (740)
T 4a5s_A          100 NKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (740)
T ss_dssp             TTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCc--EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence            9887  345677888999999999999999985 6899999999887655432  22222                 358


Q ss_pred             EEecCCCEEEEEEcCC------------------------------------eEEEEECCC---CCC-ceEEEeec----
Q 006743          129 AFIDDDWILTAGTSNG------------------------------------RVVFYDIRG---KPQ-PLTVLRAC----  164 (633)
Q Consensus       129 afSPdG~~LatGs~DG------------------------------------sV~IWDlrs---~~k-~v~~l~~~----  164 (633)
                      .|+|||++|+.+..|.                                    .|++||+.+   +.. ....+...    
T Consensus       177 ~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~  256 (740)
T 4a5s_A          177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML  256 (740)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHH
T ss_pred             EECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCC
Confidence            9999999999875321                                    588899987   521 12223211    


Q ss_pred             CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          165 SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       165 ~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +|...+..++|+|||+.++.....        ...+..|++||+..
T Consensus       257 ~~~~~~~~~~wspdg~~~~~~~~r--------~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          257 IGDHYLCDVTWATQERISLQWLRR--------IQNYSVMDICDYDE  294 (740)
T ss_dssp             TSCEEEEEEEEEETTEEEEEEEES--------STTEEEEEEEEEET
T ss_pred             CCCeEEEEEEEeCCCeEEEEEeCC--------CCCEEEEEEEECCC
Confidence            377889999999998865543221        11234577777644

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.53  E-value=1.3e-12  Score=135.49  Aligned_cols=196  Identities=8%  Similarity=0.064  Sum_probs=130.5

Q ss_pred             CccCCCCEEEEEECC----CcEEEEECCC--Cce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            1 MYNCKDEHLASISLS----GDLILHNLAS--GAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         1 AFSpdG~~LaSgs~D----G~I~IWDl~t--gk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      +|+|||++|++++.+    +.|.+|++..  ++.  +..+.. +......+++  +++.++++...++.|.+|++.....
T Consensus        56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~  132 (361)
T 3scy_A           56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA  132 (361)
T ss_dssp             EECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred             EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence            589999999999876    7999998865  432  233332 3334555777  7774555555789999999965432


Q ss_pred             e---eEE--ec--------cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc-------e-------eeEeeCCCC
Q 006743           73 K---VSW--LK--------QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRR-------P-------SSCITYEAP  124 (633)
Q Consensus        73 ~---v~~--l~--------~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk-------~-------v~~i~h~~~  124 (633)
                      .   ...  ..        .+...+.+++|+|+++++++++ .++.|++|++....       .       .........
T Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  212 (361)
T 3scy_A          133 LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSG  212 (361)
T ss_dssp             BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC
T ss_pred             CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCC
Confidence            1   111  11        1233468899999999776655 57899999887533       1       112245667


Q ss_pred             eEEEEEecCCCEEEEEE-cCCeEEEEECCCCCC-ceEEEe-ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeC-C
Q 006743          125 FSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQ-PLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV-G  200 (633)
Q Consensus       125 ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k-~v~~l~-~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~-D  200 (633)
                      +..++|+|||++|++++ .++.|++||+.++.. .+..+. ...+...+.+++|+|+|++|+..           ... +
T Consensus       213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~-----------~~~~~  281 (361)
T 3scy_A          213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS-----------NRLKA  281 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE-----------ECSSS
T ss_pred             CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE-----------CCCCC
Confidence            88999999999888877 689999999985421 111122 12334557899999987766433           333 5


Q ss_pred             CeEEccCCCC
Q 006743          201 DSILMPDPLP  210 (633)
Q Consensus       201 g~IkIWDlr~  210 (633)
                      +.|.+|++.+
T Consensus       282 ~~i~v~~~~~  291 (361)
T 3scy_A          282 DGVAIFKVDE  291 (361)
T ss_dssp             CEEEEEEECT
T ss_pred             CEEEEEEEcC
Confidence            7899998853

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.53  E-value=7.8e-14  Score=154.99  Aligned_cols=184  Identities=16%  Similarity=0.123  Sum_probs=134.7

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCC---CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743            1 MYNCKDEHLASISL---SGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~---DG~I~IWDl~t---gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      +|+|| +.++++..   +....||.+..   +... .+...  ..+...+|+|+++.++++...++.+.|||+.+++.  
T Consensus        71 ~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~--  144 (582)
T 3o4h_A           71 HYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL--  144 (582)
T ss_dssp             CTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE--
T ss_pred             cCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE--
Confidence            58888 77777765   45455654432   3222 44322  23446789999876666666666666999988763  


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC--eEEE
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG--RVVF  148 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~D----GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG--sV~I  148 (633)
                      ..+..+..  .+++|+|||++|++++.|    +.|++||+.+++......+.+.+..++|+|||++|+++..++  .|++
T Consensus       145 ~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~  222 (582)
T 3o4h_A          145 RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVT  222 (582)
T ss_dssp             EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred             EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence            33333333  889999999999988877    789999999988876667888899999999999999888888  8999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEE--------EccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLC--------WQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLa--------fsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ||+.++.. . .+  ..|...+..++        |+|+|            .+++++..|+.+++|++
T Consensus       223 ~d~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~spdg------------~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          223 VDPRDGSV-E-DL--ELPSKDFSSYRPTAITWLGYLPDG------------RLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECTTTCCE-E-EC--CCSCSHHHHHCCSEEEEEEECTTS------------CEEEEEEETTEEEEEET
T ss_pred             EcCCCCcE-E-Ec--cCCCcChhhhhhccccceeEcCCC------------cEEEEEEcCCcEEEEEE
Confidence            99988742 2 33  36667777777        99864            44555567899999998

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.52  E-value=1.1e-13  Score=165.31  Aligned_cols=198  Identities=11%  Similarity=0.068  Sum_probs=150.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC----------CCCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP----------NEQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~----------~~~~VssLafS-pdg~~lLaSGs~DGtI~IWDl~t   69 (633)
                      +|+|||++|+.+ .++.|++||+... .+..+..+          +...+..++|+ |+|+ .|+.++ ++.|++|++.+
T Consensus       251 ~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          251 HLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             EEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTS
T ss_pred             eEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCC
Confidence            488999999887 4899999998443 44454431          12257789999 9998 566665 78999999987


Q ss_pred             CCceeEEeccCCC-CeEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 006743           70 RSPKVSWLKQHSA-PTAGISFSSDDKIIASVGLDKKLY-TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVV  147 (633)
Q Consensus        70 ~~~~v~~l~~H~~-~VtsLafSPdg~~LaSgS~DGtVr-IWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~  147 (633)
                      ..  ...+..|.. .+.+++|+ +++.|++++.++.|+ +||+.+++......+...+.+++|+|||++|++++.++.|+
T Consensus       327 ~~--~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~  403 (1045)
T 1k32_A          327 TY--VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM  403 (1045)
T ss_dssp             SB--EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             Cc--eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEE
Confidence            76  345677777 89999999 999999999988899 99999887665556778899999999999999999999999


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      +||+.++. ......  .|.+.+.+++|+|+|++|+.++...+...  .+..++.|++||+..
T Consensus       404 ~~d~~tg~-~~~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~--~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          404 TVDLETGK-PTVIER--SREAMITDFTISDNSRFIAYGFPLKHGET--DGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEETTTCC-EEEEEE--CSSSCCCCEEECTTSCEEEEEEEECSSTT--CSCCEEEEEEEETTT
T ss_pred             EEECCCCc-eEEecc--CCCCCccceEECCCCCeEEEEecCccccc--cCCCCCeEEEEECCC
Confidence            99998873 333333  68889999999999888876532110000  001235788888754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.51  E-value=8.8e-13  Score=138.25  Aligned_cols=200  Identities=13%  Similarity=0.098  Sum_probs=134.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC-CCceeEEEeCC-CCCcEEEEEEccCCCe-EEEEEe-------------CCCeEEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLA-SGAKAAELKDP-NEQVLRVLDYSRNSRH-LLVTAG-------------DDGTLHL   64 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~-tgk~v~~~~~~-~~~~VssLafSpdg~~-lLaSGs-------------~DGtI~I   64 (633)
                      +|+|+|++|++++.+ .|.+|++. +++........ ... ...++|+|+++. +++++.             .++.+.+
T Consensus        46 a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v  123 (365)
T 1jof_A           46 TFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV  123 (365)
T ss_dssp             EECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred             EECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence            479999999999888 99999997 77655433211 122 345889999974 344443             6899999


Q ss_pred             EECCC-CCceeEEec----cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCC-CCceee--Eee---CCCCeEEEEEec
Q 006743           65 WDTTG-RSPKVSWLK----QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPG-SRRPSS--CIT---YEAPFSSLAFID  132 (633)
Q Consensus        65 WDl~t-~~~~v~~l~----~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlr-tgk~v~--~i~---h~~~ItsLafSP  132 (633)
                      |++.. ++ ....+.    .+...+.+++|+|+|++|++++. ++.|++||+. +++...  .+.   +...+..++|+|
T Consensus       124 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp  202 (365)
T 1jof_A          124 FSVSETGK-LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             EEECTTCC-EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             EccCCCCc-CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC
Confidence            99974 33 222222    35678999999999998887764 6799999998 676532  232   356799999999


Q ss_pred             CCCEEEEEEc-CCeEEEEECCC--CCCc--eEEEeec-----CCCC------CeeEEE-EccCCCeEEEeccCCCCeEEE
Q 006743          133 DDWILTAGTS-NGRVVFYDIRG--KPQP--LTVLRAC-----SSSE------AVSSLC-WQRAKPVFIDETTCKAETALL  195 (633)
Q Consensus       133 dG~~LatGs~-DGsV~IWDlrs--~~k~--v~~l~~~-----~H~~------~VtsLa-fsPdg~~Las~s~~sd~~lLl  195 (633)
                      ||++|++++. ++.|.+|++..  +...  ...+...     +|..      .+.+++ |+|+|++|+......+.    
T Consensus       203 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~----  278 (365)
T 1jof_A          203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF----  278 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST----
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC----
Confidence            9999988775 68999998763  3211  1122211     1222      588999 99988776543110000    


Q ss_pred             EeeCCCeEEccCCC
Q 006743          196 GGAVGDSILMPDPL  209 (633)
Q Consensus       196 Sgs~Dg~IkIWDlr  209 (633)
                        ...+.|.+||+.
T Consensus       279 --~~~~~i~v~~~~  290 (365)
T 1jof_A          279 --ELQGYIAGFKLR  290 (365)
T ss_dssp             --TSCCEEEEEEEC
T ss_pred             --CCCCeEEEEEEC
Confidence              001289999885

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.50  E-value=1.6e-12  Score=136.27  Aligned_cols=198  Identities=7%  Similarity=0.023  Sum_probs=132.6

Q ss_pred             CccCCCCE--EEEEE-------------CCCcEEEEECC-CCceeEEEeC---CCCCcEEEEEEccCCCeEEEEEe-CCC
Q 006743            1 MYNCKDEH--LASIS-------------LSGDLILHNLA-SGAKAAELKD---PNEQVLRVLDYSRNSRHLLVTAG-DDG   60 (633)
Q Consensus         1 AFSpdG~~--LaSgs-------------~DG~I~IWDl~-tgk~v~~~~~---~~~~~VssLafSpdg~~lLaSGs-~DG   60 (633)
                      +|+|+|++  ++++.             .+|.+.+|++. +++....+..   .+...+.+++|+|+|+ +|+++. .++
T Consensus        89 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~  167 (365)
T 1jof_A           89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTAN  167 (365)
T ss_dssp             CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTT
T ss_pred             EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCC
Confidence            58999995  44553             68999999997 4665443331   2445678899999998 455554 478


Q ss_pred             eEEEEECC-CCCce-eEEec--cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCC--CCceee---Eee---C-----C
Q 006743           61 TLHLWDTT-GRSPK-VSWLK--QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPG--SRRPSS---CIT---Y-----E  122 (633)
Q Consensus        61 tI~IWDl~-t~~~~-v~~l~--~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlr--tgk~v~---~i~---h-----~  122 (633)
                      .|++||+. +++.. +..+.  .|...+..++|+|+++++++++. ++.|.+|++.  +++...   .+.   .     .
T Consensus       168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~  247 (365)
T 1jof_A          168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence            99999998 55522 12222  24667999999999999888775 6899999765  565421   121   1     1


Q ss_pred             C------CeEEEE-EecCCCEEEEEEcCC------eEEEEECCCCCCceEEEe-ecCCCCCeeEEEEcc---CCCeEEEe
Q 006743          123 A------PFSSLA-FIDDDWILTAGTSNG------RVVFYDIRGKPQPLTVLR-ACSSSEAVSSLCWQR---AKPVFIDE  185 (633)
Q Consensus       123 ~------~ItsLa-fSPdG~~LatGs~DG------sV~IWDlrs~~k~v~~l~-~~~H~~~VtsLafsP---dg~~Las~  185 (633)
                      .      .+..++ |+|||++|+++..+.      .|.+|++....+...... ...+...+..++|+|   +|++|+++
T Consensus       248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence            1      488999 999999988776432      899999963223222111 113455677889999   66665443


Q ss_pred             ccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          186 TTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       186 s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                                 +..++.|.+|++..
T Consensus       328 -----------~~~~~~v~v~~~~~  341 (365)
T 1jof_A          328 -----------DDQEGWLEIYRWKD  341 (365)
T ss_dssp             -----------CSSSCEEEEEEEET
T ss_pred             -----------EcCCCeEEEEEEch
Confidence                       22357888887754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.50  E-value=1.6e-12  Score=135.07  Aligned_cols=196  Identities=12%  Similarity=0.056  Sum_probs=139.4

Q ss_pred             CccCCCCEEEEEEC-CC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISL-SG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+|||++|+.++. +|  .|.+||+.+++....... +...+..++|+|+++ .|+.+..++.|++||+.+++. ....
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~-~~~~  118 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEE-NVVY  118 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCCE-EEEE
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCcc-eeee
Confidence            58999999999887 66  488899988776654443 444443468999998 788888889999999998874 3334


Q ss_pred             ccCCCCeEEEE--EcCCCCEEEEEe----------------------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEec-
Q 006743           78 KQHSAPTAGIS--FSSDDKIIASVG----------------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-  132 (633)
Q Consensus        78 ~~H~~~VtsLa--fSPdg~~LaSgS----------------------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSP-  132 (633)
                      ..+...+....  +++++++++...                      .+..|++||+.+++......+...+..++|+| 
T Consensus       119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY  198 (388)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence            44555554444  488999887532                      34689999999998777777788899999999 


Q ss_pred             CCCEEEEEEcC------CeEEEEECCCCCCceEEEeecCCC--CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743          133 DDWILTAGTSN------GRVVFYDIRGKPQPLTVLRACSSS--EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (633)
Q Consensus       133 dG~~LatGs~D------GsV~IWDlrs~~k~v~~l~~~~H~--~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik  204 (633)
                      ||+.|+....+      ..|++||+....  ...+.  .+.  ..+..++|+|+|+.|+..+...+       ..+..|+
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~--~~~~~~~~~~~~~spdg~~l~~~~~~~~-------~~~~~l~  267 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVK--THAEGESCTHEFWVPDGSALVYVSYLKG-------SPDRFIY  267 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESC--CCCTTEEEEEEEECTTSSCEEEEEEETT-------CCCEEEE
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEee--eCCCCcccccceECCCCCEEEEEecCCC-------CCcceEE
Confidence            99999877753      378888887652  23333  233  35888999999887765422111       1122488


Q ss_pred             ccCCCC
Q 006743          205 MPDPLP  210 (633)
Q Consensus       205 IWDlr~  210 (633)
                      +||+..
T Consensus       268 ~~d~~~  273 (388)
T 3pe7_A          268 SADPET  273 (388)
T ss_dssp             EECTTT
T ss_pred             EEecCC
Confidence            898854

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.50  E-value=7.6e-14  Score=158.63  Aligned_cols=178  Identities=16%  Similarity=0.157  Sum_probs=128.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCC---cEEEEEEccCCCeEEEEEeC---------CCeEEEEECC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQ---VLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTT   68 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~---~VssLafSpdg~~lLaSGs~---------DGtI~IWDl~   68 (633)
                      +|+|+|++++ .+.|+.|++||+.+++....+.. +..   .+.+++|+|||+ +|+.++.         ++.|++||+.
T Consensus        22 ~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           22 NWISGQEYLH-QSADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             EESSSSEEEE-ECTTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             EECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEECC
Confidence            4899996555 45799999999999887666543 221   267899999998 6666665         7899999998


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCe-----------------EEEE
Q 006743           69 GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPF-----------------SSLA  129 (633)
Q Consensus        69 t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~I-----------------tsLa  129 (633)
                      +++..  ........+.+++|+|||++|+.+. |+.|++||+.+++......  +...|                 .+++
T Consensus        99 ~g~~~--~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           99 NGEFV--RGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTEEC--CSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCccc--cceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            87631  0011235689999999999999986 7899999999887765432  22222                 4899


Q ss_pred             EecCCCEEEEEEcCC----------------------------------eEEEEECCCCCCc-eEEEe----ecCCCCCe
Q 006743          130 FIDDDWILTAGTSNG----------------------------------RVVFYDIRGKPQP-LTVLR----ACSSSEAV  170 (633)
Q Consensus       130 fSPdG~~LatGs~DG----------------------------------sV~IWDlrs~~k~-v~~l~----~~~H~~~V  170 (633)
                      |+|||++|+.++.|.                                  .|++||+.++... ...+.    ..+|...+
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence            999999999987652                                  7899999876321 01111    12577889


Q ss_pred             eEEEEccCCCeEEE
Q 006743          171 SSLCWQRAKPVFID  184 (633)
Q Consensus       171 tsLafsPdg~~Las  184 (633)
                      .+++|+||+++++.
T Consensus       256 ~~~~~SpD~~~~~~  269 (719)
T 1z68_A          256 SWLTWVTDERVCLQ  269 (719)
T ss_dssp             EEEEESSSSEEEEE
T ss_pred             EEeEEeCCCeEEEE
Confidence            99999998655544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.50  E-value=6.6e-12  Score=125.83  Aligned_cols=190  Identities=11%  Similarity=0.102  Sum_probs=137.3

Q ss_pred             CCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--cC
Q 006743            4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--QH   80 (633)
Q Consensus         4 pdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--~H   80 (633)
                      ++|+++++... ++.|.+|| .+++.+..+.......+..+++.++++ ++++...++.|++||.....  +..+.  .+
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~--~~~~~~~~~  162 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV--LHKFGCSKH  162 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE--EEEEECTTT
T ss_pred             CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCE--EEEeCCCCc
Confidence            45555554433 78999999 577777777544455678899999997 77777788999999976443  33332  44


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC---CCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---EAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGKPQ  156 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h---~~~ItsLafSPdG~~LatGs~DG-sV~IWDlrs~~k  156 (633)
                      ...+.+++++++++++++...++.|++||.. ++.+..+..   ...+..++++++|+++++...++ .|++||...  +
T Consensus       163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--~  239 (286)
T 1q7f_A          163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--Q  239 (286)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS--C
T ss_pred             cCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC--C
Confidence            5678999999999988888889999999985 455555532   25789999999999888888776 999999654  2


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      .+..+........+.+++++|+            +.++++ +.|+.|++|++....+
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~------------g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALMDD------------GSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEETT------------TEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EEEEEcccCCCCcceeEEECCC------------CcEEEE-CCCCeEEEEEcccccc
Confidence            3444443333345778999884            344555 3589999998765433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.50  E-value=3.6e-13  Score=149.68  Aligned_cols=186  Identities=10%  Similarity=0.049  Sum_probs=132.4

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC---CCeEEEEECCC--CCcee
Q 006743            1 MYNCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGTLHLWDTTG--RSPKV   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~---DGtI~IWDl~t--~~~~v   74 (633)
                      +|+|||++||.++. ||.+.||++.++ ....+..++...+..++|+|+ + ++++++.   +....||.+..  .....
T Consensus        28 ~~~~DG~~la~~s~~~g~~~lw~~~~g-~~~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~  104 (582)
T 3o4h_A           28 QGVVDGDKLLVVGFSEGSVNAYLYDGG-ETVKLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVNTSRPGEEQ  104 (582)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEETT-EEEECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred             ecCCCCCeEEEEEccCCceeEEEEcCC-CcEeeecccccccccccCCCC-e-EEEEeccCCCCcceEEEEEeccCCCccc
Confidence            47899999999887 999999998554 445565545467888999998 4 7777775   45556655532  22112


Q ss_pred             EEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC----CeEEE
Q 006743           75 SWLKQHSAPTAGISFSSDDK--IIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN----GRVVF  148 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~--~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D----GsV~I  148 (633)
                       .+..+ ..+...+|+|+++  .++++..| .+.+||+.+++......+..  .+++|+|||++|+.++.+    +.|++
T Consensus       105 -~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~  179 (582)
T 3o4h_A          105 -RLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFT  179 (582)
T ss_dssp             -ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             -cccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEE
Confidence             33333 3355778888775  34444444 45599999988776665444  889999999999988877    78999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC--eEEccCCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD--SILMPDPLP  210 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg--~IkIWDlr~  210 (633)
                      ||+.+++.  ..+.  .|.+.+..++|+|||++|+..            ..++  .|++||+..
T Consensus       180 ~d~~~g~~--~~l~--~~~~~~~~~~~SpDG~~l~~~------------~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          180 SNLSSGGL--RVFD--SGEGSFSSASISPGMKVTAGL------------ETAREARLVTVDPRD  227 (582)
T ss_dssp             EETTTCCC--EEEC--CSSCEEEEEEECTTSCEEEEE------------ECSSCEEEEEECTTT
T ss_pred             EcCCCCCc--eEee--cCCCccccceECCCCCEEEEc------------cCCCeeEEEEEcCCC
Confidence            99987742  3343  688889999999988777632            3455  788888754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.48  E-value=4.9e-14  Score=160.22  Aligned_cols=177  Identities=12%  Similarity=0.107  Sum_probs=125.0

Q ss_pred             CccCCCCEEEEEEC---------CCcEEEEECCCCcee--EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 006743            1 MYNCKDEHLASISL---------SGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         1 AFSpdG~~LaSgs~---------DG~I~IWDl~tgk~v--~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t   69 (633)
                      +|+|||++|+.++.         ++.|++||+.+++.+  ..+    ...+..++|+|||+ .|+.+. |+.|++||+.+
T Consensus        66 ~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~  139 (719)
T 1z68_A           66 GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPG  139 (719)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTT
T ss_pred             EECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCC-EEEEEE-CCeEEEEeCCC
Confidence            48999999998876         789999999888763  222    23467799999998 566654 78999999987


Q ss_pred             CCceeEEeccCCCCe-----------------EEEEEcCCCCEEEEEeCCC-----------------------------
Q 006743           70 RSPKVSWLKQHSAPT-----------------AGISFSSDDKIIASVGLDK-----------------------------  103 (633)
Q Consensus        70 ~~~~v~~l~~H~~~V-----------------tsLafSPdg~~LaSgS~DG-----------------------------  103 (633)
                      ++.......++...|                 .+++|+|||++|++++.|.                             
T Consensus       140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~  219 (719)
T 1z68_A          140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA  219 (719)
T ss_dssp             SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred             CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence            764321222333322                 4899999999999988652                             


Q ss_pred             -----eEEEEeCCCCcee---eE-----e-eCCCCeEEEEEecCCCEEEEEEcC----CeEEEEE----CCCCCCceEEE
Q 006743          104 -----KLYTYDPGSRRPS---SC-----I-TYEAPFSSLAFIDDDWILTAGTSN----GRVVFYD----IRGKPQPLTVL  161 (633)
Q Consensus       104 -----tVrIWDlrtgk~v---~~-----i-~h~~~ItsLafSPdG~~LatGs~D----GsV~IWD----lrs~~k~v~~l  161 (633)
                           .|++||+.+++..   ..     + .+...+..++|+||++++++....    ..|++||    +.++.. ...+
T Consensus       220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~  298 (719)
T 1z68_A          220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQ  298 (719)
T ss_dssp             CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGG
T ss_pred             CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEE
Confidence                 7899999987653   21     1 366779999999998777764432    2488899    766422 1111


Q ss_pred             e--ecCCCCCee-----EEEEccCCCeEEE
Q 006743          162 R--ACSSSEAVS-----SLCWQRAKPVFID  184 (633)
Q Consensus       162 ~--~~~H~~~Vt-----sLafsPdg~~Las  184 (633)
                      .  ...|.+.+.     .+.|+|+|+.++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          299 EHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             ecccccCCceEccccCCccEECCCCCeEEE
Confidence            0  025667776     8999998876543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.48  E-value=4e-12  Score=131.68  Aligned_cols=201  Identities=11%  Similarity=0.100  Sum_probs=150.7

Q ss_pred             CccCCCCEEEEEECC------------------------CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEE
Q 006743            1 MYNCKDEHLASISLS------------------------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA   56 (633)
Q Consensus         1 AFSpdG~~LaSgs~D------------------------G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSG   56 (633)
                      |++++|+++++...+                        +.|.+||..+++.+..+...+......|+++++++ ++++.
T Consensus        30 a~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d  108 (329)
T 3fvz_A           30 ALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTD  108 (329)
T ss_dssp             EECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEE
T ss_pred             EECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEE
Confidence            478999988887766                        47999999889887766544445678899999998 88888


Q ss_pred             eCCCeEEEEECCCCCceeEEe---------ccCCCCeEEEEEcC-CCCEEEEEe-CCCeEEEEeCCCCceeeEeeC-C--
Q 006743           57 GDDGTLHLWDTTGRSPKVSWL---------KQHSAPTAGISFSS-DDKIIASVG-LDKKLYTYDPGSRRPSSCITY-E--  122 (633)
Q Consensus        57 s~DGtI~IWDl~t~~~~v~~l---------~~H~~~VtsLafSP-dg~~LaSgS-~DGtVrIWDlrtgk~v~~i~h-~--  122 (633)
                      ..++.|++||..+....+..+         ..+-....+|+++| +++++++.+ .++.|++|| .+++.+..+.. .  
T Consensus       109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~  187 (329)
T 3fvz_A          109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG  187 (329)
T ss_dssp             TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS
T ss_pred             CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC
Confidence            889999999987653223444         34455789999999 888888886 699999999 55666666531 1  


Q ss_pred             --------CCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeE
Q 006743          123 --------APFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETA  193 (633)
Q Consensus       123 --------~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~l  193 (633)
                              .....++++|+ +.++++...++.|++||..++ +.+..+....+...+.+++|+| +..++.     ++..
T Consensus       188 ~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~p-g~~~~~-----~g~~  260 (329)
T 3fvz_A          188 SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIP-GFLFAV-----NGKP  260 (329)
T ss_dssp             SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEET-TEEEEE-----ECCC
T ss_pred             CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecC-CEEEEe-----CCCE
Confidence                    23889999998 777777778899999999865 4455555456778899999999 433333     2335


Q ss_pred             EEEeeCCCeEEccCCCC
Q 006743          194 LLGGAVGDSILMPDPLP  210 (633)
Q Consensus       194 LlSgs~Dg~IkIWDlr~  210 (633)
                      +++...+..|++||+..
T Consensus       261 ~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             CTTCSCCCCEEEEETTT
T ss_pred             EeccCCCcEEEEEEcCC
Confidence            55556677899998753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.40  E-value=3e-12  Score=147.31  Aligned_cols=178  Identities=7%  Similarity=-0.027  Sum_probs=125.0

Q ss_pred             ccCCCCEEEEEECC---------CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            2 YNCKDEHLASISLS---------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         2 FSpdG~~LaSgs~D---------G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      |||||++|+.++.+         +.+.+||+.+++... +.. +...+..++|+|||+ .|+.+ .|+.|++||+.++..
T Consensus        69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~-~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EER-IPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPS  144 (740)
T ss_dssp             ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSC-CCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCC
T ss_pred             ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-ccc-CCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCce
Confidence            69999999998876         667899999887543 443 445678899999998 45655 468999999987764


Q ss_pred             eeEEeccCCCCe-----------------EEEEEcCCCCEEEEEeCCC--------------------------------
Q 006743           73 KVSWLKQHSAPT-----------------AGISFSSDDKIIASVGLDK--------------------------------  103 (633)
Q Consensus        73 ~v~~l~~H~~~V-----------------tsLafSPdg~~LaSgS~DG--------------------------------  103 (633)
                      ...+..++...+                 ..+.|+|||++|+.++.|.                                
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~  224 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV  224 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence            322222333333                 3489999999999875331                                


Q ss_pred             ----eEEEEeCCC---C---ceeeEee------CCCCeEEEEEecCCCEEEEEEc----CCeEEEEECCCCC----C-ce
Q 006743          104 ----KLYTYDPGS---R---RPSSCIT------YEAPFSSLAFIDDDWILTAGTS----NGRVVFYDIRGKP----Q-PL  158 (633)
Q Consensus       104 ----tVrIWDlrt---g---k~v~~i~------h~~~ItsLafSPdG~~LatGs~----DGsV~IWDlrs~~----k-~v  158 (633)
                          .|++||+.+   +   +......      +...+..++|+|||+.++....    +..|++||+.++.    + .+
T Consensus       225 ~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~  304 (740)
T 4a5s_A          225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA  304 (740)
T ss_dssp             CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred             CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence                588899998   7   3333322      6667999999999997765543    2379999998874    1 11


Q ss_pred             EEEeecCCCCCee-----EEEEccCCCeEE
Q 006743          159 TVLRACSSSEAVS-----SLCWQRAKPVFI  183 (633)
Q Consensus       159 ~~l~~~~H~~~Vt-----sLafsPdg~~La  183 (633)
                      ..+....|...|.     .+.|+|||+.++
T Consensus       305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             GCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             EEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence            2221125666655     789999988765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.37  E-value=9.3e-11  Score=117.40  Aligned_cols=189  Identities=7%  Similarity=0.083  Sum_probs=133.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-----CCCCcEEEEEEc-cCCCeEEEEEeC-CCeEEEEECCCCCce
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD-----PNEQVLRVLDYS-RNSRHLLVTAGD-DGTLHLWDTTGRSPK   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-----~~~~~VssLafS-pdg~~lLaSGs~-DGtI~IWDl~t~~~~   73 (633)
                      +++++|+++++...++.|.+||.. ++.+..+..     .+...+..+++. +++. ++++... ++.|++||.. ++. 
T Consensus        36 ~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d~~-g~~-  111 (286)
T 1q7f_A           36 AVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQY-GQF-  111 (286)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEECTT-SCE-
T ss_pred             EECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEEECCC-CcE-
Confidence            367889888887889999999976 666666642     122457789994 5654 5555533 8999999954 332 


Q ss_pred             eEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743           74 VSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (633)
Q Consensus        74 v~~l-~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IW  149 (633)
                      +..+ ..+...+.+++++++++++++...++.|++||.. ++.+..+.   +...+.+++++++|+++++...++.|++|
T Consensus       112 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  190 (286)
T 1q7f_A          112 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF  190 (286)
T ss_dssp             EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred             EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence            3333 2344678999999999988888888999999965 55555553   34568999999999988887889999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC-eEEccCC
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD-SILMPDP  208 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg-~IkIWDl  208 (633)
                      |....  .+..+...++...+.+++++++|+++            ++...++ .|.+||.
T Consensus       191 ~~~g~--~~~~~~~~g~~~~p~~i~~d~~G~l~------------v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          191 NYEGQ--YLRQIGGEGITNYPIGVGINSNGEIL------------IADNHNNFNLTIFTQ  236 (286)
T ss_dssp             ETTCC--EEEEESCTTTSCSEEEEEECTTCCEE------------EEECSSSCEEEEECT
T ss_pred             cCCCC--EEEEEccCCccCCCcEEEECCCCCEE------------EEeCCCCEEEEEECC
Confidence            98543  33334322334678899999865444            4444454 8888884

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.36  E-value=1.7e-10  Score=117.85  Aligned_cols=193  Identities=12%  Similarity=0.124  Sum_probs=134.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC----CeEEEEECCCCCceeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD----GTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D----GtI~IWDl~t~~~~v~~   76 (633)
                      +|+++|++++++..++.|++||..+++....... ....+.+++|+++++ ++++...+    +.|.+||..+.... ..
T Consensus        51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~-~~  127 (333)
T 2dg1_A           51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQ-DI  127 (333)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCE-EE
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC-CCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEE-EE
Confidence            4788999777888899999999988776554432 446688999999987 66666665    68999999877632 12


Q ss_pred             ec--cCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEE-EcCCeEE
Q 006743           77 LK--QHSAPTAGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGRVV  147 (633)
Q Consensus        77 l~--~H~~~VtsLafSPdg~~LaSgS~------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatG-s~DGsV~  147 (633)
                      +.  .+...+++++++|+++++++...      .+.|..||..+++..........+..++|+|+|++|+++ ..++.|+
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence            22  34567999999999988877654      356888887766655444444568899999999866554 4678999


Q ss_pred             EEECCCCCCceEEE-----eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          148 FYDIRGKPQPLTVL-----RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       148 IWDlrs~~k~v~~l-----~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +||++.....+..+     ........+.+++++++|++            +++...++.|.+||.
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l------------~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL------------YVAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE------------EEEEETTTEEEEECT
T ss_pred             EEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCE------------EEEEcCCCEEEEECC
Confidence            99997432222211     11111146778888886543            444445678888876

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.34  E-value=2.6e-11  Score=125.95  Aligned_cols=202  Identities=9%  Similarity=-0.036  Sum_probs=131.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEE--EccCCCeEEEEE----------------------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLD--YSRNSRHLLVTA----------------------   56 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLa--fSpdg~~lLaSG----------------------   56 (633)
                      +|+|||++|+.+..++.|++||+.+++....+.. +...+....  +++++. +++..                      
T Consensus        87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhcc
Confidence            4899999999999999999999999887766654 333333333  488887 45432                      


Q ss_pred             eCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEeCCCCceeeEeeCC--CCeEE
Q 006743           57 GDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLD------KKLYTYDPGSRRPSSCITYE--APFSS  127 (633)
Q Consensus        57 s~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~D------GtVrIWDlrtgk~v~~i~h~--~~Its  127 (633)
                      ..+..|++||+.+++  ...+..+...+..++|+| +++.|+.+..+      ..|+++|+..+.......+.  ..+..
T Consensus       165 ~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH  242 (388)
T ss_dssp             CCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred             CCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence            244789999998876  455566777899999999 99999887763      37888998776655444443  35778


Q ss_pred             EEEecCCCEEEEEEc-CC----eEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeEEEeccCCCCeEEEEeeC
Q 006743          128 LAFIDDDWILTAGTS-NG----RVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVFIDETTCKAETALLGGAV  199 (633)
Q Consensus       128 LafSPdG~~LatGs~-DG----sV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafsPdg~~Las~s~~sd~~lLlSgs~  199 (633)
                      ++|+|||+.|+..+. ++    .|++||+.+++. ..+....++..   ....++|+|+|+.|+.....  + .......
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~-~~~~~~~  318 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD--D-SGYKIEN  318 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC---------------CC
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeee--c-cccccCC
Confidence            999999997765443 22    399999998742 12212111100   01223688888777653110  0 0011244


Q ss_pred             CCeEEccCCCC
Q 006743          200 GDSILMPDPLP  210 (633)
Q Consensus       200 Dg~IkIWDlr~  210 (633)
                      +..|++||+..
T Consensus       319 ~~~i~~~d~~~  329 (388)
T 3pe7_A          319 DPFLYVFNMKN  329 (388)
T ss_dssp             CCEEEEEETTT
T ss_pred             CCEEEEEeccC
Confidence            67888898754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.32  E-value=7.9e-11  Score=121.91  Aligned_cols=192  Identities=7%  Similarity=0.088  Sum_probs=136.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-eeEEEe--------CCCCCcEEEEEEcc-CCCeEEEEEe-CCCeEEEEECCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELK--------DPNEQVLRVLDYSR-NSRHLLVTAG-DDGTLHLWDTTG   69 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-~v~~~~--------~~~~~~VssLafSp-dg~~lLaSGs-~DGtI~IWDl~t   69 (633)
                      +++++|+++++...++.|++||..... .+..+.        ..+......|+++| ++. ++++.+ .++.|++||..+
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~~~g  175 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFSPSG  175 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEECTTS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEcCCC
Confidence            467899988888888999999975432 455552        12333577899999 565 777775 689999999544


Q ss_pred             CCceeEEecc----------CCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCC
Q 006743           70 RSPKVSWLKQ----------HSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDW  135 (633)
Q Consensus        70 ~~~~v~~l~~----------H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~  135 (633)
                      ..  +..+..          +-....+|+++|+ ++++++...++.|++||..+++.+..+.   +...+.+++++| +.
T Consensus       176 ~~--~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~  252 (329)
T 3fvz_A          176 KF--VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF  252 (329)
T ss_dssp             CE--EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE
T ss_pred             CE--EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE
Confidence            32  333332          2234899999997 7777777888999999999888887773   556789999999 33


Q ss_pred             EEEEE-------EcCCeEEEEECCCCCCceEEEe-ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          136 ILTAG-------TSNGRVVFYDIRGKPQPLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       136 ~LatG-------s~DGsV~IWDlrs~~k~v~~l~-~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      .++..       ..+..|++||..++. .+..+. ...+...+.+|+++|+|            .++++...++.|++|+
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG------------~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDG------------TVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTS------------EEEEEESSSCCEEEEE
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCC------------CEEEEECCCCEEEEEe
Confidence            33333       334589999998873 333332 12566778999999854            4556666788899988


Q ss_pred             CC
Q 006743          208 PL  209 (633)
Q Consensus       208 lr  209 (633)
                      +.
T Consensus       320 ~~  321 (329)
T 3fvz_A          320 LT  321 (329)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.31  E-value=1.6e-10  Score=116.78  Aligned_cols=187  Identities=11%  Similarity=0.064  Sum_probs=132.6

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+++|+ +++++..++.|..||..++  ...+.. ....+.+++++++++ ++++...++.|.+||..+++.. .....
T Consensus        34 ~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~-~~~~~  108 (296)
T 3e5z_A           34 VYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-PSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWE-SIADS  108 (296)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-SCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEE-EEECE
T ss_pred             eEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-CCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEE-EEeec
Confidence            4889998 6777888999999998776  555554 456678899999997 6666666789999999766632 22111


Q ss_pred             ----CCCCeEEEEEcCCCCEEEEE----e-------------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEE
Q 006743           80 ----HSAPTAGISFSSDDKIIASV----G-------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        80 ----H~~~VtsLafSPdg~~LaSg----S-------------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~La  138 (633)
                          ....+++++++|+|+++++.    .             ..+.|..+|.. ++.............++|+|+++.++
T Consensus       109 ~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv  187 (296)
T 3e5z_A          109 FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLV  187 (296)
T ss_dssp             ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEE
T ss_pred             cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEE
Confidence                12356789999999988873    3             13467777776 55554455667789999999999997


Q ss_pred             EEEcCCeEEEEECCCCCCc---eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          139 AGTSNGRVVFYDIRGKPQP---LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~k~---v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +...++.|++||+......   ...+  ..+...+.+++++++|+++            ++.  ++.|.+||..
T Consensus       188 ~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~------------v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          188 SDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIW------------ASA--GDGVHVLTPD  245 (296)
T ss_dssp             EETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEE------------EEE--TTEEEEECTT
T ss_pred             EeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEE------------EEc--CCeEEEECCC
Confidence            7777899999999732222   2233  2355667788888865433            333  6778888763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.30  E-value=2.8e-11  Score=135.92  Aligned_cols=176  Identities=10%  Similarity=-0.016  Sum_probs=123.0

Q ss_pred             ccCCCCEEEEE--ECCCcEEEEECCCCceeEEEeCCCCCcEE---------EEEEc--cCCCe-EEEEEeCCCeEEEEEC
Q 006743            2 YNCKDEHLASI--SLSGDLILHNLASGAKAAELKDPNEQVLR---------VLDYS--RNSRH-LLVTAGDDGTLHLWDT   67 (633)
Q Consensus         2 FSpdG~~LaSg--s~DG~I~IWDl~tgk~v~~~~~~~~~~Vs---------sLafS--pdg~~-lLaSGs~DGtI~IWDl   67 (633)
                      |++++-+++..  +.++...||....+.....+..+. ..+.         ...|+  ||++. ++++...+..|++|++
T Consensus        31 ~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~  109 (662)
T 3azo_A           31 AVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEP  109 (662)
T ss_dssp             EETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECT
T ss_pred             EcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcC
Confidence            45554455555  447889999865555556666533 2333         34565  99985 4444444677888887


Q ss_pred             C--C-CCceeEEecc-----CCCCeEEEEEcCCCCEEEEEeCC----------CeEEEEeCCC------CceeeEe-eCC
Q 006743           68 T--G-RSPKVSWLKQ-----HSAPTAGISFSSDDKIIASVGLD----------KKLYTYDPGS------RRPSSCI-TYE  122 (633)
Q Consensus        68 ~--t-~~~~v~~l~~-----H~~~VtsLafSPdg~~LaSgS~D----------GtVrIWDlrt------gk~v~~i-~h~  122 (633)
                      .  + +.  ...+..     |...+.+++|+|||+.|++++.|          ..|++||+.+      ++..... .+.
T Consensus       110 ~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~  187 (662)
T 3azo_A          110 DAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH  187 (662)
T ss_dssp             TSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS
T ss_pred             CCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC
Confidence            6  3 44  344555     66788999999999999999877          5899999998      6665555 556


Q ss_pred             CCeEEEEEecCCCEEEEEEcCC--------eEEEEECCC-CC--CceEEEeecCCCCCeeEEEEccCCCeE
Q 006743          123 APFSSLAFIDDDWILTAGTSNG--------RVVFYDIRG-KP--QPLTVLRACSSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       123 ~~ItsLafSPdG~~LatGs~DG--------sV~IWDlrs-~~--k~v~~l~~~~H~~~VtsLafsPdg~~L  182 (633)
                      ..+..++|+|||++|+.++.++        .|++||+.. +.  ....+..  .|...+..++|+|+|+++
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~--~~~~~~~~~~~spdg~l~  256 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG--GPEEAIAQAEWAPDGSLI  256 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE--ETTBCEEEEEECTTSCEE
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC--CCCceEcceEECCCCeEE
Confidence            6788899999999999887553        799999983 41  2222222  456889999999987643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.29  E-value=3.4e-11  Score=135.22  Aligned_cols=165  Identities=16%  Similarity=0.090  Sum_probs=118.5

Q ss_pred             CccCCCCEEEEEECC----------CcEEEEECCC------CceeEEEe-CCCCCcEEEEEEccCCCeEEEEEeCC----
Q 006743            1 MYNCKDEHLASISLS----------GDLILHNLAS------GAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDD----   59 (633)
Q Consensus         1 AFSpdG~~LaSgs~D----------G~I~IWDl~t------gk~v~~~~-~~~~~~VssLafSpdg~~lLaSGs~D----   59 (633)
                      +|+|||++|+.++.+          ..|++||+.+      ++. ..+. . +...+..++|+|||+ +|+.++.+    
T Consensus       136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~SpDG~-~la~~~~~~~~~  212 (662)
T 3azo_A          136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDD-AHRFVTGPRLSPDGR-QAVWLAWDHPRM  212 (662)
T ss_dssp             EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCS-CSSEECCCEECTTSS-EEEEEEECTTCC
T ss_pred             EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEec-CCCcccCceECCCCC-EEEEEECCCCCC
Confidence            489999999988876          5899999987      443 4444 3 335566789999998 56655544    


Q ss_pred             ----CeEEEEECC-CCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeeEeeCCCC------
Q 006743           60 ----GTLHLWDTT-GRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--KLYTYDPGSRRPSSCITYEAP------  124 (633)
Q Consensus        60 ----GtI~IWDl~-t~~--~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG--tVrIWDlrtgk~v~~i~h~~~------  124 (633)
                          ..|++||+. ++.  ........|...+..++|+|||++++++..++  .|++||+.+++......+...      
T Consensus       213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w  292 (662)
T 3azo_A          213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW  292 (662)
T ss_dssp             TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred             CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence                479999998 451  22333445678899999999999888888888  788888877776554432211      


Q ss_pred             ---eEEEEEecCCCEEEEEEcCCeEEEE--ECCCCCCceEEEeecCCCCCeeEE
Q 006743          125 ---FSSLAFIDDDWILTAGTSNGRVVFY--DIRGKPQPLTVLRACSSSEAVSSL  173 (633)
Q Consensus       125 ---ItsLafSPdG~~LatGs~DGsV~IW--Dlrs~~k~v~~l~~~~H~~~VtsL  173 (633)
                         +.+++|+|++++++++.. +.++||  |+.++  .+..+.  .|...+..+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~--~~~~l~--~~~~~~~~~  341 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG--ELVDAA--GPWTEWAAT  341 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT--EEEECC--SSCCEEEEE
T ss_pred             cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC--cEEEec--CCCCeEEEE
Confidence               567899999999999998 999999  55444  233333  556666666

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.29  E-value=1.1e-11  Score=128.37  Aligned_cols=198  Identities=11%  Similarity=0.015  Sum_probs=131.7

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+|||++|+.....   ..|++||+.+++... +..+.......+.|+|+++ .|+.++.++.|++||+.+++. ....
T Consensus        42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~~~~-~~~~  118 (396)
T 3c5m_A           42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDER-AFFYVKNELNLMKVDLETLEE-QVIY  118 (396)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSS-EEEEEETTTEEEEEETTTCCE-EEEE
T ss_pred             cCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCC-EEEEEEcCCcEEEEECCCCCc-EEEE
Confidence            589999998877543   368899988776543 3332333233368999998 788888888999999988763 2233


Q ss_pred             ccCCCCeEE-------------------EEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeeEeeCCCCeEEEEEec-
Q 006743           78 KQHSAPTAG-------------------ISFSSDDKIIASV-----GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-  132 (633)
Q Consensus        78 ~~H~~~Vts-------------------LafSPdg~~LaSg-----S~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSP-  132 (633)
                      ..+......                   ++|+|+++.++.+     ..+..|++||+.+++......+...+..+.|+| 
T Consensus       119 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~  198 (396)
T 3c5m_A          119 TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPF  198 (396)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCC
Confidence            333332222                   3456777766554     356689999999988777777778899999999 


Q ss_pred             CCCEEEEEEcC------CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcc
Q 006743          133 DDWILTAGTSN------GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (633)
Q Consensus       133 dG~~LatGs~D------GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIW  206 (633)
                      ++..|+..+.+      ..|++||+.+..  ...+........+..++|+|+|++|+..+...+       ..++.|++|
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~-------~~~~~l~~~  269 (396)
T 3c5m_A          199 DDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG-------QTDRVIYKA  269 (396)
T ss_dssp             EEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETT-------TCCEEEEEE
T ss_pred             CCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCEEEEEecCCC-------CccceEEEE
Confidence            78877766543      368899987652  122221111235888999999887765422111       112448889


Q ss_pred             CCCC
Q 006743          207 DPLP  210 (633)
Q Consensus       207 Dlr~  210 (633)
                      |+..
T Consensus       270 d~~~  273 (396)
T 3c5m_A          270 NPET  273 (396)
T ss_dssp             CTTT
T ss_pred             ECCC
Confidence            8753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.27  E-value=2.6e-11  Score=125.52  Aligned_cols=197  Identities=7%  Similarity=-0.036  Sum_probs=130.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEE-------------------EEEccCCCeEEEEE-----e
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV-------------------LDYSRNSRHLLVTA-----G   57 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vss-------------------LafSpdg~~lLaSG-----s   57 (633)
                      |+|||++|+.++.++.|++||+.+++....+..+. .....                   ++|+|+++. ++.+     .
T Consensus        88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~~~~  165 (396)
T 3c5m_A           88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE-EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW-EKFAEFYHTN  165 (396)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-HHHHHHHHTC
T ss_pred             ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc-ccCCCCCEEEeccCCccccccccccccCCCCcc-eeeeeeccCC
Confidence            79999999999999999999998887665554322 22222                   245666663 3322     4


Q ss_pred             CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEeCCCCceeeEeeC--CCCeEEE
Q 006743           58 DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLD------KKLYTYDPGSRRPSSCITY--EAPFSSL  128 (633)
Q Consensus        58 ~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~D------GtVrIWDlrtgk~v~~i~h--~~~ItsL  128 (633)
                      .+..|++||+.+++.  ..+..+...+..+.|+| +++.|+.++.+      ..|++||+..++......+  ...+..+
T Consensus       166 ~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (396)
T 3c5m_A          166 PTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE  243 (396)
T ss_dssp             CCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred             CcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence            567899999988763  34446777899999999 88877776653      3689999877654444332  2357889


Q ss_pred             EEecCCCEEEEEEcC-----CeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEE------EE
Q 006743          129 AFIDDDWILTAGTSN-----GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETAL------LG  196 (633)
Q Consensus       129 afSPdG~~LatGs~D-----GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP-dg~~Las~s~~sd~~lL------lS  196 (633)
                      +|+|||++|+.++.+     +.|++||+.++. ...+.. .  .. .. +.|+| +|++++....  +..+.      +.
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~-~--~~-~~-~~~s~~dg~~l~~~~~--~~p~~~~~~~~~~  315 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-NEEVMV-M--PP-CS-HLMSNFDGSLMVGDGC--DAPVDVADADSYN  315 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTCC-EEEEEE-C--CS-EE-EEEECSSSSEEEEEEC--CC----------C
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCCC-eEEeee-C--CC-CC-CCccCCCCceEEEecC--Ccceeeccccccc
Confidence            999999988776554     459999998763 222222 1  11 23 88999 8887765421  11000      01


Q ss_pred             eeCCCeEEccCCCC
Q 006743          197 GAVGDSILMPDPLP  210 (633)
Q Consensus       197 gs~Dg~IkIWDlr~  210 (633)
                      ...+..|.+||+..
T Consensus       316 ~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          316 IENDPFLYVLNTKA  329 (396)
T ss_dssp             CCCCCEEEEEETTT
T ss_pred             cCCCCcEEEEeccc
Confidence            12357888898753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.25  E-value=3e-10  Score=129.88  Aligned_cols=190  Identities=10%  Similarity=0.056  Sum_probs=127.3

Q ss_pred             CccCCCCEEEEEECCC-----cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--------------
Q 006743            1 MYNCKDEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--------------   61 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG-----~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--------------   61 (633)
                      +|+|||++||.+..++     .|++||+.+++.+.......  .+..++|+||++ .|+.+..++.              
T Consensus       131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~--~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV--KFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE--CSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc--ccceEEEEeCCC-EEEEEEECCccccccccccccCCC
Confidence            4899999998776543     89999999988765432211  145689999998 5666666554              


Q ss_pred             --EEEEECCCCCce-eEEe--ccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEeCCC------C--ceeeEeeCCC
Q 006743           62 --LHLWDTTGRSPK-VSWL--KQHSAPTAGISFSSDDKIIASVGL-----DKKLYTYDPGS------R--RPSSCITYEA  123 (633)
Q Consensus        62 --I~IWDl~t~~~~-v~~l--~~H~~~VtsLafSPdg~~LaSgS~-----DGtVrIWDlrt------g--k~v~~i~h~~  123 (633)
                        |++|++.+.... ....  ..|...+..+.|+||+++|+.++.     +..|++||+.+      +  .......+..
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~  287 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE  287 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred             CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence              999999876532 1222  235566889999999999988765     56899999986      4  3333444555


Q ss_pred             CeEEEEEecCCCEEEEEEcC----CeEEEEECCCCCC-ceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743          124 PFSSLAFIDDDWILTAGTSN----GRVVFYDIRGKPQ-PLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLG  196 (633)
Q Consensus       124 ~ItsLafSPdG~~LatGs~D----GsV~IWDlrs~~k-~v~~l~~~~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlS  196 (633)
                      .+.. .|+++|..|+..+.+    +.|++||+.+... ....+.  .|..  .+..++|.++            +.++++
T Consensus       288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~------------~~lv~~  352 (710)
T 2xdw_A          288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVRS------------NFLVLC  352 (710)
T ss_dssp             SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCEEEEEEEETT------------TEEEEE
T ss_pred             cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--CCCCCCeEEEEEEEcC------------CEEEEE
Confidence            5554 588999888876653    3699999987632 223333  3333  6778888753            344445


Q ss_pred             eeCCCe--EEccCC
Q 006743          197 GAVGDS--ILMPDP  208 (633)
Q Consensus       197 gs~Dg~--IkIWDl  208 (633)
                      ...|+.  |.+||+
T Consensus       353 ~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          353 YLHDVKNTLQLHDL  366 (710)
T ss_dssp             EEETTEEEEEEEET
T ss_pred             EEECCEEEEEEEEC
Confidence            555664  444554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.24  E-value=9.8e-11  Score=126.40  Aligned_cols=169  Identities=8%  Similarity=0.004  Sum_probs=128.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-----------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA-----------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-----------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t   69 (633)
                      ++++...++++|+.+ .+.+|++.+..           ....+.  ... |+.|+|  ++. +|+++ .++.|++||+..
T Consensus        44 ais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~-~L~v~-~~~~l~v~dv~s  115 (388)
T 1xip_A           44 DISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGD-QVLVS-TRNALYSLDLEE  115 (388)
T ss_dssp             EEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETT-EEEEE-ESSEEEEEESSS
T ss_pred             EEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCC-EEEEE-cCCcEEEEEchh
Confidence            357788899999887 56669875432           112232  334 889999  666 77777 889999999987


Q ss_pred             CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743           70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (633)
Q Consensus        70 ~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IW  149 (633)
                      ... ......|...|.++.+.+.  .++++..||.|.+||+.++....   +...|.|++|+|+|  ++.|..||.|++|
T Consensus       116 l~~-~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~  187 (388)
T 1xip_A          116 LSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSF  187 (388)
T ss_dssp             TTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEE
T ss_pred             hhc-cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEE
Confidence            663 4456677888998888754  38999999999999999887654   34689999999999  7889999999999


Q ss_pred             ECCCCCCc-eEEEee-------cCCCCCeeEEEEccCCCeEEEe
Q 006743          150 DIRGKPQP-LTVLRA-------CSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       150 Dlrs~~k~-v~~l~~-------~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +....... .+.+..       .+|...|.+|+|.+++.++++.
T Consensus       188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            98876310 233311       1478899999999999998864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.23  E-value=2.1e-10  Score=117.38  Aligned_cols=177  Identities=14%  Similarity=0.202  Sum_probs=116.7

Q ss_pred             CccCCCCEEEEEECC---C--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC-----------------
Q 006743            1 MYNCKDEHLASISLS---G--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-----------------   58 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---G--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~-----------------   58 (633)
                      +|+|||++|+.++.+   +  .|++||+.+++....... . . +..++|+|+++.+++++..                 
T Consensus        65 ~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           65 RISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             EECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S-E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             EECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            489999999987654   3  488889887766554443 2 3 8889999999844444322                 


Q ss_pred             ---------CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC---------eEEEEeCCCCceeeEee
Q 006743           59 ---------DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK---------KLYTYDPGSRRPSSCIT  120 (633)
Q Consensus        59 ---------DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG---------tVrIWDlrtgk~v~~i~  120 (633)
                               ...|++||+.+++. +..+.. . .+..++|+|++ +++++..+.         .|+++|  +++......
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  215 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE  215 (347)
T ss_dssp             --------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEecc
Confidence                     25799999987763 133333 3 78899999999 777776542         455566  555544444


Q ss_pred             CCCCeEEEEEecCCCEEEEEEcC--------CeEEEEECCCCCCceEEEeecCCCCCeeE-EEEccCCCeEEEeccCCCC
Q 006743          121 YEAPFSSLAFIDDDWILTAGTSN--------GRVVFYDIRGKPQPLTVLRACSSSEAVSS-LCWQRAKPVFIDETTCKAE  191 (633)
Q Consensus       121 h~~~ItsLafSPdG~~LatGs~D--------GsV~IWDlrs~~k~v~~l~~~~H~~~Vts-LafsPdg~~Las~s~~sd~  191 (633)
                      + ..+..+  +|||++|+.++.+        ..|++||  ++ +. ..+. ..|...+.. +.|+ ++            
T Consensus       216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~-~~l~-~~~~~~~~~~~~~s-dg------------  274 (347)
T 2gop_A          216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-EV-MGIL-DEVDRGVGQAKIKD-GK------------  274 (347)
T ss_dssp             E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS-CE-EESS-TTCCSEEEEEEEET-TE------------
T ss_pred             C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC-ce-Eecc-ccCCcccCCccEEc-Cc------------
Confidence            4 455544  9999998877754        4688888  33 22 2221 245667775 7776 54            


Q ss_pred             eEEEEeeCCCeEEccCCC
Q 006743          192 TALLGGAVGDSILMPDPL  209 (633)
Q Consensus       192 ~lLlSgs~Dg~IkIWDlr  209 (633)
                       +++.+..++.+++| +.
T Consensus       275 -~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          275 -VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             -EEEEEEETTEEEEE-EE
T ss_pred             -EEEEEecCCcEEEE-Ec
Confidence             34444567788888 65

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.23  E-value=1.2e-09  Score=107.83  Aligned_cols=191  Identities=8%  Similarity=0.019  Sum_probs=134.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +++++|+.+++.. ++.|.+||..... ...+.......+..+++.+++. ++++...++.|.+|+..+... .......
T Consensus        73 ~~~~~g~l~v~~~-~~~i~~~d~~~~~-~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~-~~~~~~~  148 (270)
T 1rwi_B           73 AVDGAGTVYVTDF-NNRVVTLAAGSNN-QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ-TVLPFTG  148 (270)
T ss_dssp             EECTTCCEEEEET-TTEEEEECTTCSC-CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC-EECCCCS
T ss_pred             EECCCCCEEEEcC-CCEEEEEeCCCce-EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee-Eeecccc
Confidence            3677888555544 8899999976543 3334322335678899999987 777777789999998655442 2222233


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...+.+++++++++++++...++.|.+||.......... .....+.+++++++|.++++...++.|++||......  .
T Consensus       149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--~  226 (270)
T 1rwi_B          149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--T  226 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--E
T ss_pred             CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--e
Confidence            346789999999997777777889999999876654332 2336789999999997777777788999999976532  1


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      . ....+...+.+++++++|            .++++...++.|+++++..
T Consensus       227 ~-~~~~~~~~p~~i~~~~~g------------~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          227 V-LPFTGLNTPLAVAVDSDR------------TVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             E-CCCCSCSCEEEEEECTTC------------CEEEEEGGGTEEEEECCCG
T ss_pred             e-eccCCCCCceeEEECCCC------------CEEEEECCCCEEEEEcCCC
Confidence            1 111334578899998854            3455556789999998753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.20  E-value=7.9e-10  Score=112.90  Aligned_cols=171  Identities=9%  Similarity=-0.021  Sum_probs=129.0

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-CC
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-SA   82 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H-~~   82 (633)
                      ..++.|++++.++.|++||.++|+.+.++..+....+.++.+.|+|+ +|+  +.++.|+.||. +++. +-.+..+ ..
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~   77 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRE-LWNIAAPAGC   77 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCE-EEEEECCTTC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCE-EEEEcCCCCc
Confidence            34788999999999999999999999999864434567889999997 666  45788999999 5553 4444443 35


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEeeCC-------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           83 PTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCITYE-------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i~h~-------~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      .+.++.+.++|+++++.+. ++.|..+|. +++.+..+...       .....+++.++|++|++...++.|++||.. +
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            7889999999999999887 788888886 67766655311       234556788999999999999999999998 5


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                       +.+..+.   ....+.++.+.++|++++++
T Consensus       156 -~~~w~~~---~~~~~~~~~~~~~g~~~v~~  182 (276)
T 3no2_A          156 -QLLNSVK---LSGTPFSSAFLDNGDCLVAC  182 (276)
T ss_dssp             -CEEEEEE---CSSCCCEEEECTTSCEEEEC
T ss_pred             -CEEEEEE---CCCCccceeEcCCCCEEEEe
Confidence             3334444   23456677777877766654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.19  E-value=4.3e-10  Score=114.88  Aligned_cols=188  Identities=12%  Similarity=0.116  Sum_probs=133.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|++++..++....++.++.|   .++....+.. +...+.+++|+++++ +++++..++.|++||..+++. ......+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~-~~~~~~~   85 (333)
T 2dg1_A           12 FYSGKSNSAVPIISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEI-KRPFVSH   85 (333)
T ss_dssp             CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE-EEEEECS
T ss_pred             eecCCccceeEEeecccCccc---ccceeEEEec-cCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcE-EEEeeCC
Confidence            467777777777778888999   3455556654 334568899999987 777888899999999987763 2223356


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEc------CCeEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTS------NGRVV  147 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~D----GtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~------DGsV~  147 (633)
                      ...+.+++|+++++++++...+    +.|.+||..+++....+.   ....+.+++++|+|+++++...      .+.|+
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence            6789999999999988887766    689999998877653332   4457999999999987776653      35677


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .||..+.. . ..+.  .+...+.+++|+|++++++           ++...++.|.+||+.
T Consensus       166 ~~~~~~~~-~-~~~~--~~~~~~~~i~~~~dg~~l~-----------v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          166 YVSPDFRT-V-TPII--QNISVANGIALSTDEKVLW-----------VTETTANRLHRIALE  212 (333)
T ss_dssp             EECTTSCC-E-EEEE--EEESSEEEEEECTTSSEEE-----------EEEGGGTEEEEEEEC
T ss_pred             EEeCCCCE-E-EEee--cCCCcccceEECCCCCEEE-----------EEeCCCCeEEEEEec
Confidence            77766542 2 2222  1234578899999765443           333446778888774

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.18  E-value=9.5e-10  Score=114.16  Aligned_cols=189  Identities=8%  Similarity=0.004  Sum_probs=130.8

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCC----CcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCceeE
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNE----QVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~----~~VssLafSpdg~~lLaSGs-~DGtI~IWDl~t~~~~v~   75 (633)
                      ++++| .++++. .++.|.+||..+++....+.....    .....+++ . +..++++.. .++.|.+||..+.+. +.
T Consensus        91 ~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~-~~  166 (328)
T 3dsm_A           91 FLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKV-VD  166 (328)
T ss_dssp             EEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEE-EE
T ss_pred             EeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeE-EE
Confidence            56777 455555 789999999999988877764321    03345667 3 443555544 489999999988763 33


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCCceeeEeeC--CCCeEEEEEecCCCEEEEEEcC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLD----------KKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~D----------GtVrIWDlrtgk~v~~i~h--~~~ItsLafSPdG~~LatGs~D  143 (633)
                      .+.. .....+++++|++++++++..+          +.|.+||..+++....+..  ......++|+|+++.|+++.. 
T Consensus       167 ~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          167 ELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             EEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred             EEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence            3333 3446789999999877776655          7899999999988766643  447899999999999988765 


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe----eCCCeEEccCCC
Q 006743          144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG----AVGDSILMPDPL  209 (633)
Q Consensus       144 GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg----s~Dg~IkIWDlr  209 (633)
                       .|++||..+.+.....+. ..+.....+++++|++           +.++++.    ..++.|.+||..
T Consensus       245 -~v~~~d~~t~~~~~~~~~-~~~~~~p~gi~vdp~~-----------g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFL-EFRDTKYYGLTVNPNN-----------GEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSB-CCCSSCEEEEEECTTT-----------CCEEEEECTTSSSEEEEEEECTT
T ss_pred             -EEEEEECCCCceeeeeee-cCCCCceEEEEEcCCC-----------CeEEEEcccccccCCEEEEECCC
Confidence             899999987642111110 0124678899999853           3334444    446788888875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.17  E-value=2.8e-09  Score=108.81  Aligned_cols=200  Identities=13%  Similarity=0.046  Sum_probs=146.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec--
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK--   78 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~-DGtI~IWDl~t~~~~v~~l~--   78 (633)
                      +.|+|++|+  +.++.|+.||. +++.+..+..+....+.++.+.++|+ ++++.+. ++.|..+|..+..  +..+.  
T Consensus        44 ~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~~Gk~--l~~~~~~  117 (276)
T 3no2_A           44 ATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNMKGEV--LSKTEFE  117 (276)
T ss_dssp             ECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECTTSCE--EEEEEEC
T ss_pred             ECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeCCCCE--EEEEecc
Confidence            578999888  45788999998 89999999865445678889999998 6777666 7788888864432  22222  


Q ss_pred             ----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           79 ----QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        79 ----~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                          .+......+++.++++++++...++.|..||.. ++.+..+.....+.++...++|++++++..+++|..+|..++
T Consensus       118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred             CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence                122345567788999999999999999999998 998888876667778888999999999999999999999977


Q ss_pred             CCceEEEeecC----CCCCeeEEEEccCCCeEEEeccCC-------CCeEEEEeeCCCeEEccCCCC
Q 006743          155 PQPLTVLRACS----SSEAVSSLCWQRAKPVFIDETTCK-------AETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       155 ~k~v~~l~~~~----H~~~VtsLafsPdg~~Las~s~~s-------d~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      + .+..+....    .-..+.+++..++|..+++.....       +...++--..++.+ +|....
T Consensus       197 ~-~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~  261 (276)
T 3no2_A          197 R-IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLND  261 (276)
T ss_dssp             C-EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECC
T ss_pred             c-EEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EEEecC
Confidence            4 333333111    123378899999999988874221       12344445557776 676543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.16  E-value=7.3e-10  Score=126.55  Aligned_cols=192  Identities=11%  Similarity=0.006  Sum_probs=127.2

Q ss_pred             CccCCCCEEEEE-----ECCCcEEEEECCCCcee-EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe-------------
Q 006743            1 MYNCKDEHLASI-----SLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-------------   61 (633)
Q Consensus         1 AFSpdG~~LaSg-----s~DG~I~IWDl~tgk~v-~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt-------------   61 (633)
                      +|+|||++||.+     +.+..|++||+.+++.+ .......  ....++|+|+|+ .|+.++.|..             
T Consensus       127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~  203 (695)
T 2bkl_A          127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTT  203 (695)
T ss_dssp             EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCE
T ss_pred             EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecCCC-EEEEEEecCCCCCccccCCCCCE
Confidence            489999999843     33468999999998765 2111111  114689999998 6777777665             


Q ss_pred             EEEEECCCCCce---eEEeccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCceeeEeeCCCCeEEEEEecCC
Q 006743           62 LHLWDTTGRSPK---VSWLKQHSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPSSCITYEAPFSSLAFIDDD  134 (633)
Q Consensus        62 I~IWDl~t~~~~---v~~l~~H~~~VtsLafSPdg~~LaSgS~DG----tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG  134 (633)
                      |++|++.+....   +.....|...+..+.|+|||++|+.++.++    .|++||..+++......+...+....| ++|
T Consensus       204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g  282 (695)
T 2bkl_A          204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKD  282 (695)
T ss_dssp             EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETT
T ss_pred             EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCC
Confidence            999999876521   222234556889999999999998887766    788888777766666666666777777 566


Q ss_pred             CEEEEEE---cCCeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          135 WILTAGT---SNGRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       135 ~~LatGs---~DGsV~IWDlrs~~k-~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .+++...   .++.|++||+.+... ....+........|..++|.             ++.++++...|+..++|.+.
T Consensus       283 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-------------~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-------------GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-------------TTEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-------------CCEEEEEEEECCEEEEEEEe
Confidence            6444443   258899999987632 12233311124456777765             33455556667777777543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.16  E-value=1.7e-09  Score=114.14  Aligned_cols=173  Identities=12%  Similarity=0.079  Sum_probs=115.5

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Q 006743            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--------   69 (633)
Q Consensus         1 AFSpdG~~LaSgs~--DG~I~IWDl~tgk~v~~-~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t--------   69 (633)
                      +|+|||++|+++..  ++.|.+||+.+++.+.. +..  ... ..+.+.|++...+++.+.||.+.+|++..        
T Consensus       114 ~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~  190 (361)
T 2oiz_A          114 RQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS  190 (361)
T ss_dssp             EECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred             EECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence            47899999998864  58999999999988877 542  111 11334454433455555555555555432        


Q ss_pred             ----------------------------------------CCcee-EEecc------C----CCCeEEEEEcCCCCEEEE
Q 006743           70 ----------------------------------------RSPKV-SWLKQ------H----SAPTAGISFSSDDKIIAS   98 (633)
Q Consensus        70 ----------------------------------------~~~~v-~~l~~------H----~~~VtsLafSPdg~~LaS   98 (633)
                                                              ....+ ..+..      +    ......++|+|+++++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv  270 (361)
T 2oiz_A          191 RSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYV  270 (361)
T ss_dssp             ECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEE
T ss_pred             cccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEE
Confidence                                                    11100 00000      0    001112688998888777


Q ss_pred             EeC-----------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC-CceEEEeecCC
Q 006743           99 VGL-----------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP-QPLTVLRACSS  166 (633)
Q Consensus        99 gS~-----------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~-k~v~~l~~~~H  166 (633)
                      +..           .+.|.+||+.+++.+..+.... +.+++|+|||++|++++. +.|.+||..+.. +.+..+  ..+
T Consensus       271 ~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i--~~~  346 (361)
T 2oiz_A          271 FMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI--EGA  346 (361)
T ss_dssp             EEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE--TTS
T ss_pred             EEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe--ccC
Confidence            643           3489999999999998887555 999999999999998887 999999998862 222222  256


Q ss_pred             CCCeeEEEEccCCC
Q 006743          167 SEAVSSLCWQRAKP  180 (633)
Q Consensus       167 ~~~VtsLafsPdg~  180 (633)
                      ......++++|+|.
T Consensus       347 G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          347 AEASLQVQFHPVGG  360 (361)
T ss_dssp             CSSEEEEEECCCSC
T ss_pred             CCCcEEEEecCCCC
Confidence            77889999999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.16  E-value=1.8e-09  Score=114.07  Aligned_cols=189  Identities=7%  Similarity=0.055  Sum_probs=117.6

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEEeCC-----CCCcEEEEEEccCCCeEEEEEe-C-CCeEE
Q 006743            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNSRHLLVTAG-D-DGTLH   63 (633)
Q Consensus         1 AFSpdG~~LaSgs----------~DG~I~IWDl~tgk~v~~~~~~-----~~~~VssLafSpdg~~lLaSGs-~-DGtI~   63 (633)
                      +|+|||++|+++.          .++.|.+||..+++.+..+...     +......++++|+|+ +|+++. . ++.|.
T Consensus        56 ~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~  134 (361)
T 2oiz_A           56 QVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIG  134 (361)
T ss_dssp             EECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEE
T ss_pred             EECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEE
Confidence            5899999999886          3567999999999988887632     122345689999998 555554 3 68999


Q ss_pred             EEECCCCCceeEE-eccCCCCeEEEEEcCCC-CEEEEEeCC---------------------------------------
Q 006743           64 LWDTTGRSPKVSW-LKQHSAPTAGISFSSDD-KIIASVGLD---------------------------------------  102 (633)
Q Consensus        64 IWDl~t~~~~v~~-l~~H~~~VtsLafSPdg-~~LaSgS~D---------------------------------------  102 (633)
                      +||+.+.+. +.. +. +.. ...+.+.|++ ..+++.+.|                                       
T Consensus       135 v~d~~~~~~-~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          135 IVDVAKGDY-VEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEETTTTEE-EEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             EEECCCCcE-EEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence            999988763 333 22 111 1112333322 333333444                                       


Q ss_pred             ---------CeEEEEeCCCCcee--eEee-------C----CCCeEEEEEecCCCEEEEEEc-----------CCeEEEE
Q 006743          103 ---------KKLYTYDPGSRRPS--SCIT-------Y----EAPFSSLAFIDDDWILTAGTS-----------NGRVVFY  149 (633)
Q Consensus       103 ---------GtVrIWDlrtgk~v--~~i~-------h----~~~ItsLafSPdG~~LatGs~-----------DGsV~IW  149 (633)
                               +.|.++|+..+...  ..+.       .    ......++++|+++.++++..           .+.|.+|
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence                     44444444332211  1100       0    011112789999888887654           3489999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      |+.+. +.+..+.  .+.  +.+++|+|+|++|+++            .. +.|.+||+...
T Consensus       292 D~~t~-~~v~~i~--~~~--p~~ia~spdg~~l~v~------------n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          292 DTKTK-QRVARIP--GRD--ALSMTIDQQRNLMLTL------------DG-GNVNVYDISQP  335 (361)
T ss_dssp             ETTTT-EEEEEEE--CTT--CCEEEEETTTTEEEEE------------CS-SCEEEEECSSS
T ss_pred             ECCCC-cEEEEEe--cCC--eeEEEECCCCCEEEEe------------CC-CeEEEEECCCC
Confidence            99987 4455554  344  9999999987665543            33 88889988654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.14  E-value=2.6e-09  Score=105.27  Aligned_cols=189  Identities=12%  Similarity=0.053  Sum_probs=127.3

Q ss_pred             CccCCCCEEE-EEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-
Q 006743            1 MYNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-   78 (633)
Q Consensus         1 AFSpdG~~La-Sgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-   78 (633)
                      +++++|+.++ +...++.|.+||..+... ..+.......+.+|++.+++. ++++.. ++.|.+||..+...  ..+. 
T Consensus        30 ~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~--~~~~~  104 (270)
T 1rwi_B           30 AVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQ--TVLPF  104 (270)
T ss_dssp             EECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCC--EECCC
T ss_pred             EECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceE--eeeec
Confidence            3578888666 446788999999755432 222222234466789999987 555555 89999999877652  2222 


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      .....+.++++.++++++++...++.|.+||..+....... .....+.+++++++|+++++...++.|++||...... 
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-  183 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-  183 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-
Confidence            33367899999999998888778899999987665443322 2334678899999999777777789999999887532 


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                       . .....+...+.+++++++|            .++++...++.|.+||..
T Consensus       184 -~-~~~~~~~~~p~~i~~d~~g------------~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          184 -V-VLPFTDITAPWGIAVDEAG------------TVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             -E-ECCCSSCCSEEEEEECTTC------------CEEEEETTTSCEEEECTT
T ss_pred             -E-eecccCCCCceEEEECCCC------------CEEEEECCCCcEEEEcCC
Confidence             1 1112333668899998854            334444557788888764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.13  E-value=3e-09  Score=110.35  Aligned_cols=181  Identities=8%  Similarity=0.000  Sum_probs=129.1

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-----
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-----   81 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~-----   81 (633)
                      +.+++...++.|.+||..+++.+..+..  ......+++++++. ++++...++.|.+||..+.+. ...+....     
T Consensus        55 ~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~  130 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMES  130 (328)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTT
T ss_pred             EEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeE-EEEEEcCCccccC
Confidence            3444455578999999999999888863  35567899988874 555555899999999988763 33333222     


Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC----------CeEEEE
Q 006743           82 APTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN----------GRVVFY  149 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D----------GsV~IW  149 (633)
                      .....+++  ++..++++.  .++.|.+||+.+++.+..+........++++|+|++++++..+          +.|++|
T Consensus       131 ~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          131 GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence            14567777  345555554  4889999999999988887766677889999999877776655          789999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |..+. +....+.. ........++|+|+++.+...              +..|.+||+.
T Consensus       209 d~~t~-~v~~~~~~-~~g~~p~~la~~~d~~~lyv~--------------~~~v~~~d~~  252 (328)
T 3dsm_A          209 DAETF-TVEKQFKF-KLGDWPSEVQLNGTRDTLYWI--------------NNDIWRMPVE  252 (328)
T ss_dssp             ETTTT-EEEEEEEC-CTTCCCEEEEECTTSCEEEEE--------------SSSEEEEETT
T ss_pred             ECCCC-eEEEEEec-CCCCCceeEEEecCCCEEEEE--------------ccEEEEEECC
Confidence            99876 33333332 123468999999987666554              1267778774

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.11  E-value=6.3e-09  Score=118.93  Aligned_cols=197  Identities=10%  Similarity=0.061  Sum_probs=132.7

Q ss_pred             CccCCCCEEEEEECCCc----------------EEEEECCCCcee--EEEeCC-CCCcEEEEEEccCCCeEEEEEeC---
Q 006743            1 MYNCKDEHLASISLSGD----------------LILHNLASGAKA--AELKDP-NEQVLRVLDYSRNSRHLLVTAGD---   58 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~----------------I~IWDl~tgk~v--~~~~~~-~~~~VssLafSpdg~~lLaSGs~---   58 (633)
                      +|+|||+.|+.+..++.                |++|++.+++..  ..+... +...+..+.|+|+|+.++++...   
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence            48999999999888766                999999887632  233322 23446678999999944444431   


Q ss_pred             -CCeEEEEECCC------CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCce---eeEeeCCC-
Q 006743           59 -DGTLHLWDTTG------RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRP---SSCITYEA-  123 (633)
Q Consensus        59 -DGtI~IWDl~t------~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG----tVrIWDlrtgk~---v~~i~h~~-  123 (633)
                       +..|++||+.+      +......+..+...+.. .|+++++.|+..+.++    .|.+||+.++..   ...+.+.. 
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  335 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK  335 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred             CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence             57899999976      42224556666666655 4888888887766533    699999988642   33444433 


Q ss_pred             -CeEEEEEecCCCEEEEEEcCCe--EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCC
Q 006743          124 -PFSSLAFIDDDWILTAGTSNGR--VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG  200 (633)
Q Consensus       124 -~ItsLafSPdG~~LatGs~DGs--V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~D  200 (633)
                       .+..++|.+++.++++...|+.  |++||+.+++ .+..+.  .+.+.|..+.++|++..++..        .-+....
T Consensus       336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~--~~~~~v~~~~~s~d~~~l~~~--------~ss~~~P  404 (710)
T 2xdw_A          336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA-LLKIFP--LEVGSVVGYSGQKKDTEIFYQ--------FTSFLSP  404 (710)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-EEEEEC--CCSSEEEEEECCTTCSEEEEE--------EECSSCC
T ss_pred             CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-EEEecC--CCCceEEEEecCCCCCEEEEE--------EeCCCCC
Confidence             6888999988888888888885  6667775553 334444  456778889998876554432        0111235


Q ss_pred             CeEEccCCC
Q 006743          201 DSILMPDPL  209 (633)
Q Consensus       201 g~IkIWDlr  209 (633)
                      ..|.+||+.
T Consensus       405 ~~i~~~d~~  413 (710)
T 2xdw_A          405 GIIYHCDLT  413 (710)
T ss_dssp             CEEEEEETT
T ss_pred             CEEEEEECC
Confidence            678888874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.11  E-value=3.4e-09  Score=106.91  Aligned_cols=173  Identities=11%  Similarity=0.049  Sum_probs=118.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeC---CCCCcEEEEEEccCCCeEEEE----Ee-------------CCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD---PNEQVLRVLDYSRNSRHLLVT----AG-------------DDG   60 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~---~~~~~VssLafSpdg~~lLaS----Gs-------------~DG   60 (633)
                      +|+++|+++++...++.|.+||..+++.......   .....+..+++.++|+ ++++    |.             ..+
T Consensus        75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCc
Confidence            4678999877766678999999988875433221   1122345689999997 6665    32             134


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCce---eeEe-eCCCCeEEEEEecCCC
Q 006743           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-SRRP---SSCI-TYEAPFSSLAFIDDDW  135 (633)
Q Consensus        61 tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr-tgk~---v~~i-~h~~~ItsLafSPdG~  135 (633)
                      .|..|+.. +.  ...+..+......++|+|+++.+++.+.++.|++||+. +++.   ...+ .....+.+++++++|+
T Consensus       154 ~l~~~~~~-g~--~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          154 WVFRLAPD-GT--LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             EEEEECTT-SC--EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             EEEEECCC-CC--EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            56666655 33  34455666778999999999998777788999999997 4554   2222 2345677899999998


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEE-ccCCCeEEE
Q 006743          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW-QRAKPVFID  184 (633)
Q Consensus       136 ~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLaf-sPdg~~Las  184 (633)
                      ++++.  ++.|++||...  +.+..+.  .+.. +.+++| .|+++.|+.
T Consensus       231 l~v~~--~~~v~~~~~~g--~~~~~~~--~~~~-~~~~~f~~~d~~~L~v  273 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPDG--DELGRVL--TPQT-TSNLCFGGPEGRTLYM  273 (296)
T ss_dssp             EEEEE--TTEEEEECTTS--CEEEEEE--CSSC-CCEEEEESTTSCEEEE
T ss_pred             EEEEc--CCeEEEECCCC--CEEEEEE--CCCC-ceeEEEECCCCCEEEE
Confidence            66665  88999999873  3344444  3445 899999 465544433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.11  E-value=2.7e-08  Score=98.63  Aligned_cols=187  Identities=9%  Similarity=-0.016  Sum_probs=130.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      ++++|+.+++...++.|..||.. ++. ..+.. .....+..+++.+++. ++++...++.|.+||. ++.........+
T Consensus        64 ~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  139 (299)
T 2z2n_A           64 ISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNK  139 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             ECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCC
Confidence            56788877776668889999975 433 33332 1345678899999886 6776667889999998 444222223345


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ...+.++++.++++++++...++.|.+||. +++.... . .....+.+++++++|++.++...++.|.+||. +..  +
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~  215 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--I  215 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--E
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--E
Confidence            567899999999988887777889999999 6665543 2 23456889999999987777667889999999 442  2


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ..+....+...+.+++++++|+..+            +...++.|.+||.
T Consensus       216 ~~~~~~~~~~~~~~i~~~~~g~l~v------------~~~~~~~i~~~d~  253 (299)
T 2z2n_A          216 TEFKIPTPNARPHAITAGAGIDLWF------------TEWGANKIGRLTS  253 (299)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEE------------EETTTTEEEEEET
T ss_pred             EEEECCCCCCCceeEEECCCCCEEE------------eccCCceEEEECC
Confidence            3333334556788999988655333            3334566777765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.10  E-value=3.4e-08  Score=97.93  Aligned_cols=188  Identities=10%  Similarity=0.019  Sum_probs=129.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      ++++|+.+++...++.|.+||.. ++............+..+++.+++. ++++...++.|..||... ......+....
T Consensus        22 ~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~   98 (299)
T 2z2n_A           22 VSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKKG-IIKEYTLPNPD   98 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTS-CEEEEECSSTT
T ss_pred             ECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCCC-cEEEEeCCCcC
Confidence            56788877766567899999987 5443322122345678899999987 666666688999999863 32122222345


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ..+.++++.++++++++...++.|.+||. +++.....  .....+.+++++++|+++++...++.|.+||. ++.  +.
T Consensus        99 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~~  174 (299)
T 2z2n_A           99 SAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD--IT  174 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC--EE
T ss_pred             CCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc--EE
Confidence            67999999999988888878889999999 55544332  24467899999999988777777889999998 442  22


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .+....+...+.++++++++..            +++...++.|.+||.
T Consensus       175 ~~~~~~~~~~~~~i~~~~~g~l------------~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          175 EFKIPTPASGPVGITKGNDDAL------------WFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSSE------------EEEETTTTEEEEECT
T ss_pred             EeeCCCCCCcceeEEECCCCCE------------EEEccCCceEEEECC
Confidence            2322234556888998886543            333344667777776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.09  E-value=1.4e-08  Score=114.59  Aligned_cols=187  Identities=13%  Similarity=0.135  Sum_probs=134.7

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC--CCCceeEEeccCCCC
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--GRSPKVSWLKQHSAP   83 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~--t~~~~v~~l~~H~~~   83 (633)
                      +..+++...++.|.++|..+++.+..+..  ...+..+.|+|+++ ++++++.|+.|.+||+.  +.+. +..+... ..
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~-v~~i~~G-~~  241 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTT-VAEIKIG-SE  241 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCE-EEEEECC-SE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcE-eEEEecC-CC
Confidence            34556667789999999999999988874  34566899999998 67788899999999995  5543 4445443 34


Q ss_pred             eEEEEEc----CCCCEEEEEeC-CCeEEEEeCCCCceeeEeeC------------CCCeEEEEEecCCCEEE-EEEcCCe
Q 006743           84 TAGISFS----SDDKIIASVGL-DKKLYTYDPGSRRPSSCITY------------EAPFSSLAFIDDDWILT-AGTSNGR  145 (633)
Q Consensus        84 VtsLafS----Pdg~~LaSgS~-DGtVrIWDlrtgk~v~~i~h------------~~~ItsLafSPdG~~La-tGs~DGs  145 (633)
                      ...++|+    |||+++++++. ++.|.++|..+.+.+..+..            ...+..+..++++..++ ....+|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6899999    69998887765 48999999999988877642            12577888888765544 4556799


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      |.++|....... .+.. ........++.|+|++++++.+.           ..++.|.++|+..
T Consensus       322 v~~vd~~~~~~~-~v~~-i~~~~~~~d~~~~pdgr~~~va~-----------~~sn~V~ViD~~t  373 (567)
T 1qks_A          322 ILLVDYTDLNNL-KTTE-ISAERFLHDGGLDGSHRYFITAA-----------NARNKLVVIDTKE  373 (567)
T ss_dssp             EEEEETTCSSEE-EEEE-EECCSSEEEEEECTTSCEEEEEE-----------GGGTEEEEEETTT
T ss_pred             EEEEecCCCccc-eeee-eeccccccCceECCCCCEEEEEe-----------CCCCeEEEEECCC
Confidence            999999875321 2111 23445677889999877765442           2355566666553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.07  E-value=5.8e-09  Score=106.66  Aligned_cols=158  Identities=12%  Similarity=0.131  Sum_probs=109.1

Q ss_pred             CccCCCCEEEEEECC---------------------------CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEE
Q 006743            1 MYNCKDEHLASISLS---------------------------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLL   53 (633)
Q Consensus         1 AFSpdG~~LaSgs~D---------------------------G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lL   53 (633)
                      +|+|||++|+.++.+                           ..|++||+.+++.+..+.. .  .+..++|+|++  ++
T Consensus       110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg--~~  184 (347)
T 2gop_A          110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK--IV  184 (347)
T ss_dssp             EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE--EE
T ss_pred             eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe--EE
Confidence            489999999887642                           5799999988876455543 2  55678999998  66


Q ss_pred             EEEeCCC-------eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCceeeE
Q 006743           54 VTAGDDG-------TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSC  118 (633)
Q Consensus        54 aSGs~DG-------tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D--------GtVrIWDlrtgk~v~~  118 (633)
                      +++..++       ...||.+.+++  ...+..+ ..+..+  +|+|++|+.++.+        ..|++||  +++....
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~d~~~--~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l  257 (347)
T 2gop_A          185 VNVPHREIIPQYFKFWDIYIWEDGK--EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI  257 (347)
T ss_dssp             EEEECCCSSCCSSCCEEEEEEETTE--EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred             EEEecccccccccccccEEEeCCCc--eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence            6665542       33444444333  3444444 555544  8999998887754        3788888  5555444


Q ss_pred             ee-CCCCeEE-EEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          119 IT-YEAPFSS-LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       119 i~-h~~~Its-LafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      .. +...+.. +.|+ |+ +++++..++.++|| +.++ +... +.  .+.+.|.+++|+|
T Consensus       258 ~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~~~-~~--~~~~~v~~~~~s~  311 (347)
T 2gop_A          258 LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EIKP-IA--KGRHWIMGFDVDE  311 (347)
T ss_dssp             STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS-SEEE-EE--CSSSEEEEEEESS
T ss_pred             cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ceEE-Ee--cCCCeEEeeeeeC
Confidence            43 4567776 9999 88 88899999999999 8743 3322 22  4577899999987

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.04  E-value=6.4e-09  Score=119.73  Aligned_cols=188  Identities=13%  Similarity=-0.005  Sum_probs=122.4

Q ss_pred             CccCCCCEEEEEECC-----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--------------e
Q 006743            1 MYNCKDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--------------T   61 (633)
Q Consensus         1 AFSpdG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--------------t   61 (633)
                      +|+|||++||.+..+     ..|++||+.+++.+....  ....+..++|+|+ + .|+.+..|+              .
T Consensus       169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-S-EEEEEECCCC--------CCCCCE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCE
Confidence            489999999877643     359999999998765422  1111245789999 7 455555544              3


Q ss_pred             EEEEECCCCCce-eEEec--cCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC--c-eeeEeeCCCCeEEEEE
Q 006743           62 LHLWDTTGRSPK-VSWLK--QHSAPTAGISFSSDDKIIASVGLDK-----KLYTYDPGSR--R-PSSCITYEAPFSSLAF  130 (633)
Q Consensus        62 I~IWDl~t~~~~-v~~l~--~H~~~VtsLafSPdg~~LaSgS~DG-----tVrIWDlrtg--k-~v~~i~h~~~ItsLaf  130 (633)
                      |++|++.+.... .....  .+...+..+.|+|||++|+..+.++     .|++||+.++  + ......+...+.... 
T Consensus       245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-  323 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-  323 (741)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-
T ss_pred             EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-
Confidence            999999766521 12222  2334689999999999988877554     8999999887  4 444444555555553 


Q ss_pred             ecCCCEEEEEEc----CCeEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEc
Q 006743          131 IDDDWILTAGTS----NGRVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (633)
Q Consensus       131 SPdG~~LatGs~----DGsV~IWDlrs~~-k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkI  205 (633)
                      .|+|+.|+..+.    ++.|++||+.+.. ....++.  .+...+..++|.             ++.++++...|+..+|
T Consensus       324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~l~~~~~~-------------~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          324 DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP--ESKDNLESVGIA-------------GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC--CCSSEEEEEEEE-------------BTEEEEEEEETTEEEE
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec--CCCCeEEEEEEE-------------CCEEEEEEEECCEEEE
Confidence            488998888775    3569999988742 2222332  344556566654             2345555566777666


Q ss_pred             cCC
Q 006743          206 PDP  208 (633)
Q Consensus       206 WDl  208 (633)
                      |.+
T Consensus       389 ~~~  391 (741)
T 1yr2_A          389 LAF  391 (741)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.02  E-value=1.9e-08  Score=101.08  Aligned_cols=191  Identities=13%  Similarity=0.143  Sum_probs=126.2

Q ss_pred             CccCCCCEEEE-------EECCCcEEEEECCCCceeEEEe---CCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCC
Q 006743            1 MYNCKDEHLAS-------ISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTG   69 (633)
Q Consensus         1 AFSpdG~~LaS-------gs~DG~I~IWDl~tgk~v~~~~---~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t   69 (633)
                      +|+++|+.+++       +..++.|.+||..+++......   ..+...+..+++.++ ++ ++ .+..++.|.+||.. 
T Consensus        24 ~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~-v~~~~~~l~~~d~~-  100 (314)
T 1pjx_A           24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LF-VADMRLGLLVVQTD-  100 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EE-EEETTTEEEEEETT-
T ss_pred             eECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EE-EEECCCCEEEEeCC-
Confidence            47788887777       5678899999988777543221   012345778999998 64 44 44445579999988 


Q ss_pred             CCceeEEe-cc-----CCCCeEEEEEcCCCCEEEEEeCC---------------CeEEEEeCCCCceeeEeeCCCCeEEE
Q 006743           70 RSPKVSWL-KQ-----HSAPTAGISFSSDDKIIASVGLD---------------KKLYTYDPGSRRPSSCITYEAPFSSL  128 (633)
Q Consensus        70 ~~~~v~~l-~~-----H~~~VtsLafSPdg~~LaSgS~D---------------GtVrIWDlrtgk~v~~i~h~~~ItsL  128 (633)
                      ++  ...+ ..     ....++++++.++++++++...+               +.|..||.. ++.............+
T Consensus       101 g~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i  177 (314)
T 1pjx_A          101 GT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGI  177 (314)
T ss_dssp             SC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEE
T ss_pred             CC--EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceE
Confidence            54  2333 21     12458899999999888877665               578888876 6555444445567899


Q ss_pred             EEe----cCCCEEEEE-EcCCeEEEEECCCCCCc--eEEEee-cCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEeeC
Q 006743          129 AFI----DDDWILTAG-TSNGRVVFYDIRGKPQP--LTVLRA-CSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAV  199 (633)
Q Consensus       129 afS----PdG~~LatG-s~DGsV~IWDlrs~~k~--v~~l~~-~~H~-~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~  199 (633)
                      +|+    ++++.|+++ ..++.|++||+......  ...+.. ..+. ..+..++++++|+            ++++...
T Consensus       178 ~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~------------l~v~~~~  245 (314)
T 1pjx_A          178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN------------LLVANWG  245 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC------------EEEEEET
T ss_pred             EEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC------------EEEEEcC
Confidence            999    999766655 46789999998621111  112221 1333 5678888888554            3444445


Q ss_pred             CCeEEccCCC
Q 006743          200 GDSILMPDPL  209 (633)
Q Consensus       200 Dg~IkIWDlr  209 (633)
                      ++.|.+||..
T Consensus       246 ~~~i~~~d~~  255 (314)
T 1pjx_A          246 SSHIEVFGPD  255 (314)
T ss_dssp             TTEEEEECTT
T ss_pred             CCEEEEEcCC
Confidence            7788889874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.00  E-value=1e-07  Score=107.56  Aligned_cols=194  Identities=14%  Similarity=0.090  Sum_probs=136.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC--CCceeEEEeCCCCCcEEEEEEc----cCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743            1 MYNCKDEHLASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYS----RNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~--tgk~v~~~~~~~~~~VssLafS----pdg~~lLaSGs~DGtI~IWDl~t~~~~v   74 (633)
                      +|+|||+++++++.|+.|.+||+.  +++.+..+..  ......++|+    |+|+.++++...+++|.|+|..+.+.. 
T Consensus       203 ~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~-  279 (567)
T 1qks_A          203 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK-  279 (567)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE-
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE-
Confidence            489999999999999999999996  8888888874  3345679999    699966666677899999999887743 


Q ss_pred             EEecc----------C-CCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcee--eEeeCCCCeEEEEEecCCCEEEEE
Q 006743           75 SWLKQ----------H-SAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPS--SCITYEAPFSSLAFIDDDWILTAG  140 (633)
Q Consensus        75 ~~l~~----------H-~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v--~~i~h~~~ItsLafSPdG~~LatG  140 (633)
                      ..+..          | ...+..+..++++. +++....+|.|.++|..+.+..  ..+.......++.|+|+|++++++
T Consensus       280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va  359 (567)
T 1qks_A          280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA  359 (567)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence            33221          2 12678888888655 4555667799999999876433  333456678889999999998776


Q ss_pred             E-cCCeEEEEECCCCCCceEEEee---cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee-CCCeEEccCCCC
Q 006743          141 T-SNGRVVFYDIRGKPQPLTVLRA---CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLP  210 (633)
Q Consensus       141 s-~DGsV~IWDlrs~~k~v~~l~~---~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs-~Dg~IkIWDlr~  210 (633)
                      . .++.|.+||+.+. +.+..+..   ..|.+....+ ++|+           .+.++++.. .++.|.++|..+
T Consensus       360 ~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~-----------~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          360 ANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPT-----------FGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETT-----------TEEEEEEEBSSSSEEEEEECCT
T ss_pred             eCCCCeEEEEECCCC-cEEEEEeccCcCCCCccceee-ECCC-----------CCcEEEeCCCCCCeEEEecCCC
Confidence            6 5789999999987 34444432   1233222222 4564           233444443 468899998765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.99  E-value=1.8e-07  Score=92.76  Aligned_cols=187  Identities=7%  Similarity=-0.054  Sum_probs=128.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +.++|+.+++...++.|..||.. ++.. .+.. .....+..+++.+++. ++++...++.|..||.. ++.....+...
T Consensus        69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~  144 (300)
T 2qc5_A           69 VSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNK  144 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred             ECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCC
Confidence            45778777666567889999987 5543 3332 1335678899999887 66666668899999987 44222223334


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ...+.++++.++++++++...++.|.+||. +++.....  .....+.+++++++|.+.++....+.|.+||.. +.  +
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~  220 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE--I  220 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC--E
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc--E
Confidence            567899999999997777766889999998 55554332  234568999999999877777677889999983 32  2


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ..+....+...+.+++++++|+.            +++...++.|.+||.
T Consensus       221 ~~~~~~~~~~~~~~i~~d~~g~l------------~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          221 SEYDIPTPNARPHAITAGKNSEI------------WFTEWGANQIGRITN  258 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCE------------EEEETTTTEEEEECT
T ss_pred             EEEECCCCCCCceEEEECCCCCE------------EEeccCCCeEEEECC
Confidence            22322234567889999886543            333334567777765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.98  E-value=2e-07  Score=92.31  Aligned_cols=188  Identities=8%  Similarity=-0.045  Sum_probs=128.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      +.++|+.+++...++.|.+||.. ++............+..+++.+++. ++++...++.|.+||.. ++.....+....
T Consensus        27 ~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~  103 (300)
T 2qc5_A           27 SSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGFTEYPLPQPD  103 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTT
T ss_pred             ECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCeEEecCCCCC
Confidence            46778877766678999999987 5543321122235678899999887 66666667899999988 442222233344


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-ee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-IT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ..+.++++.++++++++...++.|..||.. ++.... .. ....+.+++++++|++.++...++.|..||. .+.  +.
T Consensus       104 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~  179 (300)
T 2qc5_A          104 SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK--LE  179 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EE
T ss_pred             CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc--EE
Confidence            679999999999988887778899999988 655432 22 3467899999999996666666789999998 332  22


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .+....+...+.++++++++...+            +....+.|.+||.
T Consensus       180 ~~~~~~~~~~~~~i~~d~~g~l~v------------~~~~~~~i~~~~~  216 (300)
T 2qc5_A          180 EYPLPTNAAAPVGITSGNDGALWF------------VEIMGNKIGRITT  216 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEE------------EETTTTEEEEECT
T ss_pred             EeeCCCCCCCcceEEECCCCCEEE------------EccCCCEEEEEcC
Confidence            233223456688899888654433            3333556677765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.97  E-value=6e-08  Score=97.41  Aligned_cols=188  Identities=15%  Similarity=0.178  Sum_probs=123.3

Q ss_pred             ccCC-CCEEEEEECCCcEEEEECCCCceeEE-EeC---CCCCcEEEEEEccCCCeEEEEEeCC---------------Ce
Q 006743            2 YNCK-DEHLASISLSGDLILHNLASGAKAAE-LKD---PNEQVLRVLDYSRNSRHLLVTAGDD---------------GT   61 (633)
Q Consensus         2 FSpd-G~~LaSgs~DG~I~IWDl~tgk~v~~-~~~---~~~~~VssLafSpdg~~lLaSGs~D---------------Gt   61 (633)
                      ++++ |+ |..++.++.|.+||.. ++.... ...   .....+.++++.++++ ++++...+               +.
T Consensus        78 ~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A           78 CDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             ECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             EecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCe
Confidence            5677 54 4445555589999987 654332 221   1123467899999987 56655544               56


Q ss_pred             EEEEECCCCCceeEEeccCCCCeEEEEEc----CCCCEEEEE-eCCCeEEEEeCC-CCcee-----eEee-CC-CCeEEE
Q 006743           62 LHLWDTTGRSPKVSWLKQHSAPTAGISFS----SDDKIIASV-GLDKKLYTYDPG-SRRPS-----SCIT-YE-APFSSL  128 (633)
Q Consensus        62 I~IWDl~t~~~~v~~l~~H~~~VtsLafS----Pdg~~LaSg-S~DGtVrIWDlr-tgk~v-----~~i~-h~-~~ItsL  128 (633)
                      |..||.. ++  ...+..+......++|+    ++++.++.+ ..++.|++||+. +++..     ..+. +. ..+..+
T Consensus       155 l~~~~~~-g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          155 IYCFTTD-GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEECTT-SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             EEEECCC-CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            7777765 33  23333344567899999    998765555 567899999986 44321     1111 22 568899


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       129 afSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +++++|+++++...++.|.+||.+++. .+..+.  .+...+.+++|+++++.|           +++...++.|..||+
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~-~~~~~~--~~~~~~~~i~~~~dg~~l-----------~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIR--CPFEKPSNLHFKPQTKTI-----------FVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEE--CSSSCEEEEEECTTSSEE-----------EEEETTTTEEEEEEC
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCCCc-EeEEEe--CCCCCceeEEECCCCCEE-----------EEEeCCCCeEEEEeC
Confidence            999999988888888999999998543 334444  345789999998865533           333444567888876


Q ss_pred             C
Q 006743          209 L  209 (633)
Q Consensus       209 r  209 (633)
                      .
T Consensus       298 ~  298 (314)
T 1pjx_A          298 Q  298 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.97  E-value=1.1e-08  Score=116.92  Aligned_cols=195  Identities=11%  Similarity=0.057  Sum_probs=125.8

Q ss_pred             CccCCCCEEEEEECCCc-------------EEEEECCCCce--eEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCC----
Q 006743            1 MYNCKDEHLASISLSGD-------------LILHNLASGAK--AAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDG----   60 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~-------------I~IWDl~tgk~--v~~~~~~-~~~~VssLafSpdg~~lLaSGs~DG----   60 (633)
                      +|+|||+.|+.++.|..             |++|++.++..  ...+... +...+..+.|+|+|+. |+.++.++    
T Consensus       174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~  252 (695)
T 2bkl_A          174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY-LFVYILRGWSEN  252 (695)
T ss_dssp             EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC-EEEEEEETTTEE
T ss_pred             EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE-EEEEEeCCCCce
Confidence            48999999999988776             99999988762  2233321 3345677999999984 55444444    


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCce---eeEeeC--CCCeEEEEEec
Q 006743           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRP---SSCITY--EAPFSSLAFID  132 (633)
Q Consensus        61 tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS---~DGtVrIWDlrtgk~---v~~i~h--~~~ItsLafSP  132 (633)
                      .|++||..+..  ...+..+...+....| +++.+++...   .++.|++||+.++..   ...+.+  ...+..++|+ 
T Consensus       253 ~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-  328 (695)
T 2bkl_A          253 DVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-  328 (695)
T ss_dssp             EEEEECTTCSS--CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred             EEEEEcCCCCc--eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence            66777665544  3455566666777777 5565444443   257899999987753   344443  4457888888 


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       133 dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ++.++++...|+..+||.+.-.......+. ..+.+.|..++++|++..++..        .-+....+.|++||+.
T Consensus       329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~--------~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQ-LPGVGAASNLMGLEDLDDAYYV--------FTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTCCEEEECC-CSSSSEECCCBSCTTCSEEEEE--------EEETTEEEEEEEEETT
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCeeEEec-CCCCeEEEEeecCCCCCEEEEE--------EcCCCCCCEEEEEECC
Confidence            677888889999888876542222223332 1225667778888876554432        1122235678888874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.86  E-value=1.7e-07  Score=101.07  Aligned_cols=188  Identities=7%  Similarity=0.009  Sum_probs=125.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEe-
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWL-   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~l-   77 (633)
                      +|+++|+++++...++.|++||..++........  ..... ++|+++++ .|+.+..++  .|++||..+... ...+ 
T Consensus       137 a~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~-~~~~g  211 (409)
T 3hrp_A          137 AAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWA-PTRIG  211 (409)
T ss_dssp             EECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTC-EEEEE
T ss_pred             EEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCce-eEEee
Confidence            4678888777666778999999987766555543  22333 89999998 677777655  899999876553 2222 


Q ss_pred             ---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE----e-eCCCCe-E-EEEEecC-CCEEEEEEcCCeE
Q 006743           78 ---KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC----I-TYEAPF-S-SLAFIDD-DWILTAGTSNGRV  146 (633)
Q Consensus        78 ---~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~----i-~h~~~I-t-sLafSPd-G~~LatGs~DGsV  146 (633)
                         ......+.+++++|++..|+.+..++.|+.||..++.....    . .....- . .++|+|+ +.++++-..++.|
T Consensus       212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I  291 (409)
T 3hrp_A          212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV  291 (409)
T ss_dssp             ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred             eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence               22456788999999555566677889999999987764333    1 111222 3 9999995 5555566678899


Q ss_pred             EEEECCCCCCceEEEeecC-------------CCCCeeEEEEccCCCeEEEeccCCCCeEEEEee-CCCeEEccCC
Q 006743          147 VFYDIRGKPQPLTVLRACS-------------SSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDP  208 (633)
Q Consensus       147 ~IWDlrs~~k~v~~l~~~~-------------H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs-~Dg~IkIWDl  208 (633)
                      +.||....   +..+....             .-.....++|+++|++            +++.. .++.|+.||+
T Consensus       292 ~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l------------yvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          292 YKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF------------YIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             EEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE------------EEEETTTTCEEEEEET
T ss_pred             EEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE------------EEEeCCCCCEEEEEEC
Confidence            99998754   22222111             0134788999886553            34444 5677888875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.86  E-value=5.4e-07  Score=93.21  Aligned_cols=186  Identities=13%  Similarity=0.038  Sum_probs=118.6

Q ss_pred             CccCCCCE-EEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEH-LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~-LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+++++. +++...++.|.+||..+++.. .+.  ....+.+++|.++++ ++++ ..+ .|++||..+++.  ..+..
T Consensus        55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~-l~v~-~~~-gl~~~d~~~g~~--~~~~~  126 (326)
T 2ghs_A           55 TFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSK-QLIA-SDD-GLFLRDTATGVL--TLHAE  126 (326)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTE-EEEE-ETT-EEEEEETTTCCE--EEEEC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCe-EEEE-ECC-CEEEEECCCCcE--EEEee
Confidence            47887654 455556789999998776543 343  235688899999987 4444 444 499999987763  22222


Q ss_pred             C-----CCCeEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE-cCCeEE
Q 006743           80 H-----SAPTAGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVV  147 (633)
Q Consensus        80 H-----~~~VtsLafSPdg~~LaSgS~------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs-~DGsV~  147 (633)
                      .     ...+++++++|+|+++++...      .+.|..+|  +++.............++|+|+++.|+.+. .++.|+
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence            1     235889999999987765542      25677777  555444434445678999999998776554 568999


Q ss_pred             EEECC--CC-CC-ceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          148 FYDIR--GK-PQ-PLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       148 IWDlr--s~-~k-~v~~l~~~-~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +||+.  ++ .. ....+... .....+.+++++++|.+.+            +...++.|.+||.
T Consensus       205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv------------a~~~~~~v~~~d~  258 (326)
T 2ghs_A          205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN------------ARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE------------EEETTTEEEEECT
T ss_pred             EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE------------EEeCCCEEEEECC
Confidence            99986  33 11 11222211 2345567788877654433            3334566777765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.84  E-value=1.3e-07  Score=96.41  Aligned_cols=173  Identities=12%  Similarity=0.060  Sum_probs=115.3

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+++|+ ++++...++.|..|+. +++. ..+.. ....+..+++.++|+ ++++...++.|.+||.. +.  ...+..
T Consensus        51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~-~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~--~~~~~~  123 (305)
T 3dr2_A           51 AWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLD-ATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQ--AHLLVG  123 (305)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEE-SCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC--EEEEEC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeC-CCCccceeeECCCCC-EEEEECCCCEEEEECCC-CC--EEEEEe
Confidence            4789998 4556667889999997 5543 33432 345678899999997 55555556889999986 33  222221


Q ss_pred             C-----CCCeEEEEEcCCCCEEEE----EeC-------------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEE
Q 006743           80 H-----SAPTAGISFSSDDKIIAS----VGL-------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWIL  137 (633)
Q Consensus        80 H-----~~~VtsLafSPdg~~LaS----gS~-------------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~L  137 (633)
                      +     ...++++++.++|+++++    |..             .+.|+.||..+++..... .......++|+||++.|
T Consensus       124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~l  202 (305)
T 3dr2_A          124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTL  202 (305)
T ss_dssp             EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEE
T ss_pred             ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEE
Confidence            1     235678999999998886    332             357888998777765544 44567889999999988


Q ss_pred             EEEEcC------CeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeE
Q 006743          138 TAGTSN------GRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       138 atGs~D------GsV~IWDlrs~~k-~v~~l~~~~H~~~VtsLafsPdg~~L  182 (633)
                      +++...      +.|++||+..... ....+.. ...+...+++++++|++.
T Consensus       203 yv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lw  253 (305)
T 3dr2_A          203 YVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLW  253 (305)
T ss_dssp             EEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEE
T ss_pred             EEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEE
Confidence            887765      7899999875420 0011111 123445667777766533

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.83  E-value=6.6e-07  Score=90.92  Aligned_cols=188  Identities=9%  Similarity=0.060  Sum_probs=119.4

Q ss_pred             CccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+++++.| ++...++.|+.||..+++. ..+.  ....+.++++.++++ ++++ . ++.|.+||..+++.  ..+..
T Consensus        19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~--~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~~--~~~~~   90 (297)
T 3g4e_A           19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT--MDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQSA--VVLAT   90 (297)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE--CSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTEE--EEEEE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe--CCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCcE--EEEEe
Confidence            378865544 4555678999999987765 3343  345688899999998 4444 3 57899999987653  22221


Q ss_pred             -----CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEE-EEc
Q 006743           80 -----HSAPTAGISFSSDDKIIASVGL-----------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA-GTS  142 (633)
Q Consensus        80 -----H~~~VtsLafSPdg~~LaSgS~-----------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~Lat-Gs~  142 (633)
                           ....+++++++|+|+++++...           .+.|+.+|.. ++.............++|+||++.|+. ...
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence                 1235789999999997665432           2345555553 444444444456789999999987755 455


Q ss_pred             CCeEEEEECC--CCCCc-eEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          143 NGRVVFYDIR--GKPQP-LTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       143 DGsV~IWDlr--s~~k~-v~~l~~~-~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ++.|.+||+.  ++... .+.+... .+.+.+..++++++|++.            ++...++.|.+||..
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw------------va~~~~~~v~~~d~~  228 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW------------VACYNGGRVIRLDPV  228 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE------------EEEETTTEEEEECTT
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE------------EEEcCCCEEEEEcCC
Confidence            7899999974  33210 1122211 234567888888865443            333446677777764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.82  E-value=5.7e-07  Score=91.43  Aligned_cols=176  Identities=13%  Similarity=0.085  Sum_probs=115.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC---CCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP---NEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTT   68 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~---~~~~VssLafSpdg~~lLaSGs~---------DGtI~IWDl~   68 (633)
                      +|+++|++++ +. ++.|.+||..+++........   ....+..+++.++|+ ++++...         .....||.+.
T Consensus        60 ~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d  136 (297)
T 3g4e_A           60 ALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLF  136 (297)
T ss_dssp             EEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred             EECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEE
Confidence            4678898554 44 568999999877654333221   224578899999998 5554322         1234555554


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeC--CCCcee--eEe----eCCCCeEEEEEecCCCEEEE
Q 006743           69 GRSPKVSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDP--GSRRPS--SCI----TYEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        69 t~~~~v~~l~~H~~~VtsLafSPdg~~La-SgS~DGtVrIWDl--rtgk~v--~~i----~h~~~ItsLafSPdG~~Lat  139 (633)
                      .... ...+..+....+.++|+|+++.|+ +.+.++.|.+||+  .++...  ..+    .....+..++++++|++.++
T Consensus       137 ~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva  215 (297)
T 3g4e_A          137 PDHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA  215 (297)
T ss_dssp             TTSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred             CCCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence            3222 223334445678999999998765 4556789999987  455432  112    13356889999999988888


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEc-cCCCeEE
Q 006743          140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ-RAKPVFI  183 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafs-Pdg~~La  183 (633)
                      ...++.|.+||..++ +.+..+.  .+...+++++|. |+++.|.
T Consensus       216 ~~~~~~v~~~d~~tG-~~~~~i~--~p~~~~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          216 CYNGGRVIRLDPVTG-KRLQTVK--LPVDKTTSCCFGGKNYSEMY  257 (297)
T ss_dssp             EETTTEEEEECTTTC-CEEEEEE--CSSSBEEEEEEESGGGCEEE
T ss_pred             EcCCCEEEEEcCCCc-eEEEEEE--CCCCCceEEEEeCCCCCEEE
Confidence            878889999999876 3444454  345679999998 7655443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.78  E-value=5.9e-07  Score=96.71  Aligned_cols=191  Identities=10%  Similarity=0.068  Sum_probs=123.8

Q ss_pred             CccCCCCEEEEEECCC--cEEEEECCCCceeEEE---eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            1 MYNCKDEHLASISLSG--DLILHNLASGAKAAEL---KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG--~I~IWDl~tgk~v~~~---~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      +|+++++.|+++..++  .|.+|+...+.....+   .......+.+++++|++.. |+.+..++.|+.||..+......
T Consensus       177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEE
T ss_pred             eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEE
Confidence            4788999999888766  7999998766543333   1113345667899995553 44477789999999987662211


Q ss_pred             E---eccCCCCe-E-EEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---------------CCeEEEEEecCC
Q 006743           76 W---LKQHSAPT-A-GISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYE---------------APFSSLAFIDDD  134 (633)
Q Consensus        76 ~---l~~H~~~V-t-sLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---------------~~ItsLafSPdG  134 (633)
                      .   ..++...- . .++|+| ++.++++-..++.|+.||.... ......+.               .....++++++|
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence            0   12222222 3 999999 4666666667889999997643 33333322               348899999999


Q ss_pred             CEEEEEE-cCCeEEEEECCCCCCceEEEeec-C------------CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCC
Q 006743          135 WILTAGT-SNGRVVFYDIRGKPQPLTVLRAC-S------------SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG  200 (633)
Q Consensus       135 ~~LatGs-~DGsV~IWDlrs~~k~v~~l~~~-~------------H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~D  200 (633)
                      +++++-. .++.|+.||+.++.  +..+... .            .-.....+++++++            .++++....
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g------------~lyVad~~n  400 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG------------GYWIAEAWG  400 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS------------EEEEEESTT
T ss_pred             CEEEEeCCCCCEEEEEECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC------------CEEEEECCC
Confidence            9777777 78999999976652  2222211 0            02457888888854            444444556


Q ss_pred             CeEEccC
Q 006743          201 DSILMPD  207 (633)
Q Consensus       201 g~IkIWD  207 (633)
                      +.|+.++
T Consensus       401 ~~Ir~i~  407 (409)
T 3hrp_A          401 KAIRKYA  407 (409)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            6666553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.77  E-value=4.6e-08  Score=105.56  Aligned_cols=124  Identities=12%  Similarity=0.058  Sum_probs=97.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      |+++|+++ .++.|++||+.+......... +...+..+.+.+.   .++++..||.|.+||+..... ..    +...|
T Consensus        96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~-~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~-~~----~~~~V  165 (388)
T 1xip_A           96 HGDQVLVS-TRNALYSLDLEELSEFRTVTS-FEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST-KQ----LAQNV  165 (388)
T ss_dssp             ETTEEEEE-ESSEEEEEESSSTTCEEEEEE-CSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-EE----EEESE
T ss_pred             CCCEEEEE-cCCcEEEEEchhhhccCccce-eecceeeEEecCC---CEEEEECCCCEEEEEccCCcc-cc----ccCCc
Confidence            78899998 889999999987665444443 3445677777654   288889999999999987763 22    44689


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeEe----------eCCCCeEEEEEecCCCEEEEE
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRP--SSCI----------TYEAPFSSLAFIDDDWILTAG  140 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~--v~~i----------~h~~~ItsLafSPdG~~LatG  140 (633)
                      .|++|+|+|  ++.|..||++++|+...+..  ...+          .|...|.+++|.+++.++++-
T Consensus       166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            999999999  78899999999999987775  4445          257789999999999888763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.75  E-value=4e-07  Score=104.80  Aligned_cols=196  Identities=13%  Similarity=0.106  Sum_probs=124.5

Q ss_pred             CccCCCCEEEEEECCCc--------------EEEEECCCCce--eEEEeCC-CCCcEEEEEEccCCCeEEEEEeCC----
Q 006743            1 MYNCKDEHLASISLSGD--------------LILHNLASGAK--AAELKDP-NEQVLRVLDYSRNSRHLLVTAGDD----   59 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~--------------I~IWDl~tgk~--v~~~~~~-~~~~VssLafSpdg~~lLaSGs~D----   59 (633)
                      +|+|| +.|+.+..++.              |++|++.++..  ...+... +...+..+.|+|+|+ +|+..+.+    
T Consensus       215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~  292 (741)
T 1yr2_A          215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDP  292 (741)
T ss_dssp             EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCS
T ss_pred             EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCC
Confidence            48999 99988877654              89999977652  2233322 222467789999998 45544433    


Q ss_pred             -CeEEEEECCCCCce-eEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCC--ceeeEee-CCCCeEEEEE
Q 006743           60 -GTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSR--RPSSCIT-YEAPFSSLAF  130 (633)
Q Consensus        60 -GtI~IWDl~t~~~~-v~~l~~H~~~VtsLafSPdg~~LaSgS~D----GtVrIWDlrtg--k~v~~i~-h~~~ItsLaf  130 (633)
                       ..|++||+.++... ...+..+...+.... .|+++.|+..+.+    +.|++||+.++  +....+. +...+..++|
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~  371 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI  371 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE
Confidence             38999999776211 334455555555554 4888888888764    45999999874  3344443 3344667788


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      . ++.++++...|+..+||.+.........+. ..+.+.|..+.++|+++.++..        +-+....+.|++||+.
T Consensus       372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~--------~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS-LPGIGSASGLSGRPGDRHAYLS--------FSSFTQPATVLALDPA  440 (741)
T ss_dssp             E-BTEEEEEEEETTEEEEEEEETTSCEEEECB-CSSSCEEEEEECCBTCSCEEEE--------EEETTEEEEEEEEETT
T ss_pred             E-CCEEEEEEEECCEEEEEEEeCCCCceeecc-CCCCeEEEEeecCCCCCEEEEE--------EcCCCCCCEEEEEECC
Confidence            7 566778888899877775542112233333 1245678889999876655432        1112235678888874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.74  E-value=1.6e-06  Score=89.65  Aligned_cols=170  Identities=12%  Similarity=0.055  Sum_probs=111.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC---CCCCcEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCCc
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD---PNEQVLRVLDYSRNSRHLLVTAGD------DGTLHLWDTTGRSP   72 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~---~~~~~VssLafSpdg~~lLaSGs~------DGtI~IWDl~t~~~   72 (633)
                      |+++|+++++. .+ .|.+||..+++.......   .....+.+++++++|+ ++++...      .+.|+.++  +++ 
T Consensus        97 ~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~-  170 (326)
T 2ghs_A           97 KISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK-  170 (326)
T ss_dssp             EEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE-
T ss_pred             EeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc-
Confidence            67788766644 44 499999988775433221   1124578899999998 4544332      24566666  333 


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCC--CC-cee--eEe-e---CCCCeEEEEEecCCCEEEEEEc
Q 006743           73 KVSWLKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPG--SR-RPS--SCI-T---YEAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSPdg~~LaSg-S~DGtVrIWDlr--tg-k~v--~~i-~---h~~~ItsLafSPdG~~LatGs~  142 (633)
                       ...+..+....+.++|+|+++.++.+ ..++.|.+||+.  ++ ...  ..+ .   ....+..++++++|++.++...
T Consensus       171 -~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~  249 (326)
T 2ghs_A          171 -VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG  249 (326)
T ss_dssp             -EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET
T ss_pred             -EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC
Confidence             33333344567899999999877555 457899999986  55 321  112 1   2355788999999988777777


Q ss_pred             CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEc-cCCCeE
Q 006743          143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ-RAKPVF  182 (633)
Q Consensus       143 DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafs-Pdg~~L  182 (633)
                      ++.|.+||.. + +.+..+.  .+...+++++|. +++..|
T Consensus       250 ~~~v~~~d~~-g-~~~~~i~--~~~~~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          250 EGAVDRYDTD-G-NHIARYE--VPGKQTTCPAFIGPDASRL  286 (326)
T ss_dssp             TTEEEEECTT-C-CEEEEEE--CSCSBEEEEEEESTTSCEE
T ss_pred             CCEEEEECCC-C-CEEEEEE--CCCCCcEEEEEecCCCCEE
Confidence            7899999984 3 3344444  345679999998 765544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.73  E-value=2.5e-06  Score=90.82  Aligned_cols=191  Identities=10%  Similarity=-0.014  Sum_probs=126.1

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~--DG~I~IWDl~tgk~v~~-~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|+|||++|+++..  ++.|.++| .+++.+.. +..  ..   |+.+.+++...+++.+.||.+.++|. +++.. ...
T Consensus       131 ~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~  202 (373)
T 2mad_H          131 ANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GAG  202 (373)
T ss_pred             EECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EEE
Confidence            47999999998874  47899999 99998877 653  22   24556777667888889999999999 66532 111


Q ss_pred             c-----cCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeEee-----------CCCCeEEEEEecCCCEEE
Q 006743           78 K-----QHSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRP--SSCIT-----------YEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        78 ~-----~H~~~V-tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~--v~~i~-----------h~~~ItsLafSPdG~~La  138 (633)
                      .     ....++ ....+.+++..++..+.++.|.+.|+..+..  +..+.           .......++++|+++.++
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            1     111221 2345667665555555788999999976532  22221           123344578999998888


Q ss_pred             EEEc----------CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          139 AGTS----------NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       139 tGs~----------DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~-~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +...          ++.|.++|..+. +.+..+.   -.....+++|+|+|+ .++++           ...++.|.+||
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~---~g~~p~~i~~s~Dg~~~l~v~-----------~~~~~~V~ViD  347 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQIS---LGHDVDAISVAQDGGPDLYAL-----------SAGTEVLHIYD  347 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCC-EEEEEEE---CCCCcCeEEECCCCCeEEEEE-----------cCCCCeEEEEE
Confidence            7653          357999999887 3344443   334689999999766 33332           22478888888


Q ss_pred             CCCCCCC
Q 006743          208 PLPSVTT  214 (633)
Q Consensus       208 lr~~~~~  214 (633)
                      +......
T Consensus       348 ~~t~~vv  354 (373)
T 2mad_H          348 AGAGDQD  354 (373)
T ss_pred             CCCCCEE
Confidence            8655443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.71  E-value=6.9e-07  Score=92.95  Aligned_cols=180  Identities=8%  Similarity=0.058  Sum_probs=118.8

Q ss_pred             ccCCCCEEEEEEC-----CCcEEEEECCCCceeEEEeCC-----CCCcEEEEEEccCCCeEEEEEe---CCCeEEEEECC
Q 006743            2 YNCKDEHLASISL-----SGDLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNSRHLLVTAG---DDGTLHLWDTT   68 (633)
Q Consensus         2 FSpdG~~LaSgs~-----DG~I~IWDl~tgk~v~~~~~~-----~~~~VssLafSpdg~~lLaSGs---~DGtI~IWDl~   68 (633)
                      |+++|+++++-..     ++.|.+||+.+++.+..+..+     +...+..+++.+++..++++-.   .++.|.+||+.
T Consensus        74 ~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~  153 (343)
T 2qe8_A           74 SDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ  153 (343)
T ss_dssp             ECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred             EcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence            5677765554433     578999999999877766532     1234577899987654566655   68899999998


Q ss_pred             CCCceeEEeccC-----------------------------CCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCC---CCc-
Q 006743           69 GRSPKVSWLKQH-----------------------------SAPTAGISFSSDDKIIASVGLDK-KLYTYDPG---SRR-  114 (633)
Q Consensus        69 t~~~~v~~l~~H-----------------------------~~~VtsLafSPdg~~LaSgS~DG-tVrIWDlr---tgk-  114 (633)
                      +++. .+.+..|                             ...+..|+|+|+++.|+.+..++ .|+.+|..   .+. 
T Consensus       154 ~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~  232 (343)
T 2qe8_A          154 TGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL  232 (343)
T ss_dssp             TCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred             CCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence            6652 3333221                             12368899999999888887766 56666532   111 


Q ss_pred             -------eeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743          115 -------PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       115 -------~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                             .+....+......++++++|.++++...++.|.+||..++.  +..+....+...+.+++|.+++..+++
T Consensus       233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~--~~~~~~~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA--YKLLVTDEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE--EEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred             ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC--EEEEEECCceecCCeeEECCCCcEEEE
Confidence                   01222344567789999999999998889999999984442  222222123456889999886544443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.70  E-value=4.5e-07  Score=103.81  Aligned_cols=176  Identities=13%  Similarity=0.047  Sum_probs=111.9

Q ss_pred             CccCCCCEEEEEE-----CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-------------eE
Q 006743            1 MYNCKDEHLASIS-----LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-------------TL   62 (633)
Q Consensus         1 AFSpdG~~LaSgs-----~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG-------------tI   62 (633)
                      +|||||++||.+.     ....|++||+.+++.+.....  ......++|+ |++. |+.+..+.             .|
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-Dg~~-l~y~~~~~~~~~~~~~~~~~~~v  210 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL-GNEG-FFYSSYDKPDGSELSARTDQHKV  210 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE-TTTE-EEEEESSCCC-------CCCCEE
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe-CCCE-EEEEEecCcccccccccCCCcEE
Confidence            4899999988543     224799999999986543211  1112457899 9984 55555553             49


Q ss_pred             EEEECCCCCce---eEEecc-CCCCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--ceeeEeeCCCCeEEEEEec
Q 006743           63 HLWDTTGRSPK---VSWLKQ-HSAPTAGISFSSDDKIIASVGL----DKKLYTYDPGSR--RPSSCITYEAPFSSLAFID  132 (633)
Q Consensus        63 ~IWDl~t~~~~---v~~l~~-H~~~VtsLafSPdg~~LaSgS~----DGtVrIWDlrtg--k~v~~i~h~~~ItsLafSP  132 (633)
                      ++|++.+....   +..... |...+..+.|+||+++|+....    +..|+++|+.++  +......+....... |++
T Consensus       211 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~  289 (693)
T 3iuj_A          211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDN  289 (693)
T ss_dssp             EEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEE
T ss_pred             EEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eec
Confidence            99999765532   222223 4456788999999998865442    358999999876  344444555555554 667


Q ss_pred             CCCEEEEEEc-C---CeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          133 DDWILTAGTS-N---GRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       133 dG~~LatGs~-D---GsV~IWDlrs~~k-~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +|..|+..+. +   +.|..||+.+... ....+.  .|...+.  .|++++++|+..
T Consensus       290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~--~~s~~g~~lv~~  343 (693)
T 3iuj_A          290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PERQQVL--TVHSGSGYLFAE  343 (693)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCE--EEEEETTEEEEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCCCCEE--EEEEECCEEEEE
Confidence            7666655443 3   6799999987632 123333  3444454  788876665544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.68  E-value=4.5e-09  Score=111.46  Aligned_cols=143  Identities=14%  Similarity=0.121  Sum_probs=78.9

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC-C
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA-P   83 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~-~   83 (633)
                      ++..|++++.||.|+.||..+|+.+..+..  .. +.+..+..++. ++++++.||.|+.||..+++... .+..+.. .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~-~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP-VLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC-SCCCC-----C-CEEECTTTCCEEEC-----CCSE-ECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC-ceecceEcCCC-EEEEeCCCCEEEEEECCCCceee-eeeccCccc
Confidence            578999999999999999999999988875  22 22334445665 67777899999999998776432 2222211 1


Q ss_pred             eE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           84 TA-GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        84 Vt-sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      +. ...+. ++..+++++.|+.|+.||.++|+.+..+....   ...++|++..|++++.|+.|+.||.++++.
T Consensus        83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             HTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             cccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence            10 00111 35577888899999999999999876664333   234567888999999999999999998754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.60  E-value=3.8e-06  Score=90.53  Aligned_cols=147  Identities=6%  Similarity=-0.044  Sum_probs=110.8

Q ss_pred             ccCCCCEEEEEEC-----CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEEC
Q 006743            2 YNCKDEHLASISL-----SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDT   67 (633)
Q Consensus         2 FSpdG~~LaSgs~-----DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs---------~DGtI~IWDl   67 (633)
                      ..|+++.+++...     ++.|.++|..+++.+..+..... . . ++++|+++.++++..         .++.|.+||.
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            4688998888865     67999999999999998875333 2 4 899999995555442         4688999999


Q ss_pred             CCCCceeEEeccC-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEE
Q 006743           68 TGRSPKVSWLKQH-------SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        68 ~t~~~~v~~l~~H-------~~~VtsLafSPdg~~LaSgS~--DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~La  138 (633)
                      .+.+. +..+.-.       ......++|+|||++++++..  ++.|.++|+.+++.+..+...+.  ...+....+.++
T Consensus       117 ~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~  193 (386)
T 3sjl_D          117 VTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF  193 (386)
T ss_dssp             TTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred             CCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence            98874 3333211       124667999999999998874  68999999999999988865432  223333456777


Q ss_pred             EEEcCCeEEEEECCCC
Q 006743          139 AGTSNGRVVFYDIRGK  154 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~  154 (633)
                      +.+.||.+.+.++...
T Consensus       194 ~~~~DG~~~~v~~~~~  209 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTE  209 (386)
T ss_dssp             EEETTSCEEEEECCSS
T ss_pred             EECCCCCEEEEECCCC
Confidence            8889999999999763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.60  E-value=4.9e-06  Score=85.26  Aligned_cols=193  Identities=12%  Similarity=0.129  Sum_probs=128.0

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~--DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+++|..+++.+.  ++.|.++|+.+++.+..+.-........+++.  ++.++++.-.++.|.++|..+.+. +..+.
T Consensus        27 ~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v-~~~i~  103 (266)
T 2iwa_A           27 VYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN-IKNFT  103 (266)
T ss_dssp             EECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE-EEEEE
T ss_pred             EEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE-EEEEE
Confidence            36777644444433  57999999999999988764222222334554  455666666789999999998774 34443


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC------CCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE------APFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~------~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      .....  ...+++|++.++++..++.|.++|..+.+.+..+...      ..+..+.|. +|...+....++.|.+.|..
T Consensus       104 ~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          104 HQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK  180 (266)
T ss_dssp             CCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred             CCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence            22121  2335557777777778899999999998888777422      246788888 67544444457899999999


Q ss_pred             CCCCceEEEeecC-----------CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          153 GKPQPLTVLRACS-----------SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       153 s~~k~v~~l~~~~-----------H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ++ +.+..+...+           .......|+|+|++           ..+++++.....|.+.|+.+.
T Consensus       181 tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~-----------~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          181 DG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN-----------KRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT-----------TEEEEEETTCSEEEEEEEEEC
T ss_pred             CC-cEEEEEECCCcccccccccccccCceEEEEEcCCC-----------CEEEEECCCCCeEEEEEEecc
Confidence            88 4555555321           11356899999964           345566666777777776543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.55  E-value=4.9e-06  Score=95.18  Aligned_cols=194  Identities=14%  Similarity=0.149  Sum_probs=122.1

Q ss_pred             CccCCCCEEEEEECCC-------------cEEEEECCCCce--eEEEeCCC--CCcEEEEEEccCCCeEEEEEeCC---C
Q 006743            1 MYNCKDEHLASISLSG-------------DLILHNLASGAK--AAELKDPN--EQVLRVLDYSRNSRHLLVTAGDD---G   60 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG-------------~I~IWDl~tgk~--v~~~~~~~--~~~VssLafSpdg~~lLaSGs~D---G   60 (633)
                      +|+ ||+.|+.+..+.             .|++|++.++..  ...+....  ...+..+.|+|+++.++++...+   .
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  259 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN  259 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence            488 999999888774             399999987653  33333221  23355689999999665655533   5


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe-CC---CeEEEEeCCCCce---eeEeeCCCCeEEEEEecC
Q 006743           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LD---KKLYTYDPGSRRP---SSCITYEAPFSSLAFIDD  133 (633)
Q Consensus        61 tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS-~D---GtVrIWDlrtgk~---v~~i~h~~~ItsLafSPd  133 (633)
                      .|++||+.+.......+..+...+... |++++..|+..+ .+   +.|..+|+.++..   ...+.+...+.  .|+++
T Consensus       260 ~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~  336 (693)
T 3iuj_A          260 RLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG  336 (693)
T ss_dssp             EEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE
T ss_pred             EEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE
Confidence            899999977643345566666666665 666666555444 33   5899999988754   33445555554  88999


Q ss_pred             CCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          134 DWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       134 G~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +++|+.... ++  .|++||+...  ....+. ....+.+..+.+++++..++....        +...-..+..||+.
T Consensus       337 g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l~-~p~~~~~~~~~~~~d~~~l~~~~s--------s~~tP~~l~~~d~~  404 (693)
T 3iuj_A          337 SGYLFAEYMVDATARVEQFDYEGK--RVREVA-LPGLGSVSGFNGKHDDPALYFGFE--------NYAQPPTLYRFEPK  404 (693)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTSC--EEEEEC-CSSSSEEEECCCCTTCSCEEEEEE--------CSSSCCEEEEECTT
T ss_pred             CCEEEEEEEECCeeEEEEEECCCC--eeEEee-cCCCceEEeeecCCCCCEEEEEec--------CCCCCCEEEEEECC
Confidence            988876655 44  6899998754  223333 224455667777766544432210        00123677777764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.53  E-value=8.9e-07  Score=92.11  Aligned_cols=193  Identities=7%  Similarity=0.026  Sum_probs=117.3

Q ss_pred             CccCCCCEEEEEE--CCCcEEEEECCCCceeEEEeC------CCCCcEEEEEEccCCCeEEEEEeC-----CCeEEEEEC
Q 006743            1 MYNCKDEHLASIS--LSGDLILHNLASGAKAAELKD------PNEQVLRVLDYSRNSRHLLVTAGD-----DGTLHLWDT   67 (633)
Q Consensus         1 AFSpdG~~LaSgs--~DG~I~IWDl~tgk~v~~~~~------~~~~~VssLafSpdg~~lLaSGs~-----DGtI~IWDl   67 (633)
                      +++++|+.+++..  .++.++||.+.+++ +..+..      .+...+..|++.++++ ++++-..     ++.|.+||+
T Consensus        23 a~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~  100 (343)
T 2qe8_A           23 TLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDT  100 (343)
T ss_dssp             EECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEET
T ss_pred             EECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEEC
Confidence            4678999888764  23435555554554 332321      1335678899999986 4444332     579999999


Q ss_pred             CCCCceeEEecc------CCCCeEEEEEcCCCCEE-EEEe---CCCeEEEEeCCCCceeeEeeC----------------
Q 006743           68 TGRSPKVSWLKQ------HSAPTAGISFSSDDKII-ASVG---LDKKLYTYDPGSRRPSSCITY----------------  121 (633)
Q Consensus        68 ~t~~~~v~~l~~------H~~~VtsLafSPdg~~L-aSgS---~DGtVrIWDlrtgk~v~~i~h----------------  121 (633)
                      .+++. +..+..      +...+..+++++++..+ ++-.   .++.|.+||+.+++....+..                
T Consensus       101 ~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~  179 (343)
T 2qe8_A          101 LNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV  179 (343)
T ss_dssp             TTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred             CCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence            87763 232221      23457899999855444 5544   578999999988776554311                


Q ss_pred             --------------CCCeEEEEEecCCCEEEEEEcCC-eEEEEECCC---CC----CceEEEeecCCCCCeeEEEEccCC
Q 006743          122 --------------EAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRG---KP----QPLTVLRACSSSEAVSSLCWQRAK  179 (633)
Q Consensus       122 --------------~~~ItsLafSPdG~~LatGs~DG-sV~IWDlrs---~~----k~v~~l~~~~H~~~VtsLafsPdg  179 (633)
                                    ...+..|+|+|+|+.|+.+..++ .|+.++...   ..    +....+...++.+....++++++|
T Consensus       180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G  259 (343)
T 2qe8_A          180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH  259 (343)
T ss_dssp             ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC
T ss_pred             EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC
Confidence                          12368899999999998887766 566665421   10    000000111233455677887754


Q ss_pred             CeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          180 PVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       180 ~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                                  .++++...++.|.+||.
T Consensus       260 ------------~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          260 ------------NIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             ------------CEEEEEGGGTEEEEEET
T ss_pred             ------------CEEEEccCCCeEEEEEC
Confidence                        44445556778888886

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.53  E-value=1.3e-06  Score=88.90  Aligned_cols=172  Identities=10%  Similarity=0.122  Sum_probs=109.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEe---CCCCCcEEEEEEccCCCeEEEE----EeC-------------CC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVT----AGD-------------DG   60 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~---~~~~~~VssLafSpdg~~lLaS----Gs~-------------DG   60 (633)
                      +|+++|+++++...++.|.+|+.. ++......   +.....+..+++.++|+ ++++    |..             .+
T Consensus        92 ~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A           92 AVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             eECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCC
Confidence            367888866555456789999975 55322211   11122356789999998 6665    332             25


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCcee--eEe--eCCCCeEEEEE
Q 006743           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPS--SCI--TYEAPFSSLAF  130 (633)
Q Consensus        61 tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D------GtVrIWDlrtgk~v--~~i--~h~~~ItsLaf  130 (633)
                      .|+.||..+++..  .+. .....+.++|+|+++.|+.+...      +.|++||+..+...  ..+  ...+.+..+++
T Consensus       170 ~v~~~d~~~g~~~--~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~  246 (305)
T 3dr2_A          170 SVYRLPPDGSPLQ--RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV  246 (305)
T ss_dssp             EEEEECSSSCCCE--EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred             eEEEEcCCCCcEE--EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence            6777877666532  222 44567899999999988877665      78999998765421  111  12345667899


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                      +++|++ .+++.+| |++||....  .+..+..  + ..+.+++|.++++.|..
T Consensus       247 d~~G~l-wv~~~~g-v~~~~~~g~--~~~~~~~--~-~~~~~~~f~~d~~~L~i  293 (305)
T 3dr2_A          247 DRGGWL-WSSSGTG-VCVFDSDGQ--LLGHIPT--P-GTASNCTFDQAQQRLFI  293 (305)
T ss_dssp             CTTSCE-EECCSSE-EEEECTTSC--EEEEEEC--S-SCCCEEEECTTSCEEEE
T ss_pred             CCCCCE-EEecCCc-EEEECCCCC--EEEEEEC--C-CceeEEEEeCCCCEEEE
Confidence            999994 4444544 999998543  3444442  2 35889999886555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.53  E-value=1.6e-05  Score=84.54  Aligned_cols=146  Identities=11%  Similarity=0.008  Sum_probs=99.1

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEEeCC-C-----CCcEEEEEEccCCCeEEEEEe-C-CCeE
Q 006743            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDP-N-----EQVLRVLDYSRNSRHLLVTAG-D-DGTL   62 (633)
Q Consensus         1 AFSpdG~~LaSgs----------~DG~I~IWDl~tgk~v~~~~~~-~-----~~~VssLafSpdg~~lLaSGs-~-DGtI   62 (633)
                      +|+|||++|+++.          .++.|.+||..+.+.+..+... .     ......+.|+|+|+ +|+.+. . ++.|
T Consensus        72 ~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v  150 (373)
T 2mad_H           72 VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAV  150 (373)
T ss_pred             EECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeE
Confidence            4899999999886          3678999999998888777532 0     12234689999999 555555 3 5889


Q ss_pred             EEEECCCCCceeEE-eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEee------CCCC-eEEEEEecC
Q 006743           63 HLWDTTGRSPKVSW-LKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCIT------YEAP-FSSLAFIDD  133 (633)
Q Consensus        63 ~IWDl~t~~~~v~~-l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i~------h~~~-ItsLafSPd  133 (633)
                      .++| .+.+. +.. +. ...   |+.+.|+ .+.+++.+.||.+.++|. +++.+....      ...+ .....+.++
T Consensus       151 ~viD-~t~~~-~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          151 GLVV-QGGSS-DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEE-CCCCE-EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            9999 88773 333 32 222   2445564 456677888999999999 877663321      1112 223456676


Q ss_pred             CCEEEEEEcCCeEEEEECCCC
Q 006743          134 DWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       134 G~~LatGs~DGsV~IWDlrs~  154 (633)
                      +..++..+..+.|++.|+...
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCC
Confidence            665555557889999999764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.46  E-value=1e-05  Score=88.66  Aligned_cols=192  Identities=8%  Similarity=0.031  Sum_probs=126.6

Q ss_pred             CCCCEEEEE-ECCCcEEEEECCCC----ceeEEEe------CCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEE
Q 006743            4 CKDEHLASI-SLSGDLILHNLASG----AKAAELK------DPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWD   66 (633)
Q Consensus         4 pdG~~LaSg-s~DG~I~IWDl~tg----k~v~~~~------~~~~~~VssLafSpdg~~lLaSGs~D------GtI~IWD   66 (633)
                      .++++|++. ..++.|+|+|+.+.    +.++.+.      ......-..+.+.|++  +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            778877764 56789999998755    4555552      0011133456788998  56665555      7899999


Q ss_pred             CCCCCceeEEeccC--C-CCeEEEEEcCCCCEEEEEe-------------------CCCeEEEEeCCCCceeeEeeCC--
Q 006743           67 TTGRSPKVSWLKQH--S-APTAGISFSSDDKIIASVG-------------------LDKKLYTYDPGSRRPSSCITYE--  122 (633)
Q Consensus        67 l~t~~~~v~~l~~H--~-~~VtsLafSPdg~~LaSgS-------------------~DGtVrIWDlrtgk~v~~i~h~--  122 (633)
                      ..+.+. +..+...  . ..-+.+-|+|+++.+++..                   .+..|.+||+.+++.+..+...  
T Consensus       171 ~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          171 HYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             TTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             CCCCeE-EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            998884 4444422  1 2345688999999888875                   3679999999998888777653  


Q ss_pred             -CCeEEEEE--ecCCCEEEEEEc------CCeEEEEECCCCC-CceEEEeecCC----------------CCCeeEEEEc
Q 006743          123 -APFSSLAF--IDDDWILTAGTS------NGRVVFYDIRGKP-QPLTVLRACSS----------------SEAVSSLCWQ  176 (633)
Q Consensus       123 -~~ItsLaf--SPdG~~LatGs~------DGsV~IWDlrs~~-k~v~~l~~~~H----------------~~~VtsLafs  176 (633)
                       .....+.|  +|+++++++++.      ++.|.+|....+. ....++.....                ......|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence             34555656  999999888875      5678776655421 01111110000                2346788888


Q ss_pred             cCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          177 RAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       177 Pdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +||++|.           ++.-.++.|.+||+.
T Consensus       330 ~DGrfLY-----------VSnrg~d~VavfdV~  351 (462)
T 2ece_A          330 LDDKFLY-----------LSLWGIGEVRQYDIS  351 (462)
T ss_dssp             TTSCEEE-----------EEETTTTEEEEEECS
T ss_pred             CCCCEEE-----------EEeCCCCEEEEEEec
Confidence            8766654           444557889999885

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.45  E-value=8.3e-06  Score=83.33  Aligned_cols=171  Identities=14%  Similarity=0.206  Sum_probs=113.7

Q ss_pred             ccCCCCEEEEEECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            2 YNCKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSpdG~~LaSgs~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      |+ ++.++.+.+.+|  .|+++|+++++.+..+.......--.++.  +++.+++..-.++.+.+||..+.+. +..+..
T Consensus        50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~-~~ti~~  125 (262)
T 3nol_A           50 YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ-VRSFNY  125 (262)
T ss_dssp             EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE-EEEEEC
T ss_pred             EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE-EEEEEC
Confidence            45 555556666666  89999999999998887532221122333  4555666666799999999998884 344432


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC---C---CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---E---APFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h---~---~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      .. .=..++  ++++.|+....++.|.++|..+.+.+..+..   .   ..++.+.|. +|+..+..-.++.|.+.|.++
T Consensus       126 ~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          126 DG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             SS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred             CC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence            22 113344  5677777777788999999999988877642   1   335567776 675444444688999999998


Q ss_pred             CCCceEEEeecCC----------CCCeeEEEEccCCCe
Q 006743          154 KPQPLTVLRACSS----------SEAVSSLCWQRAKPV  181 (633)
Q Consensus       154 ~~k~v~~l~~~~H----------~~~VtsLafsPdg~~  181 (633)
                      + +.+..+...+-          ......|+|+|+++.
T Consensus       202 G-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~  238 (262)
T 3nol_A          202 G-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR  238 (262)
T ss_dssp             C-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred             C-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence            8 45555554211          235689999996443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.41  E-value=1.3e-05  Score=86.43  Aligned_cols=194  Identities=11%  Similarity=0.052  Sum_probs=126.6

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeEEe
Q 006743            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~--DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t-~~~~v~~l   77 (633)
                      +|+|||++|+++..  ++.|.++|+.+++.+..+...  ..   ..+.|.+.+.+++.+.||.+.+.++.. ++. ....
T Consensus       143 a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-~~~~  216 (386)
T 3sjl_D          143 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--DC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-EITH  216 (386)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE---EEEEEEETTEEEEEETTSCEEEEECCSSSCC-EEEE
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--Cc---ceeecCCCceeEEECCCCCEEEEECCCCCeE-EEee
Confidence            47899999998864  689999999999999988642  21   123355544777888999999999976 442 2211


Q ss_pred             ccC----CCCeE-EEEEc-CCCCEEEEEeCCCeEEEEeCCCCce--eeEee-----------CCCCeEEEEEecCCCEEE
Q 006743           78 KQH----SAPTA-GISFS-SDDKIIASVGLDKKLYTYDPGSRRP--SSCIT-----------YEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        78 ~~H----~~~Vt-sLafS-Pdg~~LaSgS~DGtVrIWDlrtgk~--v~~i~-----------h~~~ItsLafSPdG~~La  138 (633)
                      ..+    ...+. ...|. ++|++++ .+.+|.|++.|+.++..  ...+.           ....+..++++++++.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly  295 (386)
T 3sjl_D          217 TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  295 (386)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence            111    12221 24664 4775444 66689999999976643  22121           123445678899998888


Q ss_pred             EEEc----------CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          139 AGTS----------NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       139 tGs~----------DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~-~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +...          .+.|.++|+.+.+ .++.+..   ...+.+|+++++++ .|           +++...++.|.++|
T Consensus       296 V~~~~~~~~~hk~~~~~V~viD~~t~k-v~~~i~v---g~~~~~lavs~D~~~~l-----------y~tn~~~~~VsViD  360 (386)
T 3sjl_D          296 LLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFEM---GHEIDSINVSQDEKPLL-----------YALSTGDKTLYIHD  360 (386)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEE---EEEECEEEECSSSSCEE-----------EEEETTTTEEEEEE
T ss_pred             EEeccccccccCCCCCEEEEEECCCCe-EEEEEEC---CCCcceEEECCCCCeEE-----------EEEcCCCCeEEEEE
Confidence            7653          2579999999984 4444442   24688999999754 22           23334578888888


Q ss_pred             CCCCCCCCc
Q 006743          208 PLPSVTTSS  216 (633)
Q Consensus       208 lr~~~~~ss  216 (633)
                      ........+
T Consensus       361 ~~t~k~~~~  369 (386)
T 3sjl_D          361 AESGEELRS  369 (386)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCcEEEE
Confidence            866554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.41  E-value=7.1e-06  Score=94.41  Aligned_cols=178  Identities=15%  Similarity=0.165  Sum_probs=117.8

Q ss_pred             ccCCCCEEEEEECCCc-------------------EEEEECCCCceeEEEeCCCC--------CcEEEEEEccCCC--eE
Q 006743            2 YNCKDEHLASISLSGD-------------------LILHNLASGAKAAELKDPNE--------QVLRVLDYSRNSR--HL   52 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~-------------------I~IWDl~tgk~v~~~~~~~~--------~~VssLafSpdg~--~l   52 (633)
                      |++++++|+.+..++.                   |..||..+|+.+-.++..+.        ..+.......++.  ..
T Consensus       242 ~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~  321 (689)
T 1yiq_A          242 YDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKV  321 (689)
T ss_dssp             EETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEE
Confidence            5677888888877763                   99999999999988764211        1111122222442  36


Q ss_pred             EEEEeCCCeEEEEECCCCCceeEEeccC---------------------------CC-----------CeEEEEEcCCCC
Q 006743           53 LVTAGDDGTLHLWDTTGRSPKVSWLKQH---------------------------SA-----------PTAGISFSSDDK   94 (633)
Q Consensus        53 LaSGs~DGtI~IWDl~t~~~~v~~l~~H---------------------------~~-----------~VtsLafSPdg~   94 (633)
                      ++.++.+|.++++|..+++.....-...                           ..           .-..++|+|+..
T Consensus       322 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~  401 (689)
T 1yiq_A          322 LMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG  401 (689)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             EEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC
Confidence            8889999999999999888532111110                           00           011268888877


Q ss_pred             EEEEEeC---------------------------------------------CCeEEEEeCCCCceeeEeeCCCCeEEEE
Q 006743           95 IIASVGL---------------------------------------------DKKLYTYDPGSRRPSSCITYEAPFSSLA  129 (633)
Q Consensus        95 ~LaSgS~---------------------------------------------DGtVrIWDlrtgk~v~~i~h~~~ItsLa  129 (633)
                      ++++...                                             +|.|+.||+.+++.+..+.+..++....
T Consensus       402 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~  481 (689)
T 1yiq_A          402 LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGT  481 (689)
T ss_dssp             EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCE
T ss_pred             EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCcc
Confidence            7776532                                             3789999999999887776555555556


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 006743          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV  181 (633)
Q Consensus       130 fSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~  181 (633)
                      +...+..|++|+.||.|+.||.++++. +..+.. .+.....-+.|..+|+.
T Consensus       482 ~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~-~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          482 LSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPA-ASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCE-EEEEEC-SSCCCSCCEEEEETTEE
T ss_pred             ceECCCEEEEECCCCcEEEEECCCCcc-ceeeeC-CCCcccCceEEEECCEE
Confidence            667788999999999999999999853 333332 22222334566666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.40  E-value=6e-06  Score=90.04  Aligned_cols=196  Identities=12%  Similarity=0.074  Sum_probs=129.8

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE---
Q 006743            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS---   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~--DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~---   75 (633)
                      +|+|||++|+++..  ++.|.+.|+.+++.+..+...  ..   ....|++...+++.+.||.+.+.+....+....   
T Consensus       183 ~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~  257 (426)
T 3c75_H          183 ALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--DC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE  257 (426)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred             EEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--Cc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence            47899999999874  578999999999999888742  21   234455545777888899988888855442211   


Q ss_pred             EeccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE--ee-----------CCCCeEEEEEecCCCEEEEEE
Q 006743           76 WLKQHSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--IT-----------YEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        76 ~l~~H~~~V-tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~--i~-----------h~~~ItsLafSPdG~~LatGs  141 (633)
                      .+.....++ ..+.|.+++..++.....+.|.+.|+........  +.           .......++++|+++.+++..
T Consensus       258 ~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~  337 (426)
T 3c75_H          258 VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV  337 (426)
T ss_dssp             CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred             eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence            111111221 2356788888888888899999999876543211  11           112223478999998877765


Q ss_pred             c----------CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          142 S----------NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       142 ~----------DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~-~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .          ++.|.++|..+. +.+..+..   .....++.|+|+++ .+++           +...++.|.++|+..
T Consensus       338 ~~~~~gthk~~s~~VsVID~~T~-kvv~~I~v---g~~P~gia~spDg~~~lyv-----------~n~~s~~VsVID~~t  402 (426)
T 3c75_H          338 DQRDEWKHKAASRFVVVLNAETG-ERINKIEL---GHEIDSINVSQDAEPLLYA-----------LSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTC-CEEEEEEE---EEEECEEEECCSSSCEEEE-----------EETTTTEEEEEETTT
T ss_pred             cccccccccCCCCEEEEEECCCC-eEEEEEEC---CCCcCeEEEccCCCEEEEE-----------EcCCCCeEEEEECCC
Confidence            3          357999999988 34444442   23588999999765 3333           233588888998876


Q ss_pred             CCCCCc
Q 006743          211 SVTTSS  216 (633)
Q Consensus       211 ~~~~ss  216 (633)
                      .....+
T Consensus       403 ~kvv~t  408 (426)
T 3c75_H          403 GEELRS  408 (426)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            655433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.39  E-value=7.9e-06  Score=92.21  Aligned_cols=192  Identities=10%  Similarity=-0.043  Sum_probs=134.1

Q ss_pred             CCCCEEEEEECC-CcEEEEECCCCceeEEEeCCCCCcEEEEEE-c-cCCCeEEEEEe------------------CCCeE
Q 006743            4 CKDEHLASISLS-GDLILHNLASGAKAAELKDPNEQVLRVLDY-S-RNSRHLLVTAG------------------DDGTL   62 (633)
Q Consensus         4 pdG~~LaSgs~D-G~I~IWDl~tgk~v~~~~~~~~~~VssLaf-S-pdg~~lLaSGs------------------~DGtI   62 (633)
                      +||++|++...+ +.|.+.|+.+.++...+..........+++ . |+++ ++++++                  .++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceE
Confidence            478888887764 569999999999888665445556778887 4 8888 455553                  35689


Q ss_pred             EEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------e
Q 006743           63 HLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--------------------------------------K  104 (633)
Q Consensus        63 ~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG--------------------------------------t  104 (633)
                      .+.|..+.+.. ..+.... .-..++++|+|+++++.+.+.                                      .
T Consensus       178 tvID~~t~~v~-~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          178 TAVDADKWEVA-WQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEETTTTEEE-EEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEECCCCeEE-EEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            99999987643 3332222 346688999999999888553                                      4


Q ss_pred             EEEEeCCC--Cce-eeEeeCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCc--------eEEEeecCCCCCeeE
Q 006743          105 LYTYDPGS--RRP-SSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQP--------LTVLRACSSSEAVSS  172 (633)
Q Consensus       105 VrIWDlrt--gk~-v~~i~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k~--------v~~l~~~~H~~~Vts  172 (633)
                      |.+.|.++  ++. +..+.......++.++|||+++++++ .+.+|.+||+.+.+..        ........-......
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h  335 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  335 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred             EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence            77888887  545 55666566778899999999888766 5789999999864210        011122233456888


Q ss_pred             EEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          173 LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       173 LafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ++|+++|            ..+++.-.|+.|.+||+..
T Consensus       336 ~aF~~dG------------~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          336 TAFDGRG------------NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEECTTS------------EEEEEETTTTEEEEEEHHH
T ss_pred             EEECCCC------------eEEEEEecCCcEEEEEhhH
Confidence            9999964            3445556688888898754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.38  E-value=2.6e-06  Score=91.07  Aligned_cols=172  Identities=13%  Similarity=0.035  Sum_probs=113.3

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEEeCCC------CCcEEEEEEccCCCeEEEEEeC--CCeE
Q 006743            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDPN------EQVLRVLDYSRNSRHLLVTAGD--DGTL   62 (633)
Q Consensus         1 AFSpdG~~LaSgs----------~DG~I~IWDl~tgk~v~~~~~~~------~~~VssLafSpdg~~lLaSGs~--DGtI   62 (633)
                      +|+|||++++++.          .++.|.+||+.+++.+..+..+.      ......++++|+|+. ++.+..  +..|
T Consensus        71 ~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~-lyVan~~~~~~v  149 (368)
T 1mda_H           71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAA  149 (368)
T ss_dssp             EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEE
T ss_pred             EECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE-EEEEccCCCCeE
Confidence            4799999998886          36889999999999999886320      012235889999984 555543  4567


Q ss_pred             EE--EECCC------CCc--------------------eeEEecc-----------------------------------
Q 006743           63 HL--WDTTG------RSP--------------------KVSWLKQ-----------------------------------   79 (633)
Q Consensus        63 ~I--WDl~t------~~~--------------------~v~~l~~-----------------------------------   79 (633)
                      .+  +|..+      ..+                    ....+..                                   
T Consensus       150 ~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs  229 (368)
T 1mda_H          150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc
Confidence            77  77632      000                    0000000                                   


Q ss_pred             -----------CC---------------------CCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeeE
Q 006743           80 -----------HS---------------------APTAGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSC  118 (633)
Q Consensus        80 -----------H~---------------------~~VtsLafSPdg~~LaSgS~---------DGtVrIWDlrtgk~v~~  118 (633)
                                 ..                     .....++++|++++++++..         ++.+.++|+.+++.+..
T Consensus       230 ~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~  309 (368)
T 1mda_H          230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP  309 (368)
T ss_dssp             SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred             CCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence                       00                     00011678898888887643         23567999999999888


Q ss_pred             eeCCCCeEEEEEecCCCE-EEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          119 ITYEAPFSSLAFIDDDWI-LTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       119 i~h~~~ItsLafSPdG~~-LatGs-~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      +.......+++|+|||++ +++.. .++.|.++|+.+. +.+..+.   -.....++++++
T Consensus       310 i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~---vg~~P~~i~~~~  366 (368)
T 1mda_H          310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE---LDKGPESLSVQN  366 (368)
T ss_dssp             CEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC---CCSCCCEEECCC
T ss_pred             EECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE---CCCCCCEEEeec
Confidence            866667999999999985 55555 5899999999987 3333333   334455666544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.38  E-value=1.2e-05  Score=92.30  Aligned_cols=178  Identities=12%  Similarity=0.187  Sum_probs=121.1

Q ss_pred             ccCCCCEEEEEECCC-------------------cEEEEECCCCceeEEEeCCCC--------CcEEEEEEccCCC--eE
Q 006743            2 YNCKDEHLASISLSG-------------------DLILHNLASGAKAAELKDPNE--------QVLRVLDYSRNSR--HL   52 (633)
Q Consensus         2 FSpdG~~LaSgs~DG-------------------~I~IWDl~tgk~v~~~~~~~~--------~~VssLafSpdg~--~l   52 (633)
                      |+++++.|+.+..++                   .|..+|..+|+.+-.++..+.        .....+....+|+  ..
T Consensus       250 ~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~  329 (677)
T 1kb0_A          250 FDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKV  329 (677)
T ss_dssp             EETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeE
Confidence            467788888877654                   499999999999888764221        1112233344662  47


Q ss_pred             EEEEeCCCeEEEEECCCCCceeEEeccC----------CCCe------------------------EEEEEcCCCCEEEE
Q 006743           53 LVTAGDDGTLHLWDTTGRSPKVSWLKQH----------SAPT------------------------AGISFSSDDKIIAS   98 (633)
Q Consensus        53 LaSGs~DGtI~IWDl~t~~~~v~~l~~H----------~~~V------------------------tsLafSPdg~~LaS   98 (633)
                      ++.++.+|.|+++|..+++.....-...          ...+                        ..++++|+..++++
T Consensus       330 l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv  409 (677)
T 1kb0_A          330 ILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL  409 (677)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE
T ss_pred             EEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEE
Confidence            8999999999999999888532211110          0111                        14688998888877


Q ss_pred             EeCC-------------------------------------------CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCC
Q 006743           99 VGLD-------------------------------------------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW  135 (633)
Q Consensus        99 gS~D-------------------------------------------GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~  135 (633)
                      ...+                                           +.|..||+.+++.+..+.+..++....+..++.
T Consensus       410 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          410 PAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGN  489 (677)
T ss_dssp             EEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTT
T ss_pred             eChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCC
Confidence            6432                                           789999999999888877666666666777888


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 006743          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV  181 (633)
Q Consensus       136 ~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~  181 (633)
                      .+++++.||.|++||.++++ .+..+.. .+.....-+.|..+|+.
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~-~lw~~~~-~~~~~~~p~~y~~~G~~  533 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGE-KLWEAPT-GTGVVAAPSTYMVDGRQ  533 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCC-EEEEEEC-SSCCCSCCEEEEETTEE
T ss_pred             EEEEECCCCcEEEEECCCCc-eeeeeeC-CCCcccCCEEEEeCCEE
Confidence            99999999999999999984 3344432 23333344555566543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.32  E-value=0.00035  Score=69.26  Aligned_cols=152  Identities=10%  Similarity=0.027  Sum_probs=100.7

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+++++.|+.+. .++.|.++++........+.. .......+++.+++.+++++-...+.|.+++..+.... .....
T Consensus        42 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~  119 (267)
T 1npe_A           42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDT  119 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS
T ss_pred             EEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEEC
Confidence            3567666666555 467899999865544333322 22456789999977656667677889999999765422 22222


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGL---DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGK  154 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~---DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~  154 (633)
                      .......++++|++..|+.+..   .+.|..+++......... ........+++++++..|..+. ..+.|.++|+...
T Consensus       120 ~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence            2356789999996666655554   368888888643322222 2234688999999877766555 5688999999754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.31  E-value=0.00019  Score=71.29  Aligned_cols=187  Identities=12%  Similarity=0.044  Sum_probs=117.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCcee-----EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            6 DEHLASISLSGDLILHNLASGAKA-----AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v-----~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |.+|+.+.. +.|+.+++......     ..+.. .......++|++++..++++-..++.|.+++..+... ...+...
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~   77 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQD   77 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTT
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECC
Confidence            445666653 57999998654321     11111 1234567999997776777766789999999987653 2233333


Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeeEeeC-CCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCC
Q 006743           81 SAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITY-EAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKP  155 (633)
Q Consensus        81 ~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtgk~v~~i~h-~~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~  155 (633)
                      .....++++++++..|+ +-...+.|.++|+........... ......++++|++..|+.+..   .+.|+.+++....
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~  157 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence            35789999999655554 445567999999875433333322 256789999997666665554   3689999987542


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .  ..+.. ........+++++++..|           +++....+.|.++|+.
T Consensus       158 ~--~~~~~-~~~~~P~gia~d~~~~~l-----------yv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          158 R--RILAQ-DNLGLPNGLTFDAFSSQL-----------CWVDAGTHRAECLNPA  197 (267)
T ss_dssp             C--EEEEC-TTCSCEEEEEEETTTTEE-----------EEEETTTTEEEEEETT
T ss_pred             c--EEEEE-CCCCCCcEEEEcCCCCEE-----------EEEECCCCEEEEEecC
Confidence            2  22221 223467889998864444           3444445667666653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.29  E-value=3.2e-05  Score=84.74  Aligned_cols=181  Identities=12%  Similarity=0.053  Sum_probs=119.7

Q ss_pred             ccCCCCEEEEEECC------CcEEEEECCCCceeEEEeCCC--CCcEEEEEEccCCCeEEEEEe----------------
Q 006743            2 YNCKDEHLASISLS------GDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAG----------------   57 (633)
Q Consensus         2 FSpdG~~LaSgs~D------G~I~IWDl~tgk~v~~~~~~~--~~~VssLafSpdg~~lLaSGs----------------   57 (633)
                      ..|+| .++++..+      |.|.++|.++.+.+..+....  ...-..+.|+|+++ .+++..                
T Consensus       145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~  222 (462)
T 2ece_A          145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHL  222 (462)
T ss_dssp             ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTH
T ss_pred             ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhh
Confidence            35788 66665444      789999999999998886321  12233478899998 677764                


Q ss_pred             ---CCCeEEEEECCCCCceeEEeccC--CCCeEEEEE--cCCCCEEEEEeC------CCeEEEEeCCCCce--eeEe--e
Q 006743           58 ---DDGTLHLWDTTGRSPKVSWLKQH--SAPTAGISF--SSDDKIIASVGL------DKKLYTYDPGSRRP--SSCI--T  120 (633)
Q Consensus        58 ---~DGtI~IWDl~t~~~~v~~l~~H--~~~VtsLaf--SPdg~~LaSgS~------DGtVrIWDlrtgk~--v~~i--~  120 (633)
                         .+..|.+||+.+.+ .+..+...  ......+.|  +|+++++++++.      +++|.+|....++.  ...+  .
T Consensus       223 ~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~  301 (462)
T 2ece_A          223 KDRYGNRIHFWDLRKRK-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP  301 (462)
T ss_dssp             HHHSCCEEEEEETTTTE-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             hhccCCEEEEEECCCCc-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence               37899999998765 34444432  123455656  999999888774      55787665544321  1111  0


Q ss_pred             C-----------------CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCC--ceEEEeecCC------------CC
Q 006743          121 Y-----------------EAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQ--PLTVLRACSS------------SE  168 (633)
Q Consensus       121 h-----------------~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~k--~v~~l~~~~H------------~~  168 (633)
                      .                 ...+..+.+++||++|.++.. .+.|.+||+.....  .+..+..-+.            .+
T Consensus       302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~g  381 (462)
T 2ece_A          302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTG  381 (462)
T ss_dssp             CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCS
T ss_pred             CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCC
Confidence            0                 245788999999999998876 68899999864322  2233322111            01


Q ss_pred             CeeEEEEccCCCeEEEe
Q 006743          169 AVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~  185 (633)
                      .-..++++|+|++|+..
T Consensus       382 gPr~~~lSpDGk~LyVa  398 (462)
T 2ece_A          382 APQMLEISRDGRRVYVT  398 (462)
T ss_dssp             CCCCEEECTTSSEEEEE
T ss_pred             CCCEEEEcCCCCEEEEE
Confidence            35889999999888776

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.29  E-value=5.7e-05  Score=77.34  Aligned_cols=166  Identities=11%  Similarity=0.051  Sum_probs=112.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt   85 (633)
                      +.++++.+.+|.|+++|+++++.+..+ -.....-..+++  +++.+++..-.++.+.+||..+.+. +..+..- ..-.
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~-~~ti~~~-~eGw  139 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQR-ERTTRYS-GEGW  139 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEE-EEEEECS-SCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcE-EEEEeCC-Ccee
Confidence            445556677889999999999988877 222211122444  4555777777899999999998874 3344322 2224


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC---C---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---E---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h---~---~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      .++  ++++.|+....++.|.++|..+.+.+..+..   .   ..++.+.|. +|+..+..-.++.|.+.|.+++ +.+.
T Consensus       140 GLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG-~V~~  215 (268)
T 3nok_A          140 GLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG-TVVG  215 (268)
T ss_dssp             CEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC-BEEE
T ss_pred             EEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC-cEEE
Confidence            444  4578888888899999999999988877742   1   245677887 6754444445789999999988 4555


Q ss_pred             EEeec-----------CCCCCeeEEEEccCCC
Q 006743          160 VLRAC-----------SSSEAVSSLCWQRAKP  180 (633)
Q Consensus       160 ~l~~~-----------~H~~~VtsLafsPdg~  180 (633)
                      .+...           .-......|+|+|+++
T Consensus       216 ~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          216 VIDASALTRAVAGQVTNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             EEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred             EEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence            55532           1224678999999643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.25  E-value=0.00016  Score=73.92  Aligned_cols=177  Identities=10%  Similarity=0.087  Sum_probs=113.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC-------------------CCcEEEEEEcc-CCCeEEEEEeCCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPN-------------------EQVLRVLDYSR-NSRHLLVTAGDDG   60 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~-------------------~~~VssLafSp-dg~~lLaSGs~DG   60 (633)
                      +|+++|++++++..++.|..||..+++.. .+....                   ......|++.+ +++  |+.+...+
T Consensus        25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~--l~v~d~~~  101 (322)
T 2fp8_A           25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ--LYIVDCYY  101 (322)
T ss_dssp             ECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--EEEEETTT
T ss_pred             EEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc--EEEEECCC
Confidence            46788887888888999999998665433 222100                   12357789987 554  55555556


Q ss_pred             eEEEEECCCCCceeEEecc-----CCCCeEEEEEcC-CCCEEEEEeC-----------------CCeEEEEeCCCCceee
Q 006743           61 TLHLWDTTGRSPKVSWLKQ-----HSAPTAGISFSS-DDKIIASVGL-----------------DKKLYTYDPGSRRPSS  117 (633)
Q Consensus        61 tI~IWDl~t~~~~v~~l~~-----H~~~VtsLafSP-dg~~LaSgS~-----------------DGtVrIWDlrtgk~v~  117 (633)
                      .|.++|..++..  ..+..     .....+.+++.+ +|+++++-..                 ++.|..||..+++...
T Consensus       102 ~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  179 (322)
T 2fp8_A          102 HLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL  179 (322)
T ss_dssp             EEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred             CEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence            688888775432  22211     123578899999 8987766432                 3679999988776544


Q ss_pred             EeeCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          118 CITYEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       118 ~i~h~~~ItsLafSPdG~~LatG-s~DGsV~IWDlrs~~k-~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ..........++|++++++|+++ ..++.|++||+..... ....+..  ..+ ...++++++|.+.++.
T Consensus       180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred             eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence            43333456679999999877665 4568999999875321 1222221  223 7788888877655544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.23  E-value=0.0002  Score=72.44  Aligned_cols=166  Identities=10%  Similarity=0.109  Sum_probs=110.2

Q ss_pred             CCEEEEEECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006743            6 DEHLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (633)
Q Consensus         6 G~~LaSgs~D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~   83 (633)
                      +.++.+.+.+  ..|+++|+++++.+..+.......--.+++  .++++++..-.++.+.+||..+.+. +..+... ..
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~-~~ti~~~-~~  106 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLATLTP-RARFRYP-GE  106 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTTEE-EEEEECS-SC
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECCcCcE-EEEEeCC-CC
Confidence            4444555554  489999999999998887433222122333  3455677777899999999998874 3444322 22


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~------~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      =..++  +++..|+....++.|.++|..+.+.+..+...      ..++.+.|. +|+..+..-.+..|.+.|.+++ +.
T Consensus       107 Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG-~V  182 (243)
T 3mbr_X          107 GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASG-KV  182 (243)
T ss_dssp             CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC-BE
T ss_pred             ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCC-CE
Confidence            24554  45677777777899999999999888777421      345667776 5655544446789999999998 45


Q ss_pred             eEEEeecC-----------CCCCeeEEEEccCC
Q 006743          158 LTVLRACS-----------SSEAVSSLCWQRAK  179 (633)
Q Consensus       158 v~~l~~~~-----------H~~~VtsLafsPdg  179 (633)
                      +..+...+           ......+|+|+|++
T Consensus       183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~  215 (243)
T 3mbr_X          183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEH  215 (243)
T ss_dssp             EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred             EEEEECCcCccccccccCCcCCceEEEEEcCCC
Confidence            55554321           12356889999964

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.21  E-value=2.2e-05  Score=83.98  Aligned_cols=91  Identities=4%  Similarity=-0.035  Sum_probs=68.5

Q ss_pred             cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCCCceeEEeccC-------
Q 006743           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTGRSPKVSWLKQH-------   80 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs---------~DGtI~IWDl~t~~~~v~~l~~H-------   80 (633)
                      +|.++|..+++.+..+..... .  .+.++|+++.++++..         .++.|.+||..+.+. +..+..+       
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCB
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCcccccc
Confidence            888999999999999875443 3  5899999985554442         478999999999885 4444332       


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC--CCeEEE--EeCC
Q 006743           81 SAPTAGISFSSDDKIIASVGL--DKKLYT--YDPG  111 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~--DGtVrI--WDlr  111 (633)
                      ......++++||+++++++..  +..|.+  +|+.
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence            134578999999999998875  356777  8773

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.15  E-value=9.2e-05  Score=80.70  Aligned_cols=144  Identities=6%  Similarity=-0.014  Sum_probs=104.4

Q ss_pred             CCCCEEEEEECC-----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCC
Q 006743            4 CKDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTG   69 (633)
Q Consensus         4 pdG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs---------~DGtI~IWDl~t   69 (633)
                      ++++++++....     +.|.++|..+++.+..+.... ..  .++++|+++.++++..         .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            466777766553     699999999999999887533 23  6899999985555532         477999999998


Q ss_pred             CCceeEEeccC-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCC-CEEEE
Q 006743           70 RSPKVSWLKQH-------SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD-WILTA  139 (633)
Q Consensus        70 ~~~~v~~l~~H-------~~~VtsLafSPdg~~LaSgS~--DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG-~~Lat  139 (633)
                      .+. +..+.-.       ......++|+||+++++++..  ++.|.++|+.+++.+..+...+.   ....|++ ..+++
T Consensus       159 ~~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~  234 (426)
T 3c75_H          159 FLP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYM  234 (426)
T ss_dssp             CCE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEE
T ss_pred             CcE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEE
Confidence            874 3333211       234567899999999999874  57899999999999888764332   2334443 55666


Q ss_pred             EEcCCeEEEEECCCC
Q 006743          140 GTSNGRVVFYDIRGK  154 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~  154 (633)
                      .+.||.+.+.+....
T Consensus       235 ~~~dG~~~~V~~~~~  249 (426)
T 3c75_H          235 NCRDGSLARVDFADG  249 (426)
T ss_dssp             EETTSSEEEEECCTT
T ss_pred             EcCCCCEEEEECCCC
Confidence            777888888888443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.14  E-value=3.6e-07  Score=96.79  Aligned_cols=145  Identities=14%  Similarity=0.071  Sum_probs=77.7

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEE-EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vs-sLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      ..+|..+++++.||.|+.||.++|+.+..+..+....+. ...+. .+. .+++|+.|+.|+.||..+++.. -.+..+.
T Consensus        46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~-w~~~~~~  122 (369)
T 2hz6_A           46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQ-QTLSSAF  122 (369)
T ss_dssp             ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------
T ss_pred             EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEE-EEecCCC
Confidence            345667777789999999999999877665432111111 00111 233 5778888999999999988742 2222222


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCCC
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD---WILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG---~~LatGs~DGsV~IWDlrs~~  155 (633)
                          ...++|++..+++++.|+.|+.||.++++.+..+.... ....++..+.   ..+++++.||.|+.||.++++
T Consensus       123 ----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          123 ----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             --------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             ----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence                23456788899999999999999999998765543111 1222333332   567788999999999999884

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.06  E-value=1.2e-05  Score=90.88  Aligned_cols=178  Identities=10%  Similarity=-0.000  Sum_probs=117.4

Q ss_pred             CCCCEEEEEE------------------CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-----
Q 006743            4 CKDEHLASIS------------------LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----   60 (633)
Q Consensus         4 pdG~~LaSgs------------------~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG-----   60 (633)
                      |+++++++++                  .++.|.++|.++.+.+..+....  ....++++|+|+ ++++.+.+.     
T Consensus       145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk-~~~vt~~~se~~~~  221 (595)
T 1fwx_A          145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGK-WAFSTSYNSEKGMT  221 (595)
T ss_dssp             SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSS-EEEEEESCTTCCSS
T ss_pred             CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCC-EEEEEecCcccCcc
Confidence            8899998884                  24579999999998888876322  234478899998 455544332     


Q ss_pred             ---------------------------------eEEEEECCC--CCceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe
Q 006743           61 ---------------------------------TLHLWDTTG--RSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKK  104 (633)
Q Consensus        61 ---------------------------------tI~IWDl~t--~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGt  104 (633)
                                                       .|.|.|..+  +...+..+.. .....++.++|||+++++++ .+.+
T Consensus       222 i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~  300 (595)
T 1fwx_A          222 LPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT  300 (595)
T ss_dssp             HHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB
T ss_pred             hhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe
Confidence                                             366667665  3321223322 23567899999999887766 5679


Q ss_pred             EEEEeCCCCc------------eeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---------CCceEEEee
Q 006743          105 LYTYDPGSRR------------PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---------PQPLTVLRA  163 (633)
Q Consensus       105 VrIWDlrtgk------------~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~---------~k~v~~l~~  163 (633)
                      |.++|+.+.+            .+..+........++|+|+|...++..-|+.|.+||+...         .+.+..+. 
T Consensus       301 VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid-  379 (595)
T 1fwx_A          301 VTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-  379 (595)
T ss_dssp             EEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-
T ss_pred             EEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee-
Confidence            9999998653            3344456778999999999943445566999999998761         23344444 


Q ss_pred             cCCCCCe-----eEEEEccCCCeEEEecc
Q 006743          164 CSSSEAV-----SSLCWQRAKPVFIDETT  187 (633)
Q Consensus       164 ~~H~~~V-----tsLafsPdg~~Las~s~  187 (633)
                       .|..+-     .++.++|||++|++...
T Consensus       380 -V~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          380 -VHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             -CSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             -cccccccceeccceEeCCCCCEEEEcCC
Confidence             232221     22345788888776643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.01  E-value=0.00039  Score=70.99  Aligned_cols=188  Identities=14%  Similarity=0.133  Sum_probs=111.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC----CCCCcEEEEEEcc-CCCeEEEEEeC-----------------C
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD----PNEQVLRVLDYSR-NSRHLLVTAGD-----------------D   59 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~----~~~~~VssLafSp-dg~~lLaSGs~-----------------D   59 (633)
                      +.+++..|+++...+.|..+|..+++ +..+..    ........+++.+ +|. ++++-..                 +
T Consensus        87 ~~~~~g~l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~  164 (322)
T 2fp8_A           87 YNLQNNQLYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKT  164 (322)
T ss_dssp             EETTTTEEEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred             EcCCCCcEEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCC
Confidence            34433455666555668888876543 222221    1123467799999 886 5554322                 3


Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc--eeeEe-eCCCCeEEEEEecCCC
Q 006743           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRR--PSSCI-TYEAPFSSLAFIDDDW  135 (633)
Q Consensus        60 GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSg-S~DGtVrIWDlrtgk--~v~~i-~h~~~ItsLafSPdG~  135 (633)
                      +.|..||..+...  ..+.......+.|+|++++++|+.+ ..++.|++||+....  ....+ ...+ ...++++++|+
T Consensus       165 g~v~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          165 GRLIKYDPSTKET--TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH  241 (322)
T ss_dssp             EEEEEEETTTTEE--EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred             ceEEEEeCCCCEE--EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence            6788898876652  2222222445789999999866655 556899999987532  11122 2334 88899999998


Q ss_pred             EEEEEEc----------CCeEEEEECCCCCCceEEEeecC-C-CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeE
Q 006743          136 ILTAGTS----------NGRVVFYDIRGKPQPLTVLRACS-S-SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI  203 (633)
Q Consensus       136 ~LatGs~----------DGsV~IWDlrs~~k~v~~l~~~~-H-~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~I  203 (633)
                      +.++...          .+.|..+|...  +.+..+.... . -..++++++.             ++.++++....+.|
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~G--~~~~~~~~~~g~~~~~~~~~~~~-------------~g~L~v~~~~~~~i  306 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEFG--NILEVIPLPPPFAGEHFEQIQEH-------------DGLLYIGTLFHGSV  306 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTTS--CEEEEEECCTTTTTSCCCEEEEE-------------TTEEEEECSSCSEE
T ss_pred             EEEEecCcccccccCCCccEEEEECCCC--CEEEEEECCCCCccccceEEEEe-------------CCEEEEeecCCCce
Confidence            7666544          46788888753  3334444221 0 1234555441             45666766677888


Q ss_pred             EccCCC
Q 006743          204 LMPDPL  209 (633)
Q Consensus       204 kIWDlr  209 (633)
                      .++++.
T Consensus       307 ~~~~~~  312 (322)
T 2fp8_A          307 GILVYD  312 (322)
T ss_dssp             EEEEC-
T ss_pred             EEEecc
Confidence            888764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.97  E-value=0.00018  Score=82.50  Aligned_cols=195  Identities=9%  Similarity=0.094  Sum_probs=120.9

Q ss_pred             CCEEEEEEC------CCcEEEEECCCCceeEEEeCCCCC-------------------------------cEEEEEEccC
Q 006743            6 DEHLASISL------SGDLILHNLASGAKAAELKDPNEQ-------------------------------VLRVLDYSRN   48 (633)
Q Consensus         6 G~~LaSgs~------DG~I~IWDl~tgk~v~~~~~~~~~-------------------------------~VssLafSpd   48 (633)
                      +..+++++.      +|.|+.||..+|+.+-.+......                               ....+.+.++
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            445565553      689999999999998777532111                               1124678888


Q ss_pred             CCeEEEEEeCCC-------------------eEEEEECCCCCceeEE-eccCC-------CCeEEEEEcCCC---CEEEE
Q 006743           49 SRHLLVTAGDDG-------------------TLHLWDTTGRSPKVSW-LKQHS-------APTAGISFSSDD---KIIAS   98 (633)
Q Consensus        49 g~~lLaSGs~DG-------------------tI~IWDl~t~~~~v~~-l~~H~-------~~VtsLafSPdg---~~LaS   98 (633)
                      +. +++.+..++                   .|..+|..+++..-+. ...|.       .....+....+|   ..++.
T Consensus       254 ~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~  332 (677)
T 1kb0_A          254 LN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH  332 (677)
T ss_dssp             TT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred             CC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence            77 677666554                   5999999988843221 11221       122223333467   68999


Q ss_pred             EeCCCeEEEEeCCCCceeeEeeCC-----------CC-e------------------------EEEEEecCCCEEEEEEc
Q 006743           99 VGLDKKLYTYDPGSRRPSSCITYE-----------AP-F------------------------SSLAFIDDDWILTAGTS  142 (633)
Q Consensus        99 gS~DGtVrIWDlrtgk~v~~i~h~-----------~~-I------------------------tsLafSPdG~~LatGs~  142 (633)
                      ++.+|.|+++|.++++.+..+...           +. +                        ..++++|++.++++...
T Consensus       333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~  412 (677)
T 1kb0_A          333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ  412 (677)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred             ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence            999999999999999987655311           00 1                        15688998888877643


Q ss_pred             C-------------------------------------------CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 006743          143 N-------------------------------------------GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (633)
Q Consensus       143 D-------------------------------------------GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg  179 (633)
                      +                                           |.|+.||+.+++.. ..+.   +..++.+..+... 
T Consensus       413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~-W~~~---~~~~~~~g~~~~~-  487 (677)
T 1kb0_A          413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA-WSVE---HVSPWNGGTLTTA-  487 (677)
T ss_dssp             ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE-EEEE---ESSSCCCCEEEET-
T ss_pred             hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE-eecC---CCCCCcCcceEeC-
Confidence            2                                           67999999887422 2222   2222222222221 


Q ss_pred             CeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       180 ~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                                ++ +++.++.|+.+++||...-......
T Consensus       488 ----------g~-~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          488 ----------GN-VVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             ----------TT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ----------CC-EEEEECCCCcEEEEECCCCceeeee
Confidence                      33 3444577999999999765554443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.96  E-value=0.00061  Score=69.66  Aligned_cols=170  Identities=12%  Similarity=0.027  Sum_probs=104.6

Q ss_pred             ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEE-EeCC
Q 006743           27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIAS-VGLD  102 (633)
Q Consensus        27 k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~--DGtI~IWDl~t~~~~v~~l~-~H~~~VtsLafSPdg~~LaS-gS~D  102 (633)
                      +.+.++..........+.|++++. ++++.+.  ++.|.++|+.+++.. ..+. ........+++.  ++.|+. .-.+
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~-~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVE-NIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEE-EEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEE-EEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            455666532223457899999864 5555543  689999999998843 3332 222233456665  445544 4467


Q ss_pred             CeEEEEeCCCCceeeEeeCC-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccC
Q 006743          103 KKLYTYDPGSRRPSSCITYE-APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRA  178 (633)
Q Consensus       103 GtVrIWDlrtgk~v~~i~h~-~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafsPd  178 (633)
                      +.+.++|..+.+.+..+... ..-  ..+++||+.++++..++.|+++|..+.+ ....+....+..   .+..+.|. +
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CEEEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEECCCCcccccceeEEEE-C
Confidence            89999999999998888654 332  3455688888888888999999998873 334433211111   24566665 3


Q ss_pred             CCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743          179 KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (633)
Q Consensus       179 g~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss  216 (633)
                      +            .+++....++.|.+.|+........
T Consensus       162 g------------~lyvn~~~~~~V~vID~~tg~V~~~  187 (266)
T 2iwa_A          162 G------------EVWANIWQTDCIARISAKDGTLLGW  187 (266)
T ss_dssp             T------------EEEEEETTSSEEEEEETTTCCEEEE
T ss_pred             C------------EEEEecCCCCeEEEEECCCCcEEEE
Confidence            3            3333334456666666655444333

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.96  E-value=0.0005  Score=70.37  Aligned_cols=142  Identities=12%  Similarity=0.123  Sum_probs=93.6

Q ss_pred             eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 006743           28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT  107 (633)
Q Consensus        28 ~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI  107 (633)
                      .+.++......-...+.|..  ..++++.+.+|.|+++|+.+++..... ......-..+++. .+++++..-.++.+.+
T Consensus        45 Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEE
T ss_pred             EEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEE
Confidence            44556432344557788873  458888899999999999998854433 2221122345554 2344455557889999


Q ss_pred             EeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEc
Q 006743          108 YDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQ  176 (633)
Q Consensus       108 WDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafs  176 (633)
                      ||..+.+.+..+.....-..++  +|++.|+.+..++.|+++|..+.+ .+..+....+..   .+..+.|.
T Consensus       121 ~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             EETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE
T ss_pred             EECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccEEe
Confidence            9999999999887655444555  568888888889999999999873 344444222222   23556665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.94  E-value=0.00042  Score=80.24  Aligned_cols=149  Identities=7%  Similarity=0.012  Sum_probs=91.7

Q ss_pred             Ccc-CCCCEEEEEEC-CC----cEEEEECCCC-ceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeCC----CeEEEEECC
Q 006743            1 MYN-CKDEHLASISL-SG----DLILHNLASG-AKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDD----GTLHLWDTT   68 (633)
Q Consensus         1 AFS-pdG~~LaSgs~-DG----~I~IWDl~tg-k~v~~-~~~~~~~~VssLafSpdg~~lLaSGs~D----GtI~IWDl~   68 (633)
                      +|+ |||++||.+.. +|    .|+++|+.++ +.+.. +.    .....++|+||++.++++...+    ..|+++++.
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg  255 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG  255 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence            378 99998886543 33    4999999988 63211 11    1223578999998555554332    368888887


Q ss_pred             CCCce-eEEec-cCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCC--ce--eeEee-CCCCeEEEEEecCCCEEE
Q 006743           69 GRSPK-VSWLK-QHSAPTAGISFSSDDKIIASVGL---DKKLYTYDPGSR--RP--SSCIT-YEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        69 t~~~~-v~~l~-~H~~~VtsLafSPdg~~LaSgS~---DGtVrIWDlrtg--k~--v~~i~-h~~~ItsLafSPdG~~La  138 (633)
                      +.... ...+. ........+.|+||+++|+....   ...|+++|+.++  +.  ..... .......+.|+..+.+++
T Consensus       256 t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~  335 (751)
T 2xe4_A          256 KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVI  335 (751)
T ss_dssp             SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEE
T ss_pred             CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEE
Confidence            65422 22222 23345678899999999887663   347899999875  23  22222 344556666654444444


Q ss_pred             EEEcC----CeEEEEECCC
Q 006743          139 AGTSN----GRVVFYDIRG  153 (633)
Q Consensus       139 tGs~D----GsV~IWDlrs  153 (633)
                      ....+    ..|+.+|+.+
T Consensus       336 ~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          336 LTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EECTTTCTTCEEEEEETTS
T ss_pred             EeCCCCCCCcEEEEEcCCC
Confidence            44443    3677788764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.94  E-value=0.0045  Score=63.68  Aligned_cols=185  Identities=8%  Similarity=-0.057  Sum_probs=116.2

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---CceeEEeccCCCCe
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR---SPKVSWLKQHSAPT   84 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~---~~~v~~l~~H~~~V   84 (633)
                      +|+.+ ....|+..|+...+....+.  .......++|.+.+..++++-..++.|+.+++.+.   ......+...-...
T Consensus         3 ~ll~~-~~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFT-NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEE-CBSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEE-CCCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            34444 34679999998776555444  23445679999877657777777899999999761   21122333333456


Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEc-C-CeEEEEECCCCCCceEE
Q 006743           85 AGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS-N-GRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        85 tsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~-D-GsV~IWDlrs~~k~v~~  160 (633)
                      ..+++.+. ++++++-..++.|.++|+........+. .......++++|.+..|+.... . +.|..+++....  ...
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~  157 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYS  157 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEE
Confidence            88999874 4455555677899999987554433333 3467899999997666655554 3 789999987642  122


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      +.. ..-.....++|++++..           ++++....+.|..+|+.
T Consensus       158 ~~~-~~~~~P~gla~d~~~~~-----------lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          158 LVT-ENIQWPNGITLDLLSGR-----------LYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             EEC-SSCSCEEEEEEETTTTE-----------EEEEETTTTEEEEEETT
T ss_pred             EEE-CCCCCceEEEEeccCCE-----------EEEEECCCCeEEEEecC
Confidence            221 23356789999986443           34444445666666653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.94  E-value=0.00095  Score=69.25  Aligned_cols=143  Identities=11%  Similarity=0.056  Sum_probs=95.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCC--------CCcEEE-EEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPN--------EQVLRV-LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~--------~~~Vss-LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      ++..|++++.++.|..+|.++++.+..+....        ...+.. +..  ++. .++.++.++.|+.+|..+++..- 
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~v~~~~g~l~a~d~~tG~~~W-  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGG-HVYIGSEKAQVYALNTSDGTVAW-  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETT-EEEEEETTSEEEEEETTTCCEEE-
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCC-EEEEEcCCCEEEEEECCCCCEEE-
Confidence            36678888889999999999999887665421        122322 222  233 57788899999999999887421 


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCe------EEEEEecCCCEEEEEEcCCeEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPF------SSLAFIDDDWILTAGTSNGRVVFY  149 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~I------tsLafSPdG~~LatGs~DGsV~IW  149 (633)
                      ..............  .+..++.++.++.|..+|.++++.+........+      ......  +..++++..++.|+.+
T Consensus       128 ~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             EEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred             EEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence            12222111111122  2557888999999999999999987766543332      122222  4578888899999999


Q ss_pred             ECCCCC
Q 006743          150 DIRGKP  155 (633)
Q Consensus       150 Dlrs~~  155 (633)
                      |.++++
T Consensus       204 d~~tG~  209 (376)
T 3q7m_A          204 LMEQGQ  209 (376)
T ss_dssp             ETTTCC
T ss_pred             ECCCCc
Confidence            999874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.90  E-value=0.00031  Score=70.61  Aligned_cols=136  Identities=15%  Similarity=0.140  Sum_probs=94.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt   85 (633)
                      +..|.+++.++.|..+|.. ++....+.. ....+.++...+++.  ++.++.++.|..||.. ++. ..........+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~-~~~~~~~~~~~~  180 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT-KKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTE-KWRFKTNDAITS  180 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCE-EEEEECSSCCCS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC-CCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCE-eEEEecCCCcee
Confidence            4567778889999999987 777666553 333445566666665  6778888999999998 542 333334455677


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ++.+.+++.+++ ++  +.|..|| .+++...... ....+.++...++|. |.+++.++.|+.+|..
T Consensus       181 ~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~  243 (330)
T 3hxj_A          181 AASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD  243 (330)
T ss_dssp             CCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT
T ss_pred             eeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC
Confidence            788877777544 44  7799999 6766655443 345678888887774 5667778889888753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.88  E-value=0.00042  Score=79.62  Aligned_cols=102  Identities=12%  Similarity=0.105  Sum_probs=68.3

Q ss_pred             CCcEEEEECCCCceeEEEeCCC------------------------------CCcEEEEEEccCCCeEEEEEeCCCe---
Q 006743           15 SGDLILHNLASGAKAAELKDPN------------------------------EQVLRVLDYSRNSRHLLVTAGDDGT---   61 (633)
Q Consensus        15 DG~I~IWDl~tgk~v~~~~~~~------------------------------~~~VssLafSpdg~~lLaSGs~DGt---   61 (633)
                      +|.|+.||..+|+.+-.+....                              ......+.+.++.. +++.+..++.   
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~  260 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWD  260 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccc
Confidence            6899999999999887765210                              01112467888776 6778877764   


Q ss_pred             ----------------EEEEECCCCCceeEEec-cCC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCc
Q 006743           62 ----------------LHLWDTTGRSPKVSWLK-QHS-------APTAGISFSSDDK---IIASVGLDKKLYTYDPGSRR  114 (633)
Q Consensus        62 ----------------I~IWDl~t~~~~v~~l~-~H~-------~~VtsLafSPdg~---~LaSgS~DGtVrIWDlrtgk  114 (633)
                                      |..||..+++..-+.-. .|.       ..+.......+++   .++.++.+|.|+++|.++++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                            99999999884322111 121       1222222222554   78899999999999999999


Q ss_pred             eee
Q 006743          115 PSS  117 (633)
Q Consensus       115 ~v~  117 (633)
                      .+.
T Consensus       341 ~l~  343 (689)
T 1yiq_A          341 LLS  343 (689)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.88  E-value=0.0024  Score=64.85  Aligned_cols=181  Identities=10%  Similarity=0.140  Sum_probs=116.0

Q ss_pred             CccCCCCEEE-EEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEe
Q 006743            1 MYNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWL   77 (633)
Q Consensus         1 AFSpdG~~La-Sgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--~v~~l   77 (633)
                      +|+|+++.|+ +...++.|...|.. ++.+..+.-....-...|++.+++. ++++.-.++.+.++++.....  .+...
T Consensus        33 a~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~  110 (255)
T 3qqz_A           33 TWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTPNSEVKILKKI  110 (255)
T ss_dssp             EEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCCCCeeeeeeee
Confidence            4778776555 46778899999987 8888877532224466788888775 556655778999999865442  11111


Q ss_pred             ------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeeEee--------CCCCeEEEEEecC-CCEEEE
Q 006743           78 ------KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG---SRRPSSCIT--------YEAPFSSLAFIDD-DWILTA  139 (633)
Q Consensus        78 ------~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr---tgk~v~~i~--------h~~~ItsLafSPd-G~~Lat  139 (633)
                            ...+.....|+|+|.++.|+++.+.....+|.+.   ....+....        .-..+.+++++|. +++++.
T Consensus       111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliL  190 (255)
T 3qqz_A          111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVL  190 (255)
T ss_dssp             ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEE
T ss_pred             ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEE
Confidence                  1234557999999988777777665544444432   111122221        2345789999995 566667


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecC-C------CCCeeEEEEccCCCeEEEe
Q 006743          140 GTSNGRVVFYDIRGKPQPLTVLRACS-S------SEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v~~l~~~~-H------~~~VtsLafsPdg~~Las~  185 (633)
                      ....+.|.++|....  ++..+.... .      -..-..|+|+++|+..+++
T Consensus       191 S~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          191 SHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             ETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             ECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            777888999998754  444444321 1      1256889999987655543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.87  E-value=0.00041  Score=70.84  Aligned_cols=128  Identities=13%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe
Q 006743           28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKK  104 (633)
Q Consensus        28 ~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGt  104 (633)
                      .+.++......-...+.|+ ++ .++.+.+.+|  .|+++|+.+++.. ..+.- ..........++++.|+... .++.
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~-~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTL-QQIEL-GKRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEE-EEEEC-CTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEE-EEEec-CCccceeEEEEeCCEEEEEEeeCCE
Confidence            4556653334556788998 55 4777777776  8999999998843 33322 23333322333345555554 5889


Q ss_pred             EEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743          105 LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (633)
Q Consensus       105 VrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~  162 (633)
                      +.+||..+.+.+..+.....-..++  +|++.|+....++.|+++|..+.+ ....+.
T Consensus       109 v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~  163 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLT-PVRTIT  163 (262)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCS-EEEEEE
T ss_pred             EEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCe-EEEEEE
Confidence            9999999999999887654334444  567888877778899999999873 344443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.85  E-value=0.012  Score=60.44  Aligned_cols=173  Identities=11%  Similarity=-0.038  Sum_probs=103.6

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCC---CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~t---gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      |+++++.|+.+. .++.|..+++..   +.....+..........+++.+.+.+++++-...+.|.++|..+... ...+
T Consensus        37 ~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~  115 (316)
T 1ijq_A           37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF  115 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEE
T ss_pred             EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEE
Confidence            566666666554 457888888765   12222222112223456888876665677767789999999986552 2223


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGL-D-KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRG  153 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~-D-GtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs  153 (633)
                      .........+++.|.+..|+.+.. . +.|..+++......... ..-.....+++++++..|..+. ..+.|..+|+..
T Consensus       116 ~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          116 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            334457899999996555555543 3 68999988643322222 2345688999999877776655 567899999986


Q ss_pred             CCCceEEEeecCCCCCeeEEEEc
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQ  176 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafs  176 (633)
                      ... ..............++++.
T Consensus       196 ~~~-~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          196 GNR-KTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             CSC-EEEEECTTTTSSEEEEEEE
T ss_pred             Cce-EEEeecCCccCCcEEEEEE
Confidence            422 2222211122345666664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.84  E-value=0.0043  Score=62.98  Aligned_cols=175  Identities=8%  Similarity=0.018  Sum_probs=101.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC-C-CeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-D-GTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~-D-GtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+++|+.+++-..++.|..||... +....+..  ......+++.++++ ++++... + ..|..+|..+++.....-.
T Consensus        38 a~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~--~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~  113 (306)
T 2p4o_A           38 ASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV--EGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL  113 (306)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC--SSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC--CCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeC
Confidence            4678888666655788999999754 44433432  34677899999998 5555433 2 2577777766653211111


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeEe----------eCCCCeEEEEEecCCCEEEEEE-cCCeE
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI----------TYEAPFSSLAFIDDDWILTAGT-SNGRV  146 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~-v~~i----------~h~~~ItsLafSPdG~~LatGs-~DGsV  146 (633)
                      ........++..+++..+++-..++.|+++|...++. +...          ..-.....+  ++++++|+++. ..+.|
T Consensus       114 ~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I  191 (306)
T 2p4o_A          114 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLL  191 (306)
T ss_dssp             TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEE
T ss_pred             CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEE
Confidence            2223345666655555455544688999999876532 1110          111234555  78887766555 56889


Q ss_pred             EEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743          147 VFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       147 ~IWDlrs~~k--~v~~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                      +.||+.....  ....+..   ......++++++|++.++
T Consensus       192 ~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          192 LRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             EEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEE
T ss_pred             EEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEE
Confidence            9999875211  1122221   134566778876655444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.81  E-value=0.0007  Score=70.23  Aligned_cols=140  Identities=10%  Similarity=0.059  Sum_probs=95.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCc---------E-EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQV---------L-RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~---------V-ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      +..++++..+|.|..+|..+++.+..+.......         + .....  .+. .++.++.++.|..+|..+++..  
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~-~v~~~~~~g~l~~~d~~tG~~~--  262 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNG-VVFALAYNGNLTALDLRSGQIM--  262 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETT-EEEEECTTSCEEEEETTTCCEE--
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECC-EEEEEecCcEEEEEECCCCcEE--
Confidence            4567778889999999999999887765321100         0 00111  123 5778888999999999888732  


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-C-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-Y-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs  153 (633)
                      +.. .......+..  ++..++.++.++.|..+|..+++.+.... . ...+.....  .+..|++++.+|.|++||.++
T Consensus       263 w~~-~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          263 WKR-ELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             EEE-CCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             eec-cCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence            222 2233445444  46788888999999999999998776553 1 222333333  257889999999999999998


Q ss_pred             CC
Q 006743          154 KP  155 (633)
Q Consensus       154 ~~  155 (633)
                      ++
T Consensus       338 G~  339 (376)
T 3q7m_A          338 GR  339 (376)
T ss_dssp             CC
T ss_pred             Cc
Confidence            74

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.79  E-value=0.0009  Score=75.21  Aligned_cols=139  Identities=12%  Similarity=0.064  Sum_probs=93.6

Q ss_pred             cEEEEECCCCceeEEEeCCC---------CCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeEEeccC-----
Q 006743           17 DLILHNLASGAKAAELKDPN---------EQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-----   80 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~---------~~~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H-----   80 (633)
                      .|..+|..+|+.+-.++..+         ...+. +....+|+  .+++.++.+|.++++|..+++..-..-...     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            59999999999988776421         12221 22224563  367788999999999998887432221111     


Q ss_pred             -------CCCe--------------------------EEEEEcCCCCEEEEEe---------------------------
Q 006743           81 -------SAPT--------------------------AGISFSSDDKIIASVG---------------------------  100 (633)
Q Consensus        81 -------~~~V--------------------------tsLafSPdg~~LaSgS---------------------------  100 (633)
                             ..+|                          ..++++|+..+|++..                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                   0111                          2357788777776653                           


Q ss_pred             ----------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743          101 ----------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus       101 ----------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                                .++.|..||+.+++.+..+.....+....+...+..|++++.||.|+.||.++++.
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                      34789999999999887776554444433444567888899999999999999853

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.77  E-value=0.003  Score=67.11  Aligned_cols=192  Identities=12%  Similarity=0.158  Sum_probs=123.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC----CCe--EEEEEeC---CCeEEEEECCCCCceeEE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN----SRH--LLVTAGD---DGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd----g~~--lLaSGs~---DGtI~IWDl~t~~~~v~~   76 (633)
                      ..+++...+++-|.+||+ +|+.+..+..   ..++.|..-|.    ++.  ++++...   +++|.+|++......+..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            445666677889999999 8999988864   34555555442    221  2334443   589999988422212444


Q ss_pred             ecc------CC-CCeEEEEE--cC-CCC-EEEEEeCCCeEEEEeCC-------CCceeeEeeCCCCeEEEEEecCCCEEE
Q 006743           77 LKQ------HS-APTAGISF--SS-DDK-IIASVGLDKKLYTYDPG-------SRRPSSCITYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        77 l~~------H~-~~VtsLaf--SP-dg~-~LaSgS~DGtVrIWDlr-------tgk~v~~i~h~~~ItsLafSPdG~~La  138 (633)
                      +..      .. ..++.+|+  +| .+. ++++...+|.+..|++.       +.+.++.+.....+..|..++....|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            421      12 56788888  77 454 68888889999999883       335567777788999999999999999


Q ss_pred             EEEcCCeEEEEECCCCC-CceEEEeec--CC-CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          139 AGTSNGRVVFYDIRGKP-QPLTVLRAC--SS-SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~-k~v~~l~~~--~H-~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ++-++.-|..||.+-.. .....+...  ++ ...+..|++.+.        ....+.+++++-.++.+.+||..
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~--------~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA--------ADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC--------GGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec--------CCCCEEEEEEcCCCCEEEEEECC
Confidence            99999778777855221 011222221  22 235777776431        01122355555568899999885

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.74  E-value=0.0033  Score=63.87  Aligned_cols=178  Identities=11%  Similarity=0.071  Sum_probs=102.6

Q ss_pred             CccCCCCEEEEEECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-
Q 006743            1 MYNCKDEHLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL-   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l-   77 (633)
                      ++.++|+++++....  ..|..+|..+++...............++..+.+ ..+++-..++.|+++|..+....+... 
T Consensus        78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~  156 (306)
T 2p4o_A           78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEH  156 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence            367888865544332  2477778777765433332222333445554444 345554468999999986542112110 


Q ss_pred             --------ccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCC-Cce--eeEeeCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           78 --------KQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGS-RRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        78 --------~~H~~~VtsLafSPdg~~LaSg-S~DGtVrIWDlrt-gk~--v~~i~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                              ...-...+.|  +++++.|+.+ ...+.|+.||+.. ++.  ...+........++++++|++.++....+.
T Consensus       157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~  234 (306)
T 2p4o_A          157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS  234 (306)
T ss_dssp             GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC
T ss_pred             CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCe
Confidence                    0111245566  7777766555 4567999999874 332  122222245677899999988777777889


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEc---cCCCeEE
Q 006743          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ---RAKPVFI  183 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafs---Pdg~~La  183 (633)
                      |.+||....  ..............++++|.   |++..|+
T Consensus       235 V~~~~~~G~--~~~~~~~~~~~~~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          235 VVRIAPDRS--TTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             EEEECTTCC--EEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             EEEECCCCC--EEEEeecccccCCceEEEEecccCCCCEEE
Confidence            999997632  21111211223568899998   6654443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.74  E-value=0.0078  Score=63.87  Aligned_cols=179  Identities=9%  Similarity=-0.037  Sum_probs=115.4

Q ss_pred             CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-C
Q 006743           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-D   92 (633)
Q Consensus        14 ~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-d   92 (633)
                      ....|+.+++........+.  .......++|.+.+..++++-...+.|+.++..+... ...+.........+++.+ .
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~~~~~p~glavd~~~  170 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVSTGLESPGGLAVDWVH  170 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEECSSCSCCCCEEEETTT
T ss_pred             cCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEEeCCCCCccEEEEEeCC
Confidence            45678888886655444333  2334667999987765777766788999999987652 233333334567889987 4


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEE-cC-CeEEEEECCCCCCceEEEeecCCCCC
Q 006743           93 DKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SN-GRVVFYDIRGKPQPLTVLRACSSSEA  169 (633)
Q Consensus        93 g~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs-~D-GsV~IWDlrs~~k~v~~l~~~~H~~~  169 (633)
                      ++++++-...+.|.++++........+. .-.....++++|.+..|+... .+ +.|+.+++..... .....  ..-..
T Consensus       171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~--~~~~~  247 (386)
T 3v65_B          171 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD--THLFW  247 (386)
T ss_dssp             TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC--SSCSC
T ss_pred             CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEE--CCCCC
Confidence            5555565667789999987554333333 336689999999766666554 34 7899999876532 12222  22345


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       170 VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ...|+|+|++           +.++++-...+.|..+|+.
T Consensus       248 PnGlavd~~~-----------~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          248 PNGLTIDYAG-----------RRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             EEEEEEEGGG-----------TEEEEEETTTTEEEEECTT
T ss_pred             eeeEEEeCCC-----------CEEEEEECCCCEEEEEeCC
Confidence            7889999753           3444555556677777763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.73  E-value=0.00068  Score=68.08  Aligned_cols=175  Identities=13%  Similarity=0.054  Sum_probs=107.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V   84 (633)
                      +|. |..++.++.|..||.. ++.+..+.. ....+.++...+++.  ++.++  +.|..|| .+++. ..........+
T Consensus       147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~--l~v~t--~~l~~~d-~~g~~-~~~~~~~~~~~  217 (330)
T 3hxj_A          147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGT--IYFGS--DKVYAIN-PDGTE-KWNFYAGYWTV  217 (330)
T ss_dssp             TSC-EEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCC--EEEES--SSEEEEC-TTSCE-EEEECCSSCCC
T ss_pred             CCE-EEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCE--EEEEe--CEEEEEC-CCCcE-EEEEccCCcce
Confidence            444 6668888999999988 777766654 334455566766775  44555  8899999 55442 33334445668


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (633)
Q Consensus        85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~  163 (633)
                      .++...+++. |+.++.++.|..+|. +++.+..+. ....+.++.+.+++ .|.+++.+|.|+.+|. ++ +....+. 
T Consensus       218 ~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~-  291 (330)
T 3hxj_A          218 TRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFE-  291 (330)
T ss_dssp             SCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEE-
T ss_pred             eceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEE-
Confidence            8888887765 556677788888885 455554443 23334445555455 5677888889999996 43 2223232 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                       .....+.++..++++            .+ +.++.+|.+++...
T Consensus       292 -~~~~~~~~~~~d~~g------------~l-~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          292 -TGSWIIATPVIDENG------------TI-YFGTRNGKFYALFN  322 (330)
T ss_dssp             -CSSCCCSCCEECTTC------------CE-EEECTTSCEEEEEC
T ss_pred             -cCCccccceEEcCCC------------EE-EEEcCCCeEEEEec
Confidence             223445555554433            33 33445777766544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.71  E-value=0.00076  Score=77.16  Aligned_cols=154  Identities=14%  Similarity=0.208  Sum_probs=103.5

Q ss_pred             ccCCCCEEEEEECCC-------------------cEEEEECCCCceeEEEeCC-CC-------CcEEEEEEccCCC--eE
Q 006743            2 YNCKDEHLASISLSG-------------------DLILHNLASGAKAAELKDP-NE-------QVLRVLDYSRNSR--HL   52 (633)
Q Consensus         2 FSpdG~~LaSgs~DG-------------------~I~IWDl~tgk~v~~~~~~-~~-------~~VssLafSpdg~--~l   52 (633)
                      |.++++.++.+..++                   .|..+|..+|+.+-.++.. +.       .......+..+++  .+
T Consensus       237 ~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~  316 (668)
T 1kv9_A          237 YDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKV  316 (668)
T ss_dssp             EETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEE
Confidence            455677888887665                   3999999999998887742 21       1122122333453  36


Q ss_pred             EEEEeCCCeEEEEECCCCCceeEEeccC-----------CCCe------------------------EEEEEcCCCCEEE
Q 006743           53 LVTAGDDGTLHLWDTTGRSPKVSWLKQH-----------SAPT------------------------AGISFSSDDKIIA   97 (633)
Q Consensus        53 LaSGs~DGtI~IWDl~t~~~~v~~l~~H-----------~~~V------------------------tsLafSPdg~~La   97 (633)
                      ++.++.+|.++++|..+++.....-...           ..++                        ..++++|+..+++
T Consensus       317 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~y  396 (668)
T 1kv9_A          317 LMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVY  396 (668)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred             EEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEE
Confidence            8889999999999999887431110000           0000                        1257777666655


Q ss_pred             EEe------------------------------------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743           98 SVG------------------------------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        98 SgS------------------------------------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs  141 (633)
                      ...                                    .+|.|+.||+.+++.+.............+...+.+|++++
T Consensus       397 v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~  476 (668)
T 1kv9_A          397 IPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT  476 (668)
T ss_dssp             EEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC
T ss_pred             EeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC
Confidence            421                                    34789999999999887766555554445556788999999


Q ss_pred             cCCeEEEEECCCCC
Q 006743          142 SNGRVVFYDIRGKP  155 (633)
Q Consensus       142 ~DGsV~IWDlrs~~  155 (633)
                      .||.|++||.++++
T Consensus       477 ~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          477 AAGQMHAYSADKGE  490 (668)
T ss_dssp             TTSEEEEEETTTCC
T ss_pred             CcccchhhhhhcCh
Confidence            99999999999884

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.67  E-value=0.0028  Score=63.97  Aligned_cols=128  Identities=18%  Similarity=0.192  Sum_probs=85.9

Q ss_pred             ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCe--EEEEEcCCCCEEEEEeCC
Q 006743           27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPT--AGISFSSDDKIIASVGLD  102 (633)
Q Consensus        27 k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~l~~H~~~V--tsLafSPdg~~LaSgS~D  102 (633)
                      +.+.++......-+..+.|+. + .++.+.+.+|  .|+++|+.+++.. ..+.- ....  ..+++. .+++++..-.+
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~-~~~~l-~~~~fgeGi~~~-~~~ly~ltw~~   84 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRIL-QRAEV-PPPYFGAGIVAW-RDRLIQLTWRN   84 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEE-EEEEC-CTTCCEEEEEEE-TTEEEEEESSS
T ss_pred             EEEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEE-EEEeC-CCCcceeEEEEe-CCEEEEEEeeC
Confidence            345666533345677899986 3 4777777754  8999999998843 33222 2223  334443 33444445568


Q ss_pred             CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743          103 KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (633)
Q Consensus       103 GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~  162 (633)
                      +.+.+||..+.+.+..+.....-..++  +++..|+.+..++.|+++|..+.+ ....+.
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~  141 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIK  141 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCC-EEEEEE
T ss_pred             CEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCe-EEEEEE
Confidence            899999999999999987655545555  567778877889999999999873 344444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.65  E-value=0.0029  Score=71.33  Aligned_cols=140  Identities=14%  Similarity=0.190  Sum_probs=90.3

Q ss_pred             CcEEEEECCCCceeEEEeCC-CC--------CcEEEEEEc-cCCC--eEEEEEeCCCeEEEEECCCCCceeEEeccC---
Q 006743           16 GDLILHNLASGAKAAELKDP-NE--------QVLRVLDYS-RNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWLKQH---   80 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~-~~--------~~VssLafS-pdg~--~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H---   80 (633)
                      +.|..+|..+|+.+-.++.. +.        ..+. +... .+|+  .+++.++.+|.++++|..+++..-..-...   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            58999999999999887642 21        1221 2221 3553  378889999999999998887432211111   


Q ss_pred             ---------CCCe--------------------------------EEEEEcCCCCEEEEEe-------------------
Q 006743           81 ---------SAPT--------------------------------AGISFSSDDKIIASVG-------------------  100 (633)
Q Consensus        81 ---------~~~V--------------------------------tsLafSPdg~~LaSgS-------------------  100 (633)
                               ..++                                ..++++|+..++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                     0000                                1346666544554432                   


Q ss_pred             --------------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743          101 --------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus       101 --------------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                                    .+|.|+.||+.+++.+-......++..-.....+..|++|+.||.|+.||.++++.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence                          25789999999999886665443333222233577888899999999999999853

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.64  E-value=0.013  Score=61.24  Aligned_cols=178  Identities=9%  Similarity=-0.033  Sum_probs=112.7

Q ss_pred             CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-C
Q 006743           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-D   92 (633)
Q Consensus        14 ~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-d   92 (633)
                      ....|+..++........+..  ......++|.+.+..++++-...+.|+.++..+... ...+.........+++.+ .
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~~~~~p~glavd~~~  127 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVSTGLESPGGLAVDWVH  127 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTT
T ss_pred             cccceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEEEeCCCCCccEEEEecCC
Confidence            445688888765544333332  234567999987775666666788999999987653 233333334567899988 4


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEE-cC-CeEEEEECCCCCCceEEEeecCCCCC
Q 006743           93 DKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SN-GRVVFYDIRGKPQPLTVLRACSSSEA  169 (633)
Q Consensus        93 g~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs-~D-GsV~IWDlrs~~k~v~~l~~~~H~~~  169 (633)
                      ++++++-...+.|.++++........+. .-.....++++|.+..|+... .+ +.|+.+++.....  ..+. ...-..
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~-~~~~~~  204 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIA-DTHLFW  204 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EESC-CSSCSC
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc--EEEE-ECCCCC
Confidence            5555666667899999987654333332 345688999999666555444 44 7899999876422  2221 122345


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       170 VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ...|+|++++..           ++++-...+.|..+|+
T Consensus       205 PnGla~d~~~~~-----------lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          205 PNGLTIDYAGRR-----------MYWVDAKHHVIERANL  232 (349)
T ss_dssp             EEEEEEETTTTE-----------EEEEETTTTEEEEEET
T ss_pred             cceEEEeCCCCE-----------EEEEECCCCEEEEEeC
Confidence            788999986443           4444444566666665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.62  E-value=0.0065  Score=63.02  Aligned_cols=180  Identities=7%  Similarity=-0.009  Sum_probs=113.3

Q ss_pred             CCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC
Q 006743           14 LSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS   91 (633)
Q Consensus        14 ~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP   91 (633)
                      ....|+.+++....  ....+.  .......|+|.+.+..++++-...+.|+.++..+.......+...-.....+++.+
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred             ccCeEEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence            45689999987653  112222  11234568999876657777677889999999776422222333334577899987


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCCCceEEEeecCCC
Q 006743           92 -DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT--SNGRVVFYDIRGKPQPLTVLRACSSS  167 (633)
Q Consensus        92 -dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs--~DGsV~IWDlrs~~k~v~~l~~~~H~  167 (633)
                       .++++++-...+.|.++|+........+ ........++++|.+..|+...  ..+.|+.+++..... .....  ..-
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~--~~l  165 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN--SEI  165 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEEC--SSC
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEE--CCC
Confidence             5555566667789999998754433333 3445688999999766666655  357899999876422 12222  223


Q ss_pred             CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       168 ~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .....|+|++++..           ++++-...+.|..+|+.
T Consensus       166 ~~Pnglavd~~~~~-----------lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          166 YWPNGLTLDYEEQK-----------LYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             SCEEEEEEETTTTE-----------EEEEETTTTEEEEEETT
T ss_pred             CCccEEEEeccCCE-----------EEEEECCCCEEEEEcCC
Confidence            45688999986443           34444445666666653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.57  E-value=0.03  Score=59.77  Aligned_cols=184  Identities=7%  Similarity=-0.050  Sum_probs=117.7

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccCCCCe
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQHSAPT   84 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---~~v~~l~~H~~~V   84 (633)
                      +|+.+ ....|+..++........+.  ....+..|+|.+.+..++++-...+.|+.+++.+..   .....+.......
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            44444 45788999987665444443  334566799998777566666678899999987621   1233344345678


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCCCceEE
Q 006743           85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        85 tsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~--DGsV~IWDlrs~~k~v~~  160 (633)
                      ..+++.+ .++++++-...+.|.+.|+........+. .......|+++|.+.+|+....  .+.|+..++..... ...
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~  240 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL  240 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EEE
Confidence            8999998 55555666677899999998665544443 4456899999997666665543  47899999886532 222


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +.  ..-.....|++++++..           ++++-...+.|..+|+
T Consensus       241 ~~--~~l~~P~glavd~~~~~-----------lY~aD~~~~~I~~~d~  275 (400)
T 3p5b_L          241 VT--ENIQWPNGITLDLLSGR-----------LYWVDSKLHSISSIDV  275 (400)
T ss_dssp             EC--SSCSCEEEEEEETTTTE-----------EEEEETTTTEEEEEET
T ss_pred             EE--CCCCceEEEEEEeCCCE-----------EEEEECCCCEEEEEeC
Confidence            22  23356789999986443           4444444556666665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.52  E-value=0.0016  Score=75.27  Aligned_cols=135  Identities=11%  Similarity=0.075  Sum_probs=87.3

Q ss_pred             cEEEEEEc-cCCCeEEEEEeCCC----eEEEEECCCC-CceeEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 006743           39 VLRVLDYS-RNSRHLLVTAGDDG----TLHLWDTTGR-SPKVSWLKQHSAPTAGISFSSDDKIIASVGLD-----KKLYT  107 (633)
Q Consensus        39 ~VssLafS-pdg~~lLaSGs~DG----tI~IWDl~t~-~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D-----GtVrI  107 (633)
                      .+...+|+ |||+.++++...+|    .|+++|+.++ +.....+.   .....++|+||++.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            56778999 99985555555444    4999999887 52111111   113468899999988887765     36889


Q ss_pred             EeCCCCcee--eEe--eCCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEcc
Q 006743          108 YDPGSRRPS--SCI--TYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       108 WDlrtgk~v--~~i--~h~~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~k~v--~~l~~~~H~~~VtsLafsP  177 (633)
                      +++.+++..  .++  ........+.|+|||++|+....   ...|+++|+.+.....  ..+. ....+...++.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR-PREKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-CCCTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee-cCCCCceEEEeeee
Confidence            999876532  232  23345678899999999887663   3468999998753222  2222 13345556666544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.52  E-value=0.033  Score=58.18  Aligned_cols=169  Identities=8%  Similarity=-0.050  Sum_probs=104.2

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |++.++.|+... ..+.|..+++........+.. .......+++.+.+.+++++-...+.|.+.++.+... ...+...
T Consensus        80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~  157 (349)
T 3v64_C           80 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQS  157 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTT
T ss_pred             EeccccEEEEEeccCCceEEEecCCCCceEEEeC-CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCC
Confidence            555555555444 456777777765443332322 2223356888876666777777788999999987653 2233334


Q ss_pred             CCCeEEEEEcCCCCE-EEEEeCC-CeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCC
Q 006743           81 SAPTAGISFSSDDKI-IASVGLD-KKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQ  156 (633)
Q Consensus        81 ~~~VtsLafSPdg~~-LaSgS~D-GtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k  156 (633)
                      -.....+++.|.+.. +++-..+ +.|..+|+.......... .-.....++++|++..|..+. ..+.|..+|+.....
T Consensus       158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~  237 (349)
T 3v64_C          158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  237 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce
Confidence            456799999995554 4444444 789999987543333322 345678999998777666554 467899999876432


Q ss_pred             ceEEEeecCCCCCeeEEEE
Q 006743          157 PLTVLRACSSSEAVSSLCW  175 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLaf  175 (633)
                       ...+.  .......++++
T Consensus       238 -~~~~~--~~~~~P~giav  253 (349)
T 3v64_C          238 -KAVIS--QGLPHPFAITV  253 (349)
T ss_dssp             -EEEEC--SSCSSEEEEEE
T ss_pred             -EEEEe--CCCCCceEEEE
Confidence             22222  22344566666

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.52  E-value=0.011  Score=62.38  Aligned_cols=152  Identities=13%  Similarity=0.155  Sum_probs=104.0

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEE-EeC----CC-CCcEEEEEE---ccCCCeEEEEEe-------------C
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAE-LKD----PN-EQVLRVLDY---SRNSRHLLVTAG-------------D   58 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~-~~~----~~-~~~VssLaf---Spdg~~lLaSGs-------------~   58 (633)
                      |++.+..|..++ ..|.|..||...+..... +.+    .. ...+..|.|   .++++ ++++..             .
T Consensus        20 wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g   98 (334)
T 2p9w_A           20 YDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHG   98 (334)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSS
T ss_pred             CcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccccccccccccCC
Confidence            666666677676 689999999875544333 221    01 124578999   57765 565443             2


Q ss_pred             CCeEEEEECC---CCCceeE-EeccC-----------CCCeEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeeEe-e-
Q 006743           59 DGTLHLWDTT---GRSPKVS-WLKQH-----------SAPTAGISFSSDDKIIASVGLD-KKLYTYDPGSRRPSSCI-T-  120 (633)
Q Consensus        59 DGtI~IWDl~---t~~~~v~-~l~~H-----------~~~VtsLafSPdg~~LaSgS~D-GtVrIWDlrtgk~v~~i-~-  120 (633)
                      +..|..||+.   +++.... .+...           ....++++..++|+..++++.. +.|..+|.......... . 
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~  178 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES  178 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence            6889999998   5553222 22111           1247899999999999999988 88888887754332222 1 


Q ss_pred             ----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743          121 ----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       121 ----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                          .....+.|+++|+|+.|++....|.|..+|++..
T Consensus       179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence                1233679999999999998877999999999853

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.47  E-value=0.073  Score=56.70  Aligned_cols=172  Identities=12%  Similarity=-0.033  Sum_probs=104.4

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      |++.++.|+... ..+.|+.+++....   ....+..........|++.+.+++++++-...+.|.+.++.+... ...+
T Consensus       119 ~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~  197 (400)
T 3p5b_L          119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF  197 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEE
T ss_pred             eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEE
Confidence            555555555554 34667777765421   122222223344567888886666777777788999999987663 2233


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEe-C-CCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVG-L-DKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRG  153 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS-~-DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs  153 (633)
                      .........|++.|.+.+|+... . .+.|...++........+. .-.....|++++++..|..+. ..+.|..+|+..
T Consensus       198 ~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          198 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            33445689999999655555554 2 3689999987544433332 336789999999877777665 467899999976


Q ss_pred             CCCceEEEeecCCCCCeeEEEE
Q 006743          154 KPQPLTVLRACSSSEAVSSLCW  175 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLaf  175 (633)
                      ... ..+......-....++++
T Consensus       278 ~~~-~~~~~~~~~l~~P~gl~v  298 (400)
T 3p5b_L          278 GNR-KTILEDEKRLAHPFSLAV  298 (400)
T ss_dssp             CCC-EEEEECSSTTSSEEEEEE
T ss_pred             Ccc-EEEEeCCCCCCCCEEEEE
Confidence            532 222322122234456665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.45  E-value=0.0013  Score=74.70  Aligned_cols=149  Identities=16%  Similarity=0.118  Sum_probs=88.1

Q ss_pred             cC-CCCEEEEEECCC-----------cEEEEECCCCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEEC
Q 006743            3 NC-KDEHLASISLSG-----------DLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDT   67 (633)
Q Consensus         3 Sp-dG~~LaSgs~DG-----------~I~IWDl~tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs-~DGtI~IWDl   67 (633)
                      .+ +|+.++.|+.++           .+.+||..+++.  +..+...+......+++..++. +++.|+ .+..+.+||.
T Consensus       194 ~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~  272 (656)
T 1k3i_A          194 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDS  272 (656)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEG
T ss_pred             EecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecC
Confidence            44 778888887543           588999987753  3333322333333466777887 788877 4568999999


Q ss_pred             CCCCceeEEec-cC-CCCeEEEEEcCCCCEEEEEe-CC-----CeEEEEeCCCCceeeEe-----eCCCCeEEEEEecCC
Q 006743           68 TGRSPKVSWLK-QH-SAPTAGISFSSDDKIIASVG-LD-----KKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDD  134 (633)
Q Consensus        68 ~t~~~~v~~l~-~H-~~~VtsLafSPdg~~LaSgS-~D-----GtVrIWDlrtgk~v~~i-----~h~~~ItsLafSPdG  134 (633)
                      .+....  .+. .+ ...-.++++.+++++++.|+ .+     ..+.+||..+++-...-     .....-....+..++
T Consensus       273 ~t~~W~--~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~  350 (656)
T 1k3i_A          273 SSDSWI--PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN  350 (656)
T ss_dssp             GGTEEE--ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC
T ss_pred             cCCcee--ECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCC
Confidence            766521  111 11 12223456667899999998 44     47999999887644321     000000001222455


Q ss_pred             CEEEEEEcCC---------eEEEEECCCC
Q 006743          135 WILTAGTSNG---------RVVFYDIRGK  154 (633)
Q Consensus       135 ~~LatGs~DG---------sV~IWDlrs~  154 (633)
                      +.++.|+.+|         .|..||..+.
T Consensus       351 ~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~  379 (656)
T 1k3i_A          351 HAWLFGWKKGSVFQAGPSTAMNWYYTSGS  379 (656)
T ss_dssp             SCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred             ceEEEECCCCcEEEecCccceeeeecCCc
Confidence            5666665554         4678888765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.43  E-value=0.0075  Score=68.33  Aligned_cols=152  Identities=9%  Similarity=-0.015  Sum_probs=98.7

Q ss_pred             CCCCEEEEEECC----------------CcEEEEECCCCceeEEEeCCCC---------CcEEEEEEc-cCCC--eEEEE
Q 006743            4 CKDEHLASISLS----------------GDLILHNLASGAKAAELKDPNE---------QVLRVLDYS-RNSR--HLLVT   55 (633)
Q Consensus         4 pdG~~LaSgs~D----------------G~I~IWDl~tgk~v~~~~~~~~---------~~VssLafS-pdg~--~lLaS   55 (633)
                      ++..+++.+..+                +.|..+|..+|+.+-.++..+.         ..+. +... .+|+  .+++.
T Consensus       250 ~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~  328 (599)
T 1w6s_A          250 PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTH  328 (599)
T ss_dssp             TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEE
T ss_pred             CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEE
Confidence            456677777655                3799999999999888775332         1121 2222 3553  36788


Q ss_pred             EeCCCeEEEEECCCCCceeEEecc------------CCCCe--------------------------EEEEEcCCCCEEE
Q 006743           56 AGDDGTLHLWDTTGRSPKVSWLKQ------------HSAPT--------------------------AGISFSSDDKIIA   97 (633)
Q Consensus        56 Gs~DGtI~IWDl~t~~~~v~~l~~------------H~~~V--------------------------tsLafSPdg~~La   97 (633)
                      ++.+|.++++|.++++.....-..            ...+|                          ..++++|+..+++
T Consensus       329 ~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~y  408 (599)
T 1w6s_A          329 PDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFF  408 (599)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEE
T ss_pred             ECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEE
Confidence            899999999999888743222111            11111                          1356666655554


Q ss_pred             EEe---------------------------------------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEE
Q 006743           98 SVG---------------------------------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        98 SgS---------------------------------------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~La  138 (633)
                      +..                                       .+|.|..||+.+++.+-......+...-.+...+..|+
T Consensus       409 v~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf  488 (599)
T 1w6s_A          409 MGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVF  488 (599)
T ss_dssp             EEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEE
T ss_pred             EeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEE
Confidence            421                                       34789999999999877665443332222233577888


Q ss_pred             EEEcCCeEEEEECCCCCC
Q 006743          139 AGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~k  156 (633)
                      .++.||.|+.||.++++.
T Consensus       489 ~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          489 YGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             EECTTSEEEEEETTTCCE
T ss_pred             EECCCCeEEEEECCCCCE
Confidence            899999999999999854

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.43  E-value=0.028  Score=59.54  Aligned_cols=188  Identities=9%  Similarity=-0.032  Sum_probs=113.4

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |++.++.|+... ..+.|..+++........+.. .......+++.+.+.+++++-...+.|.+.++.+... ...+...
T Consensus       123 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~  200 (386)
T 3v65_B          123 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQS  200 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSS
T ss_pred             EecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCC
Confidence            555555555444 456788888765543333322 2223345788876666777777788999999876653 2233334


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCC
Q 006743           81 SAPTAGISFSSDDKIIASVG-LD-KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQ  156 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS-~D-GtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k  156 (633)
                      ......+++.|.+..|+... .+ +.|..+|+......... ..-.....|+|+|++..|..+. ..+.|..+|+.....
T Consensus       201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (386)
T 3v65_B          201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  280 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred             CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence            46689999999655555444 44 68999998754433333 2344678999998776666554 567899999876432


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                       ...+.  .......+|++.             ++.++++....+.|..+|
T Consensus       281 -~~~~~--~~~~~P~giav~-------------~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          281 -KAVIS--QGLPHPFAITVF-------------EDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             -EEEEC--SSCSSEEEEEEE-------------TTEEEEEETTTTEEEEEE
T ss_pred             -EEEEE--CCCCCceEEEEE-------------CCEEEEeeCCCCeEEEEE
Confidence             22222  223445666662             234445544455555554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.39  E-value=0.0019  Score=73.22  Aligned_cols=181  Identities=10%  Similarity=0.041  Sum_probs=101.4

Q ss_pred             cCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-CC-----CeEEEEECCCCCceeE
Q 006743            3 NCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DD-----GTLHLWDTTGRSPKVS   75 (633)
Q Consensus         3 SpdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs-~D-----GtI~IWDl~t~~~~v~   75 (633)
                      ..+|+.++.|+. ++.+.+||..+++-...-..+....-.+++..++++ +++.|+ .+     ..+.+||..+......
T Consensus       251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            467888888884 568999998776533221111122222345666777 777777 44     5689999876542110


Q ss_pred             -------Eecc-------CCC-------------------------------------------------CeEEEEEcC-
Q 006743           76 -------WLKQ-------HSA-------------------------------------------------PTAGISFSS-   91 (633)
Q Consensus        76 -------~l~~-------H~~-------------------------------------------------~VtsLafSP-   91 (633)
                             ....       +..                                                 .-.++.|.. 
T Consensus       330 ~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~  409 (656)
T 1k3i_A          330 PNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV  409 (656)
T ss_dssp             TTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred             CCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC
Confidence                   0000       000                                                 112233333 


Q ss_pred             CCCEEEEEeCCC-----------eEEEEeCCCCceeeEe----eCCCCeEEEEEecCCCEEEEEEcC-----------Ce
Q 006743           92 DDKIIASVGLDK-----------KLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSN-----------GR  145 (633)
Q Consensus        92 dg~~LaSgS~DG-----------tVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG~~LatGs~D-----------Gs  145 (633)
                      ++++++.|+.++           .|.+||..+.......    .......+++..|++++++.|+.+           ..
T Consensus       410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence            677777877542           6888898876654432    122223455677899999999864           46


Q ss_pred             EEEEECCCCCCceEEEeecCC-CCCeeEEEEccCCCeEEEec
Q 006743          146 VVFYDIRGKPQPLTVLRACSS-SEAVSSLCWQRAKPVFIDET  186 (633)
Q Consensus       146 V~IWDlrs~~k~v~~l~~~~H-~~~VtsLafsPdg~~Las~s  186 (633)
                      +.+||..+..  ...+....+ .....+..+.++++.++.++
T Consensus       490 v~~ydp~t~~--W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          490 PEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             CEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             eEEEcCCCCc--eeecCCCCCccccccHhhcCCCcEEEecCC
Confidence            8999997652  122221111 12223344567766666653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.36  E-value=0.0052  Score=66.39  Aligned_cols=149  Identities=8%  Similarity=0.070  Sum_probs=95.1

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEE
Q 006743            2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSW   76 (633)
Q Consensus         2 FSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~~~~v~~   76 (633)
                      |+| ++..|+++...+.|+.+|+..+.......  .......|+|+++++.++++...++    .+.+++..........
T Consensus       144 vdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~  221 (430)
T 3tc9_A          144 FDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITE  221 (430)
T ss_dssp             EETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEE
T ss_pred             ECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeee
Confidence            556 35566666655889999987655443333  3445677999999984444443222    3444554332211122


Q ss_pred             eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEE-EcCCeEEEEECC
Q 006743           77 LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIR  152 (633)
Q Consensus        77 l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatG-s~DGsV~IWDlr  152 (633)
                      +.. .....+++++| ++.++++-..++.|+.||...+.......  .......++|+|+|++|+.+ ...+.|+.++..
T Consensus       222 l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          222 LTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            222 23467889999 77777776678899999998766433332  33457899999999965555 457889998876


Q ss_pred             C
Q 006743          153 G  153 (633)
Q Consensus       153 s  153 (633)
                      .
T Consensus       301 ~  301 (430)
T 3tc9_A          301 W  301 (430)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.35  E-value=0.02  Score=57.98  Aligned_cols=142  Identities=15%  Similarity=0.197  Sum_probs=93.1

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-  115 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l-~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~-  115 (633)
                      ..+..++|+|++..++++...++.|...|.. ++. ...+ .........|++.+++.++++.-.++.+.++++..... 
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence            4689999999877677778889999999998 442 3333 23335688999998887767766778899998765432 


Q ss_pred             --eeEee-------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--CCCceEEEee-----cCCCCCeeEEEEccCC
Q 006743          116 --SSCIT-------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG--KPQPLTVLRA-----CSSSEAVSSLCWQRAK  179 (633)
Q Consensus       116 --v~~i~-------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs--~~k~v~~l~~-----~~H~~~VtsLafsPdg  179 (633)
                        +....       .......++|+|.++.|+++.+.....||.++.  ....+..+..     ..+...+.+++++|..
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence              12221       234468999999998887777655545554432  1112333321     1234457899999964


Q ss_pred             Ce
Q 006743          180 PV  181 (633)
Q Consensus       180 ~~  181 (633)
                      ..
T Consensus       185 g~  186 (255)
T 3qqz_A          185 NT  186 (255)
T ss_dssp             TE
T ss_pred             Ce
Confidence            33

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.33  E-value=0.012  Score=63.57  Aligned_cols=148  Identities=9%  Similarity=0.043  Sum_probs=92.0

Q ss_pred             ccCC--CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC---Ce-EEEEECCCCCceeE
Q 006743            2 YNCK--DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---GT-LHLWDTTGRSPKVS   75 (633)
Q Consensus         2 FSpd--G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D---Gt-I~IWDl~t~~~~v~   75 (633)
                      |+++  +..|+.+...+.|+.+|..+++......  .......|+|+++++ ++++....   .. +..++.........
T Consensus       146 vd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~  222 (433)
T 4hw6_A          146 FDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERL  222 (433)
T ss_dssp             ECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEE
T ss_pred             EccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccc
Confidence            5563  4556666555889999987776554332  344567899999998 55554321   22 33333322221111


Q ss_pred             EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee-eEee--CCCCeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 006743           76 WLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPS-SCIT--YEAPFSSLAFIDDDWILTAGT-SNGRVVFYD  150 (633)
Q Consensus        76 ~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v-~~i~--h~~~ItsLafSPdG~~LatGs-~DGsV~IWD  150 (633)
                      .+. .......++++| ++.++++-..++.|+.+|..++... ....  .......++|+|++++|+.+. ..+.|+.+|
T Consensus       223 ~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~  301 (433)
T 4hw6_A          223 SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVD  301 (433)
T ss_dssp             EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            121 234457789999 7776666667789999999877662 2222  223345799999999666554 568899988


Q ss_pred             CCC
Q 006743          151 IRG  153 (633)
Q Consensus       151 lrs  153 (633)
                      ...
T Consensus       302 ~d~  304 (433)
T 4hw6_A          302 YNR  304 (433)
T ss_dssp             BCT
T ss_pred             CCC
Confidence            763

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.31  E-value=0.0093  Score=68.13  Aligned_cols=148  Identities=16%  Similarity=0.049  Sum_probs=94.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCc----------EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQV----------LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~----------VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~   75 (633)
                      +..|++++.++.|+.+|..+|+.+-++.......          ...+.+.  +. .++.++.|+.|+.+|..+++..-.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD-KVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CC-EEEEEcCCCEEEEEECCCCCEeee
Confidence            5677888889999999999999988775422110          0112222  33 578888999999999998884322


Q ss_pred             EeccCCCCeEEEEEcC--CCCEEEEEeC------CCeEEEEeCCCCceeeEeeCC--C----------------------
Q 006743           76 WLKQHSAPTAGISFSS--DDKIIASVGL------DKKLYTYDPGSRRPSSCITYE--A----------------------  123 (633)
Q Consensus        76 ~l~~H~~~VtsLafSP--dg~~LaSgS~------DGtVrIWDlrtgk~v~~i~h~--~----------------------  123 (633)
                      .-.........+.-.|  .+..++++..      ++.|+.||.++++.+..+...  .                      
T Consensus       143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            2111110001111112  2345555543      589999999999987665311  0                      


Q ss_pred             --------CeEEEEEecCCCEEEEEEcCCe-------------------EEEEECCCCCC
Q 006743          124 --------PFSSLAFIDDDWILTAGTSNGR-------------------VVFYDIRGKPQ  156 (633)
Q Consensus       124 --------~ItsLafSPdG~~LatGs~DGs-------------------V~IWDlrs~~k  156 (633)
                              ....++++|+...|+.+..++.                   |+.+|.++++.
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~  282 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL  282 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce
Confidence                    1124688888889988887764                   99999999853

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.30  E-value=0.059  Score=55.72  Aligned_cols=189  Identities=9%  Similarity=-0.040  Sum_probs=109.6

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCcee-EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v-~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      |++.++.|+... ..+.|..+++..+... ..+.. .......+++.+.+.+++++-...+.|.++++.+.... .....
T Consensus        42 ~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~  119 (318)
T 3sov_A           42 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQ  119 (318)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS
T ss_pred             EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EEEeC
Confidence            444444444333 3456666666544211 11111 11223457888766657777677889999999876532 22334


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKP  155 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~  155 (633)
                      .......+++.|.+..|+.+.  ..+.|..+++......... ..-.....+++++++..|..+. ..+.|..+|+....
T Consensus       120 ~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~  199 (318)
T 3sov_A          120 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  199 (318)
T ss_dssp             SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence            446679999999655555555  3578999998643332232 2335678999999777666554 56889999997643


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .  +.+.. .......++++..             +.++++....+.|..+|.
T Consensus       200 ~--~~~~~-~~~~~P~glav~~-------------~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          200 R--QAVVK-GSLPHPFALTLFE-------------DILYWTDWSTHSILACNK  236 (318)
T ss_dssp             C--EEEEC-SCCSCEEEEEEET-------------TEEEEEETTTTEEEEEET
T ss_pred             e--EEEec-CCCCCceEEEEeC-------------CEEEEEecCCCeEEEEEC
Confidence            2  22221 2334455666542             344444444555555554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.18  E-value=0.014  Score=65.35  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=69.4

Q ss_pred             CCEEEEEEC------CCcEEEEECCCCceeEEEeCCCCC-------------------------------------cEEE
Q 006743            6 DEHLASISL------SGDLILHNLASGAKAAELKDPNEQ-------------------------------------VLRV   42 (633)
Q Consensus         6 G~~LaSgs~------DG~I~IWDl~tgk~v~~~~~~~~~-------------------------------------~Vss   42 (633)
                      +..+++++.      +|.|+.+|..+|+.+-.+......                                     ....
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            345666654      789999999999988776532110                                     0012


Q ss_pred             EEEccCCCeEEEEEeCC----------------CeEEEEECCCCCceeEE-eccCC--------CCeEEEEEcCCCC---
Q 006743           43 LDYSRNSRHLLVTAGDD----------------GTLHLWDTTGRSPKVSW-LKQHS--------APTAGISFSSDDK---   94 (633)
Q Consensus        43 LafSpdg~~lLaSGs~D----------------GtI~IWDl~t~~~~v~~-l~~H~--------~~VtsLafSPdg~---   94 (633)
                      +++.++.. +++.+..+                +.|..+|..+++..-+. ...|.        .++. +....+++   
T Consensus       240 ~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          240 YAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             EEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            45566555 45554422                36999999988743221 11221        2221 22223664   


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeEee
Q 006743           95 IIASVGLDKKLYTYDPGSRRPSSCIT  120 (633)
Q Consensus        95 ~LaSgS~DGtVrIWDlrtgk~v~~i~  120 (633)
                      .++.++.+|.|+++|.++++.+....
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeec
Confidence            57788999999999999998876553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.17  E-value=0.083  Score=61.77  Aligned_cols=180  Identities=7%  Similarity=-0.047  Sum_probs=112.2

Q ss_pred             ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccCCCCeEEEEE
Q 006743           13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQHSAPTAGISF   89 (633)
Q Consensus        13 s~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---~~v~~l~~H~~~VtsLaf   89 (633)
                      .....|+..++........+.  ....+..|+|.+.+..++++-...+.|+.+++.+..   .....+.........|++
T Consensus       401 an~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          401 TNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  478 (791)
T ss_dssp             ECBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             ccccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence            345568888876555444333  234456799998766577777778899999997532   113334434566788999


Q ss_pred             cCCC-CEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEc-C-CeEEEEECCCCCCceEEEeecC
Q 006743           90 SSDD-KIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS-N-GRVVFYDIRGKPQPLTVLRACS  165 (633)
Q Consensus        90 SPdg-~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~-D-GsV~IWDlrs~~k~v~~l~~~~  165 (633)
                      .+.+ +++++-...+.|.+.|+.......++. .......|+++|.+.+|+.... + +.|.+.++..... ..++.  .
T Consensus       479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~--~  555 (791)
T 3m0c_C          479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT--E  555 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEEC--S
T ss_pred             eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEe--C
Confidence            9855 455555567899999998655444443 4456899999998666665553 3 7899999876532 22222  2


Q ss_pred             CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          166 SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       166 H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .-.....|++++.+..           ++++-...+.|...|+
T Consensus       556 ~l~~P~GLavD~~~~~-----------LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGR-----------LYWVDSKLHSISSIDV  587 (791)
T ss_dssp             SCSCEEEEEEETTTTE-----------EEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEecCCCe-----------EEEEeCCCCcEEEEec
Confidence            3357888999875443           3344344455555554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.15  E-value=0.017  Score=60.83  Aligned_cols=156  Identities=12%  Similarity=0.106  Sum_probs=102.7

Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc----CC--CCeEEEEE---cCCCCEEEEEe-----------
Q 006743           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ----HS--APTAGISF---SSDDKIIASVG-----------  100 (633)
Q Consensus        41 ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~----H~--~~VtsLaf---SPdg~~LaSgS-----------  100 (633)
                      .+++|.+....++++.-..+.|..||..++......+..    ..  ..+.+|.|   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            357898866645555557999999999755422222221    11  13589999   68877777544           


Q ss_pred             --CCCeEEEEeCC---CCceeeEeeC--------------CCCeEEEEEecCCCEEEEEEcC-CeEEEEECCCCCCceEE
Q 006743          101 --LDKKLYTYDPG---SRRPSSCITY--------------EAPFSSLAFIDDDWILTAGTSN-GRVVFYDIRGKPQPLTV  160 (633)
Q Consensus       101 --~DGtVrIWDlr---tgk~v~~i~h--------------~~~ItsLafSPdG~~LatGs~D-GsV~IWDlrs~~k~v~~  160 (633)
                        .+..|..||+.   +++.+.....              ...+..++..++|+..++++.. +.|..++..... ....
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eeee
Confidence              26789999999   7877655531              1248899999999999999988 988888887652 2211


Q ss_pred             Eeec---CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          161 LRAC---SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       161 l~~~---~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ....   ...-..+.|+++|+|..|+..           .+ ++.+..+|+.
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~-----------~~-~g~L~~fD~~  214 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAF-----------GG-PRALTAFDVS  214 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEE-----------SS-SSSEEEEECS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEE-----------cC-CCeEEEEcCC
Confidence            1111   112236789999976555443           23 6777777776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.15  E-value=0.067  Score=61.63  Aligned_cols=170  Identities=12%  Similarity=0.093  Sum_probs=111.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeC------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKD------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~------~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|. |..|+.+ -|.+||..+++.......      -....|.++...++|.  |..|..++-|.+|+......  ..+.
T Consensus       273 ~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~--~~~~  346 (795)
T 4a2l_A          273 QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRF--KNIR  346 (795)
T ss_dssp             TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSS--EEEC
T ss_pred             CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccc--eEEc
Confidence            344 4445555 588899766654332211      1235688888888876  77788888899998765542  2221


Q ss_pred             c-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEecCCCEEEEEEc
Q 006743           79 Q-------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        79 ~-------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSPdG~~LatGs~  142 (633)
                      .       ....|.++...++++ |..|+.++-|.+||..+++......         ....|.+++..++|..|.+|+.
T Consensus       347 ~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~  425 (795)
T 4a2l_A          347 NIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH  425 (795)
T ss_dssp             CCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC
Confidence            1       235699999888776 4557777779999998776544321         1356899999988886778888


Q ss_pred             CCeEEEEECCCCCCceEEEeec---CCCCCeeEEEEccCCCeEE
Q 006743          143 NGRVVFYDIRGKPQPLTVLRAC---SSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       143 DGsV~IWDlrs~~k~v~~l~~~---~H~~~VtsLafsPdg~~La  183 (633)
                      ++-|.+||.+++.  +..+...   .....|.++..+++|...+
T Consensus       426 ~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwi  467 (795)
T 4a2l_A          426 AGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGNLWL  467 (795)
T ss_dssp             TTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred             cCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence            7789999988753  2222210   1245688888777655443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.14  E-value=0.011  Score=63.78  Aligned_cols=138  Identities=13%  Similarity=0.069  Sum_probs=88.1

Q ss_pred             EEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC-C----eEEEEeCCCC
Q 006743           40 LRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD-K----KLYTYDPGSR  113 (633)
Q Consensus        40 VssLafSp-dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D-G----tVrIWDlrtg  113 (633)
                      ...|+|+| ++. .|+.+...+.|+.+|..+..  +..+.........|+|++++++|+.+... +    .+.+++. .+
T Consensus       139 P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          139 AVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCEEEEETTEEE-EEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCEEEECCCCCC-eEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            35688997 344 45555555889999998765  34444455678999999999966666542 1    3444443 33


Q ss_pred             cee--eEeeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 006743          114 RPS--SCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       114 k~v--~~i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~La  183 (633)
                      ...  ..+........++++| +|.++++-..++.|+.||......  ..+...........++|+|++++|+
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--TPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--EEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEEEcCCCCcceeEEEcCCCCEEE
Confidence            222  2333344567788999 677666666789999999986521  1222222234578899999876443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.10  E-value=0.053  Score=62.49  Aligned_cols=168  Identities=12%  Similarity=0.128  Sum_probs=110.4

Q ss_pred             EEEEECCCcEEEEECCCCceeEEEeC------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-c--
Q 006743            9 LASISLSGDLILHNLASGAKAAELKD------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-Q--   79 (633)
Q Consensus         9 LaSgs~DG~I~IWDl~tgk~v~~~~~------~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~--   79 (633)
                      |-.|+.++-|..|+..++.. ..+..      -....|.++...+++.  |..|..++-|..||..+...  ..+. .  
T Consensus       323 lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~  397 (795)
T 4a2l_A          323 MWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRF--TSYTLQED  397 (795)
T ss_dssp             EEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCE--EEECCC--
T ss_pred             EEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcE--EEEecCCC
Confidence            44577777788888654432 22221      1235688888887776  77788887899999877652  2221 1  


Q ss_pred             ------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-----CCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           80 ------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        80 ------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-----h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                            ....|.+++..++++.|..|+.++-|.+||.++++......     ....|.++...++|.+.+ |+.+| |.+
T Consensus       398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~G-l~~  475 (795)
T 4a2l_A          398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLSA-LVR  475 (795)
T ss_dssp             ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESSC-EEE
T ss_pred             CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecCc-eeE
Confidence                  23579999998888867778887789999998877554331     245789999888887554 44444 888


Q ss_pred             EECCCCCCceEEEee-----cCCCCCeeEEEEccCCCeEEEe
Q 006743          149 YDIRGKPQPLTVLRA-----CSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       149 WDlrs~~k~v~~l~~-----~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ||..+..  +..+..     .-....|.++..+++|...+..
T Consensus       476 ~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          476 FNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             EETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred             EeCCCCe--EEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence            9987652  122211     0123568888888877655543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.05  E-value=0.15  Score=59.71  Aligned_cols=151  Identities=11%  Similarity=-0.032  Sum_probs=94.4

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCC----ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASG----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tg----k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~   76 (633)
                      |++.++.|+... ..+.|+.+++...    .....+. ........|++.+.+++++++-...+.|.+.++.+... ...
T Consensus       431 ~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l  508 (791)
T 3m0c_C          431 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTL  508 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEE
T ss_pred             ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEE
Confidence            344344444333 3455666666432    1122222 12233456888888876777777889999999987663 222


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEE-cCCeEEEEECC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVG-LD-KKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIR  152 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS-~D-GtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlr  152 (633)
                      +.........|++.|...+|+... .+ +.|.+.++........+. .-.....|++++.+..|+.+. ..+.|..+|+.
T Consensus       509 ~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          509 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence            333445689999999655555554 33 689999987544443433 335789999998777666654 45789999997


Q ss_pred             CC
Q 006743          153 GK  154 (633)
Q Consensus       153 s~  154 (633)
                      ..
T Consensus       589 G~  590 (791)
T 3m0c_C          589 GG  590 (791)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.04  E-value=0.021  Score=64.61  Aligned_cols=149  Identities=14%  Similarity=0.048  Sum_probs=94.5

Q ss_pred             CCEEEEEEC-CCcEEEEEC-CCCceeEEEeCCCCC----------cEEEEEEccCCC---eEEEEEeCCCeEEEEECCCC
Q 006743            6 DEHLASISL-SGDLILHNL-ASGAKAAELKDPNEQ----------VLRVLDYSRNSR---HLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         6 G~~LaSgs~-DG~I~IWDl-~tgk~v~~~~~~~~~----------~VssLafSpdg~---~lLaSGs~DGtI~IWDl~t~   70 (633)
                      +..|++++. ++.|+.+|. .+|+.+-++......          ....+++.|.+.   ..++.++.|+.|+.+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            556777887 899999999 899998777642211          112244533333   13778889999999999988


Q ss_pred             CceeEE-eccCC--CCeEE-EEEcCCCCEEEEEe------CCCeEEEEeCCCCceeeEeeCCCCe---------------
Q 006743           71 SPKVSW-LKQHS--APTAG-ISFSSDDKIIASVG------LDKKLYTYDPGSRRPSSCITYEAPF---------------  125 (633)
Q Consensus        71 ~~~v~~-l~~H~--~~Vts-LafSPdg~~LaSgS------~DGtVrIWDlrtgk~v~~i~h~~~I---------------  125 (633)
                      +..-+. +..+.  ..+.+ ..+. ++ .+++++      .++.|+.+|.++++.+-.+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            843221 11110  01111 1111 34 555554      3899999999999987665322211               


Q ss_pred             ------------------------EEEEEecCCCEEEEEEcCC----------------eEEEEECCCCCC
Q 006743          126 ------------------------SSLAFIDDDWILTAGTSNG----------------RVVFYDIRGKPQ  156 (633)
Q Consensus       126 ------------------------tsLafSPdG~~LatGs~DG----------------sV~IWDlrs~~k  156 (633)
                                              ..+++.++...|+.+..++                .|+.+|.++++.
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~  290 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA  290 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce
Confidence                                    1356777778888887663                799999998843

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.96  E-value=0.011  Score=66.63  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEE--EEEecCCC-
Q 006743           59 DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSS--LAFIDDDW-  135 (633)
Q Consensus        59 DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~Its--LafSPdG~-  135 (633)
                      +|.|+.||+.+++..  +-..+...+..-.....+.+++.++.|+.|+.||.++++.+..+.....+.+  +.|..+|+ 
T Consensus       465 ~G~l~A~D~~tG~~~--W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVV--WEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEE--EEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEE--EEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            688999999888732  2222222222212222467888899999999999999999988765444433  56667776 


Q ss_pred             EEEEE
Q 006743          136 ILTAG  140 (633)
Q Consensus       136 ~LatG  140 (633)
                      ||++.
T Consensus       543 Yv~~~  547 (582)
T 1flg_A          543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.88  E-value=0.21  Score=56.76  Aligned_cols=171  Identities=10%  Similarity=-0.002  Sum_probs=111.3

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG   86 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vts   86 (633)
                      .+|+.+ ..+.|+..++........+....-.....|+|.+.+..++++-..++.|+.+++.+... ...+.........
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~G   84 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEG   84 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcce
Confidence            345444 56789999998665443333222234667999998776777777789999999987652 2333333346788


Q ss_pred             EEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCCCceEEEe
Q 006743           87 ISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIRGKPQPLTVLR  162 (633)
Q Consensus        87 LafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~--DGsV~IWDlrs~~k~v~~l~  162 (633)
                      +++.+. ++++++-...+.|.+.|+........+ ..-.....++++|...+|+....  .+.|...++.....  ..+.
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--~~l~  162 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--TTLV  162 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--EEEE
Confidence            999875 445555556779999998765433333 34456889999996556665542  57888888876532  2222


Q ss_pred             ecCCCCCeeEEEEccCCCeEE
Q 006743          163 ACSSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       163 ~~~H~~~VtsLafsPdg~~La  183 (633)
                        ..-.....|++++++..|.
T Consensus       163 --~~~~~P~GlalD~~~~~LY  181 (628)
T 4a0p_A          163 --PNVGRANGLTIDYAKRRLY  181 (628)
T ss_dssp             --CSCSSEEEEEEETTTTEEE
T ss_pred             --CCCCCcceEEEccccCEEE
Confidence              2345678889888654443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.84  E-value=0.057  Score=62.06  Aligned_cols=163  Identities=12%  Similarity=0.028  Sum_probs=100.6

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEe---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---cCC
Q 006743            8 HLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---QHS   81 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~---~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~---~H~   81 (633)
                      .|..|+.++-|.+||..++... .+.   ......|.++...+++.  |..|..++-|.+||..+..  ...+.   ...
T Consensus       375 ~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~  449 (781)
T 3v9f_A          375 KLWIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK--FQIIELEKNEL  449 (781)
T ss_dssp             CEEEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE--EEECCSTTTCC
T ss_pred             CEEEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc--EEEeccCCCCC
Confidence            3455666667888887544322 111   11245688888777776  6667877779999987665  23332   134


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h------~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                      ..|.++...+++. |..|+. +-|.+||..+++.......      ...|.+++..++|.+. +|+.++-|..||.++..
T Consensus       450 ~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCe
Confidence            6799998887776 444555 5589999987765443321      3578999998888755 45553347789887642


Q ss_pred             CceEEEeec--CCCCCeeEEEEccCCC
Q 006743          156 QPLTVLRAC--SSSEAVSSLCWQRAKP  180 (633)
Q Consensus       156 k~v~~l~~~--~H~~~VtsLafsPdg~  180 (633)
                        +..+...  -....|.++..+++|.
T Consensus       527 --~~~~~~~~~l~~~~i~~i~~d~~g~  551 (781)
T 3v9f_A          527 --VRKFNQYEGFCSNTINQIYRSSKGQ  551 (781)
T ss_dssp             --EEEECTTTTCSCSCEEEEEECTTSC
T ss_pred             --EEEccCCCCCCCCeeEEEEECCCCC
Confidence              2222211  1134577777766443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.82  E-value=0.14  Score=54.19  Aligned_cols=168  Identities=12%  Similarity=0.105  Sum_probs=97.6

Q ss_pred             CCCcEEEEECCC--Cce-eEEEeCC----CCCcEEEEEEcc--CCCeEEEEEe-C--CCeEEEEECCCCCce---eEEec
Q 006743           14 LSGDLILHNLAS--GAK-AAELKDP----NEQVLRVLDYSR--NSRHLLVTAG-D--DGTLHLWDTTGRSPK---VSWLK   78 (633)
Q Consensus        14 ~DG~I~IWDl~t--gk~-v~~~~~~----~~~~VssLafSp--dg~~lLaSGs-~--DGtI~IWDl~t~~~~---v~~l~   78 (633)
                      .+|.|.++|..+  ++. ...+.+.    ..-....|.+.+  ++..+|+.+. .  +..|.||++......   +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            689999999874  221 1123321    112445566655  4543444443 3  467888887543322   22222


Q ss_pred             cC-CCCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEE
Q 006743           79 QH-SAPTAGISFSSDDKIIASVG-----------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG  140 (633)
Q Consensus        79 ~H-~~~VtsLafSPdg~~LaSgS-----------------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatG  140 (633)
                      +. -...+++++.++|.++++..                 ..+.|+.||..  +.......-...+.++|+||++.|+++
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEE
Confidence            21 24578999999998777654                 12567777763  333333444568899999999888776


Q ss_pred             E-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEE
Q 006743          141 T-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFID  184 (633)
Q Consensus       141 s-~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP-dg~~Las  184 (633)
                      . ..+.|+.||+..... +...+.+...+..-.+++++ +|.+.++
T Consensus       239 dt~~~~I~~~~~~~~g~-l~~~~~~~~~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          239 ELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             EGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             eCCCCeEEEEEECCCCc-EecCEEEeCCCCCceEEEeCCCCcEEEE
Confidence            5 568899999874322 11111112245566777776 3554443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.82  E-value=0.19  Score=56.92  Aligned_cols=169  Identities=7%  Similarity=-0.006  Sum_probs=101.5

Q ss_pred             EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC
Q 006743           12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS   91 (633)
Q Consensus        12 gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP   91 (633)
                      -.....|+..++........+..........|+|++.+..++++=...+.|+.+++.+.......+...-.....+++.+
T Consensus        14 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~   93 (619)
T 3s94_A           14 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   93 (619)
T ss_dssp             EECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred             EeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence            34577899999865431111211123345679999877756666556788999998765322233343336789999998


Q ss_pred             CC-CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCCCceEEEeecCCC
Q 006743           92 DD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIRGKPQPLTVLRACSSS  167 (633)
Q Consensus        92 dg-~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~--DGsV~IWDlrs~~k~v~~l~~~~H~  167 (633)
                      .+ +++++-...+.|.+.|+........+ ..-.....|+++|.+.+|+....  .+.|...++..... .....  ..-
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~--~~~  170 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN--SEI  170 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC--SSC
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEEe--CCC
Confidence            54 45555556789999999765443333 34456788999997666665553  46788888776422 22222  234


Q ss_pred             CCeeEEEEccCCCeEE
Q 006743          168 EAVSSLCWQRAKPVFI  183 (633)
Q Consensus       168 ~~VtsLafsPdg~~La  183 (633)
                      .....|++++++..|.
T Consensus       171 ~~P~Glald~~~~~LY  186 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLY  186 (619)
T ss_dssp             SSEEEEEEETTTTEEE
T ss_pred             CCCcEEEEEccCCEEE
Confidence            5678899988644443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.082  Score=58.53  Aligned_cols=151  Identities=9%  Similarity=0.084  Sum_probs=91.5

Q ss_pred             ccC-CCCEEEEEEC-CCcEEEEECCCCceeEEEeCCC--CCcEEEEEE-------ccCCCeEEEEEeCCC------eEEE
Q 006743            2 YNC-KDEHLASISL-SGDLILHNLASGAKAAELKDPN--EQVLRVLDY-------SRNSRHLLVTAGDDG------TLHL   64 (633)
Q Consensus         2 FSp-dG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~--~~~VssLaf-------Spdg~~lLaSGs~DG------tI~I   64 (633)
                      |+| ++..|+++.. .+.|++.|++++.....+....  ......|+|       +++++.++++-..++      .|.+
T Consensus       146 ~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~  225 (496)
T 3kya_A          146 FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI  225 (496)
T ss_dssp             EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEE
T ss_pred             EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEE
Confidence            566 3445555543 4678889987766554443221  234778999       999984444444332      2666


Q ss_pred             EECCC-CCce----eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC-------CCce-----------e-eEe
Q 006743           65 WDTTG-RSPK----VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG-------SRRP-----------S-SCI  119 (633)
Q Consensus        65 WDl~t-~~~~----v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlr-------tgk~-----------v-~~i  119 (633)
                      ++... +...    ...+... ....+++++| ++.++++-..++.|+.+|+.       ++..           . ..+
T Consensus       226 i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~  304 (496)
T 3kya_A          226 IKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF  304 (496)
T ss_dssp             EECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE
T ss_pred             EecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE
Confidence            66433 1211    0122222 2345788999 56666677788899999997       5543           1 112


Q ss_pred             --eCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCC
Q 006743          120 --TYEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRG  153 (633)
Q Consensus       120 --~h~~~ItsLafSPdG~~LatG-s~DGsV~IWDlrs  153 (633)
                        ........|+|+|+|++|..+ .....|+.+|...
T Consensus       305 ~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          305 TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence              234557899999999965555 4567899876654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.79  E-value=0.11  Score=59.76  Aligned_cols=168  Identities=10%  Similarity=0.073  Sum_probs=104.2

Q ss_pred             EEEEECCCcEEEEECCCCceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-----C
Q 006743            9 LASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-----S   81 (633)
Q Consensus         9 LaSgs~DG~I~IWDl~tgk~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H-----~   81 (633)
                      |..|+.++-|..+|..+++. ..+..  .....|.++...+++.  |..|.. +-|.+||..+..... .....     .
T Consensus       420 lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~  494 (781)
T 3v9f_A          420 LWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKVIH-HYDTSNSQLLE  494 (781)
T ss_dssp             EEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSCCE-EECTTTSSCSC
T ss_pred             EEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeEEe-cccCccccccc
Confidence            44466667788888766543 23321  1345678887777765  566666 568899987765322 11111     3


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      ..|.++...+++++.+ |+.++-|..||.++++......    ....|.++...++|.+. .|+.+|.|..||..+..  
T Consensus       495 ~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-i~T~~Glv~~~d~~~~~--  570 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW-LATGEGLVCFPSARNFD--  570 (781)
T ss_dssp             SCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE-EEETTEEEEESCTTTCC--
T ss_pred             ceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE-EEECCCceEEECCCCCc--
Confidence            6799999988887555 4543347889988765544321    23568899988888754 45557766899987653  


Q ss_pred             eEEEeec-C-CCCCeeEEEEccCCCeEEEe
Q 006743          158 LTVLRAC-S-SSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       158 v~~l~~~-~-H~~~VtsLafsPdg~~Las~  185 (633)
                      +..+... + ....|.++..+++|...+..
T Consensus       571 ~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          571 YQVFQRKEGLPNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             CEEECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred             EEEccccCCCCCceEEEEEECCCCCEEEEc
Confidence            2333211 1 12457788887766655543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.77  E-value=0.51  Score=53.51  Aligned_cols=170  Identities=6%  Similarity=-0.008  Sum_probs=108.9

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |++.++.|+.+. .++.|..+++........+.. .......|++.+.+.+++++-...+.|.+.++.+.... ..+...
T Consensus        44 ~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-~l~~~~  121 (628)
T 4a0p_A           44 FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-VLVWKD  121 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-EEECSS
T ss_pred             EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-EEEeCC
Confidence            566666665554 457788888754433333322 22334568888777767777777889999999876532 223344


Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCc
Q 006743           81 SAPTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQP  157 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k~  157 (633)
                      -....+|++.|....|+...  ..+.|...++...........-.....|++++++..|..+. ..+.|..+|+..... 
T Consensus       122 l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-  200 (628)
T 4a0p_A          122 LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-  200 (628)
T ss_dssp             CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-
Confidence            45679999999554555544  25688888887655444445556789999999877776655 567899999987543 


Q ss_pred             eEEEeecCCCCCeeEEEEcc
Q 006743          158 LTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       158 v~~l~~~~H~~~VtsLafsP  177 (633)
                       +++.  .......++++..
T Consensus       201 -~v~~--~~l~~P~glav~~  217 (628)
T 4a0p_A          201 -EVIA--DDLPHPFGLTQYQ  217 (628)
T ss_dssp             -EEEE--ECCSCEEEEEEET
T ss_pred             -EEee--ccCCCceEEEEEC
Confidence             3333  1233455677654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.037  Score=61.29  Aligned_cols=141  Identities=11%  Similarity=0.047  Sum_probs=87.4

Q ss_pred             EEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEEeccC----CCCeEEEEE-------cCCCCEEEEEeCCC----
Q 006743           40 LRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH----SAPTAGISF-------SSDDKIIASVGLDK----  103 (633)
Q Consensus        40 VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H----~~~VtsLaf-------SPdg~~LaSgS~DG----  103 (633)
                      ...|+|.|. +.+++++-...+.|++.|+.++.  +..+...    ......|+|       ++++++|+++...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            456899983 55455555555778888988776  3333222    235799999       99999777766554    


Q ss_pred             ---eEEEEeCCC-Ccee-----eEeeCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECC-------CCCC-----c----
Q 006743          104 ---KLYTYDPGS-RRPS-----SCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIR-------GKPQ-----P----  157 (633)
Q Consensus       104 ---tVrIWDlrt-gk~v-----~~i~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlr-------s~~k-----~----  157 (633)
                         .|.+++... +...     ..+........++++|+ +.++++-..++.|+.||+.       ++..     +    
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               377776443 2221     23322235567889995 5555566678889999997       4432     0    


Q ss_pred             -eEEEeecCCCCCeeEEEEccCCCeE
Q 006743          158 -LTVLRACSSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       158 -v~~l~~~~H~~~VtsLafsPdg~~L  182 (633)
                       ...+...........|+|+|+|++|
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~l  324 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYA  324 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEE
Confidence             1222222334567899999987643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.71  E-value=0.16  Score=52.14  Aligned_cols=146  Identities=14%  Similarity=0.148  Sum_probs=81.3

Q ss_pred             CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE-ECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 006743           26 GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW-DTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK  104 (633)
Q Consensus        26 gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW-Dl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGt  104 (633)
                      |+.-..+.......+..+++.+++. +++.+ .+|.++.- |-..... ...-......+..+.+.+++..+ .++.+|.
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~tW-~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~  226 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQTAW-EPHNRTTSRRLHNMGFTPDGRLW-MIVNGGK  226 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCSSC-EEEECCSSSCEEEEEECTTSCEE-EEETTTE
T ss_pred             CCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCCce-eECCCCCCCccceeEECCCCCEE-EEeCCce
Confidence            4433334333445677889998876 55544 45555443 3212221 11223455678999999887655 5556788


Q ss_pred             EEEEeCCCCceeeEee-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccC
Q 006743          105 LYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRA  178 (633)
Q Consensus       105 VrIWDlrtgk~v~~i~-----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~-~H~~~VtsLafsPd  178 (633)
                      +++.+...++.-..+.     ....+.++++.+++.+++++. +|.| ++..+.+ +....+... .....+.++.|.++
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~  303 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSP  303 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEET
T ss_pred             EEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECC
Confidence            8877533233222221     224588999998877666554 6766 3444444 223333311 23456778888653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.63  E-value=0.063  Score=58.00  Aligned_cols=150  Identities=8%  Similarity=-0.061  Sum_probs=91.9

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--CCce-eEE
Q 006743            2 YNC-KDEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--RSPK-VSW   76 (633)
Q Consensus         2 FSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~-~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t--~~~~-v~~   76 (633)
                      +++ +|.++++-..++.|+.+|..++..... +.......-..|+|+|+++.++++-...+.|+.++...  .... ...
T Consensus       235 vd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~  314 (433)
T 4hw6_A          235 VHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYI  314 (433)
T ss_dssp             ECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEE
T ss_pred             EeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEE
Confidence            456 555554444667899999877765332 22222233346999999985666666678999988753  2110 111


Q ss_pred             eccC---------------CCCeEEEEE---------cCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-----------
Q 006743           77 LKQH---------------SAPTAGISF---------SSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-----------  121 (633)
Q Consensus        77 l~~H---------------~~~VtsLaf---------SPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h-----------  121 (633)
                      +.+.               -.....+++         .++++++++-...+.|+.+|. ++......+.           
T Consensus       315 ~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG  393 (433)
T 4hw6_A          315 VCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDG  393 (433)
T ss_dssp             EEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCE
T ss_pred             EEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCC
Confidence            1111               123567899         667777777677789999985 4544333321           


Q ss_pred             -------CCCeEEEEEe-cCCCEEEEEEcCCeEEEEECC
Q 006743          122 -------EAPFSSLAFI-DDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus       122 -------~~~ItsLafS-PdG~~LatGs~DGsV~IWDlr  152 (633)
                             -.....|+++ ++|.++++-..++.|+.++++
T Consensus       394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          394 ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                   1236788998 566666555567788887764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.59  E-value=0.0083  Score=69.06  Aligned_cols=151  Identities=10%  Similarity=-0.018  Sum_probs=88.8

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCC----CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLAS----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~t----gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~   76 (633)
                      |++.++.|+.+. ..+.|+.+++..    ......+.. .......|++.+.+.+++++-...+.|.++++.+... ...
T Consensus       413 ~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l  490 (699)
T 1n7d_A          413 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTL  490 (699)
T ss_dssp             EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEE
T ss_pred             cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEE
Confidence            555566665554 346788888764    121111111 1112334677765555666656678999999887652 222


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEE-EEEcCCeEEEEECC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVG-LD-KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILT-AGTSNGRVVFYDIR  152 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS-~D-GtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~La-tGs~DGsV~IWDlr  152 (633)
                      +.........|++.|.+.+|+.+. .. +.|.++++........+ ..-.....|+|+|++..|+ +-...+.|.++|+.
T Consensus       491 ~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          491 FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            232334568899999555444443 23 67888887643322222 2234567899999765555 44556789999997


Q ss_pred             CC
Q 006743          153 GK  154 (633)
Q Consensus       153 s~  154 (633)
                      ..
T Consensus       571 G~  572 (699)
T 1n7d_A          571 GG  572 (699)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.54  E-value=0.084  Score=64.24  Aligned_cols=178  Identities=7%  Similarity=0.024  Sum_probs=111.9

Q ss_pred             CcEEEEECCCCceeEEEeCCCCCcEEEEEE---ccCCCeEEEEEe----------CCCeEEEEECCCCCceeEEeccCCC
Q 006743           16 GDLILHNLASGAKAAELKDPNEQVLRVLDY---SRNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQHSA   82 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~~~~~VssLaf---Spdg~~lLaSGs----------~DGtI~IWDl~t~~~~v~~l~~H~~   82 (633)
                      +.|++.|..+.+.+..+.-...+.+.+++.   ..+...+|+.|.          ..|.|++|++...+.....-....+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            468899988888887776555666666553   333334788776          3578999999755433333344568


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l  161 (633)
                      +|++++-- +|+ |++|- ..+|++||+...+.+.. ..+...|..+...-.+++|++|..-..|.++..+.....+..+
T Consensus       887 ~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          887 AVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             CEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             cCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            89988744 464 44433 46899999987654442 1222223333333457899999988888776655443444555


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ....+..++++++|-.+             ..++.+..++.+.+....
T Consensus       964 a~D~~~~~vta~~~ld~-------------~t~l~aD~~gNl~vl~~~  998 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDD-------------DNFLGAENAFNLFVCQKD  998 (1158)
T ss_dssp             EECCSCBCEEEEEEEET-------------TEEEEEETTSEEEEEEEC
T ss_pred             EeecccccEEEEEEEcc-------------CcEEEEcCCCcEEEEecC
Confidence            54456778888887543             234555667777776553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.34  E-value=0.0055  Score=70.54  Aligned_cols=180  Identities=7%  Similarity=-0.053  Sum_probs=104.8

Q ss_pred             CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---CceeEEeccCCCCeEEEEEc
Q 006743           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR---SPKVSWLKQHSAPTAGISFS   90 (633)
Q Consensus        14 ~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~---~~~v~~l~~H~~~VtsLafS   90 (633)
                      ..+.|++.++...+....+..  ...+..|+|.+.+..++++-...+.|+.+++.+.   ......+.........|++.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             CccceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            345778888766554433332  2234568999877655555556789999998751   11122222222345678888


Q ss_pred             C-CCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEc-C-CeEEEEECCCCCCceEEEeecCC
Q 006743           91 S-DDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS-N-GRVVFYDIRGKPQPLTVLRACSS  166 (633)
Q Consensus        91 P-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~-D-GsV~IWDlrs~~k~v~~l~~~~H  166 (633)
                      + .++++++-...+.|.++|+........+. .......++++|.+.+|+.... . +.|+++++.....  ..+.. ..
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~-~~  538 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT-EN  538 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESC-SS
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEe-CC
Confidence            6 45555555567789999987655444443 2345678899997655554432 3 7888888875422  12211 12


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       167 ~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      -.....|+|+|++.           .++++-...+.|.++|+.
T Consensus       539 l~~PnGlavd~~~~-----------~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          539 IQWPNGITLDLLSG-----------RLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             CSSCCCEEECTTTC-----------CEEEEETTTTEEEEECSS
T ss_pred             CCCccEEEEeccCC-----------EEEEEecCCCeEEEEccC
Confidence            34567788988633           344444556677777763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.23  E-value=0.25  Score=52.30  Aligned_cols=138  Identities=15%  Similarity=0.269  Sum_probs=91.9

Q ss_pred             CCcEEEEECC--CCceeEEEeCC-----CC-CcEEEEEE--ccC-CCeEEEEEeCCCeEEEEECCC---CC---ceeEEe
Q 006743           15 SGDLILHNLA--SGAKAAELKDP-----NE-QVLRVLDY--SRN-SRHLLVTAGDDGTLHLWDTTG---RS---PKVSWL   77 (633)
Q Consensus        15 DG~I~IWDl~--tgk~v~~~~~~-----~~-~~VssLaf--Spd-g~~lLaSGs~DGtI~IWDl~t---~~---~~v~~l   77 (633)
                      +++|.+|++.  ++ .+..+...     .. ..+..+|+  ++. +..+++....+|.+..|++..   +.   ..++.+
T Consensus        98 ~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            5789999763  33 34444221     11 34455677  564 445688888899999999832   21   123444


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-----CCceeeEee---CCCCeEEEEEe--cCCC-EEEEEE-cCCe
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-----SRRPSSCIT---YEAPFSSLAFI--DDDW-ILTAGT-SNGR  145 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr-----tgk~v~~i~---h~~~ItsLafS--PdG~-~LatGs-~DGs  145 (633)
                      . ....+..|...+....|+.+-++.-|..||.+     +++.+..+.   ....+..|++-  ++++ +|++.+ .+..
T Consensus       177 ~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 K-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             E-CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             c-CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            3 34678999999988899999999888888865     344555543   23568888884  4555 666665 6789


Q ss_pred             EEEEECCCC
Q 006743          146 VVFYDIRGK  154 (633)
Q Consensus       146 V~IWDlrs~  154 (633)
                      +.+||....
T Consensus       256 ~~Vydr~~~  264 (355)
T 3amr_A          256 YAIYDRQGK  264 (355)
T ss_dssp             EEEEESSTT
T ss_pred             EEEEECCCC
Confidence            999999743

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.20  E-value=0.38  Score=54.40  Aligned_cols=152  Identities=8%  Similarity=-0.033  Sum_probs=95.8

Q ss_pred             ccCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |++.++.|+.+.. .+.|..+++........+....-.....|++.+.+++++++-...+.|.+.++.+.... ..+...
T Consensus        47 ~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~-~l~~~~  125 (619)
T 3s94_A           47 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQE  125 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSS
T ss_pred             EEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE-EEEeCC
Confidence            5565666665543 46677777654422222222222456779999877767777777899999999876532 223244


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGK  154 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~--DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~  154 (633)
                      -....+|++.|.+.+|+....  .+.|...++......... ..-.....+++++++..|..+. ..+.|..+|+...
T Consensus       126 l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          126 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            456789999996555555443  467888887644333333 2445688999999776666554 4678999998764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.16  E-value=0.25  Score=53.80  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=91.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEEeCCC---CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC----------
Q 006743            5 KDEHLASISLSGDLILHNLASGAKAAELKDPN---EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS----------   71 (633)
Q Consensus         5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~---~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~----------   71 (633)
                      +|..++.+ .++.|++.++.+...-+.+...+   ...+..+..+|+|+ +||.. .+..|.|-.+..+.          
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCccccccc
Confidence            44444444 35678888877554444554431   22455689999998 55555 45789999886221          


Q ss_pred             -ceeEEecc------CCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCC--ceeeEe-------e---CCCCeEEEE
Q 006743           72 -PKVSWLKQ------HSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSR--RPSSCI-------T---YEAPFSSLA  129 (633)
Q Consensus        72 -~~v~~l~~------H~~~VtsLafSP---dg~~LaSgS~DGtVrIWDlrtg--k~v~~i-------~---h~~~ItsLa  129 (633)
                       .....+.-      ...+|..+.|+|   .+..|++-..|+.|++||+...  ++. .+       +   ....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence             11112221      246799999999   5679999999999999999852  222 22       1   225688899


Q ss_pred             EecCCCEEEEEE--cCCeEEEE
Q 006743          130 FIDDDWILTAGT--SNGRVVFY  149 (633)
Q Consensus       130 fSPdG~~LatGs--~DGsV~IW  149 (633)
                      |..++-.|.+..  ..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            988877666655  66777654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.99  E-value=0.26  Score=50.65  Aligned_cols=176  Identities=13%  Similarity=0.080  Sum_probs=101.8

Q ss_pred             ccCCCCEEEEEECC--------------CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEE---eCCCeEEE
Q 006743            2 YNCKDEHLASISLS--------------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA---GDDGTLHL   64 (633)
Q Consensus         2 FSpdG~~LaSgs~D--------------G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSG---s~DGtI~I   64 (633)
                      ++++|++|+-+...              ..|+..++..++.. .+..   ..  +..|+++++.++++-   ..+..|+.
T Consensus        60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            56788888766543              36777787655433 3332   11  136777888544444   23455666


Q ss_pred             EECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743           65 WDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        65 WDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D  143 (633)
                      .++.+..  ...+..+..    ..|+++++.|+-.+. ...|.+.++..+....++.  +... ..+.|++.+|+-...+
T Consensus       134 ~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          134 IRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGG
T ss_pred             EECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcC
Confidence            6776554  334444433    345677888776665 6789999988766544433  2333 3466989888876654


Q ss_pred             --CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743          144 --GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (633)
Q Consensus       144 --GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg  201 (633)
                        ..|..-++.....  ..+.    ...+  ..|+|++.+|..+.... ...|.....||
T Consensus       205 ~~~~I~~~~ldG~~~--~~Lt----~~~~--~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG  255 (302)
T 3s25_A          205 RDNAIVHVNINNPNP--VVLT----EANI--EHYNVYGSLIFYQRGGD-NPALCVVKNDG  255 (302)
T ss_dssp             GTTEEEEECSSSCCC--EECS----CSCE--EEEEEETTEEEEEECSS-SCEEEEEETTS
T ss_pred             CCcEEEEEECCCCCe--EEEe----CCCc--ceEEECCCEEEEEECCC-CcEEEEEECCC
Confidence              3677777766532  3332    1233  34788888887653322 24455555555

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.98  E-value=0.55  Score=48.87  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCcee--EEEe--CCCCCcEEEEEEccC---CCeEEEEEeCC-----CeEEEEECC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKA--AELK--DPNEQVLRVLDYSRN---SRHLLVTAGDD-----GTLHLWDTT   68 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v--~~~~--~~~~~~VssLafSpd---g~~lLaSGs~D-----GtI~IWDl~   68 (633)
                      +|.|+|+++ ++..+|.|.+++  +++..  ..+.  .........|+|+|+   +..++++-..+     +.|..|+..
T Consensus        37 a~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~  113 (352)
T 2ism_A           37 AFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL  113 (352)
T ss_dssp             EECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC
T ss_pred             EEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC
Confidence            478999844 556779999998  44421  1121  112345678999998   55355544432     678888876


Q ss_pred             CCC-----ceeEEec---cCCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCC------------ce
Q 006743           69 GRS-----PKVSWLK---QHSAPTAGISFSSDDKIIASVGL-------------DKKLYTYDPGSR------------RP  115 (633)
Q Consensus        69 t~~-----~~v~~l~---~H~~~VtsLafSPdg~~LaSgS~-------------DGtVrIWDlrtg------------k~  115 (633)
                      ...     ..+..+.   ........|+|.|+|.++++.+.             .+.|..+|....            ..
T Consensus       114 ~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~  193 (352)
T 2ism_A          114 GERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGAR  193 (352)
T ss_dssp             SSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSC
T ss_pred             CCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCC
Confidence            432     1111122   11123468999999977666542             256777776531            01


Q ss_pred             eeEeeC-CCCeEEEEEec-CCCEEEEEEcCC
Q 006743          116 SSCITY-EAPFSSLAFID-DDWILTAGTSNG  144 (633)
Q Consensus       116 v~~i~h-~~~ItsLafSP-dG~~LatGs~DG  144 (633)
                      ...+.. -.....++|+| ++.++++-...+
T Consensus       194 ~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~  224 (352)
T 2ism_A          194 PEVYSLGHRNPQGLAWHPKTGELFSSEHGPS  224 (352)
T ss_dssp             TTEEEECCSEECCCEECTTTCCEEEEEECC-
T ss_pred             ccEEEEcCCCcccEEEECCCCCEEEEEcCCC
Confidence            111211 12366789999 666555544333

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.80  E-value=0.54  Score=46.72  Aligned_cols=144  Identities=15%  Similarity=0.129  Sum_probs=77.2

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCc---eeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCC
Q 006743            5 KDEHLASISLS-----GDLILHNLASGA---KAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGR   70 (633)
Q Consensus         5 dG~~LaSgs~D-----G~I~IWDl~tgk---~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~D-----GtI~IWDl~t~   70 (633)
                      +++.++.|+.+     ..+.+||+.+.+   -...-.... .....++.+  ++ .+++.|+.+     ..+.+||..+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCC
Confidence            45566667654     468999988765   222211111 111122222  44 377777654     36889998776


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeEee--CC-CCeEEEEEecCCCEEEEEEc
Q 006743           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YE-APFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrtgk~v~~i~--h~-~~ItsLafSPdG~~LatGs~  142 (633)
                      +.....-......-.+++.. ++++++.|+.+     ..+.+||+.+.+-...-.  .. ....++.+  ++++++.|+.
T Consensus       139 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  215 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             eEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence            53211111111111122222 57777777765     368999998876543321  11 11222222  5677777776


Q ss_pred             C-----CeEEEEECCCC
Q 006743          143 N-----GRVVFYDIRGK  154 (633)
Q Consensus       143 D-----GsV~IWDlrs~  154 (633)
                      +     ..|.+||+.+.
T Consensus       216 ~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             CSSSBCCCEEEEETTTT
T ss_pred             CCCcccceEEEEeCCCC
Confidence            4     46899999875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.78  E-value=0.26  Score=50.63  Aligned_cols=143  Identities=12%  Similarity=0.092  Sum_probs=82.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---   78 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~---   78 (633)
                      +.+++.+++++ .+|.|+.-+-..++.-..+.......+..+.+.+++.  ++.++.+|.+++++...++. -..+.   
T Consensus       170 ~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~G~t-W~~~~~~~  245 (327)
T 2xbg_A          170 RSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDNSEN-WGELLSPL  245 (327)
T ss_dssp             ECTTSCEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTEEEE-ECCCBCTT
T ss_pred             EcCCCcEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCCCCe-eEeccCCc
Confidence            45666666555 4555544331113333333333445677888988876  44566788888875332210 00011   


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee----CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           79 -QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        79 -~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~----h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                       .+...+.++++.+++.+++++. ++.| ++....++.-..+.    ....+.++.|.+++ .+++++.+|.|.-++-
T Consensus       246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence             1224588999998777666554 6766 34444454433332    24568889887554 5667778898887764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.77  E-value=0.57  Score=50.95  Aligned_cols=128  Identities=13%  Similarity=0.178  Sum_probs=82.4

Q ss_pred             ccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC----CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------
Q 006743           46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH----SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-------  114 (633)
Q Consensus        46 Spdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H----~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-------  114 (633)
                      +.++.. ++. ..++.||..++.... ..+.+..-    -..|..+..+|+|++||..+. ..|.|..+..+.       
T Consensus        29 ~~n~t~-i~~-a~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           29 SQNGTR-IVF-IQDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             ETTTTE-EEE-EETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred             EcCCCE-EEE-EECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence            344543 333 234788888876333 23333322    236888999999999998864 578998886321       


Q ss_pred             -----eeeEee-------CCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCC-CCCceEEEee-------cCCCCCee
Q 006743          115 -----PSSCIT-------YEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRG-KPQPLTVLRA-------CSSSEAVS  171 (633)
Q Consensus       115 -----~v~~i~-------h~~~ItsLafSPd---G~~LatGs~DGsV~IWDlrs-~~k~v~~l~~-------~~H~~~Vt  171 (633)
                           ..+.+.       ...+|..+.|+|.   +..|++-..|+.|++||+.. ...|. .+..       ......|.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                 011221       2467999999994   57899999999999999986 33344 3321       12225677


Q ss_pred             EEEEccC
Q 006743          172 SLCWQRA  178 (633)
Q Consensus       172 sLafsPd  178 (633)
                      +++|..+
T Consensus       184 S~~Fg~~  190 (452)
T 3pbp_A          184 DLEFSKD  190 (452)
T ss_dssp             EEEECTT
T ss_pred             EEEEcCC
Confidence            7787764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.74  E-value=0.52  Score=49.85  Aligned_cols=161  Identities=14%  Similarity=0.183  Sum_probs=95.8

Q ss_pred             CCcEEEEECCCC-c---eeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----------------CCCeEEEEECCCCCce
Q 006743           15 SGDLILHNLASG-A---KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----------------DDGTLHLWDTTGRSPK   73 (633)
Q Consensus        15 DG~I~IWDl~tg-k---~v~~~~~~~~~~VssLafSpdg~~lLaSGs-----------------~DGtI~IWDl~t~~~~   73 (633)
                      +..|.+|++... .   .+..+.+..-...+++++.++|+ ++++..                 ..|.|+.||.  .+  
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--  212 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--  212 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce--
Confidence            356777766543 2   33445544455678899999987 555543                 1244555554  33  


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Ccee--eEeeCCCCeEEEEEec-CCCEEEEEEcC-CeEE
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGS-RRPS--SCITYEAPFSSLAFID-DDWILTAGTSN-GRVV  147 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrt-gk~v--~~i~h~~~ItsLafSP-dG~~LatGs~D-GsV~  147 (633)
                      ++.+...-..-+.++|+||++.|+.+. ..+.|+.||+.. +...  ..+...+....+++++ +|++.+++..+ +.|.
T Consensus       213 ~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~  292 (355)
T 3sre_A          213 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIF  292 (355)
T ss_dssp             CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHH
T ss_pred             EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEE
Confidence            233333345679999999998877765 567999999863 3322  2334456788899999 59888777655 4566


Q ss_pred             EEECCCCCCceEEEeec---CCCCCeeEEEEccCCCeE
Q 006743          148 FYDIRGKPQPLTVLRAC---SSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~---~H~~~VtsLafsPdg~~L  182 (633)
                      .||.... .+..+++..   +....|.++ |..+|+.+
T Consensus       293 ~~~P~~~-~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l  328 (355)
T 3sre_A          293 FYDAENP-PGSEVLRIQDILSEEPKVTVV-YAENGTVL  328 (355)
T ss_dssp             SCCTTSC-CCEEEEEEECTTSSSCEEEEE-EEECSSSC
T ss_pred             EECCCCC-CCCEEEEEEccCCCCcEEEEE-EEcCCCEE
Confidence            6666531 222222211   123334444 55577654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.54  E-value=3.6  Score=45.00  Aligned_cols=167  Identities=14%  Similarity=0.142  Sum_probs=103.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      .||..+.||.-. ...+.|||+++...++.+.- ..+++. -+|-.+.  .|+... +..|+-|++.+...+++.+..|.
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~Vvf-WkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTF-WKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCE-EEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceE-EEecCCC--eEEEEc-CCeeEEecccCCCCchhheecch
Confidence            367777777665 67899999999998888874 344544 4776554  355444 47899999977655566665553


Q ss_pred             ----CCeEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCc------------------------------------
Q 006743           82 ----APTAGISFSSDDKIIASVGL-------DKKLYTYDPGSRR------------------------------------  114 (633)
Q Consensus        82 ----~~VtsLafSPdg~~LaSgS~-------DGtVrIWDlrtgk------------------------------------  114 (633)
                          ..|..-..+++.++++..+-       .|.+.+|..+.+.                                    
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~  226 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence                45666666777777664431       1234444432211                                    


Q ss_pred             eeeEe---------------------e---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCe
Q 006743          115 PSSCI---------------------T---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAV  170 (633)
Q Consensus       115 ~v~~i---------------------~---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~V  170 (633)
                      .++.+                     .   ..+-..++..++....+..-+.-|.|++||+.++... ..-+  -....|
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i-~~nr--Is~~~i  303 (494)
T 1bpo_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNR--ISGETI  303 (494)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEE--CCSSCE
T ss_pred             EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee-eeec--ccCCce
Confidence            00000                     0   1233456777777788899999999999999998432 2222  334455


Q ss_pred             eEEEEcc
Q 006743          171 SSLCWQR  177 (633)
Q Consensus       171 tsLafsP  177 (633)
                      ..-+-+.
T Consensus       304 F~t~~~~  310 (494)
T 1bpo_A          304 FVTAPHE  310 (494)
T ss_dssp             EEEEEET
T ss_pred             EEecccC
Confidence            4444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.44  E-value=0.46  Score=49.47  Aligned_cols=182  Identities=13%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             CccCC---CCEEEEEEC-C-----CcEEEEECCCCc-----ee-EEEe--CCCCCcEEEEEEccCCCeEEEEEeC-----
Q 006743            1 MYNCK---DEHLASISL-S-----GDLILHNLASGA-----KA-AELK--DPNEQVLRVLDYSRNSRHLLVTAGD-----   58 (633)
Q Consensus         1 AFSpd---G~~LaSgs~-D-----G~I~IWDl~tgk-----~v-~~~~--~~~~~~VssLafSpdg~~lLaSGs~-----   58 (633)
                      +|+|+   +.+|+++.. .     +.|..|+...+.     .+ ..+.  .........|+|.|+|. ++++.+.     
T Consensus        81 a~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~  159 (352)
T 2ism_A           81 ALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERE  159 (352)
T ss_dssp             EECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGG
T ss_pred             EECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCc
Confidence            36676   555555433 2     678888876432     11 1233  11111224689999996 5555332     


Q ss_pred             --------CCeEEEEECCCC------------CceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCe--------EEEEe
Q 006743           59 --------DGTLHLWDTTGR------------SPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKK--------LYTYD  109 (633)
Q Consensus        59 --------DGtI~IWDl~t~------------~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGt--------VrIWD  109 (633)
                              .|.|.-++..+.            ........+| .....++|+| ++.++++-...+.        |.+..
T Consensus       160 ~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~  238 (352)
T 2ism_A          160 LAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV  238 (352)
T ss_dssp             GGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC
T ss_pred             cccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec
Confidence                    256766666541            0111222334 3367889999 6665555433332        33332


Q ss_pred             CCC----------------CceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce---EEEeecCCCCCe
Q 006743          110 PGS----------------RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL---TVLRACSSSEAV  170 (633)
Q Consensus       110 lrt----------------gk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v---~~l~~~~H~~~V  170 (633)
                      ...                ..++..+.+......++| .+|..+++.-..+.|...++......+   ...........+
T Consensus       239 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp  317 (352)
T 2ism_A          239 PGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRL  317 (352)
T ss_dssp             TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCE
T ss_pred             cCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCe
Confidence            211                012222223345667777 466666666666788888876543211   011111223678


Q ss_pred             eEEEEccCCCeEEEe
Q 006743          171 SSLCWQRAKPVFIDE  185 (633)
Q Consensus       171 tsLafsPdg~~Las~  185 (633)
                      ..+++.|+|...++.
T Consensus       318 ~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          318 REVQVGPDGALYVTT  332 (352)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             eEEEECCCCcEEEEE
Confidence            999999987655554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.34  E-value=0.55  Score=46.90  Aligned_cols=143  Identities=17%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             CCCEEEEEECC----CcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 006743            5 KDEHLASISLS----GDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK   73 (633)
Q Consensus         5 dG~~LaSgs~D----G~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~D------GtI~IWDl~t~~~~   73 (633)
                      +++.++.|+.+    ..+.+||+.+++-...-.... .....++.+  ++. +++.|+.+      ..+.+||..+....
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            45566666654    578899988765432211111 111122222  443 77777765      46899999876532


Q ss_pred             eEEeccC--CCCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEE
Q 006743           74 VSWLKQH--SAPTAGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAG  140 (633)
Q Consensus        74 v~~l~~H--~~~VtsLafSPdg~~LaSgS~---------DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatG  140 (633)
                        .+...  ...-.+++.. ++++++.|+.         -..+.+||+.+.+-...-.  ....-.+++.. ++++++.|
T Consensus       132 --~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G  207 (306)
T 3ii7_A          132 --TKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVG  207 (306)
T ss_dssp             --EECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred             --eCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEe
Confidence              12111  1111122222 5667777664         3458899998875443322  11111122222 56777777


Q ss_pred             EcC-----CeEEEEECCCC
Q 006743          141 TSN-----GRVVFYDIRGK  154 (633)
Q Consensus       141 s~D-----GsV~IWDlrs~  154 (633)
                      +.+     ..|.+||+.+.
T Consensus       208 G~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          208 GQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             CEETTEEBCCEEEEETTTT
T ss_pred             CCCCCCCCceEEEeeCCCC
Confidence            654     35899999875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.24  E-value=0.65  Score=46.23  Aligned_cols=142  Identities=11%  Similarity=0.108  Sum_probs=75.0

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCce
Q 006743            5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSPK   73 (633)
Q Consensus         5 dG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~DG-----tI~IWDl~t~~~~   73 (633)
                      +++.++.|+.+     ..+.+||..+.+-...-.... .....++.+  ++ .+++.|+.++     .+.+||..+....
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            45556666644     358889987765332211111 111122222  34 3777777653     5888998776532


Q ss_pred             eEEecc--CCCCeEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCceeeEee--CC-CCeEEEEEecCCCEEEEEE
Q 006743           74 VSWLKQ--HSAPTAGISFSSDDKIIASVGLD-------KKLYTYDPGSRRPSSCIT--YE-APFSSLAFIDDDWILTAGT  141 (633)
Q Consensus        74 v~~l~~--H~~~VtsLafSPdg~~LaSgS~D-------GtVrIWDlrtgk~v~~i~--h~-~~ItsLafSPdG~~LatGs  141 (633)
                        .+..  ....-.+++.. ++++++.|+.+       ..+.+||+.+.+-...-.  .. ....++.+  ++++++.|+
T Consensus       138 --~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  212 (302)
T 2xn4_A          138 --HVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGG  212 (302)
T ss_dssp             --EECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             --ecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECC
Confidence              2211  11111122222 56677776643       358999998875443321  11 11222222  567777877


Q ss_pred             cC-----CeEEEEECCCC
Q 006743          142 SN-----GRVVFYDIRGK  154 (633)
Q Consensus       142 ~D-----GsV~IWDlrs~  154 (633)
                      .+     ..|.+||+.+.
T Consensus       213 ~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             BSSSSBCCCEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCC
Confidence            65     36899999875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.91  E-value=2.6  Score=43.87  Aligned_cols=143  Identities=15%  Similarity=0.206  Sum_probs=78.8

Q ss_pred             EEEEEccCCCeEEEEEeC-------------CCeEEEEECCCCC-------ceeEEeccCCCCeEEEEEcC-CCCEEEEE
Q 006743           41 RVLDYSRNSRHLLVTAGD-------------DGTLHLWDTTGRS-------PKVSWLKQHSAPTAGISFSS-DDKIIASV   99 (633)
Q Consensus        41 ssLafSpdg~~lLaSGs~-------------DGtI~IWDl~t~~-------~~v~~l~~H~~~VtsLafSP-dg~~LaSg   99 (633)
                      ..|+|.|+|. ++++.+.             .|.|..++..+.-       .......+|. ....++|+| +++++++-
T Consensus       138 ~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          138 GRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred             ceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence            4589999997 5555332             2566666665430       0112233443 357899999 66655553


Q ss_pred             eCCC---eEEEEeCCC--------C--------ceeeEe-eCCCCeEEEEEe-------cCCCEEEEEEcCCeEEEEECC
Q 006743          100 GLDK---KLYTYDPGS--------R--------RPSSCI-TYEAPFSSLAFI-------DDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus       100 S~DG---tVrIWDlrt--------g--------k~v~~i-~h~~~ItsLafS-------PdG~~LatGs~DGsV~IWDlr  152 (633)
                      ...+   .|.+.....        +        .++..+ ........++|.       .+|.++++.-..+.|...++.
T Consensus       216 ~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~  295 (354)
T 3a9g_A          216 HGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG  295 (354)
T ss_dssp             CCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence            3222   244332211        0        122222 223467788883       467777766667889998887


Q ss_pred             CCCCceEEEeec-CCCCCeeEEEEccCCCeEEEe
Q 006743          153 GKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       153 s~~k~v~~l~~~-~H~~~VtsLafsPdg~~Las~  185 (633)
                      ............ +....+..+++.|+|...++.
T Consensus       296 ~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          296 DNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             GGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             CCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            532222111111 224678999999987555443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.50  E-value=1.9  Score=44.21  Aligned_cols=161  Identities=12%  Similarity=0.107  Sum_probs=94.3

Q ss_pred             ccCCCCEEEEEE--CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC-------------CeEEEEE
Q 006743            2 YNCKDEHLASIS--LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-------------GTLHLWD   66 (633)
Q Consensus         2 FSpdG~~LaSgs--~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D-------------GtI~IWD   66 (633)
                      |+.+|++|+...  .++.|+..+. +|.....+..   ..  +--++++++.+.++...+             ..|+..+
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~-dg~~~~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNI-DGSNIHKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEET-TSCSCEEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcC-CCCCCEEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            455677776654  2566777775 4444444442   12  235688888666665544             4678888


Q ss_pred             CCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc
Q 006743           67 TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG----LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        67 l~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS----~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~  142 (633)
                      +.+.+.  ..+...  .  +..|++++++|+-..    .+..|+..++.......+..+..    ..++++++.|+-.+.
T Consensus        95 ~dg~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~  164 (302)
T 3s25_A           95 RNGHGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             TTSCCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECT
T ss_pred             CCCCcc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeC
Confidence            877762  233222  1  236777888888776    34467777877554444444332    456778888886654


Q ss_pred             -CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          143 -NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       143 -DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                       ...|++.++....+  +.+.  .  +... ..+.|++.+|+..
T Consensus       165 g~~~Iy~~~l~g~~~--~~l~--~--~~~~-~~~~P~g~~iy~t  201 (302)
T 3s25_A          165 KNGQLYRYDTASQSE--ALFY--D--CNCY-KPVVLDDTNVYYM  201 (302)
T ss_dssp             TTCCEEEEETTTTEE--EEEE--C--SCEE-EEEEEETTEEEEE
T ss_pred             CCceEEEEECCCCCE--EEEe--C--CCcc-ceeeecCCEEEEE
Confidence             67788888876532  2222  1  2222 3456887777655

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.44  E-value=0.56  Score=46.61  Aligned_cols=141  Identities=9%  Similarity=0.025  Sum_probs=76.7

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCce
Q 006743            5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSPK   73 (633)
Q Consensus         5 dG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~D-----GtI~IWDl~t~~~~   73 (633)
                      +++.++.|+.+     ..+.+||+.+.+-...-.... .....++.+  ++. +++.|+.+     ..+.+||..+....
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEE
Confidence            45556666543     368899987765332211111 111122222  444 77777755     45899999876532


Q ss_pred             eEEeccCC--C-CeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeEee--CC-CCeEEEEEecCCCEEEEEEc
Q 006743           74 VSWLKQHS--A-PTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YE-APFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        74 v~~l~~H~--~-~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrtgk~v~~i~--h~-~~ItsLafSPdG~~LatGs~  142 (633)
                        .+....  . ...++.+  ++++++.|+.+     ..|.+||+.+.+-...-.  .. ....++.+  ++++++.|+.
T Consensus       189 --~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  262 (301)
T 2vpj_A          189 --NVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGY  262 (301)
T ss_dssp             --EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             --eCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCc
Confidence              221111  1 1122222  56777777764     468999998876543321  11 11222222  6777777776


Q ss_pred             C-----CeEEEEECCCC
Q 006743          143 N-----GRVVFYDIRGK  154 (633)
Q Consensus       143 D-----GsV~IWDlrs~  154 (633)
                      +     ..|.+||+++.
T Consensus       263 ~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          263 DGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CSSSBEEEEEEEETTTT
T ss_pred             CCCcccccEEEEcCCCC
Confidence            5     35888998875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.33  E-value=0.58  Score=46.62  Aligned_cols=145  Identities=16%  Similarity=0.137  Sum_probs=76.0

Q ss_pred             CCCEEEEEECCC-----cEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCC-------CeEEEEECCCCC
Q 006743            5 KDEHLASISLSG-----DLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDD-------GTLHLWDTTGRS   71 (633)
Q Consensus         5 dG~~LaSgs~DG-----~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~D-------GtI~IWDl~t~~   71 (633)
                      +++.++.|+.++     .+.+||+.+.+-...-.... .....++.+  ++. +++.|+.+       ..+.+||..+..
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            456666777553     57888987765332211111 111122222  343 67776643       358899998765


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeEeeC--CCCeEEEEEecCCCEEEEEEcCC
Q 006743           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTSNG  144 (633)
Q Consensus        72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrtgk~v~~i~h--~~~ItsLafSPdG~~LatGs~DG  144 (633)
                      .....-......-.+++.. ++++++.|+.+     ..+.+||+.+.+-...-..  ...-.+++. -++++++.|+.++
T Consensus       185 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~  262 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDG  262 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCS
T ss_pred             EEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCC
Confidence            3211100111111122222 57777787764     3699999988754433221  111111222 2677777887654


Q ss_pred             -----eEEEEECCCC
Q 006743          145 -----RVVFYDIRGK  154 (633)
Q Consensus       145 -----sV~IWDlrs~  154 (633)
                           .|.+||+.+.
T Consensus       263 ~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          263 SCNLASVEYYNPTTD  277 (302)
T ss_dssp             SSBCCCEEEEETTTT
T ss_pred             CcccccEEEEcCCCC
Confidence                 4889998875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.32  E-value=1  Score=47.04  Aligned_cols=143  Identities=14%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe---ccCCCCeEEEEEcCC---CCEEEEEeC----C----C
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL---KQHSAPTAGISFSSD---DKIIASVGL----D----K  103 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l---~~H~~~VtsLafSPd---g~~LaSgS~----D----G  103 (633)
                      .....|+|.|+++  |+.+..+|.|+++|.... ..+..+   .........|+|+|+   +..|+++..    +    .
T Consensus        29 ~~P~~ia~~pdG~--l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGGR--YLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETTE--EEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCCe--EEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            3456799999986  555567799999974332 122221   122356899999997   455554433    3    5


Q ss_pred             eEEEEeCCCC--c---eeeE---ee--CCCCeEEEEEecCCCEEEEEEc-------------CCeEEEEECCCCC---C-
Q 006743          104 KLYTYDPGSR--R---PSSC---IT--YEAPFSSLAFIDDDWILTAGTS-------------NGRVVFYDIRGKP---Q-  156 (633)
Q Consensus       104 tVrIWDlrtg--k---~v~~---i~--h~~~ItsLafSPdG~~LatGs~-------------DGsV~IWDlrs~~---k-  156 (633)
                      .|..|+....  .   ....   +.  .......|+|.|||.+.++.+.             .|.|.-+|....-   . 
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6888887654  1   1111   22  1223567999999986665432             2567767665420   0 


Q ss_pred             --ceEEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 006743          157 --PLTVLRACSSSEAVSSLCWQR-AKPVFIDE  185 (633)
Q Consensus       157 --~v~~l~~~~H~~~VtsLafsP-dg~~Las~  185 (633)
                        ...++. .++. ....++|+| ++...++.
T Consensus       186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             STTCCEEE-ECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCcEEE-EccC-CcceEEEeCCCCCEEEEe
Confidence              012221 2443 356799999 56655554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.27  E-value=1.1  Score=44.80  Aligned_cols=135  Identities=10%  Similarity=0.055  Sum_probs=81.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCc------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            6 DEHLASISLSGDLILHNLASGA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      ...|++...| +|++=...++.      ....+-...-..+.+++|+|++. +.++  .+|.++-.+..+...  ..+.+
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~--~~W~~   77 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDN--DNWMG   77 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTT--CCHHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCc--ccccc
Confidence            3456666777 66665555544      22333321123566899999887 4444  778776666544221  11111


Q ss_pred             CCCCe--------EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee------Eee--CCCCeEEEEEecCCCEEEEEEcC
Q 006743           80 HSAPT--------AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS------CIT--YEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus        80 H~~~V--------tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~------~i~--h~~~ItsLafSPdG~~LatGs~D  143 (633)
                      -...|        .++.|.|++.+.++  .||.|+-++.-+.....      .+.  .=..+.+|.+.|+|.+.++.  |
T Consensus        78 s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d  153 (236)
T 1tl2_A           78 RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G  153 (236)
T ss_dssp             HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred             cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence            12223        77889999988877  56999888864422211      111  11457999999999887777  7


Q ss_pred             CeEEEEE
Q 006743          144 GRVVFYD  150 (633)
Q Consensus       144 GsV~IWD  150 (633)
                      +.++-+.
T Consensus       154 g~lyr~~  160 (236)
T 1tl2_A          154 QQFYKAL  160 (236)
T ss_dssp             TEEEEEC
T ss_pred             CcEEecC
Confidence            8765433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.10  E-value=1.5  Score=47.67  Aligned_cols=101  Identities=10%  Similarity=0.185  Sum_probs=57.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE--EEeCC-----CCCcEEEEEEccC---CCeEEEEEeC------------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAA--ELKDP-----NEQVLRVLDYSRN---SRHLLVTAGD------------   58 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~--~~~~~-----~~~~VssLafSpd---g~~lLaSGs~------------   58 (633)
                      +|.|+|+++++--..+.|++++..+++...  .+...     ....+..|+|+|+   +..++++-+.            
T Consensus        33 a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~  112 (454)
T 1cru_A           33 LWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPN  112 (454)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCE
T ss_pred             EEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccccc
Confidence            477899866654333479988865555322  22210     1344567999995   5434444432            


Q ss_pred             CCeEEEEECCCCC-------ceeEEec-cCCCCeEEEEEcCCCCEEEEEeC
Q 006743           59 DGTLHLWDTTGRS-------PKVSWLK-QHSAPTAGISFSSDDKIIASVGL  101 (633)
Q Consensus        59 DGtI~IWDl~t~~-------~~v~~l~-~H~~~VtsLafSPdg~~LaSgS~  101 (633)
                      ...|.-|+.....       ..+..+. ........|+|.|||+++++.+.
T Consensus       113 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          113 QTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            2356666654321       1111121 12235789999999998877664

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.98  E-value=13  Score=45.06  Aligned_cols=147  Identities=12%  Similarity=0.072  Sum_probs=90.3

Q ss_pred             ccCCCCEEEEEECC---------CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743            2 YNCKDEHLASISLS---------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         2 FSpdG~~LaSgs~D---------G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      |..+...|+++...         ..|++.+......+.......+..|...+.+  +. .++.+. ++.+.++++..+..
T Consensus       469 f~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~-~vvva~-g~~l~~fel~~~~L  544 (1158)
T 3ei3_A          469 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SS-QVVVAV-GRALYYLQIHPQEL  544 (1158)
T ss_dssp             CCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SS-EEEEEE-TTEEEEEEEETTEE
T ss_pred             ccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CC-EEEEEE-CCEEEEEEeeCCce
Confidence            34455566665432         2356666555555656654444445444444  33 455544 67888888765432


Q ss_pred             eeEEeccCCCCeEEEEEcCC------CCEEEEEeC-CCeEEEEeCCCCceeeEeeC--CCCeEEEEEec--CCCEEEEEE
Q 006743           73 KVSWLKQHSAPTAGISFSSD------DKIIASVGL-DKKLYTYDPGSRRPSSCITY--EAPFSSLAFID--DDWILTAGT  141 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSPd------g~~LaSgS~-DGtVrIWDlrtgk~v~~i~h--~~~ItsLafSP--dG~~LatGs  141 (633)
                      ....-..-...|.|+++.+.      .+++++|.. |++|+|+++.+.+.+.....  .....++++..  ...+|.+|-
T Consensus       545 ~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl  624 (1158)
T 3ei3_A          545 RQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCAL  624 (1158)
T ss_dssp             EEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred             eeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEe
Confidence            21122234568999999862      478999997 99999999987666654433  33555555543  345788999


Q ss_pred             cCCeEEEEECC
Q 006743          142 SNGRVVFYDIR  152 (633)
Q Consensus       142 ~DGsV~IWDlr  152 (633)
                      .||.+.-+.+.
T Consensus       625 ~dG~l~~~~~d  635 (1158)
T 3ei3_A          625 GDGALFYFGLN  635 (1158)
T ss_dssp             TTSEEEEEEEC
T ss_pred             CCCeEEEEEEc
Confidence            99997666554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.84  E-value=0.71  Score=48.10  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=61.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEe------CCCCCcEEEEEEccC---CCeEEEEEeC-------CCeEEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK------DPNEQVLRVLDYSRN---SRHLLVTAGD-------DGTLHL   64 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~------~~~~~~VssLafSpd---g~~lLaSGs~-------DGtI~I   64 (633)
                      +|.|+|++|+++...|.|++++. +++....+.      .........|+|+|+   +..++++-..       ...|..
T Consensus        24 ~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r  102 (353)
T 2g8s_A           24 AFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGY  102 (353)
T ss_dssp             EECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEE
T ss_pred             EEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEE
Confidence            47899984555667899999985 443221111      111234577999996   4434444332       235777


Q ss_pred             EECCCCCce---eE-Eecc------CCCCeEEEEEcCCCCEEEEEeCC-------------CeEEEEeCCC
Q 006743           65 WDTTGRSPK---VS-WLKQ------HSAPTAGISFSSDDKIIASVGLD-------------KKLYTYDPGS  112 (633)
Q Consensus        65 WDl~t~~~~---v~-~l~~------H~~~VtsLafSPdg~~LaSgS~D-------------GtVrIWDlrt  112 (633)
                      |+.......   .. .+..      .......|+|.|||.++++.+..             +.|.-+|...
T Consensus       103 ~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A          103 GRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             EEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             EEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence            776543110   11 1111      11224679999999766665432             4677777653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.76  E-value=1.4  Score=44.24  Aligned_cols=143  Identities=13%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             CCCCEEEEEEC----C-------CcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCC--------CeEE
Q 006743            4 CKDEHLASISL----S-------GDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDD--------GTLH   63 (633)
Q Consensus         4 pdG~~LaSgs~----D-------G~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~D--------GtI~   63 (633)
                      .+++.++.|+.    +       ..+.+||..+++-.. +.. .....-.+++.. ++ .+++.|+.+        ..+.
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEE
Confidence            35677777773    1       127788987765322 111 011000111222 33 477777743        4589


Q ss_pred             EEECCCCCceeEEeccC--CCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEeCCCCceeeEee--CC-CCeEEEEEec
Q 006743           64 LWDTTGRSPKVSWLKQH--SAPTAGISFSSDDKIIASVGL-D-----KKLYTYDPGSRRPSSCIT--YE-APFSSLAFID  132 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H--~~~VtsLafSPdg~~LaSgS~-D-----GtVrIWDlrtgk~v~~i~--h~-~~ItsLafSP  132 (633)
                      +||..+.+.  ..+...  ...-.+++. -++++++.|+. +     ..+.+||+.+.+-...-.  .. ....++.+  
T Consensus       121 ~~d~~~~~W--~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  195 (315)
T 4asc_A          121 CYDRLSFKW--GESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--  195 (315)
T ss_dssp             EEETTTTEE--EECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred             EECCCCCcE--eECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--
Confidence            999987652  112111  111112222 25677777776 2     369999998765433221  11 11222222  


Q ss_pred             CCCEEEEEEcCC-----eEEEEECCCC
Q 006743          133 DDWILTAGTSNG-----RVVFYDIRGK  154 (633)
Q Consensus       133 dG~~LatGs~DG-----sV~IWDlrs~  154 (633)
                      ++++++.|+.++     .+.+||+.+.
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCC
Confidence            677788887654     5889999875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.73  E-value=1.6  Score=49.91  Aligned_cols=148  Identities=10%  Similarity=0.141  Sum_probs=83.6

Q ss_pred             CCCEEEEEECC----CcEEEEECCCCceeEEE-e-----CCCCCcEEEEEEcc-CCCeEEEEEeCCC------eEEEEEC
Q 006743            5 KDEHLASISLS----GDLILHNLASGAKAAEL-K-----DPNEQVLRVLDYSR-NSRHLLVTAGDDG------TLHLWDT   67 (633)
Q Consensus         5 dG~~LaSgs~D----G~I~IWDl~tgk~v~~~-~-----~~~~~~VssLafSp-dg~~lLaSGs~DG------tI~IWDl   67 (633)
                      ++..++.||.+    ..+.+||..+++....- .     ......-.+++... ++. +++.|+.++      .+.+||.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEEeC
Confidence            45666677643    46889998877644322 1     11111112233333 454 777777543      5889998


Q ss_pred             CCCCceeEEecc--CCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeeEee------CCCCeEEEEEecC-CCE
Q 006743           68 TGRSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGLDK--KLYTYDPGSRRPSSCIT------YEAPFSSLAFIDD-DWI  136 (633)
Q Consensus        68 ~t~~~~v~~l~~--H~~~VtsLafSPdg~~LaSgS~DG--tVrIWDlrtgk~v~~i~------h~~~ItsLafSPd-G~~  136 (633)
                      .+....  .+..  ....-.+++...++++++.|+.++  .+.+||+.+..-.....      ......++.+..+ +++
T Consensus       476 ~t~~W~--~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWS--MIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEE--ECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEE--ECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            875521  1111  111112333323788888888765  69999998865433221      1222334555655 667


Q ss_pred             EEEEEc--C-----CeEEEEECCCCC
Q 006743          137 LTAGTS--N-----GRVVFYDIRGKP  155 (633)
Q Consensus       137 LatGs~--D-----GsV~IWDlrs~~  155 (633)
                      ++.|+.  +     ..|.+||+.+..
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCc
Confidence            777776  2     458999998764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.45  E-value=1.6  Score=45.88  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=58.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE--EEe---CCCCCcEEEEEEccC---CCeEEEEE--eCCCeEEEEECCCC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAA--ELK---DPNEQVLRVLDYSRN---SRHLLVTA--GDDGTLHLWDTTGR   70 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~--~~~---~~~~~~VssLafSpd---g~~lLaSG--s~DGtI~IWDl~t~   70 (633)
                      +|.|||+++++--..|.|++++..+++...  .+.   .........|+++|+   +..++++-  ..++.|.-|.....
T Consensus        38 a~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~  117 (347)
T 3das_A           38 APLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEK  117 (347)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTT
T ss_pred             EEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCC
Confidence            478999877665448999999876555322  121   112345678999985   33233332  24566777776541


Q ss_pred             C----------ceeEEec-cCCCCeEEEEEcCCCCEEEEEe
Q 006743           71 S----------PKVSWLK-QHSAPTAGISFSSDDKIIASVG  100 (633)
Q Consensus        71 ~----------~~v~~l~-~H~~~VtsLafSPdg~~LaSgS  100 (633)
                      .          .++..+. ........|+|.|||.++++.+
T Consensus       118 ~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          118 KPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            1          1111121 1122356799999998877765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.39  E-value=3.7  Score=40.69  Aligned_cols=141  Identities=11%  Similarity=0.027  Sum_probs=74.8

Q ss_pred             EEEEEEC--CCcEEEEECCCCceeEE--EeCCCCCcEEEEEEccCCCeEEEEEeCC----CeEEEEECCCCCceeEEecc
Q 006743            8 HLASISL--SGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDD----GTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         8 ~LaSgs~--DG~I~IWDl~tgk~v~~--~~~~~~~~VssLafSpdg~~lLaSGs~D----GtI~IWDl~t~~~~v~~l~~   79 (633)
                      .++.|+.  ...+.+||..+++-...  +... .....++.  -++ .+++.|+.+    ..+.+||..+.......-..
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~--~~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK-RRDAACVF--WDN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCC-CBSCEEEE--ETT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcc-cceeEEEE--ECC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            4555654  35799999887653321  1111 11112222  244 377777765    67899999876532111111


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEc---------
Q 006743           80 HSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTS---------  142 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~D------GtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~---------  142 (633)
                      ....-.+++.. ++++++.|+.+      ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+.         
T Consensus        90 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           90 TPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             SCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred             ccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence            11111122222 57777888765      468999998876443321  1111112222 25666677664         


Q ss_pred             CCeEEEEECCCC
Q 006743          143 NGRVVFYDIRGK  154 (633)
Q Consensus       143 DGsV~IWDlrs~  154 (633)
                      -..+.+||+.+.
T Consensus       168 ~~~~~~yd~~~~  179 (306)
T 3ii7_A          168 LNSCEVYDPATE  179 (306)
T ss_dssp             CCCEEEEETTTT
T ss_pred             cceEEEeCCCCC
Confidence            345889999876

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.37  E-value=1.2  Score=44.58  Aligned_cols=140  Identities=12%  Similarity=0.084  Sum_probs=74.4

Q ss_pred             CCCEEEEEEC----C-----CcEEEEECCCCceeEE--EeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECC
Q 006743            5 KDEHLASISL----S-----GDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTT   68 (633)
Q Consensus         5 dG~~LaSgs~----D-----G~I~IWDl~tgk~v~~--~~~~~~~~VssLafSpdg~~lLaSGs~D-----GtI~IWDl~   68 (633)
                      +++.++.|+.    +     ..+.+||+.+.+-...  +... .....++.+  ++. +++.|+.+     ..+.+||..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP-RNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC-CBTCEEEEE--TTE-EEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC-ccccEEEEE--CCE-EEEEcCCCCCcccccEEEECCC
Confidence            3455555654    2     4688899877643221  1111 111122222  444 67776643     368899987


Q ss_pred             CCCceeEEeccC---CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeEee--CC-CCeEEEEEecCCCEE
Q 006743           69 GRSPKVSWLKQH---SAPTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YE-APFSSLAFIDDDWIL  137 (633)
Q Consensus        69 t~~~~v~~l~~H---~~~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrtgk~v~~i~--h~-~~ItsLafSPdG~~L  137 (633)
                      +...  ..+...   ...-.++.+  ++++++.|+.+     ..+.+||+.+.+-...-.  .. ....++.+  +++++
T Consensus       146 ~~~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy  219 (308)
T 1zgk_A          146 RDEW--HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIY  219 (308)
T ss_dssp             TTEE--EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred             CCeE--eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEE
Confidence            7652  111111   111122222  57777777765     468999998765433221  11 11222222  67777


Q ss_pred             EEEEcC-----CeEEEEECCCC
Q 006743          138 TAGTSN-----GRVVFYDIRGK  154 (633)
Q Consensus       138 atGs~D-----GsV~IWDlrs~  154 (633)
                      +.|+.+     ..|.+||+.+.
T Consensus       220 v~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          220 AAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EECCBCSSSBCCCEEEEETTTT
T ss_pred             EEeCCCCCCccceEEEEeCCCC
Confidence            777765     45999999875

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.22  E-value=13  Score=42.04  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=91.7

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-----cCCC
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-----QHSA   82 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-----~H~~   82 (633)
                      .|..|+.+| +..||..+.+... ........|.++.. .++  .|..+..+ -|..||..+..  ...+.     ....
T Consensus        75 ~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~~~  146 (758)
T 3ott_A           75 YLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD--TLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLPNN  146 (758)
T ss_dssp             EEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT--EEEEEETT-EEEEEETTTCC--EEEECHHHHCCSCS
T ss_pred             cEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC--cEEEEcCC-cceeEeCCCCe--EEEeccCCCCcCCC
Confidence            455666554 7888877653322 11111234666543 344  36666665 68889987655  22221     1235


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-e-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-T-----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~-----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      .|.++....++.+.+ ++.+ -|..||..+++..... .     ....|.++....++..|.+|+. +-|..||..+.. 
T Consensus       147 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~-  222 (758)
T 3ott_A          147 TIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ-  222 (758)
T ss_dssp             CEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE-
T ss_pred             eEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe-
Confidence            688888887777655 4544 4888898776543221 1     1234888888887776666664 458889987642 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeE
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVF  182 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~L  182 (633)
                       +..+... ....|.++..+.+|.+.
T Consensus       223 -~~~~~~l-~~~~i~~i~~d~~g~lW  246 (758)
T 3ott_A          223 -IKQTEAF-HNNSIKSLALDGNGDLL  246 (758)
T ss_dssp             -EEEEEEE-EEEEEEEEEECTTCCEE
T ss_pred             -EEeccCC-CCCeEEEEEEcCCCCEE
Confidence             1112111 12346667666544433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.91  E-value=2.9  Score=41.88  Aligned_cols=143  Identities=13%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             CCCCEEEEEEC----CC-------cEEEEECCCCceeEE--EeCCCCCcEEEEEEccCCCeEEEEEeCC-------CeEE
Q 006743            4 CKDEHLASISL----SG-------DLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDD-------GTLH   63 (633)
Q Consensus         4 pdG~~LaSgs~----DG-------~I~IWDl~tgk~v~~--~~~~~~~~VssLafSpdg~~lLaSGs~D-------GtI~   63 (633)
                      .+++.++.|+.    ++       .+.+||..+.+-...  +... .....++.+  ++ .+++.|+.+       ..+.
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-RCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-BCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEE
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-ccccceEEE--CC-EEEEEcCccCCCCcccceEE
Confidence            35666777763    12       177888876553221  1111 111111222  34 477777754       3588


Q ss_pred             EEECCCCCceeEEeccCCCCe--EEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeeEee--CCCCeEEEEEecC
Q 006743           64 LWDTTGRSPKVSWLKQHSAPT--AGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDD  133 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~V--tsLafSPdg~~LaSgS~D------GtVrIWDlrtgk~v~~i~--h~~~ItsLafSPd  133 (633)
                      +||..+.+..  .+.....+.  .+++. .++++++.|+.+      ..+.+||+.+.+-...-.  ......+++. -+
T Consensus       131 ~yd~~~~~W~--~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~  206 (318)
T 2woz_A          131 CYDPVAAKWS--EVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HK  206 (318)
T ss_dssp             EEETTTTEEE--EECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred             EEeCCCCCEe--ECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-EC
Confidence            8998776532  221111111  11222 356777777642      359999998875443321  1111112222 25


Q ss_pred             CCEEEEEEcC-----CeEEEEECCCC
Q 006743          134 DWILTAGTSN-----GRVVFYDIRGK  154 (633)
Q Consensus       134 G~~LatGs~D-----GsV~IWDlrs~  154 (633)
                      +++++.|+.+     ..|.+||+.+.
T Consensus       207 ~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          207 GKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CEEEEEcCcCCCCccceEEEEECCCC
Confidence            6777777654     35788998875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.90  E-value=4.4  Score=40.49  Aligned_cols=139  Identities=13%  Similarity=0.113  Sum_probs=72.5

Q ss_pred             EEEEEECCCcEEEEECCCCceeE-EEeCCCCCcEEEEEEccCCCeEEEEEeC-----C------CeEEEEECCCCCceeE
Q 006743            8 HLASISLSGDLILHNLASGAKAA-ELKDPNEQVLRVLDYSRNSRHLLVTAGD-----D------GTLHLWDTTGRSPKVS   75 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~-~~~~~~~~~VssLafSpdg~~lLaSGs~-----D------GtI~IWDl~t~~~~v~   75 (633)
                      .++.|+  ..+.+||..+++-.. .+.......-.++ ...++. +++.|+.     .      ..+.+||..+.+.  .
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~-~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~   80 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSL-VTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--L   80 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEE-ECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--E
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEE-EEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeE--E
Confidence            344454  579999998877433 2211112222222 233555 7777773     1      1278888877652  2


Q ss_pred             EeccCCCCe--EEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEc-
Q 006743           76 WLKQHSAPT--AGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTS-  142 (633)
Q Consensus        76 ~l~~H~~~V--tsLafSPdg~~LaSgS~D--------GtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~-  142 (633)
                      .+.....+-  .+++.. ++++++.|+.+        ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+. 
T Consensus        81 ~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  158 (315)
T 4asc_A           81 GMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKG  158 (315)
T ss_dssp             ECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred             ECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence            221111111  112222 56677777742        368999998865433221  1111112222 35667777776 


Q ss_pred             C-----CeEEEEECCCC
Q 006743          143 N-----GRVVFYDIRGK  154 (633)
Q Consensus       143 D-----GsV~IWDlrs~  154 (633)
                      +     ..+.+||+.+.
T Consensus       159 ~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          159 SDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTSCBCCCEEEEETTTT
T ss_pred             CCCcccceEEEEeCCCC
Confidence            2     45899998875

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.83  E-value=1.5  Score=43.70  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=78.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAK------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-   73 (633)
                      +|+|+|.+.++  .+|.++-.+..+...      ...+-..--....++.|.+++. +.++  .||.|+-++-.+.... 
T Consensus        47 af~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~  121 (236)
T 1tl2_A           47 FLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDN  121 (236)
T ss_dssp             EECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCC
T ss_pred             EECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCc
Confidence            58998986666  778777777644221      1222111111246788999997 3443  5699988876332211 


Q ss_pred             ----eEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eeEee--CCCCeEEEEEecCCCEEEEE
Q 006743           74 ----VSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP------SSCIT--YEAPFSSLAFIDDDWILTAG  140 (633)
Q Consensus        74 ----v~~l-~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~------v~~i~--h~~~ItsLafSPdG~~LatG  140 (633)
                          ...+ ...=..+..|.+.|+|.+.++.  |+.++-+..-+...      ...+.  .-....-+.|.+++.+.++.
T Consensus       122 Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          122 WIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             HHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             eeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence                0111 1111467999999999887777  77765444332221      11222  12234456788888777666


Q ss_pred             EcCCeEE
Q 006743          141 TSNGRVV  147 (633)
Q Consensus       141 s~DGsV~  147 (633)
                        +|.++
T Consensus       200 --~g~~Y  204 (236)
T 1tl2_A          200 --GGKFY  204 (236)
T ss_dssp             --TTEEE
T ss_pred             --CCeEE
Confidence              77444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.12  E-value=16  Score=41.36  Aligned_cols=166  Identities=13%  Similarity=0.114  Sum_probs=94.7

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEe----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc----
Q 006743            8 HLASISLSGDLILHNLASGAKAAELK----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ----   79 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~----~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~----   79 (633)
                      .|..++.+ -|..||..+++.. .+.    ......|.++....++.  |..|..+| |..||..+..........    
T Consensus       114 ~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~  188 (758)
T 3ott_A          114 TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQ  188 (758)
T ss_dssp             EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCC--EEEEETTE-EEEEETTTTEEEEECCCCCTTC
T ss_pred             cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCC--EEEEeCCC-HhhCccCCCceEEecCCCcccc
Confidence            44455555 5778887665433 231    11234577777776776  45556544 778887665421111111    


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ....|.++....++..|..|+. +-|..+|..+++...... ....|.++....+|.+. +|+.+ -|.+||..+..  +
T Consensus       189 ~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~--~  263 (758)
T 3ott_A          189 SNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTP--L  263 (758)
T ss_dssp             SSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSC--C
T ss_pred             ccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCc--E
Confidence            1234888888777776666664 458889988765433221 23458888887777654 45554 48888876642  2


Q ss_pred             EEEeec------CCCCCeeEEEEccCCCeEE
Q 006743          159 TVLRAC------SSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       159 ~~l~~~------~H~~~VtsLafsPdg~~La  183 (633)
                      ..+...      -....|.++..+.+|...+
T Consensus       264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  294 (758)
T 3ott_A          264 QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL  294 (758)
T ss_dssp             EEECCCTTCTTSCSCSCEEEEEECTTCCEEE
T ss_pred             EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE
Confidence            222210      0124578887777665443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.09  E-value=1.3  Score=44.40  Aligned_cols=143  Identities=13%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCce
Q 006743            5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSPK   73 (633)
Q Consensus         5 dG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~D-----GtI~IWDl~t~~~~   73 (633)
                      +++.++.|+.+     ..+.+||+.+.+-...-.... .....++.+  ++ .+++.|+.+     ..+.+||..+... 
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W-  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEW-  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEE-
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeE-
Confidence            45555665533     368889987664322111111 111122222  34 477777764     4589999877652 


Q ss_pred             eEEeccC--CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcC-
Q 006743           74 VSWLKQH--SAPTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSN-  143 (633)
Q Consensus        74 v~~l~~H--~~~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~D-  143 (633)
                       ..+...  ...-.+++.. ++++++.|+.+     ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+.+ 
T Consensus       197 -~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~  273 (308)
T 1zgk_A          197 -RMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDG  273 (308)
T ss_dssp             -EECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCS
T ss_pred             -eeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCC
Confidence             112111  1111122222 57777777765     469999998865443321  1111112222 256777777754 


Q ss_pred             ----CeEEEEECCCC
Q 006743          144 ----GRVVFYDIRGK  154 (633)
Q Consensus       144 ----GsV~IWDlrs~  154 (633)
                          ..|.+||+.+.
T Consensus       274 ~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          274 HTFLDSVECYDPDTD  288 (308)
T ss_dssp             SCBCCEEEEEETTTT
T ss_pred             CcccceEEEEcCCCC
Confidence                35788888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.01  E-value=1.6  Score=43.87  Aligned_cols=146  Identities=11%  Similarity=0.068  Sum_probs=73.6

Q ss_pred             CCCEEEEEECC-------CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCC
Q 006743            5 KDEHLASISLS-------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD------DGTLHLWDTTGRS   71 (633)
Q Consensus         5 dG~~LaSgs~D-------G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~------DGtI~IWDl~t~~   71 (633)
                      +++.++.|+.+       ..+.+||..+.+-...-.......-.+++. .++. +++.|+.      -..+.+||..+..
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTE-EEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCCCE
Confidence            45566667654       358888987765332211111100111222 3444 6677664      2358999998765


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcC-
Q 006743           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSN-  143 (633)
Q Consensus        72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~D-  143 (633)
                      .....-......-.+++.. ++++++.|+.+     ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+.+ 
T Consensus       187 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~  264 (318)
T 2woz_A          187 WKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAM  264 (318)
T ss_dssp             EEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCC
T ss_pred             EEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeec
Confidence            3211101111111122222 56777777654     357899998765443321  1111112222 256777777654 


Q ss_pred             -------------CeEEEEECCCC
Q 006743          144 -------------GRVVFYDIRGK  154 (633)
Q Consensus       144 -------------GsV~IWDlrs~  154 (633)
                                   ..|.+||+.+.
T Consensus       265 ~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          265 IQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             BC----CCBCCBCCCEEEEETTTT
T ss_pred             cCCCCceeccceeeeEEEEeCCCC
Confidence                         34778888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.54  E-value=6  Score=40.11  Aligned_cols=94  Identities=13%  Similarity=0.017  Sum_probs=44.9

Q ss_pred             CeEEEEECCCCCceeEEeccCCCCe-EEEEEcCCCCEEEEEeC------CCeEEEEeC--CCCceeeEee--CC-CCeEE
Q 006743           60 GTLHLWDTTGRSPKVSWLKQHSAPT-AGISFSSDDKIIASVGL------DKKLYTYDP--GSRRPSSCIT--YE-APFSS  127 (633)
Q Consensus        60 GtI~IWDl~t~~~~v~~l~~H~~~V-tsLafSPdg~~LaSgS~------DGtVrIWDl--rtgk~v~~i~--h~-~~Its  127 (633)
                      ..+.+||..+.......-......- .+++.. ++++++.|+.      ...+.+||+  .+.+-.....  .. ....+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            5799999987663221111111111 233332 5666677664      235778887  4443322211  11 11111


Q ss_pred             EEEecCCCEEEEEEcC----------------------CeEEEEECCCC
Q 006743          128 LAFIDDDWILTAGTSN----------------------GRVVFYDIRGK  154 (633)
Q Consensus       128 LafSPdG~~LatGs~D----------------------GsV~IWDlrs~  154 (633)
                      .+...++++++.|+.+                      ..+.+||+.+.
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~  295 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG  295 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC--
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC
Confidence            1222356777777642                      25788998865

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.32  E-value=0.38  Score=50.64  Aligned_cols=144  Identities=11%  Similarity=0.113  Sum_probs=85.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEEeCCC-CCcEEEEEEc--cCCCeEEEEE-eCCCeEEEEECCCCCceeEEec---
Q 006743            6 DEHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYS--RNSRHLLVTA-GDDGTLHLWDTTGRSPKVSWLK---   78 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~-~~~VssLafS--pdg~~lLaSG-s~DGtI~IWDl~t~~~~v~~l~---   78 (633)
                      +..+++++.||.|+-+|.++|+..-.++... ...+. ..-.  +.+...++.. ..||.|+.++..++......-.   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            3478889999999999999999998887531 12222 1100  1122233333 5899999999876642211100   


Q ss_pred             cCCCCeEE---EEE-c----CCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC--------eEEEEEe-----cCCCEE
Q 006743           79 QHSAPTAG---ISF-S----SDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--------FSSLAFI-----DDDWIL  137 (633)
Q Consensus        79 ~H~~~Vts---Laf-S----Pdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~--------ItsLafS-----PdG~~L  137 (633)
                      ....++..   ..+ .    -.+..+++|+.++.+...|+++|+.+..+....+        ..|....     ..+..|
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence            01122221   000 0    0456789999999999999999999988754321        1122211     124678


Q ss_pred             EEEEcCCeEEEEE
Q 006743          138 TAGTSNGRVVFYD  150 (633)
Q Consensus       138 atGs~DGsV~IWD  150 (633)
                      +.|..+..|.+.+
T Consensus       169 ~ig~~~y~v~~~~  181 (339)
T 2be1_A          169 VIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEEEEECEECC
T ss_pred             EEecceEEEEEEC
Confidence            8888888777777

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.03  E-value=16  Score=41.03  Aligned_cols=191  Identities=9%  Similarity=0.048  Sum_probs=111.1

Q ss_pred             CCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCCCCcEEEEEEc--cCCCeEEEEEeC-------CCeE---------EE
Q 006743            4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYS--RNSRHLLVTAGD-------DGTL---------HL   64 (633)
Q Consensus         4 pdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~~~~VssLafS--pdg~~lLaSGs~-------DGtI---------~I   64 (633)
                      .||++|..-.+ +..|...++...++-+.+..+....+..++|-  |+-. +++++++       ||..         .+
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~-yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTK-YVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCC-EEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCcc-EEEecceeeccCCCCCcccccCChhhceE
Confidence            36788887764 56799999998888777777778888888886  5555 6666553       2221         11


Q ss_pred             E---ECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------
Q 006743           65 W---DTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--------------------------------------  103 (633)
Q Consensus        65 W---Dl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG--------------------------------------  103 (633)
                      |   |..+.+..-+.+.  .+..-.+...+++++.++.+.+.                                      
T Consensus       219 f~~iD~~tm~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~  296 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG  296 (638)
T ss_dssp             EEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             EEEEcCCccEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence            1   1122221111111  12223344566777777765431                                      


Q ss_pred             --eEEEEeCCC----C-ceeeEeeCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCC--------ce-EEEeecCC
Q 006743          104 --KLYTYDPGS----R-RPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQ--------PL-TVLRACSS  166 (633)
Q Consensus       104 --tVrIWDlrt----g-k~v~~i~h~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~k--------~v-~~l~~~~H  166 (633)
                        .|.+.|.+.    + .....+........+..+|||+++++++. +.+|.++|.+....        +. .+.....-
T Consensus       297 g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~  376 (638)
T 3sbq_A          297 DSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL  376 (638)
T ss_dssp             TCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC
T ss_pred             CCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC
Confidence              244444443    1 22333344455567889999999987765 78899999984210        00 01111123


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       167 ~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      .-.....+|+++|            ..+.+.-.|..|..|++.
T Consensus       377 GlGPlHt~Fd~~G------------~aYTtlfidSqvvkWni~  407 (638)
T 3sbq_A          377 GLGPLHTTFDGRG------------NAYTTLFIDSQVVKWNME  407 (638)
T ss_dssp             CSCEEEEEECSSS------------EEEEEETTTTEEEEEEHH
T ss_pred             CCcccEEEECCCC------------ceEeeeeecceEEEEecc
Confidence            4456677887754            344444568888888774

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.60  E-value=21  Score=38.44  Aligned_cols=101  Identities=15%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             cEEEEEEccCCCeEEEEEeCC-CeEEEEECCCCCce-eEEecc------CCCCeEEEEEcCC---CCEEEEEeC------
Q 006743           39 VLRVLDYSRNSRHLLVTAGDD-GTLHLWDTTGRSPK-VSWLKQ------HSAPTAGISFSSD---DKIIASVGL------  101 (633)
Q Consensus        39 ~VssLafSpdg~~lLaSGs~D-GtI~IWDl~t~~~~-v~~l~~------H~~~VtsLafSPd---g~~LaSgS~------  101 (633)
                      ....|+|.|+|+ ++++ ... +.|++++..++... +..+..      .......|+|+|+   +.+|+.+..      
T Consensus        28 ~P~~~a~~pdG~-l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           28 KPHALLWGPDNQ-IWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SEEEEEECTTSC-EEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CceEEEEcCCCc-EEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345799999998 5554 555 47888876544321 222211      2456779999995   555554432      


Q ss_pred             -------CCeEEEEeCCCC--ce---eeE---ee--CCCCeEEEEEecCCCEEEEEE
Q 006743          102 -------DKKLYTYDPGSR--RP---SSC---IT--YEAPFSSLAFIDDDWILTAGT  141 (633)
Q Consensus       102 -------DGtVrIWDlrtg--k~---v~~---i~--h~~~ItsLafSPdG~~LatGs  141 (633)
                             ...|..|++..+  +.   ..+   +.  .......|+|.|||++.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   235666665322  11   111   21  234578999999998776644

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.48  E-value=4.3  Score=42.10  Aligned_cols=142  Identities=9%  Similarity=0.099  Sum_probs=78.1

Q ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeE----EeccCCCCeEEEEEcCC---CCEEEEEe-C-------CC
Q 006743           40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVS----WLKQHSAPTAGISFSSD---DKIIASVG-L-------DK  103 (633)
Q Consensus        40 VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-~v~----~l~~H~~~VtsLafSPd---g~~LaSgS-~-------DG  103 (633)
                      ...|+|.|+++. |+.+...|.|++++..+... .+.    ...........|+|+|+   +..|+.+. .       ..
T Consensus        20 P~~i~~~pdG~~-l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           20 PWALAFLPDNHG-MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             EEEEEECSTTCC-EEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             cEEEEEcCCCCE-EEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            456999999973 55566789999998543211 011    11122346789999995   45554443 2       23


Q ss_pred             eEEEEeCCCC--c---eeeEe---e----CCCCeEEEEEecCCCEEEEEEc-------------CCeEEEEECCCCC---
Q 006743          104 KLYTYDPGSR--R---PSSCI---T----YEAPFSSLAFIDDDWILTAGTS-------------NGRVVFYDIRGKP---  155 (633)
Q Consensus       104 tVrIWDlrtg--k---~v~~i---~----h~~~ItsLafSPdG~~LatGs~-------------DGsV~IWDlrs~~---  155 (633)
                      .|..|++...  +   ....+   .    .......|+|.|||.+.++.+.             .|.|.-+|.....   
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~  178 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD  178 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence            5666766532  1   11111   1    1122467999999955554433             2567777776430   


Q ss_pred             C--------ceEEEeecCCCCCeeEEEEcc-CCCeEEE
Q 006743          156 Q--------PLTVLRACSSSEAVSSLCWQR-AKPVFID  184 (633)
Q Consensus       156 k--------~v~~l~~~~H~~~VtsLafsP-dg~~Las  184 (633)
                      .        ...++. .+| .....++|+| ++...++
T Consensus       179 npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          179 NPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEE
Confidence            0        112222 233 3467899998 4544443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.72  E-value=1.6  Score=49.86  Aligned_cols=149  Identities=14%  Similarity=0.106  Sum_probs=79.7

Q ss_pred             CCCEEEEEECC------CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEE
Q 006743            5 KDEHLASISLS------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSW   76 (633)
Q Consensus         5 dG~~LaSgs~D------G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~   76 (633)
                      +++.++.||.+      +.+.+||..+.+-...-.......-.+++...++. +++.|+.++  .+.+||..+.......
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEcc
Confidence            56666777644      35788998775432211111111111223323555 777887655  6999999876532111


Q ss_pred             ----eccCCCCeEEEEEcCC-CCEEEEEeC--C-----CeEEEEeCCCCc------eeeEee--CCCC-eEEEEEecCCC
Q 006743           77 ----LKQHSAPTAGISFSSD-DKIIASVGL--D-----KKLYTYDPGSRR------PSSCIT--YEAP-FSSLAFIDDDW  135 (633)
Q Consensus        77 ----l~~H~~~VtsLafSPd-g~~LaSgS~--D-----GtVrIWDlrtgk------~v~~i~--h~~~-ItsLafSPdG~  135 (633)
                          +........++.+..+ +++++.|+.  +     ..+.+||+.+..      -.....  .... -.+++...+++
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence                1111112233555554 667777775  2     368999998876      222111  1111 11233333477


Q ss_pred             EEEEEEcC--------CeEEEEECCCC
Q 006743          136 ILTAGTSN--------GRVVFYDIRGK  154 (633)
Q Consensus       136 ~LatGs~D--------GsV~IWDlrs~  154 (633)
                      +++.|+.+        ..|.+||+.+.
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCC
Confidence            77777743        45899999875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.01  E-value=7.5  Score=40.76  Aligned_cols=77  Identities=16%  Similarity=0.165  Sum_probs=51.3

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE--e-----eCCCCeEEEEEecC---CCEEEEE---EcC
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--I-----TYEAPFSSLAFIDD---DWILTAG---TSN  143 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~--i-----~h~~~ItsLafSPd---G~~LatG---s~D  143 (633)
                      +-..-...+.|+|.|++.++++--..|.|++++..+++....  +     ........|+++|+   +.+|.+.   ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333445678999999999777665589999998766654222  1     23566899999996   4445443   234


Q ss_pred             CeEEEEECCC
Q 006743          144 GRVVFYDIRG  153 (633)
Q Consensus       144 GsV~IWDlrs  153 (633)
                      +.|.-|.+..
T Consensus       107 ~~v~R~~~~~  116 (347)
T 3das_A          107 NRIVRMLYDE  116 (347)
T ss_dssp             EEEEEEEBCT
T ss_pred             CEEEEEEeCC
Confidence            5666676654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=88.81  E-value=2  Score=43.71  Aligned_cols=135  Identities=10%  Similarity=-0.002  Sum_probs=63.5

Q ss_pred             CcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeC------CCeEEEEEC--CCCCceeEEeccC--C-C
Q 006743           16 GDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGD------DGTLHLWDT--TGRSPKVSWLKQH--S-A   82 (633)
Q Consensus        16 G~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~------DGtI~IWDl--~t~~~~v~~l~~H--~-~   82 (633)
                      ..+.+||..+.+-..  .+......... ++.. ++. +++.|+.      ...+.+||+  .+..  -..+...  . .
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~-~~~~-~~~-iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~~~~~~~~~~~  242 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAA-VVNK-GDK-TWLINGEAKPGLRTDAVFELDFTGNNLK--WNKLAPVSSPDG  242 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCE-EEEE-TTE-EEEECCEEETTEECCCEEEEECC---CE--EEECCCSSTTTC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCccccc-EEEE-CCE-EEEEeeecCCCcccCceEEEEecCCCCc--EEecCCCCCCcc
Confidence            578999987765332  22211111112 2222 333 6777664      345778887  3333  2222111  1 1


Q ss_pred             CeEEEEEcCCCCEEEEEeCC----------------------CeEEEEeCCCCceeeEeeCC-CCeEEEEEecCCCEEEE
Q 006743           83 PTAGISFSSDDKIIASVGLD----------------------KKLYTYDPGSRRPSSCITYE-APFSSLAFIDDDWILTA  139 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~D----------------------GtVrIWDlrtgk~v~~i~h~-~~ItsLafSPdG~~Lat  139 (633)
                      ...+.+...++++++.|+.+                      ..+.+||+.+.+-...-... ......+..-++++++.
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~  322 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLII  322 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEE
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEE
Confidence            11111122256777777632                      25789999876543332111 11111222346788888


Q ss_pred             EEcCC------eEEEEECCCCC
Q 006743          140 GTSNG------RVVFYDIRGKP  155 (633)
Q Consensus       140 Gs~DG------sV~IWDlrs~~  155 (633)
                      |+.++      .|.++++++++
T Consensus       323 GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          323 GGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             EEECGGGCEEEEEEEEEC-CCS
T ss_pred             eeeCCCCCEeeeEEEEEEcCcE
Confidence            88653      36677888764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.77  E-value=5.6  Score=44.71  Aligned_cols=113  Identities=11%  Similarity=0.022  Sum_probs=74.8

Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCC------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 006743           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY  108 (633)
Q Consensus        41 ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~------------~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIW  108 (633)
                      ..+..+|+|++++++|--+.+|.|+|++...            ..+.... -.-.....+|.++|+...+.--|..|..|
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEE
Confidence            3478899999877788889999999986311            1122222 33456788999999666667789999999


Q ss_pred             eCCCC----------ceeeEeeCCCCeEEEEE------ecCCCEEEEEEc---CCe----------EEEEECCCC
Q 006743          109 DPGSR----------RPSSCITYEAPFSSLAF------IDDDWILTAGTS---NGR----------VVFYDIRGK  154 (633)
Q Consensus       109 Dlrtg----------k~v~~i~h~~~ItsLaf------SPdG~~LatGs~---DGs----------V~IWDlrs~  154 (633)
                      ++...          ..+..+.....+-.+.-      .+||++|++.+.   |+.          -.++|+...
T Consensus       405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd  479 (638)
T 3sbq_A          405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD  479 (638)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred             eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence            98642          23333433333333433      568999999865   443          366777543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.44  E-value=12  Score=46.67  Aligned_cols=92  Identities=14%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H-   80 (633)
                      .||..+.||.-. ...+.|||+++...++.+.- ...+|. -+|-...  .|+..+ +..|+-|++.+...+++.+..| 
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~Vvf-WkWis~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTF-WKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceE-EEecCCC--eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            467777776654 67899999988887777664 334443 4676543  344443 4679999997654444444444 


Q ss_pred             ---CCCeEEEEEcCCCCEEEEE
Q 006743           81 ---SAPTAGISFSSDDKIIASV   99 (633)
Q Consensus        81 ---~~~VtsLafSPdg~~LaSg   99 (633)
                         ...|..-+.+++.++++..
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~  168 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLT  168 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEE
Confidence               3456566666666666543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=86.52  E-value=31  Score=35.24  Aligned_cols=199  Identities=11%  Similarity=0.028  Sum_probs=108.6

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---CCC--
Q 006743            4 CKDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---GRS--   71 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~---t~~--   71 (633)
                      ++..++++.+.+|.|+-..+..-+       -+..+.-...+.+..+......+ .++..+..|.++-....   ...  
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~-~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHD-YLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCC-EEEEEECCCeEEEEEHHHCCCCCcc
Confidence            466788999999999988764322       11112212334444444444444 57777888987776652   111  


Q ss_pred             ----ce--eEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCC-------CceeeEeeCCCCeEEEEEecCCC
Q 006743           72 ----PK--VSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGS-------RRPSSCITYEAPFSSLAFIDDDW  135 (633)
Q Consensus        72 ----~~--v~~l~~H~~~VtsLafSP---dg~~LaSgS~DGtVrIWDlrt-------gk~v~~i~h~~~ItsLafSPdG~  135 (633)
                          +.  ...+.. ...|.++...+   +..+|+.++.+|.++...+..       +.....+...+.+..+.....+.
T Consensus        85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence                00  001222 23455553332   467889999999999887742       22222223456677776666667


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       136 ~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      .|+..+.+|.+..+....-..    ..  .....|..+...++...+... ...++..++..+..|..+..++..+
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~----~g--R~~~Gv~~i~L~~~d~vv~~~-~v~~~~~l~~vt~~G~~kr~~~~e~  232 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRL----TN--RGTQGVCGMKLKEGDLFVKVL-SVKENPYLLIVSENGYGKRLNMSKI  232 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCB----CC--TTBCCEECCCCCTTCCEEEEE-ECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred             EEEEEeCCCcEEEEEHHHccc----cC--CCCCCeEeEEeCCCCEEEEEE-EECCCCeEEEEECCCceEEEEHHHh
Confidence            899999999999988764210    00  112334444444322222211 1122334555566777777766544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=85.84  E-value=14  Score=40.32  Aligned_cols=138  Identities=12%  Similarity=0.121  Sum_probs=92.4

Q ss_pred             CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEE
Q 006743           59 DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        59 DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~La  138 (633)
                      +..|.|-|+.......+.-..-    -+.-.+|..+.|+.-. ..++.|+|+++...+..+.....|.--.|-.+ +.|+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEE
T ss_pred             CCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEE
Confidence            3478888887766443322221    2344688778777766 67999999999998888877777877778754 4555


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCC--CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          139 AGTSNGRVVFYDIRGKPQPLTVLRACSS--SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H--~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ..+ +..|+-|++.....|.+++..+..  ...|..-..+++.++++..+-.....     ...|.+.+|-+
T Consensus       121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~-----~v~G~mQLYS~  186 (494)
T 1bpo_A          121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN-----RVVGAMQLYSV  186 (494)
T ss_dssp             EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT-----EEEEEEEEEES
T ss_pred             EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC-----cccceEEEeec
Confidence            554 467999999887788888875422  35577777788888876543221111     12466777755

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=85.84  E-value=34  Score=35.18  Aligned_cols=139  Identities=10%  Similarity=-0.048  Sum_probs=71.4

Q ss_pred             CEEEEEECCCcEEEEECCC-CceeEEE-eCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEEecc-
Q 006743            7 EHLASISLSGDLILHNLAS-GAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQ-   79 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~t-gk~v~~~-~~~~~~~VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~~~~v~~l~~-   79 (633)
                      ..|.+|...| +.+++... ++.-..+ .......|.+|++.|.....|.++...|    .|...+-.....  ..+.. 
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW--~~~~~~   99 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNW--TEATRP   99 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCC--EECSBC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCc--eECCcc
Confidence            3677788777 66665433 2222222 1123467899999983222355555555    444432222211  11110 


Q ss_pred             -------------CCCCeEEEEEcC-C-CCEEEEEeCCCeEEEEeCCCCceeeEee--------------------CCCC
Q 006743           80 -------------HSAPTAGISFSS-D-DKIIASVGLDKKLYTYDPGSRRPSSCIT--------------------YEAP  124 (633)
Q Consensus        80 -------------H~~~VtsLafSP-d-g~~LaSgS~DGtVrIWDlrtgk~v~~i~--------------------h~~~  124 (633)
                                   +...|.++++.| + ...|+.+...+.|...+-. ++.-..+.                    ....
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~  178 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK  178 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCc
Confidence                         112477899987 3 5667777666666655432 22111111                    1235


Q ss_pred             eEEEEEecC-CCEEEEEEcCCeEEEE
Q 006743          125 FSSLAFIDD-DWILTAGTSNGRVVFY  149 (633)
Q Consensus       125 ItsLafSPd-G~~LatGs~DGsV~IW  149 (633)
                      +.+|.++|. ...|+++..++.|+..
T Consensus       179 i~~i~~d~~~~~~l~vg~~~ggl~~s  204 (394)
T 3b7f_A          179 MHSILVDPRDPKHLYIGMSSGGVFES  204 (394)
T ss_dssp             EEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred             eeEEEECCCCCCEEEEEECCCCEEEE
Confidence            788999883 4555666555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	633
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 9e-10
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 20/169 (11%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV------------------ 42
             N     +AS S    + +  +A+    AEL++    V  +                  
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD 102
              S      L++   D T+ +WD +     +  L  H     G+ F S  K I S   D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGKFILSCADD 268

Query: 103 KKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
           K L  +D  ++R    +  +E   +SL F      +  G+ +  V  ++
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 4/152 (2%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
                     S +      L ++  G            +   + +  N      T  DD 
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI-NAICFFPNGNAF-ATGSDDA 248

Query: 61  TLHL-WDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T  L      +                +SFS   +++ +   D     +D      +  +
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 120 T-YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
             ++   S L   DD   +  G+ +  +  ++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 3e-09
 Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL 101
             ++++    +    ++  +H+++    +  +V  LK+H+    G+ ++ D   I + G 
Sbjct: 13  HAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 102 DKKLYTYDP 110
           D+  Y +  
Sbjct: 72  DRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 5/122 (4%)

Query: 45  YSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK 104
            +  +   LV AG D    L+     + K+S            S            LDKK
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLS-FGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 105 LYTYDPGSRRPSSCITYEAPFSSLAFIDDD----WILTAGTSNGRVVFYDIRGKPQPLTV 160
             +    +        ++   S ++ +               +G +  +D+R     L  
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 367

Query: 161 LR 162
           L+
Sbjct: 368 LK 369

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 6/71 (8%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 83  PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA---PFSSLAFIDDDWILTA 139
           P +  +++ D   IA    + +++ Y+    +       +      + + +  D   +  
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 140 GTSNGRVVFYD 150
             ++     + 
Sbjct: 69  CGTDRNAYVWT 79

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD 102
           L ++   +   V+ G D  L+ W T        +  + S+       S DDK I +   D
Sbjct: 271 LKFAYCGK-WFVSTGKDNLLNAWRT--PYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

Query: 103 KKLYTYD 109
           KK   Y+
Sbjct: 328 KKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 13/76 (17%), Positives = 24/76 (31%)

Query: 76  WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW 135
            L  H +    + F+   K   S G D  L  +              +   S     DD 
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319

Query: 136 ILTAGTSNGRVVFYDI 151
            +  G+ + +   Y++
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 45  YSRNSRHLLVTAGDDGTLHLWDTTGRSP------KVSWLKQHSAPTAGISFSSDDKIIAS 98
            S      +     D  + +WD+           +      H      + F+ D + + S
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 99  VGLDKKLYTYDPGSRRPSS-------------CITYEAPFSSLAFIDDDWILTAGTSNGR 145
             LD+ +  ++  +    S              I ++    S+A   +D  + +G+ +  
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187
           V+F+D +    PL +L+   +S  V S+       +  +   
Sbjct: 332 VLFWDKK-SGNPLLMLQGHRNS--VISVAVANGSSLGPEYNV 370

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 9e-06
 Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 19/125 (15%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN-----------EQVLRVLDYSRNSR 50
           +    + + S SL   + L NL +    ++ K PN           +  +  +  ++N  
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 321

Query: 51  HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS------APTAGISFSSDDKIIASVGLDKK 104
           ++ ++   D  +  WD    +P +  L+ H       A   G S   +  + A+   D K
Sbjct: 322 YI-LSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379

Query: 105 LYTYD 109
              + 
Sbjct: 380 ARIWK 384

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 6/60 (10%), Positives = 20/60 (33%)

Query: 51  HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP 110
             + +A  D T+ +W+      + +           +      + + S+  +  +   +P
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
            ++     +AS S    + + N+A+      +        + L     ++  LV+   +G
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-WTKQALVSISANG 303

Query: 61  TLHLWD 66
            ++  +
Sbjct: 304 FINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 3/86 (3%)

Query: 41  RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG 100
            VL  +     +    G   +++       +       +HS  T     S      AS  
Sbjct: 21  VVLGNTPAGDKIQYCNGT--SVYTVPVGSLTD-TEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 101 LDKKLYTYDPGSRRPSSCITYEAPFS 126
           +   +  +D          T      
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSG 103

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 32/311 (10%), Positives = 71/311 (22%), Gaps = 17/311 (5%)

Query: 50  RHLLVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYT 107
           R  ++       L + DT      KV  +            +   +   A+V   + L  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 108 YDPGSRRPSSCITYEAP------FSSLAFIDDDWILTAGTSNGRVVFYDIRGK------- 154
            D  +      I    P          A   D   L    S  R+       +       
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 155 -PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213
             + L+  +A  +   ++ L W R                   G + +   +        
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 214 TSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYN 273
                L+           + P   A                                  +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 274 FKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDG 333
                   +P         ++ + +D  + A    +P+     S+   +      +    
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTV-WLGGA 299

Query: 334 SNEHSVFDWKS 344
             + + +D ++
Sbjct: 300 LGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 17/171 (9%)

Query: 7   EHLASISLSGDLILHNLASGAKAAELKDPNE-QVLRVLDYSRNSRHLLVTAGDDGTLHLW 65
           +++ + +    L++ +    A    +   +      V   +   R    T     +L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 66  DTTG----RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL------------YTYD 109
           D           +S  ++      G + S D K +A      +L              YD
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 110 PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160
             +             + LA+  D   L     +  V+  +     +   +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 13/147 (8%), Positives = 41/147 (27%), Gaps = 6/147 (4%)

Query: 32  LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS 91
           L+     V+  L +  N    ++T  DD  + ++D+  +   +  L  H      + ++ 
Sbjct: 8   LRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKYAH 63

Query: 92  DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT--AGTSNGRVVFY 149
              +++                       + +    L  ++   I     G+ +  +  +
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 150 DIRGKPQPLTVLRACSSSEAVSSLCWQ 176
            +  +                 +    
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEEN 150

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 5/54 (9%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 53  LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLY 106
           ++ +G +   ++++        + + + +     ++F     ++A+V  D + +
Sbjct: 296 ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF-KGKTLVAAVEKDGQSF 348

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 54  VTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
            T   D  + ++        +  L  H      + + +   ++ S G D  +  ++
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 11/64 (17%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 3   NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62
             +++ +A+ SL  ++ ++++    K  +  + ++  +  L +   S   LV++G D  +
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGADACI 281

Query: 63  HLWD 66
             W+
Sbjct: 282 KRWN 285

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.3 bits (111), Expect = 4e-06
 Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 10/137 (7%)

Query: 22  NLASGAKAAELKDPNEQVLRVLDYSRNSRHLL-VTAGDDGTLHLWDTTGRSPKVSWLKQH 80
            +    ++ ++    E   +      +  +L  VT  D G + L D   +   V  +   
Sbjct: 3   GMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKI-VKVIDTG 61

Query: 81  SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFI-------DD 133
            A       S+  + +  +G D ++   D  ++ P+     +    + +         +D
Sbjct: 62  YAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED 120

Query: 134 DWILTAGTSNGRVVFYD 150
            + +       +    D
Sbjct: 121 RYTIAGAYWPPQFAIMD 137

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 54  VTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
            T   D ++ +W+        +     H+  +       ++  I S G D  +  ++
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF 89
          L  S + + L  +A  +G ++ WD +       +   H+    GI  
Sbjct: 18 LSSSADGKTL-FSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 3/102 (2%)

Query: 77  LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDD 134
              H+     +S S+D K + S   +  + ++D  +   +      +    + +      
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176
            + T    +  +      G     +   A   S     L   
Sbjct: 68  DLFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 51  HLLVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTY 108
               T G D T+ +WD  T +  +   L +       +    + +  I S+ LD  L  Y
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

Query: 109 D 109
           +
Sbjct: 324 E 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDT-TGRSPKVSWLKQH-SAPTAGISFS--SDDKIIAS 98
           L Y   +  +    G    +   D    + P V     H S+    + FS     + + S
Sbjct: 23  LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 82

Query: 99  VGLDKKLYTYDPGSRRPSSCI 119
                K+  +     + S+ +
Sbjct: 83  GDESGKVIVWGWTFDKESNSV 103

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 6/67 (8%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVL-RVLDYSRNSRHLLVTAGDD 59
           +     +  A++     + + ++ +     +     +Q+  + +         +++   D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 60  GTLHLWD 66
           GTL+ ++
Sbjct: 318 GTLNFYE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 29/318 (9%), Positives = 72/318 (22%), Gaps = 24/318 (7%)

Query: 49  SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYT 107
               ++       LH+ D    +   S +            + D++           +Y 
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 108 YDPGSRRPSSCITYEAPFSS-------LAF-IDDDWILTAGTSNGRVVFYDIRGKP---- 155
            D  + + +      +            A   D   +        R+  + +   P    
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 156 ------QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209
                      +R       V  +       +++          +  G    ++ + +  
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD-VKTGKYTVALPLRNWN 185

Query: 210 PSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPG-GPLARLHAP 268
               ++   L      S  +  S     A                          + H  
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245

Query: 269 RSSYNFKDDMEVFSPLVDVQPITPSLD--KLWDGHEGAKKDHLPIDKKPSSMLFPSSSRR 326
             +   +          D   I   L+    +D  +        +D     + F     +
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK 305

Query: 327 FPYAEDGSNEHSVFDWKS 344
             Y     N+ +VF+  +
Sbjct: 306 L-YLGGTFNDLAVFNPDT 322

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 4/113 (3%)

Query: 3   NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62
               +  A+  L    +  +L +G    +      +        R+ +      G    L
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE--LYFTGLRSPKDPNQIYGVLNRL 274

Query: 63  HLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115
             +D   +  K+            ++F      +   G    L  ++P +   
Sbjct: 275 AKYDL--KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 48  NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT 107
                   A + G L  +D   R      + +       +  S+D K +     D K+YT
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

Query: 108 YD 109
           + 
Sbjct: 341 FP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 9e-05
 Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 31  ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--QHSAPTAGIS 88
           +++   +  +  +    +   L +    DG+L ++    ++  V  L+  ++  P    +
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLL-LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 89  FSSDDKIIASVG 100
           F  +  +   VG
Sbjct: 64  FIDNTDLQIYVG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 51  HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK 103
             L TAG DG +  W+   R    ++ K +      +  +  D I+     D 
Sbjct: 264 KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIACSDNILCLATSDD 314

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 19/160 (11%), Positives = 48/160 (30%), Gaps = 14/160 (8%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
                  H+ S SL   + + ++ +G     L         +        ++LV+   D 
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM----ELKDNILVSGNADS 237

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           T+ +WD        +    +   +A      +   + +   D  +  +D  +      + 
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 121 ------YEAPFSSLAFIDDDWILTAGTSNG----RVVFYD 150
                        +   +   +   G+ NG    +++  D
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 22 NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81
                    LK  ++ V+  L +  N    +V+  DD TL +W         + L  H+
Sbjct: 2  RRGELKSPKVLKGHDDHVITCLQFCGN---RIVSGSDDNTLKVWSAVTGKCLRT-LVGHT 57

Query: 82 APTAGISFSSD 92
                    +
Sbjct: 58 GGVWSSQMRDN 68

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 10/124 (8%)

Query: 35  PNEQVLRVLDYSRNSRHLL-VTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93
             E          +  +L  VT  D G + L D +      + L    A       S+  
Sbjct: 16  APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEI-KTVLDTGYAV-HISRLSASG 73

Query: 94  KIIASVGLDKKLYTYD--PGSRRPSSCITYEAPFSSLAFI-----DDDWILTAGTSNGRV 146
           + +  +G D K+   D         + I   +   S+        +D + +       + 
Sbjct: 74  RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133

Query: 147 VFYD 150
           V  D
Sbjct: 134 VIMD 137

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 3/74 (4%)

Query: 49  SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYT 107
           S    +   +   + + D T      + +   S P  G   S D   +  +      +  
Sbjct: 1   STFAYIANSESDNISVIDVTSNKV-TATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSI 58

Query: 108 YDPGSRRPSSCITY 121
            D  +    + +  
Sbjct: 59  IDTATNNVIATVPA 72

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 12/86 (13%)

Query: 49  SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT------------AGISFSSDDKII 96
                V+   DG L +WD      +    K +S               A    + +  ++
Sbjct: 23  CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82

Query: 97  ASVGLDKKLYTYDPGSRRPSSCITYE 122
           A+      L  Y       +  + +E
Sbjct: 83  ATTSFSGDLLFYRITREDETKKVIFE 108

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 9e-04
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           + +  D+++ S S    + + N ++      L      +       +    L+V+   D 
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI----ACLQYRDRLVVSGSSDN 198

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD------PGSRR 114
           T+ LWD    +                    D+K I S   D K+  +D      P +  
Sbjct: 199 TIRLWDIECGACLRVLEGHEELV---RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 115 PSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
            + C+     +      L F D+  I+++   +  ++ +D
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQIVSSS-HDDTILIWD 293

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 16/155 (10%), Positives = 35/155 (22%), Gaps = 15/155 (9%)

Query: 8   HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY------SRNSRHLLVTAGDDGT 61
             A    +  + + +  +    A+++ P+     V           +S  LL        
Sbjct: 88  RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147

Query: 62  LHLWDTTGRSP------KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115
                  G S          +     A       S    + AS            G++  
Sbjct: 148 AAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207

Query: 116 SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
            +         +        ++ A  S+       
Sbjct: 208 GAQNCS---SQAAQANYPGMLVWAVASSILQGDIP 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	633
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.88
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.86
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.85
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.84
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.84
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.82
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.78
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.76
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.65
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.63
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.61
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.58
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.55
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.43
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.41
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.38
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.37
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.31
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.27
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.09
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.08
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.98
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.9
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.86
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.8
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.79
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.63
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.45
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.33
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.31
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.25
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.09
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.03
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.96
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.84
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.5
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.15
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.8
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.34
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.32
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.12
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.11
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.03
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.91
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.87
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.54
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.45
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.13
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.71
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.6
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.94
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.56
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.92
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.83
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.21
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.56
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.37
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	89.94
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.8
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	84.33
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.28
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.83
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.25

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.9e-26  Score=228.88  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=159.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC------------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT------------   68 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~------------   68 (633)
                      +|+|++++||+|+.||.|+|||+.+++.+..+.. |...|.+++|+|++. ++++|+.|+.+++|+..            
T Consensus        62 ~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~  139 (340)
T d1tbga_          62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSREL  139 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSS-EEEEEETTCCEEEEESSSSCSCCCEEEEE
T ss_pred             EECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccce-eeeeecccceeecccccccccccccceec
Confidence            5899999999999999999999999999998886 567788999999887 77777777777777642            


Q ss_pred             ---------------------------------------------------------------------------CCCce
Q 006743           69 ---------------------------------------------------------------------------GRSPK   73 (633)
Q Consensus        69 ---------------------------------------------------------------------------t~~~~   73 (633)
                                                                                                 +.+. 
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~-  218 (340)
T d1tbga_         140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-  218 (340)
T ss_dssp             CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcE-
Confidence                                                                                       2221 


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      +..+.+|...|++++|+|++++|++|+.|+.|++||++.......+   .+...|.+++|+|++++|++|+.||.|+|||
T Consensus       219 ~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd  298 (340)
T d1tbga_         219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEE
T ss_pred             EEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEE
Confidence            2345678999999999999999999999999999999998877665   3667799999999999999999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +.+. +++..+.  +|.++|++++|+|++++|            ++++.|+.|+|||
T Consensus       299 ~~~~-~~~~~~~--~H~~~V~~l~~s~d~~~l------------~s~s~Dg~v~iWd  340 (340)
T d1tbga_         299 ALKA-DRAGVLA--GHDNRVSCLGVTDDGMAV------------ATGSWDSFLKIWN  340 (340)
T ss_dssp             TTTC-CEEEEEC--CCSSCEEEEEECTTSSCE------------EEEETTSCEEEEC
T ss_pred             CCCC-cEEEEEc--CCCCCEEEEEEeCCCCEE------------EEEccCCEEEEeC
Confidence            9987 4455555  899999999999965554            5557799999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1.6e-25  Score=228.66  Aligned_cols=199  Identities=12%  Similarity=0.141  Sum_probs=165.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCcee--EEEeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v--~~~~~~~~~~VssLafSpdg~~lLaSGs~--DGtI~IWDl~t~~~~v~~   76 (633)
                      +|+|+|++||+|+.||.|+|||+.+++..  ..+.. |...|.+++|+|++. +|++++.  +..++||++...+. ...
T Consensus        65 ~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~-~~~  141 (311)
T d1nr0a1          65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTS-NGN  141 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC-SSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCB-CBC
T ss_pred             EEeCCCCeEeccccCceEeeeeeecccccccccccc-ccCcccccccccccc-ccccccccccccccccccccccc-ccc
Confidence            48999999999999999999999887654  34554 567889999999998 6777765  56699999988774 567


Q ss_pred             eccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743           77 LKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      +.+|...|++++|+|+++ .|++|+.|+.|++||+++++....+ .|...|.+++|+|++++|++++.||.|++||.++.
T Consensus       142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccc
Confidence            889999999999999877 4888999999999999998887777 58899999999999999999999999999999886


Q ss_pred             CCceEEEe-----ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743          155 PQPLTVLR-----ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (633)
Q Consensus       155 ~k~v~~l~-----~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s  215 (633)
                      . ....+.     ..+|...|++++|+|+++            +|++++.|+.|+|||++......
T Consensus       222 ~-~~~~~~~~~~~~~~h~~~V~~~~~s~~~~------------~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         222 T-KTGVFEDDSLKNVAHSGSVFGLTWSPDGT------------KIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             C-EEEECBCTTSSSCSSSSCEEEEEECTTSS------------EEEEEETTSEEEEEETTTTEEEE
T ss_pred             c-ccccccccccccccccccccccccCCCCC------------EEEEEeCCCeEEEEECCCCcEEE
Confidence            3 223332     236889999999999544            45556789999999997655433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.5e-24  Score=209.28  Aligned_cols=188  Identities=14%  Similarity=0.264  Sum_probs=166.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      |+++++.+++++.|+.+++||+.+++.+..+.. +...+.+++|++++. +|++++.|+.|++|++..... ...+..|.
T Consensus       109 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~-~~~~~~~~  185 (317)
T d1vyhc1         109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKEC-KAELREHR  185 (317)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EEEECCCS
T ss_pred             ccCCCceEEeeccCcceeEeecccceeeeEEcc-CCCcceeeecccCCC-EEEEEeCCCeEEEEeecccee-eEEEecCC
Confidence            688999999999999999999999999988886 566788899999987 899999999999999998874 56788999


Q ss_pred             CCeEEEEEcCC--------------------CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEE
Q 006743           82 APTAGISFSSD--------------------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAG  140 (633)
Q Consensus        82 ~~VtsLafSPd--------------------g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatG  140 (633)
                      ..|.+++|+|+                    +.++++++.|+.|++||+++++++..+ .|...|.+++|+|++++|++|
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            99999999875                    357899999999999999999988777 589999999999999999999


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743          141 TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       141 s~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      +.||.|+|||+++. +++..+.  +|.+.|++++|+|++++            |++++.|+.|+|||
T Consensus       266 ~~dg~i~iwd~~~~-~~~~~~~--~h~~~V~~~~~s~~~~~------------l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADDKTLRVWDYKNK-RCMKTLN--AHEHFVTSLDFHKTAPY------------VVTGSVDQTVKVWE  317 (317)
T ss_dssp             ETTTEEEEECCTTS-CCCEEEE--CCSSCEEEEEECSSSSC------------EEEEETTSEEEEEC
T ss_pred             ECCCeEEEEECCCC-cEEEEEc--CCCCCEEEEEEcCCCCE------------EEEEeCCCeEEEeC
Confidence            99999999999987 4566666  79999999999996554            45557799999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.1e-24  Score=225.93  Aligned_cols=199  Identities=14%  Similarity=0.180  Sum_probs=163.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l   77 (633)
                      +|+|||++||+|+.||.|+|||+.+++  .+..+.+ |...|.+|+|+|+++ +|++|+.|+.|+|||+.+.... ...+
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~   91 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVI   91 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCC-EEEEEECCCeEEEEeeccccccccccc
Confidence            589999999999999999999998775  4566666 677899999999998 8999999999999999766532 3456


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr  152 (633)
                      ..|...|.+++|+|++++|++++.|++|++|++.........     .|...|.+++|+|++.+|++|+.||.|++||..
T Consensus        92 ~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_          92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeec
Confidence            788999999999999999999999999999998765433222     378899999999999999999999999999987


Q ss_pred             CCCC---------------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          153 GKPQ---------------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       153 s~~k---------------~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ....               .........|...|.+++|+|++++            +++++.|+.|++||+.....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~------------l~s~~~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR------------VAWVSHDSTVCLADADKKMA  235 (371)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE------------EEEEETTTEEEEEEGGGTTE
T ss_pred             cCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc------------ccccccCCcceEEeeecccc
Confidence            5321               1123344578999999999996554            44557799999999865443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-24  Score=220.13  Aligned_cols=189  Identities=11%  Similarity=0.078  Sum_probs=165.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|++++.++++++.|+.|++|++.+++....... +...+.+++|++++. .+++|+.|+.|++||+++.+. + ....|
T Consensus       148 ~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~-~-~~~~~  223 (337)
T d1gxra_         148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQ-L-QQHDF  223 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-E-EEEEC
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccc-cccccccccccccccccccee-e-ccccc
Confidence            3789999999999999999999999888877765 667789999999987 899999999999999988773 2 34468


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      ...|.+++|+|++++|++++.|+.|++||+++++......|...|.+++|+|++++|++|+.||.|++||+.+++ .+..
T Consensus       224 ~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~-~~~~  302 (337)
T d1gxra_         224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQ  302 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred             ccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEE
Confidence            899999999999999999999999999999999888878899999999999999999999999999999999874 3333


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                         ..|...|.+++|+|++++            |++++.|+.|+|||+.
T Consensus       303 ---~~~~~~v~~~~~s~d~~~------------l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         303 ---SKESSSVLSCDISVDDKY------------IVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ---EECSSCEEEEEECTTSCE------------EEEEETTSCEEEEEEE
T ss_pred             ---ccCCCCEEEEEEeCCCCE------------EEEEeCCCeEEEEEEE
Confidence               358899999999996544            5555779999999973

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=2e-24  Score=214.07  Aligned_cols=198  Identities=17%  Similarity=0.214  Sum_probs=160.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-------   73 (633)
                      +|+|+|++|++|+.||.|++||+++++.+..+...|...|.+++|+|++.  +++++.|+.+++|+.......       
T Consensus        19 ~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~~~~~~~~~~~~~~~~~~   96 (299)
T d1nr0a2          19 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVAN   96 (299)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce--eecccceeeEEEeccCCccccccccccc
Confidence            58999999999999999999999999998888777888999999999986  667788999999997432200       


Q ss_pred             -----e--------------------EE-------eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--Ee
Q 006743           74 -----V--------------------SW-------LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CI  119 (633)
Q Consensus        74 -----v--------------------~~-------l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~--~i  119 (633)
                           .                    ..       .......+.+++|+|++++|++|+.|+.|++||+++++...  ..
T Consensus        97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~  176 (299)
T d1nr0a2          97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI  176 (299)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 0                    00       01123467889999999999999999999999998876543  34


Q ss_pred             eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeC
Q 006743          120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV  199 (633)
Q Consensus       120 ~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~  199 (633)
                      .|...|.+++|+|++.+|++++.||.|++||+.+...........+|...|++++|+|++++            +++++.
T Consensus       177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~------------l~sgs~  244 (299)
T d1nr0a2         177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR------------LATGSL  244 (299)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE------------EEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------eEEEcC
Confidence            68999999999999999999999999999999876433333333478999999999996554            555678


Q ss_pred             CCeEEccCCCCCC
Q 006743          200 GDSILMPDPLPSV  212 (633)
Q Consensus       200 Dg~IkIWDlr~~~  212 (633)
                      |+.|++||+....
T Consensus       245 dg~i~iwd~~~~~  257 (299)
T d1nr0a2         245 DNSVIVWNMNKPS  257 (299)
T ss_dssp             TSCEEEEETTCTT
T ss_pred             CCEEEEEECCCCC
Confidence            9999999986543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-23  Score=214.14  Aligned_cols=193  Identities=17%  Similarity=0.184  Sum_probs=167.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+|+|++|++|+.||.|++||+....  ....+.. +...+.+++|+|++. ++++++.|+.|++||+.+.+. .....
T Consensus       104 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~-~~~~~  180 (337)
T d1gxra_         104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTL-VRQFQ  180 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEEC
T ss_pred             EEcCCCCEEEEeeccccccccccccccccccccccc-ccccccccccccccc-ccccccccccccccccccccc-ccccc
Confidence            589999999999999999999987543  4455554 667788899999987 899999999999999998774 56678


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      .|...|.+++|++++..+++++.|+.|++||+++++.+..+.+...|.+++|+|++++|++|+.||.|++||++....  
T Consensus       181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~--  258 (337)
T d1gxra_         181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--  258 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccc--
Confidence            899999999999999999999999999999999999999899999999999999999999999999999999998742  


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                        +....|...|++++|+|++++            +++++.|+.|++||+....
T Consensus       259 --~~~~~~~~~i~~v~~s~~g~~------------l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         259 --YQLHLHESCVLSLKFAYCGKW------------FVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             --EEECCCSSCEEEEEECTTSSE------------EEEEETTSEEEEEETTTCC
T ss_pred             --ccccccccccceEEECCCCCE------------EEEEeCCCeEEEEECCCCC
Confidence              344579999999999996554            4556779999999986443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.2e-23  Score=212.80  Aligned_cols=194  Identities=18%  Similarity=0.279  Sum_probs=159.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-----------------CCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD-----------------PNEQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-----------------~~~~~VssLafSpdg~~lLaSGs~DGtI~   63 (633)
                      +|+|||++||+|+ |+.|+|||+.+++.+..+..                 .+...|.+|+|+|+++ +|++|+.||.|+
T Consensus        69 ~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~  146 (388)
T d1erja_          69 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIR  146 (388)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             EECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC-cceecccccccc
Confidence            5899999999986 89999999999988776643                 2455689999999998 899999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEec-CCCEEEEEEc
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTS  142 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSP-dG~~LatGs~  142 (633)
                      +||....+. +....+|...|.+++|++++..+++++.++.|++||+++........+.....++.+.+ ++.+|++|+.
T Consensus       147 i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  225 (388)
T d1erja_         147 IWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  225 (388)
T ss_dssp             EEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             ccccccccc-ccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC
Confidence            999988774 56778999999999999999999999999999999999988887777777777777766 7899999999


Q ss_pred             CCeEEEEECCCCCCceEEEe-----ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          143 NGRVVFYDIRGKPQPLTVLR-----ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       143 DGsV~IWDlrs~~k~v~~l~-----~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      ||.|++||.++... ...+.     ..+|...|.+++|+|++++|++            ++.|+.|++||++.
T Consensus       226 d~~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s------------~~~d~~i~iwd~~~  285 (388)
T d1erja_         226 DRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQSVVS------------GSLDRSVKLWNLQN  285 (388)
T ss_dssp             TSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSSEEEE------------EETTSEEEEEEC--
T ss_pred             CCeEEEeecccCcc-ceeeccccccccCCCCCEEEEEECCCCCEEEE------------EECCCcEEEEeccC
Confidence            99999999998743 22221     2368899999999997655544            45567777777653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=1.1e-23  Score=214.98  Aligned_cols=193  Identities=13%  Similarity=0.163  Sum_probs=163.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~   79 (633)
                      +++|+|+.|+.+. ++.|.+||+.++.....+.+ |...|.+++|+|+++ +|++|+.||+|+|||+...... ...+..
T Consensus        24 a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~~~~~~~~~~~~  100 (311)
T d1nr0a1          24 GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPV  100 (311)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             EEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC-CCCCEEEEEEeCCCC-eEeccccCceEeeeeeecccccccccccc
Confidence            4789999999885 66799999999988888876 677899999999997 8999999999999999877643 355788


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCCC
Q 006743           80 HSAPTAGISFSSDDKIIASVGLD--KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWI-LTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~D--GtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~-LatGs~DGsV~IWDlrs~~  155 (633)
                      |...|.+++|+|++++|++++.+  +.+++||+++++....+ .|...|.+++|+|++.+ |++|+.||.|++||+++. 
T Consensus       101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-  179 (311)
T d1nr0a1         101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-  179 (311)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-
T ss_pred             ccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccc-
Confidence            99999999999999999999864  56999999998877766 58889999999999875 788999999999999986 


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +....+.  .|...|++++|+|++++            +++++.|+.|++||++..
T Consensus       180 ~~~~~~~--~~~~~i~~v~~~p~~~~------------l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         180 KFKSTFG--EHTKFVHSVRYNPDGSL------------FASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             EEEEEEC--CCSSCEEEEEECTTSSE------------EEEEETTSCEEEEETTTC
T ss_pred             ccccccc--cccccccccccCccccc------------cccccccccccccccccc
Confidence            3334443  78999999999996554            455577999999998653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2e-23  Score=213.08  Aligned_cols=199  Identities=16%  Similarity=0.198  Sum_probs=150.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC------------------------------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR------------------------------   50 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~------------------------------   50 (633)
                      +|+|+|++|++|+.||.|++||...++.+..+.+ |...|.+++|++++.                              
T Consensus       128 ~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  206 (388)
T d1erja_         128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG  206 (388)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             EECCCCCcceeccccccccccccccccccccccc-ccccccccccccccccccccccceeeeeeeccccccccccccccc
Confidence            4899999999999999999999998888777765 445566666665544                              


Q ss_pred             -----------eEEEEEeCCCeEEEEECCCCCcee------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 006743           51 -----------HLLVTAGDDGTLHLWDTTGRSPKV------SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR  113 (633)
Q Consensus        51 -----------~lLaSGs~DGtI~IWDl~t~~~~v------~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg  113 (633)
                                 .+|++|+.||.|++||..+.....      ....+|...|++++|+|++++|++++.|+.|++||++++
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence                       244445555555555554433211      123457889999999999999999999999999999765


Q ss_pred             cee-------------eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC
Q 006743          114 RPS-------------SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP  180 (633)
Q Consensus       114 k~v-------------~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~  180 (633)
                      ...             ....|...|.+++|+|++++|++|+.||.|++||++++ +++..+.  +|.+.|+++++.+.. 
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~l~--~H~~~V~~~~~~~~~-  362 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQ--GHRNSVISVAVANGS-  362 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEE--CCSSCEEEEEECSSC-
T ss_pred             ccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEe--CCCCCEEEEEEecCc-
Confidence            432             12247889999999999999999999999999999987 4556665  899999999987632 


Q ss_pred             eEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          181 VFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       181 ~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                           ....++.+|++++.|+.|+|||++
T Consensus       363 -----~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         363 -----SLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             -----TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             -----ccCCCCCEEEEEeCCCEEEEEeee
Confidence                 134577888999999999999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.5e-23  Score=215.45  Aligned_cols=181  Identities=8%  Similarity=0.055  Sum_probs=150.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEe-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---eEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---VSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~-~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~---v~~   76 (633)
                      +|+|++++|++|+.|+.|+|||+.++.....+. ..+...|.+++|+|+++ .|++|+.|+.|++|++......   ...
T Consensus        58 ~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~  136 (371)
T d1k8kc_          58 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHI  136 (371)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccc-cceeecccCcceeeeeeccccccccccc
Confidence            489999999999999999999998776544432 23667899999999998 8999999999999998665532   344


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------------------eeeE-eeCCCCeEEEEEecCCCEE
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR------------------PSSC-ITYEAPFSSLAFIDDDWIL  137 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk------------------~v~~-i~h~~~ItsLafSPdG~~L  137 (633)
                      ...|...|.+++|+|++++|++|+.|+.|++||+....                  .... ..|...|.+++|+|++++|
T Consensus       137 ~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  216 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  216 (371)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc
Confidence            56789999999999999999999999999999986432                  1122 2477889999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ++++.|+.|++||+... +.+..+.  .|..+|.+++|+|++++++++
T Consensus       217 ~s~~~d~~i~iwd~~~~-~~~~~~~--~~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         217 AWVSHDSTVCLADADKK-MAVATLA--SETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             EEEETTTEEEEEEGGGT-TEEEEEE--CSSCCEEEEEEEETTEEEEEE
T ss_pred             cccccCCcceEEeeecc-cceeeee--cccccceeeeecCCCCEEEEE
Confidence            99999999999999887 3444444  789999999999998888765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.7e-23  Score=199.52  Aligned_cols=206  Identities=16%  Similarity=0.218  Sum_probs=176.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+|++++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|++++. +++++..++.+.+|+...... ...+..|
T Consensus        24 ~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  100 (317)
T d1vyhc1          24 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC-IRTMHGH  100 (317)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE-EECCCCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeecccc-ccccccccccccccccccccc-ccccccc
Confidence            4899999999999999999999999999999986 667889999999998 899999999999999987774 5667889


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      ...+.++.|+++++.+++++.|+.+++||+++++.+..+ .|...+.+++|++++.+|++++.|+.|++|++++.. ...
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~  179 (317)
T d1vyhc1         101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKA  179 (317)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEE
T ss_pred             cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce-eeE
Confidence            999999999999999999999999999999999888776 588899999999999999999999999999999873 344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEe--------ccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDE--------TTCKAETALLGGAVGDSILMPDPLPSV  212 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~--------s~~sd~~lLlSgs~Dg~IkIWDlr~~~  212 (633)
                      .+.  +|...+.+++|+|++......        .....+.++++++.|+.|++||++...
T Consensus       180 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  238 (317)
T d1vyhc1         180 ELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  238 (317)
T ss_dssp             EEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEe--cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc
Confidence            444  789999999999976543321        123355678889999999999986543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.3e-22  Score=202.28  Aligned_cols=195  Identities=13%  Similarity=0.173  Sum_probs=155.6

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--E
Q 006743            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--W   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~--DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~--~   76 (633)
                      +|+++|++|++++.  ++.+.+|++.+++.+..+.+ |...|.+++|+|++..++++++.|+.|++||....+....  .
T Consensus       122 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~  200 (325)
T d1pgua1         122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  200 (325)
T ss_dssp             EECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCS-CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             EECCCCCccceeeccccceEEEEeecccccceeeee-cccccccccccccccceEEEeecccccccccccccccceeccc
Confidence            48899999988764  67899999999999988876 6677889999999887788999999999999977653222  2


Q ss_pred             eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEe---cCCCEEEEEEcCCeEEEEEC
Q 006743           77 LKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFI---DDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        77 l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafS---PdG~~LatGs~DGsV~IWDl  151 (633)
                      ...|...|++++|+|+ +.+|++++.|+.|++||+++++.+..+ .|...+.++.|+   |+|++|++++.|+.|+|||+
T Consensus       201 ~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence            3467788999999995 789999999999999999999988877 466666555554   68999999999999999999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +++ +++..+....|...+..++|.+.           +..++++++.|+.|++||+
T Consensus       281 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         281 TTS-KCVQKWTLDKQQLGNQQVGVVAT-----------GNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTT-EEEEEEECCTTCGGGCEEEEEEE-----------ETTEEEEEETTSCEEEEET
T ss_pred             CCC-CEEEEEEecCCcccCeEEEEEEC-----------CCCEEEEEECCCEEEEEEC
Confidence            987 55666664455545555555432           2335678888999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.88  E-value=1.6e-21  Score=192.97  Aligned_cols=188  Identities=13%  Similarity=0.245  Sum_probs=147.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +|+++|+++++++ ++.+++|+..  +.. ...  ....+.+++|+|++. +|++|+.||.|++||+++..........|
T Consensus       106 ~~s~~g~~~~~~~-~~~i~~~~~~--~~~-~~~--~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~  178 (299)
T d1nr0a2         106 AVSADGDIAVAAC-YKHIAIYSHG--KLT-EVP--ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVH  178 (299)
T ss_dssp             EECTTSSCEEEEE-SSEEEEEETT--EEE-EEE--CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEEC
T ss_pred             ccccccccccccc-cccccccccc--ccc-ccc--ccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            3678888776654 6689999853  222 222  234567899999987 89999999999999998776444455678


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k  156 (633)
                      ...|++++|+|++++|++++.|+.|++||+.++......    .|...|.+++|+|++.+|++|+.||.|++||+++...
T Consensus       179 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            999999999999999999999999999999887655332    4788999999999999999999999999999998654


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .........+...|.++.|.+             +.+|++++.|+.|++||+
T Consensus       259 ~~~~~~~~~~~~~v~~~~~~~-------------~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         259 HPIIIKGAHAMSSVNSVIWLN-------------ETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             CCEEETTSSTTSCEEEEEEEE-------------TTEEEEEETTSCEEEEEC
T ss_pred             ceEEEecCCCCCcEEEEEECC-------------CCEEEEEeCCCEEEEEec
Confidence            433333334456677776643             235667788999999998

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=8.6e-22  Score=200.71  Aligned_cols=198  Identities=14%  Similarity=0.104  Sum_probs=154.5

Q ss_pred             CccC--CCCEEEEEECCCcEEEEECCCCceeE--------EEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECC
Q 006743            1 MYNC--KDEHLASISLSGDLILHNLASGAKAA--------ELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTT   68 (633)
Q Consensus         1 AFSp--dG~~LaSgs~DG~I~IWDl~tgk~v~--------~~~~~~~~~VssLafSpdg~~lLaSGs--~DGtI~IWDl~   68 (633)
                      +|+|  +|++|++|+.||+|+|||+..++...        .+. .+...|.+++|++++. +|++++  .++.+++|+..
T Consensus        70 ~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~  147 (325)
T d1pgua1          70 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWD  147 (325)
T ss_dssp             EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETT
T ss_pred             EEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCC-ccceeeccccceEEEEeec
Confidence            4776  67899999999999999987654322        223 3567789999999998 555544  47789999998


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecC-CCEEEEEEc
Q 006743           69 GRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDD-DWILTAGTS  142 (633)
Q Consensus        69 t~~~~v~~l~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPd-G~~LatGs~  142 (633)
                      +++. +..+.+|...|.+++|+|++. ++++++.|+.|++||++..+.....    .+...|.+++|+|+ +.+|++++.
T Consensus       148 ~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~  226 (325)
T d1pgua1         148 SGNS-LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  226 (325)
T ss_dssp             TCCE-EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             cccc-ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc
Confidence            8774 677889999999999999765 5788999999999999887765544    36788999999996 689999999


Q ss_pred             CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       143 DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ||.|++||+++. +.+..+.  +|...+.++.|+.         ...++.+|++++.|+.|+|||+.....
T Consensus       227 d~~i~iwd~~~~-~~~~~l~--~~~~~v~~~~~s~---------~~~dg~~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         227 DRKISCFDGKSG-EFLKYIE--DDQEPVQGGIFAL---------SWLDSQKFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             TCCEEEEETTTC-CEEEECC--BTTBCCCSCEEEE---------EESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ccceeeeeeccc-ccccccc--ccccccccceeee---------eccCCCEEEEEeCCCeEEEEECCCCCE
Confidence            999999999987 3445554  6777776666653         112456677888999999999975443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.7e-21  Score=203.02  Aligned_cols=197  Identities=16%  Similarity=0.207  Sum_probs=148.5

Q ss_pred             CCEEEEEECCCcEEEEECCCCc---------------eeEEEe--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006743            6 DEHLASISLSGDLILHNLASGA---------------KAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk---------------~v~~~~--~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~   68 (633)
                      +.++++++.||.|++|++....               ......  ..+...+.+++|+|++  +|++|+.||+|+|||+.
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~  213 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELS  213 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeec
Confidence            5688999999999999974321               011111  1234557889999986  79999999999999998


Q ss_pred             CCCcee-----EEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEe--------------eCCCCeE
Q 006743           69 GRSPKV-----SWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCI--------------TYEAPFS  126 (633)
Q Consensus        69 t~~~~v-----~~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i--------------~h~~~It  126 (633)
                      +.+...     ..+.+|...|++++|+|++++|++|+.|+   .|++||+++++.+..+              +|...|+
T Consensus       214 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~  293 (393)
T d1sq9a_         214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM  293 (393)
T ss_dssp             TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred             ccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence            776431     23467999999999999999999999987   4999999998876654              4888999


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCee----EEEEccCCCeEEEec---------------c
Q 006743          127 SLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVS----SLCWQRAKPVFIDET---------------T  187 (633)
Q Consensus       127 sLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~Vt----sLafsPdg~~Las~s---------------~  187 (633)
                      +++|+|++++|++|+.|++|+|||++++ +++..+.  +|.+.|.    .++|.+++..++.++               .
T Consensus       294 ~l~fspd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~--gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T d1sq9a_         294 SLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN--MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG  370 (393)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE--CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred             eeccCCCCCeeEEECCCCEEEEEECCCC-CEEEEEC--CcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccc
Confidence            9999999999999999999999999987 5666666  7877665    467777766654321               0


Q ss_pred             CCCCeEEEEeeCCCeEEccC
Q 006743          188 CKAETALLGGAVGDSILMPD  207 (633)
Q Consensus       188 ~sd~~lLlSgs~Dg~IkIWD  207 (633)
                      ......+++.+.|+.|++|.
T Consensus       371 ~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         371 ADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             CTTSCEEEEEETTTEEEEEE
T ss_pred             cCCCCEEEEEEcCCeEEEEe
Confidence            11223456666677777763

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.8e-20  Score=181.79  Aligned_cols=190  Identities=16%  Similarity=0.188  Sum_probs=146.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------   73 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--------   73 (633)
                      ++++|++||+|+.||.|+|||+.+++.+..+.+ |...|.+++|+++   +|++|+.|+.+++|+.......        
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~   98 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTS   98 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCCC---ccccceecccccccccccccceecccccce
Confidence            677899999999999999999999999999987 6677889999864   7999999999988886432110        


Q ss_pred             -----------------------------------------------------------------------eEEeccCCC
Q 006743           74 -----------------------------------------------------------------------VSWLKQHSA   82 (633)
Q Consensus        74 -----------------------------------------------------------------------v~~l~~H~~   82 (633)
                                                                                             +..+.+|..
T Consensus        99 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  178 (342)
T d2ovrb2          99 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN  178 (342)
T ss_dssp             CEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred             eEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc
Confidence                                                                                   111223443


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l  161 (633)
                      .+.+  +.+++.+|++++.||.|++||++.++++..+ .|...+.++.++  +++|++|+.||.|++||+...+......
T Consensus       179 ~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~  254 (342)
T d2ovrb2         179 RVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ  254 (342)
T ss_dssp             CEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccc
Confidence            3433  4446889999999999999999999888776 578888888776  5699999999999999999874332222


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ....|...+.++.+++              .++++++.|+.|++||++....
T Consensus       255 ~~~~~~~~~~~~~~~~--------------~~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         255 GPNKHQSAVTCLQFNK--------------NFVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             STTSCSSCEEEEEECS--------------SEEEEEETTSEEEEEETTTCCE
T ss_pred             ccceeeeceeecccCC--------------CeeEEEcCCCEEEEEECCCCCE
Confidence            2335677788777754              3667778899999999975543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.5e-20  Score=184.07  Aligned_cols=190  Identities=13%  Similarity=0.108  Sum_probs=144.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H   80 (633)
                      ++++|++||+|+.||.|+|||+.+++.+..+.+ |...|.+|+|++++  +|++|+.|+.|++|+............ .+
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~   95 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS   95 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCCC--EEEEEecccccccccccccccccccccccc
Confidence            567899999999999999999999999999987 67789999999864  799999999999999987664322211 12


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------------------------------------
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------------------------------------------------  112 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt------------------------------------------------  112 (633)
                      ...+..+.+.+++.++++++.|+.|++||+++                                                
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (355)
T d1nexb2          96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV  175 (355)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEE
T ss_pred             cccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceee
Confidence            22234445556666777777777777776643                                                


Q ss_pred             ---------------CceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 006743          113 ---------------RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ  176 (633)
Q Consensus       113 ---------------gk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafs  176 (633)
                                     ++.+... .+...+.++.|++++.++++++.|+.|++||+++.. .+..+.  +|...|.+++|+
T Consensus       176 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~--~h~~~v~~~~~~  252 (355)
T d1nexb2         176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-LMYTLQ--GHTALVGLLRLS  252 (355)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC-EEEEEC--CCSSCCCEEEEC
T ss_pred             eecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc-cccccc--cccccccccccc
Confidence                           2222222 245667788999999999999999999999999873 444444  899999999986


Q ss_pred             cCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          177 RAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       177 Pdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      +              .++++++.|+.|++||+...
T Consensus       253 ~--------------~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         253 D--------------KFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             S--------------SEEEEECTTSEEEEEETTTC
T ss_pred             c--------------ceeeeeeccccccccccccc
Confidence            5              35677788999999998643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.3e-20  Score=186.39  Aligned_cols=147  Identities=14%  Similarity=0.182  Sum_probs=132.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-EeccC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~-~l~~H   80 (633)
                      +.+++.++++|+.|+.|++||+.+++.+..+.+ |...|.+++|+|++. +|++|+.||.|++||+........ ....|
T Consensus       192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~  269 (340)
T d1tbga_         192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNI  269 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred             cccccceeEEeecCceEEEEECCCCcEEEEEeC-CCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecccccccccccccc
Confidence            456788999999999999999999999999886 667889999999997 899999999999999987764322 23466


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      ...|.+++|+|++++|++|+.||.|++||+.+++++..+ +|.+.|.+++|+|++.+|++|+.||.|+|||
T Consensus       270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            778999999999999999999999999999999998887 5899999999999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-19  Score=172.95  Aligned_cols=185  Identities=19%  Similarity=0.283  Sum_probs=144.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------   73 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-------   73 (633)
                      ++++||++||+|+.||.|+|||+.+++.+..+.+ |...|.+|+|+  ++ +|++|+.|+.|++|++......       
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v~~~--~~-~l~s~s~D~~i~~~~~~~~~~~~~~~~~~   95 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQYD--ER-VIITGSSDSTVRVWDVNTGEMLNTLIHHC   95 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEECC--SS-EEEEEETTSCEEEEESSSCCEEEEECCCC
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeeeecc--cc-eeecccccccccccccccccccccccccc
Confidence            3678999999999999999999999999999986 66678888874  44 8999999999999998654321       


Q ss_pred             -----------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 006743           74 -----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC  118 (633)
Q Consensus        74 -----------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~  118 (633)
                                                         ...+..|...|.++.+.  ...+++++.|+.|++||+++++.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~  173 (293)
T d1p22a2          96 EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRT  173 (293)
T ss_dssp             SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEE
Confidence                                               11234456666666665  56788999999999999999988877


Q ss_pred             e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006743          119 I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG  197 (633)
Q Consensus       119 i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg  197 (633)
                      + .+...+..+.++  +.++++++.||.|++||+++.. .+....  +|...+..+.  +            +..+++++
T Consensus       174 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~--~~~~~v~~~~--~------------~~~~l~sg  234 (293)
T d1p22a2         174 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRVLE--GHEELVRCIR--F------------DNKRIVSG  234 (293)
T ss_dssp             EECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-EEEEEC--CCSSCEEEEE--C------------CSSEEEEE
T ss_pred             EcccccccccccCC--CCeEEEecCCCEEEEEecccce-eeeeec--ccceeeeecc--c------------cceEEEEE
Confidence            6 467778777765  6799999999999999999873 334333  6777766543  2            34567778


Q ss_pred             eCCCeEEccCCCC
Q 006743          198 AVGDSILMPDPLP  210 (633)
Q Consensus       198 s~Dg~IkIWDlr~  210 (633)
                      +.|+.|++||+..
T Consensus       235 ~~dg~i~iwd~~~  247 (293)
T d1p22a2         235 AYDGKIKVWDLVA  247 (293)
T ss_dssp             ETTSCEEEEEHHH
T ss_pred             cCCCEEEEEECCC
Confidence            8899999999753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4.3e-20  Score=180.43  Aligned_cols=155  Identities=13%  Similarity=0.080  Sum_probs=120.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEe--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~--~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+|++++||+|+.||+|+|||+..+.....+.  ..|...|.+++|++++..+|++|+.||.|++|++...........
T Consensus        18 ~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~   97 (342)
T d1yfqa_          18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN   97 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred             EEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccc
Confidence            589999999999999999999997665433222  136788999999998777899999999999999988775444444


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl  151 (633)
                      .+........+.++...+++++.|+.+++||++.+......       ........+.+.+++..+++++.||.|++||+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  177 (342)
T d1yfqa_          98 NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL  177 (342)
T ss_dssp             CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEES
T ss_pred             cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEec
Confidence            44445555666668999999999999999999764433222       12334566778888999999999999999999


Q ss_pred             CCCC
Q 006743          152 RGKP  155 (633)
Q Consensus       152 rs~~  155 (633)
                      +...
T Consensus       178 ~~~~  181 (342)
T d1yfqa_         178 PLCE  181 (342)
T ss_dssp             SCCT
T ss_pred             ccCc
Confidence            8654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1e-19  Score=179.58  Aligned_cols=184  Identities=17%  Similarity=0.201  Sum_probs=146.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      +.+++++++++..|+.|++||+.+++.+..+.+ +...+.++.|++++. ++++++.|+.|++||+.+... +..+.+|.
T Consensus       167 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~  243 (355)
T d1nexb2         167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGEL-MYTLQGHT  243 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCE-EEEECCCS
T ss_pred             cccccceeeeecccceeeeeecccccceeeeec-cccccccccccccce-eeecccccceEEeeecccccc-cccccccc
Confidence            345788999999999999999999998888776 445567789999988 899999999999999998874 67789999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l  161 (633)
                      ..|.+++|+  +++|++++.||.|++||+++........+........+++++.+|++| .||.|+|||+++++.....+
T Consensus       244 ~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~  320 (355)
T d1nexb2         244 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANI  320 (355)
T ss_dssp             SCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCT
T ss_pred             ccccccccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEe
Confidence            999999997  579999999999999999987765444333333334566777776665 58999999999874322222


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcc
Q 006743          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIW  206 (633)
                        .+|.+.|.+++|+|+             .++++++.||.++||
T Consensus       321 --~~~~~~V~~v~~~~~-------------~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         321 --LKDADQIWSVNFKGK-------------TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             --TTTCSEEEEEEEETT-------------EEEEEEESSSCEEEE
T ss_pred             --cCCCCCEEEEEEcCC-------------eEEEEEECCCcEEEE
Confidence              378999999999873             345666778886665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.7e-20  Score=192.88  Aligned_cols=197  Identities=16%  Similarity=0.184  Sum_probs=146.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeE-----EEeC----CCCCcEEEEEEccCC----CeEEEEEeCCCeEEEEECCCCCc
Q 006743            6 DEHLASISLSGDLILHNLASGAKAA-----ELKD----PNEQVLRVLDYSRNS----RHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         6 G~~LaSgs~DG~I~IWDl~tgk~v~-----~~~~----~~~~~VssLafSpdg----~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      +.++++++.||.|++|++.......     ....    .+...+..++|.++.    ..++++++.||.|++||+.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            3467889999999999976443211     1111    123346667887764    24789999999999999842210


Q ss_pred             e-----------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-------eCCCCeEEE
Q 006743           73 K-----------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-------TYEAPFSSL  128 (633)
Q Consensus        73 ~-----------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-------~h~~~ItsL  128 (633)
                      .                 ......+...+++++|+|++ +|++|+.|++|++||+++++++..+       .|..+|.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence            0                 11223456679999999987 8999999999999999998876544       378899999


Q ss_pred             EEecCCCEEEEEEcCC---eEEEEECCCCCCceEEEe-----------ecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 006743          129 AFIDDDWILTAGTSNG---RVVFYDIRGKPQPLTVLR-----------ACSSSEAVSSLCWQRAKPVFIDETTCKAETAL  194 (633)
Q Consensus       129 afSPdG~~LatGs~DG---sV~IWDlrs~~k~v~~l~-----------~~~H~~~VtsLafsPdg~~Las~s~~sd~~lL  194 (633)
                      +|+|+|++|++|+.|+   .|++||++++. .+..+.           ..+|.+.|++++|+|+++            +|
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~-~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~------------~l  304 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE------------TL  304 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSS------------EE
T ss_pred             ccccccceeeeecCCCCcceeeecccccce-eeeeeccccccccceeeeecccCceeeeccCCCCC------------ee
Confidence            9999999999999987   49999999863 333332           237999999999999554            45


Q ss_pred             EEeeCCCeEEccCCCCCCCCCc
Q 006743          195 LGGAVGDSILMPDPLPSVTTSS  216 (633)
Q Consensus       195 lSgs~Dg~IkIWDlr~~~~~ss  216 (633)
                      ++++.|+.|++||+........
T Consensus       305 ~S~s~D~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKERITT  326 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEEEECCCCCEEEE
Confidence            6668899999999976554433

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=8.1e-20  Score=182.93  Aligned_cols=188  Identities=12%  Similarity=0.200  Sum_probs=152.4

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEecc
Q 006743            2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         2 FSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG-tI~IWDl~t~~~~v~~l~~   79 (633)
                      ||| ||+++|+++ +|.|++||+.++..++ +  .|...|.+++|+|+|+.+++++..++ .|++||..+++  ...+..
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~~~~   83 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKFEE   83 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEECCC
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEEeeC
Confidence            899 999999886 5799999998776654 3  36778999999999984444454543 79999999887  567889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEE----------cCCeEEE
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT----------SNGRVVF  148 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs----------~DGsV~I  148 (633)
                      |...|.+++|+|++++|++++.++.+++||+.+++....+ .+...+.+++|+|||++|+.+.          .++.+++
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence            9999999999999999999999999999999999887776 4778899999999999998654          3456999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (633)
Q Consensus       149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~  211 (633)
                      ||+.+.+    ......|...+.+++|+|+|++|+.+            +.|+.+++||....
T Consensus       164 ~d~~~~~----~~~~~~~~~~~~~~~~spdg~~l~~~------------s~~~~~~~~d~~~~  210 (360)
T d1k32a3         164 YDMEGRK----IFAATTENSHDYAPAFDADSKNLYYL------------SYRSLDPSPDRVVL  210 (360)
T ss_dssp             EETTTTE----EEECSCSSSBEEEEEECTTSCEEEEE------------ESCCCCCEECSSSS
T ss_pred             eccccCc----eeeecccccccccccccCCCCEEEEE------------eCCCceEccccccc
Confidence            9998862    23334677889999999976666544            56888888887543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.6e-19  Score=177.55  Aligned_cols=175  Identities=14%  Similarity=0.213  Sum_probs=132.5

Q ss_pred             CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC-CeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 006743           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD   92 (633)
Q Consensus        14 ~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D-GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPd   92 (633)
                      .++.+.+|+..+++.+..+..  ...+  .++++++. .+++++.| +.|++|++............|...|++++|+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  173 (287)
T d1pgua2          99 NDDDLLILQSFTGDIIKSVRL--NSPG--SAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS  173 (287)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC--SSCE--EEEEECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT
T ss_pred             ecccceeeeccceeeeeeccc--ccee--eeeeccCc-ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccC
Confidence            344455555555555555542  2222  35667777 45555554 579999997665444444567889999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecC----------CCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743           93 DKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDD----------DWILTAGTSNGRVVFYDIRGKPQPLTV  160 (633)
Q Consensus        93 g~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPd----------G~~LatGs~DGsV~IWDlrs~~k~v~~  160 (633)
                      +.+|++|+.||.|++||+.+++.....  .|...|.+++|+|+          +.+|++|+.|+.|+|||+++..+.+..
T Consensus       174 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~  253 (287)
T d1pgua2         174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  253 (287)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             ccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence            999999999999999999988765432  68899999999874          568999999999999999886555555


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +.  +|...|++++|+|++             .+++++.|+.|++||+
T Consensus       254 ~~--~h~~~V~~v~~~~~~-------------~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LN--AHKDGVNNLLWETPS-------------TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT--SSTTCEEEEEEEETT-------------EEEEEETTSCEEEEEE
T ss_pred             eC--CCCCCeEEEEECCCC-------------EEEEEECCCeEEEEEE
Confidence            54  899999999999842             3566678999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.3e-19  Score=171.73  Aligned_cols=185  Identities=15%  Similarity=0.184  Sum_probs=145.7

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~   83 (633)
                      .....+++++.|+.|++||....+.+..+.++ ...+.  .+.+++. +|++|+.||.|++||++..+. +..+..|...
T Consensus       145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~--~~~~~~~-~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~  219 (342)
T d2ovrb2         145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVY--SLQFDGI-HVVSGSLDTSIRVWDVETGNC-IHTLTGHQSL  219 (342)
T ss_dssp             ECSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEE--EEEECSS-EEEEEETTSCEEEEETTTCCE-EEEECCCCSC
T ss_pred             cccceeeeecCCCeEEEeecccceeeEEEcCc-ccccc--cccCCCC-EEEEEeCCCeEEEeeccccee-eeEecccccc
Confidence            45567889999999999999988888888764 44444  4455665 899999999999999998874 6778899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      |.+++++  +++|++++.|+.|++||+...+....+.    |...+.++.++  ++++++|+.||.|+|||+++++ .+.
T Consensus       220 v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~-~i~  294 (342)
T d2ovrb2         220 TSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE-FIR  294 (342)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-EEE
T ss_pred             eeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCC-EEE
Confidence            9998886  5699999999999999999888776652    45566666664  6799999999999999999874 444


Q ss_pred             EEee---cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC----eEEccCCCC
Q 006743          160 VLRA---CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD----SILMPDPLP  210 (633)
Q Consensus       160 ~l~~---~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg----~IkIWDlr~  210 (633)
                      .+..   .+|.+.|++++|+|++.++++            ++.||    .|++||+..
T Consensus       295 ~~~~~~~~~~~~~v~~v~~s~~~~~la~------------g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         295 NLVTLESGGSGGVVWRIRASNTKLVCAV------------GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEEE------------ECSSSSSCCEEEEEECCC
T ss_pred             EEecccCCCCCCCEEEEEECCCCCEEEE------------EeCCCCCeeEEEEEeCCC
Confidence            4432   357888999999996555444            44455    599999853

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.5e-18  Score=168.98  Aligned_cols=148  Identities=14%  Similarity=0.220  Sum_probs=126.3

Q ss_pred             ccCCCCEEEEEECCC-cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASISLSG-DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs~DG-~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      ++++++.+++++.++ .|++|++.+.+....+...+...+.+++|+|++. +|++|+.||.|++||+.+.......+..|
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h  204 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFR  204 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred             eeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeeccccccccccccc
Confidence            567888888888875 6999999877777777666778899999999998 89999999999999998887544557789


Q ss_pred             CCCeEEEEEcCC----------CCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           81 SAPTAGISFSSD----------DKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        81 ~~~VtsLafSPd----------g~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      ...|.+++|+|.          +.+|++|+.|++|++||++++ +.+..+ +|...|.+++|+|++ .|++++.||.|++
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~i  283 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKR  283 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEE
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEE
Confidence            999999999874          468999999999999999874 444444 699999999999986 6889999999999


Q ss_pred             EEC
Q 006743          149 YDI  151 (633)
Q Consensus       149 WDl  151 (633)
                      ||+
T Consensus       284 W~i  286 (287)
T d1pgua2         284 WNV  286 (287)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.7e-17  Score=157.45  Aligned_cols=182  Identities=18%  Similarity=0.274  Sum_probs=137.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEe------------------------------------------CCCCCc
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELK------------------------------------------DPNEQV   39 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~------------------------------------------~~~~~~   39 (633)
                      +++++++|++|+.||.|++|++..+.......                                          ..+...
T Consensus        61 v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (293)
T d1p22a2          61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  140 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             eecccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc
Confidence            35678899999999999999987654332211                                          112333


Q ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe
Q 006743           40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI  119 (633)
Q Consensus        40 VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i  119 (633)
                      +.++.+.+  . .+++++.|+.|++||+.+.+. +..+.+|...|..+.++  +.++++++.|+.|++||+++.+.+...
T Consensus       141 v~~~~~~~--~-~~~~~s~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         141 VNVVDFDD--K-YIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             EEEEEEET--T-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cccceecc--c-ccccccCCCceeeecCCCCcE-EEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee
Confidence            44344433  2 678899999999999998874 66788888889888876  678999999999999999999888776


Q ss_pred             e-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC--------CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743          120 T-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP--------QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (633)
Q Consensus       120 ~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~--------k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd  190 (633)
                      . +...+.+  +.+++.+|++|+.||.|++||++...        .++..+.  +|.+.|++++|++             
T Consensus       215 ~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~H~~~V~~v~~d~-------------  277 (293)
T d1p22a2         215 EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQFDE-------------  277 (293)
T ss_dssp             CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEECS-------------
T ss_pred             cccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec--CCCCCEEEEEEcC-------------
Confidence            4 5556654  56678999999999999999976421        2234443  8999999999854             


Q ss_pred             CeEEEEeeCCCeEEccC
Q 006743          191 ETALLGGAVGDSILMPD  207 (633)
Q Consensus       191 ~~lLlSgs~Dg~IkIWD  207 (633)
                       .+|++++.|+.|++||
T Consensus       278 -~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 -FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -SCEEECCSSSEEEEEC
T ss_pred             -CEEEEEecCCEEEEeC
Confidence             2467778899999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=1.8e-17  Score=165.57  Aligned_cols=148  Identities=16%  Similarity=0.048  Sum_probs=126.4

Q ss_pred             CccCCCCEEEEEECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|+|||++|++++.+.  .|++||+.+++.. .+.. +...+.+++|+|+++ +|++++.++.+++|++.+... ...+.
T Consensus        49 ~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~-~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~-~~~~~  124 (360)
T d1k32a3          49 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEE-NLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKP-TVIER  124 (360)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCC-CCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE-EEEEE
T ss_pred             EECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeC-CCceEEeeeeccccc-ccceeccccccccccccccce-eeeee
Confidence            5999999998876553  7999999877654 4443 667788999999998 899999999999999988874 56678


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           79 QHSAPTAGISFSSDDKIIASVG----------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS----------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                      .|...+.+++|+|++++|+.+.          .++.+++||+.+++......+...+.+++|+|||++|++++.++.+.+
T Consensus       125 ~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~  204 (360)
T d1k32a3         125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS  204 (360)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred             cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEc
Confidence            8889999999999999998654          345799999999888877788888999999999999999999999999


Q ss_pred             EECC
Q 006743          149 YDIR  152 (633)
Q Consensus       149 WDlr  152 (633)
                      ||..
T Consensus       205 ~d~~  208 (360)
T d1k32a3         205 PDRV  208 (360)
T ss_dssp             ECSS
T ss_pred             cccc
Confidence            9864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=4.2e-16  Score=151.69  Aligned_cols=169  Identities=12%  Similarity=0.051  Sum_probs=125.7

Q ss_pred             EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--eEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q 006743           32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--VSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTY  108 (633)
Q Consensus        32 ~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--v~~l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIW  108 (633)
                      +..+|.+.|++|+|+|+++ +|++|+.||+|+|||+......  .....+|..+|.+++|+|+ +.+|++|+.|+.|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            4456888899999999998 8999999999999999765532  2333479999999999985 5689999999999999


Q ss_pred             eCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cC--CCCCeeEEEEccCCCeEE
Q 006743          109 DPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CS--SSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       109 Dlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~-~~--H~~~VtsLafsPdg~~La  183 (633)
                      |+..........  +........+.++...+++++.|+.+++||++........... ..  +......+.+.+      
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  158 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT------  158 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE------
T ss_pred             ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec------
Confidence            999877665553  3444556667778899999999999999999764332222221 11  222334444444      


Q ss_pred             EeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          184 DETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       184 s~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                            ....++.++.|+.|++||++....
T Consensus       159 ------~~~~~~~~~~d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         159 ------NSSRLIVGMNNSQVQWFRLPLCED  182 (342)
T ss_dssp             ------CSSEEEEEESTTEEEEEESSCCTT
T ss_pred             ------cCCceeeecCCCcEEEEecccCcc
Confidence                  445566678899999999976554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=8.4e-16  Score=151.47  Aligned_cols=144  Identities=13%  Similarity=0.099  Sum_probs=113.8

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC----
Q 006743            7 EHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS----   81 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~----   81 (633)
                      +|+++++.|++|+|||+++++.+..+..+. ...+..++|+|||+.++++++.++.|++||+.+++. +..+..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence            589999999999999999999999887543 345677999999986667888899999999998874 34444332    


Q ss_pred             -CCeEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743           82 -APTAGISFSSDDKIIASVG------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (633)
Q Consensus        82 -~~VtsLafSPdg~~LaSgS------------~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I  148 (633)
                       ..+..++|+|++++++++.            .+..+.+||..+++....+.....+.+++|+|||+++++++.+  +.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cce
Confidence             3456789999999998876            3567889999988888887777778888888888888877543  455


Q ss_pred             EECCC
Q 006743          149 YDIRG  153 (633)
Q Consensus       149 WDlrs  153 (633)
                      ||..+
T Consensus       159 ~d~~~  163 (337)
T d1pbyb_         159 MDPEA  163 (337)
T ss_dssp             EETTT
T ss_pred             eeeec
Confidence            66543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=4.5e-15  Score=144.40  Aligned_cols=195  Identities=13%  Similarity=0.101  Sum_probs=140.9

Q ss_pred             CccCCCCEEE-EEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~La-Sgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      +|+|||++|+ ++..++.|++||+.+++.+..+..+.  .+..++|++++..+++++..++.+.+|+..+.+. ...+. 
T Consensus        38 a~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  113 (301)
T d1l0qa2          38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-  113 (301)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-
T ss_pred             EEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc--cccccccccccccccccccccceeeeccccccee-eeecc-
Confidence            5899999885 55678999999999999999887533  3567999999997788888899999999988763 34443 


Q ss_pred             CCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeeEeeCC------------------------------------
Q 006743           80 HSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITYE------------------------------------  122 (633)
Q Consensus        80 H~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtgk~v~~i~h~------------------------------------  122 (633)
                      +...+.+++|+|+++.++ ++..++.+.+||..+.+.+..+.+.                                    
T Consensus       114 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (301)
T d1l0qa2         114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeee
Confidence            456789999999988765 5556788999998776544433222                                    


Q ss_pred             ------CCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeE
Q 006743          123 ------APFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETA  193 (633)
Q Consensus       123 ------~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~l  193 (633)
                            ..+..++|++++..++++..   ++.|++||+.+.+ .+..+.   +...+.+++|+|+|++|           
T Consensus       194 ~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~~~~~~---~~~~~~~va~spdg~~l-----------  258 (301)
T d1l0qa2         194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIP---VGPDPAGIAVTPDGKKV-----------  258 (301)
T ss_dssp             EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEE---CCSSEEEEEECTTSSEE-----------
T ss_pred             ecccccCCcceeeccccccccccccccceeeeeeeeecCCCe-EEEEEc---CCCCEEEEEEeCCCCEE-----------
Confidence                  22345667777776665543   3578888888762 233333   44668889999875543           


Q ss_pred             EEEeeCCCeEEccCCCCCCCC
Q 006743          194 LLGGAVGDSILMPDPLPSVTT  214 (633)
Q Consensus       194 LlSgs~Dg~IkIWDlr~~~~~  214 (633)
                      +++++.|+.|++||+......
T Consensus       259 ~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         259 YVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEE
T ss_pred             EEEECCCCeEEEEECCCCeEE
Confidence            345567899999998655443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=6.2e-15  Score=145.70  Aligned_cols=99  Identities=12%  Similarity=0.043  Sum_probs=78.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      ||++++++|++++.++.|.|||+.+++.+..++.++...+..++|+|||+.+++++..++.|++||+.+.+.. ..+...
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~-~~~~~~   81 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT-FHANLS   81 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEESC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee-eeeccc
Confidence            6899999999999999999999999999998886666666789999999966778889999999999887643 222211


Q ss_pred             ------CCCeEEEEEcCCCCEEEEEe
Q 006743           81 ------SAPTAGISFSSDDKIIASVG  100 (633)
Q Consensus        81 ------~~~VtsLafSPdg~~LaSgS  100 (633)
                            ...+..++|+|||+++++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEe
Confidence                  12355678888888776654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.63  E-value=1.9e-15  Score=159.11  Aligned_cols=206  Identities=13%  Similarity=0.024  Sum_probs=142.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE--EEeCC--CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAA--ELKDP--NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-   75 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~--~~~~~--~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~-   75 (633)
                      +|+|||++|++++.||.|++||+.+++...  .+...  +...+..++|+|||+.+++++..++.+.+||......... 
T Consensus        68 afSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~  147 (426)
T d1hzua2          68 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV  147 (426)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEe
Confidence            589999999999999999999999887543  33321  2344555677889996677777899999999876442100 


Q ss_pred             -----------------------------------------------------EeccCCCCeEEEEEcCCCCEEEEEeC-
Q 006743           76 -----------------------------------------------------WLKQHSAPTAGISFSSDDKIIASVGL-  101 (633)
Q Consensus        76 -----------------------------------------------------~l~~H~~~VtsLafSPdg~~LaSgS~-  101 (633)
                                                                           ....+...+..+.|+|++++++++.. 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~  227 (426)
T d1hzua2         148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANN  227 (426)
T ss_dssp             ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETT
T ss_pred             eccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeec
Confidence                                                                 01134455678899998888777653 


Q ss_pred             CCeEEEEeCCCCcee------------------------------------------------------eEe-eCCCCeE
Q 006743          102 DKKLYTYDPGSRRPS------------------------------------------------------SCI-TYEAPFS  126 (633)
Q Consensus       102 DGtVrIWDlrtgk~v------------------------------------------------------~~i-~h~~~It  126 (633)
                      +..+.+||..+++.+                                                      ..+ .|...+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~  307 (426)
T d1hzua2         228 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL  307 (426)
T ss_dssp             CSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCC
T ss_pred             ccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCcee
Confidence            445666666443321                                                      111 3456688


Q ss_pred             EEEEecCCCEEEE-------EEcCCeEEEEECCCCCCceEEEe------ecCCCCCeeEEEEccCCCeEEEeccCCCCeE
Q 006743          127 SLAFIDDDWILTA-------GTSNGRVVFYDIRGKPQPLTVLR------ACSSSEAVSSLCWQRAKPVFIDETTCKAETA  193 (633)
Q Consensus       127 sLafSPdG~~Lat-------Gs~DGsV~IWDlrs~~k~v~~l~------~~~H~~~VtsLafsPdg~~Las~s~~sd~~l  193 (633)
                      .++|+||+++|++       +..|++|+|||+++.+.....+.      ...|...|.+++|+|||++++...+.     
T Consensus       308 ~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~-----  382 (426)
T d1hzua2         308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN-----  382 (426)
T ss_dssp             CEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC-----
T ss_pred             EEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec-----
Confidence            8999999999995       45678999999998865544432      12466779999999998876432111     


Q ss_pred             EEEeeCCCeEEccCCCCCCC
Q 006743          194 LLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       194 LlSgs~Dg~IkIWDlr~~~~  213 (633)
                        +.+.++.|+|||.+....
T Consensus       383 --~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         383 --GKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             --CTTSCCEEEEEETTTTEE
T ss_pred             --CCCCCCeEEEEECCCCeE
Confidence              123588899999876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=1.2e-14  Score=154.77  Aligned_cols=173  Identities=14%  Similarity=0.119  Sum_probs=134.5

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEE---eccCCCC
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSW---LKQHSAP   83 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~---l~~H~~~   83 (633)
                      ++++.+.+|.|.|||..+++.+..+..+  ..+..++|+|||+ ++++++.|++|++||+.+.+.. +..   ...|.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            3578889999999999999999999864  3578899999998 7889999999999999876632 222   2345555


Q ss_pred             eEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeEee------------CCCCeEEEEEecCCCEEE-EEEcCCeEEEE
Q 006743           84 TAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILT-AGTSNGRVVFY  149 (633)
Q Consensus        84 VtsLafSPdg~~L-aSgS~DGtVrIWDlrtgk~v~~i~------------h~~~ItsLafSPdG~~La-tGs~DGsV~IW  149 (633)
                      +.+..|+|||++| +++..++.|++||..+++++..+.            +......+.++|+|.+++ +...++.|.+|
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            6666778899976 678889999999999998876542            345677899999998765 55567999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      |....+. ..+.. ..+...+.+++|+|+|++++++
T Consensus       191 d~~~~~~-~~~~~-i~~g~~~~~~~~spdg~~~~va  224 (432)
T d1qksa2         191 DYTDLNN-LKTTE-ISAERFLHDGGLDGSHRYFITA  224 (432)
T ss_dssp             ETTCSSE-EEEEE-EECCSSEEEEEECTTSCEEEEE
T ss_pred             EccCCCc-ceEEE-EcccCccccceECCCCCEEEEe
Confidence            9987632 22222 2466778999999998877665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.58  E-value=3e-13  Score=131.20  Aligned_cols=168  Identities=14%  Similarity=0.095  Sum_probs=133.1

Q ss_pred             EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEE
Q 006743           10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF   89 (633)
Q Consensus        10 aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLaf   89 (633)
                      ++++.|+.|.|||+++++.+..+..  ......++|+|+|+++++++..++.|++||+.+.+. +..+..|. .+..++|
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~   81 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAV   81 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-ccccccc
Confidence            3566889999999999999998874  344678999999996667888899999999998874 45555554 5789999


Q ss_pred             cCCCCEEE-EEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEE-EEcCCeEEEEECCCCCCceEEEeecCCC
Q 006743           90 SSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA-GTSNGRVVFYDIRGKPQPLTVLRACSSS  167 (633)
Q Consensus        90 SPdg~~La-SgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~Lat-Gs~DGsV~IWDlrs~~k~v~~l~~~~H~  167 (633)
                      ++++.+++ ++..++.+++||..+++....+.+...+.+++|+|++..++. +..++.+.+|+..+.. ....+   .+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~  157 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTV---SVG  157 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE---ECC
T ss_pred             ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccc-eeeec---ccC
Confidence            99888655 455777999999999999988888889999999999988765 4557889999998873 33333   355


Q ss_pred             CCeeEEEEccCCCeEEEe
Q 006743          168 EAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       168 ~~VtsLafsPdg~~Las~  185 (633)
                      ..+.+++++|++..++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVA  175 (301)
T ss_dssp             SSEEEEEECTTSSEEEEE
T ss_pred             CCceEEEeeccccceeee
Confidence            668899999976555443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.55  E-value=1.7e-13  Score=143.90  Aligned_cols=175  Identities=10%  Similarity=0.147  Sum_probs=130.2

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee----EEeccCCCC
Q 006743            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV----SWLKQHSAP   83 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v----~~l~~H~~~   83 (633)
                      +++++..||.|+|||+.+++.+..+..+  ..+..++|+|||+ +|++++.|++|++||+.+.+...    ....+|...
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            4567788999999999999999999864  3578899999998 78899999999999998877432    222355566


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEee------------CCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 006743           84 TAGISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILTAGTS-NGRVVFY  149 (633)
Q Consensus        84 VtsLafSPdg~~LaSg-S~DGtVrIWDlrtgk~v~~i~------------h~~~ItsLafSPdG~~LatGs~-DGsV~IW  149 (633)
                      +.+++|+|||++++++ ..++.+++||..++.++..+.            +......+..++++..++.... .+.+.++
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            6777888999987554 588999999999988776542            3344566777777777665554 4667777


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (633)
Q Consensus       150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~  187 (633)
                      +.........  ....+...+..+.|+|++++++....
T Consensus       191 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         191 NYKDIDNLTV--TSIGAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             ECSSSSSCEE--EEEECCSSEEEEEECTTSCEEEEEET
T ss_pred             Eeccccceee--EEeccCCccEeeeECCCCcEEEeeee
Confidence            7665533222  22357788999999998887766533

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=8.8e-12  Score=122.75  Aligned_cols=176  Identities=8%  Similarity=0.012  Sum_probs=125.9

Q ss_pred             EEEEEECCCcEEEEECCCCcee---EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--EeccCCC
Q 006743            8 HLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--WLKQHSA   82 (633)
Q Consensus         8 ~LaSgs~DG~I~IWDl~tgk~v---~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~--~l~~H~~   82 (633)
                      .++++..|+.|++|++.....+   ..+.  +...+..|+|+|||+.+++++..|+.|++|++........  ....+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            3466778999999999765433   3333  4566788999999995556666799999999976543222  2233456


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCc
Q 006743           83 PTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQP  157 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~k~  157 (633)
                      .+..++|+|||++|++++. ++.|.+|+..........   .+...+.++.++|+++++++++. +..|.+|+.......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            6788999999999999885 668999998776554433   46677889999999999887775 567999998775432


Q ss_pred             eEEE---eecCCCCCeeEEEEccCCCeEEEe
Q 006743          158 LTVL---RACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       158 v~~l---~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ....   ...........++|++++.+++..
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            2221   122345567889999987776554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=3.7e-12  Score=135.32  Aligned_cols=153  Identities=14%  Similarity=0.039  Sum_probs=118.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce--eEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAK--AAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~--v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~   76 (633)
                      +|+|||++|++++.||.|.+||+.+++.  +.++..  .+...+..+.|+|||+.+++++..++.|+|||..+.+.. ..
T Consensus        68 ~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~-~~  146 (432)
T d1qksa2          68 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK-KI  146 (432)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE-EE
T ss_pred             EECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccce-ee
Confidence            5999999999999999999999988763  344442  123344445677899977789999999999999988743 33


Q ss_pred             ec-----------cCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceee--EeeCCCCeEEEEEecCCCEEEEEEc
Q 006743           77 LK-----------QHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus        77 l~-----------~H~~~VtsLafSPdg~~L-aSgS~DGtVrIWDlrtgk~v~--~i~h~~~ItsLafSPdG~~LatGs~  142 (633)
                      +.           .+......+.++|++..+ ++...++.|.+||..+.+...  .+.+...+.+++|+|+|+++++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             eccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc
Confidence            32           244567788999988775 556678999999998876543  4467778999999999998887765


Q ss_pred             -CCeEEEEECCCC
Q 006743          143 -NGRVVFYDIRGK  154 (633)
Q Consensus       143 -DGsV~IWDlrs~  154 (633)
                       ++.|.++|..+.
T Consensus       227 ~~~~v~v~d~~~~  239 (432)
T d1qksa2         227 ARNKLVVIDTKEG  239 (432)
T ss_dssp             GGTEEEEEETTTT
T ss_pred             ccceEEEeecccc
Confidence             567999999876

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=1.2e-11  Score=121.23  Aligned_cols=155  Identities=12%  Similarity=0.120  Sum_probs=118.6

Q ss_pred             CccCCCCEEEEEE------------CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006743            1 MYNCKDEHLASIS------------LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (633)
Q Consensus         1 AFSpdG~~LaSgs------------~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~   68 (633)
                      +|+|++++++++.            .++.+.+||..+++....+..  ...+..++|++++. ++++++.  .+.+||..
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~-~l~~~~~--~~~~~d~~  162 (337)
T d1pbyb_          88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGS-KLYGLGR--DLHVMDPE  162 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSS-CEEEESS--SEEEEETT
T ss_pred             EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc--cCCceEEEEcCCCC-EEEEEcC--Ccceeeee
Confidence            4789999998775            457899999999998888874  34466789999998 5666654  35667764


Q ss_pred             CCCce-----------------------------------------------------------------eEEeccCCCC
Q 006743           69 GRSPK-----------------------------------------------------------------VSWLKQHSAP   83 (633)
Q Consensus        69 t~~~~-----------------------------------------------------------------v~~l~~H~~~   83 (633)
                      +.+..                                                                 ......+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (337)
T d1pbyb_         163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF  242 (337)
T ss_dssp             TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             cCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcc
Confidence            33210                                                                 1112234556


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (633)
Q Consensus        84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~  163 (633)
                      +.++.+++++.+++.+  ++.|++||+++++.+..+.+...+.+++|+|||++|++++.|+.|+|||.++. +.+..+..
T Consensus       243 ~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~-~~v~~i~~  319 (337)
T d1pbyb_         243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDL  319 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred             eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEEEC
Confidence            6777788888887665  57899999999999999988889999999999999999999999999999987 44555553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=8.4e-12  Score=122.90  Aligned_cols=198  Identities=9%  Similarity=0.057  Sum_probs=128.0

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEE
Q 006743            1 MYNCKDEHLASIS-LSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~   76 (633)
                      +|+|||++|++++ .|+.|++|++........+..  .....+..++|+|+|+.+++++..++.|.+|+....... ...
T Consensus        43 a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~  122 (333)
T d1ri6a_          43 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD  122 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc
Confidence            5899999997665 489999999976543332221  123334569999999954444446889999998765522 233


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeeE-------------------------------------
Q 006743           77 LKQHSAPTAGISFSSDDKIIASVGLD-KKLYTYDPGSRRPSSC-------------------------------------  118 (633)
Q Consensus        77 l~~H~~~VtsLafSPdg~~LaSgS~D-GtVrIWDlrtgk~v~~-------------------------------------  118 (633)
                      ...+...+.++.++|+++++++++.+ ..|.+|+.........                                     
T Consensus       123 ~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~  202 (333)
T d1ri6a_         123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD  202 (333)
T ss_dssp             EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceE
Confidence            44566778889999999887777644 4677777643211000                                     


Q ss_pred             ----------------e-------eCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEE
Q 006743          119 ----------------I-------TYEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLC  174 (633)
Q Consensus       119 ----------------i-------~h~~~ItsLafSPdG~~LatG-s~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLa  174 (633)
                                      .       ........++++++++++++. ..++.+.+|++..............+...+.+++
T Consensus       203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a  282 (333)
T d1ri6a_         203 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFN  282 (333)
T ss_dssp             EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEE
T ss_pred             EEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEE
Confidence                            0       001223456778888766654 4567888888876554444444334556788899


Q ss_pred             EccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       175 fsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      |+|+|++|+.+           +..++.|++|++.
T Consensus       283 ~spDGk~l~va-----------~~~~~~v~v~~id  306 (333)
T d1ri6a_         283 VDHSGKYLIAA-----------GQKSHHISVYEIV  306 (333)
T ss_dssp             ECTTSSEEEEE-----------CTTTCEEEEEEEE
T ss_pred             EeCCCCEEEEE-----------ECCCCeEEEEEEE
Confidence            99987665433           3457888998664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.31  E-value=1.6e-10  Score=116.28  Aligned_cols=198  Identities=10%  Similarity=-0.002  Sum_probs=117.3

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEEeCCCCCcE------EEEEEccCCCeEEEEE-eCCCeEE
Q 006743            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDPNEQVL------RVLDYSRNSRHLLVTA-GDDGTLH   63 (633)
Q Consensus         1 AFSpdG~~LaSgs----------~DG~I~IWDl~tgk~v~~~~~~~~~~V------ssLafSpdg~~lLaSG-s~DGtI~   63 (633)
                      +|+|||++|+++.          .++.|.+||..+++.+..+..+.....      ..+.|+++++.+++.. ..++.+.
T Consensus        72 a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~  151 (373)
T d2madh_          72 VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVG  151 (373)
T ss_pred             EEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceE
Confidence            5899999999875          357899999999998877654332211      2356666665332222 2345566


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeE------------------------
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKI-IASVGLDKKLYTYDPGSRRPSSC------------------------  118 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~-LaSgS~DGtVrIWDlrtgk~v~~------------------------  118 (633)
                      +|+....+.     ..+...+.++.++|+++. +++.+.|+.+.+||...++....                        
T Consensus       152 ~~~~~~~~~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (373)
T d2madh_         152 LVVQGGSSD-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR  226 (373)
T ss_pred             EeeccCCeE-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce
Confidence            666654431     122233455666665543 34555666666666543322111                        


Q ss_pred             -----------------------ee-------------CCCCeEEEEEecCCCEEE----------EEEcCCeEEEEECC
Q 006743          119 -----------------------IT-------------YEAPFSSLAFIDDDWILT----------AGTSNGRVVFYDIR  152 (633)
Q Consensus       119 -----------------------i~-------------h~~~ItsLafSPdG~~La----------tGs~DGsV~IWDlr  152 (633)
                                             ..             .......+++++++..++          ....++.|.+||..
T Consensus       227 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  306 (373)
T d2madh_         227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL  306 (373)
T ss_pred             EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC
Confidence                                   00             011122345556555443          44556789999998


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      +++ .+..+   .+...+.+++|+|||+.+          ++++++.|+.|++||+.......+.
T Consensus       307 t~~-~~~~~---~~~~~~~~~a~spDG~~~----------l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         307 VGQ-TSSQI---SLGHDVDAISVAQDGGPD----------LYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCc-EEEEe---cCCCCeeEEEECCCCCEE----------EEEEeCCCCeEEEEECCCCCEEEEE
Confidence            873 33333   467789999999976543          3456677999999999766654443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=2.7e-11  Score=120.78  Aligned_cols=199  Identities=10%  Similarity=0.049  Sum_probs=133.8

Q ss_pred             CccCCCCEEEEE----------ECCCcEEEEECCCCceeEEEeCCCC------CcEEEEEEccCCCeEEEEE--eCCCeE
Q 006743            1 MYNCKDEHLASI----------SLSGDLILHNLASGAKAAELKDPNE------QVLRVLDYSRNSRHLLVTA--GDDGTL   62 (633)
Q Consensus         1 AFSpdG~~LaSg----------s~DG~I~IWDl~tgk~v~~~~~~~~------~~VssLafSpdg~~lLaSG--s~DGtI   62 (633)
                      +|+|||++|+++          ..|+.|++||+.+++.+..+..+..      .....++|+++++. ++.+  ..+..+
T Consensus        53 a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-~~v~~~~~~~~~  131 (355)
T d2bbkh_          53 VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT-LLFYQFSPAPAV  131 (355)
T ss_dssp             EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE-EEEEECSSSCEE
T ss_pred             EEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCe-eEEecCCCCcee
Confidence            589999988764          3478999999999998877653221      12234789999984 4444  346789


Q ss_pred             EEEECCCCCceeEEec---------------------------------------------cCCCCeEEEEEcCCCCEEE
Q 006743           63 HLWDTTGRSPKVSWLK---------------------------------------------QHSAPTAGISFSSDDKIIA   97 (633)
Q Consensus        63 ~IWDl~t~~~~v~~l~---------------------------------------------~H~~~VtsLafSPdg~~La   97 (633)
                      .+||..+.+.. ..+.                                             .+...+....+.+++..++
T Consensus       132 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (355)
T d2bbkh_         132 GVVDLEGKAFK-RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  210 (355)
T ss_dssp             EEEETTTTEEE-EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             eeeecCCCcEe-eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEE
Confidence            99998765522 1110                                             1111233445666777888


Q ss_pred             EEeCCCeEEEEeCCCCceeeEee-------------CCCCeEEEEEecCCCEEEEEEcC----------CeEEEEECCCC
Q 006743           98 SVGLDKKLYTYDPGSRRPSSCIT-------------YEAPFSSLAFIDDDWILTAGTSN----------GRVVFYDIRGK  154 (633)
Q Consensus        98 SgS~DGtVrIWDlrtgk~v~~i~-------------h~~~ItsLafSPdG~~LatGs~D----------GsV~IWDlrs~  154 (633)
                      .++.++.+++||+..+.......             .......+++++++..++....+          ..|.+||..+.
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~  290 (355)
T d2bbkh_         211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  290 (355)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence            88999999999998775432210             12234568899999988876554          36999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (633)
Q Consensus       155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s  215 (633)
                      + .+..+.   +...+.+++|+|+|+.+          +++++..|+.|.+||+.......
T Consensus       291 ~-~~~~~~---~~~~~~~~a~spDG~~~----------l~v~~~~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         291 E-RLAKFE---MGHEIDSINVSQDEKPL----------LYALSTGDKTLYIHDAESGEELR  337 (355)
T ss_dssp             C-EEEEEE---EEEEECEEEECCSSSCE----------EEEEETTTTEEEEEETTTCCEEE
T ss_pred             c-EEEEec---CCCCEEEEEEcCCCCeE----------EEEEECCCCEEEEEECCCCCEEE
Confidence            3 334343   44668999999976532          34455679999999997654433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.27  E-value=2e-11  Score=119.90  Aligned_cols=110  Identities=10%  Similarity=0.069  Sum_probs=88.1

Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeeEee
Q 006743           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCIT  120 (633)
Q Consensus        43 LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtgk~v~~i~  120 (633)
                      ++|+++++ +|++++.|++|+|||+.+.+. +..+. .|...+.+++|+|||++++ ++..++.|++||+.+++.+..+.
T Consensus         2 ~a~~~~~~-~l~~~~~~~~v~v~D~~t~~~-~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHE-YMIVTNYPNNLHVVDVASDTV-YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCE-EEEEEETTTEEEEEETTTTEE-EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCc-EEEEEcCCCEEEEEECCCCCE-EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            46778887 899999999999999998874 45554 5667789999999999874 55678999999999998887664


Q ss_pred             CC-------CCeEEEEEecCCCEEEEEE------------cCCeEEEEECCCC
Q 006743          121 YE-------APFSSLAFIDDDWILTAGT------------SNGRVVFYDIRGK  154 (633)
Q Consensus       121 h~-------~~ItsLafSPdG~~LatGs------------~DGsV~IWDlrs~  154 (633)
                      ..       ..+..++|+|||+++++++            .++.+.+||..++
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence            22       2356799999999998775            3677888888765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.09  E-value=5.3e-09  Score=104.99  Aligned_cols=171  Identities=11%  Similarity=0.039  Sum_probs=117.6

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCC-----CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-e
Q 006743            2 YNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPN-----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-V   74 (633)
Q Consensus         2 FSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~~~~~~-----~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v   74 (633)
                      |+++|+.+ ++.+.||.+.+|+...++.........     ......+.+.+++  .++..+.++.+++|+....... .
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~  249 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEE
Confidence            67888754 678899999999998877665543211     1122234445444  4667778999999998766522 1


Q ss_pred             EEeccC----------CCCeEEEEEcCCCCEE----------EEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCC
Q 006743           75 SWLKQH----------SAPTAGISFSSDDKII----------ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD  134 (633)
Q Consensus        75 ~~l~~H----------~~~VtsLafSPdg~~L----------aSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG  134 (633)
                      .....+          ......+++++++..+          +....++.|.+||..+++.+..+.+...+.+++|+|||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG  329 (373)
T d2madh_         250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG  329 (373)
T ss_pred             EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCC
Confidence            111111          1223445556555544          34556678999999999999999888999999999999


Q ss_pred             CE--EEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          135 WI--LTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       135 ~~--LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      +.  +++++.|+.|++||+.++ +.+..+.  .+......|++.+
T Consensus       330 ~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~--~~g~~P~~l~~~~  371 (373)
T d2madh_         330 GPDLYALSAGTEVLHIYDAGAG-DQDQSTV--ELGSGPQVLSVMN  371 (373)
T ss_pred             CEEEEEEeCCCCeEEEEECCCC-CEEEEEC--CCCCCCcEEEEec
Confidence            84  467889999999999998 4455555  4566677776654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.08  E-value=8.8e-10  Score=112.25  Aligned_cols=202  Identities=12%  Similarity=-0.002  Sum_probs=121.4

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEEeCCCCC------cEEEEEEccCCCeEEEEEeCCCeEEE
Q 006743            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDPNEQ------VLRVLDYSRNSRHLLVTAGDDGTLHL   64 (633)
Q Consensus         1 AFSpdG~~LaSgs----------~DG~I~IWDl~tgk~v~~~~~~~~~------~VssLafSpdg~~lLaSGs~DGtI~I   64 (633)
                      +|+|||++|++.+          .|+.|.+||..+++.+..+..+...      ....++|+|||++++++...++.|.+
T Consensus        71 a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~  150 (368)
T d1mdah_          71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG  150 (368)
T ss_dssp             EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEE
T ss_pred             eECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEE
Confidence            4899999988764          3677999999999988877643221      12248999999965555567899999


Q ss_pred             EECCCCCceeEEeccCCCC-------eEEEEEcCCCCEEEEEe------------------------------------C
Q 006743           65 WDTTGRSPKVSWLKQHSAP-------TAGISFSSDDKIIASVG------------------------------------L  101 (633)
Q Consensus        65 WDl~t~~~~v~~l~~H~~~-------VtsLafSPdg~~LaSgS------------------------------------~  101 (633)
                      ||+.+.+. ...+..+...       ...+.+++|+..++...                                    .
T Consensus       151 ~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         151 LSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             EEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EECCCCcE-eEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            99988763 2322222111       12223333333222221                                    1


Q ss_pred             CCeEEEEeCCCCceeeEee-------------CCCCeEEEEEecCCCEEEEEEcC---------CeEEEEECCCCCCceE
Q 006743          102 DKKLYTYDPGSRRPSSCIT-------------YEAPFSSLAFIDDDWILTAGTSN---------GRVVFYDIRGKPQPLT  159 (633)
Q Consensus       102 DGtVrIWDlrtgk~v~~i~-------------h~~~ItsLafSPdG~~LatGs~D---------GsV~IWDlrs~~k~v~  159 (633)
                      .+.++++|...+.......             .......+++++++..+++...+         ..|.+||..+.+ .+.
T Consensus       230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~-~~~  308 (368)
T d1mdah_         230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSG  308 (368)
T ss_dssp             SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEE
T ss_pred             CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc-EeE
Confidence            2233444443333222110             01123357888888877665432         358999999883 333


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~  217 (633)
                      .+   .+...+.+++|+|||+.+          +++++..|+.|++||+.......+.
T Consensus       309 ~~---~~~~~~~~~a~spDG~~~----------ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         309 PI---SNGHDSDAIIAAQDGASD----------NYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             CC---EEEEEECEEEECCSSSCE----------EEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             Ee---cCCCceeEEEECCCCCEE----------EEEEeCCCCeEEEEECCCCCEEEEE
Confidence            33   345678899999975432          3455567899999998765554443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.98  E-value=2.7e-08  Score=98.54  Aligned_cols=186  Identities=6%  Similarity=-0.057  Sum_probs=119.6

Q ss_pred             CccCCCCEEEEEE-----CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEE---------EeCCCeEEEEE
Q 006743            1 MYNCKDEHLASIS-----LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVT---------AGDDGTLHLWD   66 (633)
Q Consensus         1 AFSpdG~~LaSgs-----~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaS---------Gs~DGtI~IWD   66 (633)
                      |.+|||+++++..     .++.|.+||..+++.+..+..+..   ..++|+|||+.++++         +..|+.|++||
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~---~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC---CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            4579999988764     355799999999999988875322   258999999955444         34578999999


Q ss_pred             CCCCCceeEEeccCC-------CCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEeeCCCC--------eEEEE
Q 006743           67 TTGRSPKVSWLKQHS-------APTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAP--------FSSLA  129 (633)
Q Consensus        67 l~t~~~~v~~l~~H~-------~~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i~h~~~--------ItsLa  129 (633)
                      ..+.+.. ..+..+.       .....++|++++++++.+.  .+..+++||..+++.+..+.....        ...+.
T Consensus        85 ~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          85 PVTLLPT-ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             TTTCCEE-EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCCCEE-EEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            9988743 3333222       2345689999999888775  456899999999988877653322        23345


Q ss_pred             EecCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          130 FIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       130 fSPdG~~LatGs-~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +++|+..++... .++.+.+++.....        ..+...+....+.++            ...++..+.++.+++|++
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~  223 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFH--------PEDEFLINHPAYSQK------------AGRLVWPTYTGKIHQIDL  223 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCS--------CTTSCBCSCCEEETT------------TTEEEEEBTTSEEEEEEC
T ss_pred             EcCCCCEEEEEecCCCeEEEEeccccc--------ceecceeeeccccCC------------CCeEEEecCCCeEEEEec
Confidence            555555544332 23344444443321        123334445555553            333444466788888877


Q ss_pred             CC
Q 006743          209 LP  210 (633)
Q Consensus       209 r~  210 (633)
                      ..
T Consensus       224 ~~  225 (355)
T d2bbkh_         224 SS  225 (355)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.90  E-value=4.4e-09  Score=110.60  Aligned_cols=143  Identities=13%  Similarity=0.146  Sum_probs=108.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC----CCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP----NEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTT   68 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~----~~~~VssLafSpdg~~lLaSGs~---------DGtI~IWDl~   68 (633)
                      |.++++++.  ..|+.|.+||+.+++....+..+    +...|.++.|+||++ +|+.++.         ++.+.|||+.
T Consensus        24 W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~  100 (470)
T d2bgra1          24 WISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLN  100 (470)
T ss_dssp             ECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             eCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-EEEEEECCcceeeeccCceEEEEECC
Confidence            677887765  35788999999999887655542    235678899999999 5555532         5678999999


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-------------------CCCCeEEEE
Q 006743           69 GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-------------------YEAPFSSLA  129 (633)
Q Consensus        69 t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-------------------h~~~ItsLa  129 (633)
                      +++  ...+..|...+..+.|+|||++||... ++.+++|+..+++..+...                   ..+....+.
T Consensus       101 ~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1         101 KRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCc--ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            887  556888999999999999999999965 6789999999887665432                   112345688


Q ss_pred             EecCCCEEEEEEcCCe-EEEEE
Q 006743          130 FIDDDWILTAGTSNGR-VVFYD  150 (633)
Q Consensus       130 fSPdG~~LatGs~DGs-V~IWD  150 (633)
                      |+|||++|+....|.. |..|+
T Consensus       178 wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         178 WSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEE
T ss_pred             ECCCCCccceeEecCCcCceEE
Confidence            9999999998876533 44443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=4.3e-07  Score=86.99  Aligned_cols=178  Identities=15%  Similarity=0.166  Sum_probs=117.8

Q ss_pred             CccCCCCEEEEEECCC---cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            1 MYNCKDEHLASISLSG---DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG---~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      +|||||++||......   .+.+.+...+.......  +........|+|++..+++....++...++............
T Consensus        45 ~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~  122 (269)
T d2hqsa1          45 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV  122 (269)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC
T ss_pred             EECCCCCEEEEEEeeccCcceeeeecccCceeEEee--eecccccceecCCCCeeeEeeecCCccceeecccccccceee
Confidence            5999999999765443   47777776665544433  455667789999999666666666655555443333224444


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEe-CCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC-e--EEEEEC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVG-LDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG-R--VVFYDI  151 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS-~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG-s--V~IWDl  151 (633)
                      ..+........+++++..++..+ .++  .|.++++..+................|+|+++.++....++ .  |.++|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~  202 (269)
T d2hqsa1         123 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  202 (269)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             eeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeec
Confidence            55556666677888766655544 444  57777777766655555667788889999999988766543 3  445555


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ....  ....   .+........|+|||++|+..
T Consensus       203 ~~~~--~~~~---~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         203 ATGG--VQVL---SSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             TTCC--EEEC---CCSSSCEEEEECTTSSEEEEE
T ss_pred             cccc--ceEe---ecCccccceEECCCCCEEEEE
Confidence            5442  2222   356677889999999988765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.80  E-value=1.2e-08  Score=107.23  Aligned_cols=139  Identities=12%  Similarity=0.075  Sum_probs=104.8

Q ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE----EeccCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEE
Q 006743           42 VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS----WLKQHSAPTAGISFSSDDKIIASVGL---------DKKLYTY  108 (633)
Q Consensus        42 sLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~----~l~~H~~~VtsLafSPdg~~LaSgS~---------DGtVrIW  108 (633)
                      .+.|.++++ ++.  ..|+.|.+||+.+++....    .+..|...|.++.|+||+++|+.++.         ++.+++|
T Consensus        21 ~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHE-YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSE-EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            378999886 554  4578899999998874321    23345578999999999999998854         5678999


Q ss_pred             eCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec----------------CCCCCeeE
Q 006743          109 DPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----------------SSSEAVSS  172 (633)
Q Consensus       109 Dlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~----------------~H~~~Vts  172 (633)
                      |+.+++......+...+..+.|+|||++||.. .++.+++|+..++.. .+.....                ...+....
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~-~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCce-eeeeeccCCCcccccccceeeeeeecCCccc
Confidence            99999877666788999999999999999985 567899999987742 2221100                02234566


Q ss_pred             EEEccCCCeEEEe
Q 006743          173 LCWQRAKPVFIDE  185 (633)
Q Consensus       173 LafsPdg~~Las~  185 (633)
                      +.|+|||++|+..
T Consensus       176 ~~wSPDGk~ia~~  188 (470)
T d2bgra1         176 LWWSPNGTFLAYA  188 (470)
T ss_dssp             EEECTTSSEEEEE
T ss_pred             cEECCCCCcccee
Confidence            8899999888775

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.79  E-value=3.1e-08  Score=105.86  Aligned_cols=200  Identities=11%  Similarity=-0.033  Sum_probs=128.8

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeE------------------
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL------------------   62 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI------------------   62 (633)
                      ++|||++|++.. .++.|.++|+.+++....+...+......++|+|+++..++++..+..+                  
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            468999997765 6789999999999988877766677889999999988645554433333                  


Q ss_pred             EEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC----------------------------------------
Q 006743           63 HLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD----------------------------------------  102 (633)
Q Consensus        63 ~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D----------------------------------------  102 (633)
                      ..+|..+.+... .+.. ......++|+|+|+++++.+.+                                        
T Consensus       159 ~~iD~~t~~v~~-qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~  236 (441)
T d1qnia2         159 TAIDAETMDVAW-QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD  236 (441)
T ss_dssp             EEEETTTCSEEE-EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EeecCccceeeE-EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence            457777766332 2222 2457889999999999887654                                        


Q ss_pred             -CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEE-EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC
Q 006743          103 -KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA-GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP  180 (633)
Q Consensus       103 -GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~Lat-Gs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~  180 (633)
                       +.+.+++....+.+..+........+.++|||+++++ +..+++|.|||+.+..+.   +.  ++.....++...++..
T Consensus       237 ~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~---~~--~~~~~~~~~~~~~~~g  311 (441)
T d1qnia2         237 SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL---FE--DKIELRDTIVAEPELG  311 (441)
T ss_dssp             CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH---TT--TSSCGGGGEEECCBCC
T ss_pred             CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH---hh--ccCCcceEEEeecccc
Confidence             2334444444455566655556778999999998765 567899999998753211   00  1112222222222211


Q ss_pred             e-EEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          181 V-FIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       181 ~-Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      . -+-.....++..+.+...|..|..|++
T Consensus       312 lgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         312 LGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             cCcccceecCCceEEEcccccceEEEecc
Confidence            1 111112234556666677899999987

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.78  E-value=1.1e-07  Score=101.53  Aligned_cols=187  Identities=8%  Similarity=-0.038  Sum_probs=129.2

Q ss_pred             EEEEECCCcEEEEECCCCceeEEEeCC-----------------------------CCCcEEEEEEccCCCeEEEEEeCC
Q 006743            9 LASISLSGDLILHNLASGAKAAELKDP-----------------------------NEQVLRVLDYSRNSRHLLVTAGDD   59 (633)
Q Consensus         9 LaSgs~DG~I~IWDl~tgk~v~~~~~~-----------------------------~~~~VssLafSpdg~~lLaSGs~D   59 (633)
                      +++++.+|.|.||++.+++.++.+...                             |........+.|||+.++++...+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            567788999999999999888776321                             112234445578998666677789


Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC--EEEEEeCCC-----------------eEEEEeCCCCceeeEee
Q 006743           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK--IIASVGLDK-----------------KLYTYDPGSRRPSSCIT  120 (633)
Q Consensus        60 GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~--~LaSgS~DG-----------------tVrIWDlrtgk~v~~i~  120 (633)
                      ..|.++|+.+.+.....-..+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            99999999998753333345678899999999888  455444432                 24568998888887777


Q ss_pred             CCCCeEEEEEecCCCEEEEEEcCC-----------------------------------------eEEEEECCCCCCceE
Q 006743          121 YEAPFSSLAFIDDDWILTAGTSNG-----------------------------------------RVVFYDIRGKPQPLT  159 (633)
Q Consensus       121 h~~~ItsLafSPdG~~LatGs~DG-----------------------------------------sV~IWDlrs~~k~v~  159 (633)
                      ..+....++++|+|+++++.+.+.                                         .+.|++.... ..+.
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~-~v~~  252 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES-EFTR  252 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC-SSEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC-ceEE
Confidence            677889999999999999887542                                         2333333222 2333


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~  210 (633)
                      .+.  . ......+.++|||++++           +++..+++|.+||+..
T Consensus       253 ~IP--v-gksPhGv~vSPDGkyl~-----------~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         253 YIP--V-PKNPHGLNTSPDGKYFI-----------ANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EEC--C-BSSCCCEEECTTSCEEE-----------EECTTSSBEEEEEGGG
T ss_pred             EEe--C-CCCccCceECCCCCEEE-----------EeCCcCCcEEEEEeeh
Confidence            333  2 23356788888766654           3456689999999864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.63  E-value=3.6e-07  Score=92.42  Aligned_cols=178  Identities=4%  Similarity=-0.048  Sum_probs=114.4

Q ss_pred             ccCCCCEEEE---EECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEE---------eCCCeEEEEEC
Q 006743            2 YNCKDEHLAS---ISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA---------GDDGTLHLWDT   67 (633)
Q Consensus         2 FSpdG~~LaS---gs~D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSG---------s~DGtI~IWDl   67 (633)
                      ..++++....   ...+  ..|.+||..+++.+..+..+...   .++|+|+++.+.++.         ..|+.|.+||.
T Consensus        27 ~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~---~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             cCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC---cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence            3567775322   2333  45778899999998888764432   478999998444332         34788999999


Q ss_pred             CCCCceeEEeccCC-------CCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEE
Q 006743           68 TGRSPKVSWLKQHS-------APTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        68 ~t~~~~v~~l~~H~-------~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~Lat  139 (633)
                      .+.+. +..+..+.       .....++|+|||++|+++. .++.|.+||+.+++.+..+.......  .+......++.
T Consensus       104 ~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~  180 (368)
T d1mdah_         104 VTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYL  180 (368)
T ss_dssp             TTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CEEEETTEEEC
T ss_pred             CCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--EccCCCceEEE
Confidence            98874 33333222       2235689999999998876 57899999999999888775332221  11123456666


Q ss_pred             EEcCCeEEEEECCCCCCceEEEe---ecCCCCCeeEEEEccCCCeEEEe
Q 006743          140 GTSNGRVVFYDIRGKPQPLTVLR---ACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v~~l~---~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      .+.||.+.+|+............   ...+...+..+.+.+++..+...
T Consensus       181 ~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            77788888888776543322211   11344556677777776665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.52  E-value=4.1e-06  Score=83.16  Aligned_cols=179  Identities=10%  Similarity=0.094  Sum_probs=120.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--   78 (633)
                      |+.+||+++++...+++|+.|+.. ++......  ....+.+++|.++|+ ++++...++.+.+|+..........+.  
T Consensus        34 Av~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~--~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT--VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL  109 (302)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-CCEEEEEE--CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEc--CCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccceeecccc
Confidence            468999999988889999999854 44333333  346678899999998 888888888898888755443333332  


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-----------CCCCeEEEEEecCCCEEEEEEcCCeEE
Q 006743           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----------YEAPFSSLAFIDDDWILTAGTSNGRVV  147 (633)
Q Consensus        79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-----------h~~~ItsLafSPdG~~LatGs~DGsV~  147 (633)
                      ......+.+++.++++++++-+.++.+..+|...+.......           .......+.++. +..+++....+.|+
T Consensus       110 ~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         110 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLL  188 (302)
T ss_dssp             TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEE
T ss_pred             CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEE
Confidence            345668999999999999998999999999998765433221           122355666653 33455666788999


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      .++........ .............++|+++|.+.++.
T Consensus       189 ~~~~~~~~~~~-~~~~~~~~~~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         189 RIPVDSTDKPG-EPEIFVEQTNIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             EEEBCTTSCBC-CCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred             ecccccccccc-ccccccCCCCCcceEECCCCCEEEEE
Confidence            99987643211 11111223446678888876654443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.45  E-value=7.7e-06  Score=79.42  Aligned_cols=177  Identities=8%  Similarity=0.031  Sum_probs=116.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      +++++|+.+++....+.|++++-.+...+....  .......|++.+++. ++++-..+..+.+++........ .....
T Consensus        63 av~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~--~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~-~~~~~  138 (260)
T d1rwia_          63 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD--GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTV-LPFTG  138 (260)
T ss_dssp             EECTTCCEEEEETTTEEEEECTTCSCCEECCCC--SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEE-CCCCS
T ss_pred             EEcCCCCEEEeeeeeceeeeeeeccceeeeeee--eeeecccccccccce-eEeeccccccccccccccceeee-eeecc
Confidence            356777766665555556555544443332222  234567899999887 66666667778888876655222 12222


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~  159 (633)
                      .....++++.++++++++...++.|..+|.......... ........|+++++|+++++....+.|..++......  .
T Consensus       139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~--~  216 (260)
T d1rwia_         139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--T  216 (260)
T ss_dssp             CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC--E
T ss_pred             cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE--E
Confidence            345688999999998888888899999998765443332 3456678999999999888888889999998765421  2


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEE
Q 006743          160 VLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       160 ~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                      .+. ...-.....|+++++|..+++
T Consensus       217 ~~~-~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         217 VLP-FTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             ECC-CCSCCCEEEEEECTTCCEEEE
T ss_pred             EEc-cCCCCCeEEEEEeCCCCEEEE
Confidence            221 123345788999886554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.41  E-value=2.5e-05  Score=79.82  Aligned_cols=161  Identities=5%  Similarity=-0.075  Sum_probs=102.0

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee--EE--eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC
Q 006743           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--SW--LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGS  112 (633)
Q Consensus        38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v--~~--l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrt  112 (633)
                      ..+.++.|+|+|+.++++......|.+|+........  ..  ........+.++|+|+++++++.. .+++|.+||+..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            3467899999999555555556789999875443221  11  123346789999999999886655 578999999876


Q ss_pred             CceeeEe-----e---------------CCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCCCCceE---EEee
Q 006743          113 RRPSSCI-----T---------------YEAPFSSLAFIDDDWILTAGTS------NGRVVFYDIRGKPQPLT---VLRA  163 (633)
Q Consensus       113 gk~v~~i-----~---------------h~~~ItsLafSPdG~~LatGs~------DGsV~IWDlrs~~k~v~---~l~~  163 (633)
                      ++.....     .               .......+.++|||++|+++..      .+.|..|++........   ....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            5432111     0               1123567899999999988753      23477788765432221   1222


Q ss_pred             cCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743          164 CSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (633)
Q Consensus       164 ~~H~~~VtsLafsP-dg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr  209 (633)
                      ........+++++| +|++|+.           ++..++.|.+|++.
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~v-----------a~~~s~~v~v~~~~  340 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAI-----------TDDQEGWLEIYRWK  340 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEE-----------ECSSSCEEEEEEEE
T ss_pred             EcCCCCccEEEecCCCCCEEEE-----------EeCCCCeEEEEEEe
Confidence            23445667788887 5555544           34456777777653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.33  E-value=2.3e-05  Score=78.76  Aligned_cols=190  Identities=16%  Similarity=0.181  Sum_probs=119.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCC---CcEEEEEEccCCCeEEEEEeC---------------CCeE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNE---QVLRVLDYSRNSRHLLVTAGD---------------DGTL   62 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~---~~VssLafSpdg~~lLaSGs~---------------DGtI   62 (633)
                      +|.++|+.|+++...+.|..++...............   ...+.+++.++|+ +.++-..               +|.|
T Consensus        77 ~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v  155 (314)
T d1pjxa_          77 QCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             EECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceE
Confidence            3678898888888777888888754432211111111   1246789999997 5555321               2345


Q ss_pred             EEEECCCCCceeEEeccCCCCeEEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCceee---Ee-e----CCCCeEEEE
Q 006743           63 HLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-----IIASVGLDKKLYTYDPGSRRPSS---CI-T----YEAPFSSLA  129 (633)
Q Consensus        63 ~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~-----~LaSgS~DGtVrIWDlrtgk~v~---~i-~----h~~~ItsLa  129 (633)
                      +.++.....   ..+...-..-+.++|+++++     ++++-+..+.|+.||+.....+.   .+ .    .......++
T Consensus       156 ~~~~~dg~~---~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         156 YCFTTDGQM---IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEECTTSCE---EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             EEEeecCce---eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            555443322   22223334457899998664     44555678899999876432221   11 1    223467899


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       130 fSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +..+|++.++....+.|++||.+... ....+.  .....+++++|.|+++           .++++.+..+.|...|+
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~-~~~~i~--~p~~~~t~~afg~d~~-----------~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIR--CPFEKPSNLHFKPQTK-----------TIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBS-CSEEEE--CSSSCEEEEEECTTSS-----------EEEEEETTTTEEEEEEC
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCE-EEEEEE--CCCCCEEEEEEeCCCC-----------EEEEEECCCCcEEEEEC
Confidence            99999988888889999999988763 344444  3446789999988643           34555566777766665

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.33  E-value=0.0001  Score=72.00  Aligned_cols=179  Identities=12%  Similarity=0.100  Sum_probs=123.3

Q ss_pred             CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE--eccCCCCeEEEEEcCC
Q 006743           15 SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW--LKQHSAPTAGISFSSD   92 (633)
Q Consensus        15 DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~--l~~H~~~VtsLafSPd   92 (633)
                      ++.|.+++. +++....+..........+++.+++. ++++....+.+.+++.....  +..  ...+......+++.++
T Consensus        92 ~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~--~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          92 THQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV--LHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             GCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE--EEEEECTTTCSSEEEEEECSS
T ss_pred             ccccccccc-cccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce--eecccccccccccceeeeccc
Confidence            345556653 56666666544455567788888887 66666777888888876543  333  2455677889999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCceEEEeecCCCC
Q 006743           93 DKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRACSSSE  168 (633)
Q Consensus        93 g~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~k~v~~l~~~~H~~  168 (633)
                      ++.+++....+.|++||.. ++.+..+.   .......|+++++|+++++-.. ++.|.+|+...  +.+..+.......
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G--~~~~~~~~~~~~~  244 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--QLISALESKVKHA  244 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS--CEEEEEEESSCCS
T ss_pred             eeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC--CEEEEEeCCCCCC
Confidence            9998888889999999975 56666664   3445789999999997777544 45799998653  3344444334445


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~  213 (633)
                      ....|++.++|            .++++ ..++.|++|......|
T Consensus       245 ~p~~vav~~dG------------~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         245 QCFDVALMDDG------------SVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEEEETTT------------EEEEE-ETTTEEEEEECSCCCC
T ss_pred             CEeEEEEeCCC------------cEEEE-eCCCeEEEEEeeeecC
Confidence            67888888753            44443 3578899998765544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.31  E-value=2.3e-05  Score=80.11  Aligned_cols=154  Identities=8%  Similarity=0.024  Sum_probs=102.2

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCCC-cee--EEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-
Q 006743            1 MYNCKDEHLASISL-SGDLILHNLASG-AKA--AELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~-DG~I~IWDl~tg-k~v--~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v-   74 (633)
                      +|+|||+++++++. ...|.+|+.... +..  ..+.. ......+.++|+|+++.++++.-.+++|.+|++....... 
T Consensus       151 ~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~  230 (365)
T d1jofa_         151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEE
Confidence            48999999988864 457888876543 222  22222 2345677899999999666777789999999997654221 


Q ss_pred             EEec-----------------cCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceee-E--e----eCCCC
Q 006743           75 SWLK-----------------QHSAPTAGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSS-C--I----TYEAP  124 (633)
Q Consensus        75 ~~l~-----------------~H~~~VtsLafSPdg~~LaSgS~------DGtVrIWDlrtgk~v~-~--i----~h~~~  124 (633)
                      ....                 .+......+.++|+|++|+++..      ...|..|++.....+. .  +    .....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~  310 (365)
T d1jofa_         231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred             EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC
Confidence            1100                 11223567899999999888753      2247777776432221 1  1    23456


Q ss_pred             eEEEEEec-CCCEEEEEE-cCCeEEEEECCCC
Q 006743          125 FSSLAFID-DDWILTAGT-SNGRVVFYDIRGK  154 (633)
Q Consensus       125 ItsLafSP-dG~~LatGs-~DGsV~IWDlrs~  154 (633)
                      ..+++++| +|++|++++ .++.|.+|+++..
T Consensus       311 p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            77899998 799887765 5789999987654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.30  E-value=8.2e-05  Score=74.49  Aligned_cols=192  Identities=11%  Similarity=0.115  Sum_probs=117.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC----CCeEEEEECCCCCceeEE
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD----DGTLHLWDTTGRSPKVSW   76 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~----DGtI~IWDl~t~~~~v~~   76 (633)
                      +|.++|+++++-..++.|+.|+..+++....+.. .......|++.++|+ ++++...    .+.|...+..+...  ..
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~-~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~~--~~  121 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNL--QD  121 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSC--EE
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC-CCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCcee--ee
Confidence            4778898666666788899998876655554443 334567899999997 5555432    23455555555442  22


Q ss_pred             eccC---CCCeEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEE-EcCCeE
Q 006743           77 LKQH---SAPTAGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGRV  146 (633)
Q Consensus        77 l~~H---~~~VtsLafSPdg~~LaSgS~------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatG-s~DGsV  146 (633)
                      ...+   ....+.+++.++|++.++-..      .+.+..++...+........-...+.++|+|+++.|..+ ...+.|
T Consensus       122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I  201 (319)
T d2dg1a1         122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRL  201 (319)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCce
Confidence            2222   345788999999987666432      234666776554444334444567889999999876554 567899


Q ss_pred             EEEECCCCCCceEEE-----eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          147 VFYDIRGKPQPLTVL-----RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       147 ~IWDlrs~~k~v~~l-----~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +.||+..........     ...........++++.+|++.++            ....+.|.+||.
T Consensus       202 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va------------~~~~g~V~~~~p  256 (319)
T d2dg1a1         202 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA------------MYGQGRVLVFNK  256 (319)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE------------EETTTEEEEECT
T ss_pred             EEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEE------------EcCCCEEEEECC
Confidence            999987543222211     11122233567888776554443            344566666654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=0.00019  Score=67.92  Aligned_cols=163  Identities=14%  Similarity=0.123  Sum_probs=104.7

Q ss_pred             cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 006743           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (633)
Q Consensus        17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~   94 (633)
                      .|+|.|.. |.....+.. ....+...+|+|||+.+.++....+  .+.+.+..+..  ...+..+...+....|+|+++
T Consensus        20 ~l~i~d~d-G~~~~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETT-SCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCC-CCCcEEEec-CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCC
Confidence            58888875 444444432 2355667899999996555555544  46666666665  456677888899999999999


Q ss_pred             EEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE-cCC--eEEEEECCCCCCceEEEeecCCCC
Q 006743           95 IIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNG--RVVFYDIRGKPQPLTVLRACSSSE  168 (633)
Q Consensus        95 ~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs-~DG--sV~IWDlrs~~k~v~~l~~~~H~~  168 (633)
                      .++......   .+..+.....................+++++..++... .+|  .|.++++....  ...+.  .+..
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~--~~~~  171 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRIT--WEGS  171 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECC--CSSS
T ss_pred             eeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc--ceeee--cccc
Confidence            988766433   33444444444444445556666777888877666544 445  45666666542  22222  4566


Q ss_pred             CeeEEEEccCCCeEEEecc
Q 006743          169 AVSSLCWQRAKPVFIDETT  187 (633)
Q Consensus       169 ~VtsLafsPdg~~Las~s~  187 (633)
                      ......|+|+++.++....
T Consensus       172 ~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEE
T ss_pred             cccccccccccceeEEEee
Confidence            7788899999888776533

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=4.9e-05  Score=73.49  Aligned_cols=178  Identities=12%  Similarity=0.089  Sum_probs=109.0

Q ss_pred             CccCCCCEEEEE-ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743            1 MYNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (633)
Q Consensus         1 AFSpdG~~LaSg-s~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~   79 (633)
                      |+.++|+..++. +..+.|..++....... .+..........|++.+++. ++++....+.+++++..+..  ......
T Consensus        20 avd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~--~~~~~~   95 (260)
T d1rwia_          20 AVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ--TVLPFD   95 (260)
T ss_dssp             EECTTCCEEEEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC--EECCCC
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccce--eeeeee
Confidence            356777755544 34456666654332222 12111122335688999887 66666666666665544433  222223


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (633)
Q Consensus        80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v  158 (633)
                      ......++++.++++++++-..+..+..++.......... .......+++++++++++++...++.|..||......  
T Consensus        96 ~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~--  173 (260)
T d1rwia_          96 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--  173 (260)
T ss_dssp             SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE--
T ss_pred             eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee--
Confidence            3456799999999998887777777888887654432221 2334567899999999888888889999999886532  


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          159 TVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       159 ~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      . ............|+++++|.++++.
T Consensus       174 ~-~~~~~~~~~p~gi~~d~~g~l~vsd  199 (260)
T d1rwia_         174 V-VLPFTDITAPWGIAVDEAGTVYVTE  199 (260)
T ss_dssp             E-ECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred             e-eeeccccCCCccceeeeeeeeeeee
Confidence            1 2212344667889998866554443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.17  E-value=0.00036  Score=67.89  Aligned_cols=179  Identities=11%  Similarity=0.118  Sum_probs=121.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC-----CCCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCCCCcee
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTGRSPKV   74 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~-----~~~~VssLafSpdg~~lLaS-Gs~DGtI~IWDl~t~~~~v   74 (633)
                      |++++|+.+++-..++.|++||. +|+.+..+...     ....-..+++..+...++++ ...++.|.+++.....  .
T Consensus        29 avd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~--~  105 (279)
T d1q7fa_          29 AVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF--V  105 (279)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCE--E
T ss_pred             EEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccccc--e
Confidence            35678887766666788999985 57776666321     11123345655554434443 3455678777765443  3


Q ss_pred             EEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743           75 SWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (633)
Q Consensus        75 ~~l-~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IWD  150 (633)
                      ..+ ........++++.++++++++....+.+.++|.. ++.+..+.   +......+++.++++++++....+.|++||
T Consensus       106 ~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         106 RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN  184 (279)
T ss_dssp             EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEE
T ss_pred             eecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeee
Confidence            333 3445667899999999988888888889999865 55555553   456688899999999888888899999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ....  .+..+...+......+|+++++|+.+++.
T Consensus       185 ~~G~--~~~~~g~~g~~~~P~giavD~~G~i~Vad  217 (279)
T d1q7fa_         185 YEGQ--YLRQIGGEGITNYPIGVGINSNGEILIAD  217 (279)
T ss_dssp             TTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             cCCc--eeeeecccccccCCcccccccCCeEEEEE
Confidence            8754  33444333455668899999987766553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.09  E-value=7.7e-05  Score=73.62  Aligned_cols=173  Identities=12%  Similarity=0.071  Sum_probs=115.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~   78 (633)
                      +|.+||+++++...++.+.+|+.....  ...............+++.++++ ++++-..++.+..+|.......+....
T Consensus        74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~  152 (302)
T d2p4oa1          74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEH  152 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecC
Confidence            478999988888888888888765432  22222333456678899999986 777778888999998876652221111


Q ss_pred             ---------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---eEeeCCCCeEEEEEecCCCEEEEEEcCCeE
Q 006743           79 ---------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS---SCITYEAPFSSLAFIDDDWILTAGTSNGRV  146 (633)
Q Consensus        79 ---------~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v---~~i~h~~~ItsLafSPdG~~LatGs~DGsV  146 (633)
                               .....+..+.+. .+.++++.+..+.|+.+|+......   ...........++++++|++.++...++.|
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V  231 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV  231 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             CccceeeccCccccccccccc-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcE
Confidence                     112345667665 3445666677889999998754332   222345567789999999988888889999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      ..|+.....  .........-...++++|.+
T Consensus       232 ~~i~p~G~~--~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         232 VRIAPDRST--TIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             EEECTTCCE--EEEECGGGTCTTEEEEEECC
T ss_pred             EEECCCCCE--EEEEecCCCCCCceEEEEcC
Confidence            999887542  22222222345578999943

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.1e-05  Score=81.24  Aligned_cols=137  Identities=11%  Similarity=0.086  Sum_probs=93.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC--CCcEEEEEEccCCCeEEEEE--------eCCCeEEEEECCCCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTA--------GDDGTLHLWDTTGRS   71 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~--~~~VssLafSpdg~~lLaSG--------s~DGtI~IWDl~t~~   71 (633)
                      |.++++++. -..+|.|.+||+.+++....+....  ...+....|+||++.+|+..        +..+.+.|||+.++.
T Consensus        24 W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          24 WISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            667776654 3567899999998887654444322  22345578999998544443        235789999998877


Q ss_pred             ceeEEec---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCC-----------------eEEEE
Q 006743           72 PKVSWLK---QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAP-----------------FSSLA  129 (633)
Q Consensus        72 ~~v~~l~---~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~-----------------ItsLa  129 (633)
                      .  ..+.   .....+....|+|||+.||-+. ++.|++.+..++..++...  ....                 -.++-
T Consensus       103 ~--~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         103 P--QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             C--EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             e--eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            3  2332   2334566789999999998877 5679999988776665542  1111                 24678


Q ss_pred             EecCCCEEEEEEc
Q 006743          130 FIDDDWILTAGTS  142 (633)
Q Consensus       130 fSPdG~~LatGs~  142 (633)
                      |+|||++||....
T Consensus       180 WSPDgk~iaf~~~  192 (465)
T d1xfda1         180 WSPDGTRLAYAAI  192 (465)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             ECCCCCeEEEEEe
Confidence            9999999997653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.96  E-value=0.00053  Score=68.40  Aligned_cols=193  Identities=14%  Similarity=0.123  Sum_probs=116.1

Q ss_pred             CccCCCCEEEEEEC-------CCcEEEEECCCCceeEEEeCC---CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743            1 MYNCKDEHLASISL-------SGDLILHNLASGAKAAELKDP---NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (633)
Q Consensus         1 AFSpdG~~LaSgs~-------DG~I~IWDl~tgk~v~~~~~~---~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~   70 (633)
                      +|.++|+++++...       +|.|..||..+++........   ....-..++|.+++. .++++...+.|..+|..+.
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLVVQTDGT  102 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEEEETTSC
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC-EEEEEECCCeEEEEeCCCc
Confidence            47889987765322       467889998877654433211   112245689999987 5666776677888888765


Q ss_pred             CceeEEeccC-C----CCeEEEEEcCCCCEEEEEeC---------------CCeEEEEeCCCCceeeEeeCCCCeEEEEE
Q 006743           71 SPKVSWLKQH-S----APTAGISFSSDDKIIASVGL---------------DKKLYTYDPGSRRPSSCITYEAPFSSLAF  130 (633)
Q Consensus        71 ~~~v~~l~~H-~----~~VtsLafSPdg~~LaSgS~---------------DGtVrIWDlrtgk~v~~i~h~~~ItsLaf  130 (633)
                      ..  ..+... .    ...+.+++.++|++.++-..               +|.|+.++.. ++.......-...+.++|
T Consensus       103 ~~--~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~  179 (314)
T d1pjxa_         103 FE--EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAV  179 (314)
T ss_dssp             EE--ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEE
T ss_pred             EE--EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEE
Confidence            42  222111 1    13578999999988777432               2356666543 444444444445678999


Q ss_pred             ecCCC----EE-EEEEcCCeEEEEECCCCCCce--EEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743          131 IDDDW----IL-TAGTSNGRVVFYDIRGKPQPL--TVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (633)
Q Consensus       131 SPdG~----~L-atGs~DGsV~IWDlrs~~k~v--~~l~~~--~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg  201 (633)
                      +|+++    +| ++-...+.|+.||+.......  +.+...  .+....-.++++.+|+            ++++....+
T Consensus       180 ~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn------------lyVa~~~~g  247 (314)
T d1pjxa_         180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN------------LLVANWGSS  247 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC------------EEEEEETTT
T ss_pred             CCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc------------EEEEEcCCC
Confidence            99765    44 455677889999876542211  111111  1223355677777544            444445577


Q ss_pred             eEEccCCC
Q 006743          202 SILMPDPL  209 (633)
Q Consensus       202 ~IkIWDlr  209 (633)
                      .|.+||..
T Consensus       248 ~I~~~dp~  255 (314)
T d1pjxa_         248 HIEVFGPD  255 (314)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            88888764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.89  E-value=0.0018  Score=63.79  Aligned_cols=178  Identities=13%  Similarity=0.048  Sum_probs=112.5

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |++.++.|.-.. ..+.|..||..+++.. .+.  ....+.++++.++++ +++ ++.+ -|.++|..+++.....-...
T Consensus        25 wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~--~~~~~~~i~~~~dg~-l~v-a~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          25 FDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSK-QLI-ASDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTE-EEE-EETT-EEEEEETTTCCEEEEECSST
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCeEE-EEE--CCCCcEEEEEecCCC-EEE-EEeC-ccEEeecccceeeEEeeeec
Confidence            565555554443 5678999998777543 343  235677889988886 444 4554 58899998877322111111


Q ss_pred             ---CCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEE-EcCCeEEEEECC
Q 006743           81 ---SAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIR  152 (633)
Q Consensus        81 ---~~~VtsLafSPdg~~LaSgS~D----GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatG-s~DGsV~IWDlr  152 (633)
                         ...++++.+.|+|++.++...+    +.-.+|.+..++.......-.....++|+++++.++.. +..+.|+.|++.
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence               2357889999999877765432    24566766677665555545567889999999876654 557889999875


Q ss_pred             CCC-----CceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743          153 GKP-----QPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       153 s~~-----k~v~~l~~~~H~~~VtsLafsPdg~~Las~  185 (633)
                      ...     +........+..+....++++.+|++.++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         179 ARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             TTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             ccccccccceEEEeccCcccccccceEEcCCCCEEeee
Confidence            321     111222322445567888888876655443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.88  E-value=0.00096  Score=66.37  Aligned_cols=177  Identities=14%  Similarity=0.115  Sum_probs=107.0

Q ss_pred             ccCCCCEEEEEEC----CCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeC------CCeEEEEECCCC
Q 006743            2 YNCKDEHLASISL----SGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGD------DGTLHLWDTTGR   70 (633)
Q Consensus         2 FSpdG~~LaSgs~----DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~------DGtI~IWDl~t~   70 (633)
                      |++||+++++...    .+.|...+.........+.. ........+++.++|+ ++++...      .+.+..++....
T Consensus        89 ~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~  167 (319)
T d2dg1a1          89 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR  167 (319)
T ss_dssp             ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             ECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc
Confidence            5677766655432    22344444444433333322 1234567889999997 5554322      133555555444


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEeCCCC-ceeeEe--------eCCCCeEEEEEecCCCEEEEE
Q 006743           71 SPKVSWLKQHSAPTAGISFSSDDKIIAS-VGLDKKLYTYDPGSR-RPSSCI--------TYEAPFSSLAFIDDDWILTAG  140 (633)
Q Consensus        71 ~~~v~~l~~H~~~VtsLafSPdg~~LaS-gS~DGtVrIWDlrtg-k~v~~i--------~h~~~ItsLafSPdG~~LatG  140 (633)
                      .  +..+...-...+.|+|+|+++.|+. -+..+.|+.||+... ......        ........|+++.+|++.++.
T Consensus       168 ~--~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         168 T--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             C--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             e--eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            3  3333333345688999999986654 456789999998642 221111        122346789999999988888


Q ss_pred             EcCCeEEEEECCCCCCceEEEeec----CCCCCeeEEEEccCCCeEE
Q 006743          141 TSNGRVVFYDIRGKPQPLTVLRAC----SSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       141 s~DGsV~IWDlrs~~k~v~~l~~~----~H~~~VtsLafsPdg~~La  183 (633)
                      ...+.|.+||...  +.+..+..+    ++...+++++|.+.+..++
T Consensus       246 ~~~g~V~~~~p~G--~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         246 YGQGRVLVFNKRG--YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             ETTTEEEEECTTS--CEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             cCCCEEEEECCCC--cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence            8999999999753  344555543    3455688999988654443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=0.0011  Score=62.30  Aligned_cols=94  Identities=17%  Similarity=0.249  Sum_probs=64.5

Q ss_pred             ccCC--CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCcee
Q 006743            2 YNCK--DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSPKV   74 (633)
Q Consensus         2 FSpd--G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG-----tI~IWDl~t~~~~v   74 (633)
                      .+||  |+++|-.+ +|.|.++|+.+++.. .+.. +...+...+|+|||+.+.++...++     .|.+++..+++.  
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~--   80 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--   80 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--
Confidence            4889  99988664 568999999877754 4443 3455677899999996555554333     477777776662  


Q ss_pred             EEeccC-------CCCeEEEEEcCCCCEEEEEe
Q 006743           75 SWLKQH-------SAPTAGISFSSDDKIIASVG  100 (633)
Q Consensus        75 ~~l~~H-------~~~VtsLafSPdg~~LaSgS  100 (633)
                      ..+..+       ........|+|+++.|+...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            333222       23457788999999988754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00034  Score=73.90  Aligned_cols=177  Identities=8%  Similarity=0.038  Sum_probs=105.4

Q ss_pred             ccCCCCEEEEEEC---------CCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 006743            2 YNCKDEHLASISL---------SGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS   71 (633)
Q Consensus         2 FSpdG~~LaSgs~---------DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~   71 (633)
                      |+|||++|+....         .+.+.+||+.++........ .....+....|+|+|+.+.++  .++.|++.+..++.
T Consensus        68 ~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~~~~  145 (465)
T d1xfda1          68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHVGKQ  145 (465)
T ss_dssp             ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSSSSC
T ss_pred             ECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE--ecceEEEEecCCCc
Confidence            7999999887643         46789999988765432221 112334457899999954443  36789999887665


Q ss_pred             ceeEEeccCCCCe-----------------EEEEEcCCCCEEEEEeCC-C------------------------------
Q 006743           72 PKVSWLKQHSAPT-----------------AGISFSSDDKIIASVGLD-K------------------------------  103 (633)
Q Consensus        72 ~~v~~l~~H~~~V-----------------tsLafSPdg~~LaSgS~D-G------------------------------  103 (633)
                      ....+..+....|                 .++-|+|||++||....| .                              
T Consensus       146 ~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~n  225 (465)
T d1xfda1         146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (465)
T ss_dssp             CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             eEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCC
Confidence            4322222222222                 467899999999986532 1                              


Q ss_pred             ---eEEEEeCCCCceeeEe-e------CCCCeEEEEEecCCCEEEEEEc-C---CeEEEEECCCCCCceEEEeecCCCCC
Q 006743          104 ---KLYTYDPGSRRPSSCI-T------YEAPFSSLAFIDDDWILTAGTS-N---GRVVFYDIRGKPQPLTVLRACSSSEA  169 (633)
Q Consensus       104 ---tVrIWDlrtgk~v~~i-~------h~~~ItsLafSPdG~~LatGs~-D---GsV~IWDlrs~~k~v~~l~~~~H~~~  169 (633)
                         .+.++|+.++...... .      ....+..+.|.+++++++.... +   ..|.++|..++.. ...+.. ...++
T Consensus       226 p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~-~~~~~e-~~~~w  303 (465)
T d1xfda1         226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHED-ESEAW  303 (465)
T ss_dssp             CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEE-ECSSC
T ss_pred             CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE-EEEEEE-cCCce
Confidence               2445555444322211 0      1223677899999886665433 2   2588899988743 233321 23333


Q ss_pred             e----eEEEEccCCCeE
Q 006743          170 V----SSLCWQRAKPVF  182 (633)
Q Consensus       170 V----tsLafsPdg~~L  182 (633)
                      |    ....|.++|+.+
T Consensus       304 v~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         304 LHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CCCCCCCCEECTTSCSE
T ss_pred             EeccCCceeEccCCCee
Confidence            3    345778877654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.50  E-value=0.011  Score=57.88  Aligned_cols=166  Identities=14%  Similarity=0.100  Sum_probs=106.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC---CCCcEEEEEEccCCCeEEEEEeC----CCeEEEEECCCCCcee
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP---NEQVLRVLDYSRNSRHLLVTAGD----DGTLHLWDTTGRSPKV   74 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~---~~~~VssLafSpdg~~lLaSGs~----DGtI~IWDl~t~~~~v   74 (633)
                      +..+|++++ ++.+ .|.++|..+++........   ....++.+.+.++|+ +.++...    .+.-.+|.+..++  +
T Consensus        66 ~~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~--~  140 (295)
T d2ghsa1          66 KISDSKQLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGK--V  140 (295)
T ss_dssp             EEETTEEEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTE--E
T ss_pred             EecCCCEEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCc--E
Confidence            345665554 4554 5899999888755433211   233578889999998 4443322    2345667665554  2


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC------ceeeEe---eCCCCeEEEEEecCCCEEEEEEcCC
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSR------RPSSCI---TYEAPFSSLAFIDDDWILTAGTSNG  144 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtg------k~v~~i---~h~~~ItsLafSPdG~~LatGs~DG  144 (633)
                      ..+...-...+.++|+++++.++ +-+..+.|+.|++...      +.....   ...+....++++.+|++.++.-..+
T Consensus       141 ~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g  220 (295)
T d2ghsa1         141 TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG  220 (295)
T ss_dssp             EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC
Confidence            33333334578999999888655 4556778999887431      111111   2345688999999999888877889


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 006743          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ  176 (633)
Q Consensus       145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafs  176 (633)
                      .|..||....  .+..+..+  ...+++++|-
T Consensus       221 ~V~~~dp~G~--~~~~i~lP--~~~~T~~~FG  248 (295)
T d2ghsa1         221 AVDRYDTDGN--HIARYEVP--GKQTTCPAFI  248 (295)
T ss_dssp             EEEEECTTCC--EEEEEECS--CSBEEEEEEE
T ss_pred             ceEEecCCCc--EeeEecCC--CCceEEEEEe
Confidence            9999997643  45555533  3568999985

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.17  E-value=0.0093  Score=62.24  Aligned_cols=191  Identities=12%  Similarity=0.016  Sum_probs=119.4

Q ss_pred             CCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCC------------------eEE
Q 006743            4 CKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDG------------------TLH   63 (633)
Q Consensus         4 pdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DG------------------tI~   63 (633)
                      +||++|++.. .++.|.+.|+.+.+..+.+.......+..++..++.+ .+++.++.+.                  .+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4788888876 5789999999999987766666666777777655432 2555555532                  356


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC--------------------------------------CeE
Q 006743           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD--------------------------------------KKL  105 (633)
Q Consensus        64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D--------------------------------------GtV  105 (633)
                      +.|..+.+...+...  ......++++++|+++++.+.+                                      +-+
T Consensus       177 ~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            778877663322222  3456788999999999887743                                      123


Q ss_pred             EEEeCCCC---ceeeEeeCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCC-------CceEEEe-ecCCCCCeeEE
Q 006743          106 YTYDPGSR---RPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKP-------QPLTVLR-ACSSSEAVSSL  173 (633)
Q Consensus       106 rIWDlrtg---k~v~~i~h~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~-------k~v~~l~-~~~H~~~VtsL  173 (633)
                      .+.|.++.   ..+..+........+.++|||+++++++. +.+|.|+|+++..       .+...+. .....-.-...
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence            44554431   23334444455667899999999987665 8899999997421       1111111 11122223344


Q ss_pred             EEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       174 afsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      +|+.            .+..+.+.-.|..|.-|++
T Consensus       335 ~fd~------------~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         335 AFDG------------RGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             EECT------------TSEEEEEETTTTEEEEEEH
T ss_pred             ccCC------------CceEEEEeeccceEEEEec
Confidence            5544            3445555556899999987

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.15  E-value=0.0035  Score=58.57  Aligned_cols=95  Identities=13%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             EEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEeCCCCce
Q 006743           44 DYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-D-----KKLYTYDPGSRRP  115 (633)
Q Consensus        44 afSpd--g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~-D-----GtVrIWDlrtgk~  115 (633)
                      ..+|+  |+.++++.  +|.|.++|+.+++  .+.+..+...+...+|+|||++|+.... +     ..|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            35788  88555443  4679999999887  4556777788999999999999987643 2     2488888888876


Q ss_pred             eeEeeC-------CCCeEEEEEecCCCEEEEEEc
Q 006743          116 SSCITY-------EAPFSSLAFIDDDWILTAGTS  142 (633)
Q Consensus       116 v~~i~h-------~~~ItsLafSPdG~~LatGs~  142 (633)
                      ..+...       ........|+|+|+.|+....
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            654322       234567899999999887543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.80  E-value=0.05  Score=55.20  Aligned_cols=201  Identities=12%  Similarity=0.120  Sum_probs=120.7

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEc------cCCCeEEEEEeCC---CeEEEEECCCCCcee
Q 006743            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYS------RNSRHLLVTAGDD---GTLHLWDTTGRSPKV   74 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafS------pdg~~lLaSGs~D---GtI~IWDl~t~~~~v   74 (633)
                      |+..+++...+++-|++||+ +|+.+..+..   ..+..|..-      .....++++...+   ..|.+|.+......+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~---Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYHT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECCS---SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEeccc---CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            34556666677777999998 5888877753   334444432      1122133333332   368888885433223


Q ss_pred             EEeccC-------CCCeEEEEE--cC-CCC-EEEEEeCCCeEEEEeCC---CC----ceeeEeeCCCCeEEEEEecCCCE
Q 006743           75 SWLKQH-------SAPTAGISF--SS-DDK-IIASVGLDKKLYTYDPG---SR----RPSSCITYEAPFSSLAFIDDDWI  136 (633)
Q Consensus        75 ~~l~~H-------~~~VtsLaf--SP-dg~-~LaSgS~DGtVrIWDlr---tg----k~v~~i~h~~~ItsLafSPdG~~  136 (633)
                      ..+...       ...|+.+|+  ++ ++. ++++...+|.+..|.+.   .+    +.++.+.....+..|.+++....
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS  193 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence            333221       234777777  66 454 46667778888888663   33    34455667788999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCC-CceEEE-eec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC-C
Q 006743          137 LTAGTSNGRVVFYDIRGKP-QPLTVL-RAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP-S  211 (633)
Q Consensus       137 LatGs~DGsV~IWDlrs~~-k~v~~l-~~~--~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~-~  211 (633)
                      |+.+-++.-|..|+..-.. .....+ ...  ....-+..|+.-.       + ....+.++++...+++..+||... +
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~-------~-~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYY-------A-ADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEE-------C-GGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEE-------c-CCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            9999998888777765221 111222 111  1344566666433       1 123456667777799999998754 3


Q ss_pred             CCCCc
Q 006743          212 VTTSS  216 (633)
Q Consensus       212 ~~~ss  216 (633)
                      ...++
T Consensus       266 ~~~g~  270 (353)
T d1h6la_         266 KYVAD  270 (353)
T ss_dssp             CEEEE
T ss_pred             cccce
Confidence            44433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.47  Score=45.14  Aligned_cols=192  Identities=11%  Similarity=0.002  Sum_probs=111.8

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l   77 (633)
                      |++.+++|+... .++.|.-.++....   ....+.......+..|++.+.++++.++-...+.|.+.++.+... ...+
T Consensus        37 ~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-~~~~  115 (266)
T d1ijqa1          37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF  115 (266)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEE
T ss_pred             EEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceE-EEEE
Confidence            444455555443 23445544443211   112222222334556888877777777777788999999987763 3334


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCC
Q 006743           78 KQHSAPTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRG  153 (633)
Q Consensus        78 ~~H~~~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatG-s~DGsV~IWDlrs  153 (633)
                      .........++++|...+|+...  ..+.|...++.......... .-..+..+++++.++.|..+ ...+.|...|+..
T Consensus       116 ~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         116 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            45556789999999544444433  34567777876544444443 34567899999987777665 5568899999976


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      ... ..............++++.             ++.++++...++.|...+.
T Consensus       196 ~~~-~~~~~~~~~~~~p~~lav~-------------~~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         196 GNR-KTILEDEKRLAHPFSLAVF-------------EDKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             CSC-EEEEECTTTTSSEEEEEEE-------------TTEEEEEETTTTEEEEEET
T ss_pred             CCE-EEEEeCCCcccccEEEEEE-------------CCEEEEEECCCCeEEEEEC
Confidence            532 2333322222345566654             3345555555666655543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.32  E-value=0.12  Score=53.65  Aligned_cols=135  Identities=10%  Similarity=0.031  Sum_probs=93.6

Q ss_pred             EEEEECCCcEEEEECCCCceeEEEeCCCC--------------------------------------CcEE--EEEEc--
Q 006743            9 LASISLSGDLILHNLASGAKAAELKDPNE--------------------------------------QVLR--VLDYS--   46 (633)
Q Consensus         9 LaSgs~DG~I~IWDl~tgk~v~~~~~~~~--------------------------------------~~Vs--sLafS--   46 (633)
                      +.+|+..|.|+|+-+.+++.+..+.....                                      +-..  .+.+.  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            45788999999999999887766532000                                      0000  12332  


Q ss_pred             -cCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCC------------------eE
Q 006743           47 -RNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDK------------------KL  105 (633)
Q Consensus        47 -pdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DG------------------tV  105 (633)
                       +||+.+++.-..+..|.+-|+...+............+..++..+  +-.+++..+.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence             257756666667899999999988753222334456678777755  566777777633                  36


Q ss_pred             EEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743          106 YTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (633)
Q Consensus       106 rIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D  143 (633)
                      .++|..+.+....+...+....+.++++|+++++.+.+
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEecc
Confidence            78899998888777767778899999999999987753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.12  E-value=0.61  Score=44.30  Aligned_cols=188  Identities=10%  Similarity=0.015  Sum_probs=113.1

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (633)
Q Consensus         2 FSpdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H   80 (633)
                      |+..++.|+... .++.|+..++........+.. ....+..|++..-++++.++-...+.|.+.++.+.... ..+...
T Consensus        43 ~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~  120 (263)
T d1npea_          43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDTG  120 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSS
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe-ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-EEeccc
Confidence            455566666554 346677777754443333332 23456778888767766677777889999999877642 223333


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-C--CCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCC
Q 006743           81 SAPTAGISFSSDDKIIASVG-L--DKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRGKP  155 (633)
Q Consensus        81 ~~~VtsLafSPdg~~LaSgS-~--DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatG-s~DGsV~IWDlrs~~  155 (633)
                      ...+..+++.|...+++... .  ...|...++.......... .-.....+++++.++.|..+ ...+.|...|+....
T Consensus       121 l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            46789999999555554433 2  2245555665443333332 33567899999888777655 457889999997653


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                       ...++.  +. ....+|++.             ++.++++....+.|...|.
T Consensus       201 -~~~v~~--~~-~~P~~lav~-------------~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         201 -RRKVLE--GL-QYPFAVTSY-------------GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             -EEEEEE--CC-CSEEEEEEE-------------TTEEEEEETTTTEEEEEET
T ss_pred             -eEEEEC--CC-CCcEEEEEE-------------CCEEEEEECCCCEEEEEEC
Confidence             222333  21 123456653             3445555555666666655

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.11  E-value=0.04  Score=54.17  Aligned_cols=150  Identities=17%  Similarity=0.093  Sum_probs=90.1

Q ss_pred             CCCCEEEEEECCC-----------cEEEEECCCCcee--EEEeCCCCCcEEEEEEccCCCeEEEEEeCC-CeEEEEECCC
Q 006743            4 CKDEHLASISLSG-----------DLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDD-GTLHLWDTTG   69 (633)
Q Consensus         4 pdG~~LaSgs~DG-----------~I~IWDl~tgk~v--~~~~~~~~~~VssLafSpdg~~lLaSGs~D-GtI~IWDl~t   69 (633)
                      .+|+.++.|+.+.           .+.+||..+++-.  ......+.......++.+++. +++.|+.+ ..+.+||..+
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGG
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCcc
Confidence            4678888887531           3779999887532  223322323333467888887 77777654 6899999977


Q ss_pred             CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeeEee----------C-----CCCeEEE
Q 006743           70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCIT----------Y-----EAPFSSL  128 (633)
Q Consensus        70 ~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D------GtVrIWDlrtgk~v~~i~----------h-----~~~ItsL  128 (633)
                      ..............-...+..+|+++++.|+.+      ..+.+||+.+.+-...-.          +     ......+
T Consensus       108 ~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (387)
T d1k3ia3         108 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL  187 (387)
T ss_dssp             TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred             CcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEE
Confidence            653211111112223456677799999998753      368999998765332110          0     0111112


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCC
Q 006743          129 AFIDDDWILTAGTSNGRVVFYDIRGK  154 (633)
Q Consensus       129 afSPdG~~LatGs~DGsV~IWDlrs~  154 (633)
                      ..-++|+.++.+..++.+.++|..+.
T Consensus       188 ~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         188 FGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             EEeCCCCEEEecCcCCcEEecCcccC
Confidence            33456777777777777788777665

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.03  E-value=0.15  Score=54.37  Aligned_cols=141  Identities=10%  Similarity=0.021  Sum_probs=86.8

Q ss_pred             CcEEEEECCCCceeEEEeCCCCC---------cEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeEEecc-----
Q 006743           16 GDLILHNLASGAKAAELKDPNEQ---------VLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-----   79 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~~~~---------~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~~~v~~l~~-----   79 (633)
                      ..|...|.++|+.+-.++..+.+         .+. ..+..++.  ..++.++.+|.+++.|..+++.+...-..     
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l-~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~  350 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             cceeeeeccchhheecccccCccccccccccccce-eeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccc
Confidence            45778899999988877743221         111 12223332  35678889999999999887743211000     


Q ss_pred             -------------------------------CCCCe--EEEEEcCCCCEEEEEeCC------------------------
Q 006743           80 -------------------------------HSAPT--AGISFSSDDKIIASVGLD------------------------  102 (633)
Q Consensus        80 -------------------------------H~~~V--tsLafSPdg~~LaSgS~D------------------------  102 (633)
                                                     ..+..  ...+++|+...++....+                        
T Consensus       351 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (571)
T d2ad6a1         351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence                                           00000  124667766666554332                        


Q ss_pred             -------------CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743          103 -------------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus       103 -------------GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                                   |.|.-+|+.+++.+-......+..+-.+.-.+.+|++|+.||.++.+|.++++..
T Consensus       431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence                         3577888888888766654433332223335678888999999999999998543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.75  Score=43.61  Aligned_cols=171  Identities=11%  Similarity=0.038  Sum_probs=103.7

Q ss_pred             CEEEEEECCCcEEEEECCCCcee-----EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            7 EHLASISLSGDLILHNLASGAKA-----AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         7 ~~LaSgs~DG~I~IWDl~tgk~v-----~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      .+|+.+ ..+.|+-.+++.....     ..+.. ....+..|+|...++.++.+-..++.|+..++.+... ...+....
T Consensus         2 ~fLl~s-~~~~I~~~~ld~~~~~~~~~~~~~~~-~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~   78 (263)
T d1npea_           2 THLLFA-QTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDL   78 (263)
T ss_dssp             EEEEEE-EEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTC
T ss_pred             CEEEEe-CCCeEEEEECCCcccccccccccccc-CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEecc
Confidence            344433 3457777776543211     11211 2234566899888776666666778899999987663 33344444


Q ss_pred             CCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCCC
Q 006743           82 APTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSN---GRVVFYDIRGKPQ  156 (633)
Q Consensus        82 ~~VtsLafSPdg~~L-aSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~D---GsV~IWDlrs~~k  156 (633)
                      ..+.++++..-+..| ++-...+.|.+.++........+. ....+..++++|...+|+.....   +.|.--++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            678999998745555 455567799999998665444443 33678999999987777654332   3355556665432


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEE
Q 006743          157 PLTVLRACSSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       157 ~v~~l~~~~H~~~VtsLafsPdg~~La  183 (633)
                       .....  ..-....++++++.++.|.
T Consensus       159 -~~i~~--~~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         159 -RILAQ--DNLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             -EEEEC--TTCSCEEEEEEETTTTEEE
T ss_pred             -eeeee--ecccccceEEEeecCcEEE
Confidence             22222  2335668899987655443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.78  Score=43.49  Aligned_cols=169  Identities=7%  Similarity=-0.039  Sum_probs=102.4

Q ss_pred             EEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccCCCCeE
Q 006743            9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQHSAPTA   85 (633)
Q Consensus         9 LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---~~v~~l~~H~~~Vt   85 (633)
                      |+.+. ...|+..++.+......+.  ....+..|+|.+..+.++.+=..++.|+..++....   .....+......+.
T Consensus         4 Ll~s~-~~~I~~~~l~~~~~~~~~~--~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           4 LFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEC-CCeEEEEECCCCcceeeeC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            44343 4468889997655444443  233456799998877566655567778877765322   11223333445677


Q ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCCCceEEE
Q 006743           86 GISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT--SNGRVVFYDIRGKPQPLTVL  161 (633)
Q Consensus        86 sLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs--~DGsV~IWDlrs~~k~v~~l  161 (633)
                      ++++...+. +.++-...+.|.+.++......... ........++++|...+|....  ..+.|.-.++.... . ..+
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~-~~l  158 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-I-YSL  158 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-E-EEE
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-e-ecc
Confidence            899987444 4455556678999999876554444 3456789999999766666544  34567777776542 2 222


Q ss_pred             eecCCCCCeeEEEEccCCCeEE
Q 006743          162 RACSSSEAVSSLCWQRAKPVFI  183 (633)
Q Consensus       162 ~~~~H~~~VtsLafsPdg~~La  183 (633)
                      .. ..-....++++++.+..|.
T Consensus       159 ~~-~~~~~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         159 VT-ENIQWPNGITLDLLSGRLY  179 (266)
T ss_dssp             EC-SSCSCEEEEEEETTTTEEE
T ss_pred             cc-cccceeeEEEeeccccEEE
Confidence            21 2335678899888644443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.54  E-value=1.3  Score=43.62  Aligned_cols=148  Identities=14%  Similarity=0.166  Sum_probs=96.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (633)
Q Consensus         2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~   81 (633)
                      .||..+.||.-+ ...+.|||+++.+.++.+.- ...++. -+|-.+.  .|+... +..|+-|++++...+++.+..|.
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~Vvf-WkWis~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTF-WKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCE-EEESSSS--EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEE-EEecCCC--EEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            467888888766 56899999999999988874 345554 5777554  455544 46799999976655666666553


Q ss_pred             ----CCeEEEEEcCCCCEEEEEe---CC----CeEEEEeCCCCce-----------------------------------
Q 006743           82 ----APTAGISFSSDDKIIASVG---LD----KKLYTYDPGSRRP-----------------------------------  115 (633)
Q Consensus        82 ----~~VtsLafSPdg~~LaSgS---~D----GtVrIWDlrtgk~-----------------------------------  115 (633)
                          ..|..-..+++.++++..+   .+    |.+.+|..+.+..                                   
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence                4566667777777766543   11    3444554432100                                   


Q ss_pred             -eeEe--e----------------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743          116 -SSCI--T----------------------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (633)
Q Consensus       116 -v~~i--~----------------------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~  155 (633)
                       ++.+  +                      ..+-..+|..++....+..-+.-|.|++||+.++.
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence             0000  0                      12234466777777788899999999999999984

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.45  E-value=0.18  Score=53.57  Aligned_cols=142  Identities=14%  Similarity=0.163  Sum_probs=89.8

Q ss_pred             CcEEEEECCCCceeEEEeCCCCCc----------EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe-
Q 006743           16 GDLILHNLASGAKAAELKDPNEQV----------LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT-   84 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~~~~~----------VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V-   84 (633)
                      ..|...|+.+++.+..++..+.+.          +..+.........++.+..+|.++++|..+++.....-....... 
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            357777888998887766432221          122222222234677888999999999988874422211110000 


Q ss_pred             ----------------------------------EEEEEcCCCCEEEEEeC-----------------------------
Q 006743           85 ----------------------------------AGISFSSDDKIIASVGL-----------------------------  101 (633)
Q Consensus        85 ----------------------------------tsLafSPdg~~LaSgS~-----------------------------  101 (633)
                                                        ...+++|+..+++....                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                              13456676666665432                             


Q ss_pred             -------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743          102 -------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus       102 -------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                             .|.|.-||+.+++.+-.+....+...-.+.-.+.+|++|+.||.++.||.++++..
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence                   24678899999998877765544443334445778889999999999999999543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.13  E-value=0.88  Score=45.01  Aligned_cols=172  Identities=14%  Similarity=0.106  Sum_probs=97.0

Q ss_pred             cCCCCEEEEEEC------------CCcEEEEECCCCcee-EE--EeCCCC----CcEEEEEE--ccCCCeEEEEEe---C
Q 006743            3 NCKDEHLASISL------------SGDLILHNLASGAKA-AE--LKDPNE----QVLRVLDY--SRNSRHLLVTAG---D   58 (633)
Q Consensus         3 SpdG~~LaSgs~------------DG~I~IWDl~tgk~v-~~--~~~~~~----~~VssLaf--Spdg~~lLaSGs---~   58 (633)
                      .++|..+++++.            .|.|.++|+.+.+.. ..  +.+...    -....+..  ..++..+|++..   .
T Consensus        43 ~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~  122 (340)
T d1v04a_          43 LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS  122 (340)
T ss_dssp             CTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTT
T ss_pred             CCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCC
Confidence            467766665532            489999998765422 12  221110    01223333  445665566654   3


Q ss_pred             CCeEEEEECCCCCceeEEec----cCCCCeEEEEEcCCCCEEEEEe--C---------------CCeEEEEeCCCCceee
Q 006743           59 DGTLHLWDTTGRSPKVSWLK----QHSAPTAGISFSSDDKIIASVG--L---------------DKKLYTYDPGSRRPSS  117 (633)
Q Consensus        59 DGtI~IWDl~t~~~~v~~l~----~H~~~VtsLafSPdg~~LaSgS--~---------------DGtVrIWDlrtgk~v~  117 (633)
                      ..+|.||++...........    ......+++++..++..+++-.  .               -+.|..||.  +....
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~  200 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV  200 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEE
Confidence            56788888854442222221    1224578999988888777731  1               123444543  33333


Q ss_pred             EeeCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743          118 CITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (633)
Q Consensus       118 ~i~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP  177 (633)
                      ....-...+.++++||+++|+++. ..++|++|++..... ........-.+..-.+.+++
T Consensus       201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECT
T ss_pred             EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCCCCCCccEEec
Confidence            334456789999999998877654 578899999976532 22222222344556677665

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.71  E-value=0.26  Score=52.28  Aligned_cols=80  Identities=11%  Similarity=0.183  Sum_probs=49.2

Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeE--EEEEecCCC-E
Q 006743           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS--SLAFIDDDW-I  136 (633)
Q Consensus        60 GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~It--sLafSPdG~-~  136 (633)
                      |.|.-||+.+++.  .+-.........=.+.-.+.+++.|+.||.++.+|.++|+.+-.+.....+.  -+.+..+|+ |
T Consensus       438 G~l~A~D~~tGk~--~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKA--AWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEE--EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeE--eeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4577778877763  2222222222221222357788899999999999999999998775433332  245556775 5


Q ss_pred             EEEEE
Q 006743          137 LTAGT  141 (633)
Q Consensus       137 LatGs  141 (633)
                      |++..
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.60  E-value=0.29  Score=51.96  Aligned_cols=49  Identities=8%  Similarity=0.106  Sum_probs=35.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEE--EEEecCCC-EEEEE
Q 006743           92 DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSS--LAFIDDDW-ILTAG  140 (633)
Q Consensus        92 dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~Its--LafSPdG~-~LatG  140 (633)
                      .+.++++|+.|+.++.+|.++|+.+-.+.....+..  +.|.-+|+ ||++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~  538 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA  538 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            577888999999999999999999987754333322  45556776 44443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.60  E-value=0.4  Score=50.87  Aligned_cols=54  Identities=19%  Similarity=0.388  Sum_probs=39.1

Q ss_pred             eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743          104 KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus       104 tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      .|.-||+.+++.+-......+...-...-.|.+|++|+.||.++.||.++++..
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            577788888887766654443332233446888999999999999999999643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.94  E-value=0.3  Score=51.99  Aligned_cols=50  Identities=8%  Similarity=-0.041  Sum_probs=36.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEE--EEEecCCC-EEEEEE
Q 006743           92 DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSS--LAFIDDDW-ILTAGT  141 (633)
Q Consensus        92 dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~Its--LafSPdG~-~LatGs  141 (633)
                      .+.++++++.|+.++.+|.++|+.+-.+.....+.+  +.|..||+ ||++..
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            467888899999999999999999987754444332  55666775 554433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.56  E-value=4.1  Score=40.61  Aligned_cols=107  Identities=13%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             ccCCCCEEEEE-ECCC----cEEEEECCCCceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeC---------------CC
Q 006743            2 YNCKDEHLASI-SLSG----DLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGD---------------DG   60 (633)
Q Consensus         2 FSpdG~~LaSg-s~DG----~I~IWDl~tgk~v~~-~~~~~~~~VssLafSpdg~~lLaSGs~---------------DG   60 (633)
                      ++||+++++.+ +.+|    .|+++|+.+++.+.. +..   .....++|.++++.++.+.-.               ..
T Consensus       132 ~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~  208 (430)
T d1qfma1         132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (430)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             ecCCCCEEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcCCCCEEEEEEeccccCcccccccccCCcc
Confidence            68999988854 3333    699999999987643 221   111347899999865555422               23


Q ss_pred             eEEEEECCCCCce-eEEeccCC--CCeEEEEEcCCCCEEEEEeC---CC--eEEEEeCC
Q 006743           61 TLHLWDTTGRSPK-VSWLKQHS--APTAGISFSSDDKIIASVGL---DK--KLYTYDPG  111 (633)
Q Consensus        61 tI~IWDl~t~~~~-v~~l~~H~--~~VtsLafSPdg~~LaSgS~---DG--tVrIWDlr  111 (633)
                      .|.+|.+.+.... +..+....  ..+..+..+.++++++....   +.  .+.+.|+.
T Consensus       209 ~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~  267 (430)
T d1qfma1         209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (430)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             eEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCC
Confidence            6888888665422 22333332  34667778889998765432   22  34555654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.53  E-value=1.1  Score=47.86  Aligned_cols=142  Identities=11%  Similarity=0.034  Sum_probs=86.7

Q ss_pred             CcEEEEECCCCceeEEEeCCCCC--------cEEEEEE-ccCC--CeEEEEEeCCCeEEEEECCCCCceeEEecc-CC--
Q 006743           16 GDLILHNLASGAKAAELKDPNEQ--------VLRVLDY-SRNS--RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HS--   81 (633)
Q Consensus        16 G~I~IWDl~tgk~v~~~~~~~~~--------~VssLaf-Spdg--~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~-H~--   81 (633)
                      ..|...|+.+|+.+-.++..+.+        ....+.. ..++  ...++.+..+|.++++|..+++.....-.. ..  
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~  357 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccc
Confidence            34778899999988877643221        1111121 2233  246788899999999999888743211000 00  


Q ss_pred             ---------CC-------------e-------------EEEEEcCCCCEEEEEeC-------------------------
Q 006743           82 ---------AP-------------T-------------AGISFSSDDKIIASVGL-------------------------  101 (633)
Q Consensus        82 ---------~~-------------V-------------tsLafSPdg~~LaSgS~-------------------------  101 (633)
                               .+             -             ...+++|+..+++....                         
T Consensus       358 ~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (596)
T d1w6sa_         358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (596)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccc
Confidence                     00             0             12355665555544321                         


Q ss_pred             --------------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743          102 --------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus       102 --------------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                                    -|.|.-||+.+++.+-...+..++..-.+...|..|+.|+.||.++.||.++++..
T Consensus       438 ~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence                          14688888888888766554444433333446788889999999999999999543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.92  E-value=0.53  Score=45.58  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             EccCCCeEEEEEeCCC-----------eEEEEECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEeC
Q 006743           45 YSRNSRHLLVTAGDDG-----------TLHLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLD-KKLYTYDP  110 (633)
Q Consensus        45 fSpdg~~lLaSGs~DG-----------tI~IWDl~t~~~~--v~~l~~H~~~VtsLafSPdg~~LaSgS~D-GtVrIWDl  110 (633)
                      ...+++ +++.|+.+.           .+.+||..+....  ......|.......++.+++++++.|+.+ ..+.+||.
T Consensus        27 ~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          27 EPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             ETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred             EeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence            344554 777776421           3789999876532  11223343444566788899999998766 48999999


Q ss_pred             CCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcC------CeEEEEECCCC
Q 006743          111 GSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSN------GRVVFYDIRGK  154 (633)
Q Consensus       111 rtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~D------GsV~IWDlrs~  154 (633)
                      .+..-...-  .....-.+++..+||++++.|+.+      ..+.+||+.+.
T Consensus       106 ~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         106 SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            876654322  222334466777899999998753      35899999876

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.83  E-value=0.67  Score=46.80  Aligned_cols=102  Identities=9%  Similarity=0.024  Sum_probs=64.4

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCC----eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC--------------
Q 006743           83 PTAGISFSSDDKIIASVG-LDK----KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN--------------  143 (633)
Q Consensus        83 ~VtsLafSPdg~~LaSgS-~DG----tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D--------------  143 (633)
                      .+..++++|++++++.+- .+|    .|+++|+.+++.+...-.......++|.+|+..|+....+              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            345678899999887543 333    7999999999876432222223568899999988765432              


Q ss_pred             --CeEEEEECCCCCCc-eEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743          144 --GRVVFYDIRGKPQP-LTVLRACSSSEAVSSLCWQRAKPVFID  184 (633)
Q Consensus       144 --GsV~IWDlrs~~k~-v~~l~~~~H~~~VtsLafsPdg~~Las  184 (633)
                        ..|+.|.+.+.... ..++........+..+..+.++++++.
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence              25888888765322 233332223345666777777766643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.21  E-value=3.6  Score=43.21  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=41.6

Q ss_pred             CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743          103 KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (633)
Q Consensus       103 GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~  157 (633)
                      |.|.-+|+.+++.+-......++..-.+...|.+|++|+.||.++.||.++++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            5688889999988877654444443334456788889999999999999999543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.56  E-value=1.3  Score=46.86  Aligned_cols=79  Identities=13%  Similarity=0.147  Sum_probs=48.7

Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeE--EEEEecCCC-E
Q 006743           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS--SLAFIDDDW-I  136 (633)
Q Consensus        60 GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~It--sLafSPdG~-~  136 (633)
                      |.|.-+|+.+++..  +-.....++..=.....+.+++.|+.||.++.+|.++|+.+-.+.....+.  -+.|..+|+ |
T Consensus       466 G~l~AiD~~TG~i~--W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVV--WEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEE--EEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEE--eecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            45666777776632  222222222221223357788899999999999999999998775433322  256667885 5


Q ss_pred             EEEE
Q 006743          137 LTAG  140 (633)
Q Consensus       137 LatG  140 (633)
                      |++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.37  E-value=7  Score=38.09  Aligned_cols=124  Identities=9%  Similarity=0.051  Sum_probs=73.8

Q ss_pred             CCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeC---------------CCeEEEEECCCCCceeE
Q 006743           15 SGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---------------DGTLHLWDTTGRSPKVS   75 (633)
Q Consensus        15 DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~---------------DGtI~IWDl~t~~~~v~   75 (633)
                      ..+|.+|++....    .+..+........++|.+..++. +++|-..               -+...+|.....+  ..
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~--~~  199 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VR  199 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC--EE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc--eE
Confidence            4467777764332    22334444445577888888886 6666211               1234455554444  23


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcee---eEeeCCCCeEEEEEecC-CCEEEEEE
Q 006743           76 WLKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRRPS---SCITYEAPFSSLAFIDD-DWILTAGT  141 (633)
Q Consensus        76 ~l~~H~~~VtsLafSPdg~~LaSg-S~DGtVrIWDlrtgk~v---~~i~h~~~ItsLafSPd-G~~LatGs  141 (633)
                      .+...-...+.|+++||+++|+++ ...+.|++|++......   ..+...+.+-.+.+.++ |.+.+.+.
T Consensus       200 ~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         200 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            333344668999999998876655 56678999998754322   22345666788888864 55544443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.94  E-value=6  Score=38.68  Aligned_cols=137  Identities=12%  Similarity=0.115  Sum_probs=92.3

Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEE
Q 006743           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA  139 (633)
Q Consensus        60 GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~Lat  139 (633)
                      .+|.|-|+.......+.-..    .-+.-.+|..+.|+.-+ ..++.++|+++.+.+..+.....|.--.|-.+ +.|+.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~l  118 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVAL  118 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEEEE
T ss_pred             ceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEEEE
Confidence            47888888765543332222    22344678888888777 55899999999999988888888877788754 45555


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecCC--CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          140 GTSNGRVVFYDIRGKPQPLTVLRACSS--SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       140 Gs~DGsV~IWDlrs~~k~v~~l~~~~H--~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .+. ..|+-|++.....|.+.+.....  ...|..-..+++.++++..+-......+     .|.+.+|-+
T Consensus       119 VT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i-----~G~mQLYS~  183 (327)
T d1utca2         119 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV-----VGAMQLYSV  183 (327)
T ss_dssp             ECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEE-----EEEEEEEET
T ss_pred             EcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCce-----eEEEEEEEe
Confidence            543 56999999877778888874321  3557777788888887654322222221     356677754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.80  E-value=4.5  Score=42.65  Aligned_cols=112  Identities=13%  Similarity=0.058  Sum_probs=64.9

Q ss_pred             EEEE-EECCCcEEEEEC-CCCceeEEEeCCCC----------CcEEEEEEccCC---CeEEEEEeCCCeEEEEECCCCCc
Q 006743            8 HLAS-ISLSGDLILHNL-ASGAKAAELKDPNE----------QVLRVLDYSRNS---RHLLVTAGDDGTLHLWDTTGRSP   72 (633)
Q Consensus         8 ~LaS-gs~DG~I~IWDl-~tgk~v~~~~~~~~----------~~VssLafSpdg---~~lLaSGs~DGtI~IWDl~t~~~   72 (633)
                      .|++ .+.++.|...|. ++|+.+-++.....          ...+.+++.++.   ..+++.+..|+.|.-.|.++++.
T Consensus        64 ~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~  143 (596)
T d1w6sa_          64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (596)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCce
Confidence            4444 445688888887 57998877642111          111334443332   23688889999999999999884


Q ss_pred             eeEEeccCCCCeEEEEEcC--CCCEEEEEeC------CCeEEEEeCCCCceeeEe
Q 006743           73 KVSWLKQHSAPTAGISFSS--DDKIIASVGL------DKKLYTYDPGSRRPSSCI  119 (633)
Q Consensus        73 ~v~~l~~H~~~VtsLafSP--dg~~LaSgS~------DGtVrIWDlrtgk~v~~i  119 (633)
                      .-..-......-..+.-.|  .+..++++..      .|.|+-+|+++|+.+-.+
T Consensus       144 ~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         144 VWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             eccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            3222111100000111122  2455666543      489999999999987654

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.33  E-value=18  Score=34.85  Aligned_cols=196  Identities=9%  Similarity=0.103  Sum_probs=110.5

Q ss_pred             CCCCEEEEEECCCcEEEEECCC----CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE---ECCCCC-----
Q 006743            4 CKDEHLASISLSGDLILHNLAS----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW---DTTGRS-----   71 (633)
Q Consensus         4 pdG~~LaSgs~DG~I~IWDl~t----gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW---Dl~t~~-----   71 (633)
                      ++...+++.+.+|-|+--.+.+    +..-..++  ..+.+..+......+ .|+.-+..|.++.-   ++....     
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k--~~D~v~~~~~~~t~d-~ll~fT~~Grvy~l~v~eiP~~~~~s~G   79 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK--DTDRLLAMLEMNTKD-VLLLFTNKGNYLYCPVHELPDIRWKDLG   79 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC--TTCCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc--CCceEEEEEEEcCCC-EEEEEecCCEEEEEeeccCccccccccc
Confidence            5677889999999998665432    11111122  344444443333434 35555677876554   443221     


Q ss_pred             -ceeEEec-cCCCCe-EEEEEcC--CCCEEEEEeCCCeEEEEeCCCC------cee--eEeeCCCCeEEEEEecCCCEEE
Q 006743           72 -PKVSWLK-QHSAPT-AGISFSS--DDKIIASVGLDKKLYTYDPGSR------RPS--SCITYEAPFSSLAFIDDDWILT  138 (633)
Q Consensus        72 -~~v~~l~-~H~~~V-tsLafSP--dg~~LaSgS~DGtVrIWDlrtg------k~v--~~i~h~~~ItsLafSPdG~~La  138 (633)
                       +....+. .....| ..+...+  ...+|+..+..|.++..++..-      +..  ..+.....+..+....+...++
T Consensus        80 ~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~  159 (323)
T d1wp5a_          80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF  159 (323)
T ss_dssp             EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred             ccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEE
Confidence             1111111 123334 3444443  4678999999999999986421      112  2234566777888887788999


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (633)
Q Consensus       139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl  208 (633)
                      .++..|.+..|+...-.    ...  .-...|..+.+.++...+....-..++..++..+..|..+.-.+
T Consensus       160 l~t~~G~~lrf~~~~vr----~~g--r~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~  223 (323)
T d1wp5a_         160 LVTHNGYALWFDESEVS----IVG--VRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKL  223 (323)
T ss_dssp             EEETTSEEEEEEGGGSC----BCC--SSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred             EEEecceeeEeeccccc----ccC--cccccccccccccccccchhhhccccccceeeeeeeheeecccc
Confidence            99999999999876531    111  12355777777665555433222334444555555666555433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.28  E-value=24  Score=34.96  Aligned_cols=167  Identities=8%  Similarity=-0.028  Sum_probs=98.5

Q ss_pred             cCCCCEEEEEECCCcEEEEECCC-----------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 006743            3 NCKDEHLASISLSGDLILHNLAS-----------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS   71 (633)
Q Consensus         3 SpdG~~LaSgs~DG~I~IWDl~t-----------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~   71 (633)
                      +....++++|+.++ ++|..+.+           .........   ..|..++|+.+   .|+. ..++.+..++...-.
T Consensus        45 sn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i---p~v~~vafs~d---~l~v-~~~~~l~~~~~~~l~  116 (381)
T d1xipa_          45 SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI---PDVIFVCFHGD---QVLV-STRNALYSLDLEELS  116 (381)
T ss_dssp             ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC---TTEEEEEEETT---EEEE-EESSEEEEEESSSTT
T ss_pred             eCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC---CCeEEEEeeCC---EEEE-EeCCCEEEEEeeccc
Confidence            33445677777664 66665421           111122221   24667888744   3444 345678888886644


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe------eCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI------TYEAPFSSLAFIDDDWILTAGTSNGR  145 (633)
Q Consensus        72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i------~h~~~ItsLafSPdG~~LatGs~DGs  145 (633)
                      . ......-..++..+.++|  ..++....++.+.++++..++.....      ...+.+.+++|++.|+.++++..++ 
T Consensus       117 ~-~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-  192 (381)
T d1xipa_         117 E-FRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-  192 (381)
T ss_dssp             C-EEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-
T ss_pred             c-ccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-
Confidence            2 233333456788888876  46777888999999999887643322      2457788899998888888874432 


Q ss_pred             EEEE-ECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEEe
Q 006743          146 VVFY-DIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFIDE  185 (633)
Q Consensus       146 V~IW-Dlrs~~k~v~~l~~-~~H~~~VtsLafsPdg~~Las~  185 (633)
                      +.+- ++....    .+.. ......|.+|.|-.+..+++..
T Consensus       193 ~q~k~~i~~~~----~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         193 MEKQFEFSLPS----ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEEECCCH----HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eeeccCCCCcc----ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            2221 222110    0110 1234568899998877777654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.83  E-value=18  Score=36.31  Aligned_cols=101  Identities=11%  Similarity=0.206  Sum_probs=55.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEEe-------CCCCCcEEEEEEccC---CCeEEEEEeC------C----C
Q 006743            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK-------DPNEQVLRVLDYSRN---SRHLLVTAGD------D----G   60 (633)
Q Consensus         1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~-------~~~~~~VssLafSpd---g~~lLaSGs~------D----G   60 (633)
                      +|.|||++|++--.+|.|++++..+++......       ......+..|+|+|+   ...+.++-..      +    .
T Consensus        33 a~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~  112 (450)
T d1crua_          33 LWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPN  112 (450)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCE
T ss_pred             EEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCccccccc
Confidence            478999988766557999999987765433221       111245667999985   2323332210      1    1


Q ss_pred             e--EEEEECCCCCce-------eEEe-ccCCCCeEEEEEcCCCCEEEEEeC
Q 006743           61 T--LHLWDTTGRSPK-------VSWL-KQHSAPTAGISFSSDDKIIASVGL  101 (633)
Q Consensus        61 t--I~IWDl~t~~~~-------v~~l-~~H~~~VtsLafSPdg~~LaSgS~  101 (633)
                      .  |..+........       +..+ ........+|.|.||+.++++.+.
T Consensus       113 ~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         113 QTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1  333333222211       1111 122234678999999988887764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.25  E-value=20  Score=35.97  Aligned_cols=65  Identities=12%  Similarity=0.149  Sum_probs=45.7

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEecC---CCEEEE
Q 006743           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDD---DWILTA  139 (633)
Q Consensus        75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSPd---G~~Lat  139 (633)
                      ..+...-...++|+|.|++++|++--.+|.|++++..++.......         .+.....|+++|+   +.+|..
T Consensus        20 ~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          20 KVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            3333344567899999999988877668999999988776543321         2356789999995   444444