Citrus Sinensis ID: 006745

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MVLSLKKYLILSLKVFDSKPQKGSRRSASMRDFKVDSTPETDSKFDTTPGTDSKVGSNPEKDSKGREKPISDWKANENGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIAKAHNLEDTPESSERVCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKPDDGDGVGVVPQDSQICDSMLNDPIPVQRAISEEASEAIADLGKSRESGEPSNIPENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAVKDISDPGAANKPRILNQ
ccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHccccccccccccEEcccccccccccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHccccccccccEEEEEcccccEEEEEHHHHHcccccccccccccccEEEccccccccHHHHHccccHHHHHHcccccccccccccccHHccccccccccccccccEEEcccccccccccccccEEEEccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcHHHHHHHHHHHccccEEEEEEcccEEEEcccccccccccccccEEEccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccHHHEEEEEEEEccccccccccEEEEcccEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccHHcccccccEEHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccEEEcccccccccccHHHHHHHHHccccEEEEcHHHccccccccHHHHHHHHHHcccccccccccEEEEEccccEEEEEcHHHHHccccccccccccccEEEEcccccccHHHHHHccHHHHHHHHccccccccccccccEEEEEEcccccccccccccEEEEEccccHccccccccEEEEcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHcccccccccccccHccccccccccHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEEcccccHHHccHHHHHHHHHcccHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
MVLSLKKYLILSLKvfdskpqkgsrrsasmrdfkvdstpetdskfdttpgtdskvgsnpekdskgrekpisdwkanengsilcpsielggcgnvlelrCTFDENWVAELLRKAEEIAKahnledtpesservctcynplgeidmtNSELIKAasredstdnylynpaakdirhgdlkhfqwhwakgepviVSNVLEnalglswdpmVMWRACRQisntkhrlyldvkaidcldwcegevnIHQFfkgytdgrfdkeswpqilklkdwppsnlfeerlprhnveflgclpfkeythpcagalniatklpkkslkpdmgpktyIAYGVAQelgradsvtklhCDMSDAVNvlthttdvklkpeHLAKIEKLKQQHKAQDQMeffgcsqfsdenshanssaipvkneqcggkpddgdgvgvvpqdsqicdsmlndpipvqRAISEEASEAIADLgksresgepsnipenefesadggavwdIFRRQDISKLQDYLKKHFRefrhihccpvqqvihpihDQVFYLSSEHKAKLkqeygiepWTFIQKLGeavfvpagcphqvRNLKSCIKAALdfvspenvsQCVRLteefrllppnhrakedKLEVKKMILYAVSQAVkdisdpgaankprilnq
MVLSLKKYLILSlkvfdskpqkgsrrsasmrdfkvdstpetdskfdttpgtdskvgsnpekdskgrekpisdwkanenGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIAKahnledtpesserVCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIAtklpkkslkpdmGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKPDDGDGVGVVPQDSQICDSMLNDPIPVQRAISEEASEAIADLgksresgepsnipenefesadggaVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLteefrllppnhrakedkleVKKMILYAVSQavkdisdpgaankprilnq
MVlslkkylilslkVFDSKPQKGSRRSASMRDFKVDSTPETDSKFDTTPGTDSKVGSNPEKDSKGREKPISDWKANENGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIAKAHNLEDTPESSERVCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKPddgdgvgvvPQDSQICDSMLNDPIPVQRaiseeaseaiaDLGKSRESGEPSNIPENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAVKDISDPGAANKPRILNQ
****LKKYLILSLKVF*************************************************************NGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIA*************RVCTCYNPLGEIDMTNSELI*********DNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPK******MGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVKLKP****************************************************************************************************************GGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPP*******KLEVKKMILYAVSQAV*****************
***S*KKYLILSL**********************************************************DWKANENGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIAKAHNLEDTPESSERVC********************SREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQI********LDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVK*******************************************************************************************************************GGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAV*****************
MVLSLKKYLILSLKVFD***************************************************PISDWKANENGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIAKAH***********VCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEK********DQMEFFGCSQF*********SAIPVKNEQCGGKPDDGDGVGVVPQDSQICDSMLNDPIPVQRAISEEASEA****************PENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAVKDISDPGAANKPRILNQ
*VLSLKKYLILSLKVFDSKPQKGSRRSASMRDFKVDS******KFD*********************KPISDWKANENGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIAKAHNLEDT***SERVCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAI*********************Q*****DSMLNDPIPVQRAISEE************ESGEPSNIPENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAVKDISD************
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MVLSLKKYLILSLKVFDSKPQKGSRRSASMRDFKVDSTPETDSKFDTTPGTDSKVGSNPEKDSKGREKPISDWKANENGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIAKAHNLEDTPESSERVCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKPDDGDGVGVVPQDSQICDSMLNDPIPVQRAISEEASEAIADLGKSRESGEPSNIPENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAVKDISDPGAANKPRILNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query632 2.2.26 [Sep-21-2011]
Q5ZIX81325 Lysine-specific demethyla yes no 0.218 0.104 0.492 3e-31
Q6PCM11323 Lysine-specific demethyla yes no 0.218 0.104 0.485 9e-31
Q7LBC61761 Lysine-specific demethyla yes no 0.223 0.080 0.475 9e-31
Q9Y4C11321 Lysine-specific demethyla no no 0.218 0.104 0.485 9e-31
Q6IRB81331 Lysine-specific demethyla N/A no 0.218 0.103 0.485 1e-30
Q636791214 Lysine-specific demethyla yes no 0.218 0.113 0.485 2e-30
Q6ZPY71562 Lysine-specific demethyla no no 0.223 0.090 0.475 4e-30
Q5HZN11334 Lysine-specific demethyla N/A no 0.218 0.103 0.478 6e-30
Q69ZK62350 Probable JmjC domain-cont no no 0.221 0.059 0.379 2e-22
Q156522540 Probable JmjC domain-cont no no 0.221 0.055 0.379 3e-22
>sp|Q5ZIX8|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1 Back     alignment and function desciption
 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 91/142 (64%), Gaps = 4/142 (2%)

Query: 474  GAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEY 533
            GA+W I+  +D  K++++LKK   E    +  PV     PIHDQ +YL    + +L QEY
Sbjct: 1175 GALWHIYAAKDTEKIREFLKKVAEEQGQEN--PVDH--DPIHDQSWYLDRSLRKRLHQEY 1230

Query: 534  GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPN 593
            G++ W  +Q LG+ VF+PAG PHQV NL SCIK A DFVSPE+V  C  LT+EFR L   
Sbjct: 1231 GVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHT 1290

Query: 594  HRAKEDKLEVKKMILYAVSQAV 615
            H   EDKL+VK +I +AV  AV
Sbjct: 1291 HTNHEDKLQVKNVIYHAVKDAV 1312
Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Preferentially demethylates mono- and dimethylated H3 'Lys-9' residue, with a preference for dimethylated residue, while it has weak or no activity on trimethylated H3 'Lys-9'. Demethylation of Lys residue generates formaldehyde and succinate.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q6PCM1|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1 Back     alignment and function description
>sp|Q7LBC6|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2 Back     alignment and function description
>sp|Q9Y4C1|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4 Back     alignment and function description
>sp|Q6IRB8|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2 SV=1 Back     alignment and function description
>sp|Q63679|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1 Back     alignment and function description
>sp|Q6ZPY7|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2 Back     alignment and function description
>sp|Q5HZN1|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2 SV=1 Back     alignment and function description
>sp|Q69ZK6|JHD2C_MOUSE Probable JmjC domain-containing histone demethylation protein 2C OS=Mus musculus GN=Jmjd1c PE=1 SV=3 Back     alignment and function description
>sp|Q15652|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
255558761 1099 conserved hypothetical protein [Ricinus 0.811 0.466 0.590 0.0
356534442 1222 PREDICTED: uncharacterized protein LOC10 0.844 0.436 0.562 0.0
356573855 840 PREDICTED: lysine-specific demethylase 3 0.768 0.578 0.569 1e-176
358345310 989 Lysine-specific demethylase 3B [Medicago 0.789 0.504 0.521 1e-164
115449999 995 Os02g0828900 [Oryza sativa Japonica Grou 0.865 0.549 0.499 1e-158
222623969 996 hypothetical protein OsJ_08976 [Oryza sa 0.865 0.549 0.499 1e-158
218191866 996 hypothetical protein OsI_09545 [Oryza sa 0.865 0.549 0.495 1e-158
357153247 1108 PREDICTED: uncharacterized protein LOC10 0.846 0.482 0.505 1e-158
48716323 868 putative DNA-binding protein PD3, chloro 0.900 0.655 0.486 1e-157
242038913 990 hypothetical protein SORBIDRAFT_01g01521 0.844 0.539 0.507 1e-157
>gi|255558761|ref|XP_002520404.1| conserved hypothetical protein [Ricinus communis] gi|223540389|gb|EEF41959.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/562 (59%), Positives = 402/562 (71%), Gaps = 49/562 (8%)

Query: 73   WKANENGSILCPSIELGGCGNVLELRCTFDENWVAELLRKAEEIAKAHNLEDTPESSERV 132
            WKANE+GSI+C      G GN LEL+C F ENWV++LL+KAE++A+ + L D  +     
Sbjct: 546  WKANEDGSIVCRC----GFGN-LELKCLFPENWVSDLLKKAEDVARGYEL-DMLKMPLVR 599

Query: 133  CTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVS 192
            C C+N +G +D+ NS L+KAASREDS DN+LY P A+DI+  DL+HFQ+HW + EPVIVS
Sbjct: 600  CACFNSIGNVDVGNSHLLKAASREDSDDNFLYYPRARDIKDVDLEHFQYHWMRAEPVIVS 659

Query: 193  NVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGR 252
            NVLE A GLSW+PMVMWRA RQI N KH   LDVKAI+CLDWCE ++N+ QFF GY +GR
Sbjct: 660  NVLETATGLSWEPMVMWRAFRQIKNEKHDTLLDVKAIECLDWCEVDINVRQFFTGYVEGR 719

Query: 253  FDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSL 312
            FD+E WPQILKLKDWPPS +F+ERL RH  EF  CLPFKEYTHP  G LN+A +LPKKSL
Sbjct: 720  FDQEGWPQILKLKDWPPSTMFDERLRRHGAEFTCCLPFKEYTHPENGPLNLAVRLPKKSL 779

Query: 313  KPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQ 372
            KPDMGPKTYIAYG  +ELGR DSVTKLHCDMSDAVNVLTHT +V ++P  LAKIE+LK++
Sbjct: 780  KPDMGPKTYIAYGYIEELGRGDSVTKLHCDMSDAVNVLTHTAEVSIEPTILAKIEELKER 839

Query: 373  HKAQDQMEFFGCSQFSDENSHA-----------------------------NSSAIPVKN 403
            H+ QD  E +   Q ++E+                                + S+ P+K+
Sbjct: 840  HRKQDLRELYDNKQVTEEDVSGQMQSGFCCNLLRTDKDFGEVDNQIKDCQFDDSSFPMKS 899

Query: 404  EQCGGKPDDGDGVGVVPQDSQICDSMLNDPIPVQRAISEEA---SEAIADLGKSRESGEP 460
            E   GK           Q  Q      ND   +  A SE++   S    D  +   S  P
Sbjct: 900  EMKSGK-----------QAEQFRVDGSNDDCYLTNAFSEKSELKSREADDQSQCCTSCGP 948

Query: 461  SNIPENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFY 520
            SN      +  +GGAVWDIFRRQD+ KLQ+YLK+HF+EFRHIHCCP+Q+V+HPIHDQ FY
Sbjct: 949  SNCGYEMEKPDEGGAVWDIFRRQDVPKLQEYLKEHFKEFRHIHCCPLQKVVHPIHDQTFY 1008

Query: 521  LSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQC 580
            L+ EHK KLK+E+GIEPWTF+QKLG+AVF+PAGCPHQVRNLKSCIK ALDFVSPENV +C
Sbjct: 1009 LTLEHKRKLKEEFGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGEC 1068

Query: 581  VRLTEEFRLLPPNHRAKEDKLE 602
            +RLTEEFRLLPPNHRAKEDKLE
Sbjct: 1069 IRLTEEFRLLPPNHRAKEDKLE 1090

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356534442|ref|XP_003535763.1| PREDICTED: uncharacterized protein LOC100805723 [Glycine max] Back     alignment and taxonomy information
>gi|356573855|ref|XP_003555071.1| PREDICTED: lysine-specific demethylase 3B-like [Glycine max] Back     alignment and taxonomy information
>gi|358345310|ref|XP_003636724.1| Lysine-specific demethylase 3B [Medicago truncatula] gi|355502659|gb|AES83862.1| Lysine-specific demethylase 3B [Medicago truncatula] Back     alignment and taxonomy information
>gi|115449999|ref|NP_001048603.1| Os02g0828900 [Oryza sativa Japonica Group] gi|48716322|dbj|BAD22934.1| putative DNA-binding protein PD3, chloroplast [Oryza sativa Japonica Group] gi|48716465|dbj|BAD23072.1| putative DNA-binding protein PD3, chloroplast [Oryza sativa Japonica Group] gi|113538134|dbj|BAF10517.1| Os02g0828900 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222623969|gb|EEE58101.1| hypothetical protein OsJ_08976 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218191866|gb|EEC74293.1| hypothetical protein OsI_09545 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|357153247|ref|XP_003576388.1| PREDICTED: uncharacterized protein LOC100822574 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|48716323|dbj|BAD22935.1| putative DNA-binding protein PD3, chloroplast [Oryza sativa Japonica Group] gi|48716466|dbj|BAD23073.1| putative DNA-binding protein PD3, chloroplast [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242038913|ref|XP_002466851.1| hypothetical protein SORBIDRAFT_01g015210 [Sorghum bicolor] gi|241920705|gb|EER93849.1| hypothetical protein SORBIDRAFT_01g015210 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
TAIR|locus:2008875875 AT1G11950 "AT1G11950" [Arabido 0.563 0.406 0.482 3.8e-144
TAIR|locus:2027109883 AT1G62310 "AT1G62310" [Arabido 0.514 0.368 0.501 1.8e-142
TAIR|locus:2125221840 AT4G00990 "AT4G00990" [Arabido 0.893 0.672 0.461 1.7e-137
TAIR|locus:2036014944 AT1G09060 "AT1G09060" [Arabido 0.427 0.286 0.402 2.9e-87
TAIR|locus:2141221927 B160 "AT4G21430" [Arabidopsis 0.484 0.330 0.331 1.2e-81
UNIPROTKB|E1BFC21320 KDM3A "Uncharacterized protein 0.251 0.120 0.442 9.9e-52
UNIPROTKB|E2QWU91322 KDM3A "Uncharacterized protein 0.251 0.120 0.442 1.4e-50
UNIPROTKB|F1SVC81323 KDM3A "Uncharacterized protein 0.251 0.120 0.442 5.2e-49
UNIPROTKB|F1RH751766 KDM3B "Uncharacterized protein 0.251 0.090 0.430 1.6e-48
UNIPROTKB|Q5ZIX81325 KDM3A "Lysine-specific demethy 0.251 0.12 0.454 2.2e-48
TAIR|locus:2008875 AT1G11950 "AT1G11950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 841 (301.1 bits), Expect = 3.8e-144, Sum P(2) = 3.8e-144
 Identities = 182/377 (48%), Positives = 237/377 (62%)

Query:    39 PETDSKFDTTPGTDSKVG--SNPEKDSKGREK---PISDWKANENGSILCPSIELGGCGN 93
             PE   +F+   GT    G  + P   S   ++   P   W A+ENGSI C   ELGGCG+
Sbjct:   360 PECQLQFEYR-GTRYIHGEAAEPSSSSVSEDETKTPSIKWNADENGSIRCAPKELGGCGD 418

Query:    94 -VLELRCTFDENWVAELLRKAEEIAKAHNLEDTPESSERVCTCYNPLGEIDMTNSELIKA 152
              VLEL+      W+++L +KAE    +++++  P  S   C C +     DM++ +  KA
Sbjct:   419 SVLELKRILPVTWMSDLEQKAETFLASYSIK--PPMS--YCRCSS-----DMSSMKR-KA 468

Query:   153 ASREDSTDNYLYNPAAKDI-RHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRA 211
             ASR+ S+DNYLY+P + D+ +  +L HFQ HW+KGEPVIV N L N  GLSW+PMVMWRA
Sbjct:   469 ASRDGSSDNYLYSPDSLDVLKQEELLHFQEHWSKGEPVIVRNALNNTAGLSWEPMVMWRA 528

Query:   212 -CRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPS 270
              C  + +       DVKAIDCL  CE ++N   FF+GY+ GR  +  WP++LKLKDWPPS
Sbjct:   529 LCENVDSAISSNMSDVKAIDCLANCEVKINTLCFFEGYSKGRTYENFWPEMLKLKDWPPS 588

Query:   271 NLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQEL 330
             + FE  LPRH  EF+  LPF+EY+ P +G LNIATKLP+  LKPD+GPKTY+AYG + EL
Sbjct:   589 DKFENLLPRHCDEFISALPFQEYSDPRSGILNIATKLPEGLLKPDLGPKTYVAYGTSDEL 648

Query:   331 GRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDE 390
             GR DSVTKLHCDMSDAVN+L HT +V L  E  + I  LKQ+HK Q++ E     Q   E
Sbjct:   649 GRGDSVTKLHCDMSDAVNILMHTAEVTLSEEQRSAIADLKQKHKQQNEKELQ--EQNGLE 706

Query:   391 NSHANSSAIPVKNEQCG 407
                  S  I V +E  G
Sbjct:   707 EEEVVSDEIVVYDETSG 723
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2027109 AT1G62310 "AT1G62310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125221 AT4G00990 "AT4G00990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036014 AT1G09060 "AT1G09060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141221 B160 "AT4G21430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFC2 KDM3A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWU9 KDM3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SVC8 KDM3A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RH75 KDM3B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIX8 KDM3A "Lysine-specific demethylase 3A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 6e-13
smart0055858 smart00558, JmjC, A domain family that is part of 1e-06
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 473 GGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQE 532
               +  F    +  +         E              P    + +L++    K   E
Sbjct: 21  YSINYLHFGGPKVWYIIPSEYAEKFE---KVLSKHNGGEQPDL--LLHLNTIISPKQLLE 75

Query: 533 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDF 571
            GI  + F+QK GE VF   G  HQV NL   I  A++F
Sbjct: 76  NGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
KOG1356889 consensus Putative transcription factor 5qNCA, con 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.54
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 99.0
smart0055857 JmjC A domain family that is part of the cupin met 96.98
KOG2131427 consensus Uncharacterized conserved protein, conta 96.02
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 93.82
COG1917131 Uncharacterized conserved protein, contains double 93.39
KOG2130407 consensus Phosphatidylserine-specific receptor Ptd 92.48
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 90.81
TIGR03214260 ura-cupin putative allantoin catabolism protein. T 89.39
PRK09943185 DNA-binding transcriptional repressor PuuR; Provis 83.64
COG4101142 Predicted mannose-6-phosphate isomerase [Carbohydr 81.76
TIGR00218302 manA mannose-6-phosphate isomerase, class I. The n 81.21
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-158  Score=1308.93  Aligned_cols=479  Identities=42%  Similarity=0.660  Sum_probs=425.4

Q ss_pred             cccCCCccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCCCCCC-ceeccccCCchhHHHHHHHH
Q 006745           35 VDSTPETDSKFDTTPGTDSKVGSNPEKDSKGREKPISDWKANENGSILCPSIELGGCGN-VLELRCTFDENWVAELLRKA  113 (632)
Q Consensus        35 ~~~~~~~~~g~~y~~g~~~~~~~~~~~~~~~~~~~~~~W~a~~dGsI~Cpp~e~ggCg~-~L~L~~if~~~wi~~L~~~a  113 (632)
                      ...+.|.+||.+|+||-++...++.   +.....+.+   +|++|+|.|-|...+||+. .|+|+|++|..|.+.|+.+|
T Consensus       404 e~~~~~~~r~~~~~~g~~~~~~~~~---s~~~~~~~~---~~~ng~~r~l~~~~~g~~~~~l~lkr~lpn~~~s~i~~~v  477 (889)
T KOG1356|consen  404 ECELMLRSRGVKYEHGPDPIEPSLS---SVSVDEPSS---ANENGSLRDLLLSLAGCLDRGLKLKRILPNILDSIIASVV  477 (889)
T ss_pred             hHHHHHHHHHHHhhcCccccccccC---CCCCCCCcc---cccccchhhcccccCccchhhhhhhhcCchHHHHHHHHHH
Confidence            3447799999999999876553333   222222222   9999999999999999999 99999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCcccccCCCCCCccCCchhhhhhhcCCCCCCCceecCCCCCcCCCChHHHHHHHhcCCCEEEEe
Q 006745          114 EEIAKAHNLEDTPESSERVCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSN  193 (632)
Q Consensus       114 ee~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~r~aA~Re~s~dn~lycP~~~d~~~~~l~hFQ~hW~kGePVIVr~  193 (632)
                      |.-+..+-..-    ....|.      ..+...+.++++|.|+.+.|||||||.+.+.+.+|+.|||+||++||||||||
T Consensus       478 E~k~~~~~~~~----~l~~~~------~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhWkqGqPViVs~  547 (889)
T KOG1356|consen  478 ENKLTSKLSKP----PLRLCR------SSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHWKQGQPVIVSG  547 (889)
T ss_pred             HhhcccccCCc----hhhcCc------cccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHHhcCCcEEehH
Confidence            99888743333    233332      12346778899999999999999999998888899999999999999999999


Q ss_pred             ccccccCCCCChhHHHHHHHHhhccc-cccccceeeeecCCCceeecchhhhhccccCCccCCCCCcceeecCCCCChhh
Q 006745          194 VLENALGLSWDPMVMWRACRQISNTK-HRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNL  272 (632)
Q Consensus       194 Vl~~~s~lsWeP~~mwra~~e~~~~~-~~~~~~vkaiDCld~~evei~i~qFf~Gy~~gr~~~~~wp~mLKLKDWPps~~  272 (632)
                      |++++++++|+||+|||+|+++.+.. +..+.++.++||++      ++.+||.||++|+++++|||+|||||||||+++
T Consensus       548 V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLKDWpp~~~  621 (889)
T KOG1356|consen  548 VHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLKDWPPGED  621 (889)
T ss_pred             hhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEEeecCCCchHh
Confidence            99999999999999999999987666 56667788888888      789999999999999999999999999999999


Q ss_pred             HHHhcchhhHHhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeeccccccccCCCCCcccccccccchhhhhhc
Q 006745          273 FEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTH  352 (632)
Q Consensus       273 F~e~LP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eElGrGDSvTkLH~DmSDAVNIL~h  352 (632)
                      |+++||+||+|||++|||||||| |.|.||||++||.++++||||||||||||+++|+||||||||||||||||||||||
T Consensus       622 Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILvy  700 (889)
T KOG1356|consen  622 FKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILVY  700 (889)
T ss_pred             HhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhhhhhheee
Confidence            99999999999999999999999 89999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCChhHHHHHHHHHHHHHhhhhhhhhcCCCCCcccccCCCCCCccccccCCCCCCCCCCCcccCCCcccccCCCCC
Q 006745          353 TTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKPDDGDGVGVVPQDSQICDSMLND  432 (632)
Q Consensus       353 taev~~~~~~~~~i~kLk~~~~~qd~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~  432 (632)
                      |++++.   +...|+++++++.++++.|....                                                
T Consensus       701 v~e~~~---~~~~~~~~~k~~~~~~~de~~~~------------------------------------------------  729 (889)
T KOG1356|consen  701 VGEPPG---QIEQIAKVLKKIQEGDLDEITRS------------------------------------------------  729 (889)
T ss_pred             eccCCc---hHHhHHHHHHhhhhcchhhhhhh------------------------------------------------
Confidence            999876   44556666666554443222111                                                


Q ss_pred             CccccchhhhhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCcceeeeecCCChHHHHHHHHHHHHhhcccccCCCCcccC
Q 006745          433 PIPVQRAISEEASEAIADLGKSRESGEPSNIPENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIH  512 (632)
Q Consensus       433 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Efrh~~~~pv~~v~d  512 (632)
                                                   .   ..+..+.+|||||||||||||||||||+||++||+|    ++.+++|
T Consensus       730 -----------------------------~---~~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~----~~~~v~h  773 (889)
T KOG1356|consen  730 -----------------------------R---ISSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGH----EVPKVHH  773 (889)
T ss_pred             -----------------------------h---ccccccCCcchhhhhhhcchHHHHHHHHHhhHHhcC----CCCcccC
Confidence                                         0   001237899999999999999999999999999998    7899999


Q ss_pred             CccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccchhhhhhhcccCccchHHHHHHHHHhhcCCC
Q 006745          513 PIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPP  592 (632)
Q Consensus       513 PIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~  592 (632)
                      |||||+||||++||+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.||+|||+|||+||+
T Consensus       774 PIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~  853 (889)
T KOG1356|consen  774 PIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQ  853 (889)
T ss_pred             CCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccchhhHhHHHHHHHHHHHHHhCCCCC
Q 006745          593 NHRAKEDKLEVKKMILYAVSQAVKDISDPGA  623 (632)
Q Consensus       593 ~H~akEDKLeVkkm~l~A~~~Av~~l~~~~~  623 (632)
                      +|.+||||||||||+||||++||++|+...+
T Consensus       854 ~h~~~eDKLqvK~mi~hAVk~Av~~L~~~~s  884 (889)
T KOG1356|consen  854 NHKNHEDKLQVKNMIYHAVKDAVGTLKEAES  884 (889)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999997654

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03214 ura-cupin putative allantoin catabolism protein Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00218 manA mannose-6-phosphate isomerase, class I Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
2ypd_A392 Crystal Structure Of The Jumonji Domain Of Human Ju 6e-23
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 474 GAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEY 533
           GA+W I+  +D+ K++++L+K  +E + +   P      PI DQ +Y++ + + +L +EY
Sbjct: 233 GALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNKKLRQRLLEEY 288
Query: 534 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPN 593
           G+   T IQ LG+A+ +PAG  HQV+N  SCI+   DFVSPE++ +   LT+E RLL   
Sbjct: 289 GVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLLKEE 348
Query: 594 HRAKEDKLEVKKMILYAVSQAVKDI 618
               +DKL+VK ++ +AV + V+ +
Sbjct: 349 INY-DDKLQVKNILYHAVKEMVRAL 372

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 3e-06
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 7e-06
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 6e-05
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 7e-05
3kv9_A397 JMJC domain-containing histone demethylation prote 1e-04
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 3e-04
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 5e-04
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 66/480 (13%), Positives = 135/480 (28%), Gaps = 160/480 (33%)

Query: 2   VLSLKKYLILSLKVFDSKPQKGSRRSASMRDFKVDSTPETDSKF----------DTTPGT 51
           ++  K  +  +L++F +   K       ++ F V+     + KF            +  T
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEE---MVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 52  D------SKVGSNPEKDSKG---REKPISDWKANENGSILCPSIEL-----GGCG-NVL- 95
                   ++ ++ +  +K    R +P    K  +    L P+  +      G G   + 
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 96  -------ELRCTFDEN--WVAELLRKAEEIAKAHNLEDTPESSERVCTCYNPLGEIDMTN 146
                  +++C  D    W+         +   ++ E   E  +++    +P        
Sbjct: 168 LDVCLSYKVQCKMDFKIFWL--------NLKNCNSPETVLEMLQKLLYQIDP-------- 211

Query: 147 SELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSNVLENALGLSWDPM 206
                  SR D + N         I+    +  +    +   +++ NV         +  
Sbjct: 212 ----NWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYENCLLVLLNV--------QNAK 257

Query: 207 VMWRA----CRQISNTKHRLYLDVKAIDCLD-WCEGEVNIHQFFKGYTDGRFDKES---- 257
             W A    C+ +  T+       +  D L       +++       T      E     
Sbjct: 258 A-WNAFNLSCKILLTTR-----FKQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLL 307

Query: 258 --W---------PQILK------------LKDWPP-----SNLFEERLPRHNVEFLGCLP 289
             +          ++L             ++D         ++  ++L       L  L 
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 290 FKEYTH--------------PCAGAL-------------NIATKLPKKSL-KPDMGPKTY 321
             EY                P    L              +  KL K SL +      T 
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 322 IAYGVAQEL-GRADSVTKLHCDMSDAVNVL-THTTDVKLKPE-----------HLAKIEK 368
               +  EL  + ++   LH  + D  N+  T  +D  + P            HL  IE 
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371 Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397 Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392 Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145 Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Length = 116 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
2ypd_A392 Probable JMJC domain-containing histone demethyla 100.0
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 99.25
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 99.13
2yu1_A451 JMJC domain-containing histone demethylation PROT; 98.95
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 98.92
3kv5_D488 JMJC domain-containing histone demethylation prote 98.87
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 98.87
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 98.85
3kv9_A397 JMJC domain-containing histone demethylation prote 98.8
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 98.76
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 98.74
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 97.62
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 97.54
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 97.45
4ask_A 510 Lysine-specific demethylase 6B; oxidoreductase, KD 96.77
3dxt_A354 JMJC domain-containing histone demethylation PROT; 96.02
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 95.41
3opt_A373 DNA damage-responsive transcriptional repressor R; 95.01
2ox0_A381 JMJC domain-containing histone demethylation PROT; 94.73
2opk_A112 Hypothetical protein; putative mannose-6-phosphate 92.74
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 92.18
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 91.9
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 91.66
2q30_A110 Uncharacterized protein; double-stranded beta-heli 91.31
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 91.25
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 91.16
3h8u_A125 Uncharacterized conserved protein with double-STR 90.84
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 90.27
2xlg_A239 SLL1785 protein, CUCA; metal binding protein, cupi 90.23
1v70_A105 Probable antibiotics synthesis protein; structural 90.04
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 90.02
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 89.89
3d82_A102 Cupin 2, conserved barrel domain protein; structur 89.5
1o5u_A101 Novel thermotoga maritima enzyme TM1112; cupin, st 89.4
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 89.14
2i45_A107 Hypothetical protein; neisseria meningitidis cupin 88.33
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 88.16
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 88.14
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 88.09
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 87.75
1juh_A350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 87.37
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 87.13
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 86.52
3lwc_A119 Uncharacterized protein; structural genomics, unkn 86.4
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 86.24
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 85.97
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 85.39
4axo_A151 EUTQ, ethanolamine utilization protein; structural 85.2
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 84.65
3rns_A227 Cupin 2 conserved barrel domain protein; structura 84.38
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 84.3
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 83.74
1vj2_A126 Novel manganese-containing cupin TM1459; structura 83.66
4i4a_A128 Similar to unknown protein; structural genomics, P 82.95
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 82.66
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 82.39
1qwr_A319 Mannose-6-phosphate isomerase; structural genomics 80.88
1y3t_A337 Hypothetical protein YXAG; BI cupin, dioxygenase, 80.68
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 80.2
1zx5_A300 Mannosephosphate isomerase, putative; STRU genomic 80.1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.5e-137  Score=1084.07  Aligned_cols=353  Identities=32%  Similarity=0.552  Sum_probs=272.4

Q ss_pred             CChHHHHHHHhcCCCEEEEeccccccCCCCChhHHHHHHHHhhccccccccceeeeecCCCceeecchhhhhccccCCcc
Q 006745          174 GDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRF  253 (632)
Q Consensus       174 ~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsWeP~~mwra~~e~~~~~~~~~~~vkaiDCld~~evei~i~qFf~Gy~~gr~  253 (632)
                      +|+.|||+||++|||||||||++++++++|+|++|||+|++         ..+++|||++|++++|++++||+||++++.
T Consensus        22 ~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd---------~~~~lidC~~~~~~~i~v~~Ff~Gf~~~~~   92 (392)
T 2ypd_A           22 SNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGD---------HQADLLNCKDSIISNANVKEFWDGFEEVSK   92 (392)
T ss_dssp             THHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTT---------SCCCCEETTTCCBCSCCHHHHHHTSSBGGG
T ss_pred             ccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcC---------ceeeeeeCCCCccccCcHHHHhhhcccccc
Confidence            89999999999999999999999999999999999999975         237789999999999999999999999753


Q ss_pred             ---CCCCCcceeecCCCCChhhHHHhcchhhHHhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeecccccccc
Q 006745          254 ---DKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQEL  330 (632)
Q Consensus       254 ---~~~~wp~mLKLKDWPps~~F~e~LP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eEl  330 (632)
                         +++|||+|||||||||+++|+++||+||+|||++|||||||||+ |+||||++||+++++||||||||||||+++++
T Consensus        93 r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~~~  171 (392)
T 2ypd_A           93 RQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAK  171 (392)
T ss_dssp             C------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEECCSTTTT
T ss_pred             CCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhhcCcchhc
Confidence               57999999999999999999999999999999999999999985 99999999999999999999999999999999


Q ss_pred             CCCCCcccccccccchhhhhhccccccCChhHHHHHHHHHHHHHhhhhhhhhcCCCCCcccccCCCCCCccccccCCCCC
Q 006745          331 GRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKP  410 (632)
Q Consensus       331 GrGDSvTkLH~DmSDAVNIL~htaev~~~~~~~~~i~kLk~~~~~qd~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  410 (632)
                      |+|+|||||||||||||||||||++++. .+...+.+.++ ++.++++.+.+.                           
T Consensus       172 ~~~~gvT~LH~DmsDaVNiL~h~~~~~~-~~~~~~~~~l~-~~~~~~~d~~~~---------------------------  222 (392)
T 2ypd_A          172 DHDIGTTNLHIEVSDVVNILVYVGIAKG-NGILSKAGILK-KFEEEDLDDILR---------------------------  222 (392)
T ss_dssp             CTTCCSEEEEECSSEEEEEEEEEECCBC-TTCCCHHHHHH-HHHTSCCCHHHH---------------------------
T ss_pred             ccCCCcceeeeehhhhhhhhheecccCc-cccchhhhhhh-hhhhccccHHHh---------------------------
Confidence            9999999999999999999999987653 22222223232 232222111100                           


Q ss_pred             CCCCCCcccCCCcccccCCCCCCccccchhhhhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCcceeeeecCCChHHHHH
Q 006745          411 DDGDGVGVVPQDSQICDSMLNDPIPVQRAISEEASEAIADLGKSRESGEPSNIPENEFESADGGAVWDIFRRQDISKLQD  490 (632)
Q Consensus       411 ~~~~~v~~~~~~~~~c~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLre  490 (632)
                                                          +.  +               .+..+.+||+||||||||++|||+
T Consensus       223 ------------------------------------~r--~---------------~~~~~~~GAlW~Ifr~~D~~klr~  249 (392)
T 2ypd_A          223 ------------------------------------KR--L---------------KDSSEIPGALWHIYAGKDVDKIRE  249 (392)
T ss_dssp             ------------------------------------HH--H---------------TCTTCCEEEEEEEECGGGHHHHHH
T ss_pred             ------------------------------------hh--c---------------cCCCCCCCceeeeeCHhhHHHHHH
Confidence                                                00  0               012367999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCcccCCccccccccCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccccchhhhhhhc
Q 006745          491 YLKKHFREFRHIHCCPVQQVIHPIHDQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALD  570 (632)
Q Consensus       491 yL~kh~~Efrh~~~~pv~~v~dPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlD  570 (632)
                      ||++|++||    |.++.++.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+|
T Consensus       250 ~L~~~~~e~----~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~d  325 (392)
T 2ypd_A          250 FLQKISKEQ----GLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTED  325 (392)
T ss_dssp             HHHHHHHHH----C------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEE
T ss_pred             HHHHHHHhh----CCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhh
Confidence            999999998    4567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHHhhcCCCccCCccchhhHhHHHHHHHHHHHHHhCCCCC
Q 006745          571 FVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAVKDISDPGA  623 (632)
Q Consensus       571 FVSPEnV~ec~rLteEfR~Lp~~H~akEDKLeVkkm~l~A~~~Av~~l~~~~~  623 (632)
                      |||||||++|++||+|||+|| +|++||||||||||+||||++||++|+...+
T Consensus       326 f~spe~~~~c~~lt~E~R~l~-~~~~~edkLqvk~m~~~av~~av~~l~~~~~  377 (392)
T 2ypd_A          326 FVSPEHLVESFHLTQELRLLK-EEINYDDKLQVKNILYHAVKEMVRALKIHED  377 (392)
T ss_dssp             ECCGGGHHHHHHHHHHC------------------------------------
T ss_pred             hcChhhHHHHHHHHHHHhhcc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999999997 6999999999999999999999999997643
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Back     alignment and structure
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3 Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 632
d1vrba1319 b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla 2e-04
d1sq4a_273 b.82.1.11 (A:) Glyoxylate-induced protein PA1140 { 7e-04
d1o4ta_115 b.82.1.9 (A:) Hypothetical protein TM1287 {Thermot 0.002
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 11/160 (6%)

Query: 470 SADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVIHPIHDQVFY----LSSEH 525
           + +GG     F        Q   +K ++  ++ +      + H    +  Y    L S  
Sbjct: 129 AKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNP--MQHYDLSEAPYYPDDLQSYW 186

Query: 526 KAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP---ENVSQCVR 582
           K    +E   +        G  +++P G  H  ++ ++ +   + F  P   + +   +R
Sbjct: 187 KGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAALR 246

Query: 583 --LTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAVKDISD 620
             L  + R        +      K  +   +   ++ +S+
Sbjct: 247 KKLISDNRFRELAVNHQSLHESSKSELNGYLESLIQTLSE 286
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273 Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 98.97
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 98.76
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 94.25
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 93.92
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 92.63
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 91.91
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 91.75
d1rc6a_253 Hypothetical protein YlbA {Escherichia coli [TaxId 91.24
d1sefa_250 Hypothetical protein EF2996 {Enterococcus faecalis 90.73
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 89.58
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 89.4
d1sfna_245 Hypothetical protein DR1152 {Deinococcus radiodura 87.44
d1sq4a_273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 85.32
d1x82a_190 Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc 83.86
d1y9qa299 Probable transcriptional regulator VC1968, C-termi 81.94
d1qwra_315 Mannose-6-phosphate isomerase ManA {Bacillus subti 81.43
d1zx5a1299 Putative mannosephosphate isomerase AF0035 {Archae 81.3
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=7.1e-11  Score=119.10  Aligned_cols=38  Identities=16%  Similarity=0.384  Sum_probs=34.6

Q ss_pred             CCcceEEEeecCCeEEecCCCcccccccch-hhhhhhcc
Q 006745          534 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKS-CIKAALDF  571 (632)
Q Consensus       534 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS-CIKVAlDF  571 (632)
                      ++.+|.+++.+||++|||+|..|||+||.+ ||.|++.|
T Consensus       243 ~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         243 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             cCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence            357999999999999999999999999965 89999987
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure