Citrus Sinensis ID: 006746
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 632 | 2.2.26 [Sep-21-2011] | |||||||
| Q96EN8 | 888 | Molybdenum cofactor sulfu | yes | no | 0.691 | 0.492 | 0.231 | 2e-18 | |
| Q14CH1 | 862 | Molybdenum cofactor sulfu | yes | no | 0.707 | 0.518 | 0.228 | 8e-18 | |
| Q9N0E7 | 882 | Molybdenum cofactor sulfu | yes | no | 0.681 | 0.488 | 0.226 | 1e-16 | |
| Q8LGM7 | 816 | Molybdenum cofactor sulfu | N/A | no | 0.411 | 0.318 | 0.252 | 1e-14 | |
| Q9C5X8 | 819 | Molybdenum cofactor sulfu | no | no | 0.318 | 0.245 | 0.263 | 5e-14 | |
| Q4WPE6 | 843 | Molybdenum cofactor sulfu | yes | no | 0.707 | 0.530 | 0.221 | 7e-13 | |
| B0Y691 | 843 | Molybdenum cofactor sulfu | N/A | no | 0.707 | 0.530 | 0.221 | 7e-13 | |
| Q9UV64 | 839 | Molybdenum cofactor sulfu | yes | no | 0.672 | 0.506 | 0.224 | 1e-12 | |
| A1CHL0 | 845 | Molybdenum cofactor sulfu | N/A | no | 0.712 | 0.532 | 0.220 | 2e-12 | |
| Q655R6 | 824 | Molybdenum cofactor sulfu | no | no | 0.389 | 0.298 | 0.243 | 4e-12 |
| >sp|Q96EN8|MOCOS_HUMAN Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 128/553 (23%), Positives = 219/553 (39%), Gaps = 116/553 (20%)
Query: 93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVS 152
+ ++RA+E+ +L+ + + LD+ G LFS +QL S L P
Sbjct: 35 LRELRAREFSRLAGTVY--LDHAGATLFSQSQLESFTSD-------LMENTYGNP----- 80
Query: 153 YKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFM 212
+ N+ ++L H E ++ RI+ + + DY ++FTA T+A KL+AE++P++
Sbjct: 81 -HSQNISSKLTHDTVEQ-----VRYRILAHFHTTAEDYTVIFTAGSTAALKLVAEAFPWV 134
Query: 213 S--VKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKL----RKMVVSK 266
S ++ + + Y +++ +++ G R ++ + + E L + +
Sbjct: 135 SQGPESSGSRFCYLTDSHTSVV------GMRNVTMAINVISTPVRPEDLWSAEERSASAS 188
Query: 267 GKKKKQRGLFVFPLHSRMTGARYPYLWMR---------IAQENDWHILIDACALGPKDMD 317
+ LF +P S +G RYP W+ ++ W +L+DA +
Sbjct: 189 NPDCQLPHLFCYPAQSNFSGVRYPLSWIEEVKSGRLHPVSTPGKWFVLLDAASY--VSTS 246
Query: 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNT-SSGMVSLLPAKKQLW 376
LS + DF+ SFY+IFG P+G G L V P+L G S A + +
Sbjct: 247 PLDLSAHQADFVPISFYKIFG-FPTGLGALLVHNRAAPLLRKTYFGGGTASAYLAGEDFY 305
Query: 377 LTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQ 436
+ P Q+ + E G IS + D I
Sbjct: 306 I----------PRQSVAQ-----------------------RFEDGTISFL-----DVIA 327
Query: 437 QKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRGRCLINWLVNALMKLQHPNTEGNAL 494
K+ G D ++ L G+ I + L + AL LQ+PN G +
Sbjct: 328 LKH--------------GFDTLERLTGGMENIKQHTFTLAQYTYVALSSLQYPN--GAPV 371
Query: 495 VKIY------GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548
V+IY P++ +GP + FNV D K I V K+A NI L G +
Sbjct: 372 VRIYSDSEFSSPEV---QGPIINFNVLDDKGNIIGYSQVDKMASLYNIHLRTGCFCNTGA 428
Query: 549 SDKYQKEKDNVLEKTDREAKSKSDN-NRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607
++ + ++ K + DN + D G V S GY++ +DV AF+
Sbjct: 429 CQRHLGISNEMVRKHFQAGHVCGDNMDLIDGQPTG--SVRISFGYMSTLDDVQ---AFLR 483
Query: 608 QFLDADFVEKARW 620
+D W
Sbjct: 484 FIIDTRLHSSGDW 496
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. In vitro, the C-terminal domain is able to reduces N-hydroxylated prodrugs, such as benzamidoxime. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 9 |
| >sp|Q14CH1|MOCOS_MOUSE Molybdenum cofactor sulfurase OS=Mus musculus GN=Mocos PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 129/564 (22%), Positives = 226/564 (40%), Gaps = 117/564 (20%)
Query: 71 PSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQES 130
P+ Q+ L T+ + + ++R +E+ +L+ + + LD+ G LF +QL
Sbjct: 13 PAFQRHLEASTQRLAHGYGLRSMSELRDQEFGRLAGTVY--LDHAGATLFPQSQL----- 65
Query: 131 SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190
++ L P + N+ ++L H E ++ RI+ + + DY
Sbjct: 66 --TNFTKDLMENVYGNP------HSQNITSKLTHDTVEQ-----VRYRILTHFHTTPEDY 112
Query: 191 GMVFTANRTSAFKLLAESYPFM--SVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248
++FTA T+A +L+AE++P++ S +N + + Y ++ +++ G R ++A S
Sbjct: 113 IVIFTAGSTAALRLVAEAFPWVSRSPENSGSHFCYLTDNHTSVV------GMRKVAAAMS 166
Query: 249 WPRLRINSEKLRKMVVSKGKKK-------KQRGLFVFPLHSRMTGARYPYLWMR------ 295
+ + E M ++GK + LF +P S +G RYP W+
Sbjct: 167 VTSIPVKPE---DMWSAEGKDAGACDPDCQLPHLFCYPAQSNFSGTRYPLSWVEEVKSGR 223
Query: 296 ---IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352
+ W +L+DA + LS + DF+ SFY+IFG P+G G L V K
Sbjct: 224 RSPVNAPGKWFVLLDAASY--VSTSPLDLSAHQADFIPISFYKIFGL-PTGLGALLVNKH 280
Query: 353 TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIE 412
P+L G +L E F P S
Sbjct: 281 VAPLLRKGYFGG------GTAAAYLAGE-----------------------DFYVPRS-- 309
Query: 413 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRG 470
+ + E G IS + D I K+ G D ++ L G+ I +
Sbjct: 310 -SVAERFEDGTISFL-----DVIALKH--------------GFDALEHLTGGMVNIQQHT 349
Query: 471 RCLINWLVNALMKLQHPNTEGNALVKIY------GPKIRFDRGPALAFNVFDWKREKIEP 524
L+ + +AL L++ N G +V+IY P + +GP + FNV D + I
Sbjct: 350 FALVQYTHSALSSLRYLN--GAPVVRIYSDSEFSSPDV---QGPIINFNVLDDGGKIIGY 404
Query: 525 VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN-NRKDKANLGI 583
V K+A NI L G ++ ++ D +++K + D+ + D G
Sbjct: 405 SQVDKMASLYNIHLRTGCFCNLGACQRHLGLSDEMVKKHFQAGHVCGDDVDIIDGRPTG- 463
Query: 584 TVVTASLGYLANFEDVYRLWAFVA 607
V S GY++ ED F++
Sbjct: 464 -SVRISFGYMSTLEDAQAFLRFIS 486
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9N0E7|MOCOS_BOVIN Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=2 | Back alignment and function description |
|---|
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 121/535 (22%), Positives = 217/535 (40%), Gaps = 104/535 (19%)
Query: 93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVS 152
+ ++RA+E+ +L+ + + LD+ G LF +Q+ + L P
Sbjct: 35 LHELRAREFGRLAGTVY--LDHAGTTLFPQSQI-------TSFMKDLMENVYGNP----- 80
Query: 153 YKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFM 212
+ N+ ++L H E ++ RI+ + S DY ++FT+ T+A KL+AE++P++
Sbjct: 81 -HSQNISSKLTHDTVEQ-----VRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWV 134
Query: 213 S--VKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK 270
S + + + Y +++ +++ + A +S+ P ++E+ +
Sbjct: 135 SPGPEGSGSCFCYLTDSHTSVVGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQ 194
Query: 271 KQRGLFVFPLHSRMTGARYPYLWMR---------IAQENDWHILIDACA-LGPKDMDSFG 320
LF +P S +G RYP W+ ++ W +L+DA A +G +D
Sbjct: 195 PPH-LFCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD--- 250
Query: 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDE 380
LS+ + DF+ SFY+IFG P+G G L V +L G + D+
Sbjct: 251 LSVHQADFVPISFYKIFG-FPTGLGALLVNNRLAALLRKTYFGGGTA-----AAYLAGDD 304
Query: 381 FSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNA 440
F +E VA + E G IS + D I K+
Sbjct: 305 F-----------YVPRESVAE----------------RFEDGTISFL-----DVIALKH- 331
Query: 441 NTNGGGGSEIECRGLDQVDSL--GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 498
G D ++ L G+ I + L + AL L++PN G +V+IY
Sbjct: 332 -------------GFDALERLTGGMESIRQHTFTLAQYTYTALSSLRYPN--GAPVVQIY 376
Query: 499 ------GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 552
P++ +GP ++FNV D + V K+A NI + G + ++
Sbjct: 377 SDSDFSSPEV---QGPVISFNVLDDHGNVVGYSQVDKMASLHNIHVRTGCFCNTGACQRH 433
Query: 553 QKEKDNVLEKTDREAKSKSDN-NRKDKANLGITVVTASLGYLANFEDVYRLWAFV 606
D +++K + D+ + D G V S GY++ ED F+
Sbjct: 434 LGISDEMVKKHLQAGHVCGDDVDLIDGQPTG--SVRISFGYMSTLEDAQAFLRFI 486
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q8LGM7|MOCOS_SOLLC Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 141/325 (43%), Gaps = 65/325 (20%)
Query: 74 QQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLH---KQES 130
+Q L EF Y ID+IRA E+ +L+ + LD+ G L+S +Q+ K +
Sbjct: 8 EQFLKEFGSYYGYANSPKNIDEIRATEFKRLN--DTVYLDHAGATLYSESQMEAVFKDLN 65
Query: 131 SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190
S + P S T +L T+ + G +++++ F N S +Y
Sbjct: 66 STLYGNPH-------------SQSTCSLATEDIVG--------KARQQVLSFFNASPREY 104
Query: 191 GMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRT-SEKRGA--------- 240
+FT+ T+A KL+ E++P+ S + + Y E+ IR + +GA
Sbjct: 105 SCIFTSGATAALKLVGETFPWSSNSSFM--YSMENHNSVLGIREYALSKGAAAFAVDIED 162
Query: 241 -RVMSAEFSWPRLRINSEKLRKM----VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR 295
V +E L++ +++ V+ +G LF FP +G ++ ++
Sbjct: 163 THVGESESPQSNLKLTQHHIQRRNEGGVLKEGMTGNTYNLFAFPSECNFSGRKFDPNLIK 222
Query: 296 IAQEND-------------WHILIDA---CALGPKDMDSFGLSLVRPDFLICSFYQIFGE 339
I +E W +LIDA CA P + LS+ + DF++ SFY++FG
Sbjct: 223 IIKEGSERILESSQYSRGCWLVLIDAAKGCATNPPN-----LSMFKADFVVFSFYKLFGY 277
Query: 340 NPSGFGCLFVKKSTVPILVDNTSSG 364
P+G G L V+K ++ SG
Sbjct: 278 -PTGLGALIVRKDAAKLMKKTYFSG 301
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9C5X8|MOCOS_ARATH Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 42/243 (17%)
Query: 156 GNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK 215
GN +Q S L + + +++++ N S DY +FT+ T+A KL+ E++P+
Sbjct: 65 GNPHSQSDISSATSDLIADARHQVLEYFNASPEDYSCLFTSGATAALKLVGETFPWTQDS 124
Query: 216 NLLTVYDYESEAVEAMIRT-SEKRGARVMSAEF------------SWPRLRINSEKLRKM 262
N L Y E+ IR + +GA + + S P +++ ++
Sbjct: 125 NFL--YTMENHNSVLGIREYALAQGASACAVDIEEAANQPGQLTNSGPSIKVKHRAVQMR 182
Query: 263 VVSKGKKKKQRG----LFVFPLHSRMTGARYPYLWMRIAQEND--------------WHI 304
SK +K++ RG LF FP +G R+ +++ +EN W +
Sbjct: 183 NTSKLQKEESRGNAYNLFAFPSECNFSGLRFNLDLVKLMKENTETVLQGSPFSKSKRWMV 242
Query: 305 LIDA---CALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNT 361
LIDA CA P D+ + DF++ SFY++FG P+G G L V+ +L
Sbjct: 243 LIDAAKGCATLPPDLSEY-----PADFVVLSFYKLFGY-PTGLGALLVRNDAAKLLKKTY 296
Query: 362 SSG 364
SG
Sbjct: 297 FSG 299
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Modulates cold stress- and osmotic stress-responsive gene expression by acting as key regulator of abscisic acid (ABA) biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q4WPE6|MOCOS_ASPFU Molybdenum cofactor sulfurase OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hxB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 126/569 (22%), Positives = 218/569 (38%), Gaps = 122/569 (21%)
Query: 72 SLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESS 131
S ++ + E+ + Y + +D IR +EY QL + T LD+ G L++ + + ES
Sbjct: 6 SCEEEILEYGRGYSE-----DVDTIREREYPQLK--DTTYLDHAGTTLYAKSLI---ESF 55
Query: 132 PSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYG 191
L +L GN + + ++ R + F ++
Sbjct: 56 SRELTSNL---------------FGNPHSLSTSSQLSTQRVDDVRLRALRFFKADPEEFD 100
Query: 192 MVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAE---FS 248
+VF AN T+A KL+A+ + + Y ++ +R ++G R +++
Sbjct: 101 LVFVANATAAIKLVADGMRDSTRQGFWYGYHVDAHTSLVGVRELAEKGGRCFTSDDEVED 160
Query: 249 W-PRL-RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQE------N 300
W RL + SE L+ LF +P S M G R P+ W + ++
Sbjct: 161 WISRLCDVRSESLK--------------LFAYPAQSNMNGRRLPFSWCKKIRDQGETTGG 206
Query: 301 DWHILIDACAL---GPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357
+ + L+DA +L P D+ + PDF + SFY+IFG G L V+KS I
Sbjct: 207 NVYTLLDAASLVSTSPLDLSDASAA---PDFTVLSFYKIFGF--PDLGALIVRKSAGQIF 261
Query: 358 VDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415
G V ++ + W + SS E + +A + F + R
Sbjct: 262 EHRRYFGGGTVDMVLTRGLQWHAKKQSSIHDRLEDGTLPFHNIIALDSAF----ATHERL 317
Query: 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475
G ++ IS R L
Sbjct: 318 FGSMQN--------------------------------------------ISSHTRFLAK 333
Query: 476 WLVNALMKLQHPNTEGNALVKIY-GPKIRFD----RGPALAFNVFDWKREKIEPVLVQKL 530
L + L L+H N G + ++Y P+ ++ +GP +AFN+ + + I V++L
Sbjct: 334 RLYDRLNALRHFN--GQRVCELYKSPRSDYNQPSTQGPIIAFNLRNSQGSWIGKSEVERL 391
Query: 531 ADRENISLSYGSLHHI-WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS 589
A +NI + GSL + S ++L++ + D++ D G V+ S
Sbjct: 392 AATKNIQIRSGSLCNPGGTSGSLGWTGADLLQQFSAGLRCGDDHDVMDGRPTG--VLRLS 449
Query: 590 LGYLANFEDVYRLWAFVAQFLDADFVEKA 618
LG + N ED+ V +F +VEKA
Sbjct: 450 LGPMTNLEDINTFVELVEEF----YVEKA 474
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|B0Y691|MOCOS_ASPFC Molybdenum cofactor sulfurase OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=hxB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 126/569 (22%), Positives = 218/569 (38%), Gaps = 122/569 (21%)
Query: 72 SLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESS 131
S ++ + E+ + Y + +D IR +EY QL + T LD+ G L++ + + ES
Sbjct: 6 SCEEEILEYGRGYSE-----DVDTIREREYPQLK--DTTYLDHAGTTLYAKSLI---ESF 55
Query: 132 PSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYG 191
L +L GN + + ++ R + F ++
Sbjct: 56 SRELTSNL---------------FGNPHSLSTSSQLSTQRVDDVRLRALRFFKADPEEFD 100
Query: 192 MVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAE---FS 248
+VF AN T+A KL+A+ + + Y ++ +R ++G R +++
Sbjct: 101 LVFVANATAAIKLVADGMRDSTRQGFWYGYHVDAHTSLVGVRELAEKGGRCFTSDDEVED 160
Query: 249 W-PRL-RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQE------N 300
W RL + SE L+ LF +P S M G R P+ W + ++
Sbjct: 161 WISRLCDVRSESLK--------------LFAYPAQSNMNGRRLPFSWCKKIRDQGETTGG 206
Query: 301 DWHILIDACAL---GPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357
+ + L+DA +L P D+ + PDF + SFY+IFG G L V+KS I
Sbjct: 207 NVYTLLDAASLVSTSPLDLSDASAA---PDFTVLSFYKIFGF--PDLGALIVRKSAGQIF 261
Query: 358 VDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415
G V ++ + W + SS E + +A + F + R
Sbjct: 262 EHRRYFGGGTVDMVLTRGLQWHAKKQSSIHDRLEDGTLPFHNIIALDSAF----ATHERL 317
Query: 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475
G ++ IS R L
Sbjct: 318 FGSMQN--------------------------------------------ISSHTRFLAK 333
Query: 476 WLVNALMKLQHPNTEGNALVKIY-GPKIRFD----RGPALAFNVFDWKREKIEPVLVQKL 530
L + L L+H N G + ++Y P+ ++ +GP +AFN+ + + I V++L
Sbjct: 334 RLYDRLNALRHFN--GQRVCELYKSPRSDYNQPSTQGPIIAFNLRNSQGSWIGKSEVERL 391
Query: 531 ADRENISLSYGSLHHI-WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS 589
A +NI + GSL + S ++L++ + D++ D G V+ S
Sbjct: 392 AATKNIQIRSGSLCNPGGTSGSLGWTGADLLQQFSAGLRCGDDHDVMDGRPTG--VLRLS 449
Query: 590 LGYLANFEDVYRLWAFVAQFLDADFVEKA 618
LG + N ED+ V +F +VEKA
Sbjct: 450 LGPMTNLEDINTFVELVEEF----YVEKA 474
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) (taxid: 451804) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9UV64|MOCOS_EMENI Molybdenum cofactor sulfurase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hxB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 121/539 (22%), Positives = 208/539 (38%), Gaps = 114/539 (21%)
Query: 93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVS 152
+D IR +EY L + T LD+ G L++ + +H S D+
Sbjct: 19 VDVIREREYPLLK--DTTYLDHAGTTLYANSLIH--------------SFGRDL------ 56
Query: 153 YKTGNLKTQLLHGGQESGLESA----MKKRIMDFLNISENDYGMVFTANRTSAFKLLAES 208
TGNL S L + ++ R + F N +++ +VF AN T+ KL+A++
Sbjct: 57 --TGNLYGNPHSMSASSQLSAQRVDDIRLRALRFFNADPDEFDLVFVANATAGIKLVADA 114
Query: 209 YPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK 268
S + Y ++ +R K G+R +N +++ + G
Sbjct: 115 LQ-NSPQGFWYGYYVDAHTSLVGVRELAKMGSRCF----------VNEDEVDSWISGLGS 163
Query: 269 KKKQR-GLFVFPLHSRMTGARYPYLW---MRIAQEND---WHILIDACAL---GPKDMDS 318
++++ GLF +P S M G R P W +R +EN + L+DA + P D+
Sbjct: 164 RREESLGLFAYPAQSNMNGRRVPMRWCEQIRAQKENADNMIYTLLDAASFVSTSPLDLSK 223
Query: 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNT--SSGMVSLLPAKKQLW 376
+ PDF + SFY+IFG G L V+KS+ + G V ++ W
Sbjct: 224 IAAA---PDFTVLSFYKIFGF--PDLGALIVRKSSGDVFKHRKFFGGGTVDMVLTDGNPW 278
Query: 377 LTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQ 436
+ SS E + +A + F G+L
Sbjct: 279 HAKKQSSIHQSLEDGTLPFHSIIALDSAF--------ETHGRL----------------- 313
Query: 437 QKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVK 496
R ++ V S R L L + + L+H N G + +
Sbjct: 314 ---------------FRSMENVAS--------HTRFLAKRLRDRMNALKHYN--GTKVCQ 348
Query: 497 IY-GPKIRFD----RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD- 550
+Y P +D +GP LAFN+ + + I V++LA +NI + G+L + +
Sbjct: 349 LYMSPNSSYDDASSQGPILAFNLRNSRGMWIGKSEVERLASIKNIQIRSGTLCNPGGTAL 408
Query: 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609
++L + D++ D+ GI + SLG +++ DV AF+ +F
Sbjct: 409 SLGWTGADMLRHFSAGMRCGDDHDIMDERPTGILRI--SLGAMSSLTDVDTFIAFLEEF 465
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|A1CHL0|MOCOS_ASPCL Molybdenum cofactor sulfurase OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=hxB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/559 (22%), Positives = 214/559 (38%), Gaps = 109/559 (19%)
Query: 75 QSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSH 134
+ + E+ + Y + +D IR +EY QL + T LD+ G L++ + +
Sbjct: 9 EDILEYGRGYSE-----DVDIIREREYPQLK--DTTYLDHAGTTLYAKSLIEAF------ 55
Query: 135 LRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVF 194
S++L F GN + + ++ R + F +D+ +VF
Sbjct: 56 ------SRDLTSNLF------GNPHSMSASSQLSTRRVDDVRLRALRFFKADPDDFDLVF 103
Query: 195 TANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRI 254
AN T+A KL+A++ M Y Y +A +++ GAR ++A+ + R
Sbjct: 104 VANATAAIKLVADA---MRDSRQGFWYGYHVDAHTSLV------GARELAAKGN--RCFS 152
Query: 255 NSEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPYLWMRI------AQENDWHILID 307
+ E++ + S + + LF +P S + G R P W A + + L+D
Sbjct: 153 SDEEVEGWIQSLREAGPESLNLFAYPAQSNLNGRRLPLSWCETIRRRSEAAGGNTYTLLD 212
Query: 308 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNT--SSGM 365
A +L + PDF + SFY+IFG G L V+KS I G
Sbjct: 213 AASLVSTSPLDLSDAAAAPDFTVLSFYKIFGF--PDLGALIVRKSAGHIFEQRRFFGGGT 270
Query: 366 VSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS 425
V ++ ++ W + SS E + +A + F + R G +E
Sbjct: 271 VDMVLTREMQWHAKKQSSIHDRLEDGTLPFHSIIALDSAF----ATHRRLFGSMEN---- 322
Query: 426 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ 485
+S R L L + L L+
Sbjct: 323 ----------------------------------------VSSHTRFLAKRLYDKLAALK 342
Query: 486 HPNTEGNALVKIY-GPKIRFDR----GPALAFNVFDWKREKIEPVLVQKLADRENISLSY 540
H N G + ++Y P +++ GP +AFN+ + I V++LA +NI
Sbjct: 343 HSN--GERVCQLYTNPFSDYNKAASQGPIIAFNLRNSHGAWIGKSEVERLATVKNIQFRS 400
Query: 541 GSL-HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDV 599
GSL + S ++L++ + D++ D G V+ SLG + N D+
Sbjct: 401 GSLCNPGGTSGSLGWTGADLLQQFSAGLRCGDDHDVMDGRPTG--VLRLSLGAMTNLADI 458
Query: 600 YRLWAFVAQFLDADFVEKA 618
+ FV +F +VE+A
Sbjct: 459 NTVIQFVEEF----YVERA 473
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q655R6|MOCOS_ORYSJ Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica GN=MCSU3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 131/304 (43%), Gaps = 58/304 (19%)
Query: 93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVS 152
+D++RA E+ +L LD+ G L+S Q+ D+ S
Sbjct: 25 VDEMRAAEFKRLE--GMAYLDHAGATLYSEAQMA------------------DVLKDLAS 64
Query: 153 YKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPF- 211
GN +Q S L +A + +++ + N S +Y +FT+ T+A KL+ E +P+
Sbjct: 65 NVYGNPHSQSDSSMAASDLVTAARHQVLKYFNASPREYKCIFTSGATAALKLVGECFPWS 124
Query: 212 ------MSVKN---LLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRIN---SEKL 259
+++N +L + +Y ++ + GA + S+ +I+ +++
Sbjct: 125 RESCYMYTMENHNSVLGIREYALSKGATVLAVDVEEGADLAKDNGSYSLYKISRRTNQRR 184
Query: 260 RKMVVS----KGKKKKQRG----LFVFPLHSRMTGARYPYLWMRIA--------QENDWH 303
K V+S G G +F FP +G ++ +++ Q+ W
Sbjct: 185 SKDVLSHNCQNGSLSDISGNNWNIFAFPSECNFSGQKFSLSLVKLIKEGKIPLQQQGKWM 244
Query: 304 ILIDA---CALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDN 360
+LIDA CA P + L++ DF++CSFY+IFG P+G G L VK +L
Sbjct: 245 VLIDAAKGCATEPPN-----LTVYPADFVVCSFYKIFGY-PTGLGALIVKNEAANLLNKT 298
Query: 361 TSSG 364
SG
Sbjct: 299 YFSG 302
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 632 | ||||||
| 224134691 | 645 | predicted protein [Populus trichocarpa] | 0.992 | 0.972 | 0.689 | 0.0 | |
| 225469324 | 654 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.955 | 0.673 | 0.0 | |
| 255539593 | 664 | molybdopterin cofactor sulfurase, putati | 0.982 | 0.935 | 0.647 | 0.0 | |
| 356534167 | 649 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.961 | 0.622 | 0.0 | |
| 357444119 | 643 | Molybdenum cofactor sulfurase [Medicago | 0.965 | 0.948 | 0.639 | 0.0 | |
| 356574465 | 653 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.946 | 0.624 | 0.0 | |
| 225426751 | 652 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.957 | 0.583 | 0.0 | |
| 449451789 | 624 | PREDICTED: molybdenum cofactor sulfurase | 0.969 | 0.982 | 0.601 | 0.0 | |
| 449506487 | 624 | PREDICTED: molybdenum cofactor sulfurase | 0.969 | 0.982 | 0.599 | 0.0 | |
| 356529304 | 646 | PREDICTED: molybdenum cofactor sulfurase | 0.936 | 0.916 | 0.606 | 0.0 |
| >gi|224134691|ref|XP_002321884.1| predicted protein [Populus trichocarpa] gi|222868880|gb|EEF06011.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/650 (68%), Positives = 517/650 (79%), Gaps = 23/650 (3%)
Query: 1 MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFP 60
MQ CL+EVSQACL GCCPSP S +PL+K+SK R+TSA CR++FA T SSIFP
Sbjct: 1 MQPRCLKEVSQACL---SGCCPSPILGFS-EPLNKISKPRSTSATCRQNFAKTTTSSIFP 56
Query: 61 DTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLF 120
+T FTN ESLPSLQ+S F + YPQY DTYQ+DQ RA+EY L+LSNHTCLDY GIGLF
Sbjct: 57 NTHFTNPESLPSLQESFNGFIEVYPQYSDTYQVDQTRAQEYNHLALSNHTCLDYIGIGLF 116
Query: 121 SYNQLHKQESSPSHL-RPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179
SY QL K +S L S P QN+ IPFFSVSYKTGNLKTQLLHGGQES LESAMKKRI
Sbjct: 117 SYAQLQKLDSEKQILPSASSPPQNMHIPFFSVSYKTGNLKTQLLHGGQESALESAMKKRI 176
Query: 180 MDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRG 239
M FLNISENDY MVFTANRTSAFKLLAESYPF + + LLTVYDYESEAVEAMI +S+K+G
Sbjct: 177 MSFLNISENDYSMVFTANRTSAFKLLAESYPFKTSRKLLTVYDYESEAVEAMINSSDKKG 236
Query: 240 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK-QRGLFVFPLHSRMTGARYPYLWMRIAQ 298
A+VMSAEFSWPRLRI S KLRKMV K K+KK +RGLFVFPLHSRMTGARYPYLWM IA+
Sbjct: 237 AQVMSAEFSWPRLRIQSAKLRKMVEMKSKRKKTKRGLFVFPLHSRMTGARYPYLWMNIAK 296
Query: 299 ENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358
EN WHILIDACALGPKDMDSFGLSL+RPDFLICSFY+IFGENPSGFGCLFVKKSTVP+L
Sbjct: 297 ENGWHILIDACALGPKDMDSFGLSLIRPDFLICSFYKIFGENPSGFGCLFVKKSTVPLLE 356
Query: 359 DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS--KQEKVAATNTFSGPMSIEMRQS 416
D+ S+GMVSL+PA K L DEFS +++ E SK +++++ ++N+FSGP+S + S
Sbjct: 357 DSVSAGMVSLVPANKMFRLVDEFSGTDSDFEHLSKLGLQEDELDSSNSFSGPISSQTMHS 416
Query: 417 GKLEQGEISEVRRAEADSIQQKNANTNG--------------GGGSEIECRGLDQVDSLG 462
G++EQGE SE + + +QK + T+ G EIECRGLDQVDSLG
Sbjct: 417 GRVEQGETSE-SQTTGTTAKQKVSKTSDIVESGKSAEVMRQENGILEIECRGLDQVDSLG 475
Query: 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI 522
LT IS R RCLINW+VNAL+KL+HPNT LV+IYGP+++FDRGPALAFN+FDWK EK+
Sbjct: 476 LTRISNRARCLINWMVNALLKLKHPNTGEIPLVRIYGPRVKFDRGPALAFNLFDWKGEKV 535
Query: 523 EPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 582
E LVQKLADR NISLSYG LHHI FSD+Y++EK VLEK AK N RK+KA+ G
Sbjct: 536 EAPLVQKLADRSNISLSYGFLHHISFSDEYEEEKATVLEKRVNGAKGTVTNKRKEKADFG 595
Query: 583 ITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 632
ITVVT +LG LANFED YR WAF+AQFLDADFVEKA+WRYTAL+QKT+EV
Sbjct: 596 ITVVTVALGVLANFEDTYRFWAFIAQFLDADFVEKAKWRYTALNQKTVEV 645
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225469324|ref|XP_002267983.1| PREDICTED: uncharacterized protein LOC100248586 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/661 (67%), Positives = 519/661 (78%), Gaps = 36/661 (5%)
Query: 1 MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFP 60
M S C + +Q CL GCCP P P+P KV SR+T+ADCRRDFAA TA+ FP
Sbjct: 1 MHSLCSGDATQVCL---HGCCPRPV--PLPEPQKKVPSSRSTAADCRRDFAATTAACFFP 55
Query: 61 DTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLF 120
+TQFTNHESLPSLQ+S T F +AYPQY +T Q D+IRA+EY+ L LSNH CLDY GIGLF
Sbjct: 56 NTQFTNHESLPSLQESFTLFEEAYPQYSETDQADRIRAQEYHHLLLSNHICLDYIGIGLF 115
Query: 121 SYNQLHKQESSPSHL----RPS-LPS-QNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA 174
S+ Q+ + SSP+ + PS LPS Q+ +IP F +SYK+ NLK+ L +GGQES LESA
Sbjct: 116 SHCQIQIKTSSPTTIASTSSPSNLPSPQSSNIPLFGISYKSVNLKSLLQYGGQESALESA 175
Query: 175 MKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRT 234
MK++IM FLNISENDY MVFTANRTSAFKLLAESYPF S + LLTVYDYESEAVEAM+ T
Sbjct: 176 MKRKIMGFLNISENDYCMVFTANRTSAFKLLAESYPFQSSQKLLTVYDYESEAVEAMVET 235
Query: 235 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM 294
SEKRGARVMSAEFSWPRLR+NS KLRKMVV + KKKK RGLFVFPL SRMTGARY YLWM
Sbjct: 236 SEKRGARVMSAEFSWPRLRVNSGKLRKMVV-RNKKKKNRGLFVFPLQSRMTGARYHYLWM 294
Query: 295 RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV 354
IAQEN WH+L+DACALGPKDMD+FGLSL RPDFLICSFY++FGENP+GFGCLFVKKSTV
Sbjct: 295 NIAQENGWHVLLDACALGPKDMDTFGLSLFRPDFLICSFYKVFGENPTGFGCLFVKKSTV 354
Query: 355 PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK-QEKVAATNTFSGPMSIEM 413
PIL +TS+G+V+L+PAKK WL + S +TEPEQTSK + QE++ +++FSGP+SI+
Sbjct: 355 PILEASTSTGIVNLVPAKKLFWLPADSSGTDTEPEQTSKFEFQEELHTSSSFSGPLSIQK 414
Query: 414 RQSGKLE--QGEISEVRRAE-------------------ADSIQQKNANTNGGGGSEIEC 452
SG+ E QGE SE+ + E AD +QQ N G G EIEC
Sbjct: 415 TLSGRFEYEQGETSELPKTEGTAKHDRPETSKVIEMEKPADFVQQ-NTKVRGKEGLEIEC 473
Query: 453 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE-GNALVKIYGPKIRFDRGPALA 511
RGLD VDSLGL +ISRR R LINWLVNAL KL HPNTE G+ LV+IYGP I+F+RGPALA
Sbjct: 474 RGLDHVDSLGLVLISRRARYLINWLVNALTKLHHPNTEEGSPLVRIYGPNIKFERGPALA 533
Query: 512 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS 571
FNVFDWK EK+EP+L+QKLADR NISLSYG LHH+WFSDKY+ EK V+E+ + EAK +
Sbjct: 534 FNVFDWKGEKVEPILLQKLADRSNISLSYGFLHHLWFSDKYEAEKQRVIERRETEAKGMA 593
Query: 572 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIE 631
N RK K +LGITVVTA+LG+L NFED+YRLWAFVAQFLDADFVEK RWRYTAL+QKTIE
Sbjct: 594 QNKRKGKDDLGITVVTAALGFLTNFEDIYRLWAFVAQFLDADFVEKERWRYTALNQKTIE 653
Query: 632 V 632
V
Sbjct: 654 V 654
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539593|ref|XP_002510861.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] gi|223549976|gb|EEF51463.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/675 (64%), Positives = 509/675 (75%), Gaps = 54/675 (8%)
Query: 1 MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFP 60
MQSPCL+E SQ CL GCCPSP P+P K+ +R+T+A CR +FAA SSIFP
Sbjct: 1 MQSPCLKEASQVCL---HGCCPSPLLGF-PEPRKKLGNNRSTAATCRHNFAATATSSIFP 56
Query: 61 DTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLF 120
+TQFTN ESLP+LQ+S TEF+K YP+Y D+YQ+DQIRA+EYYQLSLS+HTCLDY GIGLF
Sbjct: 57 NTQFTNPESLPTLQESFTEFSKVYPRYSDSYQVDQIRAQEYYQLSLSHHTCLDYIGIGLF 116
Query: 121 SYNQLHKQESSPSHLRPSLPS-----QNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAM 175
SY QL + + S P +N PFFSVSYKTGNLKTQLLHGGQES LES +
Sbjct: 117 SYAQLQNHDCRKKIVSSSCPPPHSPPKNSHFPFFSVSYKTGNLKTQLLHGGQESELESTI 176
Query: 176 KKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTS 235
KKRIM FLN+SEN+Y MVFT+NRTSAFKL+AESYPF S + LLTVYDYESEAVE MI S
Sbjct: 177 KKRIMSFLNLSENEYSMVFTSNRTSAFKLVAESYPFHSSRKLLTVYDYESEAVETMINCS 236
Query: 236 EKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR 295
E +GA+VM AEFSWPRLRI+S KLRKM++ K KKKK+RGLFVFPLHSR++GARYPY+WM
Sbjct: 237 ENKGAQVMPAEFSWPRLRIHSAKLRKMIMRKRKKKKKRGLFVFPLHSRVSGARYPYIWMS 296
Query: 296 IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355
IAQEN WHILIDACALGPKDMDSFGLSL+RPDFLICSFY+IFGENPSGFGCLFVKKSTVP
Sbjct: 297 IAQENGWHILIDACALGPKDMDSFGLSLIRPDFLICSFYKIFGENPSGFGCLFVKKSTVP 356
Query: 356 ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK--SKQEKVAATNTFSGPMSIEM 413
+L D +GMV+L+PAKK W DE S +TE E SK +++++ +N+FSGP+SI
Sbjct: 357 LLEDTACAGMVNLIPAKKLFWFLDESSGTDTEIEHMSKFEIEEDELDTSNSFSGPISISK 416
Query: 414 RQSGKLEQGEISE------------VRRAEADSIQQKNANTNGG---------------- 445
QSG ++QGE SE + E ++ QQ+ T G
Sbjct: 417 LQSG-IQQGETSEPQTGVTTREQKVSQTGEPETAQQQELETTGAAAKQKELETSQNDKVK 475
Query: 446 --------GGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI 497
G EIECRGLD+VD LGLT IS R RCLINWLVNALMKL+HPN E LV+I
Sbjct: 476 KTINSSRNGTMEIECRGLDEVDLLGLTQISNRARCLINWLVNALMKLKHPNNEEVPLVRI 535
Query: 498 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 557
YGPKIRFDRGPA+AFNVFDWK EK++ LVQKLADR NISLSY LHHI FS+KY++E+
Sbjct: 536 YGPKIRFDRGPAMAFNVFDWKGEKVDAPLVQKLADRSNISLSYAFLHHISFSEKYEEERA 595
Query: 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEK 617
+LE + S NRK K NLGITVVT +LG+LANFED YRLWAF+AQFLDADFVEK
Sbjct: 596 TLLE------RKASGVNRKQKENLGITVVTVALGFLANFEDTYRLWAFIAQFLDADFVEK 649
Query: 618 ARWRYTALDQKTIEV 632
A+WRYTAL+QKTIEV
Sbjct: 650 AKWRYTALNQKTIEV 664
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534167|ref|XP_003535629.1| PREDICTED: uncharacterized protein LOC100814630 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/657 (62%), Positives = 498/657 (75%), Gaps = 33/657 (5%)
Query: 1 MQSPCLREVSQACLCTHGGCCPSPFF----SLSPDPLHKVSKSRNTSADCRRDFAAVTAS 56
MQS E S AC GCCP+ P + +K RN+SA+CR FAA TAS
Sbjct: 1 MQSLGQNEASLAC---PQGCCPTSLLFNPPPPPPQSQNTTAKPRNSSAECRHSFAATTAS 57
Query: 57 SIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFG 116
SIFP+T+FTNHESLPSL +S +EF K YPQY +T Q+D +RAKEYY LS SN +CLDY G
Sbjct: 58 SIFPNTKFTNHESLPSLHESFSEFKKVYPQYSETDQVDHVRAKEYYHLSFSNQSCLDYIG 117
Query: 117 IGLFSYNQL-HKQESSPSHL-RPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA 174
IGLFSY Q H ++S + L S P + +IPFFS+SYKTGNLKT LLHGGQES ESA
Sbjct: 118 IGLFSYYQRQHHHDTSKTQLASSSTPQYSDNIPFFSISYKTGNLKTLLLHGGQESEFESA 177
Query: 175 MKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRT 234
M++RIM FLNIS+NDY MVFTANRTSAFKL+A+SYPF S K LLTVYDYESEAVEAMI
Sbjct: 178 MRRRIMKFLNISDNDYFMVFTANRTSAFKLVADSYPFQSSKKLLTVYDYESEAVEAMISC 237
Query: 235 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARYPYLW 293
SEKRGA+ MSAEFSWPRLRI S KLRK++VSK KK K++ GLFVFPLHSR+TGARY YLW
Sbjct: 238 SEKRGAKAMSAEFSWPRLRIRSTKLRKIIVSKRKKNKKKRGLFVFPLHSRVTGARYAYLW 297
Query: 294 MRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST 353
M IAQEN WH+L+DACALGPKDMDSFGLSL +PDFLICSFY++FGENPSGFGCLFVKKS
Sbjct: 298 MSIAQENGWHVLLDACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSA 357
Query: 354 VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 413
+ L ++ +G+V+L+P + L +++ S + +P S +++++++ ++FSG I+
Sbjct: 358 ISTLESSSCAGIVNLVPERLLLQPSEDKHSSKQKP--LSILQEQELSSLSSFSG--RIQT 413
Query: 414 RQSGKLEQGEISEVR-----------------RAEADSIQQKNANTNG-GGGSEIECRGL 455
Q+ K+EQ E+SE++ + +S+Q K A +G GG IECR L
Sbjct: 414 SQAIKVEQ-ELSELQIIAAPAKPKEGSGSVEAKGPVESLQSKKAQDSGENGGFNIECRCL 472
Query: 456 DQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVF 515
DQVDSLGL MI+ R R LINWLVN++MKL+HPN EG LVKIYGPK++FDRGPALAFNVF
Sbjct: 473 DQVDSLGLIMITNRTRYLINWLVNSMMKLKHPNAEGVPLVKIYGPKVKFDRGPALAFNVF 532
Query: 516 DWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 575
DWK EK+EPVLVQKLADR NISLSYG LHHIWF+DKY ++K VL+ + + + N +
Sbjct: 533 DWKGEKVEPVLVQKLADRNNISLSYGFLHHIWFADKYAEDKGKVLQTKEGRVQGVTTNKK 592
Query: 576 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 632
KD+ LG+TVVTA+L +LANFEDVY+LW FVA+FLDADFVEK RWRYTAL+QKTIEV
Sbjct: 593 KDRDELGVTVVTAALSFLANFEDVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 649
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444119|ref|XP_003592337.1| Molybdenum cofactor sulfurase [Medicago truncatula] gi|355481385|gb|AES62588.1| Molybdenum cofactor sulfurase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/635 (63%), Positives = 482/635 (75%), Gaps = 25/635 (3%)
Query: 19 GCCPSPFFSLSPDPLHK--VSKSRNTSADCRRDFAAVTASSIFPDTQFTNHESLPSLQQS 76
GCCP+ F S H +K RN+S+ CR+ FA+ T+SSIFP+T+FTNHESLPSL +S
Sbjct: 13 GCCPTLLFIKSSQQSHNNSTTKPRNSSSHCRQTFAS-TSSSIFPNTKFTNHESLPSLHES 71
Query: 77 LTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQE------S 130
TEF K YPQ+ +T +ID +RAKEYY LS N +CLDY GIGLFSY Q + + S
Sbjct: 72 FTEFIKVYPQFSETEKIDSLRAKEYYHLSFLNQSCLDYIGIGLFSYYQRQQHDASKTQFS 131
Query: 131 SPSHLRP-SLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND 189
SPS P P Q DIPFFS+SYKTGNLKT LLHGG+ES ESAM+KRIM FLNISEND
Sbjct: 132 SPSTSTPFQSPQQYSDIPFFSISYKTGNLKTLLLHGGKESEFESAMRKRIMKFLNISEND 191
Query: 190 YGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSW 249
Y MVFTANRTSAFKL+A+SYPF S K LLTVYDYESEAVEAMI TSE RGA+ MSAEFSW
Sbjct: 192 YFMVFTANRTSAFKLVADSYPFQSCKKLLTVYDYESEAVEAMISTSENRGAKSMSAEFSW 251
Query: 250 PRLRINSEKLRKMVVSKGK---KKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILI 306
PRLRI S KL+KM+VS KK+ GLFVFPLHSR+TGARYPYLWMR AQEN WH+LI
Sbjct: 252 PRLRIQSTKLKKMIVSDNSKKKIKKKNGLFVFPLHSRVTGARYPYLWMRTAQENGWHVLI 311
Query: 307 DACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMV 366
DACALGPKDMDSFGLSL +PDFLICSFY++FGENPSGFGCLFVKKS++ IL +T +G+V
Sbjct: 312 DACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSSISILESSTCAGIV 371
Query: 367 SLLPAKKQLWLTDEFSSCETEPEQTSKS----KQEKVAATNTFSG----PMSIEMRQSGK 418
+L+P Q L+++ SSC + KS ++++++A ++FSG P +++ K
Sbjct: 372 NLVPESTQFNLSED-SSCNNQVGIGQKSPSILQEQELSALSSFSGRMQTPQFVKVEADPK 430
Query: 419 LEQG-EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477
G E E R E + Q K + IECR LDQVDSLGLT+I+ RGR LINWL
Sbjct: 431 APLGSETMEARVVENN--QVKTVQDSKNESFNIECRCLDQVDSLGLTLITNRGRYLINWL 488
Query: 478 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENIS 537
VN+L+KL+HPN EG LVKIYGPKIRFDRGPALAFNV+DWK EK+EPVLVQKLADR NIS
Sbjct: 489 VNSLLKLKHPNDEGVPLVKIYGPKIRFDRGPALAFNVYDWKGEKVEPVLVQKLADRNNIS 548
Query: 538 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFE 597
LSYG LHHIWF+DKY + K VL+ + + N +KD+ +LG+TVVTA+L +LANFE
Sbjct: 549 LSYGFLHHIWFADKYSEGKGRVLQTKEGRGEKVMVNKKKDRDDLGVTVVTAALSFLANFE 608
Query: 598 DVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 632
DVY+LW FVA+FLDADFVEK RWRYTAL+QKTIEV
Sbjct: 609 DVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 643
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574465|ref|XP_003555367.1| PREDICTED: uncharacterized protein LOC100820534 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/652 (62%), Positives = 494/652 (75%), Gaps = 34/652 (5%)
Query: 10 SQACLCTHGGCCPSPFF-----SLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFPDTQF 64
++A L GCCP+ + +K RN+SA+CR FAA TASSIFP+T+F
Sbjct: 7 NEASLACPHGCCPTSLLFNPPPPPPLQTQNTTTKPRNSSAECRHSFAATTASSIFPNTKF 66
Query: 65 TNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQ 124
TNHESLPSL +S +EF K YPQY +T Q+D +R KEYY LS SN +CLDY GIGLFSY Q
Sbjct: 67 TNHESLPSLHESFSEFKKVYPQYSETDQVDHVRDKEYYHLSFSNQSCLDYIGIGLFSYYQ 126
Query: 125 L-HKQESSPSHLRPSLPSQNL-----DIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR 178
H ++S + L S + +IPFFS+SYKTGNLKT LLHGGQES ESAM++R
Sbjct: 127 RQHHHDTSKTQLASSSTPPSPPQYSDNIPFFSISYKTGNLKTLLLHGGQESEFESAMRRR 186
Query: 179 IMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKR 238
IM FLNISENDY MVFTANRTSAFKL+A+SYPF S K LLTVYDYESEAVEAMI SE+R
Sbjct: 187 IMKFLNISENDYFMVFTANRTSAFKLVADSYPFQSSKKLLTVYDYESEAVEAMISCSERR 246
Query: 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQ 298
GA+ MSAEFSWPRLRI S KLRKM+VSK KKKK+RGLFVFPLHSR+TGARYPYLWM IAQ
Sbjct: 247 GAKAMSAEFSWPRLRIQSTKLRKMIVSKRKKKKKRGLFVFPLHSRVTGARYPYLWMSIAQ 306
Query: 299 ENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358
EN WH+LIDACALGPKDMDSFGLSL +PDFLICSFY++FGENPSGFGCLFVKKS + L
Sbjct: 307 ENGWHVLIDACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSAITTLE 366
Query: 359 DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 418
++ +G+V+L+P + L +++ S + +P S +++ +++ ++FSG I+ Q+ K
Sbjct: 367 SSSCAGIVNLVPDRLLLHPSEDKDSSKQKP--LSILQEQDLSSLSSFSG--RIQTSQAIK 422
Query: 419 LEQGEISEVR-------------RAEA----DSIQQKNA-NTNGGGGSEIECRGLDQVDS 460
+EQ E+SE++ R EA +S+Q K A + + GG I+CR LDQVDS
Sbjct: 423 VEQ-ELSELQIIAAPAKPKQGSGRVEAKGPVESLQSKKAQDGSENGGFNIDCRCLDQVDS 481
Query: 461 LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE 520
LGL MI+ R R LINWLVN++MKL+HPN EG LVKIYGPK++FDRGPALAFNVFDWK E
Sbjct: 482 LGLIMITNRTRYLINWLVNSMMKLKHPNAEGVPLVKIYGPKVKFDRGPALAFNVFDWKGE 541
Query: 521 KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580
K+EPVLVQKLADR NISLSYG LHHIWF+DKY ++K VL+ + + N +KD+
Sbjct: 542 KVEPVLVQKLADRNNISLSYGFLHHIWFADKYAEDKGKVLQTKEGRVQGVITNKKKDRDK 601
Query: 581 LGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 632
LG+TVVTA+L +LANFEDVY+LW FVA+FLDADFVEK RWRYTAL+QKTIEV
Sbjct: 602 LGVTVVTAALSFLANFEDVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 653
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426751|ref|XP_002275855.1| PREDICTED: uncharacterized protein LOC100265017 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/660 (58%), Positives = 486/660 (73%), Gaps = 36/660 (5%)
Query: 1 MQSPCLREVSQACLCTHGGCCPS--PFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSI 58
M SPC+RE S+AC GCC + P F PDP K+ +++A R +FA T SS+
Sbjct: 1 MHSPCIRETSEACF---QGCCLASLPGF---PDPHGTDPKNLSSAAVSRYNFALTTVSSL 54
Query: 59 FPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIG 118
FP+TQFTNHESLP L +S + F KAYPQY +T Q DQIRA+EYY LS+SNH CLDY G G
Sbjct: 55 FPNTQFTNHESLPPLDESFSSFNKAYPQYSNTNQADQIRAQEYYHLSMSNHVCLDYIGHG 114
Query: 119 LFSYNQLHKQESSPSHLRPS------LPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLE 172
LFSY+QL + S L +L++PFF +SYK+ NL +Q+L+GG+ES LE
Sbjct: 115 LFSYSQLQSHHMTAPVPSSSSSSAPSLNFSSLELPFFEISYKSVNLNSQILYGGEESELE 174
Query: 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMI 232
S ++KRIMDF+NISE DY MVFTAN++SAFKLLA+ YPF S +NLLTVYDYE+EAV AMI
Sbjct: 175 SKIRKRIMDFMNISEADYSMVFTANQSSAFKLLADFYPFQSNQNLLTVYDYENEAVGAMI 234
Query: 233 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL 292
R S+KR ARV+SAEFSWP LRI+S KL+K++++K +KK+RGLFVFPL SRMTGARY YL
Sbjct: 235 RASKKRSARVLSAEFSWPNLRIHSAKLKKIILNK--RKKRRGLFVFPLQSRMTGARYSYL 292
Query: 293 WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352
WM +AQEN WH+L+DACALGPKDM++ GLSL RPDFLICSF+++FG+NPSGFGCLFVKKS
Sbjct: 293 WMSMAQENGWHVLLDACALGPKDMETLGLSLFRPDFLICSFFKVFGKNPSGFGCLFVKKS 352
Query: 353 TVPILVDNTSS---GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK--VAATNTFSG 407
+ IL D+T++ G+VSLLPA ++ DE ++ + E EQTSK K K + A ++ SG
Sbjct: 353 SASILKDSTTAVSVGIVSLLPATRRSQFPDESATTDIETEQTSKLKLHKGELPAASSLSG 412
Query: 408 PMSIEMRQSGKLEQGEISEVRRAEA--------------DSIQQKNANTNGGGGSEIECR 453
P+ ++ + E EIS+V + D Q N +++ G S+IECR
Sbjct: 413 PLPVQKISNETFESYEISDVNFKQKGSSSSEIVELEMPLDIPQSLNKDSSVNGYSQIECR 472
Query: 454 GLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE-GNALVKIYGPKIRFDRGPALAF 512
GLD DSLGL +IS R R LINWLVNALM L+HP++E G LV+IYGP + FDRGPA+AF
Sbjct: 473 GLDHADSLGLILISLRARFLINWLVNALMSLRHPHSENGLPLVRIYGPNVAFDRGPAVAF 532
Query: 513 NVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD 572
NVFDWK EK+EP LVQKLADR NISLS+G L HIWFSDKY++EK+ +LE +
Sbjct: 533 NVFDWKGEKVEPTLVQKLADRSNISLSHGFLQHIWFSDKYEEEKEKILELRTIGVEGTLG 592
Query: 573 NNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 632
N ++DK++ GI+VV+A+LG L NFEDVY LWAFV++FLDADFVEK RWRY AL+QKT+EV
Sbjct: 593 NKKRDKSSSGISVVSAALGLLTNFEDVYNLWAFVSRFLDADFVEKERWRYVALNQKTVEV 652
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451789|ref|XP_004143643.1| PREDICTED: molybdenum cofactor sulfurase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/637 (60%), Positives = 477/637 (74%), Gaps = 24/637 (3%)
Query: 1 MQSPCLREVSQACLCTHGGCC---PSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASS 57
M SPCL E+S AC GG P+P + P + + TSA RRDFAA ++
Sbjct: 1 MPSPCLTEISAACGGGSGGGSSCCPTPLLNF-PSSQPSTTATPRTSAASRRDFAAKASAG 59
Query: 58 IFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGI 117
+FP+T FTN E LPS Q+L+ F A+PQY T +ID IR ++YY L+LSNH CLDY GI
Sbjct: 60 VFPNTTFTNPECLPSPPQALSLFLAAFPQYSQTQEIDAIRNRQYYHLNLSNHICLDYIGI 119
Query: 118 GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKK 177
GLFSY+Q K H P PS NL+ PFF VSY+TGNLK++LL G +S LESA+K+
Sbjct: 120 GLFSYHQFQK------HSNP-FPSSNLNFPFFGVSYRTGNLKSRLLENGLDSDLESAIKR 172
Query: 178 RIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEK 237
RI FLN+SE+DY M+FTANRTSAFKLLAESYPF + +LTVYDYESEAVEAM+ +S+
Sbjct: 173 RIFRFLNVSESDYAMIFTANRTSAFKLLAESYPFQTSNKVLTVYDYESEAVEAMVSSSQN 232
Query: 238 RGARVMSAEFSWPRLRINSEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPYLWMRI 296
RGA MSAEFSWPRLRINS KL++M+VS KKK ++GLFVFPLHSR+TGARYPYLWM I
Sbjct: 233 RGATTMSAEFSWPRLRINSRKLKEMIVSKNKKKKTKKGLFVFPLHSRITGARYPYLWMSI 292
Query: 297 AQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPI 356
AQEN WH+L+DACALGPKDMD FGLSL RPDFL+ SFY++FGENPSGFGCL VKKS + I
Sbjct: 293 AQENRWHVLVDACALGPKDMDCFGLSLFRPDFLVSSFYKVFGENPSGFGCLLVKKSVISI 352
Query: 357 LVDNTSS---GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 413
L N+SS G+V+L+PA K L L ++ S + + E +Q+ V +T++FSGP+S ++
Sbjct: 353 LETNSSSSNVGIVNLVPADKLLQLNEDSSGTDIDLE---FQQQQMVPSTSSFSGPISHQI 409
Query: 414 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473
++ E+ E ++ ++ + + + E +C+GLDQVDSLGL +IS R RCL
Sbjct: 410 SKTTTTNFPEMDEEGKSRSNVSEIEIVSNR----YETKCKGLDQVDSLGLVLISTRARCL 465
Query: 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADR 533
INWLV++L+KL+HPN++G LVKIYGPK++FDRGPALAFNVFDWK EK+EPVLVQKLADR
Sbjct: 466 INWLVSSLLKLKHPNSQGVCLVKIYGPKVKFDRGPALAFNVFDWKGEKVEPVLVQKLADR 525
Query: 534 ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL 593
NISLSYG LH+I FSDKY +EK VLE+ +E N +K K NLGI+VVTA+LG+L
Sbjct: 526 SNISLSYGFLHNICFSDKYGEEKGKVLER--KEFGKDEKNMKKSKGNLGISVVTAALGFL 583
Query: 594 ANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTI 630
NFEDVY+LW+FVAQFLDADFVEK RWRYTAL+Q+TI
Sbjct: 584 TNFEDVYKLWSFVAQFLDADFVEKERWRYTALNQRTI 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449506487|ref|XP_004162763.1| PREDICTED: molybdenum cofactor sulfurase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/637 (59%), Positives = 476/637 (74%), Gaps = 24/637 (3%)
Query: 1 MQSPCLREVSQACLCTHGGCC---PSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASS 57
M SPCL E+S AC GG P+P + P + + TSA RRDFAA ++
Sbjct: 1 MPSPCLTEISAACGGGSGGGSSCRPTPLLNF-PSSQPSTTATPRTSAASRRDFAAKASAG 59
Query: 58 IFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGI 117
+FPDT FTN E LPS Q+L+ F A+PQY T +ID IR ++Y+ L+LSNH CLDY GI
Sbjct: 60 VFPDTTFTNPECLPSPPQALSLFLAAFPQYSQTQEIDAIRNRQYHHLNLSNHICLDYIGI 119
Query: 118 GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKK 177
GLFSY+Q K H P PS L+ PFF VSY+TGNLK++LL G +S LESA+K+
Sbjct: 120 GLFSYHQFQK------HSNP-FPSSTLNFPFFGVSYRTGNLKSRLLENGLDSDLESAIKR 172
Query: 178 RIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEK 237
RI FLN+SE+DY M+FTANRTSAFKLLAESYPF + +LTVYDYESEAVEAM+ +S+
Sbjct: 173 RIFRFLNVSESDYAMIFTANRTSAFKLLAESYPFQTSNKVLTVYDYESEAVEAMVSSSQN 232
Query: 238 RGARVMSAEFSWPRLRINSEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPYLWMRI 296
RGA MSAEFSWPRLRINS KL++M+VS KKK ++GLFVFPLHSR+TGARYPYLWM I
Sbjct: 233 RGATTMSAEFSWPRLRINSRKLKEMIVSKNKKKKTKKGLFVFPLHSRITGARYPYLWMSI 292
Query: 297 AQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPI 356
AQEN WH+L+DACALGPKDMD FGLSL RPDFL+ SFY++FGENPSGFGCL VKKS + I
Sbjct: 293 AQENRWHVLVDACALGPKDMDCFGLSLFRPDFLVSSFYKVFGENPSGFGCLLVKKSVISI 352
Query: 357 LVDNTSS---GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 413
L N+SS G+V+L+PA K L L ++ S + + E +Q+ V +T++FSGP+S ++
Sbjct: 353 LETNSSSSNVGIVNLVPADKLLQLNEDSSGTDIDLE---FQQQQMVPSTSSFSGPISHQI 409
Query: 414 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473
++ E+ E ++ ++ + + + E +C+GLDQVDSLGL +IS R RCL
Sbjct: 410 SKTTTTNFPEMDEEGKSRSNVSEIEIVSNR----YETKCKGLDQVDSLGLVLISTRARCL 465
Query: 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADR 533
INWLV++L+KL+HPN++G LVKIYGPK++FDRGPALAFNVFDWK EK+EPVLVQKLADR
Sbjct: 466 INWLVSSLLKLKHPNSQGVCLVKIYGPKVKFDRGPALAFNVFDWKGEKVEPVLVQKLADR 525
Query: 534 ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL 593
NISLSYG LH+I FSDKY +EK VLE+ +E N +K K NLGI+VVTA+LG+L
Sbjct: 526 SNISLSYGFLHNICFSDKYGEEKGKVLER--KEFGKDEKNMKKSKGNLGISVVTAALGFL 583
Query: 594 ANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTI 630
NFEDVY+LW+FVAQFLDADFVEK RWRYTAL+Q+TI
Sbjct: 584 TNFEDVYKLWSFVAQFLDADFVEKERWRYTALNQRTI 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529304|ref|XP_003533235.1| PREDICTED: molybdenum cofactor sulfurase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/613 (60%), Positives = 461/613 (75%), Gaps = 21/613 (3%)
Query: 38 KSRNTSADCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIR 97
K RN+SA+ R FA T SSIFP+TQFTNHESLPSL +S EFTKAY QY +T Q+D +R
Sbjct: 37 KIRNSSAEWRHSFAVTTTSSIFPNTQFTNHESLPSLHESFNEFTKAYTQYSETEQVDHVR 96
Query: 98 AKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESS----PSHLRPSLPSQNLDIPFFSVSY 153
AK+Y LSLSN TCLDY GIGLFSY+QL E+S PS P P DIPFFS+S
Sbjct: 97 AKDYSHLSLSNQTCLDYIGIGLFSYSQLQHHETSKGQVPSSSIPQTPPNYSDIPFFSLSC 156
Query: 154 KTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMS 213
KTG+LKT LLHGGQ++ E+AM+KRIM FLN+SENDY MVFTANRTSAFKL+A+SY F +
Sbjct: 157 KTGSLKTLLLHGGQDTEFEAAMRKRIMSFLNVSENDYFMVFTANRTSAFKLVADSYQFQT 216
Query: 214 VKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS-KGKKKKQ 272
+ LLTVYDYESEAVE MI +SEKRGAR MSAEFSWPRLRI + KLRKM+ S + KKKK+
Sbjct: 217 SRRLLTVYDYESEAVEVMISSSEKRGARAMSAEFSWPRLRIQTTKLRKMIESKRKKKKKR 276
Query: 273 RGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS 332
+GLFV PL SR+TGA+YPYLWM IAQE WH+L+DACALGPKDMD FGLSL +PDFLICS
Sbjct: 277 KGLFVLPLSSRVTGAKYPYLWMSIAQEIGWHVLVDACALGPKDMDCFGLSLFQPDFLICS 336
Query: 333 FYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392
FY++FGENPSGFGCLF+KKS + L S+G+V+L+P K+ L+D+ S + E +
Sbjct: 337 FYKVFGENPSGFGCLFIKKSAISSLESYPSAGIVNLVPEKQPHQLSDDSSGTDLELKNKP 396
Query: 393 KS---KQEKVAATNTFSGPMSIEMRQSGKLEQGE----------ISEVRRAEADSIQQKN 439
+EK+ + FSGPM + +QS +E+GE SE+ + +++Q
Sbjct: 397 SPACLHEEKLFPLSYFSGPM--QTKQSEIVEEGEPPDSKLKAPQCSEIEEVQQEAVQNLK 454
Query: 440 ANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYG 499
++ ++I+CR LDQVDSLGL +I+ R R LINWLVN++ KL+HPNT+G LVKIYG
Sbjct: 455 KSSK-VEETDIQCRCLDQVDSLGLILITNRSRYLINWLVNSMRKLKHPNTQGVHLVKIYG 513
Query: 500 PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559
PK++FDRGPALAFN++DWK E++EP LVQKLADR NIS+SY LHHIWF+DKY +EK V
Sbjct: 514 PKVKFDRGPALAFNIYDWKGERVEPALVQKLADRSNISISYAFLHHIWFADKYAEEKGKV 573
Query: 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKAR 619
L+ + K ++GI+VVTA+LG+LANFEDVY+LWAFVA+FLDADFVEK R
Sbjct: 574 LQTKVVGGQEGVMTTTNKKDSVGISVVTAALGFLANFEDVYKLWAFVARFLDADFVEKER 633
Query: 620 WRYTALDQKTIEV 632
WRY A++QK +EV
Sbjct: 634 WRYIAINQKIVEV 646
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 632 | ||||||
| TAIR|locus:2166523 | 570 | AT5G51920 [Arabidopsis thalian | 0.588 | 0.652 | 0.541 | 7.3e-152 | |
| TAIR|locus:2158088 | 870 | AT5G66950 [Arabidopsis thalian | 0.523 | 0.380 | 0.439 | 5.7e-107 | |
| TAIR|locus:2115179 | 896 | AT4G37100 [Arabidopsis thalian | 0.558 | 0.393 | 0.418 | 1.9e-104 | |
| TAIR|locus:2046837 | 895 | AT2G23520 [Arabidopsis thalian | 0.618 | 0.436 | 0.375 | 2.2e-101 | |
| TAIR|locus:2127253 | 559 | AT4G22980 "AT4G22980" [Arabido | 0.582 | 0.658 | 0.393 | 1.2e-77 | |
| UNIPROTKB|F1SAI5 | 889 | LOC100621611 "Uncharacterized | 0.123 | 0.087 | 0.380 | 2.6e-14 | |
| UNIPROTKB|Q96EN8 | 888 | MOCOS "Molybdenum cofactor sul | 0.123 | 0.087 | 0.326 | 4.8e-14 | |
| UNIPROTKB|F1N3A9 | 849 | MOCOS "Molybdenum cofactor sul | 0.302 | 0.224 | 0.267 | 4.6e-13 | |
| UNIPROTKB|G3N1I0 | 882 | MOCOS "Molybdenum cofactor sul | 0.302 | 0.216 | 0.267 | 5.1e-13 | |
| UNIPROTKB|Q9N0E7 | 882 | MOCOS "Molybdenum cofactor sul | 0.302 | 0.216 | 0.267 | 5.1e-13 |
| TAIR|locus:2166523 AT5G51920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 7.3e-152, Sum P(2) = 7.3e-152
Identities = 207/382 (54%), Positives = 261/382 (68%)
Query: 15 CTHGGCCXXXXXXXXXXXXHKVSKSRN-TSADCRRDFAAVTASSIFPDTQFTNHESLPSL 73
C HG C H + TSA RR+FA T S+IFPDT+FT+ SLPS
Sbjct: 14 CLHG-CFSSSPFHGTTSSEHPPHSTPTVTSATLRRNFAQTTVSTIFPDTEFTDPNSLPSH 72
Query: 74 QQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQEXXXX 133
Q+S ++F +AYP Y DTY+ID++R+ Y+ L LS++TCLDY GIGL+SY+QL +
Sbjct: 73 QESFSDFIQAYPNYSDTYKIDRLRSDHYFHLGLSHYTCLDYIGIGLYSYSQLLNYDPSTY 132
Query: 134 XXXXXXXXQNLDIPFFSVSYKTGNLKTQLLH-GGQESGLESAMKKRIMDFLNISENDYGM 192
+ PFFSVS K GNLK +LL+ GGQE+ E +MK+RIM FL ISE DY M
Sbjct: 133 QISSSLS----ESPFFSVSPKIGNLKEKLLNDGGQETEFEYSMKRRIMGFLKISEEDYSM 188
Query: 193 VFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRL 252
VFTANRTSAF+L+AESYPF S + LLTVYDYESEAV + R SEKRGA+V +AEFSWPRL
Sbjct: 189 VFTANRTSAFRLVAESYPFNSKRKLLTVYDYESEAVSEINRVSEKRGAKVAAAEFSWPRL 248
Query: 253 RINSEXXXXXXXXXXXXXXXXXX--FVFPLHSRMTGARYPYLWMRIAQENDWHILIDACA 310
++ S +VFPLHSR+TG+RYPYLWM +AQEN WH++IDAC
Sbjct: 249 KLCSSKLRKLVTAGKNGSKTKKKGIYVFPLHSRVTGSRYPYLWMSVAQENGWHVMIDACG 308
Query: 311 LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLP 370
LGPKDMDSFGLS+ PDF++CSFY++FGENPSGFGCLFVKKST+ IL +T GM++L+P
Sbjct: 309 LGPKDMDSFGLSIYNPDFMVCSFYKVFGENPSGFGCLFVKKSTISILESSTGPGMINLVP 368
Query: 371 AKKQLWLTD-EFSSCETEPEQT 391
+ L E + +T+ E+T
Sbjct: 369 TDNPISLHALEINRTQTDSEET 390
|
|
| TAIR|locus:2158088 AT5G66950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
Identities = 157/357 (43%), Positives = 223/357 (62%)
Query: 36 VSKSRNTSA-DCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQID 94
+ +SR+ + + +R+F + A+S+ F + E+LP L+++LT F YP+Y + ++D
Sbjct: 75 LGRSRSLARLNAQREF--LRATSLAAQRAFESEETLPELEEALTIFLTMYPKYQSSEKVD 132
Query: 95 QIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQEXXXXXXXXXXXXQNLDIPFFSVSYK 154
++R EY+ LSL CLDY G GLFSY Q D FS+S
Sbjct: 133 ELRNDEYFHLSLPK-VCLDYCGFGLFSYLQ---------------TVHYWDTCTFSLSEI 176
Query: 155 TGNLKTQLLHGGQESG-LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMS 213
+ NL ++GG E G +E +K RIMD+LNI EN+YG+VFT +R SAFKLLAESYPF +
Sbjct: 177 SANLSNHAIYGGAEKGSIEHDIKIRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 236
Query: 214 VKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXX 273
K LLT++D+ES++V M + ++++GA+V SA F WP LR+ S
Sbjct: 237 NKKLLTMFDHESQSVSWMGQCAKEKGAKVGSAWFKWPTLRLCSMDLKKEILSKKKRKKDS 296
Query: 274 XX--FVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC 331
FVFP+ SR+TG++Y Y WM +AQ+N+WH+L+DA ALGPKDMDS GLSL RPDF+I
Sbjct: 297 ATGLFVFPVQSRVTGSKYSYQWMALAQQNNWHVLLDAGALGPKDMDSLGLSLFRPDFIIT 356
Query: 332 SFYQIFGENPSGFGCLFVKKSTVPILVDN---TSSGMVSLLPAKKQLWLTDEFSSCE 385
SFY++FG +P+GFGCL +KKS + L TSSG+V + P + L+L+D E
Sbjct: 357 SFYRVFGYDPTGFGCLLIKKSVISCLQSQSGKTSSGIVKITP-EYPLYLSDSMDGLE 412
|
|
| TAIR|locus:2115179 AT4G37100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 1.9e-104, Sum P(2) = 1.9e-104
Identities = 162/387 (41%), Positives = 229/387 (59%)
Query: 36 VSKSRNTSA-DCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQID 94
+ +SR+ + +R+F TA + + + +S+P L+++LT+F YP+Y + +ID
Sbjct: 79 LGRSRSLARLHAQREFLRATA--LAAERIIESEDSIPELREALTKFLSMYPKYQASEKID 136
Query: 95 QIRAKEYYQLSLS-NHTCLDYFGIGLFSYNQ-LHKQEXXXXXXXXXXXXQNLDIPFFSVS 152
Q+R+ EY LS S + CLDY G GLFSY Q LH + FS+S
Sbjct: 137 QLRSDEYSHLSSSASKVCLDYCGFGLFSYVQTLHYWDTCT----------------FSLS 180
Query: 153 YKTGNLKTQLLHGGQESG-LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPF 211
T NL L+GG ESG +E +K RIMD+LNI EN+YG+VFT +R SAF+LLAESYPF
Sbjct: 181 EITANLSNHALYGGAESGTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFRLLAESYPF 240
Query: 212 MSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXX 271
S K LLT++D+ES++V M +T+ ++GA+ +A F WP L++ S
Sbjct: 241 QSNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSYKKRKKK 300
Query: 272 XXXX--FVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL 329
FVFP SR+TG +Y Y WM +AQ+N WH+L+DA +LGPKDMDS GLSL RP+F+
Sbjct: 301 DSAVGLFVFPAQSRVTGTKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPEFI 360
Query: 330 ICSFYQIFGENPSGFGCLFVKKSTVPILVDN---TSSGMVSLLPAKKQLWLTDEFSSCET 386
I SFY++FG +P+GFGCL +KKS + L T SG+V + P + L+L+D +
Sbjct: 361 ITSFYRVFGHDPTGFGCLLIKKSVMGSLQSQSGKTGSGIVKITP-EYPLYLSDSVDGLDG 419
Query: 387 ----EPEQTSKSKQEKVAATN--TFSG 407
E K+K+ T FSG
Sbjct: 420 LVGFEDHNDDKTKEAHRPGTQMPAFSG 446
|
|
| TAIR|locus:2046837 AT2G23520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 2.2e-101, Sum P(2) = 2.2e-101
Identities = 160/426 (37%), Positives = 242/426 (56%)
Query: 36 VSKSRNTSA-DCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQID 94
+ +SR+ + +R+F TA + + F + + +P L ++ +F YP++ + ++D
Sbjct: 77 LGRSRSLARLHAQREFLRATA--LAAERAFESEDDIPELLEAFNKFLTMYPKFETSEKVD 134
Query: 95 QIRAKEYYQLSLSNHTCLDYFGIGLFSYNQ-LHKQEXXXXXXXXXXXXQNLDIPFFSVSY 153
Q+R+ EY L L + CLDY G GLFSY Q LH + FS+S
Sbjct: 135 QLRSDEYGHL-LDSKVCLDYCGFGLFSYVQTLHYWDSCT----------------FSLSE 177
Query: 154 KTGNLKTQLLHGGQESG-LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFM 212
T NL L+GG E G +E +K RIMD+LNI E++YG+VFT +R SAF+LLAESYPF
Sbjct: 178 ITANLSNHALYGGAEIGTVEHDLKTRIMDYLNIPESEYGLVFTGSRGSAFRLLAESYPFH 237
Query: 213 SVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXX 272
+ K LLT++D+ES++V M +T+ ++GA+ +A F WP L++ S
Sbjct: 238 TNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSHKKRKKKD 297
Query: 273 XXX--FVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI 330
FVFP SR+TG++Y Y WM +AQ+N+WH+L+DA +LGPKDMDS GLSL RP+F+I
Sbjct: 298 SAVGLFVFPAQSRVTGSKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPEFII 357
Query: 331 CSFYQIFGENPSGFGCLFVKKSTVPILVDN---TSSGMVSLLPAKKQLWLTDEFSSCETE 387
SFY++FG +P+GFGCL +KKS + L T SG+V + P + L+L+D +
Sbjct: 358 TSFYKVFGHDPTGFGCLLIKKSVMGNLQSQSGKTGSGIVKITP-QYPLYLSDSIDGLDGL 416
Query: 388 ---PEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNG 444
+ + +K A T+ + + SG ++ +V E D ++ NA+
Sbjct: 417 VGLEDHDIGTNGDKPATTDAARRGAQMPVF-SGAYTSAQVRDV--FETDLLED-NASDRD 472
Query: 445 GGGSEI 450
G S I
Sbjct: 473 GTSSTI 478
|
|
| TAIR|locus:2127253 AT4G22980 "AT4G22980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 155/394 (39%), Positives = 222/394 (56%)
Query: 49 DFAAVTASSIF--PDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSL 106
+F+ T + F +T+FT+ ESLP L+ S + A+P Y T Q D +R+ EY LS
Sbjct: 35 EFSVTTTGTSFLTRNTKFTSQESLPRLRTSFYDLITAFPDYLQTNQADHLRSTEYQNLSS 94
Query: 107 SNHTCLDYFGIG--LFSYNQLHKQEXXXXXXXXXXXXQNLDIPFFSVSYKTGNLKTQLLH 164
S+H FG LFSY+Q + +L+ ++S K + +LL
Sbjct: 95 SSHV----FGQQQPLFSYSQFRE---------ISESESDLNHSLLTLSCKQVSSGKELLS 141
Query: 165 GGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYE 224
+ES +S ++KRI F+N+ E++Y M+ T +R+SAFK++AE Y F + NLLTVY+YE
Sbjct: 142 FEEESRFQSRIRKRITSFMNLEESEYHMILTQDRSSAFKIVAELYSFKTNPNLLTVYNYE 201
Query: 225 SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXXXXFVFPLHSRM 284
EAVE MIR SEK+G + SAEFSWP I SE FVFPL S +
Sbjct: 202 DEAVEEMIRISEKKGIKPQSAEFSWPSTEILSEKLKRRITRSKRRGKRGL-FVFPLQSLV 260
Query: 285 TGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGEN-PSG 343
TGA Y Y WM +A+E++WH+L+D ALG KDM++ GLSL +PDFLICSF ++ G++ PSG
Sbjct: 261 TGASYSYSWMSLARESEWHVLLDTSALGSKDMETLGLSLFQPDFLICSFTEVLGQDDPSG 320
Query: 344 FGCLFVKKSTVPILVDN-TSSGMVSLLPAKKQL-WLTDEFSSCETEPEQTSKSKQEKVAA 401
FGCLFVKKS+ L + T+ ++ + A+ W T E+ + E + K A+
Sbjct: 321 FGCLFVKKSSSTALSEEPTNPENLTAVKAEPSWKWKT-EYQAGYNEITPVDH-EDHKAAS 378
Query: 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSI 435
T S +E+ S K ++ I ADS+
Sbjct: 379 T---SSSEIVEIESSVKQDKAMIEFQGLDHADSL 409
|
|
| UNIPROTKB|F1SAI5 LOC100621611 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 2.6e-14, Sum P(3) = 2.6e-14
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 276 FVFPLHSRMTGARYPYLW--------MR-IAQENDWHILIDACA-LGPKDMDSFGLSLVR 325
F +P S +G+RYP W MR ++ W++L+DA A +G +D LS+ +
Sbjct: 199 FCYPAQSNFSGSRYPLSWIGEVKSGQMRPVSAPGKWYVLLDAAAYVGTSPLD---LSVHQ 255
Query: 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357
DF+ SFY+IFG P+G G L V T P+L
Sbjct: 256 ADFVPISFYKIFGF-PTGLGALLVNNRTAPLL 286
|
|
| UNIPROTKB|Q96EN8 MOCOS "Molybdenum cofactor sulfurase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 4.8e-14, Sum P(4) = 4.8e-14
Identities = 30/92 (32%), Positives = 45/92 (48%)
Query: 276 FVFPLHSRMTGARYPYLWMR---------IAQENDWHILIDACA-LGPKDMDSFGLSLVR 325
F +P S +G RYP W+ ++ W +L+DA + + +D LS +
Sbjct: 198 FCYPAQSNFSGVRYPLSWIEEVKSGRLHPVSTPGKWFVLLDAASYVSTSPLD---LSAHQ 254
Query: 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357
DF+ SFY+IFG P+G G L V P+L
Sbjct: 255 ADFVPISFYKIFGF-PTGLGALLVHNRAAPLL 285
|
|
| UNIPROTKB|F1N3A9 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 57/213 (26%), Positives = 100/213 (46%)
Query: 157 NLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-- 214
N+ ++L H E ++ RI+ + S DY ++FT+ T+A KL+AE++P++S
Sbjct: 51 NISSKLTHDTVEQ-----VRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGP 105
Query: 215 KNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXXX 274
+ + + Y +++ +++ + A +S+ P ++E
Sbjct: 106 EGSGSCFCYLTDSHTSVVGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQPPHL 165
Query: 275 XFVFPLHSRMTGARYPYLWM--------RIAQE-NDWHILIDACA-LGPKDMDSFGLSLV 324
F +P S +G RYP W+ R A W +L+DA A +G +D LS+
Sbjct: 166 -FCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 221
Query: 325 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357
+ DF+ SFY+IFG P+G G L V +L
Sbjct: 222 QADFVPISFYKIFGF-PTGLGALLVNNRLAALL 253
|
|
| UNIPROTKB|G3N1I0 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 57/213 (26%), Positives = 100/213 (46%)
Query: 157 NLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-- 214
N+ ++L H E ++ RI+ + S DY ++FT+ T+A KL+AE++P++S
Sbjct: 84 NISSKLTHDTVEQ-----VRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGP 138
Query: 215 KNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXXX 274
+ + + Y +++ +++ + A +S+ P ++E
Sbjct: 139 EGSGSCFCYLTDSHTSVVGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQPPHL 198
Query: 275 XFVFPLHSRMTGARYPYLWM--------RIAQE-NDWHILIDACA-LGPKDMDSFGLSLV 324
F +P S +G RYP W+ R A W +L+DA A +G +D LS+
Sbjct: 199 -FCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 254
Query: 325 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357
+ DF+ SFY+IFG P+G G L V +L
Sbjct: 255 QADFVPISFYKIFGF-PTGLGALLVNNRLAALL 286
|
|
| UNIPROTKB|Q9N0E7 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 57/213 (26%), Positives = 100/213 (46%)
Query: 157 NLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-- 214
N+ ++L H E ++ RI+ + S DY ++FT+ T+A KL+AE++P++S
Sbjct: 84 NISSKLTHDTVEQ-----VRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGP 138
Query: 215 KNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXXX 274
+ + + Y +++ +++ + A +S+ P ++E
Sbjct: 139 EGSGSCFCYLTDSHTSVVGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQPPHL 198
Query: 275 XFVFPLHSRMTGARYPYLWM--------RIAQE-NDWHILIDACA-LGPKDMDSFGLSLV 324
F +P S +G RYP W+ R A W +L+DA A +G +D LS+
Sbjct: 199 -FCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 254
Query: 325 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357
+ DF+ SFY+IFG P+G G L V +L
Sbjct: 255 QADFVPISFYKIFGF-PTGLGALLVNNRLAALL 286
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 632 | |||
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 2e-18 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 3e-12 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 0.001 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 0.001 |
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-18
Identities = 77/310 (24%), Positives = 137/310 (44%), Gaps = 54/310 (17%)
Query: 74 QQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPS 133
+ L EF Y ID++RA E+ +L + LD+ G L+S +QL
Sbjct: 2 ESFLKEFGGYYGYPDGPKPIDELRATEFARLKGVVY--LDHAGATLYSESQL-------- 51
Query: 134 HLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMV 193
+ F S Y GN +Q + S + +++++++ N +DY V
Sbjct: 52 --------EAALADFSSNVY--GNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACV 101
Query: 194 FTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRT-SEKRGARVMSAEFSWPRL 252
FT+ T+A KL+ E++P+ S + Y E+ IR + ++GA ++ +
Sbjct: 102 FTSGATAALKLVGETFPWSSESHFC--YTLENHNSVLGIREYALEKGAAAIAVDIEEAAN 159
Query: 253 RINSEKLRKMVVSKGKKKKQRG-------------LFVFPLHSRMTGARYPYLWMRIAQE 299
+ + + +V S+G +++ LF FP +GA++P +++ ++
Sbjct: 160 QPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKD 219
Query: 300 ND---------WHILIDA---CALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL 347
N W +L+DA C P D LS DF++ SFY+IFG P+G G L
Sbjct: 220 NQHSNFSKSGRWMVLLDAAKGCGTSPPD-----LSRYPADFVVVSFYKIFGY-PTGLGAL 273
Query: 348 FVKKSTVPIL 357
V++ +L
Sbjct: 274 LVRRDAAKLL 283
|
Length = 805 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 96/440 (21%), Positives = 149/440 (33%), Gaps = 119/440 (27%)
Query: 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKN---LLTVYDYESEAVEAMIRTSEK 237
FLN +D +VFT T A L+A +++ ++ S V +++
Sbjct: 77 RFLNADSSD-EIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIV-PWQELAKR 134
Query: 238 RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RI 296
GA+V ++ + L K++ K K L S +TG P + +
Sbjct: 135 TGAKVRVIPLD-DDGLLDLDALEKLITPKTK------LVALSHVSNVTGTVNPVKEIAEL 187
Query: 297 AQENDWHILIDAC-ALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355
A E+ +L+DA A G +D + + DFL S ++ P+G G L+V+K
Sbjct: 188 AHEHGALVLVDAAQAAGHLPID---VQELGCDFLAFSGHKWLL-GPTGIGVLYVRK---- 239
Query: 356 ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415
LL E EP G M +
Sbjct: 240 -----------ELLE--------------ELEP---------------FLGGG---GMIE 256
Query: 416 SGKLEQGEI--SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473
++G R EA + N G G L ++ G+ I R L
Sbjct: 257 YVSRDEGVTLAELPLRFEAGTP-----NIAGAIGLAAALDYLLEI---GMEAIEAHEREL 308
Query: 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADR 533
+L+ L +L V+IYGP DRG ++FNV + I P V L D
Sbjct: 309 TEYLLEGLSELPG--------VEIYGPP-DADRGGIVSFNV-----KGIHPHDVATLLDE 354
Query: 534 ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT-VVTASLGY 592
+ I++ G HH + LG+ + ASL
Sbjct: 355 KGIAVRAG--HHCA---------------------------QPLHRLLGVDATIRASLHL 385
Query: 593 LANFEDVYRLWAFVAQFLDA 612
EDV RL + + L
Sbjct: 386 YNTEEDVDRLLEALKKALAL 405
|
Length = 405 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 455 LDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNV 514
+D ++++GL I L + + L ++ P ++IYGP+ DRG ++FNV
Sbjct: 285 IDYLEAIGLENIEAHEHELTAYALERLGEI--PG------LRIYGPRDAEDRGGIISFNV 336
Query: 515 FDWKREKIEPVLVQKLADRENISLSYGSLHH 545
E + P V + D E I++ G HH
Sbjct: 337 -----EGVHPHDVGTILDEEGIAVRSG--HH 360
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 38/189 (20%), Positives = 84/189 (44%), Gaps = 34/189 (17%)
Query: 176 KKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKN----LLTVYDYESEAVE-A 230
++++ F+N + +D +VFT T + L+A S+ ++K +++ ++ + V
Sbjct: 68 REKVAKFIN-AASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQ 126
Query: 231 MIRTSEKRGARVMSAEFSWPRL----RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG 286
++ +E+ GA + L ++ + L K++ K K L S + G
Sbjct: 127 LL--AERTGAT-----LKFIPLDDDGTLDLDDLEKLLTEKTK------LVAITHVSNVLG 173
Query: 287 ARYPYLWM-RIAQENDWHILIDACAL---GPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342
P + ++A + +L+D P D+ + DF + S ++++G P+
Sbjct: 174 TVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDC-----DFYVFSGHKMYG--PT 226
Query: 343 GFGCLFVKK 351
G G L+ K+
Sbjct: 227 GIGVLYGKE 235
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 632 | |||
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 100.0 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.98 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.97 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.97 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.97 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.96 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.96 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.95 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 99.95 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.95 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.94 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.94 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.94 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.94 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.94 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.94 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.93 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.93 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.92 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.92 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.92 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.91 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.91 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.91 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.91 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.9 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.9 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.9 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.9 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.88 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.88 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.88 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.88 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.88 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.88 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.87 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.87 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.86 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.85 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.84 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.84 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.84 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.84 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.83 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.83 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.83 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.83 | |
| PLN02721 | 353 | threonine aldolase | 99.82 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.82 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.82 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.81 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.81 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.8 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.8 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.8 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.8 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.79 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.79 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.79 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.79 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.78 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.78 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.77 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.77 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.77 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.77 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.76 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.76 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.76 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.76 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.76 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.75 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.75 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.75 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.75 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.74 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.74 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.74 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.74 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.74 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.74 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.73 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.73 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.73 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.73 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.73 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.73 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.73 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.72 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.72 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.72 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.72 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.71 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.71 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.71 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.71 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.71 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.71 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.7 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.7 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.7 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.7 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.7 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.69 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.69 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.69 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.69 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.68 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.68 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.67 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.67 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.67 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.67 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.66 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.66 | |
| PLN02263 | 470 | serine decarboxylase | 99.66 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.66 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.66 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.66 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.65 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.65 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.65 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.65 | |
| PRK07324 | 373 | transaminase; Validated | 99.65 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.65 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.65 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.65 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.64 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.64 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.63 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.63 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.63 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.63 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.62 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.62 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.62 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.62 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.62 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.62 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.62 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.62 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.61 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.61 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.61 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.61 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.6 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.59 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.59 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.59 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.59 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.59 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.59 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.58 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.58 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.57 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.57 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.57 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.57 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.56 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.55 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.55 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.55 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.54 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.54 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.54 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.53 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.53 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.53 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.52 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.52 | |
| PLN02187 | 462 | rooty/superroot1 | 99.51 | |
| PLN02656 | 409 | tyrosine transaminase | 99.5 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.5 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.5 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.5 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.49 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.49 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.48 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.48 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.48 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.48 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.47 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.47 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.47 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.47 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.46 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.46 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.46 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.45 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.45 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.45 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.44 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.44 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.44 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.44 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.43 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.43 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.43 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.43 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.42 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.42 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.41 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.41 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.41 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.4 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.4 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.39 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.39 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.39 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.38 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.38 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.38 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.37 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.37 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.37 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.37 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.36 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.35 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.34 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.33 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.33 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.33 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.32 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.31 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.3 | |
| PLN02231 | 534 | alanine transaminase | 99.28 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.28 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.26 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.25 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.25 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.25 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.24 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.24 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.23 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.22 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.22 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.21 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.21 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.2 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.2 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.19 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.15 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.14 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.13 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.13 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.11 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.1 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.09 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.08 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.05 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.05 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.04 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.03 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.03 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.03 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.01 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.98 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.98 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.98 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 98.96 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 98.96 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.96 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 98.94 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 98.94 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 98.94 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 98.93 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.92 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 98.92 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 98.92 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 98.91 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.91 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 98.91 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 98.91 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 98.9 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 98.89 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.89 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.89 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 98.87 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.87 | |
| PLN02368 | 407 | alanine transaminase | 98.86 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 98.84 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.84 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.82 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 98.82 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 98.8 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 98.79 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 98.78 | |
| PLN00144 | 382 | acetylornithine transaminase | 98.78 | |
| PRK06105 | 460 | aminotransferase; Provisional | 98.77 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 98.76 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.75 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.75 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.75 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 98.75 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 98.74 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 98.73 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.73 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 98.72 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 98.72 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 98.71 | |
| PRK07678 | 451 | aminotransferase; Validated | 98.71 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 98.69 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 98.69 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 98.67 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 98.67 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 98.65 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 98.65 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 98.64 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 98.63 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 98.63 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 98.62 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.62 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.6 | |
| PLN02397 | 423 | aspartate transaminase | 98.59 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.58 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.56 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 98.55 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.54 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 98.54 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 98.53 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.52 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 98.52 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.5 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 98.5 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 98.47 | |
| PRK07046 | 453 | aminotransferase; Validated | 98.45 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.44 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.41 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.36 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.35 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 98.33 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 98.33 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 98.22 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 98.13 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.09 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.07 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.06 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.05 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 98.02 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 97.99 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 97.98 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 97.87 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 97.87 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 97.74 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.7 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 97.63 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 97.6 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 97.58 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.45 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 97.35 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 96.96 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 96.94 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 96.85 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 96.76 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 96.57 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 96.34 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 92.82 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 92.74 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 85.01 |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-65 Score=596.00 Aligned_cols=448 Identities=24% Similarity=0.377 Sum_probs=349.6
Q ss_pred HHHHHhCC-CCCC---chhHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHh-cCCCCCCCCCCCCCCCCcccccc
Q 006746 78 TEFTKAYP-QYFD---TYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQE-SSPSHLRPSLPSQNLDIPFFSVS 152 (632)
Q Consensus 78 ~~F~~~~p-~y~~---~~~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~-~~~~~~~~~~P~~~~~~p~f~~~ 152 (632)
.+|+..|. .|++ ...++.+|+.+||.| ++.+||||+|+++++..+++++. .++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~R~~~fp~l--~~~iYLD~Aatt~~~~~~V~~~~~~~~~~------------------ 61 (805)
T PLN02724 2 ESFLKEFGGYYGYPDGPKPIDELRATEFARL--KGVVYLDHAGATLYSESQLEAALADFSSN------------------ 61 (805)
T ss_pred hhHHhhhcccCCcccchhhHHHHHHHHhhhc--CCCEeEeCCCCCCCCHHHHHHHHHHHHhh------------------
Confidence 46777773 3454 345999998889999 67999999999999887777653 33221
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHH
Q 006746 153 YKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMI 232 (632)
Q Consensus 153 ~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~ 232 (632)
..+||++.+..+....+.++++|++|+++||+++++|+||||+|+|+|+++++++++|++||+|++..++|++.+.| +
T Consensus 62 -~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~-~ 139 (805)
T PLN02724 62 -VYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGI-R 139 (805)
T ss_pred -ccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHH-H
Confidence 12677765444555678999999999999999888788999999999999999999999999987665444445555 5
Q ss_pred HHHHhcCCEEEEEeccC-------CccccCH--HHHHHHHHh----cCcCCCceeEEEEeccCCCCccccchHHHHHHhh
Q 006746 233 RTSEKRGARVMSAEFSW-------PRLRINS--EKLRKMVVS----KGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQE 299 (632)
Q Consensus 233 ~~a~~~G~~v~~v~~~~-------~~~~i~~--~~l~~~i~~----~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~ 299 (632)
+.++++|++|++++++. ..+.++. ++|++.++. .....++++||+++|+||+||.++|+++++++++
T Consensus 140 ~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~ 219 (805)
T PLN02724 140 EYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKD 219 (805)
T ss_pred HHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHH
Confidence 77889999999998762 1233432 556665421 0001235689999999999999999995555554
Q ss_pred C---------CcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-Cceeec
Q 006746 300 N---------DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLL 369 (632)
Q Consensus 300 ~---------g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~ 369 (632)
. +|+++|||||++|+ .++|++++++||+++|+|||||+ |.|+|+||||+++++.|+|.++| |++...
T Consensus 220 ~~~~~~~~~g~~~v~vDaaQ~~g~--~piDv~~~~~Dfl~~S~HK~~Gg-P~G~G~L~vr~~~~~~l~p~~~GGg~~~~~ 296 (805)
T PLN02724 220 NQHSNFSKSGRWMVLLDAAKGCGT--SPPDLSRYPADFVVVSFYKIFGY-PTGLGALLVRRDAAKLLKKKYFGGGTVAAS 296 (805)
T ss_pred hcccccccCcceEEEeehhhhcCC--CCCChhhcCCCEEEEecceeccC-CCCceEEEEehhhhhhhcCCccCCCceEEE
Confidence 2 48999999999999 79999999999999999999997 99999999999998889998887 565321
Q ss_pred ccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCch
Q 006746 370 PAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSE 449 (632)
Q Consensus 370 ~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 449 (632)
.....+..... ..+.+ +| .||+|++.|.++.
T Consensus 297 ~~~~~~~~~~~---------~~~~r---fE----------------~GT~n~~~i~~l~--------------------- 327 (805)
T PLN02724 297 IADIDFVKRRE---------RVEQR---FE----------------DGTISFLSIAALR--------------------- 327 (805)
T ss_pred ecccceeeccc---------cHHHH---hc----------------CCCcchhHHHHHH---------------------
Confidence 11000000000 00012 23 5666667777787
Q ss_pred hhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC----CCCCCcEEEEEEccCCCCccCHH
Q 006746 450 IECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI----RFDRGPALAFNVFDWKREKIEPV 525 (632)
Q Consensus 450 ~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~----~~~rg~ivaFnv~~~~G~~i~~~ 525 (632)
+||++++++|+++|.+|++.|+++|++.|.+++|.| |.|+|+|||+.. ...|++||+||+.+.+|+.+++.
T Consensus 328 ---aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~--g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~ 402 (805)
T PLN02724 328 ---HGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGN--GAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHR 402 (805)
T ss_pred ---HHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCC--CCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHH
Confidence 999999999999999999999999999999999988 889999999851 24689999999999999999999
Q ss_pred HHHHHHHhCCcEEccCccCChHHHhHHHHh----hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHH
Q 006746 526 LVQKLADRENISLSYGSLHHIWFSDKYQKE----KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYR 601 (632)
Q Consensus 526 ~V~kla~~~gI~lr~G~~c~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~r 601 (632)
.|.++++.+||.+|+||+|+++.++.+++. ..+..+++..|++..+.. +....|+||||||+|||+|||++
T Consensus 403 ~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~-----~~~~~G~vRvS~g~ynt~eDvd~ 477 (805)
T PLN02724 403 EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVI-----HGRPTGAVRVSFGYMSTFEDCQK 477 (805)
T ss_pred HHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhhee-----cCcccceEEEEcCccCCHHHHHH
Confidence 999999999999999999999999876542 445566778887644322 12235899999999999999999
Q ss_pred HHHHHHHh
Q 006746 602 LWAFVAQF 609 (632)
Q Consensus 602 lv~~l~~~ 609 (632)
|+++|+++
T Consensus 478 lv~~l~~~ 485 (805)
T PLN02724 478 FIDFIISS 485 (805)
T ss_pred HHHHHHHH
Confidence 99999985
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-62 Score=529.17 Aligned_cols=390 Identities=23% Similarity=0.283 Sum_probs=328.0
Q ss_pred hHHHHHHhhccCcCCC---CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccc-ccccc
Q 006746 92 QIDQIRAKEYYQLSLS---NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL-LHGGQ 167 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~~---~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~-~~g~~ 167 (632)
++..+|+ +||.|... +.+|||++++++.|..|++++..+.... .+|.+... ..+.+
T Consensus 4 ~~~~~r~-~fp~l~~~~~~~~vylD~aa~~~~p~~V~~a~~~~~~~~-------------------~an~~r~~~~~~~~ 63 (405)
T COG0520 4 DVAAVRA-DFPALKREVGKPLVYLDNAATSQKPQAVLDAVAEYYRRY-------------------NANVHRGAHTLAEE 63 (405)
T ss_pred ChHHHHh-hCHHHhhccCCCeEEecCcccccCCHHHHHHHHHHHHhh-------------------cCCcCcccchHHHH
Confidence 4556776 58888521 3689999999999999999987654321 14444222 22444
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--CCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEE
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--FMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
..+.++++|+.+++++|+++ ..+|+||+|+|+|+|+++.++. +++||+|+ +.+|||||.++| .+.+++.|++|++
T Consensus 64 ~t~~~e~aRe~va~~~~a~~-~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw-~~~~~~~Ga~v~~ 141 (405)
T COG0520 64 ATDLYEAAREAVARFLNADS-SDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPW-QELAKRTGAKVRV 141 (405)
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHH-HHHHHhcCcEEEE
Confidence 57899999999999999996 2389999999999999999997 89999965 678999999999 5678889999999
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCC
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSL 323 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~ 323 (632)
+|++ +++.++.+++++.++++| +||+++|+||.||+++|++ |+++||++|++|+|||+|++|+ .++|+++
T Consensus 142 i~~~-~~g~~~~~~~~~~i~~~T------klvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h--~~idv~~ 212 (405)
T COG0520 142 IPLD-DDGLLDLDALEKLITPKT------KLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGH--LPIDVQE 212 (405)
T ss_pred EecC-CCCCcCHHHHHHhcCCCc------eEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCc--cCCCchh
Confidence 9999 889999999999888765 9999999999999999999 9999999999999999999999 7999999
Q ss_pred CCCcEEEEcccc-ccCCCCCceEEEEEeCCCccccCCCCCC-Cceeeccccc-ccccccccCCCCCCccccchhhhhhhc
Q 006746 324 VRPDFLICSFYQ-IFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKK-QLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 324 ~~~Df~~~S~hK-~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
+++||+++|+|| ++| |+|+|+||+|++.++.+.|..+| |++..+.... ..| ...+.+| |
T Consensus 213 l~~Df~afsgHKwl~g--P~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~------------~~~p~rf---e- 274 (405)
T COG0520 213 LGCDFLAFSGHKWLLG--PTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTL------------AELPLRF---E- 274 (405)
T ss_pred cCCCEEEEcccccccC--CCceEEEEEchHHHhhcCCcccCCCceeeecccccccc------------cCcchhh---c-
Confidence 999999999999 667 99999999999999999888777 6665432211 011 0011122 3
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
.||+|++.+.++. +||++++++|++.|.+|++.|..++++.
T Consensus 275 ---------------~gTpn~~~~i~l~------------------------aAl~~~~~ig~~~i~~~e~~L~~~~~~~ 315 (405)
T COG0520 275 ---------------AGTPNIAGAIGLA------------------------AALDYLLEIGMEAIEAHERELTEYLLEG 315 (405)
T ss_pred ---------------cCCchHHHHHhHH------------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5667777778887 9999999999999999999999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
|.++ |.++||||.. ..|+++++|++.+ +++..|.+.++++||.+|+|++|..+..+.+
T Consensus 316 L~~~--------~~v~i~g~~~-~~r~~~vsF~v~~-----~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~-------- 373 (405)
T COG0520 316 LSEL--------PGVEIYGPPD-ADRGGIVSFNVKG-----IHPHDVATLLDEKGIAVRAGHHCAQPLHRLL-------- 373 (405)
T ss_pred HhcC--------CCeEEecCCc-ccCceEEEEEeCC-----CCHHHHHHHHHhCCeEEEeccccccHHHHhc--------
Confidence 9998 8899999976 6799999999999 8999999999999999999999998874332
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
. -.+.||+|+|+|||+||||+|+++|++++.
T Consensus 374 -------------------~-~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 374 -------------------G-VDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred -------------------C-CCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 0 123599999999999999999999999864
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=474.14 Aligned_cols=548 Identities=44% Similarity=0.683 Sum_probs=418.8
Q ss_pred hhhhHHHHhhccccCCCccCCCCCChhHHHHHHHHHHhCCCCCCchhHHHHHHhhccCcCCC-CceEeecCCCCCCCHHH
Q 006746 46 CRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLS-NHTCLDYFGIGLFSYNQ 124 (632)
Q Consensus 46 ~~~~f~~~~~~~~~~~~~~~~~~~lp~l~~a~~~F~~~~p~y~~~~~~d~iR~~ef~~L~~~-~~vyLD~ag~gl~~~~~ 124 (632)
++++ +|+++ +|+.+.|+.+++||.+.+|+..|+++||.|++++++|++|..||.||... -.+++||+|.|++++.+
T Consensus 67 ~Q~r-~ril~--~f~tta~dy~v~lp~~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q 143 (728)
T KOG2142|consen 67 AQVR-LRILA--LFNTTAFDYEVSLPALTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQ 143 (728)
T ss_pred HHHH-HHHHH--HhccccccccchhHHHHHHHHHHHHhCccccccccccchhhhhhcccccccceeeeeeeccceEEeee
Confidence 4444 77777 89999999999999999999999999999999999999999999999643 25899999999999854
Q ss_pred HHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch-hHHHHH-HHHHHHHHcCCCCCCccEEEeCCHHHHH
Q 006746 125 LHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESA-MKKRIMDFLNISENDYGMVFTANRTSAF 202 (632)
Q Consensus 125 ~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~-~~~~~~-~R~~ia~~l~a~~~ey~vvft~naT~al 202 (632)
... ||+.-.|+++.+.+|.+.+.+|++.+ ...... ++.+++.+|++++++|.++||.+..+++
T Consensus 144 ~~~---------------i~~~~~~sls~~~~~ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSaf 208 (728)
T KOG2142|consen 144 TNE---------------ISDSEEFSLSESEANLSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSAF 208 (728)
T ss_pred eee---------------ccccccccccccccCcccchhcccchhcccccceeeeeeecccccCCceEEEEEeecccccc
Confidence 443 56777788899999999999997654 333334 8999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCC--CceeEEEEec
Q 006746 203 KLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK--KQRGLFVFPL 280 (632)
Q Consensus 203 ~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~--~~~~Lv~~~~ 280 (632)
.++++++|+.-...+++.++|+++++.||++.|+.+|+++..+.+.||...+..+++++.+.+.|.+. ...+|++|+.
T Consensus 209 ~Ldaesy~f~~~~~lltiFgyetgAvlv~~r~A~~~Ggkt~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~ 288 (728)
T KOG2142|consen 209 PLDAESYPFDFNPKLLTIFGYETGAVLVMNRSAELKGGKTASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPT 288 (728)
T ss_pred cchHhhCCCcccchheeecCCCchhhHHHhhhhHhhcCccceeecccchHHHHHHHHHHHHhhccccccchhhheeccch
Confidence 99999999988777889999999999999999999999999999999999999999999999876542 2578999999
Q ss_pred cCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCC-CCceEEEEEeCCCccccCC
Q 006746 281 HSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGEN-PSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 281 ~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~-P~G~G~L~Vr~~~~~~L~~ 359 (632)
++++||.++++.|+..+++++|++++|+.++++++|+.++++.++|||..+++|+.||.+ |.|+||+.|++.++..|+.
T Consensus 289 ~sRvtG~~ysy~wmt~al~~~whvlLda~~lG~kdmd~yglS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i~~l~l 368 (728)
T KOG2142|consen 289 QSRVTGGMYSYSWMTLALANNWHVLLDALALGPKDMDSYGLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAISGLEL 368 (728)
T ss_pred HhhhcccchhHHHHHHHHhhhHHHHHhhhccCcchHhhhhhhccCccceeeeEEEEeccCCCCceeeeeeehhhhhceec
Confidence 999999999999999999999999999999999999999999999999999999999987 9999999999999887765
Q ss_pred CCC---C-Cceeeccccc--cccc---------cccc-----CC---------------CCCCcc--ccchhhhhhhccc
Q 006746 360 NTS---S-GMVSLLPAKK--QLWL---------TDEF-----SS---------------CETEPE--QTSKSKQEKVAAT 402 (632)
Q Consensus 360 ~~~---g-G~v~~~~~~~--~~~~---------~~~~-----~~---------------~~~e~~--~~~~~~~e~e~gt 402 (632)
... + |++..+|... ..|. ++++ ++ +.++++ ...+.+.|.+++.
T Consensus 369 rtGcfcn~Gack~~pgl~~~~~~~~~~~g~~cgD~dg~~~s~~~~~~~~~~a~~~~~v~~~~~T~~lm~~~~~se~e~~~ 448 (728)
T KOG2142|consen 369 RTGCFCNIGACKIYPGLYLEMSQKGLSAGKGCGDNDGQPVSGYMQTPADVGAYLSAQVSDVLETDPLMKSPVFSEQEDSD 448 (728)
T ss_pred cCCCCCCCcceeecccccHHHHHHHhhhccccccCCCCcccccccchhhhhHHHHHhhhhhhhccccccccccchhhhcc
Confidence 432 4 8888766210 0000 0000 00 001111 0111222222222
Q ss_pred cCCCccchhh--hhhc------CC---cccchhhHhh--------------------------hhhhhh-----------
Q 006746 403 NTFSGPMSIE--MRQS------GK---LEQGEISEVR--------------------------RAEADS----------- 434 (632)
Q Consensus 403 ~~f~~~~~~~--~~~~------Gt---~~~~~i~~l~--------------------------~~~~~~----------- 434 (632)
+....|+..+ ..|. -. -.+.+|...+ +.++..
T Consensus 449 n~~a~Pl~~~~~~~R~~d~~~~s~~~~~~~~EI~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~~~d~ 528 (728)
T KOG2142|consen 449 NGIATPLLERVQLKRHFDAAVASYPIKCAAFEIEEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKVQEDE 528 (728)
T ss_pred ccccCCcchhhcccchhhhhhhhhhhhhceeEeeccCccccccccccccccccccccceeeecccceeeeccccchhhhc
Confidence 2100011100 0000 00 0000111000 000000
Q ss_pred -----------hhhhcc-CCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCC--CCCcEEEECC
Q 006746 435 -----------IQQKNA-NTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE--GNALVKIYGP 500 (632)
Q Consensus 435 -----------~~~~~~-~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~--G~p~v~Iygp 500 (632)
|+++-. .-.-...+ .|++||+.+.+|+.....|.++|++||+..|..+.|+... -+++|+||||
T Consensus 529 ~~~~~vs~~~sl~~~~a~~~s~~d~~--~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl~~~~~~~~~~~~~nlvq~ygp 606 (728)
T KOG2142|consen 529 QSERRVSFPTSLEQGEASKCSSYDCP--PCRGIDHVDSLGLNLTTNRGRELLNWLVQSLRNLQHSESSSTTVNLVQIYGP 606 (728)
T ss_pred ccceeecchhhhhhhhhhhcccccCc--cccccchhhhhhHHhhhhhhhhHHHHHHHhcccccccccccccccceeeecC
Confidence 000000 00000011 2689999999999999999999999999999888877544 3689999999
Q ss_pred CCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCC
Q 006746 501 KIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580 (632)
Q Consensus 501 ~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 580 (632)
+.+..||+.++||++|+.++++.|.+|++++++.+|.++.+++.++.+.+.--....+.+..... .. ...
T Consensus 607 k~~~erG~~~~fnl~d~~~~fr~p~IV~~lae~E~isl~~~~l~~iri~dp~~r~~dq~~~~r~~-----~~-----~~~ 676 (728)
T KOG2142|consen 607 KTKYERGPAVAFNLFDLSKRFRAPIIVNKLAEREEISLGELSLGHIRIQDPCHRDIDQLLGQRRG-----RT-----NGE 676 (728)
T ss_pred ccccccChhheeehhhhhccccchhhhcchhhhhcccccceeeeeeEEecCcchhhhHHhhhhcc-----cc-----ccc
Confidence 99999999999999999999999999999999999999999998888766110011222222110 00 134
Q ss_pred CCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhcccccccceee
Q 006746 581 LGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYT 623 (632)
Q Consensus 581 ~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~f~~~~~~~~~ 623 (632)
.+..+||+++||.+|||||+++|+|+++||+++||+++.||-.
T Consensus 677 ~Rl~vvt~~lgfltnfedv~K~w~fv~~fl~pgf~~~~~~~~~ 719 (728)
T KOG2142|consen 677 SRLSVVTARLGFLTNFEDVYKLWEFVARFLDPGFVEKVELRTV 719 (728)
T ss_pred eeEeeeeeehhhhhchHHHHHHHHHHHHhcChhhhhhccccch
Confidence 5678999999999999999999999999999999999999966
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=437.26 Aligned_cols=369 Identities=18% Similarity=0.153 Sum_probs=317.7
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
.+||||++++++...++++|..++.. .++||+|.+.||.++.++++++|+.|++++|++|+
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~-------------------~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~ 62 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTE-------------------VFGNPSSLHSFGREARKAVEEAREQIAKLLGADPE 62 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHh-------------------hcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 68999999999999999998765432 13899999999999999999999999999999984
Q ss_pred CccEEEeCCHHHHHHHHHhh--CCCC---CCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHH
Q 006746 189 DYGMVFTANRTSAFKLLAES--YPFM---SVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKM 262 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~s--l~~~---~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~ 262 (632)
+|+||+++|++.|+++.+ +.+. .|.+|+ +..||++ ..+.++.+ +++|.+|.++|++ .+|.+++++|+++
T Consensus 63 --eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~a-Vl~~~~~L-e~~g~~Vtyl~V~-~~G~v~~e~L~~a 137 (386)
T COG1104 63 --EIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPA-VLNTCRYL-ERQGFEVTYLPVD-SNGLVDLEQLEEA 137 (386)
T ss_pred --eEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHH-HHHHHHHH-HhcCCeEEEeCCC-CCCeEcHHHHHHh
Confidence 899999999999999988 4332 466766 4579987 66776665 8899999999999 7999999999999
Q ss_pred HHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCC
Q 006746 263 VVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 263 i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
|+++| .||++.|++|.+|+++|++ |.++||++|+++++||+|++|+ .+||+..+++|++.+|+||+.| |
T Consensus 138 l~~~T------~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gk--ipi~~~~~~vD~ls~SaHK~~G--p 207 (386)
T COG1104 138 LRPDT------ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGK--IPIDLEELGVDLLSFSAHKFGG--P 207 (386)
T ss_pred cCCCc------eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCc--eeccccccCcceEEeehhhccC--C
Confidence 99875 9999999999999999999 9999999999999999999999 8999999999999999999999 9
Q ss_pred CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCccc
Q 006746 342 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 421 (632)
Q Consensus 342 ~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~ 421 (632)
.|+|+||||+.. .+.|...||.+. .| +|+||.|+
T Consensus 208 kGiGaLyv~~~~--~~~p~i~GGgQE--------------------------------~g------------~RsGTenv 241 (386)
T COG1104 208 KGIGALYVRPGV--RLEPLIHGGGQE--------------------------------RG------------LRSGTENV 241 (386)
T ss_pred CceEEEEECCCC--ccCceeccCcCC--------------------------------CC------------CCCCCccH
Confidence 999999998877 578877775431 11 26899999
Q ss_pred chhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCC
Q 006746 422 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 501 (632)
Q Consensus 422 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~ 501 (632)
|.|.++. .|++...+ .++....|++.|.+.|.+.|++. .|.+.+.|..
T Consensus 242 ~~Ivg~~------------------------~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~-------~p~~~~~g~~ 289 (386)
T COG1104 242 PGIVGFG------------------------KAAEIAVE-ELEEENARLRKLRDRLEDGLLEI-------IPDVYLNGDD 289 (386)
T ss_pred HHHHHHH------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-------CCcEEEcCCc
Confidence 9999998 88888765 58899999999999999999976 3889888875
Q ss_pred CCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCC
Q 006746 502 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 581 (632)
Q Consensus 502 ~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 581 (632)
...-+.+++|.+++ ++.+.++-.++.+||.+++|+.|..+..... ++|.++.+. +..
T Consensus 290 -~~rlP~~~~~~f~g-----v~gE~ll~~L~~~gI~vStGSACsS~~~~pS-----hVL~AmG~~------------~e~ 346 (386)
T COG1104 290 -EPRLPNILNFSFPG-----VEGESLLLALDLAGIAVSTGSACSSGSLEPS-----HVLRAMGIS------------EEL 346 (386)
T ss_pred -ccCCCCeEEEEeCC-----CcHHHHHHhccccCeEEeccccccCCCCCcc-----HHHHHcCCC------------hHH
Confidence 23346799999999 7888889999999999999999999866554 666665321 133
Q ss_pred CCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 582 GITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 582 ~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|||.+||+|||+++++.+++.++.
T Consensus 347 a~~siR~S~g~~tt~eei~~~~~~l~~~i~~ 377 (386)
T COG1104 347 AHGSIRFSLGRFTTEEEIDAAAEALKEIIKR 377 (386)
T ss_pred hCccEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999987664
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=439.45 Aligned_cols=387 Identities=20% Similarity=0.264 Sum_probs=309.3
Q ss_pred hHHHHHHhhccCcCC----CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc-cccccc
Q 006746 92 QIDQIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGG 166 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~----~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s-~~~~g~ 166 (632)
+++.+|+ +||.++. .+.|||||++++++|+++++++.+++... .+|+++ .+..+.
T Consensus 4 ~~~~~r~-~fp~~~~~~~~~~~iYld~a~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~ 63 (406)
T PRK09295 4 SVEKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHG-------------------YAAVHRGIHTLSA 63 (406)
T ss_pred ChHHHHh-hCccccCcCCCCceEEEeCcccccCCHHHHHHHHHHHHhc-------------------CCCCCCcccHHHH
Confidence 5578887 6999842 13799999999999999999987765321 133322 111233
Q ss_pred chhHHHHHHHHHHHHHcCC-CCCCccEEEeCCHHHHHHHHHhhC---CCCCCCeEE-EeccccchhhHHHHHHHHhcCCE
Q 006746 167 QESGLESAMKKRIMDFLNI-SENDYGMVFTANRTSAFKLLAESY---PFMSVKNLL-TVYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 167 ~~~~~~~~~R~~ia~~l~a-~~~ey~vvft~naT~al~lv~~sl---~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
...+.++++|+.|++++|+ +++ +|+||+|+|+++++++.++ .+++||+|+ +..+|+++...| ...+++.|++
T Consensus 64 ~~~~~~~~~r~~la~~~~~~~~~--~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~-~~~~~~~g~~ 140 (406)
T PRK09295 64 QATEKMENVRKQAALFINARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPW-QMLCARVGAE 140 (406)
T ss_pred HHHHHHHHHHHHHHHHcCcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHH-HHHHHHcCcE
Confidence 4568899999999999998 443 7999999999999999987 467899976 556888865566 5667889999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
++.++++ +++.++.++|+++++++ ++||++++++|+||.++|++ |+++||++|++++||++|++|. .++|
T Consensus 141 v~~v~~~-~~~~~d~~~l~~~i~~~------t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~--~~~~ 211 (406)
T PRK09295 141 LRVIPLN-PDGTLQLETLPALFDER------TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMH--HPVD 211 (406)
T ss_pred EEEEecC-CCCCCCHHHHHHhcCCC------cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCc--cccC
Confidence 9999987 56779999999998764 48999999999999999999 9999999999999999999998 6899
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCce-eecccccccccccccCCCCCCccccchhhhhhh
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMV-SLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
+..+++||+++|+||++| |.|+|+||++++.++.+++...||.. .... ....+ .+. ..+.+|
T Consensus 212 ~~~~~~D~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~--------~~~--~~~~r~---- 274 (406)
T PRK09295 212 VQALDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGGSMIATVS-LTEGT--------TWA--KAPWRF---- 274 (406)
T ss_pred chhcCCCEEEeehhhccC--CCCcEEEEEchHhHhhCCCcccCCceeeeee-cCCcc--------ccC--Cchhhc----
Confidence 999999999999999999 88999999999988888665544432 2110 00000 000 000111
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
+.||+|++.+.++. +||+++.++|+++|.+|.+.|.++|++
T Consensus 275 ---------------e~GT~~~~~~~~l~------------------------~al~~~~~~g~~~i~~~~~~l~~~l~~ 315 (406)
T PRK09295 275 ---------------EAGTPNTGGIIGLG------------------------AALDYVSALGLNNIAEYEQNLMHYALS 315 (406)
T ss_pred ---------------CCCCccHHHHHHHH------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 35777888888887 999999999999999999999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
.|.++ +.+++++|. .|.++++|++.+ +++..+.+.++++||.+++|++|+.+....+
T Consensus 316 ~l~~~--------~~~~~~~~~---~~~~iv~~~~~~-----~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~------- 372 (406)
T PRK09295 316 QLESV--------PDLTLYGPQ---NRLGVIAFNLGK-----HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY------- 372 (406)
T ss_pred HHhcC--------CCEEEeCCC---CCceEEEEEECC-----cCHHHHHHHHHhCCeEEeccccchHHHHHHH-------
Confidence 99987 679999984 478999999876 5677787788899999999999997653322
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
. ..+.||+|+|+|||+|||++|+++|++..
T Consensus 373 --------------------~-~~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 373 --------------------N-VPAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred --------------------C-CCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 1 23689999999999999999999998763
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=430.21 Aligned_cols=365 Identities=23% Similarity=0.266 Sum_probs=291.8
Q ss_pred eEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccc-cccchhHHHHHHHHHHHHHcCCCCC
Q 006746 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL-HGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 110 vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~-~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
||||++|.|++|+.+++++.+++... .+|+++... .+.+..++++++|+.+++++|+++
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~- 60 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNF-------------------YANPHSGVSHRSREFAEILEEAREALAKLLGAPP- 60 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHS-------------------GSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSST-
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHh-------------------hhcCcccccchhhhhhHHHHHHHHHHHHhcCCcc-
Confidence 79999999999999999987754321 134422221 233457899999999999999997
Q ss_pred CccEEEeCCHHHHHHHHHhhC--CCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 189 DYGMVFTANRTSAFKLLAESY--PFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl--~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
+++|+||+|+|.|+++++.++ ++++|++|+ +..+|+++...| .+.+++.|++|+.++.+ .++.++++++++.|.+
T Consensus 61 ~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~-~~~~~~~g~~v~~i~~~-~~~~~~~~~~~~~l~~ 138 (371)
T PF00266_consen 61 DEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPW-EEIAKRKGAEVRVIPAD-PGGSLDLEDLEEALNP 138 (371)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHH-HHHHHHTTEEEEEEEEG-TTSSCSHHHHHHHHHT
T ss_pred ccccccccccchhhhhhhhcccccccccccccccccccccccccc-ccccccchhhhcccccc-ccchhhhhhhhhhhcc
Confidence 258999999999999999999 679999965 678999854444 66778899999999998 5678999999999986
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCce
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF 344 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~ 344 (632)
+ ++||+++|+++.||.++|++ |.++||++|++++||++|++|. .++|++++++||+++|+||++| |.|+
T Consensus 139 ~------~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~--~~id~~~~~~D~~~~s~~Kl~g--p~G~ 208 (371)
T PF00266_consen 139 D------TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGC--VPIDLDELGADFLVFSSHKLGG--PPGL 208 (371)
T ss_dssp T------ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTT--SS--TTTTTESEEEEESTSTTS--SSTE
T ss_pred c------cceEEeecccccccEEeeeceehhhhhccCCceeEechhcccc--ccccccccccceeeecccccCC--CCch
Confidence 4 59999999999999999999 9999999999999999999998 6999999999999999999777 9999
Q ss_pred EEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 345 GCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 345 G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
|+||||++++++++|...| +....... ..|. . .+.. + -.+.||++++.
T Consensus 209 g~l~v~~~~~~~~~p~~~~~~~~~~~~~--~~~~-----------------~----~~~~-~-------~~~~GT~~~~~ 257 (371)
T PF00266_consen 209 GFLYVRPEAIERLRPAKPGGGYLDFPSL--QEYG-----------------L----ADDA-R-------RFEGGTPNVPA 257 (371)
T ss_dssp EEEEEEHHHHHHHHTSSSSSSTTTHHHH--HHHC-----------------H----HSTT-T-------GSSSSS--HHH
T ss_pred hhheehhhhhhccccccccccccccccc--hhcc-----------------c----cccc-c-------cccccceeeeh
Confidence 9999999999999887766 22211100 0000 0 0000 0 01357888888
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 503 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~ 503 (632)
++++. .+|+++.++|+++|.+|...|.+++++.|.++ +.+++++|+..
T Consensus 258 ~~~l~------------------------~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~--------~~~~~~~~~~~ 305 (371)
T PF00266_consen 258 IYALN------------------------EALKLLEEIGIERIRERIRELAEYLREALEEL--------PGIEVLGPDDE 305 (371)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TTEEESSSSCG
T ss_pred hhhHH------------------------HHHhhhhccccccchhhhhhHHHHHHhhhhcC--------CceeEeeeccc
Confidence 99998 99999999999999999999999999999998 77999998766
Q ss_pred CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCC
Q 006746 504 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 583 (632)
Q Consensus 504 ~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
..++++++|++.+ +++..+.+.++++||.+++|+.|+....... . -.
T Consensus 306 ~~~~~i~~~~~~~-----~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~---------------------------~-~~ 352 (371)
T PF00266_consen 306 PRRPSIVSFNLPG-----SDADDVVKYLEERGIAVSTGSACAGPSLDIL---------------------------G-MG 352 (371)
T ss_dssp GBGTTEEEEEETT-----SSHHHHHHHHHHHTEEEEESTTTCHHHHHHH---------------------------H-TT
T ss_pred ccccceEEEeecC-----CCHHHHHHHHhhcCEEEeccCcccHHHHHHh---------------------------C-CC
Confidence 7889999999977 6778888877777999999999995443332 0 12
Q ss_pred cEEEEccCCCCCHHHHHHH
Q 006746 584 TVVTASLGYLANFEDVYRL 602 (632)
Q Consensus 584 ~~VRvSlg~~~t~eDV~rl 602 (632)
++||||+|+|||+|||++|
T Consensus 353 ~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 353 GVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TEEEEE-GTTSSHHHHHHH
T ss_pred CEEEEeccCCCCHHHHhhC
Confidence 7999999999999999997
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=422.59 Aligned_cols=389 Identities=21% Similarity=0.272 Sum_probs=304.4
Q ss_pred HHHhhccCcCC----CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccccc-ccchhH
Q 006746 96 IRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLH-GGQESG 170 (632)
Q Consensus 96 iR~~ef~~L~~----~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~-g~~~~~ 170 (632)
+|+ +||.++. ++.+|||+++.++.|+.+++++.+++.... .|+++...+ +....+
T Consensus 17 ~r~-~fp~~~~~~~~~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 76 (424)
T PLN02855 17 TRP-DFPILDQTVNGSKLVYLDNAATSQKPAAVLDALQDYYEEYN-------------------SNVHRGIHALSAKATD 76 (424)
T ss_pred HHH-hCchhccccCCCCeEEeeCccccCCCHHHHHHHHHHHHhcC-------------------CCCCCccchHHHHHHH
Confidence 454 6998842 247999999999999999999877653221 233221111 222356
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC---CCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY---PFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl---~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.++++|+.|++++|+++ +++|+||+|+|+++++++.++ .+++|++|++ ..+|+++...| ...+++.|++++.++
T Consensus 77 ~~~~~r~~la~~~~~~~-~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~-~~~a~~~g~~v~~v~ 154 (424)
T PLN02855 77 AYELARKKVAAFINAST-SREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPW-QLVAQKTGAVLKFVG 154 (424)
T ss_pred HHHHHHHHHHHHcCCCC-CCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHH-HHHHHHcCCEEEEEe
Confidence 78899999999999963 248999999999999999986 4688999775 56888754455 567788999999999
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR 325 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~ 325 (632)
++ +++.+++++|++.|+++ ++||++++++|.||.++|++ |+++||++|++++||++|++|. .++|+..++
T Consensus 155 ~~-~~~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~--~~~~~~~~~ 225 (424)
T PLN02855 155 LT-PDEVLDVEQLKELLSEK------TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPH--MPVDVQTLG 225 (424)
T ss_pred cC-CCCCcCHHHHHHHhccC------ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC--cCCCchhcC
Confidence 87 44568999999999764 48999999999999999999 9999999999999999999997 689999999
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCC
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 405 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f 405 (632)
+||+++|+||++| |.|+|+||++++.++.++|...||..... . |.... .+.. .+.++
T Consensus 226 ~d~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~p~~~g~~~~~~-~----~~~~~----~~~~--~~~r~---------- 282 (424)
T PLN02855 226 ADFLVASSHKMCG--PTGIGFLWGKSDLLESMPPFLGGGEMISD-V----FLDHS----TYAP--PPSRF---------- 282 (424)
T ss_pred CCEEEeecccccC--CCccEEEEEchhhhhcCCCEecCCCceee-e----ecCcc----ccCC--Chhhc----------
Confidence 9999999999988 88999999999998888765544332100 0 10000 0000 00011
Q ss_pred CccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccC
Q 006746 406 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ 485 (632)
Q Consensus 406 ~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~ 485 (632)
+.||++++.++++. .+|+++.++|+++|.+|++.|.++|++.|.++
T Consensus 283 ---------e~GT~~~~~~~~l~------------------------~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~- 328 (424)
T PLN02855 283 ---------EAGTPAIGEAIGLG------------------------AAIDYLSEIGMDRIHEYEVELGTYLYEKLSSV- 328 (424)
T ss_pred ---------cCCChHHHHHHHHH------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC-
Confidence 35777888888887 99999999999999999999999999999887
Q ss_pred CCCCCCCCcEEEECCCC--CCCCCcEEEEEEccCCCCccCHHHHHHHHHhC-CcEEccCccCChHHHhHHHHhhhhhhhh
Q 006746 486 HPNTEGNALVKIYGPKI--RFDRGPALAFNVFDWKREKIEPVLVQKLADRE-NISLSYGSLHHIWFSDKYQKEKDNVLEK 562 (632)
Q Consensus 486 h~~~~G~p~v~Iygp~~--~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~-gI~lr~G~~c~~~~~~~~~~~~~~~l~~ 562 (632)
|.++||+|.. ...|+++++|++.+ +++..|.+.+.++ ||.+++|++|+.+.....
T Consensus 329 -------~g~~i~~~~~~~~~~r~~~v~~~~~~-----~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~---------- 386 (424)
T PLN02855 329 -------PGVRIYGPKPSEGVGRAALCAFNVEG-----IHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYL---------- 386 (424)
T ss_pred -------CCEEEeCCCcccccCcccEEEEEECC-----cCHHHHHHHhcccCCEEEechhhhhHHHHHHh----------
Confidence 7799999864 34578999999976 5677777766655 999999999997543111
Q ss_pred hhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 563 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ -.+.||||+|+|||++||++|+++|++.+..
T Consensus 387 -----------------g-~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 387 -----------------G-VNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred -----------------C-CCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 1 1258999999999999999999999987644
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=415.92 Aligned_cols=387 Identities=15% Similarity=0.187 Sum_probs=306.1
Q ss_pred hHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccc-cccccchhH
Q 006746 92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESG 170 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~-~~~g~~~~~ 170 (632)
+++++|+ +||.|+ ++.+||||+++|+.|+.+++++.+++... .+|++.. +..+....+
T Consensus 2 ~~~~~r~-~fp~l~-~~~iyld~a~~~~~p~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 60 (398)
T TIGR03392 2 NPAQFRQ-QFPALQ-DGTVYLDSAATALKPQAVIDATQQFYRLS-------------------SGTVHRSQHQQAQSLTA 60 (398)
T ss_pred ChhHHHH-hCCccC-CCeEEeeCccccCCCHHHHHHHHHHHHhc-------------------CCCCCCcccHHHHHHHH
Confidence 4567886 699984 46899999999999999999987755321 1343321 111223457
Q ss_pred HHHHHHHHHHHHcCCC-CCCccEEEeCCHHHHHHHHHhhC---CCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEE
Q 006746 171 LESAMKKRIMDFLNIS-ENDYGMVFTANRTSAFKLLAESY---PFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~-~~ey~vvft~naT~al~lv~~sl---~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.++++|+.+++++|++ ++ +|+||+|+|+|+++++.++ .+++||+|++ ..+|+++...| ...+++.|++++.+
T Consensus 61 ~~~~~r~~la~~~g~~~~~--~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~-~~~~~~~g~~v~~v 137 (398)
T TIGR03392 61 RYELARQQVARFLNAPDAE--NIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPW-LMVAQQTGAKVVKL 137 (398)
T ss_pred HHHHHHHHHHHHhCCCCCC--eEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHH-HHHHHHcCcEEEEE
Confidence 8899999999999995 44 7999999999999999998 4789999765 56888754555 55678899999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLV 324 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~ 324 (632)
+.+ +++.+++++|+++++++ ++|+++++++|+||..+|++ |+++||++|+++++|++|++++ .+++++.+
T Consensus 138 ~~~-~~~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~--~~~~~~~~ 208 (398)
T TIGR03392 138 PIG-ADLLPDIRQLPELLTPR------TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVH--GPPDVQAL 208 (398)
T ss_pred ecC-CCCCcCHHHHHHHhccC------ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC--CCCChhhc
Confidence 987 55678999999999765 48999999999999999999 9999999999999999999887 58899889
Q ss_pred CCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccC
Q 006746 325 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 404 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~ 404 (632)
++||+++|+||+|| |.|+|+||++++.++.+.+...||....... ++ .+...+.+.++
T Consensus 209 ~~d~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~--------- 266 (398)
T TIGR03392 209 DIDFYAFSGHKLYG--PTGIGVLYGKTELLEAMPPWQGGGKMLSHVS---FD--------GFIPQAVPHRF--------- 266 (398)
T ss_pred CCCEEEEecccccC--CCceEEEEEcHHHHhhCCCeecCCceEeecc---cc--------ccccCCChhhc---------
Confidence 99999999999999 8899999999998888866443333211000 00 01100011111
Q ss_pred CCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Q 006746 405 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL 484 (632)
Q Consensus 405 f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l 484 (632)
+.||++++.+.++. .|++++.+.|++++.+|.+.|.+++++.|.++
T Consensus 267 ----------e~GT~~~~~~~a~~------------------------~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l 312 (398)
T TIGR03392 267 ----------EAGTPNIAGVIGLS------------------------AALEWLTDIDIAAAEAWSVSLADLAEERLAQL 312 (398)
T ss_pred ----------cCCCCCHHHHHHHH------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 35777888888887 99999999999999999999999999999987
Q ss_pred CCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhh
Q 006746 485 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 564 (632)
Q Consensus 485 ~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~ 564 (632)
|.++++++. .+++++|++.+ ++.+.+.+.++++||.++.|++|+.......
T Consensus 313 --------~g~~~~~~~----~~~i~~~~~~~-----~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~------------ 363 (398)
T TIGR03392 313 --------PGFRSFRCP----GSSLLAFDFAG-----VHHSDLAALLAESGIALRAGQHCAQPLMAAL------------ 363 (398)
T ss_pred --------CCeEEeCCC----CCcEEEEEeCC-----cCHHHHHHHHHhCCEEEecCccchHHHHHHh------------
Confidence 668888753 46899999876 5677787777889999999999996543221
Q ss_pred ccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 565 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ ..++||||+|+|||.+||++|+++|+++++.
T Consensus 364 ---------------g-~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 364 ---------------G-VSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred ---------------C-CCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 1 1369999999999999999999999987763
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=413.15 Aligned_cols=387 Identities=17% Similarity=0.208 Sum_probs=307.3
Q ss_pred hHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc-ccccccchhH
Q 006746 92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESG 170 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s-~~~~g~~~~~ 170 (632)
+++++|+ +||.|+ ++.+||||+++|+.|+.+++++.+++... .+|++. .+..+....+
T Consensus 5 ~~~~~r~-~fp~l~-~~~~yld~a~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 63 (401)
T PRK10874 5 NPAQFRA-QFPALQ-DAGVYLDSAATALKPQAVIEATQQFYSLS-------------------AGNVHRSQFAAAQRLTA 63 (401)
T ss_pred CHHHHHH-hCCCcC-CceEEEeCCcccCCCHHHHHHHHHHHHhc-------------------cCCCCCcccHHHHHHHH
Confidence 5678886 699885 46899999999999999999987765421 134332 1112333467
Q ss_pred HHHHHHHHHHHHcCC-CCCCccEEEeCCHHHHHHHHHhhC---CCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEE
Q 006746 171 LESAMKKRIMDFLNI-SENDYGMVFTANRTSAFKLLAESY---PFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a-~~~ey~vvft~naT~al~lv~~sl---~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.++++|+.+++++|+ +++ +|+||+|+|+++++++.++ .+++||+|+ +..+|+++...| ...+++.|++++.+
T Consensus 64 ~~~~~r~~la~~~g~~~~~--~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~-~~~~~~~g~~v~~v 140 (401)
T PRK10874 64 RYEAAREQVAQLLNAPDAK--NIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPW-LMVAQQTGAKVVKL 140 (401)
T ss_pred HHHHHHHHHHHHcCCCCCC--EEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHH-HHHHHHhCCEEEEE
Confidence 899999999999999 544 7999999999999999998 478999976 457888854555 55678899999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLV 324 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~ 324 (632)
+++ .++.+++++++++|+++ ++|+++++++|.||.++|++ |+++|+++|++++||++|++|. .++|++.+
T Consensus 141 ~~~-~~~~~d~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~--~~~~~~~~ 211 (401)
T PRK10874 141 PLG-ADRLPDVDLLPELITPR------TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVH--FPADVQAL 211 (401)
T ss_pred ecC-CCCcCCHHHHHHhcCcC------cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccc--ccCCchhc
Confidence 987 56778999999999765 48999999999999999999 9999999999999999999887 58888889
Q ss_pred CCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccC
Q 006746 325 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 404 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~ 404 (632)
++||+++|+||+|| |.|+|+||++++.++.+++...||..... ..|. .+.....+.++
T Consensus 212 ~~d~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~--------- 269 (401)
T PRK10874 212 DIDFYAFSGHKLYG--PTGIGVLYGKSELLEAMSPWQGGGKMLTE----VSFD-------GFTPQSAPWRF--------- 269 (401)
T ss_pred CCCEEEEecccccC--CCccEEEEEchHHHhcCCCeecCCcceEe----eccC-------ccCCCCChhhc---------
Confidence 99999999999999 88999999999998888765433321100 0010 01100000111
Q ss_pred CCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Q 006746 405 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL 484 (632)
Q Consensus 405 f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l 484 (632)
+.||+|++.+.++. .|++++.++|++++.+|++.|.+++++.|.++
T Consensus 270 ----------e~Gt~~~~~~~al~------------------------~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~ 315 (401)
T PRK10874 270 ----------EAGTPNVAGVIGLS------------------------AALEWLADIDINQAESWSRSLATLAEDALAKL 315 (401)
T ss_pred ----------cCCCcCHHHHHHHH------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 35777888888887 99999999999999999999999999999987
Q ss_pred CCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhh
Q 006746 485 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 564 (632)
Q Consensus 485 ~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~ 564 (632)
|.++++++. .+++++|++.+ ++...+.+++.++||.++.|++|..+.....
T Consensus 316 --------~g~~~~~~~----~~~i~~~~~~~-----~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~------------ 366 (401)
T PRK10874 316 --------PGFRSFRCQ----DSSLLAFDFAG-----VHHSDLVTLLAEYGIALRAGQHCAQPLLAAL------------ 366 (401)
T ss_pred --------CCEEEeCCC----CCcEEEEEECC-----cCHHHHHHHHHHCCcEEeccccchHHHHHHh------------
Confidence 668888763 46899999865 5677787777889999999999986533221
Q ss_pred ccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 565 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ ..+.||+|+|+|||.+||++|+++|++++..
T Consensus 367 ---------------g-~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 367 ---------------G-VTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred ---------------C-CCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 1 1369999999999999999999999988763
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=397.07 Aligned_cols=387 Identities=19% Similarity=0.278 Sum_probs=304.5
Q ss_pred HHHHhhccCcCC----CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccc-ccccchh
Q 006746 95 QIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL-LHGGQES 169 (632)
Q Consensus 95 ~iR~~ef~~L~~----~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~-~~g~~~~ 169 (632)
++|+ +||.++. +..+|||+++.|++|+.+++++.+++... .+|+++.. .++....
T Consensus 2 ~~~~-~f~~~~~~~~~~~~~yld~~~~~~~p~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 61 (403)
T TIGR01979 2 NIRA-DFPILKRKINGKPLVYLDSAATSQKPQQVIDAVAEYYRNS-------------------NANVHRGIHTLSVRAT 61 (403)
T ss_pred chhh-hCchhcCCCCCCceEEEeCccccCCCHHHHHHHHHHHHhC-------------------CCCCCCCccHHHHHHH
Confidence 3565 6998842 13599999999999999999987654321 13443321 1122345
Q ss_pred HHHHHHHHHHHHHcCCC-CCCccEEEeCCHHHHHHHHHhhCC---CCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEE
Q 006746 170 GLESAMKKRIMDFLNIS-ENDYGMVFTANRTSAFKLLAESYP---FMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~-~~ey~vvft~naT~al~lv~~sl~---~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
+.++++|+.|++++|++ ++ +|+||+|+|+|+++++.++. +++|++|++ ..+|+++...| ...++..|++++.
T Consensus 62 ~~~~~~r~~ia~~~~~~~~~--~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~-~~~~~~~g~~~~~ 138 (403)
T TIGR01979 62 EAYEAVREKVAKFINAASDE--EIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPW-QLLAERTGATLKF 138 (403)
T ss_pred HHHHHHHHHHHHHhCcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHH-HHHHHhcCcEEEE
Confidence 67889999999999998 43 79999999999999999873 578999765 56888754444 5667788999999
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCC
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSL 323 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~ 323 (632)
++++ .++.++.+++++.++++ ++++++++++|.||.++|++ |+++||++|+++++|++|.+|. .++|++.
T Consensus 139 v~~~-~~~~~~~~~l~~~i~~~------~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~--~~~~~~~ 209 (403)
T TIGR01979 139 IPLD-DDGTLDLDDLEKLLTEK------TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPH--MPVDVQA 209 (403)
T ss_pred EecC-CCCCCCHHHHHHHhccC------CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCc--cccCccc
Confidence 9988 67789999999999764 48999999999999999999 9999999999999999999987 6889998
Q ss_pred CCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCC-ceeecccccccccccccCCCCCCccccchhhhhhhccc
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 402 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt 402 (632)
+++||+++|+||+|| |.|+|+||++++.++.+++...|| ++.... + .. ..+.. .+.++
T Consensus 210 ~~~d~~~~s~~K~~g--p~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~-----~--~~---~~~~~--~~~~~------- 268 (403)
T TIGR01979 210 LDCDFYVFSGHKMYG--PTGIGVLYGKEELLEQMPPFLGGGEMIAEVS-----F--EE---TTYNE--APHKF------- 268 (403)
T ss_pred cCCCEEEEecccccC--CCCceEEEEchHHHhcCCCeecCCCceeecc-----c--Cc---cccCC--Chhhc-------
Confidence 999999999999999 889999999999888787655443 322110 0 00 00000 00011
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
+.||++++.+.++. .+|+++.++|++++.+|...|.++|++.|.
T Consensus 269 ------------~~gt~~~~~~~al~------------------------~al~~~~~~g~~~~~~~~~~l~~~l~~~l~ 312 (403)
T TIGR01979 269 ------------EAGTPNIAGVIGLG------------------------AAIDYLEAIGLENIEAHEHELTAYALERLG 312 (403)
T ss_pred ------------CCCCccHHHHHHHH------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 24667777777777 899999999999999999999999999998
Q ss_pred ccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhh
Q 006746 483 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK 562 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~ 562 (632)
++ +.+++++|.....++++++|++.+ ++...++++++++||.++.|++|+.+....+
T Consensus 313 ~~--------~g~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~---------- 369 (403)
T TIGR01979 313 EI--------PGLRIYGPRDAEDRGGIISFNVEG-----VHPHDVGTILDEEGIAVRSGHHCAQPLMRRF---------- 369 (403)
T ss_pred cC--------CCEEEeCCCCccccCceEEEEeCC-----cCHHHHHHHHhhCCEEEcchhhhhHHHHHHh----------
Confidence 87 679999987555679999999876 5667788888899999999999976532221
Q ss_pred hhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 563 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+ ..+.||+|+|+|||.+||++|+++|+++++
T Consensus 370 -----------------~-~~~~iRiS~~~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 370 -----------------G-VPATCRASFYIYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred -----------------C-CCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 0 236899999999999999999999988654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=398.41 Aligned_cols=357 Identities=15% Similarity=0.126 Sum_probs=282.9
Q ss_pred eEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc-ccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 110 vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s-~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
+||||++.+++|+.+++++.+++.. .++||++ .+.++....+.++++|+++++++|++++
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~ 61 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIE-------------------HFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK 61 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHh-------------------CCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6999999999999999998775432 1145544 2222334467899999999999999875
Q ss_pred CccEEEeCCHHHHHHHHHhhC-C--CCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 189 DYGMVFTANRTSAFKLLAESY-P--FMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl-~--~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
+|+||+|+|+|+++++.++ . +++|++|++ ..+|++....| .. ++++|++++.++++ +++.++.++|+++|+
T Consensus 62 --~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~-~~-~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~ 136 (364)
T PLN02651 62 --EIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSC-RH-LQQEGFEVTYLPVK-SDGLVDLDELAAAIR 136 (364)
T ss_pred --eEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHH-HH-HHhcCCEEEEEccC-CCCcCCHHHHHHhcC
Confidence 7999999999999887664 1 467899765 56888743334 33 34789999999987 567899999999997
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 343 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G 343 (632)
++ ++|+++++++|.||.++|++ |.++||++|++++||++|++|. .++|++++++||+++|+|||+| |.|
T Consensus 137 ~~------t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~--~~~~~~~~~~D~~~~s~hK~~g--p~G 206 (364)
T PLN02651 137 PD------TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGK--IPVDVDDLGVDLMSISGHKIYG--PKG 206 (364)
T ss_pred CC------cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCC--cccCcccCCCCEEEechhhhCC--CCc
Confidence 65 48999999999999999999 9999999999999999999998 6999999999999999999977 999
Q ss_pred eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 344 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 344 ~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
+|+||||++.+..+.|...||... . . ++.||+|++.
T Consensus 207 ~g~l~v~~~~~~~l~p~~~g~~~~------------~-------------~-------------------~~~GT~~~~~ 242 (364)
T PLN02651 207 VGALYVRRRPRVRLEPLMSGGGQE------------R-------------G-------------------RRSGTENTPL 242 (364)
T ss_pred eEEEEEcCCCCCCCCccccCCCcc------------C-------------C-------------------ccCCCccHHH
Confidence 999999999988888776552210 0 0 1357788888
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 503 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~ 503 (632)
+.+|. ++|+++.+ ++++|.+|++.|.++|++.|.++ .|.++|++|...
T Consensus 243 ~~~l~------------------------~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~-------~~~~~i~~~~~~ 290 (364)
T PLN02651 243 VVGLG------------------------AACELAMK-EMDYDEKHMKALRERLLNGLRAK-------LGGVRVNGPRDP 290 (364)
T ss_pred HHHHH------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhh-------CCCEEEECCCCc
Confidence 88888 99999987 56999999999999999999863 267999998543
Q ss_pred CC-CCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCC
Q 006746 504 FD-RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 582 (632)
Q Consensus 504 ~~-rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 582 (632)
.. +.+|++|++.+ ++++.|.+.+++ |.+++|++|+.+.... .+++++.... ....
T Consensus 291 ~~~~~~i~~~~~~~-----~~~~~~~~~L~~--i~v~~g~~c~~~~~~~-----~~~~~~~g~~------------~~~~ 346 (364)
T PLN02651 291 EKRYPGTLNLSFAY-----VEGESLLMGLKE--VAVSSGSACTSASLEP-----SYVLRALGVP------------EEMA 346 (364)
T ss_pred ccCcCCEEEEEeCC-----CCHHHHHHHhCC--EEEEchhhcCCCCCCc-----CHHHHHcCCC------------hHHh
Confidence 33 47799999976 678888776654 9999999999874322 1333332100 0123
Q ss_pred CcEEEEccCCCCCHHHHH
Q 006746 583 ITVVTASLGYLANFEDVY 600 (632)
Q Consensus 583 ~~~VRvSlg~~~t~eDV~ 600 (632)
.++||+|+|+|||+||||
T Consensus 347 ~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 347 HGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CceEEEEcCCCCCHHHcC
Confidence 479999999999999986
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=390.93 Aligned_cols=372 Identities=18% Similarity=0.188 Sum_probs=294.2
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
.+.+|||+.++|+++..|++++..|+.. ..+|||+. .||.+....++++|+.||+++||+
T Consensus 42 ~~~vyld~~at~p~~~~Vldam~~~~~~-------------------~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd 101 (428)
T KOG1549|consen 42 TRPVYLDNQATGPMDPRVLDAMLPYLLE-------------------YLGNPHSR-SYGWKAEDAVEAAREQVAKLINAD 101 (428)
T ss_pred CccEEEecCcCCCCCHHHHHHHHHHHHH-------------------hhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCC
Confidence 5799999999999999999999876532 12789988 688888888999999999999999
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCC----eEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVK----NLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd----~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
+.+ ||||+|+|+++|+++.+.+|..++ +|++.. +|++ ...|++ ..+..|++|+++|++ .++.++.+++++
T Consensus 102 ~~d--IiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~-v~~s~~-~l~~~g~~Vt~lpv~-~~~~~d~~~~~~ 176 (428)
T KOG1549|consen 102 PSD--IVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPC-VLDSCR-ALQEEGLEVTYLPVE-DSGLVDISKLRE 176 (428)
T ss_pred CCc--EEEeCCchHHHHHHHHHhhccccccccceEEEecccCcc-hhHHHH-HHHhcCeEEEEeccC-ccccccHHHHHH
Confidence 874 999999999999999999997777 777554 5655 677754 568899999999999 888899999999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCC
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGEN 340 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~ 340 (632)
.|+++| +||.+.+++|.+|+.+|++ |+++|++.|++|++||||++|+ +++|+.++++||+++|+|||||
T Consensus 177 ~i~~~T------~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~--i~vDV~eln~D~~s~s~HK~yg-- 246 (428)
T KOG1549|consen 177 AIRSKT------RLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGK--IPVDVQELNADFLSISAHKIYG-- 246 (428)
T ss_pred hcCCCc------eEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCC--ccccHHHcCchheeeecccccC--
Confidence 999865 9999999999999999999 9999999999999999999999 7999999999999999999999
Q ss_pred CCceEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCc
Q 006746 341 PSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL 419 (632)
Q Consensus 341 P~G~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~ 419 (632)
|+|+|+||||+ .-.-.+.|.+.||... +. .++||.
T Consensus 247 p~~iGaLYvr~~~~~~~~~p~~~GGgq~-----r~---------------------------------------~rsGT~ 282 (428)
T KOG1549|consen 247 PPGIGALYVRRKRPRLRVEPPLSGGGQE-----RG---------------------------------------LRSGTV 282 (428)
T ss_pred CCcceEEEEccCCCcccccCcccCCccc-----cc---------------------------------------cccCCc
Confidence 88899999998 2222345666653311 00 135667
Q ss_pred ccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEEC
Q 006746 420 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYG 499 (632)
Q Consensus 420 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iyg 499 (632)
+.+.+.++. .|+++..+. +..+..+.+.+...+..++..- .+.+.++|
T Consensus 283 ~~~~~~~~g------------------------sA~e~~~~~-~~~~~~~~~~~~~~ll~~i~~~-------~~~~~~~G 330 (428)
T KOG1549|consen 283 ATPLAVGLG------------------------SAAEFVNKE-MAYDEAIIKRLSEKLLMGIGQS-------LPEVTLNG 330 (428)
T ss_pred CchhhhhhH------------------------HHHHHHHhh-cchhHHHHHHHHHHHHHHHhhh-------CchhhccC
Confidence 777788887 888888764 5566666666888887777652 26688888
Q ss_pred CCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccC
Q 006746 500 PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKA 579 (632)
Q Consensus 500 p~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 579 (632)
+. +....+.++|++....|+.+ +.+...|.+++|..|.......+ -++.+...+ .
T Consensus 331 ~~-~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~l~s~~a~~~~~~eps-----y~l~~~G~~------------~ 385 (428)
T KOG1549|consen 331 SG-KSRYPGLVSLSFPYVEGESL-------LMDLKDVALSSGSACTSASLEPS-----YVLRAIGVD------------E 385 (428)
T ss_pred Cc-ccccccceeeecccccCcch-------hhhhhhhhhcccchhhcCCCCcc-----hhhhhcCcc------------h
Confidence 86 35578999999985444332 33445788888988876431111 112111100 1
Q ss_pred CCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhcc
Q 006746 580 NLGITVVTASLGYLANFEDVYRLWAFVAQFLDADF 614 (632)
Q Consensus 580 ~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~f 614 (632)
......||+|+|.|||.+||+++++.++++...-|
T Consensus 386 ~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~ 420 (428)
T KOG1549|consen 386 DLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLR 420 (428)
T ss_pred hhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhcc
Confidence 23457999999999999999999999999876544
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=391.77 Aligned_cols=367 Identities=19% Similarity=0.172 Sum_probs=290.3
Q ss_pred eEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCC
Q 006746 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND 189 (632)
Q Consensus 110 vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~e 189 (632)
+||||++++++|+.+++++.+++... .+|+++.+.++....+.++++|+.+++++|++++
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~- 60 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEY-------------------FGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD- 60 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhc-------------------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 69999999999999999987765321 1444433223334567899999999999999865
Q ss_pred ccEEEeCCHHHHHHHHHhhCC--CCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhc
Q 006746 190 YGMVFTANRTSAFKLLAESYP--FMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 190 y~vvft~naT~al~lv~~sl~--~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
.|+||+|+|+|+++++.++- +.++++|++ ..+|++....| ..++++|++++.++.+ +++.++.+++++.|+++
T Consensus 61 -~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~--~~~~~~G~~v~~v~~~-~~g~~~~~~l~~~i~~~ 136 (379)
T TIGR03402 61 -EIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLC--QHLEKQGYKVTYLPVD-EEGRLDLEELRAAITDD 136 (379)
T ss_pred -eEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHH--HHHHHcCCEEEEEccC-CCCcCCHHHHHHhcCCC
Confidence 79999999999999988752 345677765 56888643333 3445689999999987 56789999999999764
Q ss_pred CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceE
Q 006746 267 GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFG 345 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G 345 (632)
++++++++++|.||.++|++ |.++||++|+++++|++|++|+ .++|+..+++||+++|+||++| |.|+|
T Consensus 137 ------~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~G~g 206 (379)
T TIGR03402 137 ------TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGK--IPIDLKEMNIDMLSLSGHKLHG--PKGVG 206 (379)
T ss_pred ------cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccc--cccCcccCCCCEEEEcHHHcCC--CCceE
Confidence 48999999999999999999 9999999999999999999997 6999999999999999999888 99999
Q ss_pred EEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhh
Q 006746 346 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS 425 (632)
Q Consensus 346 ~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~ 425 (632)
+||++++. .+.|...||... . . ++.||+|++.+.
T Consensus 207 ~l~v~~~~--~~~p~~~g~~~~------------~-------------~-------------------~~~gt~~~~~~~ 240 (379)
T TIGR03402 207 ALYIRKGT--RFRPLLRGGHQE------------R-------------G-------------------RRAGTENVPGIV 240 (379)
T ss_pred EEEECCCC--CCCCcccCCccC------------C-------------C-------------------cCCCCccHHHHH
Confidence 99999875 355544432210 0 0 135778888888
Q ss_pred HhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-cCCCCCCCCCcEEEECCCCCC
Q 006746 426 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRF 504 (632)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~-l~h~~~~G~p~v~Iygp~~~~ 504 (632)
++. ++++++.+ +++.+.+|.+.|.++|+++|.+ + |.++++++.. .
T Consensus 241 ~l~------------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~--------~~~~~~~~~~-~ 286 (379)
T TIGR03402 241 GLG------------------------KAAELATE-HLEEENTRVRALRDRLEAGLLARI--------PDARLNGDPT-K 286 (379)
T ss_pred HHH------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhC--------CCEEEeCCCc-c
Confidence 887 89999876 6899999999999999999986 6 6789999753 2
Q ss_pred CCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCc
Q 006746 505 DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 584 (632)
Q Consensus 505 ~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 584 (632)
..+++++|++.+ +++..|.+.++++||.+++|++|+.+..... ++++.... . .....+
T Consensus 287 ~~~~~~~~~~~~-----~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~-----~~~~~lg~--~----------~~~~~~ 344 (379)
T TIGR03402 287 RLPNTVNISFEY-----IEGEAILLLLDMEGICASSGSACTSGSLEPS-----HVLRAMGV--P----------HTAAHG 344 (379)
T ss_pred CCCCEEEEEecC-----CCHHHHHHhhccCCEEEEchhhcCCCCCCcC-----HHHHHcCC--C----------hhhcCc
Confidence 235799999976 6778888888889999999999998754321 22222110 0 112357
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 585 VVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 585 ~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.||+|+|+|||.|||++|++.|++.++.
T Consensus 345 ~vR~S~~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 345 SIRFSLSRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=380.67 Aligned_cols=367 Identities=17% Similarity=0.159 Sum_probs=290.5
Q ss_pred eEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC-CCC
Q 006746 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI-SEN 188 (632)
Q Consensus 110 vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a-~~~ 188 (632)
+||||+++++.++.+++++..++.. ..+||++.+.|+......++++|+++++.+|+ +++
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~-------------------~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~ 61 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCD-------------------IYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLD 61 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHh-------------------cCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 6999999999999999998775532 12677766667766678889999999999998 444
Q ss_pred CccEEEeCCHHHHHHHHHhhCCC----CC-CCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHH
Q 006746 189 DYGMVFTANRTSAFKLLAESYPF----MS-VKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKM 262 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~~----~~-gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~ 262 (632)
+|+||+|+|+++++++.++.+ ++ +++|++ ..+|++....| ..++..|++++.++++ +++.++.++++++
T Consensus 62 --~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~--~~~~~~G~~v~~v~~~-~~g~~d~~~l~~~ 136 (382)
T TIGR03403 62 --DIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATC--AFLESLGVEVTYLPIN-EQGTITAEQVREA 136 (382)
T ss_pred --eEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHH--HHHHHCCCEEEEEecC-CCCCCCHHHHHHh
Confidence 799999999999999998742 45 456664 56888743333 3557799999999997 5678899999999
Q ss_pred HHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCC
Q 006746 263 VVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 263 i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
++++ ++++++++++|+||..+|++ |.++|+++|+++++|++|.+|. .++|+.++++|++++|+||++| |
T Consensus 137 i~~~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p 206 (382)
T TIGR03403 137 ITEK------TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGK--IPVDVQKAGVDFLSFSAHKFHG--P 206 (382)
T ss_pred cccC------CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCC--CccCccccCCCEEEEcchhhCC--C
Confidence 8764 38999999999999999999 9999999999999999999987 5899999999999999999998 9
Q ss_pred CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCccc
Q 006746 342 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 421 (632)
Q Consensus 342 ~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~ 421 (632)
.|+|+||||++. .+.|.+.||. |. . . ++.||+|+
T Consensus 207 ~G~g~l~vr~~~--~~~p~~~g~~----------~~-~--------------~-------------------~~~gt~~~ 240 (382)
T TIGR03403 207 KGVGGLYIRKGV--ELTPLFHGGE----------HM-G--------------G-------------------RRSGTLNV 240 (382)
T ss_pred CceEEEEECCCC--CCCCcccCCC----------CC-C--------------C-------------------cccCCcCh
Confidence 999999999875 3555433321 10 0 0 13577788
Q ss_pred chhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCC
Q 006746 422 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 501 (632)
Q Consensus 422 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~ 501 (632)
+.+.++. .+|++..+ +++.+.+|++.|.++|++.|.++ |.++++++.
T Consensus 241 ~~~~al~------------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~--------~~~~~~~~~ 287 (382)
T TIGR03403 241 PYIVAMG------------------------EAMRLANE-YLDFEKSHVRRLRDRLEDALLEL--------PDVFVVGDR 287 (382)
T ss_pred HHHHHHH------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcC--------CCEEEECCC
Confidence 8888887 89988876 48999999999999999999987 679999985
Q ss_pred CCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCC
Q 006746 502 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 581 (632)
Q Consensus 502 ~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 581 (632)
. ...+++++|++.+ ++++.+.+.++++||.+|+|++|+....+.. .++.+... + ...
T Consensus 288 ~-~~~~~~~~~~~~~-----~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~-----~v~~~~g~--~----------~~~ 344 (382)
T TIGR03403 288 E-HRVPNTILISIKG-----VEGEAMLWDLNKAGIAASTGSACASEDLEAN-----PVMVAIGA--D----------KEL 344 (382)
T ss_pred C-CCcCCEEEEEeCC-----CCHHHHHHhhccCCEEEEchhccCCCCCCcC-----HHHHHcCC--C----------hHH
Confidence 3 2235699999876 6788887777889999999999987633221 22222110 0 012
Q ss_pred CCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 582 GITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 582 ~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..++||+|+|+|||++||++|+++|++.+..
T Consensus 345 ~~~~iR~s~~~~~t~~did~~~~~l~~~~~~ 375 (382)
T TIGR03403 345 AHTAIRLSLSRFTTEEEIDYTIEVFKKAVQR 375 (382)
T ss_pred hCeeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999987654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=371.32 Aligned_cols=367 Identities=17% Similarity=0.157 Sum_probs=280.7
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccc-cccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~-~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
+..+||||++.+++|+.+++++..++... .+|+++. ...+....+.++++|+.+++++|+
T Consensus 2 ~~~~yld~aa~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~ 62 (402)
T TIGR02006 2 KLPIYLDYAATTPVDPRVAEKMMPYLTEK-------------------FGNPASRSHSFGWEAEEAVENARNQVAELIGA 62 (402)
T ss_pred CccEEeeCCcCCCCCHHHHHHHHHHHHhc-------------------CCCCChhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34799999999999999999987654321 1344421 111222357889999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCC---CCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYP---FMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~---~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
+++ +|+||+|+|+++++++.++. +++|++|++ ..+|++....| ..+++.|++++.++.+ +++.+++++|++
T Consensus 63 ~~~--~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~--~~~~~~g~~v~~v~~~-~~~~~d~~~l~~ 137 (402)
T TIGR02006 63 DSR--EIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTC--RYLEREGFEVTYLPPK-SNGLIDLEELKA 137 (402)
T ss_pred CCC--eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHH--HHHHhcCCEEEEEccC-CCCcCCHHHHHH
Confidence 875 69999999999999988763 467898765 46777633333 3346689999999987 677899999999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCC
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGEN 340 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~ 340 (632)
++.++ ++++++++++|+||..+|++ |.++||++|++++||++|++|. .++|+..+++|++++|+||++|
T Consensus 138 ~l~~~------~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~--~~~~~~~~~~D~~~~s~~K~~g-- 207 (402)
T TIGR02006 138 AIRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGK--IPINVNELKVDLMSISGHKIYG-- 207 (402)
T ss_pred hcCCC------CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCC--cccCccccCCCEEEEehhhhcC--
Confidence 88754 48999999999999999999 9999999999999999999998 6899999999999999999988
Q ss_pred CCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcc
Q 006746 341 PSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLE 420 (632)
Q Consensus 341 P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~ 420 (632)
|.|+|+||++++....+.+...||.. + ..+ +.||++
T Consensus 208 p~G~G~l~~~~~~~~~~~~~~~g~~~---------~----------------~~~-------------------~~gt~~ 243 (402)
T TIGR02006 208 PKGIGALYVRRKPRVRLEALIHGGGH---------E----------------RGM-------------------RSGTLP 243 (402)
T ss_pred CCceEEEEEccCCCCCCCceecCCCc---------c----------------CCc-------------------cCCCcc
Confidence 99999999999877666665443211 0 011 246677
Q ss_pred cchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECC
Q 006746 421 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGP 500 (632)
Q Consensus 421 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp 500 (632)
++.+.++. .+|+++.+ +++.+.+|.+.|.++|++.|.++ |.++++++
T Consensus 244 ~~~~~al~------------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~--------~~v~~~~~ 290 (402)
T TIGR02006 244 THQIVGMG------------------------EAFRIAKE-EMAQDTAHVLALRDRLLNGIKSI--------EEVYLNGD 290 (402)
T ss_pred HHHHHHHH------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcC--------CCEEEeCC
Confidence 77788887 89998875 79999999999999999999987 67899987
Q ss_pred CCCCCCC-c--EEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccc
Q 006746 501 KIRFDRG-P--ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD 577 (632)
Q Consensus 501 ~~~~~rg-~--ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 577 (632)
. ..|. + +++|+ . ++...+.+.+ ++|.+++|++|+++..... .++++..+.
T Consensus 291 ~--~~~~p~~~~v~f~--~-----~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~-----~~l~~lg~~----------- 343 (402)
T TIGR02006 291 L--EHRVPGNLNVSFN--Y-----VEGESLIMAL--KDLAVSSGSACTSASLEPS-----YVLRALGIN----------- 343 (402)
T ss_pred c--cccCCCeEEEEEe--C-----cCHHHHHHhc--CCEEEechhhcCCCCCCcc-----HHHHHcCCC-----------
Confidence 4 2343 3 45555 3 3444444333 5999999999987643221 122221100
Q ss_pred cCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 578 KANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 578 ~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....++||+|+|+|||.|||++|+++|+++++.
T Consensus 344 -~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~ 377 (402)
T TIGR02006 344 -DELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDK 377 (402)
T ss_pred -hhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1123479999999999999999999999998765
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=365.98 Aligned_cols=377 Identities=19% Similarity=0.250 Sum_probs=291.0
Q ss_pred HHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHH
Q 006746 93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLE 172 (632)
Q Consensus 93 ~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~ 172 (632)
+.++|+ +||.++....+|||++|.+++|+.+++++.+++.... .|+.+.+.......+.+
T Consensus 3 ~~~~r~-~f~~~~~~~~~yl~~~~~~~~p~~v~~a~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 62 (397)
T TIGR01976 3 VEAVRG-QFPALADGDRVFFDNPAGTQIPQSVADAVSAALTRSN-------------------ANRGGAYESSRRADQVV 62 (397)
T ss_pred hhHHHh-hCCcCCCCCeEEecCCccCCCCHHHHHHHHHHHHhcC-------------------CCCCCCchHHHHHHHHH
Confidence 456776 7998842126999999999999999999876543210 12211111111124678
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC--CCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY--PFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl--~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
+++|+.+++++|++++ .|+|++|+|++++++..++ .+++||+|++. .+|++....| ...+++.|++++.+++++
T Consensus 63 ~~l~~~ia~~~~~~~~--~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~-~~~~~~~g~~~~~~~~~~ 139 (397)
T TIGR01976 63 DDAREAVADLLNADPP--EVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPW-LQAAERAGAKVKWARVDE 139 (397)
T ss_pred HHHHHHHHHHcCCCCC--eEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHH-HHHHHhcCCEEEEEeccc
Confidence 9999999999999865 5999999999999998887 57899997764 5787743344 466788999999999875
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcE
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDF 328 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df 328 (632)
+++.++.++++++|+++ ++++++++++|+||.++|++ |+++||++|+++++|++|++|. .++|+.++++|+
T Consensus 140 ~~~~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~--~~~~~~~~~~d~ 211 (397)
T TIGR01976 140 ATGELHPDDLASLLSPR------TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH--GLIDVQATGADF 211 (397)
T ss_pred cCCCcCHHHHHHhcCCC------ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc--cCCCHHHcCCCE
Confidence 46789999999998754 48999999999999999999 9999999999999999999886 588888899999
Q ss_pred EEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCcc
Q 006746 329 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP 408 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~ 408 (632)
+++|+||++| |. +|+++++++.++.+.+.... |.... .+.++ +
T Consensus 212 ~~~s~~K~~g--~~-~G~l~~~~~~~~~l~~~~~~------------~~~~~----------~~~~~---~--------- 254 (397)
T TIGR01976 212 LTCSAYKFFG--PH-MGILWGRPELLMNLPPYKLT------------FSYDT----------GPERF---E--------- 254 (397)
T ss_pred EEEechhhcC--Cc-eEEEEEcHHHHhhCCCcccc------------CccCC----------Ccchh---c---------
Confidence 9999999999 74 99999999987777653211 10000 00111 2
Q ss_pred chhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC--------------HHHHHHHHHHHH
Q 006746 409 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG--------------LTMISRRGRCLI 474 (632)
Q Consensus 409 ~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G--------------l~~I~~r~~~L~ 474 (632)
.||++++.+.++. .|++++.++| ++.+.+|+..|.
T Consensus 255 -------~gt~~~~~~~~l~------------------------~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (397)
T TIGR01976 255 -------LGTPQYELLAGVV------------------------AAVDYLAGLGESANGSRRERLVASFQAIDAYENRLA 303 (397)
T ss_pred -------CCCCCHHHHHHHH------------------------HHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHH
Confidence 4556666677776 8999888876 788999999999
Q ss_pred HHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 475 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 475 ~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
+++++.|.++ +.++++++.+...++++++|++.+ +++..+.+.+.++||.+++|++|........
T Consensus 304 ~~l~~~L~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~-- 368 (397)
T TIGR01976 304 EYLLVGLSDL--------PGVTLYGVARLAARVPTVSFTVHG-----LPPQRVVRRLADQGIDAWAGHFYAVRLLRRL-- 368 (397)
T ss_pred HHHHHHHhcC--------CCEEEeCCCCccCCCceEEEEeCC-----cCHHHHHHHHHHCCeEEEeCccchHHHHHHh--
Confidence 9999999987 558999885445688999998865 4566676666778999999999987653322
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHH
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 606 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l 606 (632)
+ ...+.+.||||+|+|||.+||++|++.|
T Consensus 369 ------------~-----------~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 369 ------------G-----------LNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred ------------C-----------CCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 0 0113468999999999999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=367.18 Aligned_cols=384 Identities=14% Similarity=0.137 Sum_probs=277.2
Q ss_pred hhHHHHHHhhccCcCC---CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 006746 91 YQIDQIRAKEYYQLSL---SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ 167 (632)
Q Consensus 91 ~~~d~iR~~ef~~L~~---~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~ 167 (632)
..++.+|+ +||.+.. ++.+|||+++.|+.|..+.+++..++.... .+.+..+..|..
T Consensus 8 ~~~~~~r~-~f~~~~~~~~~~~iyld~~a~g~~p~~v~~a~~~~~~~~~-------------------~~~~~~~~~~~~ 67 (406)
T TIGR01814 8 DPLRALRD-EFHLPKIGDENAVIYLDGNSLGLMPKAARNALKEELDKWA-------------------KIAIRGHNTGKA 67 (406)
T ss_pred ChHHHHHH-hcCCCcccCCCCcEEecCCCcCcCcHHHHHHHHHHHHHHH-------------------HhhhccCccCCC
Confidence 34667785 6996621 357999999999999999999876553211 011101111111
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC---eEEEe-ccccchhhHHHHHHHHhcCCEE-
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK---NLLTV-YDYESEAVEAMIRTSEKRGARV- 242 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd---~ilt~-~d~~s~~v~~~~~~a~~~G~~v- 242 (632)
......+.++++ +++|++++ +|+||+|+|+++++++.++ +++++ +|++. .+|+++...| ...+++.|+++
T Consensus 68 ~~~~~~~~~~~~-~l~g~~~~--~v~~~~~~t~~l~~~~~~~-~~~~~~~~~i~~~~~~~~s~~~~~-~~~~~~~g~~~~ 142 (406)
T TIGR01814 68 PWFTLDESLLKL-RLVGAKED--EVVVMNTLTINLHLLLASF-YKPTPKRYKILLEAKAFPSDHYAI-ESQLQLHGLTVE 142 (406)
T ss_pred Chhhhhhhhccc-cccCCCCC--cEEEeCCchHHHHHHHHHh-cCCcCCccEEEecCCCCChHHHHH-HHHHHhcCCCcc
Confidence 112223444445 89999876 7999999999999999998 55542 46654 6888755555 44567789987
Q ss_pred ---EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC
Q 006746 243 ---MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS 318 (632)
Q Consensus 243 ---~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ 318 (632)
+.++.+ .++.++++++++.+... .++++||+++|++|.||.++|++ |+++||++|++++||++|++|+ .+
T Consensus 143 ~~~~~~~~~-~~g~~~~~~l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~--~~ 216 (406)
T TIGR01814 143 ESMVQIEPR-EEETLRLEDILDTIEKN---GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGN--VP 216 (406)
T ss_pred cceEEeccC-CCCccCHHHHHHHHHhc---CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCC--cc
Confidence 455554 45678999999888632 13579999999999999999999 9999999999999999999998 69
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC--CceeecccccccccccccCCCCCCccccchhhh
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
+|+..+++||+++|+|||++. |.| |++||+++....+.|...| +... .. .+.... .+.. .+.+
T Consensus 217 id~~~~gvD~~~~s~hK~l~g-~pG-~~l~v~~~~~~~~~p~~~g~~~~~~---~~--~~~~~~----~~~~--~~~~-- 281 (406)
T TIGR01814 217 LDLHDWGVDFACWCTYKYLNA-GPG-AGAFVHEKHAHTERPRLAGWWGHAR---PT--RFKMDN----TLGL--IPCG-- 281 (406)
T ss_pred cccccCCCCEEEEcCccccCC-CCC-eEEEEehhhhhhcCCCCCcccCCCC---cc--cccccc----ccCC--Cccc--
Confidence 999999999999999996643 449 8899988766566665444 1100 00 000000 0000 0000
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
.+.||+|++.+.++. ++|+++.++|++++.+|.+.|.++
T Consensus 282 -----------------~~~GT~~~~~~~~l~------------------------~al~~~~~~g~~~i~~~~~~l~~~ 320 (406)
T TIGR01814 282 -----------------FRISNPPILSVAALR------------------------GSLDIFDQAGMEALRKKSLLLTDY 320 (406)
T ss_pred -----------------eeeCCccHHHHHHHH------------------------HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 146888999999997 999999999999999999999999
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~ 556 (632)
|++.|.++.- |.|.++|++|.....|+++++|.+. ++++.+.+.+.++||.+..
T Consensus 321 l~~~l~~~~~----~~~~~~i~~~~~~~~r~~~v~~~~~------~~~~~~~~~L~~~gi~v~~---------------- 374 (406)
T TIGR01814 321 LEELIKARCG----GPPVLTIITPRDHAQRGCQLSLTHP------VPGKAVFQALIKRGVIGDK---------------- 374 (406)
T ss_pred HHHHHHhhcC----CCCceEEeCCCChhhcCCeEEEEec------CCHHHHHHHHHHCCEEEec----------------
Confidence 9999987510 1356999998644457899999886 2345666656677987631
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+.||+|+ |+|||.+||+++++.|++++|
T Consensus 375 ------------------------~~~~~iRiS~~~~~nt~~did~l~~~l~~~~~ 406 (406)
T TIGR01814 375 ------------------------REPSVIRVAPVPLYNTFVDVYDAVNVLEEILD 406 (406)
T ss_pred ------------------------cCCCeEEEechhccCCHHHHHHHHHHHHHHhC
Confidence 1235999999 799999999999999998875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=349.38 Aligned_cols=369 Identities=16% Similarity=0.137 Sum_probs=281.0
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
++|||+++++++|+.+++++.+++.. .++|+++.+..|....++++++|+.+++++|++++
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~ 61 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQKAASQ-------------------YFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ 61 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHHHHHh-------------------cCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 48999999999999999998765432 11455544433444567899999999999999865
Q ss_pred CccEEEeCCHHHHHHHHHhhCC---CCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 189 DYGMVFTANRTSAFKLLAESYP---FMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~---~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
+|+||+|+|+++.+++.++- .++|++|++ ..+|++. ... ...++..|++++.++++ +++.+++++|++++.
T Consensus 62 --~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~-~~~-~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~ 136 (381)
T PRK02948 62 --GIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASI-HSY-FQSLESQGYTVTEIPVD-KSGLIRLVDLERAIT 136 (381)
T ss_pred --eEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHH-HHH-HHHHHhCCCEEEEEeeC-CCCCCCHHHHHHhcC
Confidence 79999999999998887762 256888765 4578763 333 34567789999999987 567899999999886
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 343 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G 343 (632)
++ ++|+++++++|+||..+|++ |.++|+++|++++||++|.+|. .++|+..+++|++++|+||++| |.|
T Consensus 137 ~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~--~~~~~~~~~~d~~~~s~~K~~g--p~G 206 (381)
T PRK02948 137 PD------TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGK--LPIDVFEMGIDSLSVSAHKIYG--PKG 206 (381)
T ss_pred CC------CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccc--cccCcccCCCCEEEecHHhcCC--CCc
Confidence 54 48999999999999999999 9999999999999999999987 5889999999999999999999 889
Q ss_pred eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 344 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 344 ~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
+|++|++++. .+.+...++.. . ..+ +.||+|++.
T Consensus 207 ~G~l~~~~~~--~~~~~~~~~~~---------~----------------~~~-------------------~~~t~~~~~ 240 (381)
T PRK02948 207 VGAVYINPQV--RWKPVFPGTTH---------E----------------KGF-------------------RPGTVNVPG 240 (381)
T ss_pred EEEEEEcCCC--CCCCcccCCCC---------C----------------CCc-------------------CCCCccHHH
Confidence 9999999875 12222111100 0 001 256677888
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 503 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~ 503 (632)
+.++. .+|+.+.+ +++.+.+|++.|.++|++.|+++ |.. +.++++. .
T Consensus 241 ~~a~~------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~------~~~-v~~~~~~-~ 287 (381)
T PRK02948 241 IAAFL------------------------TAAENILK-NMQEESLRFKELRSYFLEQIQTL------PLP-IEVEGHS-T 287 (381)
T ss_pred HHHHH------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC------CCC-EEEeCCC-c
Confidence 88887 88887754 58999999999999999999998 433 4455432 2
Q ss_pred CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCC
Q 006746 504 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 583 (632)
Q Consensus 504 ~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
.....+++|++.+ ++...+...++++||.++.|++|+.++.... .++.+... . .....
T Consensus 288 ~~~~~i~~~~~~~-----~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~-----~~~~~~~~-~-----------~~~~~ 345 (381)
T PRK02948 288 SCLPHIIGVTIKG-----IEGQYTMLECNRRGIAISTGSACQVGKQEPS-----KTMLAIGK-T-----------YEEAK 345 (381)
T ss_pred cCcCCEEEEEeCC-----CCHHHHHHhcccCCEEEEchHhcCCCCCCCC-----HHHHHcCC-C-----------hHHhC
Confidence 3356789999876 5667666666788999999999987643211 22222110 0 01124
Q ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 584 TVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 584 ~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.||+|+|+|||.|||++|++.|++.++.
T Consensus 346 ~~lRis~~~~~t~~di~~l~~~l~~~~~~ 374 (381)
T PRK02948 346 QFVRFSFGQQTTKDQIDTTIHALETIGNQ 374 (381)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999987653
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=343.34 Aligned_cols=370 Identities=19% Similarity=0.239 Sum_probs=281.8
Q ss_pred eEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccc-cccccchhHHHHHHHHHHHHHcCCCC
Q 006746 110 TCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 110 vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~-~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
||||+++.+ +.|..+++++.+++.... +|++.. +..+......++++|+.|++++|+++
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 61 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYG-------------------GSPGRGRYRLALRASREVEETRQLLAKLFNAPS 61 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcC-------------------CCCCcccchHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 699999987 688899998766443210 111110 00001124678899999999999974
Q ss_pred CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhc
Q 006746 188 NDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
. ..|+||+|+|+++++++.++ +++|++|++ ..+|++ ....+...++..|++++.++.+ +++.++.++|+++++++
T Consensus 62 ~-~~v~~~~g~t~al~~~~~~~-~~~gd~vl~~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~~~~~ 137 (376)
T TIGR01977 62 S-AHVVFTNNATTALNIALKGL-LKEGDHVITTPMEHNS-VARPLECLKEQIGVEITIVKCD-NEGLISPERIKRAIKTN 137 (376)
T ss_pred C-CeEEEeCCHHHHHHHHHHhc-cCCCCEEEECcchhhH-HHHHHHHHHHHcCcEEEEEecC-CCCCcCHHHHHHhcCCC
Confidence 3 37999999999999999996 789999775 457765 3333355677789999999987 56778999999998654
Q ss_pred CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceE
Q 006746 267 GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFG 345 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G 345 (632)
++++++++++|.||.++|++ |.++||++|+++++|++|++|. .++|+..+++||+++|+||+++. |.|+|
T Consensus 138 ------~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~--~~~~~~~~~~D~~~~s~~K~l~~-p~g~g 208 (376)
T TIGR01977 138 ------TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGV--IPIDMTELAIDMLAFTGHKGLLG-PQGTG 208 (376)
T ss_pred ------CeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCc--cCCCchhcCCCEEEecccccccC-CCCce
Confidence 48999999999999999999 9999999999999999999997 68999999999999999997654 99999
Q ss_pred EEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhh
Q 006746 346 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS 425 (632)
Q Consensus 346 ~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~ 425 (632)
+++++++. .+++...+|... ...+|.... .+ +.++ +.||++++.+.
T Consensus 209 ~l~~~~~~--~~~~~~~~~~~~----~~~~~~~~~----~~-----~~r~-------------------~~~t~~~~~~~ 254 (376)
T TIGR01977 209 GLYIREGI--KLKPLKSGGTGS----HSALIDQPS----EL-----PDRF-------------------ESGTLNTPGIA 254 (376)
T ss_pred EEEEcCCc--CcCceecCCCcc----ccccccccc----cc-----hhhc-------------------cCCCCCHHHHH
Confidence 99999986 244433332210 001111000 00 0011 24567777788
Q ss_pred HhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCC
Q 006746 426 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 505 (632)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~ 505 (632)
++. ++|+++.++|++++.+|.+.|++++++.|.++ +.+++++|.+...
T Consensus 255 a~~------------------------~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~--------~~~~~~~~~~~~~ 302 (376)
T TIGR01977 255 GLN------------------------AGIKFIEKIGIANIAKKECMLTEKLLNGLREI--------NKVKIYGPADPAN 302 (376)
T ss_pred HHH------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC--------CCeEEeCCCCccc
Confidence 887 89999999999999999999999999999887 6689999865455
Q ss_pred CCcEEEEEEccCCCCccCHHHHHHHHHh-CCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCc
Q 006746 506 RGPALAFNVFDWKREKIEPVLVQKLADR-ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 584 (632)
Q Consensus 506 rg~ivaFnv~~~~G~~i~~~~V~kla~~-~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 584 (632)
++++++|++.+ +++..+.+.+.+ +||.++.|.+|..+..... +..+.+
T Consensus 303 ~~~~v~~~~~~-----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~--------------------------g~~~~~ 351 (376)
T TIGR01977 303 RVGVVSFTVEG-----IDSEEVADILDEKFDIATRTGLHCAPLAHKTI--------------------------GTFATG 351 (376)
T ss_pred cCCeEEEEECC-----CCHHHHHHHHhccCCEEEEcccccchHHHHHh--------------------------CCCCCC
Confidence 78999999976 466667665554 5999999999987643221 122456
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHH
Q 006746 585 VVTASLGYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 585 ~VRvSlg~~~t~eDV~rlv~~l~~ 608 (632)
.||+|++.++|.+||++|+++|++
T Consensus 352 ~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 352 TIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred eEEEecCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=334.44 Aligned_cols=367 Identities=19% Similarity=0.247 Sum_probs=283.1
Q ss_pred eEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc-ccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 110 vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s-~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
+||||++.+++|+.+++++.+++... ++||++ .+..+....+.++++|+.+++++|++.
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~- 60 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHY-------------------NANVHRGVHELSARATDAYEAAREKVARFINAPS- 60 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhc-------------------CCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCC-
Confidence 59999999999999999987765321 134443 222233346788999999999999972
Q ss_pred CccEEEeCCHHHHHHHHHhhCCCC--CCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 189 DYGMVFTANRTSAFKLLAESYPFM--SVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~~~--~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
...|+||+|+|+|+++++.++... +|++|++ ..+|++. +..+...++..|++++.++.+ .++.++.++|++.+.+
T Consensus 61 ~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~-~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~ 138 (373)
T cd06453 61 PDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSN-IVPWQQLAERTGAKLKVVPVD-DDGQLDLEALEKLLTE 138 (373)
T ss_pred CCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHH-HHHHHHHHhhcCcEEEEeecC-CCCCcCHHHHHHHhcC
Confidence 237999999999999999998654 8899775 4567653 333355667789999999998 6778999999999976
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCce
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF 344 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~ 344 (632)
+ +++|++++++|+||...|++ |+++|+++|+++++|+++..|. .++++..+++|++++|+||++| |.|+
T Consensus 139 ~------~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~--~~g~ 208 (373)
T cd06453 139 R------TKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGH--MPVDVQDLGCDFLAFSGHKMLG--PTGI 208 (373)
T ss_pred C------ceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCc--eeeeccccCCCEEEeccccccC--CCCc
Confidence 4 48999999999999999999 9999999999999999998887 5788888899999999999999 5699
Q ss_pred EEEEEeCCCccccCCCCCCCce-eecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 345 GCLFVKKSTVPILVDNTSSGMV-SLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 345 G~L~Vr~~~~~~L~~~~~gG~v-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
|+++++++.++.+.+...||.. .........|. ..+.++ ..|++++..
T Consensus 209 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~~~~~-------------------~~~t~~~~~ 257 (373)
T cd06453 209 GVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYA------------DLPHKF-------------------EAGTPNIAG 257 (373)
T ss_pred EEEEEchHHhhcCCCeecCCCccccccccccccC------------CCcccc-------------------CCCCCCHHH
Confidence 9999999988888775444321 10000000000 000000 246677777
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 503 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~ 503 (632)
+.++. .+++.+.+.|++.+.+|.+.+.+++++.|.++ |.++++.+.
T Consensus 258 ~~al~------------------------~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~~-- 303 (373)
T cd06453 258 AIGLG------------------------AAIDYLEKIGMEAIAAHEHELTAYALERLSEI--------PGVRVYGDA-- 303 (373)
T ss_pred HHHHH------------------------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC--------CCeEEeCCc--
Confidence 77776 89999998999999999999999999999887 668888653
Q ss_pred CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCC
Q 006746 504 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 583 (632)
Q Consensus 504 ~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
..+++++.|++.+ ++.+.+.+.+.++||.++.|..|..+..... + ..
T Consensus 304 ~~~~~~~~~~~~~-----~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~---------------------------~-~~ 350 (373)
T cd06453 304 EDRAGVVSFNLEG-----IHPHDVATILDQYGIAVRAGHHCAQPLMRRL---------------------------G-VP 350 (373)
T ss_pred cccCCeEEEEECC-----cCHHHHHHHHHHCCEEeccCccchhHHHHHh---------------------------C-CC
Confidence 3468899999876 4666777666779999999998887543211 0 23
Q ss_pred cEEEEccCCCCCHHHHHHHHHHH
Q 006746 584 TVVTASLGYLANFEDVYRLWAFV 606 (632)
Q Consensus 584 ~~VRvSlg~~~t~eDV~rlv~~l 606 (632)
+.||+|+|++||.+|+++|+++|
T Consensus 351 ~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 351 GTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CeEEEEecCCCCHHHHHHHHhhC
Confidence 69999999999999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=335.12 Aligned_cols=368 Identities=18% Similarity=0.161 Sum_probs=274.3
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccc-cccchhHHHHHHHHHHHHHcCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL-HGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~-~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
..+||||++.+++|+.+++++..++.... .++|+++... .+....+.++++|+.+++++|++
T Consensus 3 ~~iyld~a~~~~~~~~v~~a~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~ 65 (404)
T PRK14012 3 LPIYLDYSATTPVDPRVAEKMMPYLTMDG-----------------TFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD 65 (404)
T ss_pred ceEEecCcCCCCCCHHHHHHHHHHHHhcc-----------------cCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 46999999999999999999876543110 0134443211 12223577899999999999998
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCC---CCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHH
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYP---FMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKM 262 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~---~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~ 262 (632)
++ +|+||+|+|+|+++++.++. +++||+|++ ..+|++....| . .+++.|++++.++++ +++.+++++|+++
T Consensus 66 ~~--~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~-~-~~~~~g~~~~~v~~~-~~g~~d~~~l~~~ 140 (404)
T PRK14012 66 PR--EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTC-R-QLEREGFEVTYLDPQ-SNGIIDLEKLEAA 140 (404)
T ss_pred cC--eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHH-H-HHHhCCCEEEEEccC-CCCcCCHHHHHHh
Confidence 65 69999999999999987763 578999765 56887643333 3 345679999999988 6788999999999
Q ss_pred HHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCC
Q 006746 263 VVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 263 i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
|++++ +++++++++|+||..+|++ |.++||++|+++++|++|++|. .++|+..+++|++++|+||++| |
T Consensus 141 i~~~t------~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p 210 (404)
T PRK14012 141 MRDDT------ILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGK--VPIDLSKLKVDLMSFSAHKIYG--P 210 (404)
T ss_pred cCCCC------EEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCC--cccCcccCCCCEEEEehhhccC--C
Confidence 97654 8999999999999999999 9999999999999999999997 5788888999999999999998 8
Q ss_pred CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCccc
Q 006746 342 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 421 (632)
Q Consensus 342 ~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~ 421 (632)
.|+|+||++++....+.+...||... .++ +.||+++
T Consensus 211 ~g~G~l~~~~~~~~~~~~~~~g~~~~-------------------------~~~-------------------~~gt~~~ 246 (404)
T PRK14012 211 KGIGALYVRRKPRVRLEAQMHGGGHE-------------------------RGM-------------------RSGTLPT 246 (404)
T ss_pred CceEEEEEecCCCCCCCceecCCCcc-------------------------CCc-------------------cCCCcCH
Confidence 89999999998765565544442110 001 1344555
Q ss_pred chhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCC
Q 006746 422 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 501 (632)
Q Consensus 422 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~ 501 (632)
+.+.++. ++++.++. +++.+.+|.+.|.+++.+.|.++ +.++++++.
T Consensus 247 ~~~~~l~------------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~--------~~i~~~~~~ 293 (404)
T PRK14012 247 HQIVGMG------------------------EAARIAKE-EMATENERIRALRDRLWNGIKDI--------EEVYLNGDL 293 (404)
T ss_pred HHHHHHH------------------------HHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcC--------CCEEEeCCc
Confidence 6667776 78887754 78889999999999999999887 668888763
Q ss_pred CCCCCC-c--EEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccccc
Q 006746 502 IRFDRG-P--ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 578 (632)
Q Consensus 502 ~~~~rg-~--ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 578 (632)
. .+. + .++|++.+ ...+.+.+ ++|.+++|.+|.+...+.... +.. ++- .
T Consensus 294 ~--~~~~~~~~~~~~~~~-------~~~~~~~l--~~~~i~~g~~~~~~~~~~~~~-----~~~---~~~---------~ 345 (404)
T PRK14012 294 E--QRVPGNLNVSFNYVE-------GESLIMAL--KDLAVSSGSACTSASLEPSYV-----LRA---LGL---------N 345 (404)
T ss_pred c--ccCCCEEEEEEeCcC-------HHHHHHhC--CCeEEEchhhhCCCCCCCCHH-----HHH---cCC---------C
Confidence 2 232 2 45666533 23343333 489999999998754322210 110 000 0
Q ss_pred CCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 579 ANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 579 ~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....++||+|+|+++|.+||+++++.|++++..
T Consensus 346 ~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~ 379 (404)
T PRK14012 346 DELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGK 379 (404)
T ss_pred hhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1224579999999999999999999999998765
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=336.66 Aligned_cols=360 Identities=14% Similarity=0.114 Sum_probs=263.7
Q ss_pred ccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 101 YYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 101 f~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.|.|. ...+|||.+.+++.|..|++++..... ++.|. +....++++++|+.++
T Consensus 6 ~~~~~-~~~~~f~~Gp~~~~~~~v~~a~~~~~~----------------------~~~hr----~~~f~~~~~~~r~~l~ 58 (378)
T PRK03080 6 IPALR-PADPRFSSGPCKKRPGWQLEALADALL----------------------GRSHR----QKPVKALLKRVIEGTR 58 (378)
T ss_pred CCCcC-CCCCCcCCCCcCCChHHHHHHHHhhhc----------------------ccCcC----CHHHHHHHHHHHHHHH
Confidence 34553 558899999999999999999764221 11111 1124689999999999
Q ss_pred HHcCCCCCCccEEEeC-CHHHHHHHHHhhCCCCC-CCeEEEeccccchhhHHHHHHHHhcCC-EEEEEeccCCccccCHH
Q 006746 181 DFLNISENDYGMVFTA-NRTSAFKLLAESYPFMS-VKNLLTVYDYESEAVEAMIRTSEKRGA-RVMSAEFSWPRLRINSE 257 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~-naT~al~lv~~sl~~~~-gd~ilt~~d~~s~~v~~~~~~a~~~G~-~v~~v~~~~~~~~i~~~ 257 (632)
++||++ ++|+|+|++ |+|.+++.++.++ +++ ++.++...+|.+ .|....++++|+ +++.++.+| ...++++
T Consensus 59 ~l~~~~-~~~~v~~~~gs~T~~~~~~~~~l-~~~~~~~vi~~g~f~~---~~~~~~~~~~g~~~v~~~~~~~-g~~~d~~ 132 (378)
T PRK03080 59 ELLSLP-EGYEVGIVPGSDTGAWEMALWSL-LGARRVDHLAWESFGS---KWATDVVKQLKLEDPRVLEADY-GSLPDLS 132 (378)
T ss_pred HHhCCC-CCceEEEECCchHHHHHHHHHhc-CCCCcceEEEeCHHHH---HHHHHHHhhcCCCCceEeccCC-CCCCCHh
Confidence 999996 356899886 9999999999999 664 344555556654 454334577899 999998874 3456766
Q ss_pred HHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccc
Q 006746 258 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQI 336 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~ 336 (632)
++. . +++|+++|++|.||.++|++ |++ |++|++++|||+|++|. .++|+++ +||+++|+|||
T Consensus 133 ~i~----~-------~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~--~pidv~~--iD~~~~s~~K~ 195 (378)
T PRK03080 133 AVD----F-------DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFA--LPLDWSK--LDVYTFSWQKV 195 (378)
T ss_pred hcC----C-------CCCEEEEecCCccceeccchhhcc--ccCCCeEEEeccccccc--CCCCHHH--CcEEEEehhhh
Confidence 532 2 25799999999999999999 988 88999999999999998 6999986 79999999998
Q ss_pred cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccc-cchhhhhhhccccCCCccchhhhhh
Q 006746 337 FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ-TSKSKQEKVAATNTFSGPMSIEMRQ 415 (632)
Q Consensus 337 ~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~e~e~gt~~f~~~~~~~~~~ 415 (632)
++. |.|+|+||+++++++.++|...|+.. +. ++ ++.... ..... ++.+|
T Consensus 196 l~~-P~G~g~l~v~~~~~~~~~p~~~~~~~---~~---~~--------~~~~~~~~~~~~--~~~~t------------- 245 (378)
T PRK03080 196 LGG-EGGHGMAILSPRAVERLESYTPARPI---PK---FF--------RLTKGGKAIENS--FKGQT------------- 245 (378)
T ss_pred CCC-CCceEEEEECHHHHHhhhcccCCCCC---ch---hh--------eeccchHHhhhh--hcCCc-------------
Confidence 765 89999999999999888775443111 00 11 000000 00000 12233
Q ss_pred cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCc
Q 006746 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNAL 494 (632)
Q Consensus 416 ~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~ 494 (632)
.+|+++..++++. ++|+++.++ |++++.+|.+.|+++|++.|.++ +.
T Consensus 246 ~~tp~i~~i~~l~------------------------~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~--------~~ 293 (378)
T PRK03080 246 INTPSMLTVEDYL------------------------DQLDWANSIGGLDALIARTAANASVLYDWAEKT--------PW 293 (378)
T ss_pred ccCchHHHHHHHH------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 2345666677777 999999998 89999999999999999999988 45
Q ss_pred EEEECCCCCCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccc
Q 006746 495 VKIYGPKIRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 573 (632)
Q Consensus 495 v~Iygp~~~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 573 (632)
++++++.. ..|+ ++++|++.+.+ ..++...+.++++ +||.++.|.+|.
T Consensus 294 ~~~~~~~~-~~~s~~i~~~~~~~~~-~~~~~~~~~~l~~-~~i~v~~g~~~~---------------------------- 342 (378)
T PRK03080 294 ATPLVADP-ATRSNTSVTLDFVDAQ-AAVDAAAVAKLLR-ENGAVDIEPYRD---------------------------- 342 (378)
T ss_pred cccccCCc-cccCccEEEEEcCCch-HHHHHHHHHHHHH-cCCeeccccccC----------------------------
Confidence 77776532 3454 69999987621 0134556666664 589998774431
Q ss_pred cccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 574 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 574 ~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|+|+|||.+||++|+++|++.++
T Consensus 343 --------~~~~vRis~~~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 343 --------APNGLRIWCGPTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred --------CCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 125899999999999999999999998765
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=320.85 Aligned_cols=319 Identities=19% Similarity=0.159 Sum_probs=250.6
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccc-ccccchhHHHHHHHHHHHHHcCCCCCC
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL-LHGGQESGLESAMKKRIMDFLNISEND 189 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~-~~g~~~~~~~~~~R~~ia~~l~a~~~e 189 (632)
|||+++++++|+.+++++.+++... .+|+++.. .++....+.++++|+.+++++|++++
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~- 60 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEE-------------------FGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE- 60 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc-------------------CCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 8999999999999999987754311 13444321 12333457889999999999999876
Q ss_pred ccEEEeCCHHHHHHHHHhhCC---CCCC-CeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 190 YGMVFTANRTSAFKLLAESYP---FMSV-KNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 190 y~vvft~naT~al~lv~~sl~---~~~g-d~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
+|+||+|+|+|+++++.++. +.+| ++|++ ..+|++....| ..++..|++++.++++ +++.+++++|+++++
T Consensus 61 -~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~--~~~~~~G~~v~~v~~~-~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 61 -EVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPI--RALERNGFTVTYLPVD-ESGRIDVDELADAIR 136 (353)
T ss_pred -eEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHH--HHHHhcCCEEEEEccC-CCCcCCHHHHHHhCC
Confidence 69999999999999988872 2456 56654 56787643333 3346689999999987 567799999999886
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 343 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G 343 (632)
++ ++++++++++|.||..+|++ |+++|+++|++++||++|.+|. .++|++.+++|++++|+||++| |.|
T Consensus 137 ~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~g 206 (353)
T TIGR03235 137 PD------TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGK--ITVDLSADRIDLISCSGHKIYG--PKG 206 (353)
T ss_pred CC------CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCC--ccccccccCCCEEEeehhhcCC--CCc
Confidence 54 48999999999999999999 9999999999999999999998 6899999999999999999988 899
Q ss_pred eEEEEEeCCCccc--cCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCccc
Q 006746 344 FGCLFVKKSTVPI--LVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 421 (632)
Q Consensus 344 ~G~L~Vr~~~~~~--L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~ 421 (632)
+|+||++++.+.. ++|.+++|.. + ..+ +.||+++
T Consensus 207 ~g~l~~~~~~~~~~~~~~~~~~~~~---------~----------------~~~-------------------~~gt~~~ 242 (353)
T TIGR03235 207 IGALVIRKRGKPKAPLKPIMFGGGQ---------E----------------RGL-------------------RPGTLPV 242 (353)
T ss_pred eEEEEEccCcccccccCceeeCCCC---------c----------------Ccc-------------------ccCCCCh
Confidence 9999999986432 3433332110 0 001 2566777
Q ss_pred chhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCC
Q 006746 422 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 501 (632)
Q Consensus 422 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~ 501 (632)
+.+.++. ++|+++. .|++++.+|++.|.++|++.|.++ .++++++.
T Consensus 243 ~~~~al~------------------------~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~---------g~~~~~~~ 288 (353)
T TIGR03235 243 HLIVGMG------------------------EAAEIAR-RNAQAWEVKLRAMRNQLRDALQTL---------GVKLNGDP 288 (353)
T ss_pred HHHHHHH------------------------HHHHHHH-hhHHHHHHHHHHHHHHHHHHhccC---------CeEEeCCc
Confidence 7888887 8999876 489999999999999999999764 37888865
Q ss_pred CCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 502 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 502 ~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
. ..+.++++|++.+ ++.+.|.+.+.+ +|.+++|..|..+.
T Consensus 289 ~-~~~~~i~~~~~~~-----~~~~~v~~~L~~-~i~v~~g~~~~~~~ 328 (353)
T TIGR03235 289 A-ETIPHILNFSIDG-----VNSEALIVNLRA-DAAVSTGSACSSSK 328 (353)
T ss_pred c-cccCCEEEEEeCC-----cCHHHHHHHHhC-CeEEEchhhcCCCC
Confidence 3 3457899999876 677778777754 89999999997653
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=320.73 Aligned_cols=337 Identities=14% Similarity=0.169 Sum_probs=235.8
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccc----cccchhHHHHHHHHHHHHHcCCCCCC
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL----HGGQESGLESAMKKRIMDFLNISEND 189 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~----~g~~~~~~~~~~R~~ia~~l~a~~~e 189 (632)
++|-.+.|+.|++++.+++... +|++.... ......++++++|++++++||++ ++
T Consensus 4 ~pGp~~~p~~V~~a~~~~~~~~--------------------~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~-~~ 62 (355)
T cd00611 4 SAGPAALPEEVLEQAQKELLDF--------------------NGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIP-DN 62 (355)
T ss_pred CCCCCCCCHHHHHHHHHHHhhc--------------------ccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CC
Confidence 3677899999999988765321 11111100 01223588999999999999984 45
Q ss_pred ccEEEeCC-HHHHHHHHHhhC--CCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCcccc-C-HHHHHHHH
Q 006746 190 YGMVFTAN-RTSAFKLLAESY--PFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRI-N-SEKLRKMV 263 (632)
Q Consensus 190 y~vvft~n-aT~al~lv~~sl--~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i-~-~~~l~~~i 263 (632)
++|+||+| +|+|+++++.++ +++++++|++ .+++. | .+.++++|++++.++.+ +++.. + .+..+..+
T Consensus 63 ~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g~~~~~-----~-~~~a~~~g~~~~~~~~~-~~g~~~~~~~~~~~~~ 135 (355)
T cd00611 63 YKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAK-----A-AKEAKRYGGVVVIVAAK-EEGKYTKIPDVETWDL 135 (355)
T ss_pred ceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH-----H-HHHHHhcCCCcEEEecc-cccCCCCCCCHhhcCC
Confidence 68999988 999999999999 2235555543 23332 2 45778999999999875 22212 3 22222223
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 343 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G 343 (632)
++ ++++|+++|++|.||.+++ ++++.+|++++|||+|++|+ .++|++++++ +++|+||+|| |.|
T Consensus 136 ~~------~~~lV~~~h~~t~tG~~~~----~i~~~~g~~~~VDa~qs~g~--~~idv~~~~~--~~ss~~K~lG--P~G 199 (355)
T cd00611 136 AP------DAAYVHYCSNETIHGVEFD----EVPDTGGVPLVADMSSNILS--RPIDVSKFGV--IYAGAQKNLG--PAG 199 (355)
T ss_pred CC------CCCEEEEeCCcccccEEcc----eecccCCCeEEEEccccccC--CCCCHHHhCE--EEeecccccC--CCc
Confidence 32 4689999999999999854 34455899999999999998 6999988764 5577999999 889
Q ss_pred eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 344 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 344 ~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
+|+||+|+++++++.+.... .. .++ ... ..+ + ..||||++.
T Consensus 200 ~g~l~~~~~~~~~~~~~~~~-~~-------~~~-----------------~~~--~~~--~----------~~~Tpn~~~ 240 (355)
T cd00611 200 VTVVIVRKDLLGKARKITPS-ML-------NYK-----------------THA--DNN--S----------LYNTPPTFA 240 (355)
T ss_pred eEEEEECHHHHhhcccCCCC-cc-------cHH-----------------HHH--hcC--C----------CCCCChHHH
Confidence 99999999998877653211 00 000 000 000 0 157899999
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEE-CCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY-GPK 501 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iy-gp~ 501 (632)
|++|. ++|+++.++ |+++|.+|.+.|+++|++.|.++ |. +| ++.
T Consensus 241 i~~L~------------------------aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~--------~g--l~~~~~ 286 (355)
T cd00611 241 IYMMG------------------------LVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS--------NG--FYRGPV 286 (355)
T ss_pred HHHHH------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC--------cc--ccccCC
Confidence 99998 999999999 79999999999999999999998 44 35 333
Q ss_pred CCCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCC
Q 006746 502 IRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580 (632)
Q Consensus 502 ~~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 580 (632)
++..|. .+++|++.+. .+. ....+.+.+.||++..|.
T Consensus 287 ~~~~rs~~vvsf~~~~~---~l~-~~~~~~~~r~G~~~~~~~-------------------------------------- 324 (355)
T cd00611 287 DKRARSRMNVPFRLGKE---ELE-KEFLKEAEAAGMIGLKGH-------------------------------------- 324 (355)
T ss_pred CHHHcCceEEEEEcCCh---hhh-HHHHHHHHHCCCcccCCC--------------------------------------
Confidence 223466 5699998872 011 122122333455432220
Q ss_pred CCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 581 LGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 581 ~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
...|.||+|+++|||.|||++|+++|+++
T Consensus 325 ~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 325 RSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred cccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 11369999999999999999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=309.50 Aligned_cols=360 Identities=14% Similarity=0.064 Sum_probs=277.7
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
+...||...|-...++.+++++...+..+ . +....++++++|+.+++++|++
T Consensus 7 ~~~~~l~~pGP~~~~~~V~~a~~~~~~~~----------------------~------~~~~~~~~~~~~~~l~~~~g~~ 58 (401)
T PLN02409 7 PGRNHLFVPGPVNIPERVLRAMNRPNEDH----------------------R------SPAFPALTKELLEDVKYIFKTK 58 (401)
T ss_pred CCCceeccCCCCCCCHHHHHHhcCCCCCC----------------------C------CHHHHHHHHHHHHHHHHHhCCC
Confidence 45778999999999999999976532100 0 1113578999999999999997
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
+ ++.++|++++|+++..++.++ +++||+|++ ..+|++ ..| .+.+++.|++++.++.++.. .++.++|++++++
T Consensus 59 ~-~~~vi~~~~gt~a~~~a~~~~-~~~Gd~Vlv~~~~~~~--~~~-~~~~~~~g~~v~~v~~~~~~-~~~~~~l~~~l~~ 132 (401)
T PLN02409 59 S-GTPFIFPTTGTGAWESALTNT-LSPGDKVVSFRIGQFS--LLW-IDQMQRLNFDVDVVESPWGQ-GADLDILKSKLRQ 132 (401)
T ss_pred C-CCEEEEeCCcHHHHHHHHHhc-CCCCCEEEEeCCCchh--HHH-HHHHHHcCCceEEEECCCCC-CCCHHHHHHHHhh
Confidence 5 347999999999999999887 899999764 557875 345 46778899999999998543 4899999999986
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHH--HhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRI--AQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~--a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
.+ .+++++++++|++|.||.++|++ |.++ ||++|++++||++|++|. .++|+.++++||+++|+||+++. |.
T Consensus 133 ~~--~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~--~~id~~~~~~D~~~~s~~K~l~~-P~ 207 (401)
T PLN02409 133 DT--NHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGA--LDFRMDEWGVDVALTGSQKALSL-PT 207 (401)
T ss_pred Cc--CCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCC--ccccccccCccEEEEcCccccCc-CC
Confidence 31 12469999999999999999999 9999 999999999999999987 68999999999999999997765 88
Q ss_pred ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccc
Q 006746 343 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 422 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~ 422 (632)
|+|+|++++++++.+.+...... . ..|... ..+. +.|+ +..+|++++
T Consensus 208 G~G~l~~~~~~~~~~~~~~~~~~---~----~~~~~~-------------~~~~--~~g~-----------~~~~Tp~~~ 254 (401)
T PLN02409 208 GLGIVCASPKALEASKTAKSPRV---F----FDWADY-------------LKFY--KLGT-----------YWPYTPSIQ 254 (401)
T ss_pred CcceeEECHHHHHHHhcCCCCCe---e----cCHHHH-------------HHHH--hcCC-----------CCCCCccHH
Confidence 99999999998877655311100 0 001000 0010 1121 014568888
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC
Q 006746 423 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 502 (632)
Q Consensus 423 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~ 502 (632)
.++++. .+|+++.++|++++.+|.+.|.++|++.|.++ | ++++++..
T Consensus 255 ~~~al~------------------------~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~------g---~~~~~~~~ 301 (401)
T PLN02409 255 LLYGLR------------------------AALDLIFEEGLENVIARHARLGEATRLAVEAW------G---LKLCTKKP 301 (401)
T ss_pred HHHHHH------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CeeccCCh
Confidence 899998 99999999999999999999999999999887 4 67788642
Q ss_pred CCCCC-cEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCC
Q 006746 503 RFDRG-PALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580 (632)
Q Consensus 503 ~~~rg-~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 580 (632)
..|. .+++|++++ | ++...+ +++++++||.++.|. +.
T Consensus 302 -~~~s~~v~~~~~p~--~--~~~~~l~~~l~~~~~i~i~~G~------------------------------------~~ 340 (401)
T PLN02409 302 -EWRSDTVTAVVVPE--G--IDSAEIVKNAWKKYNLSLGLGL------------------------------------NK 340 (401)
T ss_pred -hhcccceEEEeCCC--C--CCHHHHHHHHHHhCCEEEEcCC------------------------------------Cc
Confidence 3455 456677653 1 566555 467788999998772 11
Q ss_pred CCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 581 LGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 581 ~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||||...|+|.+||.+++++|.+.|.+
T Consensus 341 ~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~ 372 (401)
T PLN02409 341 VAGKVFRIGHLGNVNELQLLGALAGVEMVLKD 372 (401)
T ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 13468999999999999999999999997765
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=298.35 Aligned_cols=304 Identities=14% Similarity=0.145 Sum_probs=228.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCC-HHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTAN-RTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~n-aT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.++++++|+.++++|+++ ++|+|+|++| +|.|++.++.++ +.+|++++ .....++ ..| .+.+++.|+ +..+.
T Consensus 36 ~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl-~~~~~~~l~i~~G~fg--~r~-~~~a~~~g~-~~~~~ 109 (349)
T TIGR01364 36 EAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNL-LAEGKVADYIVTGAWS--KKA-AKEAKKYGV-VNVVA 109 (349)
T ss_pred HHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhc-CCCCCeEEEEECCHHH--HHH-HHHHHHhCC-cEEEe
Confidence 489999999999999984 4578888876 999999999999 55788854 4455543 233 788999999 77777
Q ss_pred cc----CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCC
Q 006746 247 FS----WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLS 322 (632)
Q Consensus 247 ~~----~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls 322 (632)
.+ |.+ .+++++++ ++ +++++|+++|+++.||+.+| ++++.++++++|||+|++|+ .++|++
T Consensus 110 ~~~~~~~~~-~~~~~~~~--~~------~~~~~v~~th~ETstGv~~~----~l~~~~~~l~iVDavss~g~--~~id~~ 174 (349)
T TIGR01364 110 SGKEGNYTK-IPDPSTWE--IS------EDAAYVHYCANETIHGVEFR----ELPDVKNAPLVADMSSNILS--RPIDVS 174 (349)
T ss_pred ccccCCCCC-CCCHHhcC--CC------CCCCEEEEcCCCCcccEecc----eecccCCCeEEEEccccccC--ccCCHH
Confidence 53 211 34555544 11 24789999999999999988 56677899999999999998 699998
Q ss_pred CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccc
Q 006746 323 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 402 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt 402 (632)
++ ||+++|+||++| |+|+|++++++++++++++... .. .+++ ... ..++
T Consensus 175 ~~--d~~~~ssqK~lg--P~Glg~l~~s~~~~~~~~~~~~-~~-------~~~~-----------------~~~--~~~~ 223 (349)
T TIGR01364 175 KF--GLIYAGAQKNIG--PAGLTVVIVRKDLLGRASRITP-SM-------LNYK-----------------IHA--ENDS 223 (349)
T ss_pred Hc--cEEEEecccccC--CCceEEEEECHHHHhhcccCCC-Cc-------chHH-----------------HHH--hcCC
Confidence 75 599999999999 8899999999999987766311 00 0010 000 0111
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L 481 (632)
..||||++.|++|. ++|+++.++ |+++|.+|.+.|+++|++.|
T Consensus 224 ------------~~~Tp~~~~i~al~------------------------~al~~l~~~gG~e~i~~r~~~l~~~l~~~l 267 (349)
T TIGR01364 224 ------------MYNTPPTFAIYVSG------------------------LVFKWLKEQGGVKAIEKRNQAKAQLLYDTI 267 (349)
T ss_pred ------------CCCCCcHHHHHHHH------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 14789999999998 999999999 79999999999999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
.++ +.+.++.. .+..|+ .+++|++.+. .+. ..+.+.+.+.||++..|..
T Consensus 268 ~~~--------~gl~~~~~-~~~~rs~~v~sf~~~~~---~~~-~~~~~~~~~~Gi~~~~~~~----------------- 317 (349)
T TIGR01364 268 DNS--------NGFYRNPV-DPRNRSRMNVVFTLGNE---ELE-KRFLKEAEERGLVSLKGHR----------------- 317 (349)
T ss_pred HhC--------CCeeccCC-CHHHcCCeEEEEecCCh---hHh-HHHHHHHHHCCCcccCCcc-----------------
Confidence 998 44433332 122355 6799998863 122 3333355567776554310
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|+++|||.|||++|+++|++++.
T Consensus 318 ---------------------~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 318 ---------------------SVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred ---------------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 136999999999999999999999998764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=296.24 Aligned_cols=346 Identities=13% Similarity=0.105 Sum_probs=245.6
Q ss_pred eEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccc-ccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNL-KTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 110 vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~-~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
.+|=+.|-...|+.|++++...+.... + . +.+.+ -++ ....-.++++++|++++++||++ +
T Consensus 4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~-~--------~------~~g~~~~~h--r~~~f~~~~~~~~~~l~~l~~~~-~ 65 (360)
T PRK05355 4 VYNFSAGPAMLPEEVLEQAQQELLDWN-G--------S------GMSVMEISH--RSKEFEAVAEEAEADLRELLNIP-D 65 (360)
T ss_pred eeeccCCCCCCCHHHHHHHHHHhhccc-c--------C------CccccccCC--CCHHHHHHHHHHHHHHHHHhCCC-C
Confidence 345568899999999999876542110 0 0 00110 001 11122489999999999999984 3
Q ss_pred CccEEEe-CCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH-HHHh
Q 006746 189 DYGMVFT-ANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK-MVVS 265 (632)
Q Consensus 189 ey~vvft-~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~-~i~~ 265 (632)
+|+|+|+ +++|.|+..+..++ +.+|++++ ......+ ..| .+.+++.|.. ..+..++..+..+..++++ +|++
T Consensus 66 ~~~v~~~~gsgt~~~Ea~~~nl-~~~g~~~l~i~~G~fg--~r~-~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~ 140 (360)
T PRK05355 66 NYKVLFLQGGASLQFAMVPMNL-LGGGKKADYVDTGSWS--KKA-IKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSD 140 (360)
T ss_pred CcEEEEEcCCchHHHHHHHHhc-CCCCCeEEEEECCHHH--HHH-HHHHHHhCCc-eEEecccccCCCCCCChhhccCCC
Confidence 4566666 67889999999998 67888854 4444433 223 6788999975 6666653344555445554 5543
Q ss_pred cCcCCCceeEEEEeccCCCCcccc-chH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARY-PYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 343 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~-pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G 343 (632)
++++|+++|+++.||+.+ |+. + +|++++|||+|++|+ .++|++++ ||+++|+||++| |+|
T Consensus 141 ------~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~--~~idv~~~--d~~~~ssqK~lg--P~G 202 (360)
T PRK05355 141 ------DAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILS--RPIDVSKF--GLIYAGAQKNIG--PAG 202 (360)
T ss_pred ------CCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccC--ccCCHHHc--cEEEEecccccc--CCc
Confidence 358999999999999999 777 5 799999999999998 69999876 699999999999 889
Q ss_pred eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 344 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 344 ~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
+|+||+|+++++++.+.. ++..+ | . ... .... ..||||++.
T Consensus 203 lg~l~~s~~~l~~~~~~~-~~~~~--------~--~--------------~~~--~~~~------------~~~Tp~~~~ 243 (360)
T PRK05355 203 LTIVIVREDLLGRALPSI-PSMLD--------Y--K--------------THA--DNDS------------MYNTPPTFA 243 (360)
T ss_pred eEEEEECHHHHhhcccCC-ChHHH--------H--H--------------HHH--hcCC------------ccCCCcHHH
Confidence 999999999998876631 21111 0 0 000 0000 157899999
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 502 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~ 502 (632)
+++|. ++|+++.++ |+++|.+|.+.|++++++.|+++ +++..+.+.
T Consensus 244 i~aL~------------------------~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~--------~~~~~~~~~- 290 (360)
T PRK05355 244 IYLAG------------------------LVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS--------DFYRNPVAP- 290 (360)
T ss_pred HHHHH------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC--------CCcccCCCh-
Confidence 99998 999999999 89999999999999999999998 333333221
Q ss_pred CCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCC
Q 006746 503 RFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 581 (632)
Q Consensus 503 ~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 581 (632)
..|+ .+++|++++. +....+.+.+.+.||.+..|. .
T Consensus 291 -~~rs~~v~sf~~~~~----~~~~~~~~~~~~~Gi~~~~~~--------------------------------------~ 327 (360)
T PRK05355 291 -EDRSRMNVPFTLADE----ELDKKFLAEAKAAGLVGLKGH--------------------------------------R 327 (360)
T ss_pred -hhcCCcEEEEEcCCh----HHHHHHHHHHHHCCCcccCCC--------------------------------------C
Confidence 2355 6799998772 222333333444566543321 0
Q ss_pred CCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 582 GITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 582 ~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..|.||+|+++|||.|||++|+++|++++.
T Consensus 328 ~~g~vRiS~~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 328 SVGGMRASIYNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred ccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 136899999999999999999999999764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=284.31 Aligned_cols=324 Identities=12% Similarity=0.096 Sum_probs=240.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCe-EEEeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKN-LLTVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~-ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.++++|+.+++++|+++++..|+||+|+|+|++.++.++ +.+|++ |++...++. . .+...+++.|++++.++.
T Consensus 34 ~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l-~~~~~~vlv~~~~~~~-~--~~~~~a~~~g~~~~~v~~ 109 (363)
T TIGR02326 34 NIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA-VPKDGKLLVVINGAYG-A--RIVQIAEYLGIPHHVVDT 109 (363)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc-CCCCCeEEEEeCChhh-H--HHHHHHHHcCCceEEEeC
Confidence 57889999999999999764447999999999999999999 456666 444444432 1 124567889999999998
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+ +++.++++++++++.+++ ++++++++|++|.||.++|++ |+++||++|++++||++|++|. .++|+..+++
T Consensus 110 ~-~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~--~~~~~~~~~~ 182 (363)
T TIGR02326 110 G-EVEPPDVVEVEAILAADP----AITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGG--IPIDIAELHI 182 (363)
T ss_pred C-CCCCCCHHHHHHHHhhCC----CccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccC--cccchhhcCc
Confidence 7 566789999999987532 457899999999999999999 9999999999999999999987 5899999999
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCC
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 406 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~ 406 (632)
||+++|+||+++. |.|+|+|+++++.++.+.+...+ . .. .....|. ..+...+..
T Consensus 183 D~~~~s~~K~l~~-p~G~G~l~~~~~~~~~~~~~~~~-~-~~--~~~~~~~-----------------~~~~~~~~~--- 237 (363)
T TIGR02326 183 DYLISSANKCIQG-VPGFGFVIARQAELAACKGNARS-L-SL--DLYDQWR-----------------CMEDNHGKW--- 237 (363)
T ss_pred cEEEecCcccccc-CCcceEEEECHHHHHHhhcCCCc-e-ee--cHHHHHH-----------------HHhccCCCC---
Confidence 9999999996643 88999999999887665432211 0 00 0000110 000001111
Q ss_pred ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccC
Q 006746 407 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQ 485 (632)
Q Consensus 407 ~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~ 485 (632)
..|++++.+.++. ++|+.+... |++++.+|.+.+.+++++.|.++
T Consensus 238 ---------~ft~~~~~~~al~------------------------~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~- 283 (363)
T TIGR02326 238 ---------RFTSPTHVVHAFA------------------------QALLELEKEGGVAARHQRYQQNQKTLVAGMRAL- 283 (363)
T ss_pred ---------CCCCcHHHHHHHH------------------------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 1234566777776 889887655 69999999999999999999887
Q ss_pred CCCCCCCCcEEEECCCCCCCCCcE-EEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhh
Q 006746 486 HPNTEGNALVKIYGPKIRFDRGPA-LAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 564 (632)
Q Consensus 486 h~~~~G~p~v~Iygp~~~~~rg~i-vaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~ 564 (632)
| ++++.+. ..++++ ++|.+.+. ..++...+.+.+.++||.++.|..
T Consensus 284 -----g---~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~v~~~L~~~gi~v~~g~~--------------------- 330 (363)
T TIGR02326 284 -----G---FEPLLDD--EIQSPIITSFYSPED--PDYRFADFYQRLKEQGFVIYPGKV--------------------- 330 (363)
T ss_pred -----C---CeeccCc--ccCCceEEEEECCCC--CCCCHHHHHHHHHHCCEEEECCcC---------------------
Confidence 4 3455553 235555 46666541 114556676666778999986621
Q ss_pred ccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 565 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.....||+|++.+++.|||+++++.|++.|+
T Consensus 331 ----------------~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 331 ----------------SQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred ----------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 1125899998888999999999999998764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=278.24 Aligned_cols=348 Identities=14% Similarity=0.099 Sum_probs=256.8
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCccEE
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMV 193 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vv 193 (632)
++|-.+.|..+++++.+.+.. + .+....++++++|+.+++++|+++ ++.++
T Consensus 4 ~~~~~~~~~~v~~a~~~~~~~----------------------~------~~~~~~~~~~~~~~~la~~~g~~~-~~~~~ 54 (356)
T cd06451 4 IPGPSNVPPRVLKAMNRPMLG----------------------H------RSPEFLALMDEILEGLRYVFQTEN-GLTFL 54 (356)
T ss_pred cCCCcCCCHHHHHHhCCCccC----------------------C------CCHHHHHHHHHHHHHHHHHhcCCC-CCEEE
Confidence 467778889999997543210 0 011134678899999999999954 34688
Q ss_pred EeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCc
Q 006746 194 FTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ 272 (632)
Q Consensus 194 ft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~ 272 (632)
+|+|+|+|+++++.++ ..+|++|++. ..|+++ .+ ...++..|++++.++.+ +++.++.+++++.+++. +
T Consensus 55 ~~~~~t~al~~~~~~~-~~~g~~vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~i~~~-----~ 124 (356)
T cd06451 55 LSGSGTGAMEAALSNL-LEPGDKVLVGVNGVFGD--RW-ADMAERYGADVDVVEKP-WGEAVSPEEIAEALEQH-----D 124 (356)
T ss_pred EecCcHHHHHHHHHHh-CCCCCEEEEecCCchhH--HH-HHHHHHhCCCeEEeecC-CCCCCCHHHHHHHHhcc-----C
Confidence 9999999999999999 5789998755 455542 23 35667889999999987 45678999999999751 2
Q ss_pred eeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeC
Q 006746 273 RGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 273 ~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
++++.+++++|.||.+.|++ |.++|+++|+++++|++|.+|. .++++..+++|++++|+||+||. |.|+|+|++++
T Consensus 125 ~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~--~~~~~~~~~~d~~~~s~~K~l~~-p~g~G~l~~~~ 201 (356)
T cd06451 125 IKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGG--EPFRMDEWGVDVAYTGSQKALGA-PPGLGPIAFSE 201 (356)
T ss_pred CCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccC--ccccccccCccEEEecCchhccC-CCCcceeEECH
Confidence 48999999999999999999 9999999999999999998886 47888888999999999998886 88999999999
Q ss_pred CCccccCC--CCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhh
Q 006746 352 STVPILVD--NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRR 429 (632)
Q Consensus 352 ~~~~~L~~--~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~ 429 (632)
+.++.+.. ...+ .+|... ...+ ..+. .+ ...|+++++.+.++.
T Consensus 202 ~~~~~~~~~~~~~~----------~~~~~~--------------~~~~-~~~~-~~--------~~~~t~~~~~~~a~~- 246 (356)
T cd06451 202 RALERIKKKTKPKG----------FYFDLL--------------LLLK-YWGE-GY--------SYPHTPPVNLLYALR- 246 (356)
T ss_pred HHHHHHHhcCCCCc----------eeecHH--------------HHHh-hhcc-cC--------CCCCCChHHHHHHHH-
Confidence 88766653 1111 011000 0000 0000 00 023556666677776
Q ss_pred hhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcE
Q 006746 430 AEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA 509 (632)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~i 509 (632)
++++++.+.|++.+.++.+.+++++++.|.++ | ++++++. ..++++
T Consensus 247 -----------------------aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~--~~~~~~ 292 (356)
T cd06451 247 -----------------------EALDLILEEGLENRWARHRRLAKALREGLEAL------G---LKLLAKP--ELRSPT 292 (356)
T ss_pred -----------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CeeccCc--ccCCCc
Confidence 89999988899999999999999999999987 4 4666653 235666
Q ss_pred EEEEEccCCCCccCHHHHHHHHHhC-CcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEE
Q 006746 510 LAFNVFDWKREKIEPVLVQKLADRE-NISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA 588 (632)
Q Consensus 510 vaFnv~~~~G~~i~~~~V~kla~~~-gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRv 588 (632)
+.+...+ .+ ++...+.+.+.++ ||.++.|..| ...++||+
T Consensus 293 ~~~~~~~-~~--~~~~~~~~~L~~~~gI~~~~g~~~------------------------------------~~~~~iRi 333 (356)
T cd06451 293 VTAVLVP-EG--VDGDEVVRRLMKRYNIEIAGGLGP------------------------------------TAGKVFRI 333 (356)
T ss_pred eEEEECC-CC--CCHHHHHHHHHHhCCEEEeccccc------------------------------------ccCCEEEE
Confidence 6543332 12 4566666655555 9999876421 12359999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhh
Q 006746 589 SLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 589 Slg~~~t~eDV~rlv~~l~~~l~ 611 (632)
|++.++|.|||+++++.|++.++
T Consensus 334 s~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 334 GHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred ecCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-31 Score=285.06 Aligned_cols=312 Identities=13% Similarity=0.096 Sum_probs=225.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEe-CCHHHHHHHHHhhCCCCCCCeE-EEeccccchhhHHHHHHHHhc--CCEEE
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFT-ANRTSAFKLLAESYPFMSVKNL-LTVYDYESEAVEAMIRTSEKR--GARVM 243 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft-~naT~al~lv~~sl~~~~gd~i-lt~~d~~s~~v~~~~~~a~~~--G~~v~ 243 (632)
..++++++|++++++||+++ +|+|+|+ +|+|.+++.++.++. .+ +.+ ++.-+|-+ .+.+.++.. +.++.
T Consensus 39 f~~~~~~~r~~l~~l~~~~~-~~~v~f~~gs~T~a~~~~~~~l~-~~-~~l~i~~G~~~~----~~~~~a~~~~~~~~~~ 111 (361)
T TIGR01366 39 VKNLVGRVREGLAELFSLPD-GYEVILGNGGATAFWDAATFGLI-EK-KSLHLSFGEFSS----KFAKAVKLAPWLGEPI 111 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCC-CceEEEECCchhHHHHHHHHhcc-cc-cccEEecCHHHH----HHHHHHHhhhccCCce
Confidence 46899999999999999964 5689996 669999999999984 22 333 33334432 223444431 23778
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS 322 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls 322 (632)
.++.+|. ..++. .+. +++++|+++|++|.||+.+|++ | +|++|++++|||+|++|+ .++|++
T Consensus 112 ~~~~~~~-~~~~~-----~~~------~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~--~~idv~ 174 (361)
T TIGR01366 112 IVTADPG-SAPEP-----QAD------PGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGG--LPVDIA 174 (361)
T ss_pred EEecCCC-CCCCC-----ccC------CCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccC--CCCCHH
Confidence 8887643 23332 122 3569999999999999999998 7 488999999999999998 699988
Q ss_pred CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhh-hhcc
Q 006746 323 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE-KVAA 401 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e-~e~g 401 (632)
+ +||+++|+||++|. |.|++++++++++++++++...+|... |. ++.... .+.+ ++.+
T Consensus 175 ~--~D~~~~s~~K~lg~-~~Gl~~~~~s~~~~~~~~~~~~~~~~~--p~---~~d~~~-------------~~~~~~~~~ 233 (361)
T TIGR01366 175 E--TDVYYFAPQKNFAS-DGGLWLAIMSPAALERIEAIAASGRWV--PE---FLSLPT-------------AVDNSLKNQ 233 (361)
T ss_pred H--CCEEEEEchhhcCC-CCceEEEEECHHHHhhhhcccCCCCCC--ch---hhhHHH-------------HHhccccCC
Confidence 5 89999999999995 779999999999998888765553210 10 110000 0000 1123
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~ 480 (632)
| .+|+++..+++|. ++|+++.++ |++++.+|++.|++++++.
T Consensus 234 t-------------~~tp~i~~i~~l~------------------------~al~~l~~~gg~e~~~~r~~~l~~~l~~~ 276 (361)
T TIGR01366 234 T-------------YNTPAIATLALLA------------------------EQIDWMNGNGGLDWAVARTADSSSRLYSW 276 (361)
T ss_pred C-------------CCCchHHHHHHHH------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 2 3566777778887 999999999 6999999999999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCC--CCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKI--RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 558 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~--~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~ 558 (632)
|.++ +.+++|.+.. ...+.++|+|+ .+ ++++.+.+.++++||.+..|.
T Consensus 277 l~~~--------~~~~~~~~~~~~~s~~v~~v~~~-~g-----~~~~~v~~~L~~~gI~i~~~~---------------- 326 (361)
T TIGR01366 277 AQER--------PYATPFVTDPGKRSQVVGTIDFV-DD-----IDAATVAKILRANGIVDTEPY---------------- 326 (361)
T ss_pred HHhC--------CCcccCCCChhhcccceEEEECC-Cc-----cCHHHHHHHHHHCCCeeccCc----------------
Confidence 9998 4466665421 11223555552 33 688888776677899985431
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+.++||||++.|||.+||++|+++|++.++
T Consensus 327 --------------------~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 327 --------------------RKLGRNQLRVAMFPAIDPDDVEALTECVDWVVE 359 (361)
T ss_pred --------------------cccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 001235899999999999999999999998764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=285.20 Aligned_cols=349 Identities=14% Similarity=0.087 Sum_probs=255.2
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHH-HHHHHHHHHcCCCCCCccE
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES-AMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~-~~R~~ia~~l~a~~~ey~v 192 (632)
+++-..+|+.+++.+...+... |-.+||++.+..|....+.++ .+|++++++||++++ ++
T Consensus 40 ~~sen~~s~~v~~~~~~~l~~~-----------------y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~--~~ 100 (452)
T PTZ00094 40 IASENFTSRAVLECLGSCFTNK-----------------YAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPE--EW 100 (452)
T ss_pred ecccccCCHHHHHHhcchhhcc-----------------ccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcc--cc
Confidence 4777899999999987655321 123788888766766667777 499999999999876 47
Q ss_pred EEe---CCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHH------hcCCEEEEEeccCCccccCHHHHHHH
Q 006746 193 VFT---ANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSE------KRGARVMSAEFSWPRLRINSEKLRKM 262 (632)
Q Consensus 193 vft---~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~------~~G~~v~~v~~~~~~~~i~~~~l~~~ 262 (632)
+|+ +++|+|..+++.++ +++||+|++ ..+|.+....|. ...+ ..+.++..++++ +++.+|.++|+++
T Consensus 101 ~~~~~~~sgt~an~~v~~al-~~~gd~Ii~~~~ehg~~l~~~~-~l~~~~~~~~~~~~~~~~~~~~-~~g~id~~~L~~~ 177 (452)
T PTZ00094 101 GVNVQPYSGSPANFAVYTAL-LQPHDRIMGLDLPSGGHLTHGF-YTAKKKVSATSIYFESLPYQVN-EKGLIDYDKLEEL 177 (452)
T ss_pred eeecCCCchHHHHHHHHHHh-cCCCCEEEecccccCCcccccc-cccccccccceeeeeeeecccC-CCCCcCHHHHHHH
Confidence 677 78999999999999 889999775 557765333331 1111 112344455565 4588999999999
Q ss_pred HHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEEEccccccC
Q 006746 263 VVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLICSFYQIFG 338 (632)
Q Consensus 263 i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls---~~~~Df~~~S~hK~~G 338 (632)
+.+.+ ++++++. .+ .+|...|++ |.++||++|++++||++|++|. .+.|+. ..++||+++|+|||++
T Consensus 178 l~~~~-----~~lvi~~-~s-~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~--i~~~~~~~~~~~~D~l~~S~hK~l~ 248 (452)
T PTZ00094 178 AKAFR-----PKLIIAG-AS-AYPRDIDYKRFREICDSVGAYLMADIAHTSGL--VAAGVLPSPFPYADVVTTTTHKSLR 248 (452)
T ss_pred HHHhC-----CCEEEEe-CC-CCCCccCHHHHHHHHHHcCCEEEEeccchhcc--ccCCCCCCCCCCCcEEEcCCccCCC
Confidence 96422 3666654 34 699999999 9999999999999999999987 444432 2368999999999664
Q ss_pred CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCC
Q 006746 339 ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 418 (632)
Q Consensus 339 ~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt 418 (632)
. |.| |+++++++..+.+.+.... . .+ +.| .|+
T Consensus 249 G-P~G-g~l~~~~~~~~~l~~~~~~----------------~-------------~~-------p~~----------~G~ 280 (452)
T PTZ00094 249 G-PRS-GLIFYRKKVKPDIENKINE----------------A-------------VF-------PGL----------QGG 280 (452)
T ss_pred C-CCc-eEEEEecccchHHHHhhcc----------------c-------------cC-------CCC----------CCC
Confidence 3 998 8899988765433221100 0 00 000 245
Q ss_pred cccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEE
Q 006746 419 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 498 (632)
Q Consensus 419 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iy 498 (632)
++...++++. .+|+++...+.+.+.+|+..|+++|.+.|.+. | ++|+
T Consensus 281 ~~~~~iaal~------------------------~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~------g---~~v~ 327 (452)
T PTZ00094 281 PHNHQIAAIA------------------------VQLKEVQSPEWKEYAKQVLKNAKALAAALEKR------G---YDLV 327 (452)
T ss_pred chHHHHHHHH------------------------HHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC------C---cEEe
Confidence 5666788887 99999988889999999999999999999875 4 4566
Q ss_pred CCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEE-ccCccCChHHHhHHHHhhhhhhhhhhccccccccccccc
Q 006746 499 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL-SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD 577 (632)
Q Consensus 499 gp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~l-r~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 577 (632)
++.. ..+..+|.|+..+ ++...+.++++++||.+ +.|..|.+.
T Consensus 328 ~~~~-~~~~~~v~~~~~~-----~~~~~~~~~L~~~gI~vs~~~~p~~~~------------------------------ 371 (452)
T PTZ00094 328 TGGT-DNHLVLVDLRPFG-----ITGSKMEKLLDAVNISVNKNTIPGDKS------------------------------ 371 (452)
T ss_pred cCCC-CCceEeecCCcCC-----CCHHHHHHHHHHCCcEEecccCCCCCc------------------------------
Confidence 6532 2355666776665 67888888888899999 566555421
Q ss_pred cCCCCCcEEEEccCCCCC----HHHHHHHHHHHHHhhhh
Q 006746 578 KANLGITVVTASLGYLAN----FEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 578 ~~~~~~~~VRvSlg~~~t----~eDV~rlv~~l~~~l~~ 612 (632)
....++||+|+++||| .+||++++++|++.+..
T Consensus 372 --~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 372 --ALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred --CCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1234799999999998 99999999999999885
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=267.43 Aligned_cols=323 Identities=13% Similarity=0.077 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+.++++|+.+++++|++++...|++|+|+|+|+..++.++ +.+|++++ ....++. .. +...+++.|++++.++.+
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l-~~~~~~vlv~~~~~~~--~~-~~~~~~~~g~~~~~i~~~ 112 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL-VPRDGKVLVPDNGAYG--AR-IAQIAEYLGIAHVVLDTG 112 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc-cCCCCeEEEEeCCchH--HH-HHHHHHHcCCcEEEEECC
Confidence 5789999999999999765456889999999999999999 46777755 4444432 11 246678899999999987
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
.++.++++++++++++++ +++++.+++.+|.||..+|++ |.++||++|++++||++|.+|. .++++..+++|
T Consensus 113 -~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~--~~~~~~~~~~d 185 (368)
T PRK13479 113 -EDEPPDAAEVEAALAADP----RITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGA--IPIDIAELGID 185 (368)
T ss_pred -CCCCCCHHHHHHHHHhCC----CCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCC--ccccccccCce
Confidence 455789999999987532 457899999999999999999 9999999999999999998887 58999999999
Q ss_pred EEEEccccc-cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCC
Q 006746 328 FLICSFYQI-FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 406 (632)
Q Consensus 328 f~~~S~hK~-~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~ 406 (632)
++++|+||+ +| |.|+|+++++++.++.+......-..+. ...| .+. ...+..
T Consensus 186 ~~v~s~~K~l~g--~~G~G~l~~~~~~~~~~~~~~~~~~~~~----~~~~-----------------~~~-~~~~~~--- 238 (368)
T PRK13479 186 ALISSANKCIEG--VPGFGFVIARRSELEACKGNSRSLSLDL----YDQW-----------------AYM-EKTGQW--- 238 (368)
T ss_pred EEEecCcccccc--CCCceEEEECHHHHHHhhcCCCCeeecH----HHHH-----------------hhh-cccCCC---
Confidence 999999995 46 8899999999988776654221000000 0000 000 001111
Q ss_pred ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccC
Q 006746 407 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQ 485 (632)
Q Consensus 407 ~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~ 485 (632)
..|++++.+.++. ++++.+.+. |++++.+|++.+.+++++.|.++
T Consensus 239 ---------~~t~~~~~~~~l~------------------------~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 284 (368)
T PRK13479 239 ---------RFTPPTHVVAAFY------------------------QALLELEEEGGVPARGARYANNQRTLVAGMRAL- 284 (368)
T ss_pred ---------CCCCcHHHHHHHH------------------------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 1246677778886 899977655 58999999999999999999987
Q ss_pred CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhc
Q 006746 486 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 565 (632)
Q Consensus 486 h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~ 565 (632)
| ++++.+.. ...+.+++|.+.+.. .++.+.+.+.+.++||.++.|..
T Consensus 285 -----g---~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gi~v~~g~~---------------------- 331 (368)
T PRK13479 285 -----G---FEPLLDAE-IQSPIIVTFHAPADP--AYDFKEFYERLKEQGFVIYPGKL---------------------- 331 (368)
T ss_pred -----C---CcccCCch-hcCceEEEEECCCCC--CcCHHHHHHHHHHCCEEEecCCC----------------------
Confidence 4 34555431 223456777765422 24556666666677999976521
Q ss_pred cccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 566 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.+|+|.+.++|.||+++++++|+++++.
T Consensus 332 ---------------~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~ 363 (368)
T PRK13479 332 ---------------TQVDTFRIGCIGDVDAADIRRLVAAIAEALYW 363 (368)
T ss_pred ---------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 01248999987899999999999999998764
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=261.58 Aligned_cols=349 Identities=17% Similarity=0.166 Sum_probs=269.3
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCccEE
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMV 193 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vv 193 (632)
.-|=...++.+++++..-+.. +|++ .-..++.++++.+..+|+++ +.+.++
T Consensus 10 ~PGP~~v~~~V~~am~~~~~~--------h~s~--------------------~F~~~~~~~~~~L~~v~~t~-~~~~~l 60 (383)
T COG0075 10 TPGPVPVPPRVLLAMARPMVG--------HRSP--------------------DFVGIMKEVLEKLRKVFGTE-NGDVVL 60 (383)
T ss_pred eCCCCCCCHHHHHHhcCCCCC--------CCCH--------------------HHHHHHHHHHHHHHHHhcCC-CCcEEE
Confidence 355567889999997652211 1121 12578899999999999998 345788
Q ss_pred EeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCc
Q 006746 194 FTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ 272 (632)
Q Consensus 194 ft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~ 272 (632)
+++++|.|+...+.++ .++||+|| ....-++ .++.++++++|++|+.+..+|.. .+++++++++|+++ +.
T Consensus 61 l~gsGt~amEAav~sl-~~pgdkVLv~~nG~FG---~R~~~ia~~~g~~v~~~~~~wg~-~v~p~~v~~~L~~~----~~ 131 (383)
T COG0075 61 LSGSGTLAMEAAVASL-VEPGDKVLVVVNGKFG---ERFAEIAERYGAEVVVLEVEWGE-AVDPEEVEEALDKD----PD 131 (383)
T ss_pred EcCCcHHHHHHHHHhc-cCCCCeEEEEeCChHH---HHHHHHHHHhCCceEEEeCCCCC-CCCHHHHHHHHhcC----CC
Confidence 8899999999999999 78999965 5667665 35689999999999999999754 68999999999853 35
Q ss_pred eeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeC
Q 006746 273 RGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 273 ~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
.++|+++|+.+.||+++|++ |+++||++|.+++||+.+++|. .++++++|++|+++.+++|.++. |+|+|++.+++
T Consensus 132 ~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg--~~~~vd~wgiDv~itgSQK~l~~-PPGla~v~~S~ 208 (383)
T COG0075 132 IKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGG--EPLKVDEWGIDVAITGSQKALGA-PPGLAFVAVSE 208 (383)
T ss_pred ccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCC--cccchhhcCccEEEecCchhccC-CCccceeEECH
Confidence 78999999999999999999 9999999999999999988887 59999999999999999998887 88999999999
Q ss_pred CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhh
Q 006746 352 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE 431 (632)
Q Consensus 352 ~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~ 431 (632)
++++.++..... .++.....+| .+.+ ..+..+ -||.++.+++|.
T Consensus 209 ~a~e~~~~~~~~---~~ylDL~~~~-----------------~~~~-~~~~~p------------~Tppv~~i~aL~--- 252 (383)
T COG0075 209 RALEAIEERKHP---SFYLDLKKWL-----------------KYME-KKGSTP------------YTPPVNLIYALR--- 252 (383)
T ss_pred HHHHHHhcCCCC---ceeecHHHHH-----------------HHHh-hcCCCC------------CCCCHHHHHHHH---
Confidence 998877543210 0010111111 1111 012333 356777899998
Q ss_pred hhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCC-cEE
Q 006746 432 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG-PAL 510 (632)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg-~iv 510 (632)
++|+.+.+.|++++.+|++.+.++++.++..| | ++++.. +..++ .++
T Consensus 253 ---------------------~al~~i~~EGle~r~~RH~~~~~a~r~~~~al------G---l~~~~~--~~~~s~tvt 300 (383)
T COG0075 253 ---------------------EALDLILEEGLEARIARHRRLAEALRAGLEAL------G---LELFAD--PERRSPTVT 300 (383)
T ss_pred ---------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CccccC--cccCCCceE
Confidence 99999999999999999999999999999999 6 456662 23445 555
Q ss_pred EEEEccCCCCccCH-HHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEc
Q 006746 511 AFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS 589 (632)
Q Consensus 511 aFnv~~~~G~~i~~-~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvS 589 (632)
+|.++.. ++. .....+.+++||.+..|. +......+||+
T Consensus 301 a~~~P~g----~~~~~~~~~~~~~~g~~i~gg~------------------------------------~~l~gkifRIG 340 (383)
T COG0075 301 AIKVPEG----VDDKKVRRALLKEYGVEIAGGQ------------------------------------GPLKGKIFRIG 340 (383)
T ss_pred EEECCCC----CCcHHHHHHHHHhCCEEecccc------------------------------------cccCccEEEEe
Confidence 6666542 443 344467888899998662 12233589999
Q ss_pred c-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 590 L-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 590 l-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
. | +-+.+||.+.+++|...|..
T Consensus 341 hMG-~~~~~dv~~~l~ale~~L~~ 363 (383)
T COG0075 341 HMG-NVRPEDVLAALAALEAALRE 363 (383)
T ss_pred cCc-cCCHHHHHHHHHHHHHHHHH
Confidence 4 7 99999999999999987665
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=260.37 Aligned_cols=353 Identities=13% Similarity=0.009 Sum_probs=246.2
Q ss_pred CceEeecCC--------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 108 NHTCLDYFG--------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 108 ~~vyLD~ag--------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
..+|||+++ ++++.+.+.+.+...+... .+||++ .|... ++++++|+.+
T Consensus 33 ~~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~-------------------~~np~s---~~~~~-~le~~~~~~l 89 (431)
T TIGR01788 33 DELSLDGNPRLNLATFVTTWMEPEARKLMDETINKN-------------------MIDKDE---YPQTA-EIENRCVNML 89 (431)
T ss_pred HHhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcC-------------------CCCccc---CccHH-HHHHHHHHHH
Confidence 356777777 6666666788776654321 145544 24444 8999999999
Q ss_pred HHHcCCC-C-CCccEEEeCCHHHHHHHHHhhCCC-------CCC-----CeEEEe-ccccchhhHHHHHHHHhcCCEEEE
Q 006746 180 MDFLNIS-E-NDYGMVFTANRTSAFKLLAESYPF-------MSV-----KNLLTV-YDYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 180 a~~l~a~-~-~ey~vvft~naT~al~lv~~sl~~-------~~g-----d~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
+++||++ + ++..-+||+++|+|.++++.+... +.| .+|+++ .+|.| | ...++..|++++.
T Consensus 90 a~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~s----v-~ka~~~lg~~v~~ 164 (431)
T TIGR01788 90 ADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVC----W-EKFARYFDVELRE 164 (431)
T ss_pred HHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHH----H-HHHHHHcCceeEE
Confidence 9999998 3 332233489999999987755321 111 245554 46654 3 3456678999999
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC------CcEEEEecccc------
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN------DWHILIDACAL------ 311 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~------g~~vlvDaaq~------ 311 (632)
+|++...+.+|+++|+++|++++ .||++++++|.||.+.|++ |+++|+++ |++++|||||.
T Consensus 165 i~~d~~~~~vd~~~L~~~i~~~t------~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~ 238 (431)
T TIGR01788 165 VPMDPGRYVIDPEQVVEAVDENT------IGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPF 238 (431)
T ss_pred EecCCCceeeCHHHHHHHHhhCC------eEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHH
Confidence 99984335899999999998764 8999999999999999999 99999999 99999999999
Q ss_pred -CCCCCCCCCCCCCCCcEEEEcccccc-CCCCCceEEEEEeCCC--cccc--CCCCCCC-ceeecccccccccccccCCC
Q 006746 312 -GPKDMDSFGLSLVRPDFLICSFYQIF-GENPSGFGCLFVKKST--VPIL--VDNTSSG-MVSLLPAKKQLWLTDEFSSC 384 (632)
Q Consensus 312 -~g~~m~~ldls~~~~Df~~~S~hK~~-G~~P~G~G~L~Vr~~~--~~~L--~~~~~gG-~v~~~~~~~~~~~~~~~~~~ 384 (632)
.+. .++|+...++|.+++|+|||+ | |.|+|+||+|++. ...+ .+.|.+| ..+ +
T Consensus 239 ~~~~--~~~~~~~~~~DSis~s~HK~~~~--P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~--------~-------- 298 (431)
T TIGR01788 239 VYPD--LEWDFRLPRVKSINVSGHKYGLV--YPGVGWVIWRDEEALPEELIFHVNYLGGDEPT--------F-------- 298 (431)
T ss_pred hCCC--chhhcCCCCceEEEECchhccCC--CCCcEEEEEeChHHcchhheecccccCCCCCC--------c--------
Confidence 444 466777778999999999976 6 9999999999862 1111 1112221 000 0
Q ss_pred CCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHH
Q 006746 385 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 464 (632)
Q Consensus 385 ~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~ 464 (632)
.+ .++ |+|+. .+..+ ..|..+-..|+.
T Consensus 299 t~-------------~~s------------R~g~~---al~~w-------------------------~~l~~lG~~G~~ 325 (431)
T TIGR01788 299 TL-------------NFS------------RPANQ---VIAQY-------------------------YNFLRLGREGYR 325 (431)
T ss_pred ce-------------ecC------------chHHH---HHHHH-------------------------HHHHHhcHHHHH
Confidence 00 011 11110 01111 344444457899
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccC
Q 006746 465 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLH 544 (632)
Q Consensus 465 ~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c 544 (632)
.+.+|...|+++|.+.|.++ |.++|++|. .+.++|+|++.+.+...++...+.+.+++.||.+..= .+
T Consensus 326 ~i~~~~~~la~~l~~~L~~~--------~~~el~~~~---~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~-~~ 393 (431)
T TIGR01788 326 KIMQNSLDVARYLAEEIAKL--------GPFEIISDG---SGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAY-TL 393 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhC--------CCEEEeeCC---CCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCC-CC
Confidence 99999999999999999987 779999873 3789999999864333366777777777788865210 00
Q ss_pred ChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 545 HIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.. .-.+.-++|+..-...+.+-+++|++-|+..+.
T Consensus 394 p~--------------------------------~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~ 428 (431)
T TIGR01788 394 PK--------------------------------NAEDIVVMRIVVREGFSRDLAELLIEDIEAALA 428 (431)
T ss_pred CC--------------------------------ccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 00 011345899999888999999999999987654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=251.88 Aligned_cols=322 Identities=16% Similarity=0.147 Sum_probs=237.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCe-EEEeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKN-LLTVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~-ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.++++++|+.+++++|++++...|++|+|+|+++.+++.++ +.++++ |++...+++.. +...++..|++++.+++
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~-~~~~~~vi~~~~~~~~~~---~~~~a~~~g~~~~~i~~ 105 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL-VPRDGKLLVLINGAYGER---LAKICEYLGIPHTDLNF 105 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc-cCCCCeEEEECCCchhhH---HHHHHHHcCCceEEEec
Confidence 37789999999999999875446889999999999999998 456776 44544443311 24567789999999998
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+ ....++.+++++.+++++ +.++++++|.+|.||..+|++ |+++|+++|+++++|++++.|. .++++..+++
T Consensus 106 ~-~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~--~~~~~~~~~~ 178 (355)
T TIGR03301 106 S-EYEPPDLNRIEEALAADP----DITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGA--IPIDIEELDV 178 (355)
T ss_pred C-CCCCCCHHHHHHHHHhCC----CceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCC--cccchhhcCc
Confidence 7 446789999999997532 467899999999999999999 9999999999999999998886 4788888999
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCC
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 406 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~ 406 (632)
|++++|+||+++. |.|+|++++++++++.+......-..+. ...| .+.+. .+.
T Consensus 179 d~~~~s~~K~l~~-~~G~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------------~~~~~-~~~---- 231 (355)
T TIGR03301 179 DALIASANKCLEG-VPGFGFVIARRDLLEASAGNARSLYLDL----YDQW-----------------AYMEK-TGK---- 231 (355)
T ss_pred cEEEecCCccccc-CCceeEEEECHHHHHHhhCCCCCceeeH----HHHH-----------------HHhhh-cCC----
Confidence 9999999996532 7799999999998776542111000000 0000 00000 011
Q ss_pred ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHccC
Q 006746 407 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQ 485 (632)
Q Consensus 407 ~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G-l~~I~~r~~~L~~~L~~~L~~l~ 485 (632)
..++++.+.+.++. .+|+.+.+.| ++.+.+|.+.+.+++++.|.++
T Consensus 232 --------~~~t~~~~~~~a~~------------------------~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~- 278 (355)
T TIGR03301 232 --------WRFTPPTHTVYAFA------------------------QALEELEAEGGVPARIARYRRNRELLVDGLRAL- 278 (355)
T ss_pred --------CCCCCcHHHHHHHH------------------------HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-
Confidence 12345666677776 8899887777 9999999999999999999887
Q ss_pred CCCCCCCCcEEEECCCCCCCCCc-EEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhh
Q 006746 486 HPNTEGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 564 (632)
Q Consensus 486 h~~~~G~p~v~Iygp~~~~~rg~-ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~ 564 (632)
| ++++.+.. .+++ ++.|.+++. ...+...+.+.+.++||.++.|..
T Consensus 279 -----g---~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~i~~~~~--------------------- 325 (355)
T TIGR03301 279 -----G---FQPLLPER--WQSPIIVSFLYPDD--PDFDFDDFYQELKERGFVIYPGKL--------------------- 325 (355)
T ss_pred -----C---CeeecCCC--CCCCcEEEEECCCC--CcchHHHHHHHHHHCCEEEECCcc---------------------
Confidence 4 34555542 3444 567776531 113455677777778999976521
Q ss_pred ccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 565 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
. ..+.||+|++.+++.+|++++++.|++.|
T Consensus 326 ---------------~-~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 326 ---------------T-LADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred ---------------c-cccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 0 11689999999999999999999998754
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=242.62 Aligned_cols=340 Identities=15% Similarity=0.082 Sum_probs=249.3
Q ss_pred cCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc
Q 006746 104 LSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (632)
Q Consensus 104 L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l 183 (632)
++.+...|+-|-...-++++.++.+..+... ..+||.+...+|....++++++++.++++|
T Consensus 18 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~-------------------n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~ 78 (380)
T PRK02769 18 LRHNQYFNVGYPEAADFDYSALKRFFSFSIN-------------------NCGDPYSKSNYPLNSFDFERDVMNFFAELF 78 (380)
T ss_pred HHHhhhcccCCCchhhcCHHHHHHHHHhhhc-------------------cCCCccccCCCCCChHHHHHHHHHHHHHHh
Confidence 4334556888888888888888887654321 115666666667777889999999999999
Q ss_pred CCCCCCccEEEeCCHHHHHHHHHhh-CCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 184 NISENDYGMVFTANRTSAFKLLAES-YPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 184 ~a~~~ey~vvft~naT~al~lv~~s-l~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
|+++++...+||+++|++..+.... ..+.++++|++ ..+|+| + ...++..|.+++.++.+ +++++|.++|++
T Consensus 79 g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~S--v---~ka~~~lg~~~~~V~~~-~~g~id~~~L~~ 152 (380)
T PRK02769 79 KIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYS--V---SKIARLLRIKSRVITSL-PNGEIDYDDLIS 152 (380)
T ss_pred CCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceeh--H---HHHHHHcCCCCceeccC-CCCcCcHHHHHH
Confidence 9987654458999999996654332 23456778765 457776 2 23445678888888887 788999999999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCC---cEEEEeccccCCCCCC-------CCCCCCCCCcEEE
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEND---WHILIDACALGPKDMD-------SFGLSLVRPDFLI 330 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g---~~vlvDaaq~~g~~m~-------~ldls~~~~Df~~ 330 (632)
+|+++ ..++.++++++.++.||.+.|++ |+++|+++| ++++|||||.++. . ++|+.. ++|+++
T Consensus 153 ~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~--~p~~~~~~~~d~~~-~vDsis 226 (380)
T PRK02769 153 KIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMI--LPFVNNPPPFSFAD-GIDSIA 226 (380)
T ss_pred HHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEeccccee--ecccCccccCCccC-CCCEEE
Confidence 99875 23568999999999999999999 999999998 6999999999876 3 478777 999999
Q ss_pred EccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccch
Q 006746 331 CSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS 410 (632)
Q Consensus 331 ~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~ 410 (632)
+|+|||+|. |.|+|+||+|++.+..+.+. . . |.... + .. .
T Consensus 227 ~s~HK~~~~-P~g~G~l~~r~~~~~~~~~~--~----------~-yl~~~------d-----~t----~----------- 266 (380)
T PRK02769 227 ISGHKFIGS-PMPCGIVLAKKKYVERISVD--V----------D-YIGSR------D-----QT----I----------- 266 (380)
T ss_pred ECCcccCCC-CCCcEEEEEehhhhhhcccC--c----------c-ccCCC------C-----CC----c-----------
Confidence 999998887 99999999999876554331 0 0 10000 0 00 1
Q ss_pred hhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCC
Q 006746 411 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE 490 (632)
Q Consensus 411 ~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~ 490 (632)
.|+++...+.++- .+|+.+...|+.++.++...|+++|.+.|.++
T Consensus 267 -----~GSR~g~~~l~lw------------------------~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~------ 311 (380)
T PRK02769 267 -----SGSRNGHTALLLW------------------------AAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN------ 311 (380)
T ss_pred -----cCCCCcHHHHHHH------------------------HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 3444544455554 88999988999999999999999999999876
Q ss_pred CCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccc
Q 006746 491 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 570 (632)
Q Consensus 491 G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 570 (632)
| +++++. ....+|+|..++ .. + . .+-+|.+
T Consensus 312 g---~~~~~~----p~~~~v~f~~~~-------~~-~---~--~~w~l~~------------------------------ 341 (380)
T PRK02769 312 G---IPAWRN----PNSITVVFPCPS-------ER-I---W--KKWHLAT------------------------------ 341 (380)
T ss_pred C---CEEEcC----CCceEEEEcCCC-------HH-H---H--hCeeEcc------------------------------
Confidence 4 455553 357788886443 11 1 1 2333321
Q ss_pred ccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 571 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 571 ~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
-...+|+..-...|.|.|+.|++-|+..+
T Consensus 342 -----------~~~~~hi~~~~~~~~~~~~~f~~dl~~~~ 370 (380)
T PRK02769 342 -----------SGNQAHIITMPHHNKQQIDSLIDELIFDL 370 (380)
T ss_pred -----------cCCEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 01378888878889999999999888654
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-29 Score=269.01 Aligned_cols=397 Identities=20% Similarity=0.169 Sum_probs=286.6
Q ss_pred HHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHH
Q 006746 97 RAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMK 176 (632)
Q Consensus 97 R~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R 176 (632)
|++||.+| + |||+++.++++++|++...--.... ...|||++..-+......++++|
T Consensus 14 r~~e~s~~--~---yldhag~tl~sesq~~g~~~~sq~~------------------e~~nphs~~~ts~~l~~~v~Q~r 70 (728)
T KOG2142|consen 14 RDREFSRL--A---YLDHAGRTLFSESQLEGVAFQSQSS------------------ENANPHSHLGTSRSLARLVAQVR 70 (728)
T ss_pred hhHHHHHH--H---HHHhhhhhhhhhcccchhhhhhhcc------------------ccCCCcccccchHHHHHHHHHHH
Confidence 77889887 3 9999999999999999832211100 12567776654555578999999
Q ss_pred HHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCC-CCeEE---Eec-cccchhhHHHHHHHHhcCCEEEEE-ecc--
Q 006746 177 KRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMS-VKNLL---TVY-DYESEAVEAMIRTSEKRGARVMSA-EFS-- 248 (632)
Q Consensus 177 ~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~-gd~il---t~~-d~~s~~v~~~~~~a~~~G~~v~~v-~~~-- 248 (632)
-+|..+|+....+|+++||. .|+||++++++|||-. +.++. .++ .|-+.+...|+. .-.|+-+..+ ...
T Consensus 71 ~ril~~f~tta~dy~v~lp~-~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~--~~~~~gl~sy~q~~~i 147 (728)
T KOG2142|consen 71 LRILALFNTTAFDYEVSLPA-LTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRL--DYSGIGLFSYSQTNEI 147 (728)
T ss_pred HHHHHHhccccccccchhHH-HHHHHHHHHHhCccccccccccchhhhhhcccccccceeee--eeeccceEEeeeeeec
Confidence 99999999999999999998 9999999999999853 43342 333 333333222332 1223333333 111
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHh-hCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQ-ENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~-~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
|+....+.... ........|+.++.++|+.|.++-..|+...+ ..+|+++||++..+.. .+||++.+++|
T Consensus 148 ~~~~~~sls~~-------~~~ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSa--f~Ldaesy~f~ 218 (728)
T KOG2142|consen 148 SDSEEFSLSES-------EANLSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSA--FPLDAESYPFD 218 (728)
T ss_pred ccccccccccc-------ccCcccchhcccchhcccccceeeeeeecccccCCceEEEEEeeccccc--ccchHhhCCCc
Confidence 22211111111 11123568999999999999996555666555 7899999999999987 69999999999
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCc
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 407 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~ 407 (632)
|... +||+||+ |+ |+|.+.++..+.. .||+++...+...++.... +++ .+ +++||.+|-.
T Consensus 219 ~~~~-lltiFgy-et--gAvlv~~r~A~~~----Ggkt~sa~f~wp~~~l~s~----~lk-----kr---~e~gk~~~kd 278 (728)
T KOG2142|consen 219 FNPK-LLTIFGY-ET--GAVLVMNRSAELK----GGKTASAEFSWPMLYLLSE----KLK-----KR---FEDGKLRFKD 278 (728)
T ss_pred ccch-heeecCC-Cc--hhhHHHhhhhHhh----cCccceeecccchHHHHHH----HHH-----HH---Hhhccccccc
Confidence 9999 9999998 77 8888877765433 3366654322222211111 111 12 4688888876
Q ss_pred cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHccC
Q 006746 408 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRGRCLINWLVNALMKLQ 485 (632)
Q Consensus 408 ~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~--Gl~~I~~r~~~L~~~L~~~L~~l~ 485 (632)
+... + .++..+.++ |+..|..+...|.+++.-.|.++.
T Consensus 279 ~a~g---------------l-------------------------~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~ 318 (728)
T KOG2142|consen 279 IAQG---------------L-------------------------FVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALA 318 (728)
T ss_pred hhhh---------------e-------------------------eccchHhhhcccchhHHHHHHHHhhhHHHHHhhhc
Confidence 5432 1 344444444 699999999999999999999998
Q ss_pred CCCCCCCCcEEEECCC--CCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHH----hhhhh
Q 006746 486 HPNTEGNALVKIYGPK--IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK----EKDNV 559 (632)
Q Consensus 486 h~~~~G~p~v~Iygp~--~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~----~~~~~ 559 (632)
| |.|++++||.. .+.-.+++++||+.+.+|..+..-+|.|.+ -.||.+|+||+||+|+|+.+++ .....
T Consensus 319 l----G~kdmd~yglS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~-i~~l~lrtGcfcn~Gack~~pgl~~~~~~~~ 393 (728)
T KOG2142|consen 319 L----GPKDMDSYGLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSA-ISGLELRTGCFCNIGACKIYPGLYLEMSQKG 393 (728)
T ss_pred c----CcchHhhhhhhccCccceeeeEEEEeccCCCCceeeeeeehhh-hhceeccCCCCCCCcceeecccccHHHHHHH
Confidence 8 77999999864 345679999999999889999999999998 8999999999999999998875 45666
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~ 608 (632)
++++.+|++. ++.+ +| |+++|.+||+++..++.+
T Consensus 394 ~~~g~~cgD~---------dg~~-----~s-~~~~~~~~~~a~~~~~v~ 427 (728)
T KOG2142|consen 394 LSAGKGCGDN---------DGQP-----VS-GYMQTPADVGAYLSAQVS 427 (728)
T ss_pred hhhccccccC---------CCCc-----cc-ccccchhhhhHHHHHhhh
Confidence 7888999864 1222 88 999999999999988764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=238.65 Aligned_cols=302 Identities=14% Similarity=0.069 Sum_probs=219.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC---CCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY---PFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl---~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
..+++++|+.+++++|+++. .++||+++|+++..++.++ .++++++|++. .+|.+ | ...++..|++++.
T Consensus 58 ~~~~~~~~~~la~~~g~~~~--~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s----~-~~~~~~~g~~~~~ 130 (371)
T PRK13520 58 AKLEEEAVEMLGELLHLPDA--YGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFS----F-DKAADMLGVELRR 130 (371)
T ss_pred HHHHHHHHHHHHHHhCCCCC--CeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHH----H-HHHHHHcCceEEE
Confidence 46678999999999999754 5789999999998876554 33467887754 45543 3 4556778999999
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC---CC--CC
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK---DM--DS 318 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~---~m--~~ 318 (632)
++.+ +++.+++++|+++|++++ .++++.+.+|.||...|++ |.++|+++|++++||++|.++. .. ..
T Consensus 131 v~~~-~~~~~d~~~l~~~i~~~~------~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~ 203 (371)
T PRK13520 131 APLD-DDYRVDVKAVEDLIDDNT------IGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPN 203 (371)
T ss_pred ecCC-CCCcCCHHHHHHHHhhCC------EEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCC
Confidence 9987 466789999999998653 6777888889999999999 9999999999999999987542 00 12
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCC-CccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhh
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 397 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~-~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 397 (632)
+++...++|++++|+||+.+. |.+.|+++++++ .++.+... .+++.... .+
T Consensus 204 ~~~~~~~vd~~~~s~~K~~~a-~~~~G~~~~~~~~~~~~l~~~------------~~~~~~~~-------------~~-- 255 (371)
T PRK13520 204 FDFSLPGVDSITIDPHKMGLA-PIPAGGILFRDESYLDALAVD------------TPYLTSKK-------------QA-- 255 (371)
T ss_pred ccccCCCCceEEECCccccCc-cCCceEEEEcCHHHHHhhccc------------CccccCCC-------------Cc--
Confidence 566667899999999997654 778998998765 44433210 00110000 00
Q ss_pred hhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHH
Q 006746 398 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477 (632)
Q Consensus 398 ~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L 477 (632)
...|| ++.+.+.++. .+|+.+...|++++.++...++++|
T Consensus 256 ~~~gt----------------~~~~~~~~~~------------------------~al~~l~~~g~~~~~~~~~~~~~~l 295 (371)
T PRK13520 256 TLTGT----------------RSGAGVAATY------------------------AVMKYLGREGYRKVVERCMENTRWL 295 (371)
T ss_pred ceEee----------------ccChHHHHHH------------------------HHHhhhcHhHHHHHHHHHHHHHHHH
Confidence 01233 3333344444 7888877778999999999999999
Q ss_pred HHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 478 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 478 ~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
++.|.++ | ++++.+ ...++++|.+. +.+.+.+.+.++||.++.+
T Consensus 296 ~~~L~~~------g---~~~~~~----~~~~~v~~~~~-------~~~~v~~~L~~~gi~v~~~---------------- 339 (371)
T PRK13520 296 AEELKER------G---FEPVIE----PVLNIVAFDDP-------NPDEVREKLRERGWRVSVT---------------- 339 (371)
T ss_pred HHHHHhC------C---CEEecC----CCceEEEEecC-------CHHHHHHHHHHCCceeccC----------------
Confidence 9999987 4 342222 13568888764 3456666666679988642
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
....+||+|++.++|.+||++|++.|++.++
T Consensus 340 -----------------------~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 340 -----------------------RCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred -----------------------CCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 0135899999999999999999999998764
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=238.06 Aligned_cols=347 Identities=13% Similarity=0.069 Sum_probs=246.0
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
++|+=.+|=..+|..|++++.+.+-..... .+... ..+| .+..-.++++++++.+.++++++ +
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~------g~s~~--------~~sH--Rs~~f~~i~~~~~~~L~~l~~~p-~ 69 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGS------GMSVM--------EMSH--RGKEFLSIIQKAEADLRELLDIP-D 69 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhccccc------Ccccc--------ccCC--CchHHHHHHHHHHHHHHHHhCCC-C
Confidence 467666777799999999977543211000 00000 0011 02223689999999999999985 5
Q ss_pred CccEEEe-CCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCc--cccCHHHHHHHHH
Q 006746 189 DYGMVFT-ANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPR--LRINSEKLRKMVV 264 (632)
Q Consensus 189 ey~vvft-~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~--~~i~~~~l~~~i~ 264 (632)
+|.|+|. .++|.++..+..++ ..+|++++ ......++ .+.+.|++.|...+.+...+.. ..++++++ +
T Consensus 70 ~y~v~~l~Gsgt~~~ea~~~nl-~~~~~~~l~~~~G~fg~---r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~ 141 (365)
T PLN02452 70 NYEVLFLQGGASTQFAAIPLNL-CKPGDKADFVVTGSWSK---KAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----E 141 (365)
T ss_pred CceEEEEeCccHHHHHHHHHhc-CCCCCeEEEEECCHHHH---HHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----C
Confidence 6887766 78999999999998 66888854 55676652 3466788898754444322211 12455554 2
Q ss_pred hcCcCCCceeEEEEeccCCCCccc-cchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGAR-YPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~-~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
. .+....|.++|..+.||+. .|++ +. +++++||++|++|. .++|+++|++|| +|+||.+| |.
T Consensus 142 ~----~~~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~--~pidv~~~~v~~--~saqK~lG--P~ 205 (365)
T PLN02452 142 L----TPDAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLS--KPVDVSKYGVIY--AGAQKNVG--PS 205 (365)
T ss_pred C----CCCCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccC--cccCHHHcCEEE--EecccccC--CC
Confidence 1 1346899999999999996 8877 54 38999999999998 699999999988 59999999 89
Q ss_pred ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccc
Q 006746 343 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 422 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~ 422 (632)
|+|++++|+++++++++.... .. .| .+. .+.++ ..+||++.
T Consensus 206 Gl~~v~vr~~~l~~~~~~~~~-~~--------~~-----------------~~~-~~~~s------------~~~TP~v~ 246 (365)
T PLN02452 206 GVTIVIIRKDLIGNARPITPG-ML--------DY-----------------KIH-AENDS------------LYNTPPCF 246 (365)
T ss_pred CeEEEEEcHHHHhhcccCCCc-hh--------hH-----------------HHH-HhcCC------------ccCChhHH
Confidence 999999999998776532110 00 01 010 01111 14678999
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCC
Q 006746 423 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 501 (632)
Q Consensus 423 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~ 501 (632)
.|+++. .+|+++.+. |++++.+|.+.++++|++.|.++ +.+ |++.
T Consensus 247 ~i~~l~------------------------~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~--------~G~--y~~~ 292 (365)
T PLN02452 247 GIYMCG------------------------LVFEDLLAQGGLKAMEKRNIRKADLLYDAIDES--------NGF--YVCP 292 (365)
T ss_pred HHHHHH------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC--------CCc--ccCC
Confidence 999998 999999986 89999999999999999999986 333 5543
Q ss_pred -CCCCC-CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccC
Q 006746 502 -IRFDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKA 579 (632)
Q Consensus 502 -~~~~r-g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 579 (632)
++..| ..+|+|++.+.+ ..+.+.+.+.++||..-.|.
T Consensus 293 ~~~~~rs~~~vsF~~~~~~----~~~~f~~~~~~~g~~~~~G~------------------------------------- 331 (365)
T PLN02452 293 VEKSVRSLMNVPFTLGGSE----LEAEFVKEAAKAGMVQLKGH------------------------------------- 331 (365)
T ss_pred CChHHhCCeEEEEEcCCch----hHHHHHHHHHHCCCcccCCc-------------------------------------
Confidence 22334 459999998742 34566677778888875441
Q ss_pred CCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 580 NLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 580 ~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+..|.+|||+=--.+.|||++|++|+++|-.
T Consensus 332 -r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 332 -RSVGGMRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred -cccCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 1234599999888999999999999999854
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=234.18 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=170.9
Q ss_pred CceEeec-CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc-ccccccchhHHHHHHHHHHHHHcCC
Q 006746 108 NHTCLDY-FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 108 ~~vyLD~-ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s-~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
..+.||- .-.|++++.+++++.++... ++|+++ .+..+......++++|+.+++++|+
T Consensus 19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~ 78 (387)
T PRK09331 19 EFINLDPIQRGGILTPEARKALIEYGDG--------------------YSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM 78 (387)
T ss_pred cccccChhhcCCCCCHHHHHHHHHHHhc--------------------cCCCcccccccccccChHHHHHHHHHHHHhCC
Confidence 3444554 35789999999998876531 134333 2222333456789999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc-CCccccCHHHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS-WPRLRINSEKLRKMV 263 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~-~~~~~i~~~~l~~~i 263 (632)
+ .++||+|+|+|+.+++.++ +++|++|++. .+|.+. . ..++..|++++.++.+ .+++.++++++++.|
T Consensus 79 ~----~~~~~~g~t~a~~~al~~l-~~~gd~Vlv~~~~h~s~-~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l 148 (387)
T PRK09331 79 D----EARVTHGAREGKFAVMHSL-CKKGDYVVLDGLAHYTS-Y----VAAERAGLNVREVPKTGYPEYKITPEAYAEKI 148 (387)
T ss_pred C----cEEEeCCHHHHHHHHHHHh-cCCCCEEEECCCchHHH-H----HHHHHcCCEEEEEeCccCcCCCcCHHHHHHHH
Confidence 5 3778999999999999998 7899997765 456652 2 2356789999999983 146779999999999
Q ss_pred HhcCc-CCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCC
Q 006746 264 VSKGK-KKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 264 ~~~~~-~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
.+... ..+++++|++++.++.||...|++ |+++||++|++++||++|++|. .+++...+++|++++|+||++|. |
T Consensus 149 ~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~--~~~~~~~~g~D~~~~s~~K~l~~-~ 225 (387)
T PRK09331 149 EEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGR--MPVDGKKLGADFIVGSGHKSMAA-S 225 (387)
T ss_pred HHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCC--cCCCHHHcCCCEEEeeCcccccC-C
Confidence 75310 113579999999999999999999 9999999999999999999987 58888889999999999998875 8
Q ss_pred CceEEEEEeCCCccccC
Q 006746 342 SGFGCLFVKKSTVPILV 358 (632)
Q Consensus 342 ~G~G~L~Vr~~~~~~L~ 358 (632)
.|+|+++++++.++.+.
T Consensus 226 ~~~G~l~~~~~~i~~~~ 242 (387)
T PRK09331 226 APSGVLATTEEYADKVF 242 (387)
T ss_pred CCEEEEEECHHHHhhcc
Confidence 89999999998776553
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=259.56 Aligned_cols=329 Identities=13% Similarity=0.072 Sum_probs=231.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHH----HHHHHHHhhCCCCC-CC----eEE-EeccccchhhHHHHHHHHhc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRT----SAFKLLAESYPFMS-VK----NLL-TVYDYESEAVEAMIRTSEKR 238 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT----~al~lv~~sl~~~~-gd----~il-t~~d~~s~~v~~~~~~a~~~ 238 (632)
.++++++|+.+++++|++ .|+|++|+| +++++++.+| +++ || +|+ +..+|++|..+| ...
T Consensus 567 ~~~~~~~r~~la~i~g~~----~v~f~pnaga~ge~a~~~vi~~~-~~~~Gd~~r~~vli~~~aH~sn~a~a-----~~~ 636 (993)
T PLN02414 567 QEMFEDLGDLLCEITGFD----SFSLQPNAGAAGEYAGLMVIRAY-HLSRGDHHRNVCIIPVSAHGTNPASA-----AMC 636 (993)
T ss_pred HHHHHHHHHHHHHHhCCC----eEEEcCCCcHHHHHHHHHHHHHH-HhccCCCCCCEEEeCCCcCccCHHHH-----HHC
Confidence 578999999999999993 699999999 9999999999 554 77 555 457999876655 337
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCC
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMD 317 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~ 317 (632)
|++|+.++.+ ++|.+|+++|+++|++++ .++++|++++.||.+|...|++ |+++||++|++++||++|..+. +.
T Consensus 637 G~~vv~v~~d-~~G~vDle~L~~~i~~~~---~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~-~~ 711 (993)
T PLN02414 637 GMKIVVVGTD-AKGNINIEELRKAAEAHK---DNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQ-VG 711 (993)
T ss_pred CCEEEEeccC-CCCCcCHHHHHHHHhccC---CCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhc-cC
Confidence 9999999998 788999999999998643 2579999999999999999999 9999999999999999998876 23
Q ss_pred CCCCCCCCCcEEEEccccccCCCCC-----ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPS-----GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~-----G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
..+..++++||+++|.||+|+. |. |+|+|++++.....|.....+ .. ..+. .+ .++
T Consensus 712 l~~p~~~GaD~~~~s~HK~f~~-P~G~GGPg~G~l~~~~~L~p~lPg~~v~-~~------~~~~-~r------~~~---- 772 (993)
T PLN02414 712 LTSPGFIGADVCHLNLHKTFCI-PHGGGGPGMGPIGVKKHLAPFLPSHPVV-PT------GGIP-RP------EKT---- 772 (993)
T ss_pred cCCccccCCCEEEecCCccCCc-CcccCCCCeeeEEEchhhcccCCCCccc-cC------CCcc-cc------cCC----
Confidence 4555678999999999995443 54 599999999765444322111 00 0000 00 000
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH---HHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI---SRR 469 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I---~~r 469 (632)
.--||.+... ++ ....+ -+++.++..+|.+.+ .++
T Consensus 773 -----s~iGt~~~a~-~g------------~al~l------------------------~~A~~yi~~lG~~Gl~~~a~~ 810 (993)
T PLN02414 773 -----QPLGTISAAP-WG------------SALIL------------------------PISYTYIAMMGSEGLTDASKI 810 (993)
T ss_pred -----CCcCCccchh-hh------------hHHHH------------------------HHHHHHHHHHCHhHHHHHHHH
Confidence 0012221110 00 00112 278888888886666 999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEE-EccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN-VFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFn-v~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
...+++|+.++|.+. ..+.+.+|..+.-+--++.+. +++..| ++...|.+.+-++||...+-.
T Consensus 811 a~~nAnYl~~rL~~~--------~~~~~~~~~~~~~hEfv~~~~~l~~~~g--~~~~di~krL~d~Gihapt~~------ 874 (993)
T PLN02414 811 AILNANYMAKRLEGH--------YPVLFRGKNGTCAHEFIIDLRPFKNTAG--IEPEDVAKRLMDYGFHAPTMS------ 874 (993)
T ss_pred HHHHHHHHHHHHHhh--------CCccccCCCCCeeeeEEEeccccccccC--CCHHHHHHHHHHcCcEEeeec------
Confidence 999999999999874 223344443221122333332 222223 566777765558899865310
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh-cccccccc
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA-DFVEKARW 620 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~-~f~~~~~~ 620 (632)
....+.+||+++.+++.+|+|+|+++|+.++++ .-|+...|
T Consensus 875 -------------------------------~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~~~~g~~ 916 (993)
T PLN02414 875 -------------------------------WPVPGTLMIEPTESESKAELDRFCDALISIREEIADIENGKA 916 (993)
T ss_pred -------------------------------cccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 012468999999999999999999999998877 33444444
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=232.11 Aligned_cols=299 Identities=16% Similarity=0.111 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC---C--CCCCeEEEec-cccchhhHHHHHHHHhcCCEE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP---F--MSVKNLLTVY-DYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~---~--~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v 242 (632)
..+++++|+.+++++|++++ .+++++++|+++.+++.++. . .+|++|+++. +|.+ | ...++..|+++
T Consensus 58 ~~~~~~~~~~la~~~g~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~----~-~~~~~~~G~~~ 130 (373)
T TIGR03812 58 KKIEEEVVGSLGNLLHLPDA--YGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFS----F-EKAAEMLGLEL 130 (373)
T ss_pred HHHHHHHHHHHHHHhCCCCC--CeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHH----H-HHHHHHcCCeE
Confidence 46778999999999999754 57788899999888765542 1 4678887654 5543 3 45567889999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-------
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK------- 314 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~------- 314 (632)
+.++.+ +++.++.+++++++++++ ..++.+. .+|.||...|++ |.++|+++|++++||+++..+.
T Consensus 131 ~~v~~~-~~~~~d~~~l~~~l~~~~-----~~vv~~~-~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~ 203 (373)
T TIGR03812 131 RYAPLD-EDYTVDVKDVEDLIDDNT-----IGIVGIA-GTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKG 203 (373)
T ss_pred EEEeeC-CCCCcCHHHHHHHHhhCc-----EEEEEEC-CCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcC
Confidence 999987 567899999999997643 2444444 689999999999 9999999999999999986432
Q ss_pred -CCCCCCCCCCCCcEEEEccccccCCCCCceEEEEE-eCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 315 -DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV-KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 315 -~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~V-r~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
....+|+...++|++++|+|||... |.+.|++++ +++.++.+... . .|....
T Consensus 204 ~~~~~~d~~~~~~d~~~~s~~K~~~~-~~~~G~~~~~~~~~~~~l~~~--~-----------~~~~~~------------ 257 (373)
T TIGR03812 204 YNPPPFDFSLPGVQSITIDPHKMGLS-PIPAGGILFRSKSYLKYLSVD--A-----------PYLTVK------------ 257 (373)
T ss_pred CCCCCccccCCCCCEEEECccccCCC-cCCceEEEEeCHHHHhhhccc--C-----------cccCCC------------
Confidence 1125677667899999999996433 777877665 44454444210 0 010000
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC 472 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~ 472 (632)
..+ . ..||++.+.+.++. .+|+.+.+.|++++.+|+..
T Consensus 258 ~~~--~----------------~~gt~~~~~~~~~~------------------------~~l~~l~~~g~~~~~~~~~~ 295 (373)
T TIGR03812 258 KQA--T----------------ITGTRSGASAAATY------------------------AVIKYLGREGYRKIVAECME 295 (373)
T ss_pred CCc--c----------------eEeechhHHHHHHH------------------------HHHHHhCHHHHHHHHHHHHH
Confidence 000 0 12444555555555 78888888899999999999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHH
Q 006746 473 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 473 L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
++++|++.|+++ | ...++.| ..++|+|.+.+ ...+.+.+.++||.++.+
T Consensus 296 ~~~~l~~~L~~~------g--~~~~~~~-----~~~~v~~~~~~-------~~~v~~~L~~~gi~v~~~----------- 344 (373)
T TIGR03812 296 NTRYLVEELKKI------G--FEPVIEP-----VLNIVAFEVDD-------PEEVRKKLRDRGWYVSVT----------- 344 (373)
T ss_pred HHHHHHHHHHhC------C--CeEEcCC-----CceEEEEEeCC-------HHHHHHHHHHCCceeccC-----------
Confidence 999999999998 3 2334432 45788887754 234554445569988632
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~ 608 (632)
....+||+|++.++|.+||++|++.|++
T Consensus 345 ----------------------------~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 345 ----------------------------RCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ----------------------------CCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 0235899999999999999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=220.48 Aligned_cols=380 Identities=12% Similarity=0.121 Sum_probs=264.6
Q ss_pred hHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccccccccccchhH
Q 006746 92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESG 170 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~-~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~ 170 (632)
-+..+|. .|. |. ++.||||-.+-|..|+.+..+..+ ...++....-. -|. |.... -.+
T Consensus 18 pl~~lr~-~f~-lp-~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lir-sw~-----------~a~~~------W~~ 76 (407)
T COG3844 18 PLAKLRD-RFA-LP-GGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIR-SWN-----------KAKAD------WFD 76 (407)
T ss_pred chhhhHh-hcc-CC-CCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhh-hhc-----------ccCCc------hhh
Confidence 4567776 476 43 689999999999999655554221 11111000000 011 10000 124
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHH-HHHhhCCCCCCCeEEEec--cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFK-LLAESYPFMSVKNLLTVY--DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~-lv~~sl~~~~gd~ilt~~--d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+-+..-.+++.++||.++ +|+.+.++|.-+. .++.+|..++|+++++.. .+++..... ...++-.|...
T Consensus 77 lp~~lgdklApLiGA~~~--Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a-~g~~~~~~~~~----- 148 (407)
T COG3844 77 LPERLGDKLAPLIGARAG--EVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIA-EGLADLLGIGY----- 148 (407)
T ss_pred chhHHHHHhhhhhcCCCC--ceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhh-cchhhhhcccc-----
Confidence 445778899999999987 6888887777665 455667777788865432 444432221 12222233221
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+ -.+.+.++++.+++++++ .+|.++|+...||..+++. |..+||++|++++.|-|+++|. .+++|+.+++
T Consensus 149 ~-~~~~~~P~~~~~~~~dd~------AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGa--vp~~Lh~~ga 219 (407)
T COG3844 149 D-LEGVIAPRALEEAITDDV------AVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGA--VPVDLHAAGA 219 (407)
T ss_pred c-ceeeeChHHHHHhhccce------EEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCC--cceeecccCC
Confidence 1 123456778999998764 9999999999999999999 9999999999999999999998 7999999999
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCC
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 406 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~ 406 (632)
||.+.+.||.+...|.+.++|||.++..+...+...| ||...+ +|.+. ..|.
T Consensus 220 DfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsg-----------W~gha~----pf~m~-------------~~y~ 271 (407)
T COG3844 220 DFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSG-----------WWGHAR----PFAME-------------EVYA 271 (407)
T ss_pred CeeeeeeceeccCCCCCceeEEecccccccccccccc-----------ccCCCC----cchhh-------------hccC
Confidence 9999999995544499999999999887765554433 443222 22211 0111
Q ss_pred ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCC
Q 006746 407 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH 486 (632)
Q Consensus 407 ~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h 486 (632)
..-++.-.+.||+.+-....|. .+||...+.+|..+.+|...|++++.+-+.....
T Consensus 272 p~~ga~rf~~gt~~V~s~aal~------------------------~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~ 327 (407)
T COG3844 272 PGPGARRFLCGTQPVLSLAALE------------------------GALDIFADVDITELRKKSLALTDYFIELVEARCE 327 (407)
T ss_pred cCccccceeeCCcchhhhHHHh------------------------hhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccc
Confidence 1111111235677777777776 8999999999999999999999999888877632
Q ss_pred CCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcc
Q 006746 487 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE 566 (632)
Q Consensus 487 ~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~ 566 (632)
...++|.+|...+.||+-|||..+. .+ .|.+.+.+.||..
T Consensus 328 -----~~~l~l~tPr~~~~rGsqvS~~hp~------~~-~V~qaLi~rGVig---------------------------- 367 (407)
T COG3844 328 -----YYGLTLVTPRAHEERGSQVSLYHPH------GY-QVMQALIDRGVIG---------------------------- 367 (407)
T ss_pred -----cCCcEEeccchhhhccceeeEecCc------HH-HHHHHHHHcCccc----------------------------
Confidence 2368899999888999999998774 34 4545555556542
Q ss_pred ccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhhhc
Q 006746 567 AKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
+.+.+.++|+.+ -+|++|+||+.-++.|.+.|+..
T Consensus 368 ------------D~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 368 ------------DFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred ------------cccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 245678999998 78999999999999999987754
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=255.60 Aligned_cols=353 Identities=15% Similarity=0.119 Sum_probs=241.1
Q ss_pred ccCcCCCCceEeecCCCCC----CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHH
Q 006746 101 YYQLSLSNHTCLDYFGIGL----FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMK 176 (632)
Q Consensus 101 f~~L~~~~~vyLD~ag~gl----~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R 176 (632)
|..|..++.+|++|.|.|+ +|..+++++..........-| + .+ ....| .-+.+.+.+
T Consensus 94 ~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytP---Y------------qa--EisQG--~lqal~~~Q 154 (993)
T PLN02414 94 MKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTP---Y------------QA--EIAQG--RLESLLNYQ 154 (993)
T ss_pred HHHHHhcCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCC---C------------ch--HHHHH--HHHHHHHHH
Confidence 4446557889999999999 788887887654321111112 0 01 11122 246778999
Q ss_pred HHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC--CeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccc
Q 006746 177 KRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV--KNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLR 253 (632)
Q Consensus 177 ~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g--d~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~ 253 (632)
+.|++++|++++ ++.|+.|+|.+.+.++.++++++| ++|++ ..+|+++... +...+++.|++|+.++.+. .
T Consensus 155 t~ia~LtG~~~a--naSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v-~~t~a~~~GieV~~v~~~~-~-- 228 (993)
T PLN02414 155 TMITDLTGLPMS--NASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDV-CQTRADGLGLEVVVADEKD-F-- 228 (993)
T ss_pred HHHHHHhCCChh--hEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHH-HHHhhhhcCCEEEEecchh-h--
Confidence 999999999987 799999999999999988888765 56765 5688875444 4677889999999998741 1
Q ss_pred cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCC-CCCCCCCcEEEE
Q 006746 254 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSF-GLSLVRPDFLIC 331 (632)
Q Consensus 254 i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~l-dls~~~~Df~~~ 331 (632)
+ ...+. -..++.+..|.+|.+.|++ |+++||++|++++| +++.++. ..+ +..++++||+++
T Consensus 229 -~------~~~~~-------v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal--~~l~~pge~GADi~vg 291 (993)
T PLN02414 229 -D------YSSGD-------VCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLAL--TMLKPPGEWGADIVVG 291 (993)
T ss_pred -c------cccCc-------eEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHh--cCCCCHhhccCcEEEE
Confidence 0 01111 1234578888999999999 99999999999999 7766654 344 478899999999
Q ss_pred ccccccCCCCCc-----eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCC
Q 006746 332 SFYQIFGENPSG-----FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 406 (632)
Q Consensus 332 S~hK~~G~~P~G-----~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~ 406 (632)
++|||.+ |.| +|+||||++....+.....|-+++ ......+. .-+.+.+...+ +|
T Consensus 292 sgqKwg~--P~G~GGP~aGflavr~~~~r~~PgriVG~s~d--~~g~~~~~------l~LqtReqhiR---rE------- 351 (993)
T PLN02414 292 SAQRFGV--PMGYGGPHAAFLATSQEYKRLMPGRIIGVSVD--SSGKPALR------MAMQTREQHIR---RD------- 351 (993)
T ss_pred CCCcccc--CCCCCCCCeeEEEECHHHHhhCCCcccCcccC--CCCCcccc------cccccccchhh---hc-------
Confidence 9999873 555 799999998865444345541111 00000000 00111110011 23
Q ss_pred ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH-----HHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 407 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD-----QVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 407 ~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd-----~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
.||.|+...++|. +++. ++-..|+++|.+|+..|+.+|.++|
T Consensus 352 ---------kaTsNict~qaL~------------------------A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L 398 (993)
T PLN02414 352 ---------KATSNICTAQALL------------------------ANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGL 398 (993)
T ss_pred ---------ccccchhHHHHHH------------------------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3455665556664 4443 2334799999999999999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE 561 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~ 561 (632)
.++ | +++.++ ....+|+|.+.+ +..|.+.+.++||.++.-
T Consensus 399 ~~~------G---~~~~~~----~~f~~vt~~~~~-------~~~v~~~L~~~gI~l~~~-------------------- 438 (993)
T PLN02414 399 KKL------G---FQVQSL----PFFDTVKVKCSD-------ADAIADAAAKVGINLRVV-------------------- 438 (993)
T ss_pred hhc------C---CccCCC----CCcCeEEEecCC-------HHHHHHHHHHCCCeeEEe--------------------
Confidence 876 4 455444 235589998742 355555556689987621
Q ss_pred hhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 006746 562 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~ 608 (632)
..+.||+|++.+||.+||++|+++|+.
T Consensus 439 --------------------~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 439 --------------------DANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred --------------------cCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 124799999999999999999999974
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=213.14 Aligned_cols=325 Identities=16% Similarity=0.133 Sum_probs=250.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
-++++++++-+...|.... .+.+++..+++.|++.++-++ +.|||+||. ...-.+ ..| +..+++.|++|..++.
T Consensus 49 ~qIm~~v~egikyVFkT~n-~~tf~isgsGh~g~E~al~N~-lePgd~vLv~~~G~wg--~ra-~D~~~r~ga~V~~v~~ 123 (385)
T KOG2862|consen 49 VQIMDEVLEGIKYVFKTAN-AQTFVISGSGHSGWEAALVNL-LEPGDNVLVVSTGTWG--QRA-ADCARRYGAEVDVVEA 123 (385)
T ss_pred HHHHHHHHHHHHHHhccCC-CceEEEecCCcchHHHHHHhh-cCCCCeEEEEEechHH--HHH-HHHHHhhCceeeEEec
Confidence 5788999999999999874 478999999999999999998 789999764 445443 334 6778999999999999
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc-hH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP-YL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR 325 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p-l~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~ 325 (632)
+|.. .+..++|+++|..++ +++|+++|..+.||+.+| ++ ...+||+++++++||+++++|. .++-.++|+
T Consensus 124 ~~G~-~~~le~i~~~lsqh~-----p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlgg--t~F~mDewg 195 (385)
T KOG2862|consen 124 DIGQ-AVPLEEITEKLSQHK-----PKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGG--TEFEMDEWG 195 (385)
T ss_pred Cccc-CccHHHHHHHHHhcC-----CceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCC--ccceehhhc
Confidence 8554 589999999999864 799999999999999999 55 7789999999999999888766 488899999
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccc---ccccccccccCCCCCCccccchhhhhhhccc
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPA---KKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 402 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~---~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt 402 (632)
+|++...++|.+|. |.|++.+..+++++++++.+..+ .+..+.. ...||..+. + +..+ .
T Consensus 196 VDvaytgSQKaL~a-P~GLsiisfS~ka~~~~~~rK~~-~~~~yFd~~~~~~~wgc~~------e----~~~y----h-- 257 (385)
T KOG2862|consen 196 VDVAYTGSQKALGA-PAGLSIISFSDKALEAIRDRKTK-PVSFYFDILRLGNFWGCDG------E----PRAY----H-- 257 (385)
T ss_pred ccEEEecchhhcCC-CCCcceeecCHHHHHHHhhccCC-ceEEEEeHHhhcchhccCC------c----cccc----c--
Confidence 99999999999987 99999999999998888665332 2222211 123442221 0 0111 1
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
-|+.+..+++|+ +||+++.+.|++++.+|++++++||+.+|.
T Consensus 258 --------------hT~pv~lly~Lr------------------------~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~ 299 (385)
T KOG2862|consen 258 --------------HTPPVQLLYSLR------------------------AALALIAEEGLENSWRRHREMSKWLKLSLE 299 (385)
T ss_pred --------------cCCcHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245566788898 999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcEEEECCCCCCCCCcEEE-EEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 483 KLQHPNTEGNALVKIYGPKIRFDRGPALA-FNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~~~rg~iva-Fnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
++ |..++. - +++.|.+.|+ ..++. | +|+..|.. +..++++.++.|.
T Consensus 300 ~~------GLq~fv---~-~e~~rlptvttv~vp~--g--vDw~dVv~~~~~~~~vei~ggl------------------ 347 (385)
T KOG2862|consen 300 AL------GLQLFV---V-DEELRLPTVTTVKVPY--G--VDWKDVVAYAMSHYVVEIGGGL------------------ 347 (385)
T ss_pred Hh------Ccccee---c-ChhhccCcceeeecCC--C--CCHHHHHHHHHHhcCEEecccc------------------
Confidence 98 655442 2 2356666554 34443 2 67777765 4566688887652
Q ss_pred hhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.....++||.+ |-..|-|-|++.++.|+.-|..
T Consensus 348 ------------------g~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 348 ------------------GPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ------------------CCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 112335899985 8888999999999988876543
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=229.61 Aligned_cols=368 Identities=11% Similarity=-0.001 Sum_probs=230.1
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
.+.+.|..+..+..++.++++............| |+.+. . -| ..++.+++++.+++++|++
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~----------~----~g--~~~~~~~~~~~la~~~g~~ 80 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTP---YQPEI----------S----QG--RLQALFELQTMLCELTGMD 80 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccccCcccCCC---CChhh----------h----hh--HHHHHHHHHHHHHHHHCCC
Confidence 3458888888887777777664332210000000 00000 0 01 2367789999999999997
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCC--CCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMS--VKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~--gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
++ .++|+.|++.+.+.++.+....+ ||+|++.. .|++ ....+....++.|++++.++.+ +.+.++.+++++++
T Consensus 81 ~~--~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~-~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i 156 (398)
T cd00613 81 VA--NASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPT-NPAVARTRGEPLGIEVVEVPSD-EGGTVDLEALKEEV 156 (398)
T ss_pred cc--ceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcc-hHHHHHHhcccCCcEEEEeccC-CCCCcCHHHHHHhc
Confidence 65 57788877766555544443444 89977654 5655 3333333445667999999886 45578999999988
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccch-H-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCC
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPY-L-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl-~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
.++ ++++++++.+ .+|...|+ + |.++|+++|+++++|++|..+. ...+...+++|++++|+||+++ |
T Consensus 157 ~~~------t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~--~~~~~~~~~~d~~~~s~~K~~~--p 225 (398)
T cd00613 157 SEE------VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLT--GLKPPGEYGADIVVGNLQKTGV--P 225 (398)
T ss_pred CCC------eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEecccccc--CCCChHHcCCCEEEeeccccCC--C
Confidence 654 4889999875 79999996 8 9999999999999999987655 3555667889999999999873 3
Q ss_pred -----CceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhh
Q 006746 342 -----SGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415 (632)
Q Consensus 342 -----~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~ 415 (632)
.|.|+++++++.++.+.+...| +... . ... .|.. .+.......+ ++.++.+..+...
T Consensus 226 ~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~------~~~~~~~~~r---~e~~~~~~~~~~~----- 288 (398)
T cd00613 226 HGGGGPGAGFFAVKKELVRFLPGRLVGVTKDA-E-GNR-AFRL------ALQTREQHIR---REKATSNICTGQA----- 288 (398)
T ss_pred CCCCCCceeEEEEhhhhHhhCCCCeecccccc-C-CCc-ceEE------ecccchhhcc---cccccccceecHH-----
Confidence 4789999999887766554333 1100 0 000 0100 0000000001 1234433221110
Q ss_pred cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE
Q 006746 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV 495 (632)
Q Consensus 416 ~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v 495 (632)
...+.. ..+++.+...|++++.+|.+.+.++|+++|.++ + ..
T Consensus 289 ------~~~~~a------------------------~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------~--~~ 330 (398)
T cd00613 289 ------LLALMA------------------------AMYIVYLGPEGLKEIAERAHLNANYLAKRLKEV------G--GV 330 (398)
T ss_pred ------HHHHHH------------------------HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhc------C--Cc
Confidence 111111 144555556688999999999999999999987 2 22
Q ss_pred EEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccc
Q 006746 496 KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 575 (632)
Q Consensus 496 ~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 575 (632)
.+ +. ..+.+++.|.+....| .+...+.+.+.++||.+..-
T Consensus 331 ~~--~~--~~~~~~v~~~~~~~~~--~~~~~~~~~L~~~gi~~~~~---------------------------------- 370 (398)
T cd00613 331 LP--FN--GPFFHEFVLRLPPLYG--IRAEDLAKALIDGGFHAPTM---------------------------------- 370 (398)
T ss_pred cc--CC--CCeeEEEEEEcCCcch--HHHHHHHHhhhhcCcccccc----------------------------------
Confidence 21 21 2345677777653111 23455555555667754210
Q ss_pred cccCCCCCcEEEEccCCCCCHHHHHHHHHHH
Q 006746 576 KDKANLGITVVTASLGYLANFEDVYRLWAFV 606 (632)
Q Consensus 576 ~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l 606 (632)
...+.+.||+|+++|||.|||+++++.|
T Consensus 371 ---~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 371 ---YLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ---ccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 0013469999999999999999999764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=224.22 Aligned_cols=333 Identities=12% Similarity=0.089 Sum_probs=218.0
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
...=|||++....+.+.+++++..+..+. |. +. .+...++..+| ..+.++++|++|++++|++
T Consensus 10 ~s~~YL~~~~~~~~~~~~~~~~~~~~~~~----p~--~~---------~~~~gs~~~~g--~~~~~~~~e~~la~~~~~~ 72 (370)
T PRK05937 10 VTNDFLGFSRSDTLVHEVEKRYRLYCRQF----PH--AQ---------LGYGGSRAILG--PSSLLDDLEHKIAHFHGAP 72 (370)
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhcccc----CC--CC---------CCCCCcCcccC--ChHHHHHHHHHHHHHhCCC
Confidence 44569999999999999999988765322 10 00 01111121111 3578999999999999995
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhc
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
. .++|+++.+..+ .++..+ .++|+.|++...+|......+.. ..|..+. + + ..|+++|+++|+..
T Consensus 73 ~---~l~~~sG~~a~~-~~~~~~-~~~~d~ii~d~~~H~sv~~~~~~---~~~~~~~---~--~--~~d~~~l~~~l~~~ 137 (370)
T PRK05937 73 E---AFIVPSGYMANL-GLCAHL-SSVTDYVLWDEQVHISVVYSLSV---ISGWHQS---F--R--HNDLDHLESLLESC 137 (370)
T ss_pred e---EEEECChHHHHH-HHHHHh-CCCCCEEEEEhhhhHHHHHHHHH---cCCceEE---e--c--CCCHHHHHHHHHhh
Confidence 2 588887775444 344444 35677777755444323333322 1243332 2 2 35789999998753
Q ss_pred CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC----CCC---CcEEEEccccccC
Q 006746 267 GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS----LVR---PDFLICSFYQIFG 338 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls----~~~---~Df~~~S~hK~~G 338 (632)
.+..+.+.++++++++|.+|.+.|++ |.++|+++|++++||++|++|+ ...+.. .++ .|.++.+++|++|
T Consensus 138 ~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~--~g~~g~g~~~~~~~~~~~~~~~tlsK~~g 215 (370)
T PRK05937 138 RQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGI--FGDDGKGFCHSLGYENFYAVLVTYSKALG 215 (370)
T ss_pred hccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccc--cCCCCCchHHhhCCCCCcEEEEechhhhh
Confidence 21112457888999999999999999 9999999999999999999875 344432 233 2356788899999
Q ss_pred CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCC
Q 006746 339 ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 418 (632)
Q Consensus 339 ~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt 418 (632)
|.|.|+|+.++ ....+.... . . + .+ .++
T Consensus 216 --~~G~~vl~~~~-~~~~~~~~~-~----------~-~-----------------~~--------------------s~~ 243 (370)
T PRK05937 216 --SMGAALLSSSE-VKQDLMLNS-P----------P-L-----------------RY--------------------STG 243 (370)
T ss_pred --cCceEEEcCHH-HHHHHHHhC-C----------C-C-----------------ee--------------------cCC
Confidence 88999988754 222111100 0 0 0 00 111
Q ss_pred cccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEE
Q 006746 419 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 498 (632)
Q Consensus 419 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iy 498 (632)
.+.+.+.++. .+++++.+.| +.+.+|++.|.+++.+.|... + +
T Consensus 244 ~~~~~~~a~~------------------------aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~------~-~----- 286 (370)
T PRK05937 244 LPPHLLISIQ------------------------VAYDFLSQEG-ELARKQLFRLKEYFAQKFSSA------A-P----- 286 (370)
T ss_pred CCHHHHHHHH------------------------HHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCC------C-C-----
Confidence 2333455555 8999998877 667889999999998877432 1 1
Q ss_pred CCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccccc
Q 006746 499 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 578 (632)
Q Consensus 499 gp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 578 (632)
+.++.|.+.+ +....+.+.+.++||.++. +|.+
T Consensus 287 --------~~~~~i~~~~-----~~~~~~~~~L~~~gi~v~~--~~~~-------------------------------- 319 (370)
T PRK05937 287 --------GCVQPIFLPG-----ISEQELYSKLVETGIRVGV--VCFP-------------------------------- 319 (370)
T ss_pred --------CCEEEEEeCC-----hhHHHHHHHHHHCCeeEEe--eCCC--------------------------------
Confidence 1233455554 3556777778888998863 3321
Q ss_pred CCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 579 ANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 579 ~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|+|++||.|||++|++.|+++++.
T Consensus 320 ---~~~~iRis~~~~~t~edid~l~~~L~~~~~~ 350 (370)
T PRK05937 320 ---TGPFLRVNLHAFNTEDEVDILVSVLATYLEK 350 (370)
T ss_pred ---CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 1358999999999999999999999987643
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=207.11 Aligned_cols=383 Identities=15% Similarity=0.156 Sum_probs=269.3
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
++.+||=-.+.||+|++..+.+...++.+. ++..| +.......+- ..-+-+-..++.++||.
T Consensus 66 ~~~iYlcGNSLGLmPK~t~~~~~~eLDkWa--------k~av~------gH~~GkvPW~----~~De~il~l~~~iVGA~ 127 (465)
T KOG3846|consen 66 KPVIYLCGNSLGLMPKSTRNSINAELDKWA--------KCAVE------GHFKGKVPWV----SIDEPILPLLAPIVGAQ 127 (465)
T ss_pred CCeEEEeccccccCchhhHhHHHHHHHHHH--------hhhhh------ccccccccee----ecchhhhhhhhhhccCC
Confidence 568999999999999999988776554331 11111 1111111110 11235677889999999
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCC---eEEEe-ccccchhhHHHHHHHHhcCCEEE----EEeccCCccccCHHH
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVK---NLLTV-YDYESEAVEAMIRTSEKRGARVM----SAEFSWPRLRINSEK 258 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd---~ilt~-~d~~s~~v~~~~~~a~~~G~~v~----~v~~~~~~~~i~~~~ 258 (632)
++ +|...++-|..++.+.-+| ++|.. +||+. -.++|.-. .+..-++-+|..+. .+........+..++
T Consensus 128 e~--EvavmNsLTvNlh~Ll~sF-yKPTekR~KILlE~kaFPSDhY-AiesQ~~lhG~~~e~sm~~iePREGEetlRteD 203 (465)
T KOG3846|consen 128 EN--EVAVMNSLTVNLHSLLISF-YKPTEKRFKILLEKKAFPSDHY-AIESQCKLHGISPENSMIQIEPREGEETLRTED 203 (465)
T ss_pred ch--hhhhHhhhhhHHHHHHHHh-cCCcchhhhhhhccCCCCchHH-HHHhhhhhcCCChHHheEEecccccccchhHHH
Confidence 77 6888899999999999998 66544 36543 34555322 33334466776542 233222444577899
Q ss_pred HHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccc
Q 006746 259 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF 337 (632)
Q Consensus 259 l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~ 337 (632)
|.+.|.++. ....||+|+.+...||..+++. |...-|..|++|-.|-|+++|. .+|-|+.|++||.+..+||.+
T Consensus 204 ILd~IEkng---DeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgN--VpL~LHdWgVDFACWCSYKYl 278 (465)
T KOG3846|consen 204 ILDTIEKNG---DEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGN--VPLQLHDWGVDFACWCSYKYL 278 (465)
T ss_pred HHHHHHhcC---CeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcC--CceEEeecCCceEEEeeeccc
Confidence 999998653 5689999999999999999999 8866677899999999999997 699999999999999999954
Q ss_pred CCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcC
Q 006746 338 GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG 417 (632)
Q Consensus 338 G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~G 417 (632)
..+|.|+|.|+|..+......|...| ||..+ .+.+|.++. ..+...|... .|..
T Consensus 279 naGaGgIgGlFvHekh~~~~~prl~G-----------Wwgh~--~s~RF~Mdn----vl~lipGa~G---------fRiS 332 (465)
T KOG3846|consen 279 NAGAGGIGGLFVHEKHTKESLPRLAG-----------WWGHD--PSKRFQMDN----VLELIPGALG---------FRIS 332 (465)
T ss_pred ccCCCccceeeeehhhhcchhhHHhh-----------hccCC--cchhhhhcc----ccccCccccc---------cccC
Confidence 33499999999999887666665443 44322 222333221 0011122222 2566
Q ss_pred CcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCC---CCCc
Q 006746 418 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE---GNAL 494 (632)
Q Consensus 418 t~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~---G~p~ 494 (632)
+|.+-...+|. .+|+..++..|+++.+|...|+.||..-++..+..++. -.+.
T Consensus 333 NPpi~~v~al~------------------------~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~ 388 (465)
T KOG3846|consen 333 NPPIIDVVALR------------------------SSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLF 388 (465)
T ss_pred CCcHhHHHHHH------------------------hhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhccee
Confidence 77777788887 89999999999999999999999998887776544322 3467
Q ss_pred EEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccc
Q 006746 495 VKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNN 574 (632)
Q Consensus 495 v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 574 (632)
+.|..|..-.+||--+++.+..+ .+...|.| .++|+..
T Consensus 389 ~~IiTP~~~~erGcQLsl~Fssp-----~~~vfqeL-~krGv~~------------------------------------ 426 (465)
T KOG3846|consen 389 FTIITPTSTDERGCQLSLYFSSP-----TPKVFQEL-HKRGVIG------------------------------------ 426 (465)
T ss_pred EEEeCCcccccccceEEEEeCCC-----chHHHHHH-HHcCeec------------------------------------
Confidence 89999987678898888776542 23334444 3444432
Q ss_pred ccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 575 RKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 575 ~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+.+.+||+.+ +.||||.|||+++..|.+.+|.
T Consensus 427 ----DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~ 461 (465)
T KOG3846|consen 427 ----DKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDK 461 (465)
T ss_pred ----cccCCCceEeecchhhccHHHHHHHHHHHHHHHHH
Confidence 234567999997 8999999999999999998875
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=225.75 Aligned_cols=287 Identities=14% Similarity=0.081 Sum_probs=208.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--C-C--------CCC--eEEEec-cccchhhHHHHH
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--F-M--------SVK--NLLTVY-DYESEAVEAMIR 233 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--~-~--------~gd--~ilt~~-d~~s~~v~~~~~ 233 (632)
..++++++++.+++++|++..+.+++||+|+|+|+.+++.++. + . +++ .|+++. .|.+ + ..
T Consensus 36 ~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~--~---~~ 110 (345)
T cd06450 36 ATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS--V---EK 110 (345)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH--H---HH
Confidence 4578889999999999997333479999999999999887762 1 1 233 455554 5543 2 23
Q ss_pred HHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC
Q 006746 234 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 234 ~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~ 312 (632)
.++..|++++.++.+ +++.+++++|+++|.+......+++++++++.+|.||...|++ |+++|+++|+++++|+++..
T Consensus 111 ~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 111 AAAYLDVKVRLVPVD-EDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred HHHHHhcCeEEeeeC-CCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 345569999999987 5568999999999976211112458899999999999999999 99999999999999999887
Q ss_pred CCCCCCCCC------CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCC
Q 006746 313 PKDMDSFGL------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 313 g~~m~~ldl------s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
+. .+++. ...++|++++|+||+++. |.|+|+++++ .. ..|
T Consensus 190 ~~--~~~~~~~~~~~~~~~~d~~~~s~~K~l~~-p~g~g~~~~~----------~~-----------~~~---------- 235 (345)
T cd06450 190 FL--LPFPEPRHLDFGIERVDSISVDPHKYGLV-PLGCSAVLVR----------AL-----------KLW---------- 235 (345)
T ss_pred HH--hhChhhHHHhcCccccCEEEEchhHhhCC-CcchHHHHHH----------HH-----------HHH----------
Confidence 65 23221 123789999999997664 8899999887 00 000
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
.+++.+...|++.+
T Consensus 236 ------------------------------------------------------------------~~l~~l~~~g~~~~ 249 (345)
T cd06450 236 ------------------------------------------------------------------ATLRRFGRDGYGEH 249 (345)
T ss_pred ------------------------------------------------------------------HHHHHHhHHHHHHH
Confidence 45566666789999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
.+|...+++++.+.|.++ +.++++++. +.++++|.+.+.....++...+.+.+.++|+.+..+..
T Consensus 250 ~~~~~~~~~~l~~~L~~~--------~~~~~~~~~----~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~--- 314 (345)
T cd06450 250 IDRIVDLAKYLAELIRAD--------PGFELLGEP----NLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATT--- 314 (345)
T ss_pred HHHHHHHHHHHHHHHhcC--------CCeEEecCC----ceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeE---
Confidence 999999999999999987 567887653 47899998865200013445565555566554432210
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCC-CCHHHHHHHHHHHHH
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQ 608 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~-~t~eDV~rlv~~l~~ 608 (632)
....+++|+|++.+ ||.+||++|++.|++
T Consensus 315 ---------------------------------~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 315 ---------------------------------LGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred ---------------------------------ECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 00235899999986 599999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=211.17 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=162.6
Q ss_pred CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc-ccccccchhHHHHHHHHHHHHHcCCCCCCccEEEe
Q 006746 117 IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNISENDYGMVFT 195 (632)
Q Consensus 117 ~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s-~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft 195 (632)
.+++...+++++..|... ++|+++ ....+......+.+.++++++++|+ + .+++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~--~i~~~ 65 (361)
T cd06452 10 GGRLTPEARKALIEWGDG--------------------YSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--D--EARVT 65 (361)
T ss_pred CCCCCHHHHHHHHHHhcc--------------------cCCccccccccccccCchHHHHHHHHHHHcCC--c--eEEEe
Confidence 457888888887775421 134432 1112222345788999999999999 2 58999
Q ss_pred CCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCC-ccccCHHHHHHHHHhcCcC-CCc
Q 006746 196 ANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKK-KKQ 272 (632)
Q Consensus 196 ~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~-~~~i~~~~l~~~i~~~~~~-~~~ 272 (632)
+|+|+|+.+++.++ .++||+|++. ..|.+. ...++..|++++.++.++. ++.++++++++++.+..+. .++
T Consensus 66 ~g~t~al~~~l~~~-~~~gd~Vl~~~~~~~~~-----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 139 (361)
T cd06452 66 PGAREGKFAVMHSL-CEKGDWVVVDGLAHYTS-----YVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKP 139 (361)
T ss_pred CCHHHHHHHHHHHh-cCCCCEEEEcCCcchHH-----HHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCC
Confidence 99999999999998 7899998765 566652 2346778999999998742 2478999999998742110 124
Q ss_pred eeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeC
Q 006746 273 RGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 273 ~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
++++++++.+|.||...|++ |+++|+++|+++++|+++..|. .+++...++.|++++|+||++|. |.++|++++++
T Consensus 140 ~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~--~~~~~~~~~~d~~~~s~~K~l~~-~~~~G~l~~~~ 216 (361)
T cd06452 140 PALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR--MPVSGKELGADFIVGSGHKSMAA-SAPIGVLATTE 216 (361)
T ss_pred ceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCC--cCCCHHHcCCCEEEecCCccccC-CCCeEEEEECH
Confidence 68999999999999999999 9999999999999999999876 46777778899999999998875 77999999998
Q ss_pred CCccccC
Q 006746 352 STVPILV 358 (632)
Q Consensus 352 ~~~~~L~ 358 (632)
+.++.+.
T Consensus 217 ~~~~~l~ 223 (361)
T cd06452 217 EWADIVF 223 (361)
T ss_pred HHHHHHh
Confidence 8776653
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=214.28 Aligned_cols=219 Identities=14% Similarity=0.102 Sum_probs=172.0
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
+...||=|--..-+.+++++++..++.+ ..+||.+.+.+|..+.++++++++.++++||++
T Consensus 22 ~~~~~~gy~~~~~~~~~~~~~~~~~~~~-------------------~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~ 82 (374)
T PLN03032 22 KSSVHFGYPYNLDFDYGELSQLMKYSIN-------------------NLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 82 (374)
T ss_pred hhhhccCCCchhccChHHHHHHHHhccc-------------------CCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 3455666666666777788887765432 127888877788888999999999999999999
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
++++.-+||+++|+|..+...+.. ..++..|+++ .+|+| + ...++..|.+++.||++ +++.+|+++|+++|+
T Consensus 83 ~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~S--v---~kaa~~lg~~~~~V~~d-~~g~id~~~L~~~i~ 156 (374)
T PLN03032 83 KDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYS--V---FKAARMYRMEAVKVPTL-PSGEIDYDDLERALA 156 (374)
T ss_pred CccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeH--H---HHHHHHcCCCCeEeeeC-CCCcCcHHHHHHHHH
Confidence 875445999999999988765532 1234466554 56765 2 23456678889999998 789999999999998
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCC-----cEEEEeccccCCCCCCC-------CCCCCCCCcEEEE
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEND-----WHILIDACALGPKDMDS-------FGLSLVRPDFLIC 331 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g-----~~vlvDaaq~~g~~m~~-------ldls~~~~Df~~~ 331 (632)
+++ ..+.++++++.++.||.+.|++ |+++|+++| ++++||||+.++. .+ +|+. .++|.+++
T Consensus 157 ~~~---~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~--~p~~~~~~~~~~~-~~vDSis~ 230 (374)
T PLN03032 157 KNR---DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLM--MPFVSRAPEVTFR-KPIGSVSV 230 (374)
T ss_pred HcC---CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhh--hhccCCCcccCCC-cCCcEEEE
Confidence 743 2467999999999999999999 999999986 5899999998865 33 3554 47999999
Q ss_pred ccccccCCCCCceEEEEEeCCCcccc
Q 006746 332 SFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 332 S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
|+||++|. |.|+|+|++|++.++.+
T Consensus 231 s~HK~~g~-P~g~G~ll~r~~~~~~~ 255 (374)
T PLN03032 231 SGHKFLGC-PMPCGVALTRKKHVKAL 255 (374)
T ss_pred CcccccCC-CcCeEEEEEEchhhHhh
Confidence 99999998 99999999998765443
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=216.05 Aligned_cols=324 Identities=13% Similarity=0.109 Sum_probs=226.2
Q ss_pred ecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCccE
Q 006746 113 DYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 113 D~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~v 192 (632)
=+-|.++.|+.+++++..+... | . ...++++++++.+++++|++ .+
T Consensus 18 t~~g~s~~~~~v~~a~~~~~~~------------------~-----------~-~~~~~~~~~~~~~a~~~g~~----~~ 63 (363)
T TIGR01437 18 TILGVSTVSDEVADAQKRGAQN------------------Y-----------F-EIKELVNKTGEYIANLLGVE----DA 63 (363)
T ss_pred ecCCCCCCCHHHHHHHHHHHhc------------------C-----------C-CHHHHHHHHHHHHHHhhCCC----eE
Confidence 4556778999999998764311 0 0 13477899999999999985 47
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCC---------------eEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHH
Q 006746 193 VFTANRTSAFKLLAESYPFMSVK---------------NLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSE 257 (632)
Q Consensus 193 vft~naT~al~lv~~sl~~~~gd---------------~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~ 257 (632)
++|+|+|+|+.+++.++ +++|| +|+++..|..+............|+++++++.+ +.++++
T Consensus 64 ~~~~g~t~al~~al~al-~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~---~~~d~~ 139 (363)
T TIGR01437 64 VIVSSASAGIAQSVAAV-ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA---NECSAE 139 (363)
T ss_pred EEEcCHHHHHHHHHHHH-hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC---CCCCHH
Confidence 99999999999999998 77887 766655444322111133456689999999874 358999
Q ss_pred HHHHHHHhcCcCCCceeEEE-EeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccc
Q 006746 258 KLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQ 335 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~-~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK 335 (632)
+++++|+++| ++++ ++..++++|...|++ |+++||++|+++++|++|.... . ..-.+++|++++|+||
T Consensus 140 ~le~ai~~~t------~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~--~--~~~~~g~D~~~~S~~K 209 (363)
T TIGR01437 140 QLEAAITEKT------AAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL--Q--KYYRLGADLVIYSGAK 209 (363)
T ss_pred HHHHhcChhc------eEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch--H--HHHHcCCCEEEEeCCc
Confidence 9999998765 5444 555678999999999 9999999999999999997422 1 0113468999999999
Q ss_pred ccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhh
Q 006746 336 IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415 (632)
Q Consensus 336 ~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~ 415 (632)
+++. |+ .|+|+.+++.++.+.+...| ... .+ +.++
T Consensus 210 ~l~g-p~-~G~l~~~~~~i~~~~~~~~~-~~~--------------------------~~---~~~~------------- 244 (363)
T TIGR01437 210 AIEG-PT-SGLVLGKKKYIEWVKLQSKG-IGR--------------------------AM---KVGK------------- 244 (363)
T ss_pred ccCC-Cc-eEEEEEcHHHHHHHHhccCC-Ccc--------------------------ee---ccCH-------------
Confidence 5543 87 78888877766555432222 100 00 0111
Q ss_pred cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE
Q 006746 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV 495 (632)
Q Consensus 416 ~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v 495 (632)
..+.++. ++++.+.+.|.+.+.++.+.+. ++++.|.++ |.+
T Consensus 245 ------~~~~gl~------------------------aAl~~~~~~~~~~~~~~~~~~~-~l~~~L~~i--------~g~ 285 (363)
T TIGR01437 245 ------ENILGLT------------------------AALEQYLSTGKESGAEMVAKLT-PFIEALNTL--------KGV 285 (363)
T ss_pred ------HHHHHHH------------------------HHHHHHHccCcccHHHHHHHHH-HHHHHHhcC--------CCe
Confidence 1135555 8899888888888888887644 699999987 678
Q ss_pred EEECCCCCCCC---CcEEEEEEccCCCCccCHHHHHHHHHhCC--cEEccCccCChHHHhHHHHhhhhhhhhhhcccccc
Q 006746 496 KIYGPKIRFDR---GPALAFNVFDWKREKIEPVLVQKLADREN--ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 570 (632)
Q Consensus 496 ~Iygp~~~~~r---g~ivaFnv~~~~G~~i~~~~V~kla~~~g--I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 570 (632)
+++.+...... ...|+|+... .| +++..+.+.+.+.| |.+|. +
T Consensus 286 ~~~~~~~~~~~~~~~~~v~~~~~~-~g--~~~~~l~~~L~~~~~~I~~r~-----------~------------------ 333 (363)
T TIGR01437 286 SASIVQDEAGRDIARAEIRFDESE-LG--MTAADVVQALRQGEPAIYTRG-----------Y------------------ 333 (363)
T ss_pred EEEEecCCCCCcCceEEEEEeccC-CC--CCHHHHHHHHhcCCCCEEEee-----------e------------------
Confidence 88854321111 2446666532 12 78888888887666 66653 0
Q ss_pred ccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 571 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 571 ~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
....+.||+++.. +|++|++++++.|++++
T Consensus 334 ---------~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 334 ---------KANEGIIEIDPRS-VTGGQLDIIVERIREIV 363 (363)
T ss_pred ---------eecCCeEEEEeec-CCHHHHHHHHHHHHHhC
Confidence 1235689999886 55999999999998864
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=237.12 Aligned_cols=358 Identities=14% Similarity=0.086 Sum_probs=239.6
Q ss_pred ccCcCCCCceEeecCCCCCCCH---HHH-HHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHH
Q 006746 101 YYQLSLSNHTCLDYFGIGLFSY---NQL-HKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMK 176 (632)
Q Consensus 101 f~~L~~~~~vyLD~ag~gl~~~---~~~-~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R 176 (632)
|..|..+|++|-.+.|.|.++. +++ +.+... |.+| + +|+.=-| ...+|. -+.+-+.+
T Consensus 67 ~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~--------~~~~------t-~ytPyQ~--EisQG~--Leal~~~Q 127 (954)
T PRK05367 67 LRAIASKNKVFRSYIGQGYYGTHTPPVILRNILEN--------PAWY------T-AYTPYQP--EISQGR--LEALLNFQ 127 (954)
T ss_pred HHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhC--------cchh------h-ccCCCCh--HHHHHH--HHHHHHHH
Confidence 4446556777777788887765 555 433331 2111 1 1111111 122232 36777999
Q ss_pred HHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC--CeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccc
Q 006746 177 KRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV--KNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLR 253 (632)
Q Consensus 177 ~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g--d~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~ 253 (632)
+.+++++|+++. ++.++.++|++.+.++.+++++++ ++|++ ..+|+++... +...++..|++|+.++.+ .+
T Consensus 128 t~la~LtG~~~a--naSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v-~~t~a~~~G~ev~~~~~~-~d-- 201 (954)
T PRK05367 128 TMVADLTGLEIA--NASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDV-LRTRAEPLGIEVVVGDAA-KA-- 201 (954)
T ss_pred HHHHHHHCCChh--hccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHH-HHHHHHhCCCEEEEecCc-cC--
Confidence 999999999976 689999999999999999988875 78765 5688875444 467788999999999874 21
Q ss_pred cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 006746 254 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS 332 (632)
Q Consensus 254 i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S 332 (632)
++ .+ . -..++.+..|.+|.+.|++ |+++||++|++++||+.+.+.. ...+..++++||++++
T Consensus 202 ~~--------~~------~-~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~--~l~~pge~GaDi~vgs 264 (954)
T PRK05367 202 LD--------HD------D-VFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALT--LLTPPGEMGADIAVGS 264 (954)
T ss_pred CC--------cc------c-EEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhcc--CCCChhhcCCCEEEee
Confidence 11 11 1 2446778889999999999 9999999999999999664433 1235678999999999
Q ss_pred cccc-----cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCc
Q 006746 333 FYQI-----FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 407 (632)
Q Consensus 333 ~hK~-----~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~ 407 (632)
+||| ||. | |.|+|+||++....+.+...|=.++. .....+ .-.+.+.+..-+ +|.
T Consensus 265 ~qkfg~P~g~GG-P-~aGflavr~~~~r~lpgrivG~s~d~--~g~~~~------~lalqtReqhiR---rek------- 324 (954)
T PRK05367 265 AQRFGVPMGFGG-P-HAAYFAVRDAYKRSMPGRIVGVSVDA--AGNPAL------RLALQTREQHIR---REK------- 324 (954)
T ss_pred CcccCCCCCCCC-C-CEEEEEECHHHHhhCCCCeeeeeccc--CCCccc------cccccccccccc---ccc-------
Confidence 9998 775 5 79999999998777876655400000 000000 000111111011 233
Q ss_pred cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCC
Q 006746 408 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP 487 (632)
Q Consensus 408 ~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~ 487 (632)
||.|+...++|. ..+...-+.++...|+++|.+|+..|+++|.++|.+.
T Consensus 325 ---------aTsNict~qaL~-------------------a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~--- 373 (954)
T PRK05367 325 ---------ATSNICTAQVLL-------------------AVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL--- 373 (954)
T ss_pred ---------cccccchHHHHH-------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc---
Confidence 444554444432 0000012355677899999999999999999999775
Q ss_pred CCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccc
Q 006746 488 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA 567 (632)
Q Consensus 488 ~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 567 (632)
| +++..+ ....+++|.+. .++..|.+.+.++||.++.
T Consensus 374 ---G---~~~~~~----~~f~~~~~~~~------~~~~~i~~~l~~~gi~~~~--------------------------- 410 (954)
T PRK05367 374 ---G---LEVVHD----SFFDTLTVEVG------GDAAAVLARALAAGINLRR--------------------------- 410 (954)
T ss_pred ---C---cccCCC----CCCCeEEEeCC------CCHHHHHHHHHHCCceecc---------------------------
Confidence 4 333333 24468888753 2567777777778988741
Q ss_pred cccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 568 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
...+.||+|++.+||.+||++|++.++
T Consensus 411 -------------~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 411 -------------VDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -------------ccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 113579999999999999999999997
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=207.09 Aligned_cols=211 Identities=11% Similarity=0.078 Sum_probs=159.8
Q ss_pred CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeC
Q 006746 117 IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTA 196 (632)
Q Consensus 117 ~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~ 196 (632)
.|.++..+.++..++..... .+++. .+++. .+ ....+.+.++.+++++|+++ +++++
T Consensus 17 ~g~~~~~~~~a~~~~~~~~~--------~~~~~-----~g~~~----~~--~~~~~~~~~e~lA~~~g~~~----~~i~~ 73 (370)
T TIGR02539 17 GGVLTEAARKALVEFGDGYS--------VCDFC-----GGRLD----QI--TKPPIHDFLEDLAEFLGMDE----ARVTH 73 (370)
T ss_pred CCCCcHHHHHHHHHHhhccc--------ccccc-----ccccc----cc--cchHHHHHHHHHHHHhCCCc----eEEEC
Confidence 67888999998877543110 00000 01111 01 13466788999999999963 55689
Q ss_pred CHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC-CccccCHHHHHHHHHhcCcC-CCce
Q 006746 197 NRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW-PRLRINSEKLRKMVVSKGKK-KKQR 273 (632)
Q Consensus 197 naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~-~~~~i~~~~l~~~i~~~~~~-~~~~ 273 (632)
++++++..++.++ +++||+|+++ ..|++. + ..++..|++++.++.+. +++.+|+++|++.|.+.+.. ..++
T Consensus 74 g~~~a~~~~~~~l-~~~gd~Vl~~~~~h~s~-~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 147 (370)
T TIGR02539 74 GAREGKFAVMHAL-CKEGDWVVLDGLAHYTS-Y----VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPP 147 (370)
T ss_pred ChHHHHHHHHHHh-hCCCCEEEECCcccHHH-H----HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCc
Confidence 9999999999999 6889998774 566652 2 23577899999998752 34678999999999752211 1246
Q ss_pred eEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 274 GLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 274 ~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
+++++++.+|+||...|++ |+++|+++|++++||.++..|. .+++...+++|+++.|+||++|. +.++|+++++++
T Consensus 148 ~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~--~~~~~~~~~~di~v~s~sK~~~~-~g~~G~l~~~~~ 224 (370)
T TIGR02539 148 VLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGR--MPVSAKEIGADFIVGSGHKSMAA-SGPCGVLGMSEE 224 (370)
T ss_pred EEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCC--cCCCHHHcCCCEEEeeCcccccC-CCCEEEEEECHH
Confidence 8999999999999999999 9999999999999999999885 46666667899999999999884 567999999998
Q ss_pred CccccCC
Q 006746 353 TVPILVD 359 (632)
Q Consensus 353 ~~~~L~~ 359 (632)
.++.+..
T Consensus 225 ~i~~l~~ 231 (370)
T TIGR02539 225 WEDIVLR 231 (370)
T ss_pred HHhhhcc
Confidence 8877654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=217.59 Aligned_cols=319 Identities=13% Similarity=0.056 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHH--HhhCCCCCCC----eEEE-eccccchhhHHHHHHHHhcCCE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLL--AESYPFMSVK----NLLT-VYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv--~~sl~~~~gd----~ilt-~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
.+++.++++.+++++|.+.. .+.-++++++.+..+ +..+...+|+ +|++ ...|++. . ..++..|++
T Consensus 112 lel~~~~~~~la~l~G~~~~--~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~-~----~~~~~~G~~ 184 (481)
T PRK04366 112 LELMYELQEWLKEITGMDAV--TLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTN-P----ASAAMAGFK 184 (481)
T ss_pred HHHHHHHHHHHHHHhCCCce--EEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhH-H----HHHHHcCCE
Confidence 47888999999999999621 333334444444422 4434345555 7665 4566652 2 235678999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccc-cchH-HHHHHhhCCcEEEEeccccCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYL-WMRIAQENDWHILIDACALGPKDMDSF 319 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~-~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~l 319 (632)
++.++++ .++.+|.++|++++++++ +++++++. |.||.. .|++ |+++||++|++++||+||.++. +..+
T Consensus 185 vv~v~~~-~~~~~D~e~L~~~i~~~t------~~V~v~~P-n~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~-~g~~ 255 (481)
T PRK04366 185 VVEIPSN-EDGLVDLEALKAAVGEDT------AALMLTNP-NTLGLFERNILEIAEIVHEAGGLLYYDGANLNAI-LGKA 255 (481)
T ss_pred EEEeecC-CCCCcCHHHHHhhcccCC------eEEEEeCC-CCccccchHHHHHHHHHHHcCCEEEEEecChhhh-cccC
Confidence 9999997 567899999999997654 78888875 489987 5899 9999999999999999998663 1235
Q ss_pred CCCCCCCcEEEEccccccCCCC-----CceEEEEEeCCCccccCCCCCC--CceeecccccccccccccCCCCCCccccc
Q 006746 320 GLSLVRPDFLICSFYQIFGENP-----SGFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P-----~G~G~L~Vr~~~~~~L~~~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
+..++++|++++++||+||. | +|+|+++++++....+.+...| |. ... +. +.-.+.-
T Consensus 256 ~~~~~GaD~~~~~~hK~l~~-P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~-~~~------l~--------~~r~~~i 319 (481)
T PRK04366 256 RPGDMGFDVVHLNLHKTFST-PHGGGGPGSGPVGVKEELAPFLPVPVVEKDGD-RYR------LD--------YDRPKSI 319 (481)
T ss_pred CccccCCCEEEEechhhcCC-CCCCCCCCeeeeeehhhhHhhCCCCeeeccCC-cee------ec--------ccccccC
Confidence 66788999999999998764 4 4678999999888777655443 11 100 00 0000000
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC---HHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG---LTMISRR 469 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G---l~~I~~r 469 (632)
.++ +.. +.+. ..+. +++.++..+| +..+.++
T Consensus 320 ~r~---~a~----------------t~~~---l~~~------------------------~a~~~l~~~G~~Gl~~~a~~ 353 (481)
T PRK04366 320 GRV---RAF----------------YGNF---GVLV------------------------RAYAYIRSLGAEGLREVSED 353 (481)
T ss_pred CCc---ccc----------------cCch---HHHH------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 011 111 1111 1111 5666666665 5577788
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHH
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~ 549 (632)
...+++||+++|.++ . .+. +.. ......++.+.-+..+| ++...|.+.+.++||.++.-.
T Consensus 354 ~~~~a~~l~~~L~~~-~-------~~~-~~~--~~~~~~~~~~~~~~~~g--~~~~~v~~~L~~~Gi~~~~~~------- 413 (481)
T PRK04366 354 AVLNANYLKARLKDI-Y-------DLP-YDR--PCMHEFVLSGKKLKETG--VRTLDIAKRLLDYGFHPPTIY------- 413 (481)
T ss_pred HHHHHHHHHHHhHhh-C-------ccc-CCC--CeeEEEEEECccccccC--CCHHHHHHHHHHCCccCCccc-------
Confidence 899999999999986 1 121 211 11122333321011122 577788887778899865210
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
+ .....+.+|+|++.++|.+|||+|++.|+++.+..
T Consensus 414 --~--------------------------p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~ 449 (481)
T PRK04366 414 --F--------------------------PLIVPEALMIEPTETESKETLDAFIAAMKQIAEEA 449 (481)
T ss_pred --c--------------------------ccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 01124589999999999999999999999987654
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=211.72 Aligned_cols=327 Identities=12% Similarity=0.026 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+++.++.+++++|++ .+++|+|+|+|+.+++.++.+++||+|++ ...|++. ...++..|++++.++++
T Consensus 18 ~~~~~~~~~la~~~~~~----~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~-----~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 18 PKVREFEKAFAEYLGVK----YAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT-----ANAILLLGATPVFVDID 88 (352)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH-----HHHHHHcCCeEEEEecC
Confidence 45678999999999973 48889999999999999997789999765 4577652 22345689999999997
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC--CCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG--LSLVR 325 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld--ls~~~ 325 (632)
..++.+++++++++++++ ++++++++ ++|...|++ |.++|+++|+++++|++|+.|.. ..+ +. ..
T Consensus 89 ~~~~~~d~~~l~~~i~~~------~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~--~~~~~~~-~~ 156 (352)
T cd00616 89 PDTYNIDPELIEAAITPR------TKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGAT--YKGRKVG-TF 156 (352)
T ss_pred CCcCCcCHHHHHHhcCcC------CeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCe--ECCEEcc-cC
Confidence 446788999999988654 47887765 699999999 99999999999999999998862 111 11 12
Q ss_pred CcEEEEccc--cccCCCCCceEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccc
Q 006746 326 PDFLICSFY--QIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 402 (632)
Q Consensus 326 ~Df~~~S~h--K~~G~~P~G~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt 402 (632)
.|+.++|+| |+++. |. .|+++.++ ++++.+++...+|.... .+ .+ +..+
T Consensus 157 ~d~~~~S~~~~K~~~~-~~-gg~~~~~~~~~~~~~~~~~~~~~~~~------~~-----------------~~---~~~~ 208 (352)
T cd00616 157 GDAGAFSFHPTKNLTT-GE-GGAVVTNDEELAERARLLRNHGRDRD------RF-----------------KY---EHEI 208 (352)
T ss_pred cceeEEcCCCCCCCcc-cC-ceEEEECCHHHHHHHHHHHHcCCCCC------CC-----------------cc---ccce
Confidence 589999987 98863 33 35566654 55554443211111100 00 00 0001
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
..+.. .++ .+. .++......+++.+.+|.+.+.+++++.|.
T Consensus 209 ~~~~~------------~~~---~~~------------------------aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~ 249 (352)
T cd00616 209 LGYNY------------RLS---EIQ------------------------AAIGLAQLEKLDEIIARRREIAERYKELLA 249 (352)
T ss_pred eeecc------------CcC---HHH------------------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 11100 001 111 233333334678889999999999999998
Q ss_pred ccCCCCCCCCCcEEEECCCCC-CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhh
Q 006746 483 KLQHPNTEGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE 561 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~-~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~ 561 (632)
++ |.++++++... ....++++|.+.+..| +++..+.+.+.++||.+ +.+|.+........ ...
T Consensus 250 ~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~L~~~gI~~--~~~~~~~~~~~~~~----~~~ 313 (352)
T cd00616 250 DL--------PGIRLPDVPPGVKHSYHLYVIRLDPEAG--ESRDELIEALKEAGIET--RVHYPPLHHQPPYK----KLL 313 (352)
T ss_pred CC--------CCccCCCCCCCCceeeEEEEEEECCcCC--CCHHHHHHHHHHCCCCe--eeecCccccCHhhh----hcc
Confidence 87 66888876432 2356789998874212 67888888888889965 45666543322100 000
Q ss_pred hhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 562 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
.......++ ......+.||+|+|+++|.+||+++++.|+
T Consensus 314 ---~~~~~~~~~----a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 314 ---GYPPGDLPN----AEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred ---CCCcCCChH----HHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 000000000 001123699999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=219.28 Aligned_cols=327 Identities=13% Similarity=0.082 Sum_probs=217.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.+.+.++.+++++|++++ .+++|+|+|+++..+..++.+.+|++|++. .+|++ ....+..+++..|++++.++.
T Consensus 111 ~~~~~e~~~~la~l~g~~~~--~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~-~~~~~~~~~~~~G~~~~~v~~ 187 (447)
T PRK00451 111 LQAIFEYQTMICELTGMDVA--NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPE-YREVLKTYLKGQGIEVVEVPY 187 (447)
T ss_pred HHHHHHHHHHHHHHhCCCcc--eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHH-HHHHHHHHHHhCCcEEEEecC
Confidence 46667788899999999865 699999999999999988866789997654 56665 333344556778999999998
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEE--eccccCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILI--DACALGPKDMDSFGLSLV 324 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlv--Daaq~~g~~m~~ldls~~ 324 (632)
+ ++ .++.++|+++|+++ ++++++++. |.||...|++ |.++||++|+++++ |+.. .|. .. ...++
T Consensus 188 ~-~~-~~d~~~l~~~i~~~------t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~-~g~--~~-~~~~~ 254 (447)
T PRK00451 188 E-DG-VTDLEALEAAVDDD------TAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVS-LGL--LK-PPGEY 254 (447)
T ss_pred C-CC-CCCHHHHHHhcCCC------eEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHH-hcc--CC-CcccC
Confidence 7 45 79999999999764 489999987 8899999999 99999999999988 6553 332 11 12467
Q ss_pred CCcEEEEccccc-----cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 325 RPDFLICSFYQI-----FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 325 ~~Df~~~S~hK~-----~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
++|++++|+||| +|. | |+|+++++++.++.+.+...|.+..... ...|... +.... ....++
T Consensus 255 ~~D~~~~s~~k~~~~~~~~G-p-g~G~l~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~------~~~~~---~~~~~~ 321 (447)
T PRK00451 255 GADIVVGEGQPLGIPLSFGG-P-YLGFFATRKKLVRQMPGRLVGETVDADG--KRGFVLT------LQARE---QHIRRE 321 (447)
T ss_pred CCCEEEECCCcCCCCCCCCC-C-CchHHHhhHHHHhhCCCCEeeeecccCC--CeeeEee------ccccc---cccccc
Confidence 899999999996 553 5 8999999999888777665542211100 0000000 00000 000012
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.++.++.... .+.++. ...+|+++.+.|++.+.+|...++++|++
T Consensus 322 ~~~~~~~~~~-------------~~~~~a----------------------aa~~l~~~~~~g~~~~~~~~~~~~~~l~~ 366 (447)
T PRK00451 322 KATSNICTNQ-------------ALNALA----------------------AAIYMSLLGPEGLRELAEQNHQKAHYLAE 366 (447)
T ss_pred cccccccccH-------------HHHHHH----------------------HHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 2332222110 112121 01356666667999999999999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
+|.++ +.++++.. .....+++.+ + .+...+.+.+.++||..+.-. .+ .+
T Consensus 367 ~L~~~--------~g~~~~~~----~~~~~~~v~~-~-----~~~~~~~~~L~~~gi~~~~~~--~~----~~------- 415 (447)
T PRK00451 367 RLAEI--------GGVELFDG----PFFNEFVVRL-P-----KPAEEVNEALLEKGILGGYDL--GR----YY------- 415 (447)
T ss_pred HHhhc--------CCEEecCC----CeEEEEEEec-C-----CCHHHHHHHHHhcCCCCCccc--cc----cc-------
Confidence 99987 55777521 1111222332 1 244556655566777642100 00 00
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
... .+.+|+|+++++|.+||++|++.|++++
T Consensus 416 -------------------~~~-~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 416 -------------------PEL-GNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred -------------------CCc-CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 011 2589999999999999999999998764
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=201.59 Aligned_cols=296 Identities=15% Similarity=0.122 Sum_probs=199.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
...++++++.+++++|++ + .| ++.++|+++..+..++ +++||+|++. ..|++ + ...++..|++++.++.
T Consensus 45 ~~~~~~l~~~la~~~~~~-~--~i-v~~sg~~a~~~~~~~~-~~~gd~Vl~~~~~~~~--~---~~~~~~~g~~~~~~~~ 114 (349)
T cd06454 45 SDLHEELEEELAEFHGKE-A--AL-VFSSGYAANDGVLSTL-AGKGDLIISDSLNHAS--I---IDGIRLSGAKKRIFKH 114 (349)
T ss_pred chHHHHHHHHHHHHhCCC-C--EE-EeccHHHHHHHHHHHh-cCCCCEEEEehhhhHH--H---HHHHHHcCCceEEecC
Confidence 467789999999999985 2 34 4556678887777777 5889997764 45553 1 2335668999877642
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC------CCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD------MDSFG 320 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~------m~~ld 320 (632)
++.+++++++.+.. .+.+++++++++.+|.||...|++ |+++|+++|+++++|+++..|.- +..++
T Consensus 115 ------~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~ 187 (349)
T cd06454 115 ------NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFG 187 (349)
T ss_pred ------CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhc
Confidence 46788888887531 113468999999999999999999 99999999999999999876531 00133
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
....+.|+++.|+||++| +.| |+++.+++.++.+..... .| . ..
T Consensus 188 ~~~~~~~i~~~s~sK~~~--~~g-G~i~~~~~~~~~~~~~~~------------~~-----------------~----~~ 231 (349)
T cd06454 188 GLTDDVDIIMGTLGKAFG--AVG-GYIAGSKELIDYLRSYAR------------GF-----------------I----FS 231 (349)
T ss_pred cccccCcEEEeechhhhc--ccC-CEEECCHHHHHHHHHhch------------hh-----------------h----cc
Confidence 445688999999999999 556 777777665543322100 00 0 00
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
+ +.+.+.+.++. ++|+++.. .+.+.++.+.+.+++++.
T Consensus 232 ~----------------~~~~~~~~a~~------------------------~~l~~~~~--~~~~~~~~~~~~~~l~~~ 269 (349)
T cd06454 232 T----------------SLPPAVAAAAL------------------------AALEVLQG--GPERRERLQENVRYLRRG 269 (349)
T ss_pred C----------------CCCHHHHHHHH------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 1 11122233333 67777765 467789999999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
|.++ |. .++++. .+.++.+.+.+. .+...+.+.+.++||.++.+.+..
T Consensus 270 l~~~------g~---~~~~~~----~~~~~~~~~~~~----~~~~~~~~~L~~~gI~~~~~~~~~--------------- 317 (349)
T cd06454 270 LKEL------GF---PVGGSP----SHIIPPLIGDDP----AKAVAFSDALLERGIYVQAIRYPT--------------- 317 (349)
T ss_pred HHhc------CC---cccCCC----CCcEEEEeCCCh----HHHHHHHHHHHhCCceEEEecCCc---------------
Confidence 9887 43 344442 234445544321 345556555555699997531100
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
...+.+.||++++.++|.+||+++++.|+++
T Consensus 318 ------------------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 318 ------------------VPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred ------------------cCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 0112369999999999999999999998764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=203.00 Aligned_cols=309 Identities=13% Similarity=0.136 Sum_probs=204.2
Q ss_pred cccccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHH
Q 006746 156 GNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRT 234 (632)
Q Consensus 156 ~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~ 234 (632)
+++.+.+..|. .+.+.+.|+.|++++|.+ .++.++|+++|++.+..++ +++||+|++. .+|++ ....
T Consensus 71 ~~~~s~~~~G~--~~~~~~le~~ia~~~g~~----~~ii~~~~~~a~~~~~~~l-~~~gd~vi~~~~~~~s-~~~~---- 138 (393)
T TIGR01822 71 GMSSVRFICGT--QDIHKELEAKIAAFLGTE----DTILYASCFDANGGLFETL-LGAEDAIISDALNHAS-IIDG---- 138 (393)
T ss_pred CCCCcCcccCC--hHHHHHHHHHHHHHhCCC----cEEEECchHHHHHHHHHHh-CCCCCEEEEeccccHH-HHHH----
Confidence 34455544443 467789999999999984 2444578899999999998 8999997764 46664 3332
Q ss_pred HHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC
Q 006746 235 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP 313 (632)
Q Consensus 235 a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g 313 (632)
.+..+++...++ .++++++++.|.+....+.++++++++++.|.||...|++ |+++|+++|+++++|.+|..|
T Consensus 139 ~~~~~~~~~~~~------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g 212 (393)
T TIGR01822 139 VRLCKAKRYRYA------NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATG 212 (393)
T ss_pred HHhcCCceEEeC------CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCcccc
Confidence 233344443221 2688999998875321123578999999999999999999 999999999999999998765
Q ss_pred CCCC-------CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCC
Q 006746 314 KDMD-------SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 314 ~~m~-------~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
..-. .+++. .++|++++|+||++|. + ..|+++.+++.++.+.+.... +.
T Consensus 213 ~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g-~-r~G~~~~~~~~~~~l~~~~~~-----------~~---------- 268 (393)
T TIGR01822 213 FLGPTGRGSHELCGVM-GRVDIITGTLGKALGG-A-SGGFTTARKEVVELLRQRSRP-----------YL---------- 268 (393)
T ss_pred CcCCCCCchHHhcCCC-CCCeEEEEEChHHhhC-C-CcEEEEeCHHHHHHHHHhCcc-----------ce----------
Confidence 4100 12332 3689999999997773 4 459999888776655331000 00
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
+ .++ .+...+.++. ++|+.++ +++.+
T Consensus 269 --------~----~~~----------------~~~~~~~a~~------------------------~al~~~~--~~~~~ 294 (393)
T TIGR01822 269 --------F----SNS----------------LPPAVVGASI------------------------KVLEMLE--ASNEL 294 (393)
T ss_pred --------e----cCC----------------CCHHHHHHHH------------------------HHHHHHh--cCHHH
Confidence 0 011 0111112222 5666654 46778
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
.+|.+.+.+++++.|.++ |. .++++ .++++.+.+.+. .+...+.+.+.++||.++ |..+..
T Consensus 295 ~~~~~~~~~~l~~~L~~~------g~---~~~~~-----~~~~~~i~~~~~----~~~~~l~~~L~~~gI~v~-~~~~~~ 355 (393)
T TIGR01822 295 RDRLWANTRYFRERMEAA------GF---DIKPA-----DHPIIPVMLYDA----VLAQRFARRLLEEGIYVT-GFFYPV 355 (393)
T ss_pred HHHHHHHHHHHHHHHHHc------CC---CCCCC-----CCCEEEEEeCCH----HHHHHHHHHHHHCCeeEe-eeCCCC
Confidence 899999999999999876 43 23332 245666655431 233445444445699987 422110
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+...||+|+++++|.+||+++++.|++.+.
T Consensus 356 --------------------------------~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 388 (393)
T TIGR01822 356 --------------------------------VPKGQARIRVQISAAHTEEQLDRAVEAFTRIGR 388 (393)
T ss_pred --------------------------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 011234799999999999999999999998754
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=205.75 Aligned_cols=290 Identities=15% Similarity=0.147 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
...+.++++++++|++ .++||+++++|+.+++.++ ..+|+.|++ .+.|.+ .. ..++..|+++..++
T Consensus 100 ~~~~le~~la~~~g~~----~~~~~~sG~~An~~~l~~l-~~~g~~v~~~~~~h~s-~~----~~~~~~g~~~~~~~--- 166 (407)
T PRK07179 100 PKPQFEKKLAAFTGFE----SCLLCQSGWAANVGLLQTI-ADPNTPVYIDFFAHMS-LW----EGVRAAGAQAHPFR--- 166 (407)
T ss_pred HHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHh-CCCCCEEEEECCcCHH-HH----HHHHHCCCeEEEec---
Confidence 5567778999999984 3688999999999999988 567888764 456654 22 23345677765432
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC-------CCCCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-------MDSFGL 321 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-------m~~ldl 321 (632)
..|+++|+++|++++ +++|++.++.|+||.++|++ |.++|+++|+++++|.+|..|.. +..+++
T Consensus 167 ---~~d~~~l~~~l~~~~-----~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~ 238 (407)
T PRK07179 167 ---HNDVDHLRRQIERHG-----PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGL 238 (407)
T ss_pred ---CCCHHHHHHHHHhcC-----CeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCC
Confidence 258899999997532 48999999999999999999 99999999999999999987531 012333
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
. .++|+++.|++|.+| + +.|+++++++.++.+......+ .+ .
T Consensus 239 ~-~~vdi~~~S~sK~~g--~-~~G~l~~~~~~~~~~~~~~~~~-----------------------------~~----~- 280 (407)
T PRK07179 239 T-SRVHFITASLAKAFA--G-RAGIITCPRELAEYVPFVSYPA-----------------------------IF----S- 280 (407)
T ss_pred C-CCCCEEEeechHhhh--c-cCeEEEeCHHHHHHHHHhCcCe-----------------------------ee----C-
Confidence 2 357999999999998 5 4899998877654332110000 00 1
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
+|...+.+.++. ++++.+.. .+...++++.+.++|++.|
T Consensus 281 ---------------~t~~~~~~aa~~------------------------aal~~~~~--~~~~~~~l~~~~~~l~~~L 319 (407)
T PRK07179 281 ---------------STLLPHEIAGLE------------------------ATLEVIES--ADDRRARLHANARFLREGL 319 (407)
T ss_pred ---------------CCCCHHHHHHHH------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 111222233333 66777654 3567789999999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE 561 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~ 561 (632)
.++ |. ++++ .++++.+.+.+. .+...+.+.+.++||.++ .+|.+..
T Consensus 320 ~~~------g~---~v~~------~~~i~~l~~~~~----~~~~~~~~~L~~~GI~~~--~~~~p~~------------- 365 (407)
T PRK07179 320 SEL------GY---NIRS------ESQIIALETGSE----RNTEVLRDALEERNVFGA--VFCAPAT------------- 365 (407)
T ss_pred HHc------CC---CCCC------CCCEEEEEeCCH----HHHHHHHHHHHHCCceEe--eecCCCC-------------
Confidence 987 42 3332 357888776431 134556666777899743 3444310
Q ss_pred hhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 562 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+.||+|++.++|.|||+++++.|++.++.
T Consensus 366 ------------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 366 ------------------PKNRNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred ------------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 113469999999999999999999999998775
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-21 Score=205.07 Aligned_cols=316 Identities=14% Similarity=0.153 Sum_probs=220.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCcc-EEEeCCHHHHHHHHHhhCCC-CCCCeEEEeccccchhhHHHHHHHHhcCC-EEEE
Q 006746 168 ESGLESAMKKRIMDFLNISENDYG-MVFTANRTSAFKLLAESYPF-MSVKNLLTVYDYESEAVEAMIRTSEKRGA-RVMS 244 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~-vvft~naT~al~lv~~sl~~-~~gd~ilt~~d~~s~~v~~~~~~a~~~G~-~v~~ 244 (632)
-.++++++++.+.++|+++ ++|. +++++++|.++..+..++ + ++|+++|.. ..++ -.|+.+++++.|+ +|..
T Consensus 37 F~~i~~e~~~~L~~l~~~~-~~~~v~~l~GsGT~a~Eaa~~nl-~~~~g~~vLv~-g~FG--~r~~~eia~~~g~~~v~~ 111 (374)
T TIGR01365 37 GKEKLAEAIKKTREMLGVP-ADYLIGIVPASDTGAVEMALWSM-LGCRGVDVLAW-ESFG--KGWVTDVTKQLKLPDVRV 111 (374)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCcEEEEECCchHHHHHHHHHHc-CCCCCCeEEEE-CHHH--HHHHHHHHHhcCCCCcEE
Confidence 3689999999999999985 4565 455999999999999998 4 478887654 3554 3565589999999 5888
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCC
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSL 323 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~ 323 (632)
+..+|.. .+++++++. +. . ++++|..+.||+.+|++ +++.. ++++++||+++++|. .+++++
T Consensus 112 l~~~~g~-~~~~~~ve~----~~------~-v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~--~~l~~d- 174 (374)
T TIGR01365 112 LEAEYGK-LPDLKKVDF----KN------D-VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFA--QDLDYH- 174 (374)
T ss_pred EcCCCCC-CCCHHHcCC----CC------C-EEEecCCCchheecccccccccc--CCCcEEEEccchhcC--CCCChh-
Confidence 8887654 478888862 11 2 67999999999999998 66433 489999999988887 588887
Q ss_pred CCCcEEEEccccccCCCCCceEEEEEeCCCccccCC--CCCCCceeecccccccccccccCCCCCCccccchhhh-hhhc
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD--NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ-EKVA 400 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~--~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-e~e~ 400 (632)
++|++++|++|.+|. |+|+++++++++++++.+. .++. .+. ++ ++... ..+. ....
T Consensus 175 -~iDv~~tgsQK~L~~-ppGls~v~vs~~Al~~~~~~~~y~~-----~~~---~~--------~~~~~---~~~~~~~~~ 233 (374)
T TIGR01365 175 -KLDVVTFSWQKVLGG-EGAHGMLILSPRAVARLESYTPAWP-----LPK---IF--------RLTKG---GKLNKKIFE 233 (374)
T ss_pred -HCcEEEEechhccCC-CCceEEEEECHHHHHHHhhcCCCCC-----Chh---hh--------ccccc---cchhhhhhc
Confidence 499999999998887 8899999999999876542 1110 000 00 00000 0000 0000
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVN 479 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~ 479 (632)
+.. +-||++..++++. .+|+.+.+. |++++.+|.+.+++.+++
T Consensus 234 ~~t------------~~TP~v~~l~a~~------------------------~~l~~i~~egGle~~~~Rh~~~a~~l~~ 277 (374)
T TIGR01365 234 GST------------INTPSMLCVEDWL------------------------DALKWAESIGGLKPLIARADDNLAVLEA 277 (374)
T ss_pred CCC------------CCChHHHHHHHHH------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 111 1234444555554 778777776 899999999999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCc-EEEEEEccCCCCcc--C-----HHHHHHHHHhCCcEEccCccCChHHHhH
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKI--E-----PVLVQKLADRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~-ivaFnv~~~~G~~i--~-----~~~V~kla~~~gI~lr~G~~c~~~~~~~ 551 (632)
.+.++ | .+.++... +..|++ ++++.+.+..-..+ + ...+.+.+.++||.+..|..
T Consensus 278 ~l~~l------g--~l~~~~~~-~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~-------- 340 (374)
T TIGR01365 278 FVAKN------N--WIHFLAET-PEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSY-------- 340 (374)
T ss_pred HHHHC------C--CcccCCCC-hhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEecccc--------
Confidence 99998 4 24455432 234555 55566644210001 2 46777777788999976621
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
......+||+.--.-+.+||++|+++|.
T Consensus 341 ----------------------------~~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 341 ----------------------------RDAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred ----------------------------ccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 1112489999888889999999998874
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=206.71 Aligned_cols=353 Identities=10% Similarity=0.068 Sum_probs=223.9
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHH-HHHHHHHHcCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA-MKKRIMDFLNIS 186 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~-~R~~ia~~l~a~ 186 (632)
+.+.|+ ++-+++|+.+++++..++... |..+++.+.+..|....+.+++ +|+.+++++|++
T Consensus 26 ~~~~l~-~~~n~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~ 87 (416)
T PRK00011 26 EHIELI-ASENFVSPAVMEAQGSVLTNK-----------------YAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAE 87 (416)
T ss_pred cCeeee-cccCcCCHHHHHHHhchhhcc-----------------cccCCCCccccccchHHHHHHHHHHHHHHHHhCCC
Confidence 344444 456668999999976643211 1114444443334334455555 799999999997
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
.. .|+++ |+|+|+.+++.++ +++||+|++ ..+|.+....+........|++++.++++..++.+|.+++++++++
T Consensus 88 ~~--~i~~~-sgt~al~~~l~~l-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~ 163 (416)
T PRK00011 88 YA--NVQPH-SGSQANAAVYFAL-LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE 163 (416)
T ss_pred ce--eeecC-CchHHHHHHHHHh-cCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh
Confidence 53 46555 5688999999999 899999765 4566532112211112346788888888755678999999999975
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC---CCCCCCCCCCCcEEEEccccccCCCC
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~---m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
. +++++++++ +.+|...|++ |+++|+++|+++++|++|+.|.- ..+.++. ++|++++|+||+++. |
T Consensus 164 ~-----~~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g-~ 233 (416)
T PRK00011 164 H-----KPKLIIAGA--SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRG-P 233 (416)
T ss_pred c-----CCCEEEECC--CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCC-C
Confidence 2 247777753 4578888999 99999999999999999877641 0133444 689999999997643 7
Q ss_pred CceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcc
Q 006746 342 SGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLE 420 (632)
Q Consensus 342 ~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~ 420 (632)
.| |+++.+ ++.++.++.....+. .+++.
T Consensus 234 ~g-g~i~~~~~~~~~~l~~~~~~~~--------------------------------------------------~~~~~ 262 (416)
T PRK00011 234 RG-GLILTNDEELAKKINSAVFPGI--------------------------------------------------QGGPL 262 (416)
T ss_pred Cc-eEEEeCCHHHHHHHHHHhCccc--------------------------------------------------cCCcc
Confidence 65 455544 455544432110000 00111
Q ss_pred cchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECC
Q 006746 421 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGP 500 (632)
Q Consensus 421 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp 500 (632)
.+.+.++. .++..+...+++.+.++.+.+++++++.|.++ | ++++.
T Consensus 263 ~~~~aa~~------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~- 308 (416)
T PRK00011 263 MHVIAAKA------------------------VAFKEALEPEFKEYAQQVVKNAKALAEALAER------G---FRVVS- 308 (416)
T ss_pred HHHHHHHH------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC------C---Ceeee-
Confidence 11223322 34433334478888999999999999999987 4 34442
Q ss_pred CCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCC
Q 006746 501 KIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580 (632)
Q Consensus 501 ~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 580 (632)
. ...+.++.+.+.+. + ++...+.+++.++||.++.+..-.. .. ..
T Consensus 309 ~--~~~~~~~~i~~~~~-~--~~~~~~~~~L~~~GI~v~~~~~p~~--~~----------------------------~~ 353 (416)
T PRK00011 309 G--GTDNHLVLVDLRSK-G--LTGKEAEAALEEANITVNKNAVPFD--PR----------------------------SP 353 (416)
T ss_pred c--CCCCeEEEEeCccc-C--CCHHHHHHHHHHcCcEEccCcCCCC--CC----------------------------CC
Confidence 1 12357777776432 1 4566777777888999975421000 00 01
Q ss_pred CCCcEEEEccCCC----CCHHHHHHHHHHHHHhhhh
Q 006746 581 LGITVVTASLGYL----ANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 581 ~~~~~VRvSlg~~----~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+|++.... .|.+||+++++.|++++..
T Consensus 354 ~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 354 FVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred CCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 1234689876443 4699999999999998764
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=198.59 Aligned_cols=347 Identities=16% Similarity=0.134 Sum_probs=238.0
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCc
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey 190 (632)
|+=.+|=+.+|..|+++..+.+-..... .+..+.+ +| .+..-.++++++++.+.++|+++ ++|
T Consensus 6 ~nF~aGPa~lp~~Vl~~~~~~~~~~~~~------g~si~ei--------sH--Rs~~F~~i~~~~~~~Lr~Ll~~P-~~y 68 (364)
T PRK12462 6 LNFSGGPGALPDTVLEQVRQAVVELPET------GLSVLGM--------SH--RSSWFSSLLAQAEADLRDLLGIP-DEY 68 (364)
T ss_pred ceecCCCcCCCHHHHHHHHHHHhccccc------Ccccccc--------cc--ccHHHHHHHHHHHHHHHHHhCCC-CCC
Confidence 3334666688999999876433221110 1111111 01 12234789999999999999996 457
Q ss_pred cEEEeC-CHHHHHHHHHhhCCCCCCCeEE--EeccccchhhHHHHHHHHhcCCEEEEEeccCC---ccccCHHHHHHHHH
Q 006746 191 GMVFTA-NRTSAFKLLAESYPFMSVKNLL--TVYDYESEAVEAMIRTSEKRGARVMSAEFSWP---RLRINSEKLRKMVV 264 (632)
Q Consensus 191 ~vvft~-naT~al~lv~~sl~~~~gd~il--t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~---~~~i~~~~l~~~i~ 264 (632)
.|+|.+ ++|.++..+..++ +.+|++++ ....+.+ -.| .+.|++.| +|..+...++ ...+++++++ +.
T Consensus 69 ~Vlfl~GggT~~~ea~~~Nl-l~~g~~~~~~~~tG~fg--~r~-~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~ 141 (364)
T PRK12462 69 GVVFLQGGSSLQFSMIPMNF-SRPGAAAPEYVTTGYWS--RKA-IGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WD 141 (364)
T ss_pred eEEEEeccHHHHHHHHHHHc-CCCCCcEEEEEeCCHHH--HHH-HHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cC
Confidence 776665 5999999999999 67888643 5567775 345 55678887 6666543221 1223445541 11
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCce
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF 344 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~ 344 (632)
+....|.++|..+.||+.+| +..+..+++++||+++.++. .++|+++| |++.++.+|.+| |.|+
T Consensus 142 ------~d~~~v~~t~NETstGv~~~----~~~~~~~~llvvD~sS~~~s--~pid~~~~--dvi~agsQKnlg--P~Gl 205 (364)
T PRK12462 142 ------ARAPFRHYVSNETVEGLQFP----DAAGLPDSPLIADMSSDFMS--RPFDVEAY--GMVYAHAQKNLG--PAGV 205 (364)
T ss_pred ------CCCcEEEEccCCCCceEecC----cccccCCCeEEEEcCchhhC--CCCChHHc--cEEEeeccccCC--CCce
Confidence 23578999999999999997 23333589999999988876 59999988 999999999999 8899
Q ss_pred EEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchh
Q 006746 345 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI 424 (632)
Q Consensus 345 G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i 424 (632)
++++||++++++.++... .+|. +. ... +.+.. .-||++..|
T Consensus 206 tvvivs~~al~~~~~~~p-----------~~ld--------y~------~~~--~~~s~------------~nTPpv~~i 246 (364)
T PRK12462 206 TVAIIRRALLERVPDTLP-----------PMLD--------FR------THV--EHRSN------------YNTPPVFAI 246 (364)
T ss_pred EEEEECHHHHhhccccCC-----------chhh--------HH------HHH--hcCCC------------CCCchHHHH
Confidence 999999999876654211 1110 00 000 11111 125777888
Q ss_pred hHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC
Q 006746 425 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 502 (632)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~--Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~ 502 (632)
+.+. .+|+++.+. |++.+.+|.+.+++.|++.+.++. .+- ..+-+
T Consensus 247 y~l~------------------------~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~--------~~~-~~~~~ 293 (364)
T PRK12462 247 YVMA------------------------LVLRWIRDEIGGVHAMRDINARKAAMLYATLDALN--------EVI-DCHAH 293 (364)
T ss_pred HHHH------------------------HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCC--------Ccc-cCCCC
Confidence 9887 999999876 999999999999999999999983 121 12334
Q ss_pred CCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCC
Q 006746 503 RFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 581 (632)
Q Consensus 503 ~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 581 (632)
+..|+ -.|+|.+.|.. + -..+.+.+.++|+.--.| .+
T Consensus 294 ~~~RS~mnv~f~~~~~~---l-~~~f~~~a~~~gl~~lkG--------------------------------------hr 331 (364)
T PRK12462 294 RAARSTMNVAFRFRQPR---L-DTLFKEQSTEAGFCGLSG--------------------------------------HR 331 (364)
T ss_pred hhhcCcceEEEEcCCHH---H-HHHHHHHHHHCCCccccC--------------------------------------Cc
Confidence 45666 46788877631 2 334445666777764333 23
Q ss_pred CCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 582 GITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 582 ~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..|.+|+|+---.+.|+|++|++|+++|-.
T Consensus 332 ~vgg~Ras~yna~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 332 SIGGIRASLYNAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999854
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=207.17 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=130.6
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++......++.++++++++|++. .++| +|++.|+.++.. + +++||+|++ ...|++... .+.+.+++.|+++
T Consensus 48 y~r~~~p~~~~le~~lA~l~g~~~---~v~~-~sG~~ai~~~l~-~-l~~Gd~Vlv~~~~y~~~~~-~~~~~~~~~G~~v 120 (390)
T PRK08064 48 YSRSGNPTREALEDIIAELEGGTK---GFAF-ASGMAAISTAFL-L-LSKGDHVLISEDVYGGTYR-MITEVLSRFGIEH 120 (390)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCC---eEEE-CCHHHHHHHHHH-H-hCCCCEEEEccCccchHHH-HHHHHHHHcCCEE
Confidence 455555677899999999999862 4554 677888888775 3 688999765 456765333 3355677899999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++.+ +.++++++++++ ++++.+.+.+|+||...|++ |.++|+++|+.++||+++..+....++
T Consensus 121 ~~v~~~------d~~~l~~~l~~~------tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-- 186 (390)
T PRK08064 121 TFVDMT------NLEEVAQNIKPN------TKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-- 186 (390)
T ss_pred EEECCC------CHHHHHHhcCCC------ceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch--
Confidence 998763 578888888764 48999999999999999999 999999999999999998777522233
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEeC-CCcccc
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVKK-STVPIL 357 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~-~~~~~L 357 (632)
.+++|+++.|+||+++. |.| .|++++++ +.++.+
T Consensus 187 -~~g~Divv~S~tK~~~G-~~~~laG~~v~~~~~~~~~l 223 (390)
T PRK08064 187 -DLGADVVLHSATKFLAG-HSDVLAGLAVVKDEELAQKL 223 (390)
T ss_pred -hhCCcEEEeecceeccC-CccceeEEEEeCCHHHHHHH
Confidence 35889999999998764 666 47777764 344444
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=203.14 Aligned_cols=351 Identities=12% Similarity=0.062 Sum_probs=226.6
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHH-HHHHHHHHcCCCCCCccE
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA-MKKRIMDFLNISENDYGM 192 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~-~R~~ia~~l~a~~~ey~v 192 (632)
+++-+++++.+++++..++... |..+++.+.+..|....+.+++ +++.+++++|++.. .|
T Consensus 25 ~~~~~~~~~~v~~a~~~~~~~~-----------------~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~--~v 85 (402)
T cd00378 25 IASENFTSPAVMEAMGSDLTNK-----------------YAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYA--NV 85 (402)
T ss_pred eccCCcCCHHHHHHhccccccc-----------------ccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCce--ee
Confidence 5777788999999987654210 1125555554323333344444 78889999999743 35
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCC--ccccCHHHHHHHHHhcCcC
Q 006746 193 VFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWP--RLRINSEKLRKMVVSKGKK 269 (632)
Q Consensus 193 vft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~--~~~i~~~~l~~~i~~~~~~ 269 (632)
+++ |+|+|+.+++.++ +++||+|++ ...|++....+....++..|+++..++++.. ++.+|++++++++.+.
T Consensus 86 ~~~-sgt~a~~~~l~~l-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~--- 160 (402)
T cd00378 86 QPH-SGSQANLAVYFAL-LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEF--- 160 (402)
T ss_pred ecC-CcHHHHHHHHHHh-cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhC---
Confidence 545 6789999999999 789999765 4566542122211124567888888877543 6789999999998642
Q ss_pred CCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC---CCCCCCCCCCCcEEEEccccccCCCCCceE
Q 006746 270 KKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFG 345 (632)
Q Consensus 270 ~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~---m~~ldls~~~~Df~~~S~hK~~G~~P~G~G 345 (632)
+++++++++. .+|...|++ |+++|+++|+++++|++|+.|.. ..+..++ ++|++++|+||+|+. |.|.+
T Consensus 161 --~~~~v~~~~~--~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G-~~gg~ 233 (402)
T cd00378 161 --KPKLIVAGAS--AYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRG-PRGGL 233 (402)
T ss_pred --CCCEEEecCc--ccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCC-CCceE
Confidence 2478877665 457888999 99999999999999999866531 0133333 679999999997743 77654
Q ss_pred EEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhh
Q 006746 346 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS 425 (632)
Q Consensus 346 ~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~ 425 (632)
+++.+++.++.+......+. .+++..+.+.
T Consensus 234 i~~~~~~~~~~l~~~~~~~~--------------------------------------------------~~~~~~~~~~ 263 (402)
T cd00378 234 ILTRKGELAKKINSAVFPGL--------------------------------------------------QGGPHLHVIA 263 (402)
T ss_pred EEeccHHHHHHHHHHhCccc--------------------------------------------------cCCchHHHHH
Confidence 44433365544432110000 0111122233
Q ss_pred HhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCC
Q 006746 426 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 505 (632)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~ 505 (632)
++. .++......+++...++.+.+.+++.+.|.++ | ++++.+. .
T Consensus 264 a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~ 307 (402)
T cd00378 264 AKA------------------------VALKEALEPEFKAYAKQVVENAKALAEALKER------G---FKVVSGG---T 307 (402)
T ss_pred HHH------------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC------C---CeEeecC---C
Confidence 333 55555544356778888999999999999886 4 3444221 2
Q ss_pred CCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcE
Q 006746 506 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV 585 (632)
Q Consensus 506 rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (632)
.+..+.+.+.+. + .+...+.+++.++||.++.+.+ +... . +..+...
T Consensus 308 ~~~~v~v~~~~~-~--~~~~~~~~~l~~~gI~v~~~~~--p~~~----------------------~------~~~~~~~ 354 (402)
T cd00378 308 DNHLVLVDLRPK-G--ITGKAAEDALEEAGITVNKNTL--PWDP----------------------S------SPFVPSG 354 (402)
T ss_pred CCeEEEEeCCcc-C--CCHHHHHHHHHHcCcEEcCCcC--CCCC----------------------C------CCCCCCe
Confidence 356666666532 1 3556777888889999975421 1100 0 0113468
Q ss_pred EEEccCCCC----CHHHHHHHHHHHHHhhhhcc
Q 006746 586 VTASLGYLA----NFEDVYRLWAFVAQFLDADF 614 (632)
Q Consensus 586 VRvSlg~~~----t~eDV~rlv~~l~~~l~~~f 614 (632)
+|++++.++ +.+||+.+++.|++++...-
T Consensus 355 lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 355 IRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred eEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 999999987 79999999999999776643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=199.97 Aligned_cols=359 Identities=13% Similarity=0.082 Sum_probs=233.7
Q ss_pred CCCCCCCHHHHHHHhcCC-CCCCCCCCCCCCCCccccccccccccccccccccch-hHHHHHHHHHHHHHcCCCCCCccE
Q 006746 115 FGIGLFSYNQLHKQESSP-SHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESAMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~-~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~-~~~~~~~R~~ia~~l~a~~~ey~v 192 (632)
++-...|+.++++....+ +... .+.|.+++.-|... .++++-++++.+++|++.++.+.+
T Consensus 41 asen~~s~~v~~a~~s~~~~ky~------------------~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~ 102 (475)
T PLN03226 41 ASENFTSRAVMEALGSCLTNKYS------------------EGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGV 102 (475)
T ss_pred cCCccCCHHHHHHHhhHHhcccc------------------CCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEE
Confidence 777789999999976655 2221 23444444223222 455566888899999998653221
Q ss_pred EE-eCCHHHHHHHHHhhCCCCCCCeEEE-ec---cccchhhHHHHHHHHhcCC--EEEEE--eccCCccccCHHHHHHHH
Q 006746 193 VF-TANRTSAFKLLAESYPFMSVKNLLT-VY---DYESEAVEAMIRTSEKRGA--RVMSA--EFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 193 vf-t~naT~al~lv~~sl~~~~gd~ilt-~~---d~~s~~v~~~~~~a~~~G~--~v~~v--~~~~~~~~i~~~~l~~~i 263 (632)
-. ..+++.|...+..++ +++||+|+. .. .|.+ ..++..-.+-.+. .+..+ ..+..++.+|.++|++++
T Consensus 103 nv~~~SG~~AN~av~~aL-~~pgD~Il~~d~~~gGhl~--H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l 179 (475)
T PLN03226 103 NVQPLSGSPANFAVYTAL-LQPHDRIMGLDLPHGGHLS--HGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKA 179 (475)
T ss_pred ecCcCchHHHHHHHHHHh-CCCCCEEEECCCCcCcchh--hhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHH
Confidence 11 367888888899998 799999876 32 2332 1121111111112 22222 334467889999999998
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEEEcccccc-C
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLICSFYQIF-G 338 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls---~~~~Df~~~S~hK~~-G 338 (632)
... +++++++ .. ..+|...|++ +.++|+++|++++||+||.+|. ...+.. ..++|++++++||++ |
T Consensus 180 ~~~-----~pklIv~-~~-S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gl--i~~~~~~~p~~~~Div~~t~hK~L~G 250 (475)
T PLN03226 180 MLF-----RPKLIIA-GA-SAYPRDWDYARMRKIADKVGALLMCDMAHISGL--VAAQEAASPFEYCDVVTTTTHKSLRG 250 (475)
T ss_pred hhc-----CCeEEEE-ec-CcCCCccCHHHHHHHHHHcCCEEEEEchhhhCc--ccCCCCCCCCCCCeEEEecCcccccC
Confidence 753 2466655 23 3588999999 9999999999999999999986 333332 127899999999977 6
Q ss_pred CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCC
Q 006746 339 ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 418 (632)
Q Consensus 339 ~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt 418 (632)
|.| |+++++++.++.+.+. .++..++. +..+. ..+ +.| .|+
T Consensus 251 --P~G-g~I~~~~~~~~~~~~g-~~~~~d~~------~~i~~------------a~~-------~~~----------~g~ 291 (475)
T PLN03226 251 --PRG-GMIFFRKGPKPPKGQG-EGAVYDYE------DKINF------------AVF-------PGL----------QGG 291 (475)
T ss_pred --CCc-eEEEEchhhcccccCC-CccHHHHH------HHhcc------------ccC-------Ccc----------CCC
Confidence 999 8889988765443321 11110000 00000 000 011 244
Q ss_pred cccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEE
Q 006746 419 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 498 (632)
Q Consensus 419 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iy 498 (632)
++...+.++. .||+++.+.|.+.+.+|+..++++|.+.|.++ | ++|+
T Consensus 292 p~~~~iaal~------------------------aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~------G---~~l~ 338 (475)
T PLN03226 292 PHNHTIAALA------------------------VALKQAMTPEFKAYQKQVKANAAALANRLMSK------G---YKLV 338 (475)
T ss_pred chHHHHHHHH------------------------HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC------C---CEEE
Confidence 6777788887 99999998999999999999999999999886 4 5677
Q ss_pred CCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccccc
Q 006746 499 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 578 (632)
Q Consensus 499 gp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 578 (632)
++.. ..+-.+|.|+..+ ++...+.+.+++.||.+-.+.. |+. .
T Consensus 339 ~~~t-~~hi~lv~~~~~g-----i~~~~~~~~L~~~~I~~nk~~~--p~~-----------------------------~ 381 (475)
T PLN03226 339 TGGT-DNHLVLWDLRPLG-----LTGSRVEKVLDLAHITLNKNAV--PGD-----------------------------S 381 (475)
T ss_pred cCCC-CCCEEEEEccCCC-----CCHHHHHHHHHHCCCEECCCCC--CCC-----------------------------c
Confidence 7642 2233344443333 7888999999999999864420 000 0
Q ss_pred CCCCCcEEEEc----cCCCCCHHHHHHHHHHHHHhhhh
Q 006746 579 ANLGITVVTAS----LGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 579 ~~~~~~~VRvS----lg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+.||+. +..-.+++|++++.++|.+.|+.
T Consensus 382 ~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 382 SALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred ccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 12234567773 45666889999999999999984
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=197.07 Aligned_cols=165 Identities=14% Similarity=0.100 Sum_probs=135.2
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++.....+++.+++++++.|+. ..++|+|+|+|+++++.++ +++||+|++ ..+|.+ ....+...+++.|+++
T Consensus 58 y~R~~~p~~~~le~~lA~l~g~~----~av~~sSGt~Al~~al~~l-l~~Gd~Vi~~~~~y~~-t~~~~~~~l~~~Gi~v 131 (433)
T PRK08134 58 YSRISNPTVAVLEERVAALEGGV----GAIATASGQAALHLAIATL-MGAGSHIVASSALYGG-SHNLLHYTLRRFGIET 131 (433)
T ss_pred eecCcChHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCccHH-HHHHHHHHHhhCCeEE
Confidence 44334456789999999999985 2689999999999999998 899999765 557765 3333344457789999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
++++++ |+++++++|+++| +||++.+.+|++|.+.|++ |+++||++|++++||++|..|.. ...+
T Consensus 132 ~~vd~~------d~~~l~~~i~~~T------klV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~--~~pl 197 (433)
T PRK08134 132 TFVKPG------DIDGWRAAIRPNT------RLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYL--LRPF 197 (433)
T ss_pred EEECCC------CHHHHHHhcCCCC------eEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCccccc--CCch
Confidence 999763 6889999998754 8999999999999999999 99999999999999999998873 3344
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~ 351 (632)
.+++|++++|.||++| |.| +|.+++..
T Consensus 198 -~~GaD~vv~S~tK~l~--g~g~~~gG~v~~~ 226 (433)
T PRK08134 198 -EHGADLVYHSATKFLG--GHGTAIGGVLVDG 226 (433)
T ss_pred -hcCCCEEEeccccccC--CCCCceEEEEEec
Confidence 5799999999999998 556 77887753
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=202.28 Aligned_cols=168 Identities=11% Similarity=0.123 Sum_probs=130.7
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCE
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~ 241 (632)
.|+.......++.++++++++|++ .++++++++.|+.++.. + +++||+|++. ..|.+ ....+...+++.|++
T Consensus 40 ~Y~r~~~p~~~~le~~la~l~g~~----~~l~~~sG~~al~~~l~-l-l~~Gd~Vl~~~~~y~~-~~~~~~~~~~~~G~~ 112 (378)
T TIGR01329 40 DYTRSGNPTRTALESLLAKLDKAD----RAFAFSSGMAALDVITR-L-LNNGDEIIAGDDLYGG-TDRLLTQVVPRSGVV 112 (378)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHH-H-hCCCCEEEEcCCCchH-HHHHHHHHHHHcCcE
Confidence 344444455789999999999993 24555666779998876 4 6899997764 56654 333345667889999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
++.++.. ++++++++|+++ ++++.+.+.+|++|...|++ |+++||++|+.++||++++.|....++
T Consensus 113 v~~vd~~------d~~~le~~i~~~------tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l- 179 (378)
T TIGR01329 113 VVHVDTT------DLDKVKAALGPK------TKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL- 179 (378)
T ss_pred EEEeCCC------CHHHHHHhcCcC------ceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-
Confidence 9998763 678899888754 48999999999999999999 999999999999999999877632344
Q ss_pred CCCCCCcEEEEccccccCCCCCc--eEEEEEeCCC
Q 006746 321 LSLVRPDFLICSFYQIFGENPSG--FGCLFVKKST 353 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~ 353 (632)
.+++|++++|++|+++. |.+ .|+++++++.
T Consensus 180 --~~g~Di~v~S~tK~l~G-~~~~~~G~v~~~~~~ 211 (378)
T TIGR01329 180 --ELGADIVYHSATKFLAG-HSDVMAGVLAVKGEE 211 (378)
T ss_pred --hcCCcEEEEecceeccC-CccceeEEEEeCcHH
Confidence 35899999999996653 767 8888887654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-19 Score=193.33 Aligned_cols=342 Identities=11% Similarity=0.054 Sum_probs=228.4
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccc--hhHHHHHHHHHHHHHcCCCCCCcc
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ--ESGLESAMKKRIMDFLNISENDYG 191 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~--~~~~~~~~R~~ia~~l~a~~~ey~ 191 (632)
.++-..+|..+++++...+... |--+.|..++ ||+- ..++..-+.++++++||++-.
T Consensus 55 iasEN~~s~~v~~a~~s~l~nk-----------------yaeg~pg~ry-y~g~~~~d~ie~l~~~ra~~lf~a~~a--- 113 (493)
T PRK13580 55 IASENYSSLAVQLAMGNLLTDK-----------------YAEGTPGHRF-YAGCQNVDTVEWEAAEHAKELFGAEHA--- 113 (493)
T ss_pred ecccccCCHHHHHHhccccccc-----------------CcCCCCCccc-cCCCchHHHHHHHHHHHHHHHhCCCcc---
Confidence 3777889999999977655321 1113333333 4433 257778899999999999643
Q ss_pred EEEeCCHHHHHHHHHhhCCCCC-------------------------------CCeEEEe-c---cccchhhHHHHHHHH
Q 006746 192 MVFTANRTSAFKLLAESYPFMS-------------------------------VKNLLTV-Y---DYESEAVEAMIRTSE 236 (632)
Q Consensus 192 vvft~naT~al~lv~~sl~~~~-------------------------------gd~ilt~-~---d~~s~~v~~~~~~a~ 236 (632)
-|=.-|++.|.-.+..++ .++ ||+|+.. . +|-+.. +...+ .
T Consensus 114 nvqp~Sg~~An~~v~~al-l~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg--~~~n~-~ 189 (493)
T PRK13580 114 YVQPHSGADANLVAFWAI-LAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG--FRPNI-S 189 (493)
T ss_pred cccCCCcHHHHHHHHHHH-hcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC--cccch-h
Confidence 344457888888777776 332 6887632 2 332211 10111 1
Q ss_pred hcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC
Q 006746 237 KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD 315 (632)
Q Consensus 237 ~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~ 315 (632)
....+++..+++..++.+|.+++++.+.+++ .+++++|.|+.++ ..|++ +.++|+++|++++||+||.+|.
T Consensus 190 ~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~------plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD~AH~~Gl- 261 (493)
T PRK13580 190 GKMFHQRSYGVDPDTGLLDYDEIAALAREFK------PLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVDMAHFAGL- 261 (493)
T ss_pred hheeeeEecccCcccCccCHHHHHHHHhhcC------CEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEECchhhce-
Confidence 1224566667776678899999999998765 7899999999955 78999 9999999999999999999986
Q ss_pred CCCCCCC------CCCCcEEEEcccccc-CCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 316 MDSFGLS------LVRPDFLICSFYQIF-GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 316 m~~ldls------~~~~Df~~~S~hK~~-G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
...++. ..++||+++++||++ | |.| |+++++++.++.|+....
T Consensus 262 -igg~~~~~~~~~~~~~D~vtgT~hKaL~G--P~G-G~I~~~~~l~~~L~~a~P-------------------------- 311 (493)
T PRK13580 262 -VAGKVFTGDEDPVPHADIVTTTTHKTLRG--PRG-GLVLAKKEYADAVDKGCP-------------------------- 311 (493)
T ss_pred -eccccchhhcCCCCCCcEEEeCChhhccC--CCe-EEEEecHHHHHHHhhCCC--------------------------
Confidence 333331 237899999999966 7 887 999999887655521100
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
+ ..|++..|.+.++. .++..+.+.+.....+
T Consensus 312 ----------------~---------i~gg~l~p~iAA~a------------------------vAl~e~~~~ef~~y~~ 342 (493)
T PRK13580 312 ----------------L---------VLGGPLPHVMAAKA------------------------VALAEARTPEFQKYAQ 342 (493)
T ss_pred ----------------c---------ccCCCccHHHHHHH------------------------HHHHHHhCccHHHHHH
Confidence 0 01223334444443 5566554444566789
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
++...+++|.+.|.++ |.+.+ +.. ...+||.+.+.+.+ +....+++.+.+.||.+..- .+
T Consensus 343 ~l~~Na~~La~~L~~~------G~~vv---~gg---TdshIV~V~lg~~~---~~g~~a~~~L~e~GI~vn~i---~~-- 402 (493)
T PRK13580 343 QVVDNARALAEGFLKR------GARLV---TGG---TDNHLVLIDVTSFG---LTGRQAESALLDAGIVTNRN---SI-- 402 (493)
T ss_pred HHHHHHHHHHHHHHhc------CCCcc---CCC---CCCCEEEEEeCCHH---HHHHHHHHHHHHCCeEEccc---cC--
Confidence 9999999999999988 65433 221 24689888886521 33456777888889987421 00
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCC----CHHHHHHHHHHHHHhhhh
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLA----NFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~----t~eDV~rlv~~l~~~l~~ 612 (632)
+ .++. +......||+++..++ +++||++++++|.+.++.
T Consensus 403 -------------------P-tvp~-----g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 403 -------------------P-SDPN-----GAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred -------------------C-CCCC-----CCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 0 0000 1122568999999977 599999999999998864
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=207.44 Aligned_cols=327 Identities=11% Similarity=0.039 Sum_probs=220.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHH----HHHhhCCCC---CCC-eEE-EeccccchhhHHHHHHHHhcC
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFK----LLAESYPFM---SVK-NLL-TVYDYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~----lv~~sl~~~---~gd-~il-t~~d~~s~~v~~~~~~a~~~G 239 (632)
.+++.+..+.+++++|.+ .+-+-+|++.--+ ++++.|.-. +++ ++| ....|++|... +...|
T Consensus 542 lq~i~elq~~l~eLtGmd----~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas-----a~~~G 612 (954)
T PRK12566 542 RAMIDELEAWLCAITGFD----AICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS-----AQMAG 612 (954)
T ss_pred HHHHHHHHHHHHHHHCCC----eEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH-----HHHCC
Confidence 477888899999999997 3456665444323 333444222 222 344 45688776332 56689
Q ss_pred CEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC
Q 006746 240 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS 318 (632)
Q Consensus 240 ~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ 318 (632)
++|+.++.+ ++|.+|.++|++++++. +.++..|++++.++..+...|++ |+++||++|++|+||++|..+. ..
T Consensus 613 ieVv~Vp~D-~~G~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~--~~ 686 (954)
T PRK12566 613 MRVVIVECD-PDGNVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQ--VG 686 (954)
T ss_pred CEEEEeccC-CCCCcCHHHHHHHhhcc---CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhc--cC
Confidence 999999998 78899999999999732 13567888888888888888899 9999999999999999998765 35
Q ss_pred CC-CCCCCCcEEEEccccccCCCCCceEEEEEeC-CCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhh
Q 006746 319 FG-LSLVRPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 319 ld-ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~-~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
++ ..++++||++++.||+||. |.|.|.+|+.. ...+.|.|...+ +.++.. + . +-
T Consensus 687 l~~Pg~~GADi~~~s~HKtf~~-P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~---G------~-------------~~ 743 (954)
T PRK12566 687 LARPADIGADVSHMNLHKTFCI-PHGGGGPGMGPIGVRAHLAPFVANHPVVPVE---G------P-------------DP 743 (954)
T ss_pred CCChhhcCCCEEEecCCcccCc-CccCCCCccchhhhhhhhhhhccCCCCcCCC---C------C-------------CC
Confidence 55 3678999999999998886 99999999998 666666665433 111100 0 0 00
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH--HHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG--RCL 473 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~--~~L 473 (632)
..|+.+.... -. ..+.-+++.++..+|.+.++.+. ..+
T Consensus 744 ---r~ga~S~~~~---------------gs----------------------a~~l~~A~~Yi~~lG~eLk~aa~~ailn 783 (954)
T PRK12566 744 ---NNGAVSAAPW---------------GS----------------------ASILPISWMYIAMMGPQLADASEVAILS 783 (954)
T ss_pred ---CCCceeeccc---------------ch----------------------HHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 0122111110 01 00112788899999988666666 778
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCC--CCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRF--DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~--~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~ 551 (632)
++|+.++|.+. .+ +. |.+.+.. ....+..+.+++..| ++...|.+.+.++||...+- .
T Consensus 784 AnYla~rL~~~-------~~-v~-~~~~~~~~~hEfii~~~~l~~~~g--~~~~dvakRL~d~Gihapt~---------~ 843 (954)
T PRK12566 784 ANYLANQLGGA-------FP-VL-YRGRNERVAHECILDLRPLKAQTG--ISEEDVAKRLMDYGFHAPTM---------S 843 (954)
T ss_pred HHHHHHHhHhh-------CC-CC-cCCCCCCeeeEEEEEccccccccC--CCHHHHHHHHHHCCcEEeEE---------e
Confidence 89999999763 12 22 2332111 223333344443333 56677776555899986541 0
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh-cccccccce
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA-DFVEKARWR 621 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~-~f~~~~~~~ 621 (632)
+ ...+.+||+++.+++.+|+|+|+++|+.++++ +-|+..+|.
T Consensus 844 f----------------------------Pv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~v~~g~~~ 886 (954)
T PRK12566 844 F----------------------------PVPGTLMVEPTESESKAELDRFVEAMLSIRAEIGKVQEGNWP 886 (954)
T ss_pred e----------------------------ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 0 12468999999999999999999999999888 567666663
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-19 Score=190.29 Aligned_cols=342 Identities=13% Similarity=0.086 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...++.|+.+++++|++ +.| +++|+|+|+.+++.++.+++||+|+++ ..|++ ....++..|++++.++++
T Consensus 29 ~~~~~le~~la~~~g~~---~~v-~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~-----~~~~~~~~G~~~~~~~~~ 99 (380)
T TIGR03588 29 PTVPAFEEALAEYVGAK---YAV-AFNSATSALHIACLALGVGPGDRVWTTPITFVA-----TANCALYCGAKVDFVDID 99 (380)
T ss_pred hhHHHHHHHHHHHHCCC---eEE-EEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHH-----HHHHHHHcCCEEEEEecC
Confidence 34578999999999985 344 456899999999999988999997754 56654 134457789999999997
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC-
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP- 326 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~- 326 (632)
..++.++++++++.|++.. .++++++.++| .+|...|++ |.++|+++|+++++|++|++|. .++...++.
T Consensus 100 ~~~~~~d~~~l~~~i~~~~--~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~---~~~~~~~g~~ 171 (380)
T TIGR03588 100 PDTGNIDEDALEKKLAAAK--GKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDASHALGA---EYGGKPVGNC 171 (380)
T ss_pred CCcCCcCHHHHHHHhhccc--CCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECCCcccC---ccCCEeCCCc
Confidence 5567789999999997320 12347777654 589999999 9999999999999999999986 244444555
Q ss_pred ---cEEEEccc--cccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 327 ---DFLICSFY--QIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 327 ---Df~~~S~h--K~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
|+.++|+| |+++. |. -|+++.+ ++..+++++...+|.... .. .+. ... ..+..+ +.
T Consensus 172 ~~~d~~~~S~~~~K~~~~-~~-GG~v~~~~~~~~~~~~~~~~~g~~~~---~~-~~~-------~~~--~~~~~~---~~ 233 (380)
T TIGR03588 172 RYADATVFSFHPVKIITT-AE-GGAVTTNDEELAERMRLLRSHGITKD---PL-LFE-------KQD--EGPWYY---EQ 233 (380)
T ss_pred cccceEEEecCCCCcccc-cC-ceEEEECCHHHHHHHHHHHHCCCCCC---cc-ccc-------ccc--cCccee---ee
Confidence 99999999 77774 43 3334433 444444443211121100 00 000 000 000000 11
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
++..+ +-.+.++.+. -++..++. ++.+.++.+.+.+++.+.
T Consensus 234 ~~~g~------------n~~m~~l~aa-------------------------~g~~qL~~--l~~~~~~r~~~~~~~~~~ 274 (380)
T TIGR03588 234 QELGF------------NYRMTDIQAA-------------------------LGLSQLKK--LDRFVAKRREIAARYDRL 274 (380)
T ss_pred ecccc------------ccCccHHHHH-------------------------HHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 11100 0111222211 23334443 688899999999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCc-EEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~-ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
|..+ |.++++.+........ ...+.+...+| ++...+.+.+.++||.++..+.+... ..+.. ..
T Consensus 275 L~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~r~~l~~~L~~~gI~~~~~~~~~~~--~~~~~---~~ 339 (380)
T TIGR03588 275 LKDL--------PYFTPLTIPLGSKSAWHLYPILLDQEFG--CTRKEVFEALRAAGIGVQVHYIPVHL--QPYYR---QG 339 (380)
T ss_pred hcCC--------CCccCCCCCCCCEeEEEEEEEEECCcCC--CCHHHHHHHHHHCCCCcccCCccccc--Chhhh---cc
Confidence 9887 5566655421111111 11122221122 57788888778899999876543211 11100 00
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
.. ...| ++ ........|++.+|...|.+||+++++.|+++|
T Consensus 340 ~~-~~~~-----p~----a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 340 FG-DGDL-----PS----AENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred CC-cCCC-----cH----HHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 00 0000 00 001123589999999999999999999999875
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-18 Score=201.45 Aligned_cols=323 Identities=12% Similarity=0.068 Sum_probs=214.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHH-----HHHHHHHhhCCCCCCC----eEEE-eccccchhhHHHHHHHHhc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRT-----SAFKLLAESYPFMSVK----NLLT-VYDYESEAVEAMIRTSEKR 238 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT-----~al~lv~~sl~~~~gd----~ilt-~~d~~s~~v~~~~~~a~~~ 238 (632)
.+++.+..+.+++++|.+ .+.|++|++ .++ ++++.+.+++|+ +|++ ...|.++ + ..++..
T Consensus 541 l~~i~e~q~~l~eltG~d----~~sl~~~~ga~ge~agL-~a~r~~~~~~G~~~r~~vlis~~aH~sn--p---~sa~~~ 610 (954)
T PRK05367 541 RELIDQLEAWLAEITGYD----AVSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRDVCLIPSSAHGTN--P---ASAVMA 610 (954)
T ss_pred HHHHHHHHHHHHHHHCCC----CEEECccHHHHHHHHHH-HHHHHHhhccCCCCCCEEEEEchhhhhh--H---HHHHHC
Confidence 478889999999999986 478888887 444 677777777776 3554 4567653 2 235668
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCC
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMD 317 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~ 317 (632)
|++|+.++.+ .++.+|.++|+++++++. .++..+++++.++..+...|++ |+++||++|++++||+|+..+. .
T Consensus 611 G~~vv~v~~d-~~G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al--~ 684 (954)
T PRK05367 611 GMKVVVVACD-ENGNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQ--V 684 (954)
T ss_pred CCEEEEECCC-CCCCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhc--c
Confidence 9999999997 678999999999997631 2456677777776644457999 9999999999999999997553 1
Q ss_pred CCC-CCCCCCcEEEEccccccCC----CCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 318 SFG-LSLVRPDFLICSFYQIFGE----NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 318 ~ld-ls~~~~Df~~~S~hK~~G~----~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
.+. ..++++|++++|.||+||. .++|+|+++||+.. .+...|..+.. .....+
T Consensus 685 ~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l----~p~lpg~~v~~--~~~~~~---------------- 742 (954)
T PRK05367 685 GLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHL----APFLPGHPVQI--AGGETG---------------- 742 (954)
T ss_pred CCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccc----cccCCCCccCc--CCCCCC----------------
Confidence 222 2357899999999998653 13457799999643 34433311110 000000
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHH-
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGR- 471 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~- 471 (632)
.|+.. +..++ ....+ -.+.-++..+|.+.+.++.+
T Consensus 743 -------~g~v~-ta~~g------------~al~~------------------------~~a~~yi~~~G~~Glr~~a~~ 778 (954)
T PRK05367 743 -------IGAVS-AAPFG------------SASIL------------------------PISWMYIRMMGAEGLRQATEV 778 (954)
T ss_pred -------cCcch-hHHHH------------HHHHH------------------------HHHHHHHHHHCHHHHHHHHHH
Confidence 01111 00000 00111 15667777778666655555
Q ss_pred --HHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEE-EccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 472 --CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN-VFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 472 --~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFn-v~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
.+++|+.++|.+. ..+...+|..+..+..++.+. ++...| +....|.|.+.++||...+-.
T Consensus 779 ~~~~A~Yl~~~L~~~--------~~~~~~~~~~~~~~e~i~~~~~~~~~~g--~~~~di~krL~d~G~~~~t~~------ 842 (954)
T PRK05367 779 AILNANYIAKRLKDH--------YPVLYTGANGRVAHECILDLRPLKESTG--ITVDDIAKRLIDYGFHAPTMS------ 842 (954)
T ss_pred HHHHHHHHHHHHHhh--------cCccccCCCCCcccceEEEeecccccCC--CCHHHHHHHHHHCCCeEeecC------
Confidence 9999999999774 123334543333445666663 332223 566778877788999876410
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh-cccccccc
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA-DFVEKARW 620 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~-~f~~~~~~ 620 (632)
....+.++|++..+++.+|+|+|+++|+.+.++ .-|+...|
T Consensus 843 -------------------------------~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~~~~~~~ 884 (954)
T PRK05367 843 -------------------------------FPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDEVEAGEW 884 (954)
T ss_pred -------------------------------CccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 012468999999999999999999999998876 44555555
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=189.21 Aligned_cols=283 Identities=11% Similarity=0.099 Sum_probs=195.9
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCcc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRL 252 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~ 252 (632)
.+.|+.+++++|++++ +|++|+|+|+++.+++.++ .++||+|++..-.+ ......++..|++++.++.+ +++
T Consensus 57 ~~lr~~ia~~~~~~~~--~i~~~~G~~~~l~~~~~~l-~~~gd~v~~~~p~y----~~~~~~~~~~g~~~~~~~~~-~~~ 128 (346)
T TIGR01141 57 AELKQALADYYGVDPE--QILLGNGSDEIIELLIRAF-LEPGDAVLVPPPTY----SMYEISAKIHGAEVVKVPLD-EDG 128 (346)
T ss_pred HHHHHHHHHHhCcChH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCH----HHHHHHHHHcCCeEEEeccC-CCC
Confidence 5899999999998765 7999999999999999988 57899987654222 22334567789999999987 557
Q ss_pred ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccC--CCCCCCCCC-CCCCC
Q 006746 253 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALG--PKDMDSFGL-SLVRP 326 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~--g~~m~~ldl-s~~~~ 326 (632)
.++.+++++.+.++ ++++++++.+|+||..+|++ |.++++.. |+++++|.++.. +.. ..++. ...+.
T Consensus 129 ~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~ 201 (346)
T TIGR01141 129 QLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEP-STLPLLAEYPN 201 (346)
T ss_pred CCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCc-cHHHHHhhCCC
Confidence 78999999876543 48999999999999999999 88888876 999999998652 110 01111 12233
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCC
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 406 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~ 406 (632)
++++.|++|+||.+..++|+++++++.++.+.+... .|..
T Consensus 202 ~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~------------~~~~---------------------------- 241 (346)
T TIGR01141 202 LIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRA------------PFNL---------------------------- 241 (346)
T ss_pred EEEEehhhHhhhchhhhceeeecCHHHHHHHHhccC------------CCCC----------------------------
Confidence 577899999998421237999988776655543210 0100
Q ss_pred ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccC
Q 006746 407 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQ 485 (632)
Q Consensus 407 ~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~ 485 (632)
+.+... .++..++.. .++.+.++.+.+.+.+++.|.++
T Consensus 242 -------------~~~~~~---------------------------~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 280 (346)
T TIGR01141 242 -------------SRLAQA---------------------------AAIAALRDDDFIEKTVEEINAERERLYDGLKKL- 280 (346)
T ss_pred -------------CHHHHH---------------------------HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 000000 122222222 26777888889999999999876
Q ss_pred CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhc
Q 006746 486 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 565 (632)
Q Consensus 486 h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~ 565 (632)
|.++++.+ .+..+.|.+.+ +.+.+.+.+.++||.++.|....
T Consensus 281 -------~g~~~~~~-----~g~~~~~~~~~------~~~~~~~~L~~~gI~v~~g~~f~-------------------- 322 (346)
T TIGR01141 281 -------PGLEVYPS-----DANFVLIRFPR------DADALFEALLEKGIIVRDLNSYP-------------------- 322 (346)
T ss_pred -------CCCEECCC-----cCCEEEEecCC------CHHHHHHHHHHCCeEEEeCCCcC--------------------
Confidence 44555432 46777777653 34556666667899998763110
Q ss_pred cccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 566 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
.. .+.+|+|++ +.+|++++++.|+
T Consensus 323 --------------~~-~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 323 --------------GL-PNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred --------------CC-CCeEEEecC---CHHHHHHHHHHhC
Confidence 11 468999976 8999999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-18 Score=181.35 Aligned_cols=334 Identities=15% Similarity=0.159 Sum_probs=211.7
Q ss_pred CCceEeecCCCCC----CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIGL----FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (632)
Q Consensus 107 ~~~vyLD~ag~gl----~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~ 182 (632)
+++.|+|.++..+ .++.+++++.+.+..... +...+...+| .....++.|+.++++
T Consensus 14 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~------------------~~~~~~~~~g--~~~~~~~l~~~la~~ 73 (360)
T TIGR00858 14 DGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGA------------------GSTASRLVSG--NSPLHEELEEELAEW 73 (360)
T ss_pred CCceEEecccCCcccCCCCHHHHHHHHHHHHhcCC------------------CCCCcCcccC--CcHHHHHHHHHHHHH
Confidence 4556777777632 347788887664432100 0001111112 135677899999999
Q ss_pred cCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 183 LNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 183 l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
++.+ ..|++++++ +++..++.++ +++||+|++. ..|++ . ...++..|++++.++. ++.++|++
T Consensus 74 ~~~~---~~i~~~~G~-~~~~~~l~~~-~~~gd~v~~~~~~~~~-~----~~~~~~~g~~~~~~~~------~d~~~l~~ 137 (360)
T TIGR00858 74 KGTE---AALLFSSGY-LANVGVISAL-VGKGDLILSDALNHAS-L----IDGCRLSGARVRRYRH------NDVEHLER 137 (360)
T ss_pred hCCC---CEEEECchH-HHHHHHHHHh-CCCCCEEEEEccccHH-H----HHHHHhcCCceEEecC------CCHHHHHH
Confidence 9963 267777665 5544566666 6889997754 45543 2 2234567888877653 57889999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC-CC------CCCCCCCCCcEEEEcc
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-MD------SFGLSLVRPDFLICSF 333 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-m~------~ldls~~~~Df~~~S~ 333 (632)
.+.+.+ ..++++++++++.+.||...|++ |.++|+++|+++++|.++..+.- .. -.++...+.|+++.|+
T Consensus 138 ~~~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 215 (360)
T TIGR00858 138 LLEKNR--GERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTL 215 (360)
T ss_pred HHHHcc--cCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEec
Confidence 887532 12358999999999999999999 99999999999999999875431 00 0123334679999999
Q ss_pred ccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhh
Q 006746 334 YQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 413 (632)
Q Consensus 334 hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~ 413 (632)
+|+|| +.| |+++.+++.++.+..... .|. + ..++
T Consensus 216 sK~~~--~~g-G~~~~~~~~~~~~~~~~~------------~~~-----------------~---~~~~----------- 249 (360)
T TIGR00858 216 SKALG--SYG-AYVAGSQALIDYLINRAR------------TLI-----------------F---STAL----------- 249 (360)
T ss_pred hhhhh--ccC-cEEEcCHHHHHHHHHhCc------------cce-----------------e---cCCC-----------
Confidence 99999 667 888777665543321100 000 0 0000
Q ss_pred hhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 006746 414 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA 493 (632)
Q Consensus 414 ~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p 493 (632)
+...+.++. +++++... .+.+.++.+.+.++|.+.|.++ |
T Consensus 250 ------~~~~~~a~~------------------------~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~------~-- 289 (360)
T TIGR00858 250 ------PPAVAAAAL------------------------AALELIQE--EPWRREKLLALIARLRAGLEAL------G-- 289 (360)
T ss_pred ------CHHHHHHHH------------------------HHHHHHhh--CHHHHHHHHHHHHHHHHHHHHc------C--
Confidence 001112222 56665543 3667889999999999999887 3
Q ss_pred cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccc
Q 006746 494 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 573 (632)
Q Consensus 494 ~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 573 (632)
++++. ..++++.+.+.+. .+...+.+.+.++||.++.+....
T Consensus 290 -~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~l~~~gI~v~~~~~~~---------------------------- 331 (360)
T TIGR00858 290 -FTLMP-----SCTPIVPVIIGDN----ASALALAEELQQQGIFVGAIRPPT---------------------------- 331 (360)
T ss_pred -CccCC-----CCCCEEEEEeCCH----HHHHHHHHHHHHCCeeEeeeCCCC----------------------------
Confidence 23332 2467777776431 234455555567899997531110
Q ss_pred cccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 574 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 574 ~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
...+...||+|++++++.+|++++++.|+
T Consensus 332 -----~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 332 -----VPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred -----CCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 01123589999999999999999998763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-18 Score=189.88 Aligned_cols=303 Identities=12% Similarity=0.190 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
....++.+++|++++|.+ + .|+|+++. .+.-.++.++ +++||+|++.. .|++ . ...++..|++++.++.
T Consensus 145 ~~~~~ele~~lA~~~g~~-~--ai~~~~G~-~an~~~i~al-~~~Gd~Vi~d~~~h~s-~----~~~~~~~Ga~v~~~~~ 214 (489)
T PLN02483 145 TKLHRELEELVARFVGKP-A--AIVFGMGY-ATNSTIIPAL-IGKGGLIISDSLNHNS-I----VNGARGSGATIRVFQH 214 (489)
T ss_pred cHHHHHHHHHHHHHhCCC-c--EEEECCHH-HHHHHHHHHh-CCCCCEEEEcchhhHH-H----HHHHHHcCCeEEEEeC
Confidence 367789999999999964 2 68887654 4444566666 78999987654 5554 2 3345778999998875
Q ss_pred cCCccccCHHHHHHHHHhc-------CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC----
Q 006746 248 SWPRLRINSEKLRKMVVSK-------GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD---- 315 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~-------~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~---- 315 (632)
+ +.+++++.+.+. +..+....++++.++.+.+|...+++ |+++|+++|+++++|.++..|..
T Consensus 215 ~------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G 288 (489)
T PLN02483 215 N------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTG 288 (489)
T ss_pred C------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCC
Confidence 3 456666665431 10111234788888999999999999 99999999999999999876431
Q ss_pred ---CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 316 ---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 316 ---m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
..-+++...++|+++.|++|.|| +.| |+++.+++.++.+.....+ . .+
T Consensus 289 ~g~~~~~~v~~~~~dI~~~SfSKs~g--~~G-G~i~~~~~li~~l~~~~~~-~---------~~---------------- 339 (489)
T PLN02483 289 RGVCELLGVDPADVDIMMGTFTKSFG--SCG-GYIAGSKELIQYLKRTCPA-H---------LY---------------- 339 (489)
T ss_pred CchHHhcCCCcccCcEEEEecchhcc--cCc-eEEEcCHHHHHHHHHhCcc-c---------cc----------------
Confidence 01134444568999999999999 667 8888887776655432110 0 00
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-C---HHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-G---LTMISR 468 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-G---l~~I~~ 468 (632)
.+ ..+.+.+++.. ++|+.+... | .....+
T Consensus 340 -------~~----------------~~~p~~~~~~~------------------------aaL~~l~~~~g~~~~~~~~~ 372 (489)
T PLN02483 340 -------AT----------------SMSPPAVQQVI------------------------SAIKVILGEDGTNRGAQKLA 372 (489)
T ss_pred -------cC----------------CcCHHHHHHHH------------------------HHHHHHHhCccccchHHHHH
Confidence 00 00011112222 567665421 1 123356
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
+.+...+++++.|.++ | +.++++. .++++.+-+.+.. -..+..++|+ ++||.+....++..
T Consensus 373 ~l~~~~~~l~~~L~~~------G---~~v~~~~----~sp~~~l~l~~~~---~~~~~~~~Ll-~~GI~v~~~~fp~~-- 433 (489)
T PLN02483 373 QIRENSNFFRSELQKM------G---FEVLGDN----DSPVMPIMLYNPA---KIPAFSRECL-KQNVAVVVVGFPAT-- 433 (489)
T ss_pred HHHHHHHHHHHHHHHC------C---CcccCCC----CCCEEEEEECCHH---HHHHHHHHHH-HCCcEEeeeCCCCC--
Confidence 7888899999999987 4 3456553 3567666655421 0123444444 56999874222110
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
....+.+|++++..+|.|||+++++.|+++++.-
T Consensus 434 -------------------------------p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 434 -------------------------------PLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred -------------------------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1123689999999999999999999999987653
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-18 Score=181.67 Aligned_cols=336 Identities=15% Similarity=0.169 Sum_probs=211.9
Q ss_pred CCceEeecCCC---CC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI---GL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (632)
Q Consensus 107 ~~~vyLD~ag~---gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~ 182 (632)
.++-|+|.++. |+ .++.+++++.+.+..... ++..+...+| .....++.++.++++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~------------------~~~~~~~~~g--~~~~~~~l~~~la~~ 96 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGA------------------GSGGSRLVTG--NSPAHEALEEELAEW 96 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCC------------------CCCCcCcccC--CcHHHHHHHHHHHHH
Confidence 45678887765 44 457788887654432100 1111111112 135678899999999
Q ss_pred cCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 183 LNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 183 l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
++.+ + .|++ +++++++..+...+ +++||+|++.. .|++ .. ..++..|++++.++. .+.+++++
T Consensus 97 ~~~~-~--~i~~-~~g~~~~~~~l~~~-~~~gd~V~~~~~~~~~-~~----~~~~~~g~~~~~~~~------~d~~~l~~ 160 (385)
T PRK05958 97 FGAE-R--ALLF-SSGYAANLAVLTAL-AGKGDLIVSDKLNHAS-LI----DGARLSRARVRRYPH------NDVDALEA 160 (385)
T ss_pred hCCC-c--EEEE-CcHHHHHHHHHHHh-CCCCCEEEEeCccCHH-HH----HHHHhcCCceEEeCC------CCHHHHHH
Confidence 9953 2 4555 45666666666666 68999987644 4443 22 234557888887754 37789999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC------CCC-CCCCCCCCcEEEEcc
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD------MDS-FGLSLVRPDFLICSF 333 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~------m~~-ldls~~~~Df~~~S~ 333 (632)
.+++.. +.+.++++.++.+.+|...|++ |+++|+++|+++++|.+|..+.- +.. .++.....++++.|+
T Consensus 161 ~i~~~~---~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~ 237 (385)
T PRK05958 161 LLAKWR---AGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTL 237 (385)
T ss_pred HHHhcc---CCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEec
Confidence 887531 1357888889999999999999 99999999999999999865420 000 133333445899999
Q ss_pred ccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhh
Q 006746 334 YQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 413 (632)
Q Consensus 334 hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~ 413 (632)
+|+|| +.| |+++.+++.++.+..... .+. + ..+
T Consensus 238 sK~~~--~~G-g~~~~~~~~~~~~~~~~~------------~~~-----------------~---~~~------------ 270 (385)
T PRK05958 238 GKALG--SSG-AAVLGSETLIDYLINRAR------------PFI-----------------F---TTA------------ 270 (385)
T ss_pred hhhcc--cCC-cEEEcCHHHHHHHHHhCc------------cce-----------------e---cCC------------
Confidence 99999 656 777766554433211000 000 0 000
Q ss_pred hhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 006746 414 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA 493 (632)
Q Consensus 414 ~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p 493 (632)
.+...+.++. ++|+.+... +.+.++.+.+.+++.+.|.++ |
T Consensus 271 -----~~~~~~aa~~------------------------aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~------~-- 311 (385)
T PRK05958 271 -----LPPAQAAAAR------------------------AALRILRRE--PERRERLAALIARLRAGLRAL------G-- 311 (385)
T ss_pred -----CCHHHHHHHH------------------------HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc------C--
Confidence 0011112222 567766543 677889999999999999887 4
Q ss_pred cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccc
Q 006746 494 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 573 (632)
Q Consensus 494 ~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 573 (632)
++++. ..++++.|.+.+. .+...+.+.+.++||.++.+....
T Consensus 312 -~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~l~~~gI~v~~~~~~~---------------------------- 353 (385)
T PRK05958 312 -FQLMD-----SQSAIQPLIVGDN----ERALALAAALQEQGFWVGAIRPPT---------------------------- 353 (385)
T ss_pred -CCcCC-----CCCCEEEEEeCCH----HHHHHHHHHHHHCCceEecccCCC----------------------------
Confidence 23332 2577888887531 233445544456799997531000
Q ss_pred cccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 574 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 574 ~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
...+..+||+|++.+++.+|++++++.|++.|
T Consensus 354 -----~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 354 -----VPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred -----CCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 01123589999999999999999999998764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=185.11 Aligned_cols=300 Identities=11% Similarity=0.050 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
..+.|+.|+++++.+ .+++++++|++..++...+...+||+|++.. .|.+ .... ...++..|++++.++.+ +
T Consensus 42 ~~~l~~~la~~~~~~----~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~-~ 114 (353)
T PLN02721 42 ALRLEEEMAKIFGKE----AALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIH-LYEN-GGISTLGGVHPRTVKNN-E 114 (353)
T ss_pred HHHHHHHHHHHhCCc----eeEEecCccHHHHHHHHHHccCCCCeEEEcCcccee-hhcc-cchhhhcCceeEecCCC-c
Confidence 568999999999985 2567778888877777766434899977653 4433 1210 01456789999999876 6
Q ss_pred ccccCHHHHHHHHHhcCc-CCCceeEEEEecc-CCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCC-CCCCCCC-
Q 006746 251 RLRINSEKLRKMVVSKGK-KKKQRGLFVFPLH-SRMTGARYP---YL-WMRIAQENDWHILIDACALGPKD-MDSFGLS- 322 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~-~~~~~~Lv~~~~~-sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~-m~~ldls- 322 (632)
++.+|+++++++|++... ..++++++++... +|.+|..+| ++ |.++|+++|+++++|+++..+.. +...+..
T Consensus 115 ~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~ 194 (353)
T PLN02721 115 DGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHR 194 (353)
T ss_pred CCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHH
Confidence 677999999999973210 0124689999775 567899888 56 88999999999999998765420 0011111
Q ss_pred -CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 323 -LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 323 -~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
..++|++++++||++|. |.| |+++.+++.++.+..... .+ .+
T Consensus 195 ~~~~~d~~~~s~sK~l~~-~~G-~~~~~~~~~~~~~~~~~~------------~~-----------------------~~ 237 (353)
T PLN02721 195 LVKAADSVSVCLSKGLGA-PVG-SVIVGSKSFIRKAKRLRK------------TL-----------------------GG 237 (353)
T ss_pred HhhhCCEEEEecccccCC-cee-eEEecCHHHHHhHHHHHH------------hc-----------------------CC
Confidence 23789999999998884 544 345555555443221100 00 00
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
.....+ +.+. .++..++.. ++.+ ++...+.+++++.|
T Consensus 238 ~~~~~~----------------~~~~-------------------------~~~~~l~~~-~~~~-~~~~~~~~~l~~~L 274 (353)
T PLN02721 238 GMRQVG----------------VLAA-------------------------AALVALQEN-VPKL-EDDHKKAKLLAEGL 274 (353)
T ss_pred CeehhH----------------HHHH-------------------------HHHHHHHHH-HHHH-HHHHHHHHHHHHHH
Confidence 000000 0000 122112111 2222 33356788999999
Q ss_pred HccCCCCCCCCCcEEE-ECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 482 MKLQHPNTEGNALVKI-YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~I-ygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
.++ +.+++ +.+ ..++++.|.+.+..+ .+...+.+.+.++||.++.+
T Consensus 275 ~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gi~v~~~------------------- 321 (353)
T PLN02721 275 NQI--------KGLRVNVAA----VETNIVYFDITDGSR--ITAEKLCKSLEEHGVLLMPG------------------- 321 (353)
T ss_pred HhC--------CCcEEecCC----ccceEEEEEccCCcc--ccHHHHHHHHHhCCcEEecC-------------------
Confidence 887 33433 332 246778887764211 24455665555889998743
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||++++++++.+||+++++.|++.++.
T Consensus 322 ---------------------~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 322 ---------------------NSSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred ---------------------CCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 2358999999999999999999999988763
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=184.44 Aligned_cols=294 Identities=17% Similarity=0.103 Sum_probs=198.5
Q ss_pred HHHHHHHHHHcCCC----CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 173 SAMKKRIMDFLNIS----ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 173 ~~~R~~ia~~l~a~----~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
++.++.++++++.. .....+++|+|+|+++..++.++ .++|++|++.. .|++ +...++..|++++.++.
T Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~-~~~g~~vl~~~~~~~~-----~~~~~~~~~~~~~~i~~ 112 (350)
T cd00609 39 PELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL-LNPGDEVLVPDPTYPG-----YEAAARLAGAEVVPVPL 112 (350)
T ss_pred HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh-CCCCCEEEEcCCCchh-----HHHHHHHCCCEEEEEec
Confidence 35666666666654 22337999999999999999999 57789977554 5543 23456778999999998
Q ss_pred cCCccccCH--HHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HH---HHHhhCCcEEEEeccccCCCCC--CC-
Q 006746 248 SWPRLRINS--EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WM---RIAQENDWHILIDACALGPKDM--DS- 318 (632)
Q Consensus 248 ~~~~~~i~~--~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~---~~a~~~g~~vlvDaaq~~g~~m--~~- 318 (632)
++ .+..+. +.++..+.+ +++++.+++.+|+||..+|++ +. ++|+++|+++++|+++..+..- ..
T Consensus 113 ~~-~~~~~~~~~~~~~~~~~------~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~ 185 (350)
T cd00609 113 DE-EGGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPP 185 (350)
T ss_pred cc-ccCCccCHHHHHhhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccc
Confidence 73 333433 444444332 468999999999999999987 65 7899999999999998763210 11
Q ss_pred --CCCCCCCCcEEEEccccccCCCCCceEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 319 --FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 319 --ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
......+.|+++.|++|++|.++.++|++++++ +..+.+..... +
T Consensus 186 ~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~--------------------------------~ 233 (350)
T cd00609 186 ALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLP--------------------------------Y 233 (350)
T ss_pred cccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHH--------------------------------h
Confidence 334567789999999998873345689999888 44443322100 0
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~ 475 (632)
. .++++.+...++. .+|+... .+++++.++++.+.+
T Consensus 234 ---~----------------~~~~~~~~~~~~~------------------------~~l~~~~-~~~~~~~~~~~~~~~ 269 (350)
T cd00609 234 ---T----------------TSGPSTLSQAAAA------------------------AALDDGE-EHLEELRERYRRRRD 269 (350)
T ss_pred ---c----------------ccCCChHHHHHHH------------------------HHHhCcH-HHHHHHHHHHHHHHH
Confidence 0 0011111222222 4444433 368889999999999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
++.+.|.++ +.. .+.. ..++..+.+.+.+. .....+.+++.++||.++.+..+..
T Consensus 270 ~l~~~L~~~------~~~--~~~~----~~~g~~~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~~~~--------- 324 (350)
T cd00609 270 ALLEALKEL------GPL--VVVK----PSGGFFLWLDLPEG----DDEEFLERLLLEAGVVVRPGSAFGE--------- 324 (350)
T ss_pred HHHHHHHhc------CCc--cccC----CCccEEEEEecCCC----ChHHHHHHHHHhCCEEEeccccccc---------
Confidence 999999987 222 2111 23455666666542 3567788899899999986532211
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
.+...||++++.. .|||+++++.|+
T Consensus 325 -------------------------~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 325 -------------------------GGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred -------------------------CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 1345999999999 999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-18 Score=184.63 Aligned_cols=169 Identities=17% Similarity=0.247 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
..+.|+.|++++|++++ +|++|+|+|+|+.+++.++ ..+|++|++.. .|+ +....++..|++++.++++..
T Consensus 68 ~~~lr~~ia~~l~~~~~--~v~~~~g~t~al~~~~~~~-~~~gd~vl~~~p~y~-----~~~~~~~~~g~~~~~v~~~~~ 139 (380)
T PRK06225 68 FPELRELILKDLGLDDD--EALITAGATESLYLVMRAF-LSPGDNAVTPDPGYL-----IIDNFASRFGAEVIEVPIYSE 139 (380)
T ss_pred hHHHHHHHHHhcCCCCC--cEEEeCCHHHHHHHHHHHh-cCCCCEEEEcCCCCc-----chHHHHHHhCceEEeeccccc
Confidence 35799999999999876 7999999999999999998 67899876543 443 223456778999999987422
Q ss_pred --ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEecccc---CCCCCCCCCC
Q 006746 251 --RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACAL---GPKDMDSFGL 321 (632)
Q Consensus 251 --~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~---~g~~m~~ldl 321 (632)
+..++++++++.++++ ++++++.+.+|+||..+| ++ |+++|+++|+++++|.++. .+.. ....+
T Consensus 140 ~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~ 212 (380)
T PRK06225 140 ECNYKLTPELVKENMDEN------TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHT-LAAEY 212 (380)
T ss_pred cCCccCCHHHHHhhcCCC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCC-chhhc
Confidence 3568999999888754 478888899999999987 66 7888999999999999852 1210 01111
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILV 358 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~ 358 (632)
. ....+++.|+.|++| +.| +|+++++++.++.+.
T Consensus 213 ~-~~~~i~~~s~SK~~g--~~G~RiG~i~~~~~l~~~~~ 248 (380)
T PRK06225 213 A-PEHTVTSYSFSKIFG--MAGLRIGAVVATPDLIEVVK 248 (380)
T ss_pred C-CCCEEEEeechhhcC--CccceeEEEecCHHHHHHHH
Confidence 1 133577889999999 557 699998877665443
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-18 Score=188.71 Aligned_cols=259 Identities=15% Similarity=0.096 Sum_probs=176.7
Q ss_pred hhHHHHHHHHHHHHHcCCC-----------CCCccEEEeCCHHHHHHHH---HhhCCCC---------------------
Q 006746 168 ESGLESAMKKRIMDFLNIS-----------ENDYGMVFTANRTSAFKLL---AESYPFM--------------------- 212 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~-----------~~ey~vvft~naT~al~lv---~~sl~~~--------------------- 212 (632)
.+++..++-+.++++++.. ++...=+||+++|+|.-.. ++..-+.
T Consensus 127 ~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~ 206 (522)
T TIGR03799 127 FTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYG 206 (522)
T ss_pred hHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhcc
Confidence 4577788888888888532 2223468899999986653 2222111
Q ss_pred -CCCeEEEe-ccccchhhHHHHHHHHhcCC---EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEecc--CCCC
Q 006746 213 -SVKNLLTV-YDYESEAVEAMIRTSEKRGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH--SRMT 285 (632)
Q Consensus 213 -~gd~ilt~-~d~~s~~v~~~~~~a~~~G~---~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~--sn~T 285 (632)
++..|+++ .+|+| + ...++..|+ +++.+|++ +++++|+++|+++|.+.. ...++++++.+. ++.|
T Consensus 207 ~~~~~v~~S~~~H~S--~---~kaa~~lglg~~~v~~vp~d-~~g~~d~~~L~~~i~~~~--~~g~~~~~vvataGtt~t 278 (522)
T TIGR03799 207 YDGLAILVSERGHYS--L---GKAADVLGIGRDNLIAIKTD-ANNRIDVDALRDKCAELA--EQNIKPLAIVGVAGTTET 278 (522)
T ss_pred CCceEEEECCCchHH--H---HHHHHHcCCCcccEEEEEeC-CCCcCCHHHHHHHHHHHH--HCCCCcEEEEEEecCcCC
Confidence 12235544 46664 2 345566777 79999998 788999999999997432 123456766654 7799
Q ss_pred ccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC-----CCCC-CCcEEEEccccccCCCCCceEEEEEeCCCc-ccc
Q 006746 286 GARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG-----LSLV-RPDFLICSFYQIFGENPSGFGCLFVKKSTV-PIL 357 (632)
Q Consensus 286 G~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld-----ls~~-~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~-~~L 357 (632)
|...|++ |+++|+++|++++||||+.++. ...+ +... ++|++++++|||++. |.|+|+|++|+... +.+
T Consensus 279 GaiDpl~eIa~i~~~~g~~lHVDaA~gg~~--~~~~~~r~~l~gle~aDSit~d~HK~l~~-P~g~G~llvr~~~~~~~~ 355 (522)
T TIGR03799 279 GNIDPLDEMADIAQELGCHFHVDAAWGGAT--LLSNTYRHLLKGIERADSVTIDAHKQLYV-PMGAGMVLFKDPALMSAI 355 (522)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEEchhhhHH--HhCHHHHHHhcCchhCCEEEEChhhcCCc-CcccEEEEEeCHHHHHHh
Confidence 9999999 9999999999999999998765 2222 3433 789999999996554 99999999997532 333
Q ss_pred CCC--CCC--CceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhh
Q 006746 358 VDN--TSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEAD 433 (632)
Q Consensus 358 ~~~--~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~ 433 (632)
.+. |.. |.. ++. +..+ + |+.++. . ..+-
T Consensus 356 ~~~~~Yl~~~~~~------------------d~~----~~~l---e-gsR~~~----------------a-l~lw----- 387 (522)
T TIGR03799 356 EHHAEYILRKGSK------------------DLG----SHTL---E-GSRPGM----------------A-MLVY----- 387 (522)
T ss_pred ccCcchhcCCCCC------------------ccc----ccee---e-cCcchH----------------H-HHHH-----
Confidence 221 100 000 000 0011 1 222211 1 1232
Q ss_pred hhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEE
Q 006746 434 SIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN 513 (632)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFn 513 (632)
.+|+.+...|++.+.+|...|++++.+.|.+. |.++|++|. .-++|+|.
T Consensus 388 -------------------~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~--------~~~el~~~p----~l~iv~Fr 436 (522)
T TIGR03799 388 -------------------AGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ--------PDFELVTEP----ELCLLTYR 436 (522)
T ss_pred -------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC--------CCeEEecCC----CccEEEEE
Confidence 78888888999999999999999999999987 779999974 46799999
Q ss_pred Ecc
Q 006746 514 VFD 516 (632)
Q Consensus 514 v~~ 516 (632)
+..
T Consensus 437 ~~p 439 (522)
T TIGR03799 437 YVP 439 (522)
T ss_pred EeC
Confidence 754
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=183.06 Aligned_cols=344 Identities=9% Similarity=0.059 Sum_probs=210.0
Q ss_pred cCCCCCCCHHHHHHHhcCC-CCCCCCCCCCCCCCccccccccccccccccccccchhHHHHH-HHHHHHHHcCCCCCCcc
Q 006746 114 YFGIGLFSYNQLHKQESSP-SHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA-MKKRIMDFLNISENDYG 191 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~-~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~-~R~~ia~~l~a~~~ey~ 191 (632)
+++-..+++.++++....+ .... .+.+.++..-|......+++ +++++++++|++ +.
T Consensus 34 ~~sen~~~p~v~~a~~~~~~~~~~------------------~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~---~a 92 (416)
T PRK13034 34 IASENFTSPAVMEAQGSVLTNKYA------------------EGYPGKRYYGGCEFVDEVEALAIERAKQLFGCD---YA 92 (416)
T ss_pred cccccCCCHHHHHHhcchhhcCCC------------------CCCCCCcccCCChHHHHHHHHHHHHHHHHhCCC---ce
Confidence 4555567899999876542 2211 12333333223323344444 777999999985 46
Q ss_pred EEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEE--EEEeccCCccccCHHHHHHHHHhcCc
Q 006746 192 MVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARV--MSAEFSWPRLRINSEKLRKMVVSKGK 268 (632)
Q Consensus 192 vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v--~~v~~~~~~~~i~~~~l~~~i~~~~~ 268 (632)
+++++|+|.|+..++.++ .++||+|+++. .|.+....+++ . ...+..+ ..++++..++.+|++++++.+...
T Consensus 93 lv~~~SG~~A~~~~l~al-~~~GD~Vl~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-- 167 (416)
T PRK13034 93 NVQPHSGSQANGAVYLAL-LKPGDTILGMSLSHGGHLTHGAK-V-SLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEH-- 167 (416)
T ss_pred EEecCCcHHHHHHHHHHh-cCCCCEEEEcCccceeeeecCCc-c-eeccceeeeEEcccccccCCcCHHHHHHHHhhc--
Confidence 678899999999999999 89999987654 45431111111 0 0012222 233343335668999999988642
Q ss_pred CCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC---CCCCCcEEEEccccccCCCCCce
Q 006746 269 KKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL---SLVRPDFLICSFYQIFGENPSGF 344 (632)
Q Consensus 269 ~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl---s~~~~Df~~~S~hK~~G~~P~G~ 344 (632)
+++++++.. ..+|...|++ |.++|+++|+++++|+||++|.- ..+. ....+|++++|+||+++. |.|
T Consensus 168 ---~~klVi~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~--~~g~~~~~~~~~Di~~~s~~K~l~g-~~G- 238 (416)
T PRK13034 168 ---KPKLIIAGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGLV--AAGEHPNPFPHAHVVTTTTHKTLRG-PRG- 238 (416)
T ss_pred ---CCeEEEECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccCc--ccCCCCCCCCCceEEEEeCcccCCC-CCC-
Confidence 247776643 3578999999 99999999999999999988651 1121 112589999999998743 766
Q ss_pred EEEEEeCCC-ccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 345 GCLFVKKST-VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 345 G~L~Vr~~~-~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
|+++.+++. ...++...+.|+.. .+..+.
T Consensus 239 G~v~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~ 268 (416)
T PRK13034 239 GMILTNDEEIAKKINSAVFPGLQG--------------------------------------------------GPLMHV 268 (416)
T ss_pred eEEEECcHHHHHHHHhhcCCcccC--------------------------------------------------CccHHH
Confidence 555555433 23333322111100 001111
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 503 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~ 503 (632)
+.++. .++..+.+.+.....+|+..++++|++.|.++ |.+ +..+.
T Consensus 269 ~aa~~------------------------~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~------G~~---~~~~~-- 313 (416)
T PRK13034 269 IAAKA------------------------VAFGEALQPEFKTYAKQVIANAQALAEVLKER------GYD---LVSGG-- 313 (416)
T ss_pred HHHHH------------------------HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc------CCE---eccCC--
Confidence 22222 33333322344566799999999999999887 544 33331
Q ss_pred CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCC
Q 006746 504 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 583 (632)
Q Consensus 504 ~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
...+++.+.+.+.+ .....+++.+.++||.+..-. -++ +. +.....
T Consensus 314 -~~t~i~~v~~~~~~---~~~~~~~~~L~~~GI~v~~~~--~p~-----------------------~~-----~~p~~~ 359 (416)
T PRK13034 314 -TDNHLLLVDLRPKG---LSGKDAEQALERAGITVNKNT--VPG-----------------------DT-----ESPFVT 359 (416)
T ss_pred -CCCcEEEEEcCCCC---CCHHHHHHHHHhCCcEEeccC--CCC-----------------------CC-----cCCCCC
Confidence 23566555554421 577778788888899886210 000 00 011123
Q ss_pred cEEEEccCCCC----CHHHHHHHHHHHHHhhh
Q 006746 584 TVVTASLGYLA----NFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 584 ~~VRvSlg~~~----t~eDV~rlv~~l~~~l~ 611 (632)
..+|+|++.+| +++||+++++.|++.+.
T Consensus 360 ~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 360 SGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred CeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 57999999955 49999999999999876
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=181.32 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=129.3
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+......+++.++++++++|++. .++| +|++.|+.++..++ +++||+|++ ...|++ ....+...++..|+++
T Consensus 57 Y~r~~~p~~~~le~~lA~l~g~~~---av~~-~sG~~Ai~~al~al-~~~Gd~Vl~~~~~y~~-t~~~~~~~~~~~G~~v 130 (389)
T PRK05968 57 YSRGDNPTVRAFEEMLAKLEGAED---ARGF-ASGMAAISSTVLSF-VEPGDRIVAVRHVYPD-AFRLFETILKRMGVEV 130 (389)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCc---EEEE-CCHHHHHHHHHHHH-hCCCCEEEEeCCCchH-HHHHHHHHHHHcCceE
Confidence 444344557789999999999962 4555 67778999888877 789999765 456665 3433455677889999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++.+ +++++++++ ++ ++++.+...++.++...|++ |+++||++|+++++|+++..+....++.
T Consensus 131 ~~vd~~------d~~~l~~~i-~~------tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~~- 196 (389)
T PRK05968 131 DYVDGR------DEEAVAKAL-PG------AKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPIT- 196 (389)
T ss_pred EEeCCC------CHHHHHHhc-cc------CCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCchh-
Confidence 988642 678888877 33 48999999999999999999 9999999999999999987764212443
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
+++|+++.|++|+++. |.+ .|+++.+++.++++
T Consensus 197 --~g~Divv~S~tK~l~g-~~~~~gG~i~~~~~~~~~l 231 (389)
T PRK05968 197 --LGVDLVIHSASKYLGG-HSDTVAGVVAGSKEHIARI 231 (389)
T ss_pred --cCCcEEEeeccccccC-CCCeEEEEEEECHHHHHHH
Confidence 5789999999997774 655 57777777655444
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=179.41 Aligned_cols=339 Identities=12% Similarity=0.053 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+.+.++++++++|++ .+++|+|+|+|+.+++.++.+++||+|++ ...|.+. . ..+...|++++.++++
T Consensus 33 ~~~~~le~~la~~~g~~----~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~-~----~~~~~~G~~~v~vd~~ 103 (379)
T PRK11658 33 PKNQALEQAFCQLTGNQ----HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVST-L----NMIVLLGATPVMVDVD 103 (379)
T ss_pred HhHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHH-H----HHHHHcCCEEEEEecC
Confidence 44678999999999995 37889999999999999998899999775 4566642 2 2345689999999998
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
+.+..+|++++++++++++ ++++..| .+|...|++ |.++|+++|+++++|++|+.|.......+..++.|
T Consensus 104 ~~~~~~d~~~l~~~i~~~t------kav~~~~---~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~ 174 (379)
T PRK11658 104 RDTLMVTPEAIEAAITPRT------KAIIPVH---YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTA 174 (379)
T ss_pred CCcCCcCHHHHHHhcccCC------eEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCE
Confidence 5566789999999987644 6766444 599999999 99999999999999999998763222235566777
Q ss_pred EEEEccccccCCCCCceEEEEEe--CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCC
Q 006746 328 FLICSFYQIFGENPSGFGCLFVK--KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 405 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr--~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f 405 (632)
+++++.+|.+.. |-|.+++. ++..+++++....|.... ... .+.... . +.+...+.|+
T Consensus 175 ~~Sf~~~K~l~~---g~GG~v~~~~~~~~~~~~~~~~~G~~~~--~~~-~~~~~~-----~------~~~~~~~~G~--- 234 (379)
T PRK11658 175 IFSFHAIKNITC---AEGGLVVTDDDELADRLRSLKFHGLGVD--AFD-RQTQGR-----A------PQAEVLTPGY--- 234 (379)
T ss_pred EEeCCCCCcCcc---cCceEEEECCHHHHHHHHHHHHcCCCcc--hhh-hhcccC-----C------Ccceeecccc---
Confidence 777777785542 44554554 345555554222222100 000 000000 0 0000001111
Q ss_pred CccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccC
Q 006746 406 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ 485 (632)
Q Consensus 406 ~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~ 485 (632)
+.++ .++. +||.+.+..+++.+.+|.+.+.+++.+.|..+
T Consensus 235 ------------n~~~---~~l~------------------------AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~- 274 (379)
T PRK11658 235 ------------KYNL---ADIN------------------------AAIALVQLAKLEALNARRREIAARYLQALADL- 274 (379)
T ss_pred ------------ccCc---CHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 0111 2232 67777766789999999999999999999877
Q ss_pred CCCCCCCCcEEEECCCCCCCCC-cEEEEEEccC-CCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhh
Q 006746 486 HPNTEGNALVKIYGPKIRFDRG-PALAFNVFDW-KREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKT 563 (632)
Q Consensus 486 h~~~~G~p~v~Iygp~~~~~rg-~ivaFnv~~~-~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~ 563 (632)
|.+.+..|.....+. .+..+.+... .| ++...+.+.+.++||.++. +|.+-..+.+... .. .
T Consensus 275 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~L~~~gI~~~~--~~~~~~~~~~~~~---~~--~ 338 (379)
T PRK11658 275 -------PFQPLSLPAWPHQHAWHLFIIRVDEERCG--ISRDALMEALKERGIGTGL--HFRAAHTQKYYRE---RF--P 338 (379)
T ss_pred -------CCccCcCCCCCCceeEEEEEEEECCcccc--CCHHHHHHHHHHCCCCCcc--cCcCcccChhhhc---cC--C
Confidence 333343443211222 4556666421 12 5677787777788998653 3332211111000 00 0
Q ss_pred hccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 564 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
...- ++ .+......|.+-+|..-|.|||+++++.|++++
T Consensus 339 ~~~~----p~----~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 339 TLSL----PN----TEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred CCCC----hH----HHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 0000 00 011123578888899999999999999999875
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-17 Score=176.33 Aligned_cols=295 Identities=14% Similarity=0.119 Sum_probs=192.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.++.+++++++++++|.+ + .|++|+| ++++..++.++ +++||.|++.. .|++ ... .++..|+++..++
T Consensus 77 ~~l~~~l~~~l~~~~g~~-~--~i~~~sG-~~a~~~a~~~~-~~~gd~vi~~~~~~~~-~~~----~~~~~g~~~~~~~- 145 (385)
T TIGR01825 77 LRLHEELEEKLAKFKKTE-A--ALVFQSG-FNTNQGVLSAL-LRKGDIVLSDELNHAS-IID----GLRLTKATKKIYK- 145 (385)
T ss_pred cHHHHHHHHHHHHHhCCC-c--EEEECcH-HHHHHHHHHHh-CCCCCEEEEEccccHH-HHH----HHHhcCCceEEeC-
Confidence 467789999999999974 2 5777766 56666777777 78999977554 4543 222 2334677775543
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC-------CCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-------MDSF 319 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-------m~~l 319 (632)
.++.+++++.|.+.. .+++++++++++.|.||...|++ +.++|+++|+++++|.++..+.- ...+
T Consensus 146 -----~~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 218 (385)
T TIGR01825 146 -----HADMDDLDRVLRENP--SYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHF 218 (385)
T ss_pred -----CCCHHHHHHHHHhhc--cCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhc
Confidence 367888888886532 23468999999999999999999 99999999999999999865421 0013
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
++. .+.|+++.|++|.+| ..| |+++.+++.++.+..... . | .
T Consensus 219 ~~~-~~~~i~~~s~sK~~~--~~g-G~~~~~~~~~~~~~~~~~-----------~-~----------------------~ 260 (385)
T TIGR01825 219 GLE-DKVDIQVGTLSKAIG--VVG-GYAAGHKELIEYLKNRAR-----------P-F----------------------L 260 (385)
T ss_pred CCC-cCCcEEEEeccHHhh--cCC-CEEecCHHHHHHHHHhCc-----------c-c----------------------c
Confidence 443 578999999999998 335 777666655544321100 0 0 0
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.++ ..+.+...++. ++|+.+.+. ..+.++.+.+.+++.+
T Consensus 261 ~~~---------------~~~~~~~~a~~------------------------~al~~~~~~--~~~~~~~~~~~~~l~~ 299 (385)
T TIGR01825 261 FST---------------AQPPAVVAALA------------------------AAVDELQRS--PELMERLWDNTRFFKA 299 (385)
T ss_pred ccC---------------CCCHHHHHHHH------------------------HHHHHHhcC--HHHHHHHHHHHHHHHH
Confidence 000 00111122332 666655432 3466778888999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHHhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQKEKDN 558 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~ 558 (632)
.|.++ |. +++.| .++++.+.+... .+...+ ++|++ +||.++.+.+..
T Consensus 300 ~L~~~------g~---~~~~~-----~~~~~~~~~~~~----~~~~~~~~~L~~-~gi~v~~~~~~~------------- 347 (385)
T TIGR01825 300 GLGKL------GY---DTGGS-----ETPITPVVIGDE----KAAQEFSRRLFD-EGIFAQSIVFPT------------- 347 (385)
T ss_pred HHHHc------CC---CCCCC-----CCCEEEEEECCH----HHHHHHHHHHHH-CCcEEcccCCCC-------------
Confidence 99887 43 33333 245666654321 123344 44555 499886442211
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+...||++++++++.|||+++++.|+++++.
T Consensus 348 --------------------~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 348 --------------------VPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred --------------------CCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 0113468999999999999999999999998754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-17 Score=175.06 Aligned_cols=297 Identities=12% Similarity=0.101 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
++.+++++.+++++|++ + .|++|++ ++++..+..++ +++||+|++. ..|++ .. ..++..|+++..++.
T Consensus 87 ~l~~~l~~~la~~~g~~-~--~i~~tsG-~~a~~~~~~~l-~~~gd~vi~~~~~~~~-~~----~~~~~~~~~~~~~~~- 155 (397)
T PRK06939 87 DLHKELEEKLAKFLGTE-D--AILYSSC-FDANGGLFETL-LGKEDAIISDALNHAS-II----DGVRLCKAKRYRYAN- 155 (397)
T ss_pred HHHHHHHHHHHHHhCCC-c--EEEEcCh-HHHHHHHHHHh-CCCCCEEEEEhhhhHH-HH----HHHHhcCCceEEeCC-
Confidence 57788999999999975 2 6888877 77888888887 7899997754 45554 22 233456777766543
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC--C-----CCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM--D-----SFG 320 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m--~-----~ld 320 (632)
.+.+++++.+++....+.++++++..++.+.+|...|++ |.++|+++|+++++|.++..+..- . ..+
T Consensus 156 -----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~ 230 (397)
T PRK06939 156 -----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFG 230 (397)
T ss_pred -----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcC
Confidence 477888888865211122568899999999999999999 999999999999999998544210 0 112
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
+. .++|++++|++|+++. +. .|+++.+++.++.+...... + . ..
T Consensus 231 ~~-~~~~i~~~S~sK~~~g-~r-~G~v~~~~~~~~~l~~~~~~------------~-----------------~----~~ 274 (397)
T PRK06939 231 VM-DRVDIITGTLGKALGG-AS-GGYTAGRKEVIDWLRQRSRP------------Y-----------------L----FS 274 (397)
T ss_pred CC-CCCcEEEEECHHHhCc-cC-ceEEEeCHHHHHHHHHhCcc------------c-----------------c----cc
Confidence 21 2579999999998852 54 59998888776555321000 0 0 00
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
++ ++.+.+.++. ++++.+.. .+.+.++.+.+.+++++.
T Consensus 275 ~~----------------~~~~~~~a~~------------------------~al~~~~~--~~~~~~~~~~~~~~l~~~ 312 (397)
T PRK06939 275 NS----------------LAPAIVAASI------------------------KVLELLEE--SDELRDRLWENARYFREG 312 (397)
T ss_pred CC----------------CCHHHHHHHH------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 00 0011112222 56666643 357788899999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
|.++ |.+ +..+ .++++.+.+.+. .+...+ ++|++ +||.+..+.+..
T Consensus 313 L~~~------~~~---~~~~-----~~~~~~~~~~~~----~~~~~~~~~L~~-~gI~v~~~~~~~-------------- 359 (397)
T PRK06939 313 MTAA------GFT---LGPG-----EHPIIPVMLGDA----KLAQEFADRLLE-EGVYVIGFSFPV-------------- 359 (397)
T ss_pred HHHc------CCC---cCCC-----CCCEEEEEECCH----HHHHHHHHHHHH-CCceEeeeCCCC--------------
Confidence 9887 322 2222 345655544321 223344 45554 599987432210
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.+.||++++++++.+||+++++.|++++.+
T Consensus 360 -------------------~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 360 -------------------VPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred -------------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 0112358999999999999999999999998765
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-17 Score=177.40 Aligned_cols=367 Identities=14% Similarity=0.130 Sum_probs=236.3
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch--hHHHHHHHHHHHHHcCCCCCCcc
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISENDYG 191 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~--~~~~~~~R~~ia~~l~a~~~ey~ 191 (632)
.++-...|+.+++++-..+... |-.+.|..++ ||+-+ .++..-+.++++++||++..++.
T Consensus 154 IASEN~~S~av~~algS~ltnk-----------------YaEG~pG~Ry-y~G~~~iD~iE~la~era~~lF~~~~~~~g 215 (586)
T PLN02271 154 IASENFVCRAVMEALGSHLTNK-----------------YSEGMPGARY-YTGNQYIDQIERLCCERALAAFGLDSEKWG 215 (586)
T ss_pred ccccccCCHHHHHHhcCccccc-----------------CCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHhCCcccccc
Confidence 3677799999999976655421 1113344443 44322 46777889999999999865442
Q ss_pred -EEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHH-H---HHHHhcCCEEEEEe--ccCCccccCHHHHHHHH
Q 006746 192 -MVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAM-I---RTSEKRGARVMSAE--FSWPRLRINSEKLRKMV 263 (632)
Q Consensus 192 -vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~-~---~~a~~~G~~v~~v~--~~~~~~~i~~~~l~~~i 263 (632)
=|-.-+++.|+..+..++ ++|||+|+. ..+|........ . ..+...|..+..++ ++..++.+|.++|++.+
T Consensus 216 aNVQp~SGs~AN~aV~~AL-l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a 294 (586)
T PLN02271 216 VNVQPYSCTSANFAVYTGL-LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKA 294 (586)
T ss_pred cceeeccHHHHHHHHHHHh-cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHh
Confidence 123349999999999999 999999875 555544222210 0 12234576666666 65577899999999855
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEEEcccccc-C
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLICSFYQIF-G 338 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls---~~~~Df~~~S~hK~~-G 338 (632)
... +++|+++.+.++. ..+|++ +.++|+++|+++++|+||.+|. +..++. ...+|+++++.||++ |
T Consensus 295 ~~~-----rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGL--Ia~g~~~sP~~~aDvvt~TTHKtLrG 365 (586)
T PLN02271 295 LDF-----RPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGL--VAAKECVNPFDYCDIVTSTTHKSLRG 365 (586)
T ss_pred hhc-----CCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccc--cccCcCCCCCcCCcEEEeCCcccCCC
Confidence 332 4699999998887 779999 9999999999999999999986 444432 236899999999955 6
Q ss_pred CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCC
Q 006746 339 ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 418 (632)
Q Consensus 339 ~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt 418 (632)
|.| |+++++++....+++. +.. |.... .. +.+.+..+. .-|.+ ..|.
T Consensus 366 --PrG-G~I~~r~~~~~~~~g~----~gs--------~s~~~-----~~-----~d~~~kI~~-aVfPg-------lqgG 412 (586)
T PLN02271 366 --PRG-GIIFYRKGPKLRKQGM----LLS--------HGDDN-----SH-----YDFEEKINF-AVFPS-------LQGG 412 (586)
T ss_pred --CCc-eEEEecccccccccCC----ccc--------ccccc-----cc-----HHHHHHhhc-ccCCc-------cccC
Confidence 999 8888888765433332 211 11000 00 011110000 01111 0233
Q ss_pred cccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEE
Q 006746 419 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 498 (632)
Q Consensus 419 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iy 498 (632)
++...|.++. .+|+.+..-....-.+++..-++.|-+.|.+. |.++|.
T Consensus 413 phn~~IAalA------------------------valkea~~~efk~Ya~QVv~NAkaLA~~L~~~------G~~vv~-- 460 (586)
T PLN02271 413 PHNNHIAALA------------------------IALKQVATPEYKAYMQQVKKNAQALASALLRR------KCRLVT-- 460 (586)
T ss_pred hhHHHHHHHH------------------------HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC------CCeEee--
Confidence 3444488887 88887765555666667777777777788776 644442
Q ss_pred CCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccccc
Q 006746 499 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 578 (632)
Q Consensus 499 gp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 578 (632)
|-. -...|-..+.. .| ++...+++++++.||.+---. . +. ++
T Consensus 461 ggT----dnHlvLvDl~~-~g--~~G~~ae~~Le~~~I~~Nkn~---i-------------------------P~---d~ 502 (586)
T PLN02271 461 GGT----DNHLLLWDLTT-LG--LTGKNYEKVCEMCHITLNKTA---I-------------------------FG---DN 502 (586)
T ss_pred CCC----CcceeeecCcc-cC--CCHHHHHHHHHHcCeEecccc---C-------------------------CC---CC
Confidence 221 23455444433 22 788999999999999873110 0 00 00
Q ss_pred CCCCCcEEEEccCCCCC----HHHHHHHHHHHHHhhh
Q 006746 579 ANLGITVVTASLGYLAN----FEDVYRLWAFVAQFLD 611 (632)
Q Consensus 579 ~~~~~~~VRvSlg~~~t----~eDV~rlv~~l~~~l~ 611 (632)
.....+.||+....+|+ ++|+..+.++|.+.++
T Consensus 503 ~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 503 GTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 22345789999877774 6899999999988877
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-17 Score=173.73 Aligned_cols=166 Identities=12% Similarity=0.189 Sum_probs=125.1
Q ss_pred HHHHHHHHHHcCCCCCCccEEE-eCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVF-TANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvf-t~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.+++++|++++ .|++ |+++++++.+++..+ .++||+|++..-+.. .....++..|++++.++.+ ++
T Consensus 72 ~~lr~~ia~~~~~~~~--~i~~~~~Ga~~~i~~~~~~~-~~~gd~vlv~~p~y~----~~~~~~~~~g~~~~~~~~~-~~ 143 (361)
T PRK00950 72 PELREALSKYTGVPVE--NIIVGGDGMDEVIDTLMRTF-IDPGDEVIIPTPTFS----YYEISAKAHGAKPVYAKRE-ED 143 (361)
T ss_pred HHHHHHHHHHhCCCHH--HEEEeCCCHHHHHHHHHHHh-cCCCCEEEEcCCChH----HHHHHHHHcCCEEEEeecC-CC
Confidence 5899999999999875 6778 788999999999888 688999876543222 2234467789999999865 45
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC--CCCCCCCCCCCCCCcE
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG--PKDMDSFGLSLVRPDF 328 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~--g~~m~~ldls~~~~Df 328 (632)
+.++++++++.++++ ++++++++.+|+||..+|++ +.++|+++|+++++|.++.. +..+.++ +...+.-+
T Consensus 144 ~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~vi 216 (361)
T PRK00950 144 FSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPL-ALEYDNLI 216 (361)
T ss_pred CCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHH-HHhcCCEE
Confidence 578999999988653 47889999999999999999 99999999999999998753 2111122 11222347
Q ss_pred EEEccccccCCCCCc--eEEEEEeCCCcc
Q 006746 329 LICSFYQIFGENPSG--FGCLFVKKSTVP 355 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G--~G~L~Vr~~~~~ 355 (632)
++.|+.|.||. .| +|+++..++.++
T Consensus 217 ~~~S~SK~~g~--~GlRiG~~~~~~~~~~ 243 (361)
T PRK00950 217 IGRTFSKVFGL--AGLRIGYGFVPEWLID 243 (361)
T ss_pred EEEeehHhhcC--chhhcchhcCCHHHHH
Confidence 77899999994 36 677776655543
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-17 Score=176.16 Aligned_cols=297 Identities=12% Similarity=0.085 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
....+.++++++++|.+ ..++++++++|+..+...+. +.+++.|++..-+|...... ++..|+++..++.
T Consensus 90 ~~~~~Le~~la~~~g~~----~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~- 160 (402)
T TIGR01821 90 IPHVELEAELADLHGKE----SALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEG----IRHSGAEKFIFRH- 160 (402)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHH----HHHcCCeEEEECC-
Confidence 45678999999999963 24556677888777777653 33566666553233322222 3457887765543
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC--------C
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS--------F 319 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~--------l 319 (632)
.|.++++++++... .++++++++.++.|++|...|++ |.++|+++|++++||.+|..|.- .+ .
T Consensus 161 -----~d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~-g~~g~g~~~~~ 232 (402)
T TIGR01821 161 -----NDVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLY-GPRGGGIAERD 232 (402)
T ss_pred -----CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCccccccc-CCCCCccchhc
Confidence 26678888776321 12468999999999999999999 99999999999999999985420 11 1
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
++. .++|+++.++-|.||. + | |++..+++.++.+.....+ |
T Consensus 233 ~~~-~~~div~~t~sKa~g~-~-G-G~i~~~~~~~~~l~~~~~~------------~----------------------- 273 (402)
T TIGR01821 233 GLM-HRIDIIEGTLAKAFGV-V-G-GYIAASRKLIDAIRSYAPG------------F----------------------- 273 (402)
T ss_pred cCC-CCCeEEEEechhhhcc-C-C-ceeecCHHHHHHHHHhCcC------------c-----------------------
Confidence 111 2579999999999994 3 4 6666565554433211000 0
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.|+ ++.+.....+.. ++|+.+.+. +.+.++.+.+.+++.+
T Consensus 274 ----~~t----------~~~~~~~~aaa~------------------------aaL~~~~~~--~~~~~~~~~~~~~l~~ 313 (402)
T TIGR01821 274 ----IFT----------TSLPPAIAAGAT------------------------ASIRHLKES--QDLRRAHQENVKRLKN 313 (402)
T ss_pred ----eec----------CcCCHHHHHHHH------------------------HHHHHhhcC--HHHHHHHHHHHHHHHH
Confidence 000 000001112222 677777654 6667778899999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
.|.++ |.+ ++++ .++++.+.+.+. ....+..++|++++||.++......
T Consensus 314 ~L~~~------g~~---~~~~-----~~~i~~i~~~~~---~~a~~~~~~L~~~~Gi~v~~~~~p~-------------- 362 (402)
T TIGR01821 314 LLEAL------GIP---VIPN-----PSHIVPVIIGDA---ALCKKVSDLLLNKHGIYVQPINYPT-------------- 362 (402)
T ss_pred HHHHc------CCC---cCCC-----CCCEEEEEeCCH---HHHHHHHHHHHhcCCEEEEeECCCC--------------
Confidence 99887 433 2222 467887765431 0112344455667899987531100
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+...||+|++.++|.+||+++++.|++.+++
T Consensus 363 -------------------~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 363 -------------------VPRGTERLRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred -------------------CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 0113358999999999999999999999998764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-17 Score=176.38 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=145.9
Q ss_pred CCceEeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
++.++||.+...+ .|+.+++++....... .+ |+- .. ..+.|+.|++++|+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~------------------------~~--Y~~--~~-~~~Lr~aia~~~~v 93 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALS------------------------GR--YDL--EL-EDDLRTLFAAQEGL 93 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHh------------------------cC--CCC--ch-HHHHHHHHHHHhCc
Confidence 5678999988764 5777888765432110 00 211 11 46899999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
+++ +|++|+|+++++.+++..+ .++||+|++. ..|+. ....++..|++++.++.+ +++.++.+++++. .
T Consensus 94 ~~e--~I~it~Gs~~ai~~~~~~l-~~~gd~Vli~~P~y~~-----~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~-~ 163 (370)
T PRK09105 94 PAD--HVMAYAGSSEPLNYAVLAF-TSPTAGLVTADPTYEA-----GWRAADAQGAPVAKVPLR-ADGAHDVKAMLAA-D 163 (370)
T ss_pred Chh--hEEEcCChHHHHHHHHHHH-cCCCCEEEEeCCChHH-----HHHHHHHcCCeEEEecCC-CCCCCCHHHHHhc-C
Confidence 876 7999999999999999998 6789997654 34442 244577899999999986 4566888888765 2
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEecccc-CCCCCCCCCCCCCCCc-EEEEccccccCC
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACAL-GPKDMDSFGLSLVRPD-FLICSFYQIFGE 339 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~-~g~~m~~ldls~~~~D-f~~~S~hK~~G~ 339 (632)
+ ++++++++..+|+||..+|.+ |.++++. +|+++++|.+.. .......+++.....+ +++.|+-|.||.
T Consensus 164 ~------~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~ 237 (370)
T PRK09105 164 P------NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGM 237 (370)
T ss_pred C------CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcC
Confidence 2 248999999999999999999 8776643 489999999752 1111012333334456 445588899994
Q ss_pred CCCc--eEEEEEeCCCccccC
Q 006746 340 NPSG--FGCLFVKKSTVPILV 358 (632)
Q Consensus 340 ~P~G--~G~L~Vr~~~~~~L~ 358 (632)
.| +|+++..++.++.+.
T Consensus 238 --~GlRiG~~v~~~~~i~~l~ 256 (370)
T PRK09105 238 --AGMRLGLAAARPDLLAKLA 256 (370)
T ss_pred --CccceeeeecCHHHHHHHH
Confidence 47 899998777665554
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-18 Score=180.18 Aligned_cols=176 Identities=11% Similarity=0.055 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+++++.+++++| + + .+++|+|+|+|+.+++.++ +.+||+|++. ..|.+. ... ...++..|++++.++.+
T Consensus 32 ~~~~~l~~~~a~~~g-~-~--~~~~~~~gt~a~~~~~~~l-~~~gd~v~~~~~~~~~~-~~~-~~~~~~~g~~~~~v~~~ 104 (338)
T cd06502 32 PTTAKLEARAAELFG-K-E--AALFVPSGTAANQLALAAH-TQPGGSVICHETAHIYT-DEA-GAPEFLSGVKLLPVPGE 104 (338)
T ss_pred HHHHHHHHHHHHHhC-C-C--eEEEecCchHHHHHHHHHh-cCCCCeEEEecCcceee-ecC-CcHHHHcCceEEeecCC
Confidence 456789999999999 3 3 5889999999999999998 7899997754 455431 111 11234479999999875
Q ss_pred CCccccCHHHHHHHHHhcCcC-CCceeEEEEeccCCCCccc---cchH-HHHHHhhCCcEEEEeccccCC----CCCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKK-KKQRGLFVFPLHSRMTGAR---YPYL-WMRIAQENDWHILIDACALGP----KDMDSF 319 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~-~~~~~Lv~~~~~sn~TG~~---~pl~-i~~~a~~~g~~vlvDaaq~~g----~~m~~l 319 (632)
.+.++.++|++++.+..+. ..+++++++++.+|. |.. .+++ |+++|+++|+++++|+++..+ .. .++
T Consensus 105 --~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~-~~~ 180 (338)
T cd06502 105 --NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALG-VAL 180 (338)
T ss_pred --CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcC-CCH
Confidence 3568999999999752110 124689999999986 644 3456 788999999999999875321 10 022
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
+.-..++|+++.|+||+||. | |.++++.+++.++.++
T Consensus 181 ~~~~~~~d~~~~s~sK~~~~-~-~g~~~~~~~~~~~~~~ 217 (338)
T cd06502 181 KTYKSGVDSVSFCLSKGGGA-P-VGAVVVGNRDFIARAR 217 (338)
T ss_pred HHHHhcCCEEEEeccccCCC-c-cceEEECCHHHHHHHH
Confidence 21124789999999999996 5 4345556666655443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=182.87 Aligned_cols=365 Identities=13% Similarity=0.102 Sum_probs=226.5
Q ss_pred ceEeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~-~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
.-|+.|--++..+.+++-.+.. .++.... .|. ..| ....++.++-+.+++++|.++
T Consensus 83 P~f~~~~~~~~~~~~~lad~l~~~~n~~~~-----~~~----------~sp--------~~~~lE~~vi~wl~~l~g~p~ 139 (490)
T PLN02880 83 PNYFAYYPSNSSVAGFLGEMLSAGLNIVGF-----SWI----------TSP--------AATELEMIVLDWLAKLLNLPE 139 (490)
T ss_pred CCeeEeccCCCcHHHHHHHHHHHhhccCCc-----ccc----------cCc--------ccHHHHHHHHHHHHHHhCCCc
Confidence 5588888888877777776432 1111100 011 122 235788899999999999985
Q ss_pred CC-----ccEEEeCCHHHHHHHHH---hhC-----CCCCCCe-EE-EeccccchhhHHHHHHHHhcCCE---EEEEeccC
Q 006746 188 ND-----YGMVFTANRTSAFKLLA---ESY-----PFMSVKN-LL-TVYDYESEAVEAMIRTSEKRGAR---VMSAEFSW 249 (632)
Q Consensus 188 ~e-----y~vvft~naT~al~lv~---~sl-----~~~~gd~-il-t~~d~~s~~v~~~~~~a~~~G~~---v~~v~~~~ 249 (632)
+- -.-+||+++|+|.-+.+ +.. .+....+ ++ ++.+-|+ .+...+.-.|+. |+.||.+.
T Consensus 140 ~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~----Sv~Kaa~~lGlg~~~v~~Vp~d~ 215 (490)
T PLN02880 140 QFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHS----ALQKACQIAGIHPENCRLLKTDS 215 (490)
T ss_pred hhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchH----HHHHHHHHcCCCHHHEEEeecCC
Confidence 31 13678999999864432 211 1111123 33 3333343 234456667874 78899873
Q ss_pred -CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCC-CC--CCCC-
Q 006746 250 -PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMD-SF--GLSL- 323 (632)
Q Consensus 250 -~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~-~l--dls~- 323 (632)
.++++++++|+++|.+.++....+-+|+-+.-+..||..-|++ |+++|+++|++++||||..++.-.. .. .+..
T Consensus 216 ~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gi 295 (490)
T PLN02880 216 STNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGV 295 (490)
T ss_pred CcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCc
Confidence 4678999999999986543334567889999999999999999 9999999999999999877653101 00 2333
Q ss_pred CCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcccc
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 403 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~ 403 (632)
.++|++++++|||++. |.|+|+|++|+... ...+.... ..|....... ..++.
T Consensus 296 e~aDSit~d~HKwl~~-P~~~g~llvr~~~~-l~~~~~~~---------~~Yl~~~~~~----------------~~~~~ 348 (490)
T PLN02880 296 EEADSFNMNAHKWFLT-NFDCSLLWVKDRNA-LIQSLSTN---------PEFLKNKASQ----------------ANSVV 348 (490)
T ss_pred hhcCEEEECchhhcCC-CccEEEEEEeCHHH-HHHHHccC---------HHHhcCcccc----------------ccCCC
Confidence 4789999999998887 99999999996321 11211111 0010000000 00111
Q ss_pred CCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHH---HHhhCHHHHHHHHH---HHHHHH
Q 006746 404 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ---VDSLGLTMISRRGR---CLINWL 477 (632)
Q Consensus 404 ~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~---~~~~Gl~~I~~r~~---~L~~~L 477 (632)
++... .+ .+. ++ .++|++ ++.+|.+.+.++++ .|++++
T Consensus 349 ~~~~~-~i--------------~~~----------------rr-----~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~ 392 (490)
T PLN02880 349 DYKDW-QI--------------PLG----------------RR-----FRSLKLWMVLRLYGVENLQSYIRNHIKLAKEF 392 (490)
T ss_pred Chhcc-Cc--------------CCC----------------Cc-----ccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 11100 00 000 00 145665 45579999999998 999999
Q ss_pred HHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC-----ccCHHHHHHHHHhCCcEEccCccCChHHHhHH
Q 006746 478 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE-----KIEPVLVQKLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 478 ~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~-----~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
.+.|.+. |.++++.|. ..++|+|.+.+.... .+...+.+++.+...|.+...
T Consensus 393 ~~~l~~~--------~~~el~~~~----~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t----------- 449 (490)
T PLN02880 393 EQLVAQD--------SRFEVVTPR----IFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHT----------- 449 (490)
T ss_pred HHHHhcC--------CCEEEecCC----ceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEE-----------
Confidence 9999876 678999874 377999998752110 011233344444444444321
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCC-HHHHHHHHHHHHHhhhh
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLAN-FEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t-~eDV~rlv~~l~~~l~~ 612 (632)
...+..++|+|++.++| .+||+++++.|.+..+.
T Consensus 450 --------------------------~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~ 484 (490)
T PLN02880 450 --------------------------VLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASK 484 (490)
T ss_pred --------------------------EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 01134599999866665 59999999999887654
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=173.55 Aligned_cols=297 Identities=11% Similarity=0.060 Sum_probs=188.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-PFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+...+.++++++++|.+ + .++|+ ++++|...++..+ .+.+++.|+...-+|.....+ .+..|+++..++.
T Consensus 90 ~~~~~~l~~~la~~~g~~-~--~~~~~-sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~----~~~~~~~~~~~~~ 161 (407)
T PRK09064 90 NHYHVELERELADLHGKE-A--ALVFT-SGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEG----IRRSRCEKHIFRH 161 (407)
T ss_pred HHHHHHHHHHHHHHhCCC-c--EEEEC-cHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHH----HHHcCCcEEEECC
Confidence 356778999999999953 2 45555 5555555444433 234565555554344423333 2445777655443
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC--------
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS-------- 318 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~-------- 318 (632)
.|.+++++++.... ..+++++++.++.+.+|...|++ |.++|+++|++++||.+|..|. +.+
T Consensus 162 ------~d~~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~-~g~~g~g~~~~ 232 (407)
T PRK09064 162 ------NDVAHLEELLAAAD--PDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGM-YGPRGGGIAER 232 (407)
T ss_pred ------CCHHHHHHHHHhcc--CCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccc-cCCCCCChHHh
Confidence 36788888886321 12468999999999999999999 9999999999999999987432 011
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhh
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 398 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 398 (632)
.++. ..+|+++.++.|.|| +.| |+++.+++.++.+.....+ | .+
T Consensus 233 ~~~~-~~~div~~t~sKa~g--~~G-G~~~~~~~~~~~l~~~~~~------------~-----------------~~--- 276 (407)
T PRK09064 233 DGLM-DRIDIIEGTLAKAFG--VMG-GYIAGSAALVDAVRSYAPG------------F-----------------IF--- 276 (407)
T ss_pred cCCC-CCCeEEEEecchhhh--ccC-ceEecCHHHHHHHHHhCcc------------c-----------------cc---
Confidence 1221 257999999999999 446 7777666655433221000 0 00
Q ss_pred hccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHH
Q 006746 399 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 478 (632)
Q Consensus 399 e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~ 478 (632)
..+. +.....+.. ++|+++.+. +...++++.+.+++.
T Consensus 277 t~~~-----------------~~~~~~aa~------------------------~al~~~~~~--~~~~~~~~~~~~~l~ 313 (407)
T PRK09064 277 TTSL-----------------PPAIAAAAL------------------------ASIRHLKES--NEERERHQERAAKLK 313 (407)
T ss_pred cCcC-----------------CHHHHHHHH------------------------HHHHHHhcC--HHHHHHHHHHHHHHH
Confidence 0000 001112222 678877664 345678899999999
Q ss_pred HHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHH-HHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 479 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQ-KLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 479 ~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~-kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
+.|.++ |.+ ++++ .++++.+.+.+. .....+. +|++++||.++.... +.
T Consensus 314 ~~L~~~------g~~---~~~~-----~~~iv~i~~~~~----~~~~~l~~~L~~~~gi~v~~~~~--p~---------- 363 (407)
T PRK09064 314 AALDAA------GIP---VMPN-----ESHIVPVMVGDP----EKCKKASDMLLEEHGIYVQPINY--PT---------- 363 (407)
T ss_pred HHHHHc------CCC---CCCC-----CCCEEEEEeCCH----HHHHHHHHHHHHhCCEEEeeECC--CC----------
Confidence 999987 433 3332 367777776431 1233444 566678999974210 00
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+...||+|++.++|.+|++++++.|++.++.
T Consensus 364 ---------------------~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 364 ---------------------VPRGTERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred ---------------------CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 0113358999999999999999999999998764
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-17 Score=174.26 Aligned_cols=169 Identities=11% Similarity=0.035 Sum_probs=131.6
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++....-.+...++|+++-|+. ..++++|++.|++.++.++ +++||+|+++. .|.+ ....+.+.+++.|++|
T Consensus 56 YsR~~nPt~~~le~~la~LEg~~----~a~~~~SGmaAi~~~~~~l-l~~GD~Vv~~~~~Yg~-t~~l~~~~l~~~Gi~v 129 (395)
T PRK08114 56 YGRRGTLTHFSLQEAMCELEGGA----GCALYPCGAAAVANAILAF-VEQGDHVLMTGTAYEP-TQDFCSKILSKLGVTT 129 (395)
T ss_pred ccCCCChhHHHHHHHHHHHhCCC----eEEEEhHHHHHHHHHHHHH-cCCCCEEEEeCCCcHH-HHHHHHHHHHhcCcEE
Confidence 33333334456788899988874 3566678999999999988 89999987654 4543 3444445678899999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALGPKDMDSF 319 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~g~~m~~l 319 (632)
.+++. .+.++++++|+++ ++||.+.+.+|++|.+.|++ |+++||++ |++++||++++.|. -+
T Consensus 130 ~~vd~------~d~~~l~~~l~~~------TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~---~~ 194 (395)
T PRK08114 130 TWFDP------LIGADIAKLIQPN------TKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV---LF 194 (395)
T ss_pred EEECC------CCHHHHHHhcCCC------ceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc---cc
Confidence 99864 3568899988765 49999999999999999999 99999998 49999999999997 37
Q ss_pred CCCCCCCcEEEEccccccCCCCC--ceEEEEEeCCCc
Q 006746 320 GLSLVRPDFLICSFYQIFGENPS--GFGCLFVKKSTV 354 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~--G~G~L~Vr~~~~ 354 (632)
+..++++|+++.|.||+++. +. +.|+++.+++.+
T Consensus 195 ~pl~~GaDivv~S~tKyl~G-hsdv~~G~v~~~~~~~ 230 (395)
T PRK08114 195 KALDFGIDISIQAGTKYLVG-HSDAMIGTAVANARCW 230 (395)
T ss_pred CHHHcCCcEEEEcCcccccC-CCcceeEEEEcCHHHH
Confidence 77778999999999995553 64 677777665543
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-17 Score=173.09 Aligned_cols=287 Identities=14% Similarity=0.148 Sum_probs=194.8
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.|++++|++++ .|++|+|+++++.+++.++ +++||+|++.. .|. .. ...++..|++++.++.+ +
T Consensus 70 ~~lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~--~~---~~~~~~~g~~~~~~~~~--~ 139 (367)
T PRK02731 70 FELKAALAEKFGVDPE--RIILGNGSDEILELLARAY-LGPGDEVIYSEHGFA--VY---PIAAQAVGAKPVEVPAK--D 139 (367)
T ss_pred HHHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHH--HH---HHHHHHcCCeEEEeccc--C
Confidence 4799999999999865 7999999999999999998 78899977653 332 22 23456789999998873 4
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccCCC----CCCCCCCC-C
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALGPK----DMDSFGLS-L 323 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~g~----~m~~ldls-~ 323 (632)
..++++++++.++++ ++++++++.+|+||..+|++ +.++++.. |+++++|.+..... ....++.- .
T Consensus 140 ~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 213 (367)
T PRK02731 140 YGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAK 213 (367)
T ss_pred CCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhh
Confidence 568999999988653 48999999999999999999 88888764 89999999854211 00112211 1
Q ss_pred CCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcccc
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 403 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~ 403 (632)
..-.+++.|+-|.||.+...+|+++++++.++.+.... ..|.
T Consensus 214 ~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~------------~~~~-------------------------- 255 (367)
T PRK02731 214 FPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVR------------QPFN-------------------------- 255 (367)
T ss_pred cCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHcc------------CCCC--------------------------
Confidence 12246677888999842223599998877665443210 0010
Q ss_pred CCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHH
Q 006746 404 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 404 ~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
.. .+... .+++.++.. .++.+.++.+.+.+++.+.|.
T Consensus 256 -~~--------------~~~~~---------------------------~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 293 (367)
T PRK02731 256 -VN--------------SLALA---------------------------AAVAALDDDAFVEKSRALNAEGMAWLTEFLA 293 (367)
T ss_pred -CC--------------HHHHH---------------------------HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 222222221 256777788888888999888
Q ss_pred ccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhh
Q 006746 483 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK 562 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~ 562 (632)
++ | +.++ | ..++.+.+.+.+. .+...+.+.+.++||.++.|.. +
T Consensus 294 ~~------g---~~~~-~----~~g~~~~i~~~~~----~~~~~~~~~L~~~gI~v~~~~~--------~---------- 337 (367)
T PRK02731 294 EL------G---LEYI-P----SVGNFILVDFDDG----KDAAEAYQALLKRGVIVRPVAG--------Y---------- 337 (367)
T ss_pred HC------C---CccC-C----CCceEEEEECCCC----CCHHHHHHHHHHCCEEEEeCCC--------C----------
Confidence 76 3 2333 2 2477888877431 4556666666678999986521 0
Q ss_pred hhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 563 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ ..+.||+|++ +.+|+++|++.|++++++
T Consensus 338 -----------------~-~~~~iRis~~---~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 338 -----------------G-LPNALRITIG---TEEENRRFLAALKEFLAA 366 (367)
T ss_pred -----------------C-CCCeEEEecC---CHHHHHHHHHHHHHHHhc
Confidence 0 1358999986 789999999999998764
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=175.41 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=129.9
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++......+..++++++++|+. +.|+|++|+ +|+.+++.++ +++||+|++ ..+|.+. ...+.+.+++.|++|
T Consensus 63 Y~r~~~pt~~~le~~la~l~g~~---~~v~fsSG~-~Ai~~al~~l-l~~Gd~VI~~~~~y~~t-~~~~~~~l~~~Gi~v 136 (437)
T PRK05613 63 YSRLTNPTVEALENRIASLEGGV---HAVAFASGQ-AAETAAILNL-AGAGDHIVTSPRLYGGT-ETLFLVTLNRLGIEV 136 (437)
T ss_pred eeCccChHHHHHHHHHHHHhCCC---eEEEeCCHH-HHHHHHHHHh-cCCCCEEEECCCccHHH-HHHHHHHHHhcCeEE
Confidence 44445567789999999999984 356666555 8888888887 789999775 4577753 333345668899999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
++++ + + .++++++++|++++ +++.+.+.+|++|...|++ |+++||++|++++||++|+.|....++
T Consensus 137 ~~vd-~-~---~d~e~l~~~l~~~t------k~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~-- 203 (437)
T PRK05613 137 TFVE-N-P---DDPESWQAAVQPNT------KAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPL-- 203 (437)
T ss_pred EEEC-C-C---CCHHHHHHhCCccC------eEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccChH--
Confidence 9997 2 2 27889999887654 7888899999999999999 999999999999999999887522233
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
.+++|++++|+||++|.+..|+|.+++.+
T Consensus 204 -~~GaDivv~S~~K~l~G~gd~~gG~vv~~ 232 (437)
T PRK05613 204 -ELGADVVVASLTKFYTGNGSGLGGVLIDG 232 (437)
T ss_pred -HhCCCEEEeeccceecCCCcceeEEEEec
Confidence 46899999999998882113568888843
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=172.34 Aligned_cols=172 Identities=13% Similarity=0.086 Sum_probs=131.8
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+.......++.++++++++|.+ ..++++++++|+.+++.++ .++||+|++. ..|++ ....+...++..|+++
T Consensus 34 y~r~~~p~~~~le~~la~l~g~~----~a~~~~sG~~Ai~~~l~~l-~~~gd~Vl~~~~~y~~-~~~~~~~~~~~~g~~~ 107 (369)
T cd00614 34 YSRIGNPTVDALEKKLAALEGGE----AALAFSSGMAAISTVLLAL-LKAGDHVVASDDLYGG-TYRLFERLLPKLGIEV 107 (369)
T ss_pred eECCCChhHHHHHHHHHHHHCCC----CEEEEcCHHHHHHHHHHHH-cCCCCEEEECCCCcch-HHHHHHHHHhhcCeEE
Confidence 44334456678999999999974 3567788899999999998 7899997754 45654 3444455667889999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
..++.+ ++++++++++++ ++++.+...+|++|...|++ |+++||++|++++||.+...|....++
T Consensus 108 ~~v~~~------d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~-- 173 (369)
T cd00614 108 TFVDPD------DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPL-- 173 (369)
T ss_pred EEeCCC------CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChh--
Confidence 888753 478888888654 48999999999999999999 999999999999999998777521233
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEeC-CCcccc
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVKK-STVPIL 357 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~-~~~~~L 357 (632)
.+++|+++.|++|.+|. +.. .|+++.++ +.++.+
T Consensus 174 -~~g~Divv~S~tK~l~g-~~~~~gG~v~~~~~~l~~~l 210 (369)
T cd00614 174 -ELGADIVVHSATKYIGG-HSDVIAGVVVGSGEALIQRL 210 (369)
T ss_pred -hhCCcEEEeccceeccC-CCCceEEEEEeCcHHHHHHH
Confidence 35789999999998873 322 67777766 444433
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=180.89 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
....+++.++++++++|++ .+++|+|+++|+.+++.++ +++||+|++. ..|.+ ....+...+++.|++++.++
T Consensus 59 ~~p~~~~le~~la~l~g~~----~~v~~ssG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~-t~~~~~~~~~~~G~~v~~vd 132 (390)
T PRK08133 59 TNPTVTMFQERLAALEGAE----ACVATASGMAAILAVVMAL-LQAGDHVVSSRSLFGS-TVSLFEKIFARFGIETTFVD 132 (390)
T ss_pred CChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEccCcchh-HHHHHHHHHHHcCcEEEEEC
Confidence 3456778999999999985 3788899999999999888 7899998754 45654 34444556678999999887
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR 325 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~ 325 (632)
.+ +.++++++|+++ +++|.+...+|++|...|++ |+++||++|+++++|.++..+....++ .++
T Consensus 133 ~~------d~~~l~~~i~~~------tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl---~~g 197 (390)
T PRK08133 133 LT------DLDAWRAAVRPN------TKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL---KLG 197 (390)
T ss_pred CC------CHHHHHHhcCcC------CeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch---hhC
Confidence 63 678898888764 48999999999999999999 999999999999999997666421233 347
Q ss_pred CcEEEEccccccCCCCCc--e-EEEEEeCCC
Q 006746 326 PDFLICSFYQIFGENPSG--F-GCLFVKKST 353 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G--~-G~L~Vr~~~ 353 (632)
+|+++.|++|++| +.| + |+++.+++.
T Consensus 198 ~Divv~S~sK~~~--g~g~~~GG~vv~~~~~ 226 (390)
T PRK08133 198 ADVVIHSATKYLD--GQGRVLGGAVVGSKEL 226 (390)
T ss_pred CcEEEeecceeec--CCcceEeEEEEcCHHH
Confidence 8999999999888 445 5 444444443
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-16 Score=171.52 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+.+++|++++|.+ + .|+|+++ ++|+..++..+. ..+|+.|++.. .|.+ .. ..++..|+++..++.+
T Consensus 92 ~~~~Le~~la~~~g~~-~--~i~~~sG-~~a~~~~i~~l~~~~~g~~vi~~~~~h~s-~~----~~~~~~g~~~~~~~~~ 162 (410)
T PRK13392 92 PHVLLERELADLHGKE-S--ALLFTSG-YVSNDAALSTLGKLLPGCVILSDALNHAS-MI----EGIRRSGAEKQVFRHN 162 (410)
T ss_pred HHHHHHHHHHHHhCCC-C--EEEECcH-HHHHHHHHHHHhcCCCCCEEEEehhhhHH-HH----HHHHHcCCeEEEEeCC
Confidence 4568999999999963 2 5666655 566665555442 34688776654 4543 22 2346678988776532
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC--------C
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS--------F 319 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~--------l 319 (632)
+.+++++.+.... ..++++|++.+++|+||...|++ +.++|+++|+++++|.++..|.- .+ .
T Consensus 163 ------d~~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~-g~~g~g~~~~~ 233 (410)
T PRK13392 163 ------DLADLEEQLASVD--PDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLY-GARGGGIAERD 233 (410)
T ss_pred ------CHHHHHHHHHhcc--CCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCc-CCCCCchhhhc
Confidence 4556666665321 23568999999999999999999 99999999999999999885430 11 1
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
++ ..++|+++.++.|.||. + | |++..+++.++.+..... .|
T Consensus 234 ~~-~~~~div~~tlsK~~g~-~-G-G~~~~~~~~~~~l~~~~~------------~~----------------------- 274 (410)
T PRK13392 234 GL-MDRIDMIQGTLAKAFGC-L-G-GYIAASADLIDFVRSFAP------------GF----------------------- 274 (410)
T ss_pred cC-CCCCcEEEEEChHhhhc-c-c-chhhcCHHHHHHHHHhCc------------ch-----------------------
Confidence 11 12579999999999995 4 4 666656555443321100 00
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.++. ..+.+...++. ++|+.+...+ ...++.+...+++++
T Consensus 275 ----~~s~----------~~~~~~~~a~~------------------------aaL~~~~~~~--~~~~~~~~~~~~l~~ 314 (410)
T PRK13392 275 ----IFTT----------ALPPAVAAGAT------------------------AAIRHLKTSQ--TERDAHQDRVAALKA 314 (410)
T ss_pred ----hccC----------cCCHHHHHHHH------------------------HHHHHHhcCH--HHHHHHHHHHHHHHH
Confidence 0000 00001112222 6787776543 344677888899999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCH-HHHHHHHHhCCcEEccCccCChHHHhHHHHhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 558 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~-~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~ 558 (632)
.|.++ |.+ ++. ..++++.+.+.+. ... +..++|++++||.++.+.. +.
T Consensus 315 ~L~~~------g~~---~~~-----~~~~~~~i~~~~~----~~~~~~~~~L~~~~GI~v~~~~~--p~----------- 363 (410)
T PRK13392 315 KLNAN------GIP---VMP-----SPSHIVPVMVGDP----TLCKAISDRLMSEHGIYIQPINY--PT----------- 363 (410)
T ss_pred HHHHc------CCC---CCC-----CCCCEEEEEeCCH----HHHHHHHHHHHHhCCEEEeeeCC--CC-----------
Confidence 99887 433 222 2456665544321 122 3444566788999974310 00
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhcccccccceeee
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTA 624 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~f~~~~~~~~~~ 624 (632)
...+...||+|++.++|.+|+++|++.|+++++.- .-..||-.+
T Consensus 364 --------------------~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~--~~~~~~~~~ 407 (410)
T PRK13392 364 --------------------VPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL--ELPRWREAA 407 (410)
T ss_pred --------------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc--CCccchhhh
Confidence 01134689999999999999999999999987642 115676443
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-16 Score=170.47 Aligned_cols=296 Identities=14% Similarity=0.090 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-CCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPF-MSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~-~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+..++.++++++++|.+ ..++|+++ ++|...+...+.. .+|+.|++...+|...+.. .+..|++++.++.
T Consensus 90 ~~~~~le~~la~~~g~~---~~~~~~SG-~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~----~~~~g~~~~~~~~- 160 (406)
T PRK13393 90 HYHVLLEAELADLHGKE---AALLFTSG-YVSNWAALSTLGSRLPGCVILSDELNHASMIEG----IRHSRAEKRIFRH- 160 (406)
T ss_pred HHHHHHHHHHHHHhCCC---cEEEeCCc-HHHHHHHHHHhhcCCCCCEEEEccchhHHHHHH----HHHcCCeEEEeCC-
Confidence 46678999999999973 25666555 5677766665532 2677777654344323333 2446788776653
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCC--------
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSF-------- 319 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~l-------- 319 (632)
.|.+++++.+...+ .+++++|++.++.+.+|...|++ |.++|+++|+++++|.+|..|. +.+.
T Consensus 161 -----~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~-~g~~G~g~~~~~ 232 (406)
T PRK13393 161 -----NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGL-YGPRGGGIAERE 232 (406)
T ss_pred -----CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccc-cCCCCCchhhhc
Confidence 36677777775321 12468999999999999999999 9999999999999999987543 1111
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
++. .++|+++.++=|.+|. + | |++..+++.++.+..... .|
T Consensus 233 ~~~-~~~~i~~~tlsKa~g~-~-G-G~~~~~~~~~~~l~~~~~------------~~----------------------- 273 (406)
T PRK13393 233 GLA-DRLTIIEGTLAKAFGV-M-G-GYITGSAALCDFIRSFAS------------GF----------------------- 273 (406)
T ss_pred CCC-CCCeEEEEeCchhhcc-c-C-ceeeCCHHHHHHHHHhCc------------Cc-----------------------
Confidence 121 2368888999999994 3 4 665545544333321000 00
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.|+ ++.+.+...+.. ++|+++.+.+.. ..+.+.+.++|++
T Consensus 274 ----~~t----------~~~~p~~~aa~~------------------------aaL~~~~~~~~~--~~~~~~~~~~l~~ 313 (406)
T PRK13393 274 ----IFT----------TSLPPAVAAGAL------------------------ASVRHLKASSAE--RERHQDRVARLRA 313 (406)
T ss_pred ----eec----------CccCHHHHHHHH------------------------HHHHHHhhCHHH--HHHHHHHHHHHHH
Confidence 000 000111122222 678877654322 3567788899999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHH-HHHHhCCcEEccCccCChHHHhHHHHhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQ-KLADRENISLSYGSLHHIWFSDKYQKEKDN 558 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~-kla~~~gI~lr~G~~c~~~~~~~~~~~~~~ 558 (632)
.|.++ |.+.+ + ..++++.+.+.+. .....+. +|++++||.++.+.+ +.
T Consensus 314 ~L~~~------g~~~~----~----~~~~i~~v~~~~~----~~~~~l~~~L~~~~Gi~v~~~~~--p~----------- 362 (406)
T PRK13393 314 RLDKA------GIPHL----P----NPSHIVPVMVGDP----VLCKQISDELLDRYGIYVQPINY--PT----------- 362 (406)
T ss_pred HHHHc------CCCcC----C----CCCCeEEEEeCCH----HHHHHHHHHHHHhCCEEEEeECC--CC-----------
Confidence 99887 43322 1 2567777755331 1223444 455667999975310 00
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+...||+|++.++|.+||+++++.|+++++.
T Consensus 363 --------------------~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 363 --------------------VPRGTERLRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred --------------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 0123358999999999999999999999998764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-16 Score=168.97 Aligned_cols=295 Identities=14% Similarity=0.157 Sum_probs=190.5
Q ss_pred HHHHHHHHH----cC--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDF----LN--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~----l~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.++++ +| ++++ +|++|+|+++|+.+++..+ +++||+|++. ..|+. . ...++..|++++.++
T Consensus 65 ~lr~~la~~~~~~~~~~~~~~--~i~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~-~----~~~~~~~g~~~~~v~ 136 (382)
T PRK06108 65 ELREALARYVSRLHGVATPPE--RIAVTSSGVQALMLAAQAL-VGPGDEVVAVTPLWPN-L----VAAPKILGARVVCVP 136 (382)
T ss_pred HHHHHHHHHHHHHhCCCcCcc--eEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCccc-h----HHHHHHCCCEEEEee
Confidence 445555554 57 5554 7999999999999999988 6889997654 44542 1 234577899999999
Q ss_pred ccCC--ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccCCC-----C
Q 006746 247 FSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALGPK-----D 315 (632)
Q Consensus 247 ~~~~--~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~g~-----~ 315 (632)
.+.. +..++.++|++.++++ +++++++..+|+||..+|. + |+++|+++|+++++|.+..... .
T Consensus 137 ~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~ 210 (382)
T PRK06108 137 LDFGGGGWTLDLDRLLAAITPR------TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGR 210 (382)
T ss_pred CCCCCCCccCCHHHHHHhcCcc------ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCC
Confidence 8632 3458999999888643 4889999999999999975 5 6788999999999998744211 0
Q ss_pred C-CCCCCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 316 M-DSFGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 316 m-~~ldls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
. ..+++.. .+-.+++.|+.|.||.+...+|+++++++.++.+...... . +
T Consensus 211 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~---------~--~----------------- 262 (382)
T PRK06108 211 APSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEY---------N--T----------------- 262 (382)
T ss_pred CCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHh---------c--c-----------------
Confidence 0 0123322 2346889999999984223379999887766544321000 0 0
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.+.+.+ ...+. ..+|+...+ -++.+.++.+.+
T Consensus 263 ------~~~~~~-----------------~q~a~------------------------~~~l~~~~~-~~~~~~~~~~~~ 294 (382)
T PRK06108 263 ------SCVAQF-----------------VQRAA------------------------VAALDEGED-FVAELVARLRRS 294 (382)
T ss_pred ------cCCChH-----------------HHHHH------------------------HHHHhCChH-HHHHHHHHHHHH
Confidence 000000 00000 022221111 146677888888
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEE-EEEEccCCCCccCH-HHHHHHHHhCCcEEccCccCChHHHhH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL-AFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~iv-aFnv~~~~G~~i~~-~~V~kla~~~gI~lr~G~~c~~~~~~~ 551 (632)
.+++++.|.++ +.++++.| .++.+ -+.+.+. .+. +.++++++++||.++.|..+.
T Consensus 295 ~~~l~~~L~~~--------~~~~~~~p-----~~g~~~~~~l~~~----~~~~~~~~~ll~~~gV~v~pg~~f~------ 351 (382)
T PRK06108 295 RDHLVDALRAL--------PGVEVAKP-----DGAMYAFFRIPGV----TDSLALAKRLVDEAGLGLAPGTAFG------ 351 (382)
T ss_pred HHHHHHHHHhC--------CCCcccCC-----CeeEEEEEeCCCC----CCHHHHHHHHHHhCCEEEeCchhhC------
Confidence 89999999876 44666554 24443 3444331 233 344567788999998763211
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.+.||+|++. +.++++..++.|++++.
T Consensus 352 ----------------------------~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 352 ----------------------------PGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred ----------------------------CCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 1134699999998 89999999999988763
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-16 Score=171.52 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
....+..+++|+++.|++ ..++++|++.|+.+++.++ .++||+|++ ...|.+ ....+...+++.|++++.++
T Consensus 68 ~p~~~~Le~~lA~l~g~~----~av~~sSG~aAi~~al~al-l~~Gd~Vv~~~~~y~~-t~~~~~~~l~~~Gi~v~~vd- 140 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGV----AALLLASGQAAETFAILNL-AGAGDHIVSSPRLYGG-TYNLFHYTLPKLGIEVSFVE- 140 (436)
T ss_pred CchHHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEeCCcchH-HHHHHHHHhhcCeEEEEEEC-
Confidence 344568899999999985 2577789999999999888 789999775 445543 44444555677899988885
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+ + .++++++++|+++ +++|.+.+.+|++|...|++ |+++||++|+.++||+++..|....++ ++++
T Consensus 141 d-~---~d~e~l~~ai~~~------tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl---~~Ga 207 (436)
T PRK07812 141 D-P---DDLDAWRAAVRPN------TKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPL---EHGA 207 (436)
T ss_pred C-C---CCHHHHHHhCCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCch---hcCC
Confidence 2 2 2788898888764 48999999999999999999 999999999999999999887532233 4689
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCC
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
|+++.|+||++|..-..+|.+++....
T Consensus 208 Divv~S~tK~lgg~G~~i~G~vv~~~~ 234 (436)
T PRK07812 208 DIVVHSATKYLGGHGTAIAGVIVDGGT 234 (436)
T ss_pred CEEEEecccccCCCCCeEEEEEEcCCc
Confidence 999999999888311237888886543
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=171.80 Aligned_cols=167 Identities=10% Similarity=0.139 Sum_probs=122.6
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC-CeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-KNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g-d~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
.+.|+++++++|++++ +|++|+|+++++.+++.++ .++| |+|++.. .|. .....++..|++++.+|.+ .
T Consensus 63 ~~Lr~aia~~~~~~~~--~I~it~Gs~~~i~~~~~~~-~~~g~d~vlv~~P~y~-----~y~~~~~~~g~~v~~v~~~-~ 133 (354)
T PRK04635 63 PELINAYSAYAGVAPE--QILTSRGADEAIELLIRAF-CEPGQDSIACFGPTYG-----MYAISAETFNVGVKALPLT-A 133 (354)
T ss_pred HHHHHHHHHHhCcCHH--HEEEeCCHHHHHHHHHHHh-cCCCCCeEEEcCCChH-----HHHHHHHHcCCEEEEEecC-C
Confidence 5789999999999886 7999999999999999998 5677 7876543 332 1234567899999999986 4
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh-CCcEEEEeccccCCC-CCCCCCCCC-CCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE-NDWHILIDACALGPK-DMDSFGLSL-VRP 326 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~-~g~~vlvDaaq~~g~-~m~~ldls~-~~~ 326 (632)
++.++.+.++ .+ + +++++.+++.+|+||..+|.+ +.++++. .++++++|.+..--. +....++.. .+-
T Consensus 134 ~~~~~~~~l~-~~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~ 205 (354)
T PRK04635 134 DYQLPLDYIE-QL-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPN 205 (354)
T ss_pred CCCCCHHHHH-hc-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCC
Confidence 5667888776 33 2 358999999999999999999 8888875 369999999853211 000111111 111
Q ss_pred cEEEEccccccCCCCCc--eEEEEEeCCCccccC
Q 006746 327 DFLICSFYQIFGENPSG--FGCLFVKKSTVPILV 358 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~ 358 (632)
=+++.||+|+||. .| +|+++++++.++.+.
T Consensus 206 ~iv~~S~SK~~~l--~GlRlG~~i~~~~~~~~l~ 237 (354)
T PRK04635 206 LVVLRTLSKAFAL--AGARCGFTLANEELIEILM 237 (354)
T ss_pred EEEEechHHHhhh--hHHHHhhhhCCHHHHHHHH
Confidence 2578899999994 46 699998887765553
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=177.81 Aligned_cols=168 Identities=11% Similarity=0.082 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+++.++++++++|++. .+.++|++.|+.+++.++ +++||+|++....+.....+....++..|++++.++.+
T Consensus 64 ~p~~~~le~~lA~l~g~~~----~i~~~sG~~Al~~~l~~l-l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 138 (403)
T PRK07503 64 NPTLALLEQRMASLEGGEA----AVALASGMGAITATLWTL-LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT 138 (403)
T ss_pred CchHHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHH-cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC
Confidence 3456789999999999962 455668899999999888 89999987654333324444455667889999988763
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
++++++++++++ +++|.+...+|+||...|++ |+++|+++|+++++|.++..|....+++ +++|
T Consensus 139 ------d~~~l~~~i~~~------tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~---~g~D 203 (403)
T PRK07503 139 ------DPAALKAAISDK------TRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLE---LGAD 203 (403)
T ss_pred ------CHHHHHHhcCcc------CcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchh---hCCC
Confidence 678899888764 48999999999999999999 9999999999999999987764212442 5889
Q ss_pred EEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 328 FLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
+++.|++|++|. +.+ .|+++.+++.++++
T Consensus 204 i~v~S~tK~l~g-~gd~~gG~v~~~~~l~~~l 234 (403)
T PRK07503 204 LVVHSATKYLGG-HGDITAGLVVGGKALADRI 234 (403)
T ss_pred EEEccccccccC-CCceeEEEEEcCHHHHHHH
Confidence 999999998883 333 67777655554444
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-16 Score=172.33 Aligned_cols=308 Identities=10% Similarity=0.103 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.+...+.+++|+++++.+ + .|+|+++.+ ++..++.++ .++||.|+....+|..... ..+-.|++++.++.+
T Consensus 153 ~~~~~~Lee~La~~~~~~-~--~i~~s~G~~-a~~sai~a~-~~~gd~Ii~d~~~H~s~~~----~~~ls~~~~~~~~~n 223 (481)
T PLN02822 153 IDVHLDCETKIAKFLGTP-D--SILYSYGLS-TIFSVIPAF-CKKGDIIVADEGVHWGIQN----GLYLSRSTIVYFKHN 223 (481)
T ss_pred HHHHHHHHHHHHHHhCCC-C--EEEECCHHH-HHHHHHHHh-CCCCCEEEEeCCccHHHHH----HHHHcCCeEEEECCC
Confidence 466779999999999975 2 688887766 567788888 5789988876555542222 233457888888654
Q ss_pred CCccccCHHHHHHHHHhcCcC---CCc-eeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC-------C
Q 006746 249 WPRLRINSEKLRKMVVSKGKK---KKQ-RGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-------M 316 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~---~~~-~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-------m 316 (632)
+.++++..+.+..+. +++ ++++++..+.+.+|.+.|++ |+++|+++|+++++|-++..|.- .
T Consensus 224 ------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~ 297 (481)
T PLN02822 224 ------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLS 297 (481)
T ss_pred ------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChH
Confidence 345555555431110 122 37999999999999999999 99999999999999999875430 0
Q ss_pred CCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 317 DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
.-++++...+|+++.|+.|.+| +.| |+++.+++.++.+..... +.
T Consensus 298 e~~~v~~~~~dii~~s~sKalg--~~G-G~i~g~~~ii~~~~~~~~-~~------------------------------- 342 (481)
T PLN02822 298 EHFGVPIEKIDIITAAMGHALA--TEG-GFCTGSARVVDHQRLSSS-GY------------------------------- 342 (481)
T ss_pred HHcCCCCCCCeEEEecchhhhh--hCC-eEEEcCHHHHHHHHhcCC-ce-------------------------------
Confidence 1234433478999999999999 557 888877776654432110 00
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
.|+ .+.|...+.. ..++|+.+.. .+.+.++.+.++++
T Consensus 343 -------~fs------------a~lPp~~~~A----------------------a~~aL~~l~~--~~~~~~~l~~~~~~ 379 (481)
T PLN02822 343 -------VFS------------ASLPPYLASA----------------------AITAIDVLED--NPSVLAKLKENIAL 379 (481)
T ss_pred -------eec------------cccCHHHHHH----------------------HHHHHHHHHh--CHHHHHHHHHHHHH
Confidence 000 0001110000 0156666543 25677899999999
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc-----cCHHHHHHHHHhCCcEEccCccCChHHHhH
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-----IEPVLVQKLADRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~-----i~~~~V~kla~~~gI~lr~G~~c~~~~~~~ 551 (632)
+++.|.++ +.+.+..+ ..++++.+.+.+..+.. ...+.+++|++++||.+..+..-..
T Consensus 380 l~~~L~~~--------~g~~~~~~----~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~----- 442 (481)
T PLN02822 380 LHKGLSDI--------PGLSIGSN----TLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTL----- 442 (481)
T ss_pred HHHHHHhc--------CCcccCCC----CCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCc-----
Confidence 99999886 33444333 35788888886431211 1234566777788999875421100
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
........+|++++..+|.+||+++++.|++++.+
T Consensus 443 --------------------------~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 443 --------------------------DKCRLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred --------------------------CCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 00112347999999999999999999999988765
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-16 Score=169.45 Aligned_cols=214 Identities=13% Similarity=0.086 Sum_probs=149.4
Q ss_pred CceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 108 ~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
+.++|+-+... +.|..+.+++.+++...... .| ..+. | ..++.+.+++.+++++|++
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~-------------~Y--~~~~-----G--~~~lr~~~~~~l~~~~g~~ 85 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLANPENH-------------KY--QAVQ-----G--IPPLLEAITQKLQQDNGIE 85 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCCCCC-------------CC--CCCC-----C--CHHHHHHHHHHHHHHhCCC
Confidence 46777766654 46777888776543211000 00 0000 1 2367788899999999985
Q ss_pred CC-CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 187 EN-DYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 187 ~~-ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
.+ +..|++|+|+++|+.+++.++ +.+||+|++. ..|.. + ...++..|++++.++.+ .+..++.+++++.++
T Consensus 86 ~~~~~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~--~---~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~ 158 (389)
T PRK05957 86 LNNEQAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFN--H---EMAITMAGCQPILVPTD-DNYQLQPEAIEQAIT 158 (389)
T ss_pred CCCCCeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcC--H---HHHHHhcCCEEEEeecC-CCCCcCHHHHHHhcC
Confidence 33 347999999999999999888 7899997764 34442 1 12346689999999986 556799999999886
Q ss_pred hcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEecccc--C--CCCCCC-CCC-CCCCCcEEEEccc
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACAL--G--PKDMDS-FGL-SLVRPDFLICSFY 334 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~--~--g~~m~~-ldl-s~~~~Df~~~S~h 334 (632)
++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.+.. . +..+.+ ..+ ....--+++.|+-
T Consensus 159 ~~------~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 232 (389)
T PRK05957 159 PK------TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLS 232 (389)
T ss_pred cC------ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecch
Confidence 54 489999999999999998 77 8899999999999999732 1 111011 111 1122347888999
Q ss_pred cccCCCCCc--eEEEEEeCCCccccC
Q 006746 335 QIFGENPSG--FGCLFVKKSTVPILV 358 (632)
Q Consensus 335 K~~G~~P~G--~G~L~Vr~~~~~~L~ 358 (632)
|.+| +.| +|++++.++.++.+.
T Consensus 233 K~~g--~~GlRiG~~~~~~~~~~~~~ 256 (389)
T PRK05957 233 KAYG--FASWRIGYMVIPIHLLEAIK 256 (389)
T ss_pred hhcc--CccceeEEEecCHHHHHHHH
Confidence 9999 448 899998777665443
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-16 Score=168.32 Aligned_cols=156 Identities=10% Similarity=0.051 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
....+.+++|+++. .+ +.++++|+++|+.+++.++ +++||+|++.. .|+. ........+++.|++++.++.+
T Consensus 51 p~~~~Le~~lA~l~--~~---~~v~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~-~~~~~~~~l~~~G~~v~~v~~~ 123 (366)
T PRK07582 51 PTWRALEAALGELE--GA---EALVFPSGMAAITAVLRAL-LRPGDTVVVPADGYYQ-VRALAREYLAPLGVTVREAPTA 123 (366)
T ss_pred ccHHHHHHHHHHHc--CC---CEEEECCHHHHHHHHHHHh-cCCCCEEEEeCCCcHh-HHHHHHHHHhcCeEEEEEECCC
Confidence 34568899999998 22 3566778889999999988 89999987654 4443 3333334456789999999875
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
+.. + .+.+ +++|+.+...+|+||...|++ |+++||++|+.++||.++..+....+++ +++|
T Consensus 124 -~~~----~----~~~~------~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~g~D 185 (366)
T PRK07582 124 -GMA----E----AALA------GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---LGAD 185 (366)
T ss_pred -ChH----H----Hhcc------CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---cCCc
Confidence 111 1 2222 358999999999999999999 9999999999999999875433223554 4789
Q ss_pred EEEEccccccCCCCCce--EEEEEeC
Q 006746 328 FLICSFYQIFGENPSGF--GCLFVKK 351 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~--G~L~Vr~ 351 (632)
+++.|++|+++. |.|+ |+++.++
T Consensus 186 ivv~S~sK~l~G-~~g~~~G~v~~~~ 210 (366)
T PRK07582 186 LVVASDTKALTG-HSDLLLGYVAGRD 210 (366)
T ss_pred EEEecccccccC-CCCeeEEEEEcCc
Confidence 999999997754 6674 7777653
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-16 Score=170.24 Aligned_cols=166 Identities=12% Similarity=0.035 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
......+++++++.|+. .+++++|+++|+..++.++ +++||+|++ ...|++ ....+....++.|+++..++..
T Consensus 50 Pt~~~lE~~lA~l~g~~----~~~~~~sG~~Ai~~al~al-l~~GD~Vl~~~~~y~~-t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 50 LTHFALQDAMCELEGGA----GCYLYPSGLAAVTNSILAF-VKAGDHVLMVDSAYEP-TRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred ccHHHHHHHHHHHhCCC----cEEEECcHHHHHHHHHHHh-cCCCCEEEEcCCCcHH-HHHHHHHHHHhcCcEEEEECCC
Confidence 34457899999999974 4788999999999999999 899999875 446654 3333334456789998877542
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
+.++++++++++ ++++++.+.+|++|.+.|++ |+++|+++|++++||.+++.|....++ ++++|
T Consensus 124 ------~~e~l~~~i~~~------tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl---~~gaD 188 (377)
T TIGR01324 124 ------IGEDIATLIQPN------TKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL---EHGVD 188 (377)
T ss_pred ------CHHHHHHhcCCC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc---ccCce
Confidence 226788887764 48999999999999999999 999999999999999999988632233 46899
Q ss_pred EEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 328 FLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
+++.|++|++|. +.+ .|+++.+++.++.+
T Consensus 189 ivv~S~tK~l~G-~~d~~gG~v~~~~~~~~~l 219 (377)
T TIGR01324 189 ISIQAGTKYLVG-HSDIMIGTVVANARTWDQL 219 (377)
T ss_pred EEEecCceeccC-CCCceEEEEEeCHHHHHHH
Confidence 999999998774 444 46677666554433
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-16 Score=170.25 Aligned_cols=214 Identities=13% Similarity=0.171 Sum_probs=153.3
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
.+.+|+++.|.+++|+.+++++.+++... .|+.-....| .....++.+++.+++++|+.
T Consensus 80 tg~v~~tNlg~s~l~~~vieAv~~~~~~y--------------------~~l~~~l~~g-~~g~r~~~le~~lA~l~gae 138 (454)
T TIGR00474 80 TGVVLHTNLGRAPLAEEAIEAVTDAARGY--------------------SNLEYDLETG-KRGSRYSHVEGLLCELTGAE 138 (454)
T ss_pred CCcEEeccCCCCCCCHHHHHHHHHHHhcc--------------------cchhcccccc-ccchHHHHHHHHHHHHhCCC
Confidence 45789999999999999999987654321 1221000011 12356789999999999996
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-ccc--chhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYE--SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~--s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
. .+ +++|++.|+.+++.. +.+||+|+++. +|. ..+. .+.+..++.|++++.++.+ ...+.++++++|
T Consensus 139 ~---al-vv~sg~aAi~l~l~~--l~~GdeVIvs~~e~v~~ggs~-~i~~~~~~~G~~~~~v~~~---~~~~l~dle~aI 208 (454)
T TIGR00474 139 D---AL-VVNNNAAAVLLALNT--LAKGKEVIVSRGELVEIGGSF-RIPDVMEQSGAKLVEVGTT---NRTHLKDYEDAI 208 (454)
T ss_pred c---EE-EECCHHHHHHHHHHH--hCCcCEEEECCChhhhhcchh-hHHHHHHHcCCEEEEeCCC---CCCCHHHHHHhc
Confidence 3 34 567888899988865 57899987654 432 1111 1233457789999988653 235789999999
Q ss_pred HhcCcCCCceeEEEEeccCCCC--c--cccchH-HHHHHhhCCcEEEEecccc---------CCCCCCCCCCCCCCCcEE
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMT--G--ARYPYL-WMRIAQENDWHILIDACAL---------GPKDMDSFGLSLVRPDFL 329 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~T--G--~~~pl~-i~~~a~~~g~~vlvDaaq~---------~g~~m~~ldls~~~~Df~ 329 (632)
+++| +++.+.|.+|++ | ...|++ |+++||++|+++++|+++. ++......+.-++++|++
T Consensus 209 ~~~T------~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv 282 (454)
T TIGR00474 209 TENT------ALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLV 282 (454)
T ss_pred CcCC------EEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEE
Confidence 7754 899999999984 6 478999 9999999999999998621 122100124456799999
Q ss_pred EEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 330 ICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 330 ~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
++|+||++|. | ..|+++.+++.++.++.
T Consensus 283 ~fSg~K~LgG-p-~~G~i~g~~~~i~~l~~ 310 (454)
T TIGR00474 283 TFSGDKLLGG-P-QAGIIVGKKELIERLKK 310 (454)
T ss_pred EecCccccCC-C-eEEEEEECHHHHHhhhh
Confidence 9999998874 6 58999999988776654
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-16 Score=166.42 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=142.2
Q ss_pred CCceEeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
++.++|+.+...+ .|..+.+++.+.+... . ..|... . ..+.|+.|++++++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~----------------------~---~~y~~~--~-~~~lr~aia~~~~~ 75 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDD----------------------L---RLYPDP--N-ADALRQAIAAYYGL 75 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhh----------------------h---hcCCCC--c-HHHHHHHHHHHhCC
Confidence 4578888777665 3667777765433210 0 001110 1 25899999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
+++ +|++|+|+++|+.+++.++ +++||+|++.. .|+ .....++..|++++.++.+ +++.+|.+++++
T Consensus 76 ~~~--~I~it~G~~~al~~~~~~l-~~~gd~vlv~~P~y~-----~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~--- 143 (353)
T PRK05387 76 DPE--QVFVGNGSDEVLAHAFLAF-FNHDRPLLFPDITYS-----FYPVYAGLYGIPYEEIPLD-DDFSIDVEDYLR--- 143 (353)
T ss_pred CHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEeCCCHH-----HHHHHHHHcCCEEEEeecC-CCCCCCHHHHHh---
Confidence 876 7999999999999999998 78999977543 443 2234467789999999986 556788888752
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC-CcEEEEecccc--CCCCCCCCCCCCCCCcEEEEccccccCCC
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN-DWHILIDACAL--GPKDMDSFGLSLVRPDFLICSFYQIFGEN 340 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~-g~~vlvDaaq~--~g~~m~~ldls~~~~Df~~~S~hK~~G~~ 340 (632)
. +++++++..+|+||..+|.+ +.++++.. ++++++|.+.. .+....++ ++..+-.+++.|+.|.+|.+
T Consensus 144 -~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~ 215 (353)
T PRK05387 144 -P------NGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPL-IDRYPNLLVVQTFSKSRSLA 215 (353)
T ss_pred -c------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHH-HhhCCCEEEEEehhHhhcch
Confidence 2 26789999999999999999 98888765 99999998642 12110111 12234479999999998852
Q ss_pred CCceEEEEEeCCCcccc
Q 006746 341 PSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 341 P~G~G~L~Vr~~~~~~L 357 (632)
.-.+|+++..++.++.+
T Consensus 216 GlR~G~~~~~~~~~~~l 232 (353)
T PRK05387 216 GLRVGFAIGHPELIEAL 232 (353)
T ss_pred hhhceeeecCHHHHHHH
Confidence 22378888776655444
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=167.94 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
....+...++|+++.|+. ..++|+|+++|+..++.++ +++||+|++. ..|+. ....+...+++.|++++.++.
T Consensus 63 ~p~~~~Le~~lA~leg~~----~al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~~y~~-t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGI----GALAVSSGQAAITYSILNI-ASAGDEIVSSSSLYGG-TYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred CchHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEccCchhh-HHHHHHHHHHhCCEEEEEECC
Confidence 344567889999999974 4678899999999999888 7899998754 45554 444556677889999998875
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
.++++++++|+++ +++|.+.+.+|+||...|++ |+++||++|+++++|.++..|.. ..++ ++++
T Consensus 137 ------~d~e~l~~ai~~~------tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~--~~pl-~~ga 201 (431)
T PRK08248 137 ------SDPENFEAAITDK------TKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL--LRPI-EHGA 201 (431)
T ss_pred ------CCHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc--CChh-HcCC
Confidence 3778999888764 48999999999999999999 99999999999999999887653 2333 4799
Q ss_pred cEEEEccccccCCCCCc--eEEEEEeCC
Q 006746 327 DFLICSFYQIFGENPSG--FGCLFVKKS 352 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G--~G~L~Vr~~ 352 (632)
|+++.|+||++|. | | +|.+++.+.
T Consensus 202 Divv~S~tK~lgg-~-g~~~Gg~v~~~~ 227 (431)
T PRK08248 202 DIVVHSATKFIGG-H-GTSIGGVIVDSG 227 (431)
T ss_pred CEEEEcCccccCC-C-CCceEEEEEeCC
Confidence 9999999999984 3 5 788888644
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-16 Score=168.93 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=127.0
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++....-.+..+++++++.|+. .+++|+|+++|+.++..++ +++||+|++.. .|.+ .+..+....++.|+++
T Consensus 47 Y~R~~npt~~~Le~~lA~leg~e----~ivvt~gg~~Ai~~~l~al-l~~Gd~Il~~~~~y~~-~~~~~~~~~~~~gi~v 120 (388)
T PRK08861 47 YTRSGNPNRGLLEQTLSELESGK----GAVVTNCGTSALNLWVSAL-LGPDDLIVAPHDCYGG-TYRLFNTRANKGDFKV 120 (388)
T ss_pred ccCCCCchHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCCchHH-HHHHHHHHHhcCCeEE
Confidence 33333344568899999999963 6999999999999999998 78999987654 4543 2333334455678888
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
..++. .+.++++++++++ ++++.+...+|+||..+|++ |.++|+++|++++||.++..|..-.+++
T Consensus 121 ~~vd~------~d~e~l~~~i~~~------tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~- 187 (388)
T PRK08861 121 QFVDQ------SDAAALDAALAKK------PKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLE- 187 (388)
T ss_pred EEECC------CCHHHHHHhcCcC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcc-
Confidence 88752 4778898888764 48999999999999999999 9999999999999999988774223554
Q ss_pred CCCCCcEEEEccccccCCCCCc-e-EEEEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG-F-GCLFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G-~-G~L~Vr~ 351 (632)
+++|+++.|+||++|. |.+ + |++..++
T Consensus 188 --~GaDivv~S~tK~l~G-~~d~~gG~i~~~~ 216 (388)
T PRK08861 188 --LGADFVIHSTTKYING-HSDVIGGVLITKT 216 (388)
T ss_pred --cCCCEEEeecceeccC-CCcceeEEEEecH
Confidence 4899999999997764 544 3 4444443
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-16 Score=166.33 Aligned_cols=282 Identities=15% Similarity=0.173 Sum_probs=185.2
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCcc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRL 252 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~ 252 (632)
.+.|+.|++++|++++ +|++|+|+++|+.+++. + ++++.++. +++ .......++..|++++.++.+ ++.
T Consensus 61 ~~lr~aia~~~~~~~~--~I~it~Ga~~al~~~~~-l--~~~~viv~---~P~--y~~~~~~~~~~G~~i~~v~~~-~~~ 129 (349)
T PRK07908 61 RRARAAVAARHGRTPD--EVLLLAGAAEGFALLAR-L--RPRRAAVV---HPS--FTEPEAALRAAGIPVHRVVLD-PPF 129 (349)
T ss_pred HHHHHHHHHHhCcChh--hEEECCCHHHHHHHHHh-c--CCCeEEEe---CCC--ChHHHHHHHHcCCEEEeeccC-ccc
Confidence 4799999999999876 79999999999999998 4 56544443 343 222345667899999999987 335
Q ss_pred ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecccc--CCCCCCCCCCCCCC-Cc-
Q 006746 253 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACAL--GPKDMDSFGLSLVR-PD- 327 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~--~g~~m~~ldls~~~-~D- 327 (632)
.++.+++ .+ +++++++++.+|+||..+|.+ |.++|+. +.++++|.++. .+.. ...+.... .+
T Consensus 130 ~~d~~~l----~~------~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~--~~~l~~~~~~~~ 196 (349)
T PRK07908 130 RLDPAAV----PD------DADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGE--PESLAGDDLPGV 196 (349)
T ss_pred CcChhHh----cc------CCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCC--ccccccccCCCE
Confidence 6777644 22 247999999999999999999 9999975 77888899763 2221 22221111 23
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCc
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 407 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~ 407 (632)
+++.|++|.+|.+...+|+++++++.++.+.+... .|.. ++.
T Consensus 197 i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~------------~~~~----------------------~~~---- 238 (349)
T PRK07908 197 LVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRA------------HWPV----------------------GTL---- 238 (349)
T ss_pred EEEeecccccCCccceeeeeecCHHHHHHHHhcCC------------CCCc----------------------cHH----
Confidence 55569999998422235999988777665543210 0100 000
Q ss_pred cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCC
Q 006746 408 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP 487 (632)
Q Consensus 408 ~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~ 487 (632)
....+.++- ...+.++ ++.+.++.+...+++.+.|.++
T Consensus 239 ------------~~~a~~~~~----------------------~~~~~~~-----~~~~~~~~~~~r~~l~~~L~~~--- 276 (349)
T PRK07908 239 ------------QLEAIAACC----------------------APRAVAE-----AAADAARLAADRAEMVAGLRAV--- 276 (349)
T ss_pred ------------HHHHHHHHh----------------------cccchHH-----HHHHHHHHHHHHHHHHHHHHhC---
Confidence 000000000 0011122 3556778888888899998876
Q ss_pred CCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccc
Q 006746 488 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA 567 (632)
Q Consensus 488 ~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 567 (632)
| ++++.|. .+..+.+.+.+ ...+.+++.++||.++.|..+.
T Consensus 277 ---~---~~~~~p~----~g~~~~~~~~~-------~~~~~~~l~~~gI~v~~g~~f~---------------------- 317 (349)
T PRK07908 277 ---G---ARVVDPA----AAPFVLVRVPD-------AELLRKRLRERGIAVRRGDTFP---------------------- 317 (349)
T ss_pred ---C---cEeccCC----CceEEEEECCc-------HHHHHHHHHhCCEEEEECCCCC----------------------
Confidence 3 5566553 36666666543 3577778888999998763221
Q ss_pred cccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 568 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.+.||+|++ +.+|+++|+++|++++.+
T Consensus 318 ------------~~~~~~vRis~~---~~~~~~~l~~al~~~~~~ 347 (349)
T PRK07908 318 ------------GLDPDYLRLAVR---PRAEVPVLVQALAEILKA 347 (349)
T ss_pred ------------CCCCCeEEEEeC---CCccHHHHHHHHHHHHhc
Confidence 112469999984 899999999999998765
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-16 Score=168.65 Aligned_cols=167 Identities=14% Similarity=0.200 Sum_probs=124.4
Q ss_pred HHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ | ++++ .|++|+|+|+|+.+++.++ .++|++|++. ..|.+ . ...++..|++++.++
T Consensus 74 ~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~-~----~~~~~~~g~~~~~v~ 145 (391)
T PRK08361 74 ELREAIAEYYKKFYGVDVDVD--NVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVC-Y----VEDAKIAEAKPIRIP 145 (391)
T ss_pred HHHHHHHHHHHHHhCCCCCcc--cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcc-c----HHHHHHcCCEEEEEe
Confidence 5677777765 4 5554 7999999999999999998 7899997754 35543 2 234566899999999
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
++.. +..++++++++.++++ ++++++++.+|+||..+| ++ |+++|+++++++++|.+..- +....
T Consensus 146 ~~~~~~~~~d~~~l~~~i~~~------~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~ 219 (391)
T PRK08361 146 LREENEFQPDPDELLELITKR------TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHY 219 (391)
T ss_pred cCCccCCCCCHHHHHHhcccc------cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCC
Confidence 8733 3468999999988764 488999999999999999 66 78889999999999986421 11101
Q ss_pred C-CCCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 318 S-FGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 318 ~-ldls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
+ +.+ ....++++.|+.|.||. .| +|++++.++.++.+
T Consensus 220 ~~~~~-~~~~~i~~~s~SK~~~~--~GlRiG~~~~~~~~~~~~ 259 (391)
T PRK08361 220 PMIKY-APDNTILANSFSKTFAM--TGWRLGFVIAPEQVIKDM 259 (391)
T ss_pred CHhhc-CCCCEEEEecCchhcCC--cHhhhhhhccCHHHHHHH
Confidence 1 111 12457999999999994 48 89999877665433
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-17 Score=169.16 Aligned_cols=169 Identities=12% Similarity=0.051 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
...++++++++++++|++. .+++|+|+|+|+..++.++ .++||+|++. ..|.+ .... .+..|+++++++.
T Consensus 58 ~g~i~~~~~~~A~~~ga~~---~~~~~~Gst~a~~~~l~al-~~~gd~Vlv~~~~h~s-~~~~----~~~~g~~~~~v~~ 128 (294)
T cd00615 58 TGPIKEAQELAARAFGAKH---TFFLVNGTSSSNKAVILAV-CGPGDKILIDRNCHKS-VING----LVLSGAVPVYLKP 128 (294)
T ss_pred ChHHHHHHHHHHHHhCCCC---EEEEcCcHHHHHHHHHHHc-CCCCCEEEEeCCchHH-HHHH----HHHCCCEEEEecC
Confidence 4678899999999999852 5666999999999999998 7899998765 46665 2333 3457999999977
Q ss_pred cCCc-----cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC---CCCC
Q 006746 248 SWPR-----LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK---DMDS 318 (632)
Q Consensus 248 ~~~~-----~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~---~m~~ 318 (632)
++.. +.++++++++++.++ ++++++++++. |.+|..+|++ |+++||++|++++||+++.+.. ...+
T Consensus 129 ~~~~~~~~~~~i~~~~l~~~l~~~----~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~ 203 (294)
T cd00615 129 ERNPYYGIAGGIPPETFKKALIEH----PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILP 203 (294)
T ss_pred ccCcccCcCCCCCHHHHHHHHHhC----CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccC
Confidence 5332 368999999999753 24688888875 7899999999 9999999999999999986521 1124
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
.+...+++|+++.|+||+++. |++.|+|+++++
T Consensus 204 ~~~~~~~~div~~S~hK~l~g-~~~~~~l~~~~~ 236 (294)
T cd00615 204 SSAAMAGADIVVQSTHKTLPA-LTQGSMIHVKGD 236 (294)
T ss_pred cchhhcCCcEEEEchhcccch-HhHHHHHHhCCC
Confidence 445567899999999997765 778888888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-15 Score=166.10 Aligned_cols=161 Identities=11% Similarity=0.163 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
......+++|+++.|+. ..++++|+++|+.+++.++ +++||+|++. ..|++ ....+...+++.|++++.++.+
T Consensus 63 p~~~~le~~lA~l~g~~----~al~~~SG~~Ai~~al~al-l~pGd~VIv~~~~y~~-t~~~~~~~~~~~G~~v~~vd~~ 136 (427)
T PRK05994 63 PTNAVLEERVAALEGGT----AALAVASGHAAQFLVFHTL-LQPGDEFIAARKLYGG-SINQFGHAFKSFGWQVRWADAD 136 (427)
T ss_pred ccHHHHHHHHHHHhCCC----cEEEEcCHHHHHHHHHHHH-hCCCCEEEEecCcchh-HHHHHHHHHHhcCcEEEEECCC
Confidence 34567889999999985 2677899999999999998 8899997754 56665 3333445567889999988652
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
+.++++++|+++ ++++.+.+.+|++|...|++ |+++|+++|+++++|.+++.|....++ .+++|
T Consensus 137 ------d~~~l~~ai~~~------tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl---~~gaD 201 (427)
T PRK05994 137 ------DPASFERAITPR------TKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPI---EHGAD 201 (427)
T ss_pred ------CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCcc---ccCCc
Confidence 678899888764 48999999999999999999 999999999999999999887633344 46999
Q ss_pred EEEEccccccCCCCCc-eEEEEEeCC
Q 006746 328 FLICSFYQIFGENPSG-FGCLFVKKS 352 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G-~G~L~Vr~~ 352 (632)
+++.|+||++|. +.| +|.+++...
T Consensus 202 ivv~S~tK~lgg-~~~~~gG~v~~~~ 226 (427)
T PRK05994 202 IVVHSLTKFLGG-HGNSMGGIIVDGG 226 (427)
T ss_pred EEEEcCccccCC-CCCcEEEEEEeCC
Confidence 999999998884 433 788888543
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=166.25 Aligned_cols=212 Identities=15% Similarity=0.188 Sum_probs=153.9
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
.+.+|+++.|.+++|+.+++++..++.. |+ |+.... ..+..+..++.+++.+++++|+.
T Consensus 85 tg~v~~tNlg~s~l~~~v~eav~~~~~~--------~~------------~le~~l-~~g~~g~r~~~~e~~lA~l~Gae 143 (464)
T PRK04311 85 TGVVLHTNLGRALLSEAAIEAVTEAARG--------YS------------NLEYDL-ATGKRGSRDRALAALLCALTGAE 143 (464)
T ss_pred CccEEeccCCCCCCCHHHHHHHHHHHhc--------cc------------ccccch-hhcccchHHHHHHHHHHHHhCCC
Confidence 4678999999999999999998765421 11 111000 01123466789999999999985
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccc--hhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYES--EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s--~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
..++++|++.|+.+++.++ .+|++|+++. ++.. .+.. +.+..++.|+++++++.+ ...++++++++|
T Consensus 144 ----~a~vv~sgtaAl~l~l~~l--~~GdeVIvs~~e~~~~ggs~~-i~~~~~~~G~~l~~v~~~---~~t~~~dle~aI 213 (464)
T PRK04311 144 ----DALVVNNNAAAVLLALNAL--AAGKEVIVSRGELVEIGGAFR-IPDVMRQAGARLVEVGTT---NRTHLRDYEQAI 213 (464)
T ss_pred ----eEEEECCHHHHHHHHHHHh--CCCCEEEEcchhhhhcCcchh-hHHHHHHCCcEEEEECCC---CCCCHHHHHHhc
Confidence 3567788889999998775 7899977654 4441 1222 234457789999988753 235789999999
Q ss_pred HhcCcCCCceeEEEEeccCCC--Cc--cccchH-HHHHHhhCCcEEEEeccccC---------CCCCCC--CCCCCCCCc
Q 006746 264 VSKGKKKKQRGLFVFPLHSRM--TG--ARYPYL-WMRIAQENDWHILIDACALG---------PKDMDS--FGLSLVRPD 327 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~--TG--~~~pl~-i~~~a~~~g~~vlvDaaq~~---------g~~m~~--ldls~~~~D 327 (632)
+++| +++.+.|.+|+ +| ...|++ |+++||++|+++++|+++.. +. .+ .+.-++++|
T Consensus 214 ~~~T------klV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~--~p~~~~~l~~GaD 285 (464)
T PRK04311 214 NENT------ALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPD--EPTVQELLAAGVD 285 (464)
T ss_pred CccC------eEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCC--CCchhhHHhcCCc
Confidence 8754 89999999997 45 568999 99999999999999985311 11 12 112237899
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
++++|+||++|. | ..|+++.+++.++.++.
T Consensus 286 iv~fSg~K~LgG-p-~~G~i~g~~~li~~l~~ 315 (464)
T PRK04311 286 LVTFSGDKLLGG-P-QAGIIVGKKELIARLKK 315 (464)
T ss_pred EEEecCcccccC-C-ceEEEEEcHHHHHHHhh
Confidence 999999998874 6 68999999988876653
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-16 Score=166.87 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=124.1
Q ss_pred HHHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|++++ +++++ .|++|+|+++|+.+++.++ .++|++|++. ..|.. ....++..|++++.+
T Consensus 71 ~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~y~~-----~~~~~~~~g~~~~~~ 142 (393)
T PRK05764 71 PELREAIAAKLKRDNGLDYDPS--QVIVTTGAKQALYNAFMAL-LDPGDEVIIPAPYWVS-----YPEMVKLAGGVPVFV 142 (393)
T ss_pred HHHHHHHHHHHHHHhCCCCCHH--HEEEeCCcHHHHHHHHHHh-cCCCCEEEecCCCCcc-----hHHHHHHcCCEEEEE
Confidence 46777777776 34544 7999999999999999998 7889997654 34442 234457789999999
Q ss_pred eccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CC--
Q 006746 246 EFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PK-- 314 (632)
Q Consensus 246 ~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~-- 314 (632)
+.++. ...+++++++++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.+... +.
T Consensus 143 ~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~ 216 (393)
T PRK05764 143 PTGEENGFKLTVEQLEAAITPK------TKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEF 216 (393)
T ss_pred ecCcccCCcCCHHHHHHhhCcc------ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCc
Confidence 98632 3467899999988653 488999999999999987 55 78889999999999986432 11
Q ss_pred -CCCCCCCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 315 -DMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 315 -~m~~ldls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
.+..+.....+.++++.|+-|.+|. .| +|+++.+++.++.+
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~SK~~~~--~G~RiG~i~~~~~~~~~~ 260 (393)
T PRK05764 217 TSIASLSPELRDRTITVNGFSKAYAM--TGWRLGYAAGPKELIKAM 260 (393)
T ss_pred ccHHHcCCCCcCCEEEEecCcccccC--ccceeEEEecCHHHHHHH
Confidence 0112222334568999999999994 47 68888766655443
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=169.29 Aligned_cols=154 Identities=10% Similarity=0.087 Sum_probs=121.1
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+......+++.++++++++|++ ..+.++|+++|+.+++.++ +++||+|++. ..|.+ ....+...+++.|+++
T Consensus 58 y~r~~~p~~~~le~~lA~l~g~~----~~i~~ssG~~Ai~~~l~al-l~~GD~Vi~~~~~y~~-~~~~~~~~~~~~Gi~v 131 (398)
T PRK08249 58 YSRNTNPTVQAFEEKVRILEGAE----AATAFSTGMAAISNTLYTF-LKPGDRVVSIKDTYGG-TNKIFTEFLPRMGVDV 131 (398)
T ss_pred ccCCCChHHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCchHH-HHHHHHHHHhhCCeEE
Confidence 55555667789999999999985 2455567789999998887 7899997754 45654 3333345567789998
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
..++. .++++++++|+++ +++|.+...+|+||...|++ |+++||++|+.+++|.++..+....++
T Consensus 132 ~~vd~------~d~e~l~~~i~~~------tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-- 197 (398)
T PRK08249 132 TLCET------GDHEQIEAEIAKG------CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL-- 197 (398)
T ss_pred EEcCC------CCHHHHHHhcCCC------CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch--
Confidence 77653 4788999988764 48999999999999999999 999999999999999998876521233
Q ss_pred CCCCCcEEEEccccccC
Q 006746 322 SLVRPDFLICSFYQIFG 338 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G 338 (632)
.+++|+++.|++|++|
T Consensus 198 -~~~~Divv~S~sK~l~ 213 (398)
T PRK08249 198 -ALGADLVIHSATKFLS 213 (398)
T ss_pred -hhCCCEEeccCceecC
Confidence 3588999999999888
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=168.23 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
....++.+++++++.|.+ .+++|+|+++|+.+++.++ +++||+|++.. .|.+ ....+..++...|+++..++.
T Consensus 50 ~p~~~~le~~lA~l~g~~----~v~~~~gg~~Ai~~~l~al-l~~GD~Vl~~~p~y~~-~~~~~~~~~~~~~~~v~~~d~ 123 (382)
T TIGR02080 50 NPTRDLLQQALAELEGGA----GAVVTNTGMSAIHLVTTAL-LGPDDLLVAPHDCYGG-TYRLLNALAKKGCFRVLFVDQ 123 (382)
T ss_pred CchHHHHHHHHHHHhCCC----cEEEEcCHHHHHHHHHHHH-cCCCCEEEEcCCCcHH-HHHHHHHHHhhcCeEEEEECC
Confidence 344568899999999952 5899999999999999999 89999987654 5543 333334445566778776642
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
.+.++++++++++ ++++.++..+|+||...|++ |+++|+++|+++++|.++..|....++. .++
T Consensus 124 ------~d~~~l~~ai~~~------tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~---~ga 188 (382)
T TIGR02080 124 ------GDEQALRAALAQK------PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLA---LGA 188 (382)
T ss_pred ------CCHHHHHHhcCcC------ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchh---hCC
Confidence 3678899888764 48999999999999999999 9999999999999999987764212332 478
Q ss_pred cEEEEccccccCCCCCc--eEEEEEeC
Q 006746 327 DFLICSFYQIFGENPSG--FGCLFVKK 351 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G--~G~L~Vr~ 351 (632)
|+++.|++|+++. +.| .|++.+++
T Consensus 189 Divv~S~sK~l~G-~~~~~~G~i~~~~ 214 (382)
T TIGR02080 189 DLVLHSCTKYLNG-HSDVIAGAVIAKD 214 (382)
T ss_pred CEEEeecceeccC-CCCceeEEEEeCC
Confidence 9999999997763 556 56655544
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=171.47 Aligned_cols=163 Identities=11% Similarity=0.056 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
.++.++++++++|++ ..++++|++.|+.++..++ .++||+|++.. .|.. ....+...+++.|+++..++.
T Consensus 63 ~~~Le~~lA~l~G~~----~al~~~sG~~Ai~~~l~al-~~~Gd~Vv~~~~~y~~-~~~~~~~~~~~~gi~~~~~~~--- 133 (386)
T PRK06767 63 VKLFEERMAVLEGGE----EALAFGSGMAAISATLIGF-LKAGDHIICSNGLYGC-TYGFLEVLEEKFMITHSFCDM--- 133 (386)
T ss_pred hHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCcHHH-HHHHHHHHHhhcCeEEEEeCC---
Confidence 468899999999974 2456677788999999888 78999987654 4443 344444556677888776644
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL 329 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~ 329 (632)
.++++++++++++ ++|+.+...+|+||...|++ |.++|+++|+.+++|.++..|.. ..++ ..++|++
T Consensus 134 ---~d~~~l~~~i~~~------tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~--~~pl-~~g~Div 201 (386)
T PRK06767 134 ---ETEADIENKIRPN------TKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYL--QRPL-ELGCDAV 201 (386)
T ss_pred ---CCHHHHHHhhCcC------ceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccccc--CCch-hcCCcEE
Confidence 3678898888764 48999999999999999999 99999999999999999876642 2223 3588999
Q ss_pred EEccccccCCCCCc--eEEEEEeCCCccc
Q 006746 330 ICSFYQIFGENPSG--FGCLFVKKSTVPI 356 (632)
Q Consensus 330 ~~S~hK~~G~~P~G--~G~L~Vr~~~~~~ 356 (632)
+.|++|++|. +.+ .|+++.+++.+..
T Consensus 202 ~~S~sK~l~g-~g~~~gG~v~~~~~~i~~ 229 (386)
T PRK06767 202 VHSATKYIGG-HGDVVAGVTICKTRALAE 229 (386)
T ss_pred EecCcceecC-CCCceeEEEEeChHHHHH
Confidence 9999998874 433 5888877766543
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-15 Score=162.23 Aligned_cols=324 Identities=13% Similarity=0.098 Sum_probs=213.0
Q ss_pred CCceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
.+.++||.+... ..|..+++++...+..... ..|+. . . ..+.|+.|++++|.
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~Y~~-~-~-~~~lr~~ia~~~~~ 78 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEVAL------------------------NRYPD-P-R-AAALKAALRAAMGV 78 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhcccc------------------------ccCCC-C-C-HHHHHHHHHHHhCc
Confidence 357889877766 4677888887654321000 00111 0 1 25789999999998
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
+++ ..|++|+|+++++.+++..+ ..+||+|++.. .|. .....++..|++++.++.+ +++.+++++|++.+.
T Consensus 79 ~~~-~~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~-----~~~~~~~~~g~~~~~i~~~-~~~~~d~~~l~~~~~ 150 (356)
T PRK04870 79 PAG-ADVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFV-----MYRMSAKLAGLEFVGVPLT-ADFTLDLPAMLAAIA 150 (356)
T ss_pred CCC-CcEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHH-----HHHHHHHHcCCEEEEecCC-CCCCCCHHHHHHHhh
Confidence 753 37999999999999999988 58899977543 332 2345678899999999987 566799999999886
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecccc-CCC-CCCCCCCCCCCCcEEEEccccccCCCC
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACAL-GPK-DMDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~-~g~-~m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
+. +++++.+++.+|+||..+|.+ +.++++..+.++++|.+.. ... ...+ .+....--+++.|+.| +|.
T Consensus 151 ~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~vi~~~S~SK-~~~-- 221 (356)
T PRK04870 151 EH-----RPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLP-RLARFPNLLVMRTVSK-LGL-- 221 (356)
T ss_pred cC-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHH-HHhhCCCEEEEecchh-hhh--
Confidence 42 258999999999999999999 8887776688899998742 221 1001 1222333588999999 884
Q ss_pred Cc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCc
Q 006746 342 SG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL 419 (632)
Q Consensus 342 ~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~ 419 (632)
+| +|+++..++.++.+..... .|... .+
T Consensus 222 ~GlRiG~~i~~~~~i~~~~~~~~------------~~~~~--------------~~------------------------ 251 (356)
T PRK04870 222 AGLRLGYLAGHPAWIAELDKVRP------------PYNVN--------------VL------------------------ 251 (356)
T ss_pred HHHhhhhhhCCHHHHHHHHHccC------------CCcCC--------------HH------------------------
Confidence 36 8998887766554432110 01000 00
Q ss_pred ccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEEC
Q 006746 420 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYG 499 (632)
Q Consensus 420 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iyg 499 (632)
..... ..+++... -++...++.+...+++.+.|.++ +.+.++
T Consensus 252 ---~q~~a------------------------~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~- 293 (356)
T PRK04870 252 ---TQATA------------------------LFALEHVD--VLDAQAAQLRAERTRLAAALAAL--------PGVTVF- 293 (356)
T ss_pred ---HHHHH------------------------HHHHhCHH--HHHHHHHHHHHHHHHHHHHHHhC--------CCcEEC-
Confidence 00000 02333221 14566677778888888888776 445543
Q ss_pred CCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccC
Q 006746 500 PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKA 579 (632)
Q Consensus 500 p~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 579 (632)
| ..++.+.+.+. +...+.+++.++||.++.|....
T Consensus 294 ~----~~~~~~~~~~~-------~~~~~~~~l~~~gI~v~~~~~f~---------------------------------- 328 (356)
T PRK04870 294 P----SAANFILVRVP-------DAAAVFDGLKTRGVLVKNLSGMH---------------------------------- 328 (356)
T ss_pred C----CCCeEEEEECC-------CHHHHHHHHHHCCEEEEECCCCC----------------------------------
Confidence 2 23555666543 23556677788999998652110
Q ss_pred CCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 580 NLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 580 ~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
....+.||+|++ +.+|+++|+++|+++|
T Consensus 329 ~~~~~~iRis~~---~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 329 PLLANCLRVTVG---TPEENAQFLAALKAAL 356 (356)
T ss_pred CCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence 112469999988 7999999999998764
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=165.80 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+++.++++++++|++. .++++|+++|+.+++.++ +++||+|++.. .|.. ....+...+...|++++.++.+
T Consensus 59 p~~~~le~~lA~l~g~~~----av~~~sG~~Ai~~~l~al-~~~Gd~Vi~~~~~y~~-t~~~~~~~~~~~G~~~~~vd~~ 132 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEA----AVATSSGMGAIAATLLTI-LKAGDHLISDECLYGC-TFALLEHALTKFGIQVDFINMA 132 (391)
T ss_pred chHHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHH-hCCCCEEEEecCcchH-HHHHHHHHHhcCCeEEEEECCC
Confidence 445688999999999852 567888899999999888 78999987654 4443 3333455567789999888763
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
++++++++++++ ++++.+...+|++|...|++ |+++|+++|+++++|.++..|..-.++ ..++|
T Consensus 133 ------d~e~l~~~i~~~------tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~---~~g~D 197 (391)
T TIGR01328 133 ------IPEEVKAHIKDN------TKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPV---ALGVD 197 (391)
T ss_pred ------CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCch---hcCCC
Confidence 678898888764 48999999999999999999 999999999999999998776421233 35889
Q ss_pred EEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 328 FLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
+++.|+.|++|. |.+ .|+++.+++.++.+
T Consensus 198 ivv~S~sK~lgg-~g~~~gG~v~~~~~li~~l 228 (391)
T TIGR01328 198 VVVHSATKYIGG-HGDVVAGLICGKAELLQQI 228 (391)
T ss_pred EEEccccccccC-CCCceEEEEEcCHHHHHHH
Confidence 999999999884 433 46666666554433
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-15 Score=160.27 Aligned_cols=167 Identities=11% Similarity=0.179 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.++++++++++ .|++|+|+++++.+++.++ +++||+|++. ..|+. ....++..|+++..++.+ +
T Consensus 67 ~~lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~v~~~~p~y~~-----~~~~~~~~g~~~~~~~~~--~ 136 (359)
T PRK03158 67 PELRTKVAKHLGVDEE--QLLFGAGLDEVIQMISRAL-LNPGTNTVMAEPTFSQ-----YRHNAIIEGAEVREVPLK--D 136 (359)
T ss_pred HHHHHHHHHHhCCCHH--HEEECCCHHHHHHHHHHHH-hCCCCEEEEcCCCHHH-----HHHHHHHcCCeEEEEecC--C
Confidence 5789999999999875 7999999999999999998 6889997754 34442 234466789999999986 4
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEeccccC----CCCCCCCC-CCC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACALG----PKDMDSFG-LSL 323 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~----g~~m~~ld-ls~ 323 (632)
+.++++++++.++++ ++++.++..+|+||..+|.+ |.++++. +|+++++|.+... +.....+. +..
T Consensus 137 ~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 210 (359)
T PRK03158 137 GGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEK 210 (359)
T ss_pred CCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHh
Confidence 568999998877653 48899999999999999999 8888876 5899999997532 11000111 112
Q ss_pred CCCcEEEEccccccCCCCCce--EEEEEeCCCcccc
Q 006746 324 VRPDFLICSFYQIFGENPSGF--GCLFVKKSTVPIL 357 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~--G~L~Vr~~~~~~L 357 (632)
.+..+++.|+-|.|| ..|+ |+++..++.++.+
T Consensus 211 ~~~vi~~~S~SK~~g--~~GlRiG~~v~~~~~~~~~ 244 (359)
T PRK03158 211 YENLIVLRTFSKAYG--LAALRVGYGIASEELIEKL 244 (359)
T ss_pred cCCEEEEEechHhhc--CcchhhehhcCCHHHHHHH
Confidence 345688899999999 4476 9988877665544
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=168.39 Aligned_cols=173 Identities=11% Similarity=0.099 Sum_probs=127.2
Q ss_pred cccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCC
Q 006746 162 LLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 162 ~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~ 240 (632)
+.|+.......++.|+++++++|+.+ .++|+ ++++|+..++.++ +++||+|++.. .+.. ....+...++..|+
T Consensus 37 ~~y~r~~~p~~~~L~~~lA~l~g~~~---~v~~~-sG~~ai~~~l~al-~~~Gd~Vl~~~~~~~~-ty~~~~~~~~~~G~ 110 (376)
T PRK06460 37 YRYSREANPTVLELTKKIVELENAEM---GVAFS-SGMGAISTTALAL-LKPGNSVLVHRDMFGR-SYRFFTDYLKNWGV 110 (376)
T ss_pred cceeCCCCccHHHHHHHHHHHhCCCc---EEEeC-CHHHHHHHHHHHH-hCCCCEEEEecCCcCc-HHHHHHHHHHhhCc
Confidence 44676667778899999999999953 57775 5578999999988 78999987653 2332 23334556788899
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCC
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSF 319 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~l 319 (632)
++..++.+ +.+.+++.+.+ +++++.+++.+|+||...|++ |+++|+++|+++++|.++..+....++
T Consensus 111 ~v~~~~~~------~~~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l 178 (376)
T PRK06460 111 NVDASNPG------SDNIIEKAKSK------RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPL 178 (376)
T ss_pred EEEEECCC------CHHHHHHhcCC------CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChh
Confidence 99887653 12333333333 358999999999999999999 999999999999999998776432233
Q ss_pred CCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccc
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPI 356 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~ 356 (632)
.++.|+++.|++|++|. +.| .|+++.+++.++.
T Consensus 179 ---~~~~divv~S~sK~l~G-~~~~~~G~~~~~~~l~~~ 213 (376)
T PRK06460 179 ---ELGADIVVHSASKFLAG-HNDVIAGLAAGYGKLLNV 213 (376)
T ss_pred ---hcCCCEEEeecceeccC-CCCceEEEEecCHHHHHH
Confidence 24689999999998872 432 6777666554433
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-16 Score=167.74 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=124.5
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+......+++.++++++++|++ .++.++++++|+.+++.++ +++||+|++. ..|.+ ...++.. .+..|+++
T Consensus 47 y~r~~np~~~~lE~~lA~l~g~~----~~l~~~sG~~Ai~~~l~~l-l~~GD~Vlv~~~~y~~-~~~~~~~-~~~~g~~v 119 (385)
T PRK08574 47 YSREENPTLRPLEEALAKLEGGV----DALAFNSGMAAISTLFFSL-LKAGDRVVLPMEAYGT-TLRLLKS-LEKFGVKV 119 (385)
T ss_pred EECCCCccHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHH-hCCCCEEEEcCCCchh-HHHHHHH-hhccCcEE
Confidence 44444456678999999999974 3556688999999999888 7899997755 45554 4444443 36789888
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
..+.. +.++++++|++. +++++.+...+|+||..+|++ |+++||++|+++++|.+++.|....++
T Consensus 120 ~~~~~-------d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-- 185 (385)
T PRK08574 120 VLAYP-------STEDIIEAIKEG-----RTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-- 185 (385)
T ss_pred EEECC-------CHHHHHHhcCcc-----CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh--
Confidence 77632 467888888651 248999999999999999999 999999999999999999877532343
Q ss_pred CCCCCcEEEEccccccCCCCCc-e-EEEEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG-F-GCLFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G-~-G~L~Vr~ 351 (632)
.+++|++++|++|++|. |.+ + |++++++
T Consensus 186 -~~GaDivv~S~sK~l~g-~~d~~gG~vi~~~ 215 (385)
T PRK08574 186 -RHGADFVVHSLTKYIAG-HNDVVGGVAVAWS 215 (385)
T ss_pred -hhCCcEEEeeCceeecC-CCCceeEEEEECc
Confidence 35889999999997764 543 3 4355543
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-15 Score=166.97 Aligned_cols=167 Identities=11% Similarity=0.095 Sum_probs=125.1
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+.......+...+.++++.+.. .+++++++++|+.++.. + +++||+|++. ..|.+ ....+....++.|+++
T Consensus 127 Y~r~gnpt~~aLE~~lA~leg~e----~ai~~~SG~aAi~~il~-l-l~~GD~VI~~~~~y~~-t~~ll~~~l~~~G~~v 199 (464)
T PLN02509 127 YTRSGNPTRDALESLLAKLDKAD----RAFCFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGG-SDRLLSQVVPRSGVVV 199 (464)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCC----EEEEeCcHHHHHHHHHH-H-hCCCCEEEEcCCchhh-HHHHHHHHHHHCCeEE
Confidence 44333345678889999999864 24455677888877664 4 6899998764 45543 3334445567889999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++. .+.++++++|.++ ++++.+.+.+|++|...|++ |+++|+++|++++||.++..|....++
T Consensus 200 ~~vd~------~d~e~l~~ai~~~------TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl-- 265 (464)
T PLN02509 200 KRVNT------TNLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPL-- 265 (464)
T ss_pred EEeCC------CCHHHHHHhCCcC------CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChh--
Confidence 88753 3678898888654 48999999999999999999 999999999999999998887532233
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEeCCC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVKKST 353 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~ 353 (632)
.+++|++++|++|+++. |.+ .|+++++++.
T Consensus 266 -~~gaDivv~S~tK~l~G-~gdv~gG~v~~~~~~ 297 (464)
T PLN02509 266 -ELGADIVMHSATKFIAG-HSDVMAGVLAVKGEK 297 (464)
T ss_pred -hcCCcEEEecCcccccC-CCccceeEEEeccHH
Confidence 35889999999997764 655 6777776653
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-15 Score=161.16 Aligned_cols=162 Identities=7% Similarity=0.086 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
..+.|+.|+++++++++ +|++|+|+++++.+++..+ .+|+.++....+. .....++..|++++.++.+..+
T Consensus 57 ~~~lr~~ia~~~~~~~~--~i~it~Ga~~~l~~~~~~l--~~g~viv~~P~y~-----~~~~~~~~~g~~~~~v~~~~~~ 127 (356)
T PRK08056 57 YRHLHQALARHHQVPAS--WILAGNGETESIFAVVSGL--KPRRAMIVTPGFA-----EYRRALQQVGCEIRRYSLREAD 127 (356)
T ss_pred HHHHHHHHHHHhCcChh--hEEECCCHHHHHHHHHHHh--CCCCEEEeCCCcH-----HHHHHHHHcCCeEEEEeccccc
Confidence 46899999999999876 7999999999999999986 5676555433332 2345667889999999986333
Q ss_pred c-ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccc--cCCCC--CCCCCCC
Q 006746 252 L-RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACA--LGPKD--MDSFGLS 322 (632)
Q Consensus 252 ~-~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq--~~g~~--m~~ldls 322 (632)
+ .++ +++.+.+.+ +++++.+++.+|+||..+| ++ |+++|+++|+++++|.+- +.... ..++ +.
T Consensus 128 ~~~~~-~~~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~ 199 (356)
T PRK08056 128 GWQLT-DAILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ-LA 199 (356)
T ss_pred CCCcc-HHHHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH-hc
Confidence 2 333 455555543 3589999999999999999 67 889999999999999972 22110 0111 23
Q ss_pred CCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 323 LVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
..+.++++.|++|+||.+-..+|+++..
T Consensus 200 ~~~~~i~~~S~SK~~~~~G~RiG~~v~~ 227 (356)
T PRK08056 200 DNPHLWVLRSLTKFYAIPGLRLGYLVNS 227 (356)
T ss_pred cCCCEEEEEechhhccCcchhheeeecC
Confidence 3456899999999999533445777664
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-16 Score=147.29 Aligned_cols=164 Identities=18% Similarity=0.142 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
++++++.++++|++++ +.++|++|+|+|+.+++.++. .++++|+ ....|++ ..| ..++..|++++.++.+.
T Consensus 2 ~~~~~~~l~~~~~~~~--~~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~--~~~--~~~~~~g~~~~~v~~~~- 73 (170)
T cd01494 2 LEELEEKLARLLQPGN--DKAVFVPSGTGANEAALLALL-GPGDEVIVDANGHGS--RYW--VAAELAGAKPVPVPVDD- 73 (170)
T ss_pred HHHHHHHHHHHcCCCC--CcEEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccce--ehh--hHHHhcCCEEEEeccCC-
Confidence 4689999999998543 378999999999999999984 5688865 4557775 232 34577899999998863
Q ss_pred ccccCH--HHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC-CCCCCCCCCC
Q 006746 251 RLRINS--EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM-DSFGLSLVRP 326 (632)
Q Consensus 251 ~~~i~~--~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m-~~ldls~~~~ 326 (632)
....+. +++++... ..+++++.+++.++.+|...|++ +.++|+++|+++++|+++..+... ..++....++
T Consensus 74 ~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~ 148 (170)
T cd01494 74 AGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGA 148 (170)
T ss_pred CCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccC
Confidence 322222 23333221 24679999999999999999999 999999999999999999886520 0125667789
Q ss_pred cEEEEccccccCCCCCceEEEEEe
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
|+++.|+||++| +.|.|+|++|
T Consensus 149 d~~~~s~~K~~~--~~~~G~l~~~ 170 (170)
T cd01494 149 DVVTFSLHKNLG--GEGGGVVIVK 170 (170)
T ss_pred CEEEEEcccccC--CCceEEEEeC
Confidence 999999999999 4699999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-15 Score=158.19 Aligned_cols=168 Identities=8% Similarity=0.128 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.|+++++++++ .|++|+|+++++.+++..+ +++||+|++.. .|. .....++..|++++.++.+ ++
T Consensus 62 ~~lr~~ia~~~~~~~~--~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~-----~~~~~~~~~g~~~~~v~~~-~~ 132 (351)
T PRK14807 62 EKLREELARYCSVVPT--NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFA-----MYSVYSKIAGAVEIPVKLK-ED 132 (351)
T ss_pred HHHHHHHHHHhCCCcc--cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChH-----HHHHHHHHcCCeEEEeecC-CC
Confidence 5789999999999876 7999999999999999998 78999977542 332 3345567889999999987 55
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecccc--CCCCCCCCCCCCCCCcE
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACAL--GPKDMDSFGLSLVRPDF 328 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~--~g~~m~~ldls~~~~Df 328 (632)
+.++.+++++++++. +++++.++..+|+||..+|.+ +.+++++.+.++++|.+.. .+....++ +....--+
T Consensus 133 ~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~-~~~~~~vi 206 (351)
T PRK14807 133 YTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDV-INEFENLI 206 (351)
T ss_pred CCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHH-hhhCCCEE
Confidence 678999999988742 358899999999999999999 9999988788899999853 22211111 11223358
Q ss_pred EEEccccccCCCCCceEEEEEeCCCcc
Q 006746 329 LICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
++.|+.|.+|.+-..+|+++..++.++
T Consensus 207 ~~~S~SK~~~~~GlRiG~~v~~~~~~~ 233 (351)
T PRK14807 207 VLRTLSKAFGLAGLRVGYAVANENILK 233 (351)
T ss_pred EEecchHhcccchhceeeeecCHHHHH
Confidence 889999999953233677775555544
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-14 Score=158.67 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
....++.+++|+++.|++ + . ++++|+++|+.+++.++ +++||+|++. ..|.. ....+...+++.|+++..++.
T Consensus 59 ~p~~~~Le~~lA~l~g~~-~--~-v~~~sG~~Ai~~~l~al-l~pGD~Vvv~~p~Y~~-t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 59 NPTRDLLGEALAELEGGA-G--G-VITATGMGAINLVLNAL-LQPGDTLVVPHDAYGG-SWRLFNALAKKGHFALITADL 132 (405)
T ss_pred ChHHHHHHHHHHHHhCCC-c--e-EEEcCHHHHHHHHHHHH-hCCCCEEEEccCCchH-HHHHHHHHHHhcCcEEEEECC
Confidence 345567899999999984 2 4 45667789999999999 8999997764 35543 233344556677888887754
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
.+.++|+++++++ ++++.++..+|+||...|++ |+++|+++|+++++|.++..|....++. +++
T Consensus 133 ------~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~---~ga 197 (405)
T PRK08776 133 ------TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLE---FGA 197 (405)
T ss_pred ------CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCccc---ccC
Confidence 3678898888654 48999999999999999999 9999999999999999987764223443 688
Q ss_pred cEEEEccccccCCCCCc--eEEEEEeC
Q 006746 327 DFLICSFYQIFGENPSG--FGCLFVKK 351 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G--~G~L~Vr~ 351 (632)
|+++.|.+|++|. |.+ .|++++++
T Consensus 198 Divv~S~tK~l~g-~~~~~~G~vv~~~ 223 (405)
T PRK08776 198 DLVLHSTTKYING-HSDVVGGAVVARD 223 (405)
T ss_pred CEEEecCceeecC-CCCceEEEEEeCC
Confidence 9999999997764 555 46655544
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=163.70 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=125.4
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++......+..+++++++.|.. .+++++|+++|+.+++.++ +++||+|++.. .|++ ....+...+++.|+++
T Consensus 46 Y~R~~~pt~~~L~~~lA~l~g~~----~~i~~~sg~~Ai~~~l~~l-~~~GD~Vl~~~~~y~~-~~~~~~~~~~~~gi~v 119 (386)
T PRK08045 46 YSRRGNPTRDVVQRALAELEGGA----GAVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGG-SYRLFDSLAKRGCYRV 119 (386)
T ss_pred eeCCCCccHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCCCcHH-HHHHHHHHHhhCCeEE
Confidence 33333345568999999999963 4889999999999999987 78999987654 5553 3333345555566677
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
..++ ..+.++++++++++ ++++.++..+|+||..+|++ |.++|+++|++++||.++..|....++
T Consensus 120 ~~vd------~~d~e~l~~~l~~~------tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl-- 185 (386)
T PRK08045 120 LFVD------QGDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL-- 185 (386)
T ss_pred EEeC------CCCHHHHHHhcccC------CeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch--
Confidence 7653 14788998888754 48999999999999999999 999999999999999998777532344
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEe
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVK 350 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr 350 (632)
.+++|+++.|++|++|. +.+ .|+++++
T Consensus 186 -~~gaDivv~S~tK~l~G-~~d~~~G~vi~~ 214 (386)
T PRK08045 186 -ALGADLVLHSCTKYLNG-HSDVVAGVVIAK 214 (386)
T ss_pred -hhCCCEEEeecceeccC-CCCceeEEEEeC
Confidence 35889999999997764 555 4555554
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=164.67 Aligned_cols=166 Identities=10% Similarity=0.106 Sum_probs=127.0
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++......+...++++++.|+.. .|+|+ +++.|+..++.++ +++||+|++. ..|++ ....+ ..+++.|+++
T Consensus 41 Y~r~g~p~~~~lE~~la~leg~~~---~v~~s-sG~~Ai~~~l~al-l~~Gd~Vv~~~~~y~~-t~~~~-~~l~~~G~~v 113 (397)
T PRK05939 41 YARQGTPTTAALEAKITKMEGGVG---TVCFA-TGMAAIAAVFLTL-LRAGDHLVSSQFLFGN-TNSLF-GTLRGLGVEV 113 (397)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCe---EEEeC-CHHHHHHHHHHHH-cCCCCEEEECCCcccc-HHHHH-HHHHhcCCEE
Confidence 343334556789999999999852 45555 5689999999888 8999997754 45654 22232 3457789999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++. .+.++|+++++++ ++++.+.+.+|+||...|++ |+++||++|+++++|+++..|. .++.
T Consensus 114 ~~v~~------~d~e~l~~~l~~~------tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~---~~~~ 178 (397)
T PRK05939 114 TMVDA------TDVQNVAAAIRPN------TRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW---LFRP 178 (397)
T ss_pred EEECC------CCHHHHHHhCCCC------CeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc---ccCc
Confidence 98875 2678999988764 48999999999999999999 9999999999999999998775 4455
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
..+++|+++.|++|++|.+-..+|..++.+
T Consensus 179 ~~~gaDivv~S~sK~~~g~g~~igg~v~~~ 208 (397)
T PRK05939 179 KDVGASLVINSLSKYIAGHGNALGGAVTDT 208 (397)
T ss_pred cccCCEEEEecCeecccCCCCeEEEEEecC
Confidence 556899999999998874222346655543
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-15 Score=161.78 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
....|++|+++.++. .+++++|+++|+..++.++ +++||+|++. ..|.+ ...-+....++.|+++..++.+
T Consensus 63 ~~~Le~~iA~le~~~----~~~~~~sG~~Ai~~~l~al-l~~GD~Vvv~~~~Y~~-t~~l~~~~l~~~Gi~v~~v~~~-- 134 (394)
T PRK09028 63 HFAFQAAIVELEGGA----GTALYPSGAAAISNALLSF-LKAGDHLLMVDSCYEP-TRDLCDKILKGFGIETTYYDPM-- 134 (394)
T ss_pred HHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEECCCcHH-HHHHHHHhhhhcceEEEEECCC--
Confidence 347889999998763 5889999999999999998 8999997754 45544 2322334456789998877542
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL 329 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~ 329 (632)
+.++++++++++ ++++.+.+.+|+||.+.|++ |+++||++|++++||.++..|....|+ ++++|++
T Consensus 135 ----~~e~l~~~l~~~------TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl---~~GaDiv 201 (394)
T PRK09028 135 ----IGEGIRELIRPN------TKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPF---EMGVDIS 201 (394)
T ss_pred ----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCcc---ccCceEE
Confidence 346788887654 48999999999999999999 999999999999999999888533455 4699999
Q ss_pred EEccccccCC
Q 006746 330 ICSFYQIFGE 339 (632)
Q Consensus 330 ~~S~hK~~G~ 339 (632)
+.|.||+++.
T Consensus 202 v~S~tK~l~G 211 (394)
T PRK09028 202 IQAATKYIVG 211 (394)
T ss_pred EEeCCeEecC
Confidence 9999997763
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-15 Score=163.18 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
..++.+++++++.|++ ..++++|++.|+..+..++ +++||+|++.. .|.. ....+...+++.|++++.++.
T Consensus 71 ~~~~le~~lA~l~g~~----~al~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~~~~-t~~~~~~~~~~~G~~v~~vd~-- 142 (403)
T PRK07810 71 TVSMFEERLRLIEGAE----ACFATASGMSAVFTALGAL-LGAGDRLVAARSLFGS-CFVVCNEILPRWGVETVFVDG-- 142 (403)
T ss_pred hHHHHHHHHHHHhCCC----cEEEECChHHHHHHHHHHH-hCCCCEEEEccCCcch-HHHHHHHHHHHcCcEEEEECC--
Confidence 3568899999999975 4778889999999988887 78999987655 4433 344445667789999999864
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcE
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDF 328 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df 328 (632)
.++++++++|++++ +++.+...+|++|...|++ |+++||++|++++||.++..|....++ .+++|+
T Consensus 143 ----~d~~~l~~ai~~~t------klV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~---~~gaDi 209 (403)
T PRK07810 143 ----EDLSQWEEALSVPT------QAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGL---PLGADV 209 (403)
T ss_pred ----CCHHHHHHhcCcCc------eEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChh---hcCCcE
Confidence 27789999887654 8999999999999999999 999999999999999998877532243 357899
Q ss_pred EEEccccccCCCCCc---eEEEEEeCCCc
Q 006746 329 LICSFYQIFGENPSG---FGCLFVKKSTV 354 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G---~G~L~Vr~~~~ 354 (632)
++.|++|++| ..| .|+++.+++.+
T Consensus 210 vv~S~tK~l~--g~g~~~gG~v~~~~~~~ 236 (403)
T PRK07810 210 VVYSGTKHID--GQGRVLGGAILGDREYI 236 (403)
T ss_pred EEccCCceec--CCcCceeEEEEeChHHH
Confidence 9999999887 335 46666665543
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-14 Score=158.63 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=144.7
Q ss_pred CCceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcC-
Q 006746 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN- 184 (632)
Q Consensus 107 ~~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~- 184 (632)
.+.++||.+..+ +.|..+++++.+.+... +.. |+.. .-..+.|+.|+++++
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~----~~~---------------------Y~~~--~g~~~lr~~ia~~~~~ 84 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAG----HTR---------------------YTAA--RGLPALREAIAGFYAQ 84 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcC----CCc---------------------cCCC--CCCHHHHHHHHHHHHH
Confidence 567999999988 46888888876644310 000 1100 112468888888873
Q ss_pred -----CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCC-ccccCHH
Q 006746 185 -----ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWP-RLRINSE 257 (632)
Q Consensus 185 -----a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~-~~~i~~~ 257 (632)
++++ +|++|+|+++|+++++..+ +.+||+|++ ..+|+. .. ..++..|++++.++++.. +..++.+
T Consensus 85 ~~g~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~-~~----~~~~~~g~~~~~v~~~~~~~~~~d~~ 156 (387)
T PRK08960 85 RYGVDVDPE--RILVTPGGSGALLLASSLL-VDPGKHWLLADPGYPC-NR----HFLRLVEGAAQLVPVGPDSRYQLTPA 156 (387)
T ss_pred HhCCCCChh--hEEEccCcHHHHHHHHHHh-cCCCCEEEEcCCCCcc-hH----HHHHhcCCeEEEEecCcccCCCCCHH
Confidence 5554 7999999999999999998 789999765 456664 22 234557999999998633 3468899
Q ss_pred HHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc-CCCCCCCCCCCCCCC-cEEEE
Q 006746 258 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL-GPKDMDSFGLSLVRP-DFLIC 331 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~-~g~~m~~ldls~~~~-Df~~~ 331 (632)
++++++++++ +++++++.+|+||..+|.+ |+++|+++|+++++|.+-. .-.+-....+-.... -+++.
T Consensus 157 ~l~~~~~~~~------~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~ 230 (387)
T PRK08960 157 LVERHWNADT------VGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLN 230 (387)
T ss_pred HHHHHhCccc------eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEe
Confidence 9998887643 7888999999999999966 4556899999999998632 110000111111122 37889
Q ss_pred ccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 332 SFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 332 S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
|+.|.||. .| +|+++..++.++.+
T Consensus 231 S~SK~~g~--~GlRiG~~~~~~~~~~~~ 256 (387)
T PRK08960 231 SFSKYFGM--TGWRLGWLVAPPAAVPEL 256 (387)
T ss_pred ecccccCC--cccEEEEEEcCHHHHHHH
Confidence 99999994 47 89999877665444
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-15 Score=162.71 Aligned_cols=162 Identities=11% Similarity=0.159 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.....+.+++|+++.|++. .++| +|+++|+.++..++ +++||+|++. ..|.+ ....+....++.|+++..++.
T Consensus 60 ~p~~~~Le~~lA~~~g~~~---~i~~-~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~-t~~~~~~~~~~~gi~~~~~d~ 133 (388)
T PRK07811 60 NPTRTALEEQLAALEGGAY---GRAF-SSGMAATDCLLRAV-LRPGDHIVIPNDAYGG-TFRLIDKVFTRWGVEYTPVDL 133 (388)
T ss_pred CccHHHHHHHHHHHhCCCc---eEEe-CCHHHHHHHHHHHH-hCCCCEEEEcCCCchH-HHHHHHHhCcCCCeEEEEeCC
Confidence 3456789999999999963 4655 56789999999999 8999997765 45553 233334445567888887754
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
.++++++++++++ ++++.+...+|+||...|++ |+++|+++|+++++|.++..+....+++ +++
T Consensus 134 ------~d~e~l~~~i~~~------tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~---~ga 198 (388)
T PRK07811 134 ------SDLDAVRAAITPR------TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLA---LGA 198 (388)
T ss_pred ------CCHHHHHHhcCcC------CeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCchh---hCC
Confidence 3788999888764 48999999999999999999 9999999999999999987764212443 478
Q ss_pred cEEEEccccccCCCCCc--eEEEEEeCC
Q 006746 327 DFLICSFYQIFGENPSG--FGCLFVKKS 352 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G--~G~L~Vr~~ 352 (632)
|++++|++|++|. |.+ .|+++++++
T Consensus 199 Divv~S~sK~l~g-~~~~~gG~vv~~~~ 225 (388)
T PRK07811 199 DVVVHSTTKYIGG-HSDVVGGALVTNDE 225 (388)
T ss_pred cEEEecCceeecC-CCCcEEEEEEECCH
Confidence 9999999998874 544 477777654
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.7e-15 Score=160.67 Aligned_cols=161 Identities=13% Similarity=0.156 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...++.+++|+++.|+. ..++++|+++|+.+++.++ +++||+|++. ..|+. ....+....+..|+++..++.
T Consensus 58 pt~~~Le~~lA~l~g~~----~~l~~ssG~~Ai~~al~al-~~~Gd~Vl~~~~~Y~~-t~~~~~~~l~~~gi~v~~~d~- 130 (425)
T PRK06084 58 PTNDVLEQRVAALEGGV----GALAVASGMAAITYAIQTI-AEAGDNIVSVAKLYGG-TYNLLAHTLPRIGIETRFAAH- 130 (425)
T ss_pred chHHHHHHHHHHHhCCC----ceeEehhHHHHHHHHHHHH-hCCCCEEEEeCCCcch-HHHHHHHhcccceeEEEEECC-
Confidence 44568899999999964 3567789999999999988 7889997754 45553 233333333446888777653
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
.++++++++|+++ ++++.+...+|+||...|++ |.++|+++|+++++|.++..|....++ .+++|
T Consensus 131 -----~d~e~le~ai~~~------tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~---~~gaD 196 (425)
T PRK06084 131 -----DDIAALEALIDER------TKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPF---EHGAD 196 (425)
T ss_pred -----CCHHHHHHHhccC------CcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChh---hcCCC
Confidence 3788999998764 48999999999999999999 999999999999999999877532233 46899
Q ss_pred EEEEccccccCCCCCceEEEEEeC
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
+++.|++|++|.+-..+|.+++.+
T Consensus 197 ivv~S~tK~l~G~g~~~gG~v~~~ 220 (425)
T PRK06084 197 IVVHSLTKYIGGHGTSIGGIVVDS 220 (425)
T ss_pred EEEECchhcccccccceeEEEEeC
Confidence 999999998874223457777753
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=161.42 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
...++.++++++++|++ .+++++|+++|+.+++.++ +++||+|++....+......+...+++.|++++.++.+
T Consensus 54 p~~~~le~~la~l~g~~----~~~~~~sG~~Ai~~al~al-~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~- 127 (380)
T TIGR01325 54 PTVAAFEERIAALEGAE----RAVATATGMSAIQAALMTL-LQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT- 127 (380)
T ss_pred chHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC-
Confidence 44678999999999984 3678899999999999888 78999987654333223444456678899999888753
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcE
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDF 328 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df 328 (632)
++++++++++++ ++++.+...+|++|...|++ |.++||++|++++||.++..+....++ .+++|+
T Consensus 128 -----d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl---~~g~Di 193 (380)
T TIGR01325 128 -----DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL---KLGADV 193 (380)
T ss_pred -----CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch---hhCCCE
Confidence 578888887654 48999999999999999999 999999999999999998655321244 357899
Q ss_pred EEEccccccCCCCC-ce-EEEEEeCCCccc
Q 006746 329 LICSFYQIFGENPS-GF-GCLFVKKSTVPI 356 (632)
Q Consensus 329 ~~~S~hK~~G~~P~-G~-G~L~Vr~~~~~~ 356 (632)
++.|++|++|. +. .+ |+++.+++.++.
T Consensus 194 vv~S~sK~l~g-~g~~~gG~vv~~~~~~~~ 222 (380)
T TIGR01325 194 VVYSATKHIDG-QGRVMGGVIAGSEELMAE 222 (380)
T ss_pred EEeeccceecC-CCCeEEEEEEeCHHHHHH
Confidence 99999998873 32 24 555555554433
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-14 Score=159.41 Aligned_cols=201 Identities=9% Similarity=0.046 Sum_probs=140.8
Q ss_pred hccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 100 ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
+|+.. ...||++.+...+.+....+.+.... . + +.|+.......++.++++
T Consensus 24 ~~~~~--~~pi~~~~~~~~~~~~~~~~~~~~~~-----~------~----------------~~y~r~~~p~~~~Le~~l 74 (398)
T PRK07504 24 QFGET--SEALFLTQGFVYDTAEAAEARFKGED-----P------G----------------FIYSRYSNPTVDMFEKRM 74 (398)
T ss_pred CCCCC--cCCeECCCCccCCCHHHHHHHhccCc-----C------C----------------ceeecCCCchHHHHHHHH
Confidence 46555 56799999888776665543321100 0 0 001111123356889999
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHH
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEK 258 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~ 258 (632)
++++|+++ .++ +++++.|+..+..++ +++||+|++.. .|.+ ....+...+++.|++++.++ .+++++
T Consensus 75 A~l~G~~~---~~~-~~sG~~Ai~~~l~~~-l~~Gd~Vl~~~~~y~~-~~~~~~~~~~~~G~~v~~vd------~~d~e~ 142 (398)
T PRK07504 75 CALEGAED---ARA-TASGMAAVTAAILCQ-VKAGDHVVAARALFGS-CRYVVETLLPRYGIESTLVD------GLDLDN 142 (398)
T ss_pred HHHhCCCe---eeE-ecCHHHHHHHHHHHH-hCCCCEEEEcCCchhH-HHHHHHHHHhhcCeEEEEEC------CCCHHH
Confidence 99999974 344 678899998777665 68999987654 5553 22223455677899998885 267899
Q ss_pred HHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccc
Q 006746 259 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF 337 (632)
Q Consensus 259 l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~ 337 (632)
++++|+++ +++|.+.+.+|+||...|++ |.++|+++|++++||+++..|....++ .+++|+++.|++|++
T Consensus 143 l~~ai~~~------tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~---~~gaDivv~S~sK~l 213 (398)
T PRK07504 143 WEKAVRPN------TKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPL---ELGAHIVVYSATKHI 213 (398)
T ss_pred HHHhcCcC------ceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCch---hhCCCEEEeeccccc
Confidence 99988765 48999999999999999999 999999999999999998776521233 357899999999988
Q ss_pred CCCCCceEEEEEe
Q 006746 338 GENPSGFGCLFVK 350 (632)
Q Consensus 338 G~~P~G~G~L~Vr 350 (632)
|.+...+|.+++.
T Consensus 214 ~g~g~~~GG~vv~ 226 (398)
T PRK07504 214 DGQGRCLGGVVLS 226 (398)
T ss_pred cCCccceEEEEEe
Confidence 7421236554544
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=161.30 Aligned_cols=167 Identities=10% Similarity=0.170 Sum_probs=124.1
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC-CeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-KNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g-d~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
++.|+.+++++|++++ .|++|+|+++++.+++..+ .++| ++|++. ..|. .....++..|++++.++.+ +
T Consensus 60 ~~l~~~~a~~~g~~~~--~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~-----~y~~~~~~~G~~~~~v~~~-~ 130 (351)
T PRK01688 60 KAVIENYAAYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYG-----MYSVSAETIGVEIRTVPTL-D 130 (351)
T ss_pred HHHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHH-----HHHHHHHHcCCEEEEeecC-C
Confidence 4789999999999886 7999999999999999998 6776 777654 3443 2245567899999999986 4
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEecccc--CCC-CCCCCCCCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACAL--GPK-DMDSFGLSLV 324 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~--~g~-~m~~ldls~~ 324 (632)
+..+|.+++++++ ++ ++++.++..+|+||..++.+ +.++++. .++++++|.+.. .+. .+..+ +...
T Consensus 131 ~~~~d~~~l~~~~-~~------~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~-~~~~ 202 (351)
T PRK01688 131 NWQLDLPAIADNL-DG------VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGW-LAEY 202 (351)
T ss_pred CCCCCHHHHHHhc-cC------CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHH-HhhC
Confidence 5678999998877 33 48999999999999999987 6666542 267899999842 111 01111 1222
Q ss_pred CCcEEEEccccccCCCCCce--EEEEEeCCCccccC
Q 006746 325 RPDFLICSFYQIFGENPSGF--GCLFVKKSTVPILV 358 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G~--G~L~Vr~~~~~~L~ 358 (632)
+-=+++.||.|+||. .|+ |+++.+++.++.++
T Consensus 203 ~n~iv~rSfSK~~gl--aGlRiGy~i~~~~~i~~l~ 236 (351)
T PRK01688 203 PHLVILRTLSKAFAL--AGLRCGFTLANEEVINLLL 236 (351)
T ss_pred CCEEEEecchHhhcC--HHHHHhHHhCCHHHHHHHH
Confidence 234788999999994 475 99998887765554
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-15 Score=159.79 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=117.2
Q ss_pred HHHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|++++ | ++++ +|++|+|+|+|+.++..++ .++||+|++.. .|.. ....++..|++++.+
T Consensus 73 ~~lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~-----~~~~~~~~g~~~v~~ 144 (398)
T PRK08363 73 PELREAIVKREKRKNGVDITPD--DVRVTAAVTEALQLIFGAL-LDPGDEILIPGPSYPP-----YTGLVKFYGGVPVEY 144 (398)
T ss_pred HHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcc-----hHHHHHHcCCEEEEe
Confidence 36788888876 3 4544 7999999999999999998 78999987643 4442 234566789888877
Q ss_pred -eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCC
Q 006746 246 -EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDM 316 (632)
Q Consensus 246 -~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m 316 (632)
+.+..+..++.+++++.+.++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.+... +..
T Consensus 145 ~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~- 217 (398)
T PRK08363 145 RTIEEEGWQPDIDDIRKKITEK------TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKH- 217 (398)
T ss_pred ccccccCCcCCHHHHHhhCCcc------eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcc-
Confidence 444334468889998887653 488999999999999998 77 88899999999999997431 110
Q ss_pred CC-CCCCCCCCcEEEEccccccCCCCCceEEEEE
Q 006746 317 DS-FGLSLVRPDFLICSFYQIFGENPSGFGCLFV 349 (632)
Q Consensus 317 ~~-ldls~~~~Df~~~S~hK~~G~~P~G~G~L~V 349 (632)
.+ ..+....-=+++.|+.|.|+.+..++|++++
T Consensus 218 ~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~ 251 (398)
T PRK08363 218 VSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYF 251 (398)
T ss_pred cCHHHcCcCCcEEEEecchhccCCccceEEEEEE
Confidence 01 1111111236678999998764456788887
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=158.27 Aligned_cols=168 Identities=9% Similarity=0.150 Sum_probs=124.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.|++++|++++ .|++|+|+++++.++...+ .++||+|++.. .|+ .....++..|+++..++.+ .+
T Consensus 89 ~~lr~~ia~~~~~~~~--~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~-----~y~~~~~~~g~~~~~v~~~-~~ 159 (380)
T PLN03026 89 RRLRAALAEDSGLESE--NILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFG-----MYVFDAAVNGAEVIKVPRT-PD 159 (380)
T ss_pred HHHHHHHHHHhCcChh--hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChH-----HHHHHHHHcCCEEEEeecC-CC
Confidence 4799999999999876 7999999999999999988 68999977543 442 2234456789999999886 45
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC--CCCCCCCC-CCCCCCc
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG--PKDMDSFG-LSLVRPD 327 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~--g~~m~~ld-ls~~~~D 327 (632)
..+++++|++++... +++++.++..+|+||..+|.+ +.++++.. +++++|.+..- +.. ..+. +...+-.
T Consensus 160 ~~~d~~~l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~-~~~~~~~~~~~v 232 (380)
T PLN03026 160 FSLDVPRIVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQE-SRMKWVKKYDNL 232 (380)
T ss_pred CCcCHHHHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCc-chHHHHHhCCCE
Confidence 678999999988321 258999999999999999999 99998764 89999997431 110 0111 2233446
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccc
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPI 356 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~ 356 (632)
+++.|+-|.||.+.-.+|+++..++.++.
T Consensus 233 iv~~SfSK~~glaGlRiGy~~~~~~~i~~ 261 (380)
T PLN03026 233 IVLRTFSKRAGLAGLRVGYGAFPLSIIEY 261 (380)
T ss_pred EEEecchHhhcCccccceeeecCHHHHHH
Confidence 89999999999422235777766555443
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=164.54 Aligned_cols=161 Identities=13% Similarity=0.118 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
....++.++++++++|++ ..++++|+++|+..++.++ +++||+|++. ..|++ ....+...+++.|++++.++.
T Consensus 56 ~p~~~~le~~lA~l~g~~----~~v~~~sG~~Ai~~al~~l-~~~Gd~Vl~~~~~y~~-t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 56 NPTTDVLEQRIAALEGGV----AALAVASGQAAITYAILNL-AQAGDNIVSSSYLYGG-TYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred ChhHHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEECCCcHH-HHHHHHHHHHHcCcEEEEECC
Confidence 344578999999999974 4788999999999999887 7899997654 45554 344445667889999998874
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+ ++++++++|+++ ++++.+...+|++|...|++ |+++|+++|+++++|.++..|....++ .+++
T Consensus 130 ~------d~~~l~~~l~~~------t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l---~~g~ 194 (418)
T TIGR01326 130 D------DPEEFEKAIDEN------TKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPI---DHGA 194 (418)
T ss_pred C------CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCch---hcCC
Confidence 2 678999888764 48999999999999999999 999999999999999998776421233 3578
Q ss_pred cEEEEccccccCCCCCc--eEEEEEeCC
Q 006746 327 DFLICSFYQIFGENPSG--FGCLFVKKS 352 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G--~G~L~Vr~~ 352 (632)
|+++.|++|++| +.| +|.+++.++
T Consensus 195 Divv~S~sK~l~--g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 195 DIVVHSATKYIG--GHGTAIGGVIVDGG 220 (418)
T ss_pred eEEEECcccccc--CCccceEEEEEecc
Confidence 999999999888 435 788888654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-14 Score=154.79 Aligned_cols=169 Identities=12% Similarity=0.130 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...++..+.++++++++ .+++|+|+|+|+.+++.++.+++||+|++ ...|++. . ..+...|++++.++++
T Consensus 31 ~~~~~~e~~la~~~g~~----~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~-~----~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 31 PFSRRCETWLENRTGTK----KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVST-A----NAFVLRGAKIVFVDIR 101 (376)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHH-H----HHHHHcCCEEEEEecC
Confidence 45678888899999884 58999999999999999988899999765 5677652 2 2335679999999998
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC--
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR-- 325 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~-- 325 (632)
..+..+|+++++++++++ +++++.. +.+|...|++ |+++|+++|+++++|++|+.+. ..+-...+
T Consensus 102 ~~~~~~d~~~le~~i~~~------tk~Iip~---~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~---~~~~~~~g~~ 169 (376)
T TIGR02379 102 PDTMNIDETLIESAITHR------TKAIVPV---HYAGVACDMDTIMALANKHQLFVIEDAAQGVMS---TYKGRALGSI 169 (376)
T ss_pred CCcCCCCHHHHHHhcCcC------ceEEEEe---CCCCCccCHHHHHHHHHHCCCEEEEECccccCC---ccCCcccCCC
Confidence 555678999999988764 4777643 4689999999 9999999999999999998874 12222222
Q ss_pred CcEEEEcccc--ccCCCCCceEEEEEe-CCCccccCCC
Q 006746 326 PDFLICSFYQ--IFGENPSGFGCLFVK-KSTVPILVDN 360 (632)
Q Consensus 326 ~Df~~~S~hK--~~G~~P~G~G~L~Vr-~~~~~~L~~~ 360 (632)
.|+.++|||+ .+...+. .|+++.+ ++..++++..
T Consensus 170 ~~~~~fSf~~~K~l~~g~~-gG~v~~~~~~~~~~~~~~ 206 (376)
T TIGR02379 170 GHLGTFSFHETKNYTSGGE-GGALLINDQAFIERAEII 206 (376)
T ss_pred CCEEEEeCCCCCcCcccCC-ceEEEECCHHHHHHHHHH
Confidence 2999999996 3331033 3655665 4555555543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-14 Score=155.33 Aligned_cols=344 Identities=13% Similarity=0.140 Sum_probs=215.3
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|+|.++ .|.-++.+++++.+.+..... +.. .+ -..+...++.++++
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~------~~~---------~~---------~~~~~~~~l~~~l~ 89 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTH------FSL---------GF---------FYNEPAVELAELLL 89 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcC------ccC---------cc---------cCCHHHHHHHHHHH
Confidence 5677999876 455677888876654422100 000 00 01356678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEEE-eccccchhhHHHHHHHHh---------cCCEEEEEeccC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PFMSVKNLLT-VYDYESEAVEAMIRTSEK---------RGARVMSAEFSW 249 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~gd~ilt-~~d~~s~~v~~~~~~a~~---------~G~~v~~v~~~~ 249 (632)
++++.+.+ .|+|++++|+|+..++..+ .+.++++|++ ...||.....++ ..... .+.++..+|.+.
T Consensus 90 ~~~~~~~~--~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (413)
T cd00610 90 ALTPEGLD--KVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGAL-SLTGSKKYRGGFGPLLPGVLHVPYPY 166 (413)
T ss_pred HhCCCCCC--EEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHH-HhcCCccccccCCCCCCCcEEeCCCc
Confidence 99997544 7999999999999988876 3466788664 456776333332 22111 122455555531
Q ss_pred C-----ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--C
Q 006746 250 P-----RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--M 316 (632)
Q Consensus 250 ~-----~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m 316 (632)
+ ....++++|++.+.+. +.+++++++..+.+.+|...| ++ +.++|+++|+++++|.++.. +.. .
T Consensus 167 ~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~ 243 (413)
T cd00610 167 RYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKM 243 (413)
T ss_pred cccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcch
Confidence 1 1223678888888752 134688999999999999998 88 99999999999999998753 211 0
Q ss_pred CCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccC--CCCCCCceeecccccccccccccCCCCCCccccchh
Q 006746 317 DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV--DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 394 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~--~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 394 (632)
..++.....||++++| |.+|. +..+|+++.+++.++.+. ....+
T Consensus 244 ~~~~~~~~~~d~~t~s--K~l~~-g~~~g~~~~~~~~~~~~~~~~~~~~------------------------------- 289 (413)
T cd00610 244 FAFEHFGVEPDIVTLG--KGLGG-GLPLGAVLGREEIMDAFPAGPGLHG------------------------------- 289 (413)
T ss_pred hhHhhcCCCCCeEEEc--ccccC-ccccEEEEEcHHHHHhhccCCCCCC-------------------------------
Confidence 1222223467887665 98774 345899998887766551 10000
Q ss_pred hhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHH
Q 006746 395 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 474 (632)
Q Consensus 395 ~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~ 474 (632)
+|.. .+.....+. .++|+.+.+ +.+.+|++.+.
T Consensus 290 ------~t~~--------------~~~~~~~a~------------------------~a~l~~l~~---~~~~~~~~~~~ 322 (413)
T cd00610 290 ------GTFG--------------GNPLACAAA------------------------LAVLEVLEE---EGLLENAAELG 322 (413)
T ss_pred ------CCCC--------------cCHHHHHHH------------------------HHHHHHHHh---ccHHHHHHHHH
Confidence 0000 000111111 166777765 46778999999
Q ss_pred HHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC----ccCHHHHHHHHHhCCcEEccCccCChHHHh
Q 006746 475 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE----KIEPVLVQKLADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 475 ~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~----~i~~~~V~kla~~~gI~lr~G~~c~~~~~~ 550 (632)
+++++.|.++... .+.+. . ...+|+++.+.+.+..+. ......+.+.+.++||.+..+
T Consensus 323 ~~l~~~l~~~~~~----~~~~~---~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~--------- 384 (413)
T cd00610 323 EYLRERLRELAEK----HPLVG---D--VRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPS--------- 384 (413)
T ss_pred HHHHHHHHHHHhh----CCcEE---E--eecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeec---------
Confidence 9999999887211 02221 1 123688888888653110 012344445555678887633
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+...+|+++++.+|.+||+++++.|++.|
T Consensus 385 -------------------------------~~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 385 -------------------------------GGNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred -------------------------------CCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 12489999999999999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=157.01 Aligned_cols=170 Identities=12% Similarity=0.136 Sum_probs=123.4
Q ss_pred HHHHHHHHHc----CCCCCCc-cEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDFL----NISENDY-GMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey-~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.+++++ |.+.+.. +|++|+|+++|+.+++..+ .++||+|++.. .|+. ....++..|++++.+++
T Consensus 67 ~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~Vlv~~p~y~~-----~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 67 ELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLAL-VEPGDEVVLFQPLYDA-----YLPLIRRAGGVPRLVRL 140 (387)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchh-----hHHHHHHcCCEEEEEec
Confidence 4566666554 5433333 7999999999999999988 68899977543 4432 23456788999999998
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMDSF 319 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~~l 319 (632)
+..+..++.+++++.+.++ ++++++++.+|+||..+| ++ |+++|+++++++++|.+... +....++
T Consensus 141 ~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 214 (387)
T PRK08912 141 EPPHWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPL 214 (387)
T ss_pred CcccCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcCh
Confidence 6445678999999988653 488899999999999998 55 67889999999999987521 1100111
Q ss_pred -CCCC-CCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 320 -GLSL-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 320 -dls~-~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
.+.. ...++++.|+.|.||. .| +|++++.++.++.+
T Consensus 215 ~~~~~~~~~~i~~~S~SK~~g~--~GlRiG~~~~~~~~~~~l 254 (387)
T PRK08912 215 MTLPGMRERTVKIGSAGKIFSL--TGWKVGFVCAAPPLLRVL 254 (387)
T ss_pred hhCCCccCceEEEeechhhccC--cCceeEEEecCHHHHHHH
Confidence 1111 2457999999999994 47 89999877665544
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=156.15 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.-..+.+++|+++.|.+ .+++++|+++|+.+++.++ +++||+|++. ..|.+ ....+...++..|++++.++..
T Consensus 64 p~~~~Le~~iA~~~g~~----~~l~~~sG~~Ai~~al~~l-l~~Gd~Vl~~~~~y~~-~~~~~~~~~~~~G~~v~~vd~~ 137 (400)
T PRK06234 64 PTSTEVENKLALLEGGE----AAVVAASGMGAISSSLWSA-LKAGDHVVASDTLYGC-TFALLNHGLTRYGVEVTFVDTS 137 (400)
T ss_pred ccHHHHHHHHHHHhCCC----cEEEEcCHHHHHHHHHHHH-hCCCCEEEEecCccch-HHHHHHHHHhhCCeEEEEECCC
Confidence 34568999999999974 3677889999999888877 7899997755 45554 3434445567889999988753
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccCCCCCCCCCCCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALGPKDMDSFGLSLVR 325 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~g~~m~~ldls~~~ 325 (632)
+++++++++++++ +++.+...+|+||...|++ |.++|+++ |+++++|.+...+..-.++ .++
T Consensus 138 ------d~e~l~~~i~~~t------klI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l---~~g 202 (400)
T PRK06234 138 ------NLEEVRNALKANT------KVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL---QLG 202 (400)
T ss_pred ------CHHHHHHHhccCC------eEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch---hhC
Confidence 6889999887654 8999999999999999999 99999996 9999999998776421233 347
Q ss_pred CcEEEEccccccCCCCCc---eEEEEEeCCCcccc
Q 006746 326 PDFLICSFYQIFGENPSG---FGCLFVKKSTVPIL 357 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G---~G~L~Vr~~~~~~L 357 (632)
.|+++.|++|++|. + | .|+++.+++.++.+
T Consensus 203 ~Divv~S~sK~l~g-~-g~~~gG~v~~~~~~~~~l 235 (400)
T PRK06234 203 ADVVVHSATKYLNG-H-GDVIAGFVVGKEEFINQV 235 (400)
T ss_pred CcEEEeeccccccC-C-CCceeEEEEecHHHHHHH
Confidence 89999999998873 3 4 58888877655444
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-14 Score=155.44 Aligned_cols=322 Identities=13% Similarity=0.105 Sum_probs=190.6
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCE
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~ 241 (632)
.||.. ....+.++++++++|.+ ..++|++|.++.+ .++.++ +++||+|+++. .|.+ .... .+..+++
T Consensus 38 ~yg~~--~~~~~LE~~lA~~~g~e---~al~~~sG~~a~~-~~i~~l-~~~GD~Vl~~~~~h~s-~~~~----~~l~~~~ 105 (392)
T PLN03227 38 FYGTI--DAHLELEQCMAEFLGTE---SAILYSDGASTTS-STVAAF-AKRGDLLVVDRGVNEA-LLVG----VSLSRAN 105 (392)
T ss_pred ccCCh--HHHHHHHHHHHHHhCCC---cEEEecCcHHHHH-HHHHHh-CCCCCEEEEeccccHH-HHHH----HHHcCCe
Confidence 35544 36789999999999985 2688888877777 444446 78999988665 4443 3322 2334567
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcC-----cCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKG-----KKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~-----~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~ 315 (632)
++.++.. + .-+.+.+.+.+.+.. ...+++++|++..+.+.+|...|++ +.++|+++|+++++|-++..|..
T Consensus 106 ~~~~~~~--d-~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~ 182 (392)
T PLN03227 106 VRWFRHN--D-MKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTL 182 (392)
T ss_pred EEEeCCC--C-HHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccccccc
Confidence 7666543 1 112333333443210 0123578999999999999999999 99999999999999999875531
Q ss_pred CCC--------CCCC-CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCC
Q 006746 316 MDS--------FGLS-LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 316 m~~--------ldls-~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
.. +++. ..++|++++|+.|.+| |. .|++..+++.++.++....+ .
T Consensus 183 -g~~G~g~~~~~g~~p~~~~Div~~slsk~~g--~~-gg~v~~~~~~~~~~~~~~~~-~--------------------- 236 (392)
T PLN03227 183 -GKSGRGSLEHAGLKPMVHAEIVTFSLENAFG--SV-GGMTVGSEEVVDHQRLSGSG-Y--------------------- 236 (392)
T ss_pred -CCCCCcHHHHcCCCCCCCceEEEeechhhhh--cc-CcEEecCHHHHHHHHHhCcC-c---------------------
Confidence 11 1221 2356999999999888 54 24555665554333211000 0
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
.|.+ +.|.+.+.. ...+++.+.+ .+.+
T Consensus 237 -----------------~~~~------------~~~p~~~~a----------------------a~~al~~~~~--~~~~ 263 (392)
T PLN03227 237 -----------------CFSA------------SAPPFLAKA----------------------DATATAGELA--GPQL 263 (392)
T ss_pred -----------------cccC------------CCCHHHHHH----------------------HHHHHHHHhc--CHHH
Confidence 0000 000000000 0134433322 3556
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEEC--CCCCCCCCcEEEEEEccCCCCc-cC----HHHHHHHHHhCCcEEc
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYG--PKIRFDRGPALAFNVFDWKREK-IE----PVLVQKLADRENISLS 539 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iyg--p~~~~~rg~ivaFnv~~~~G~~-i~----~~~V~kla~~~gI~lr 539 (632)
.++.+.+.++|++.|.+..++. ...+-| .-.....++|+.+.+.+..... .+ ...+.+.+.++||.++
T Consensus 264 ~~~l~~~~~~l~~~L~~~~~~~-----~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ 338 (392)
T PLN03227 264 LNRLHDSIANLYSTLTNSSHPY-----ALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVV 338 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCcc-----ccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEE
Confidence 7788899999999998753321 001111 0011236889999885511000 00 1245555666798886
Q ss_pred cCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 540 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 540 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+-. ..+ ...+...||++++..+|.|||+++++.|++.+++
T Consensus 339 ~~~~~~~---~~~--------------------------~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~ 382 (392)
T PLN03227 339 STGGHVK---KFL--------------------------QLVPPPCLRVVANASHTREDIDKLLTVLGEAVEA 382 (392)
T ss_pred ecccccC---CcC--------------------------CCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 3111000 000 1224578999999999999999999999998765
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=154.37 Aligned_cols=242 Identities=12% Similarity=0.081 Sum_probs=160.3
Q ss_pred hCCCCCCc--hhHHHHHHhhccCcCC-CCceEeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCcccccccccccc
Q 006746 83 AYPQYFDT--YQIDQIRAKEYYQLSL-SNHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNL 158 (632)
Q Consensus 83 ~~p~y~~~--~~~d~iR~~ef~~L~~-~~~vyLD~ag~gl~~~~~~~a~~~-~~~~~~~~~P~~~~~~p~f~~~~~~~n~ 158 (632)
.-|+-+.. .-++++++.-.|+... ...-|+.|--++..+.+++-.+.. .+.... ..|. ..|
T Consensus 102 ~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~sa~n~~~-----~~~~----------~sP 166 (539)
T PLN02590 102 SAPERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVG-----FTWL----------TSP 166 (539)
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHHhccccc-----CCcc----------cCc
Confidence 34554432 3566666543444422 345699999999888888887532 221110 0121 122
Q ss_pred ccccccccchhHHHHHHHHHHHHHcCCCCC-----CccEEEeCCHHHHHHHHHhhCC---CC----CC-Ce-EEE-eccc
Q 006746 159 KTQLLHGGQESGLESAMKKRIMDFLNISEN-----DYGMVFTANRTSAFKLLAESYP---FM----SV-KN-LLT-VYDY 223 (632)
Q Consensus 159 ~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~-----ey~vvft~naT~al~lv~~sl~---~~----~g-d~-ilt-~~d~ 223 (632)
...+++.++-+.+++++|.++. .-.=+||+++|+|.-+.+.... .+ .+ .+ +++ +.+-
T Consensus 167 --------a~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~a 238 (539)
T PLN02590 167 --------AATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQT 238 (539)
T ss_pred --------hhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCc
Confidence 2457888999999999999853 1246789999987644322210 11 11 12 343 3333
Q ss_pred cchhhHHHHHHHHhcCC---EEEEEeccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHh
Q 006746 224 ESEAVEAMIRTSEKRGA---RVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQ 298 (632)
Q Consensus 224 ~s~~v~~~~~~a~~~G~---~v~~v~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~ 298 (632)
|+ .+...++-.|+ .++.||++. +++++++++|+++|.+.++....+-+|+-+.-+..||..=|++ |.++|+
T Consensus 239 H~----Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~ 314 (539)
T PLN02590 239 HS----SFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAK 314 (539)
T ss_pred hH----HHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence 43 23445666777 588899874 3578999999999987543334567889999999999999999 999999
Q ss_pred hCCcEEEEeccccCCCC----CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 299 ENDWHILIDACALGPKD----MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 299 ~~g~~vlvDaaq~~g~~----m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
++|++++||||-.+..- ...+.-..-.+|-+++++|||++. |.++|+++||+.
T Consensus 315 ~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~-p~~cg~llvr~~ 371 (539)
T PLN02590 315 KYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFA-NQTCSPLWVKDR 371 (539)
T ss_pred HhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCc-CcCEEEEEecCH
Confidence 99999999987544220 011111224679999999999887 999999999985
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-14 Score=152.53 Aligned_cols=331 Identities=15% Similarity=0.097 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+..+++..+++++++|+. .++.++|+|.||.+++.++.+++||+|++ .+.+++ .+ ......|++++.+++
T Consensus 24 g~~~~~fE~~~a~~~g~~----~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~-~~----~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVK----YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPA-TA----SAILWAGAEPVFVDI 94 (363)
T ss_dssp SHHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-TH-HH----HHHHHTT-EEEEE-B
T ss_pred CHHHHHHHHHHHHHhCCC----eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchH-HH----HHHHHhccEEEEEec
Confidence 467789999999999975 58889999999999999999999999764 567664 22 334568999999999
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCC--CCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMD--SFGLSLV 324 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~--~ldls~~ 324 (632)
+..++.+|+++++++|++++ +.++++|. -|...+++ |.++|+++|+.+|-|+||+.|.... .++ .+
T Consensus 95 ~~~~~~id~~~~~~~i~~~t------~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G--~~ 163 (363)
T PF01041_consen 95 DPETLNIDPEALEKAITPKT------KAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVG--SF 163 (363)
T ss_dssp ETTTSSB-HHHHHHHHHTTE------EEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETT--SS
T ss_pred cCCcCCcCHHHHHHHhccCc------cEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEecc--CC
Confidence 98899999999999999865 78888876 78888999 9999999999999999999975211 122 22
Q ss_pred CCcEEEEccc--cccCCCCCceEEEEEeCCCc-cccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 325 RPDFLICSFY--QIFGENPSGFGCLFVKKSTV-PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 325 ~~Df~~~S~h--K~~G~~P~G~G~L~Vr~~~~-~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
+ |+.++||| |.+.. ..-|+++++++.+ ++++....-|... .....++. +..
T Consensus 164 g-d~~~fSf~~~K~i~~--geGG~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~---------------------~~~ 217 (363)
T PF01041_consen 164 G-DIAIFSFHPTKIITT--GEGGAVVTNDPELAERARALRNHGRSR--DAFRRYRH---------------------ELP 217 (363)
T ss_dssp S-SEEEEESSTTSSS-S--SS-EEEEESTHHHHHHHHHHTBTTEET--SECSTTEE---------------------SSS
T ss_pred C-CceEecCCCCCCCcC--CCCeeEEecHHHHHHHhhhhhccCcCc--cccccccc---------------------ccc
Confidence 3 99999998 76652 2347777766443 3332211112210 00000000 000
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
+.+ +-...++.+. -++.++.+ ++.+.++-+.+.+++.+.|
T Consensus 218 -~g~------------n~rm~~~~AA-------------------------igl~QL~~--L~~~~~~R~~~a~~y~~~L 257 (363)
T PF01041_consen 218 -PGY------------NFRMSELQAA-------------------------IGLAQLKR--LDEIIARRRENAQRYREAL 257 (363)
T ss_dssp -S--------------B-B-BHHHHH-------------------------HHHHHHHT--HHHHHHHHHHHHHHHHHHH
T ss_pred -CCc------------ccccHHHHHH-------------------------HHHHHHHH--hhhhHHHHHHHHHHHHHHH
Confidence 000 0011122211 34444443 5777788889999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCC--cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRG--PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg--~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
..+ +.+..........+. ....+.+.+... .+...+.+.+.+.||.++... +.+-.....
T Consensus 258 ~~~--------~~~~~~~~~~~~~~~~~~~f~i~~~~~~~--~~rd~l~~~L~~~GI~~~~~~-~~pl~~~~~------- 319 (363)
T PF01041_consen 258 AGI--------PGIKPPPIPDGAERSSYYRFPIRLPDEAL--ADRDELVEALRARGIETRPHY-PKPLHRQPV------- 319 (363)
T ss_dssp TTG--------TTEEEEGCGTTTEEBCESSEEEEETCCGC--STHHHHHHHHHHTTBEEBCST-SSCGGGSGG-------
T ss_pred hcC--------CCccccccccccccccccccccccccccc--chHHHHHHHHHHCCCcccccc-cCchhhhHH-------
Confidence 987 556554433212112 233444444222 467788888888899998765 111110000
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
+...........++ ........+.+-++..-+.+||+++++.|+
T Consensus 320 ~~~~~~~~~~~~P~----ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 320 YRSYPYYAPGDLPN----AERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp GTTGEEEETSSSHH----HHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHhcCccccCCCHH----HHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 00000000000000 001123589999999999999999999875
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-13 Score=148.44 Aligned_cols=178 Identities=11% Similarity=0.090 Sum_probs=136.8
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEE
Q 006746 167 QESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 167 ~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
...+++.++-+.+++++|.+++++.=++|+++|+|.-....... ..+...++.+.+-|. ++ ...++-.|++++.|
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~-Sv---~KAa~llgi~~~~V 205 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY-SV---FKAARMYRMECVKV 205 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccH-HH---HHHHHhcCCcceEe
Confidence 45688899999999999998766566889999998776443321 112224445554443 23 45567789999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCc-----EEEEeccccC---CC--
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDW-----HILIDACALG---PK-- 314 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~-----~vlvDaaq~~---g~-- 314 (632)
|.+ +++++|.++|+++|.+++ ..+-+|+.+.-++.+|..=|++ |.++|+++|+ +++||||-.+ |.
T Consensus 206 p~d-~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~ 281 (470)
T PLN02263 206 DTL-VSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVK 281 (470)
T ss_pred ccC-CCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcc
Confidence 998 788999999999998754 2457888899999999999999 9999999996 9999998433 21
Q ss_pred CCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCc
Q 006746 315 DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 315 ~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~ 354 (632)
....+|+.. ++|-+++++|||++. |.+.|++++|+...
T Consensus 282 ~~~~~df~~-~vDSIsvD~HK~l~~-P~~cgvll~R~~~~ 319 (470)
T PLN02263 282 RAPKVTFKK-PIGSVSVSGHKFVGC-PMPCGVQITRMEHI 319 (470)
T ss_pred cccccCCCc-CccEEEECCccccCC-CcCEEEEEEehhhH
Confidence 112356654 499999999999998 99999999997654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=154.51 Aligned_cols=170 Identities=12% Similarity=0.118 Sum_probs=121.5
Q ss_pred HHHHHHHHHc----CCCCC-CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDFL----NISEN-DYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~-ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.|++++ |.+.+ +..|++|+|+++++.+++..+ .++||+|++. ..|+. ....++..|+++..++.
T Consensus 71 ~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~-----~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 71 AYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPV-----YRIGTLFAGGEPYEMPL 144 (383)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcc-----hHHHHHhcCCEEEEEec
Confidence 5677777665 44322 225899999999999999998 6899997754 45543 23346778999999998
Q ss_pred cCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEecccc----CCCCCCC
Q 006746 248 SWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACAL----GPKDMDS 318 (632)
Q Consensus 248 ~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~----~g~~m~~ 318 (632)
+.. ...++.+++++.+.++ ++++.+++.+|+||..+|. + |+++|+++|+++++|-+.. .+....+
T Consensus 145 ~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~ 218 (383)
T TIGR03540 145 KEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPS 218 (383)
T ss_pred CcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcC
Confidence 633 3457899998887643 4889999889999999994 5 7889999999999999864 1211011
Q ss_pred C-CCC-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 319 F-GLS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 319 l-dls-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
+ .+. ..+..+++.|+-|.|| ..| +|+++..+++++.+
T Consensus 219 ~~~~~~~~~~~i~~~SfSK~~g--~~GlRiG~~i~~~~l~~~~ 259 (383)
T TIGR03540 219 FLEVDGAKDVGIEFHSLSKTYN--MTGWRIGMAVGNADLIAGL 259 (383)
T ss_pred cccCCCcccCEEEEEecccccC--CccceeeEEeCCHHHHHHH
Confidence 1 111 1234578889999999 447 89988776655433
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-14 Score=152.58 Aligned_cols=337 Identities=12% Similarity=0.095 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...++..+.+++++|++ .+++|+|+|+|+.+++..+.+++||+|+++ ..|++ . ...++..|++++.++++
T Consensus 31 ~~~~~~e~~la~~~g~~----~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~-~----~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSA----KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVS-T----ANAFVLRGAKIVFVDIR 101 (375)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHH-H----HHHHHHcCCEEEEEecC
Confidence 55677888899999984 589999999999998888777899997754 56654 2 33456789999999998
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
..+..++++++++++++++ +++.+.| .+|...|++ |+++|+++|+.+++|++|+.+.....-.+.. -.|
T Consensus 102 ~~~~~~d~~~le~~i~~~t------k~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~-~~~ 171 (375)
T PRK11706 102 PDTMNIDETLIEAAITPKT------RAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGT-IGH 171 (375)
T ss_pred CCcCCcCHHHHHHhcCCCC------eEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeec-CcC
Confidence 5556789999999987643 7777654 599999999 9999999999999999998875111111111 248
Q ss_pred EEEEccc--cccCCCCCce-EEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcccc
Q 006746 328 FLICSFY--QIFGENPSGF-GCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 403 (632)
Q Consensus 328 f~~~S~h--K~~G~~P~G~-G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~ 403 (632)
+-++||| |.++ + |. |++++++ +..++++.....|.... .++.... ... .. ...|+.
T Consensus 172 ~~~~Sf~~~K~l~--~-g~gG~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~---~~~-------~~--~~~g~~ 231 (375)
T PRK11706 172 IGCFSFHETKNYT--A-GEGGALLINDPALIERAEIIREKGTNRS-----QFFRGQV---DKY-------TW--VDIGSS 231 (375)
T ss_pred EEEEeCCCCcccc--c-cCCeEEEECCHHHHHHHHHHHHcCCCcc-----hhhccCC---Ccc-------ee--eecccc
Confidence 9999999 9887 5 44 4455543 33333332211121100 0000000 000 00 001111
Q ss_pred CCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Q 006746 404 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK 483 (632)
Q Consensus 404 ~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~ 483 (632)
.. ..++.+. .++..++. ++.+.++-+.+.+++.+.|..
T Consensus 232 ~~---------------~~~~~aa-------------------------~~~~ql~~--l~~~~~~R~~~~~~~~~~L~~ 269 (375)
T PRK11706 232 YL---------------PSELQAA-------------------------YLWAQLEA--ADRINQRRLALWQRYYDALAP 269 (375)
T ss_pred cC---------------cCHHHHH-------------------------HHHHHHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 11 1111111 23333433 577788888888999999887
Q ss_pred cCCCCCCCCCcEEEE-CCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhh
Q 006746 484 LQHPNTEGNALVKIY-GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK 562 (632)
Q Consensus 484 l~h~~~~G~p~v~Iy-gp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~ 562 (632)
+.+ .+.+++. .|.........+.+.+.+ + .+...+.+.+.++||.++..+....+ ........ ..
T Consensus 270 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~r~~l~~~L~~~gI~~~~~~~p~~~--~~~~~~~~--~~- 335 (375)
T PRK11706 270 LAE-----AGRIELPSIPDDCKHNAHMFYIKLRD--L--EDRSALINFLKEAGIMAVFHYIPLHS--SPAGERFG--RF- 335 (375)
T ss_pred CCc-----CCeeecCCCCCCCceeeEEEEEEECC--c--CCHHHHHHHHHHCCCCccccCCccCc--chhhHhcC--CC-
Confidence 621 1123322 121111112333344432 1 36777888888899998755321110 00000000 00
Q ss_pred hhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 563 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
...| ++. .......|.+-+|..-+.+||+++++.|++++
T Consensus 336 ~~~~-----p~a----~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 336 HGED-----RYT----TKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred CCCC-----hHH----HHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 0000 000 01123478888888889999999999999875
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=156.44 Aligned_cols=170 Identities=14% Similarity=0.210 Sum_probs=122.8
Q ss_pred HHHHHHHHHcC----C--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFLN----I--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l~----a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.++++++ . +++ .+|++|+|+++|+.+++.++ .++||+|++. ..|+. ....++..|+++..++
T Consensus 61 ~lr~~ia~~~~~~~g~~~~~~-~~i~~t~G~~~al~~~~~~l-~~~gd~vl~~~p~y~~-----~~~~~~~~g~~~~~~~ 133 (378)
T PRK07682 61 ELRQEIAKYLKKRFAVSYDPN-DEIIVTVGASQALDVAMRAI-INPGDEVLIVEPSFVS-----YAPLVTLAGGVPVPVA 133 (378)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHh-CCCCCEEEEeCCCchh-----hHHHHHHcCCEEEEee
Confidence 66777777764 3 332 26999999999999999998 6899997754 35542 2344566799998888
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCC---CCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPK---DMDS 318 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~---~m~~ 318 (632)
.+.. +..++.+++++++.++ ++++.++..+|+||..+| ++ |+++|+++++++++|.+..... ...+
T Consensus 134 ~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~ 207 (378)
T PRK07682 134 TTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTS 207 (378)
T ss_pred cCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCC
Confidence 7532 4568999999888653 478888888999999997 55 7788999999999999754311 0001
Q ss_pred -CCCC-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccC
Q 006746 319 -FGLS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILV 358 (632)
Q Consensus 319 -ldls-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~ 358 (632)
..+. ...-.+++.|+.|.||. .| +|+++.++++++.+.
T Consensus 208 ~~~~~~~~~~~i~~~S~SK~~~~--~GlR~G~~~~~~~~i~~l~ 249 (378)
T PRK07682 208 FASIKGMRERTILISGFSKGFAM--TGWRLGFIAAPVYFSEAML 249 (378)
T ss_pred hhhcccccCCEEEEecCcccccC--hhhhhhhhhcCHHHHHHHH
Confidence 1111 12346899999999995 37 899998877665543
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=152.08 Aligned_cols=326 Identities=15% Similarity=0.120 Sum_probs=208.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+..+.+..+.+++++|+. ..+.++|+|.||.+++.++.+.+||+|+ +++.+.+ ..+. ....|+++++|.+
T Consensus 33 G~~v~~FE~~~ae~~G~k----~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvA-Tan~----i~~~Ga~PVFvDi 103 (374)
T COG0399 33 GPFVRRFEQAFAEYLGVK----YAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVA-TANA----VLLVGAKPVFVDI 103 (374)
T ss_pred ChHHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHH-HHHH----HHHcCCeEEEEec
Confidence 456678888999999997 4788999999999999988899999976 4566664 3333 3457999999999
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC-----CCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-----MDSFGL 321 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-----m~~ldl 321 (632)
|+.+..+|++.|+++|++++ |.++..|. -|...+++ |.++|+++|++|+-||||+.|.. ...++
T Consensus 104 d~~T~nid~~~ie~aIt~~t------KAIipVhl---~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~G- 173 (374)
T COG0399 104 DPDTLNIDPDLIEAAITPRT------KAIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFG- 173 (374)
T ss_pred CCcccCCCHHHHHHHcccCC------eEEEEehh---ccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCccccccc-
Confidence 98889999999999999865 66666665 89999999 99999999999999999999752 22333
Q ss_pred CCCCCcEEEEccc--cccCCCCCceEEEEEeCC-Cc-cccCCC-CCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 322 SLVRPDFLICSFY--QIFGENPSGFGCLFVKKS-TV-PILVDN-TSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 322 s~~~~Df~~~S~h--K~~G~~P~G~G~L~Vr~~-~~-~~L~~~-~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
|+.++||| |.++. |=|.+++-++ .+ ++++.. .. |.... ....||..
T Consensus 174 -----d~~~fSF~~~K~itt---gEGGav~tnd~ela~k~~~lr~h-G~~~~--~~~~y~~~------------------ 224 (374)
T COG0399 174 -----DIGAFSFHATKNLTT---GEGGAVVTNDEELAEKARSLRNH-GLSRD--AVFKYLHE------------------ 224 (374)
T ss_pred -----ceEEEEecCCCCccc---cCceEEEeCCHHHHHHHHHHHHh-CcCCC--ccccceee------------------
Confidence 89999999 66662 5555555443 22 222211 11 32210 00011110
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
+-|. +.++.+|++. -++.+++ -++.+.+|-+.+.++
T Consensus 225 --~~G~---------------N~rm~~iqAA-------------------------igl~QL~--~l~~~~~~R~~~a~~ 260 (374)
T COG0399 225 --ELGY---------------NYRLTEIQAA-------------------------IGLAQLE--RLDEINERRREIAQI 260 (374)
T ss_pred --eccc---------------ccCHHHHHHH-------------------------HHHHHHH--HHHHHHHHHHHHHHH
Confidence 0111 1223333322 3444444 368888888999999
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
..+.|+.+ +.+.+--+....... ......+.+. .++.+.+.+.+++.||. ++.++-|-....+
T Consensus 261 Y~~~l~~~--------~~~~~p~~~~~~~~~~~~~~i~~~~~---~~~R~~l~~~L~~~gi~--~~~~~~P~~~~~~--- 324 (374)
T COG0399 261 YAEALKGL--------PGITLPPEPDGAVHAWHLYTILVDEE---GISRDALMESLKEAGVG--AVVYFRPLHLQPA--- 324 (374)
T ss_pred HHHHhhcC--------CCccccCCCCCceeeeeeeEEEecCC---CCCHHHHHHHHHhCCCC--ceEEeeccccchh---
Confidence 99999987 333221111111111 1222223332 36778888888888888 4444444222211
Q ss_pred hhhhhhhhhcccc-ccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 556 KDNVLEKTDREAK-SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 556 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.++.. ... ...++ ........+++=++..-|.+|++++++.|++++.
T Consensus 325 ----~~~~~-~~~~~~lp~----ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 325 ----YRQLG-YFPEGDLPN----AEDLSERILSLPLHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred ----hhccc-ccccCCCch----HHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhc
Confidence 11100 000 00000 0122345899999999999999999999999874
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=155.83 Aligned_cols=169 Identities=11% Similarity=0.140 Sum_probs=123.0
Q ss_pred HHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|+++++ ++++ ..|++|+|+++|+.+++..+ .++||+|++. ..|+. ....++..|++++.++
T Consensus 73 ~lr~aia~~~~~~~g~~~~~~-~~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~-----~~~~~~~~G~~~~~v~ 145 (399)
T PRK07681 73 EFHEAVTEYYNNTHNVILNAD-KEVLLLMGSQDGLVHLPMVY-ANPGDIILVPDPGYTA-----YETGIQMAGATSYYMP 145 (399)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CeEEECCCcHHHHHHHHHHh-CCCCCEEEECCCCccc-----hHHHHHhcCCEEEEEe
Confidence 67788887775 4541 37999999999999999998 6899997754 34542 2345677899999999
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
.+.. ...++.+++++.+.++ ++++.++..+|+||..++ ++ |+++|+++|+++++|-+..- +....
T Consensus 146 ~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~ 219 (399)
T PRK07681 146 LKKENDFLPDLELIPEEIADK------AKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPI 219 (399)
T ss_pred cCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCC
Confidence 8733 2357899998887643 488999888999999999 55 77889999999999997541 21000
Q ss_pred C-CCCC-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 318 S-FGLS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 318 ~-ldls-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
+ +.+. ..+..+++.|+.|.||. .| +|+++..++.++.+
T Consensus 220 ~~~~~~~~~~~~i~~~S~SK~~~~--~GlRiG~~i~~~~l~~~~ 261 (399)
T PRK07681 220 SFLSVPGAKEVGVEINSLSKSYSL--AGSRIGYMIGNEEIVRAL 261 (399)
T ss_pred ChhhCCCCcccEEEEeecccccCC--ccceeEEEecCHHHHHHH
Confidence 1 1111 12346888999999994 36 79988776665444
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-13 Score=153.17 Aligned_cols=165 Identities=16% Similarity=0.251 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC--------CCCCCCeEEE-eccccchhhHHHHHHHHhcCC
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY--------PFMSVKNLLT-VYDYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl--------~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~ 240 (632)
....+.++++++++|++ .+++|+|+|+|+.+++.++ .+++||+|++ ...|.+ .. ......|+
T Consensus 63 ~~~~~fe~~lA~~~g~~----~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a-~~----~~v~~~G~ 133 (438)
T PRK15407 63 RFNDAFEKKLAEFLGVR----YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPT-TV----NPIIQNGL 133 (438)
T ss_pred hhHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHH-HH----HHHHHcCC
Confidence 34678899999999985 4889999999999988876 5689999765 556764 22 22345799
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCC
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSF 319 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~l 319 (632)
+++.++++..++.+|++++++++++++ +++++.|. +|...+++ |.++|+++|++|++|++|+.|.....-
T Consensus 134 ~pv~vdvd~~~~~id~~~le~~i~~~t------kaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~ 204 (438)
T PRK15407 134 VPVFVDVELPTYNIDASLLEAAVSPKT------KAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGR 204 (438)
T ss_pred EEEEEecCCCcCCcCHHHHHHHcCcCC------eEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCe
Confidence 999999875577889999999987644 88888874 78889999 999999999999999999998632211
Q ss_pred CCCCCCCcEEEEccc--cccCCCCCceEEEEEeCCCcc
Q 006746 320 GLSLVRPDFLICSFY--QIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 320 dls~~~~Df~~~S~h--K~~G~~P~G~G~L~Vr~~~~~ 355 (632)
.+-.++ |+.++||| |.+.. ..| |+|+++++.+.
T Consensus 205 ~~G~~g-d~~~fSf~~~k~~~~-geG-G~l~t~d~~l~ 239 (438)
T PRK15407 205 MTGTFG-DIATLSFYPAHHITM-GEG-GAVFTNDPLLK 239 (438)
T ss_pred eeeccC-ceEEEeCCCCCCccc-cCc-eEEEECCHHHH
Confidence 122344 99999999 43332 225 88888876653
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=150.79 Aligned_cols=202 Identities=12% Similarity=0.109 Sum_probs=134.6
Q ss_pred CceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc---
Q 006746 108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--- 183 (632)
Q Consensus 108 ~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l--- 183 (632)
+.++||.+... ..|..+.+++.+...... .|+. ..-..+.|+.+++++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~--------------------------~Y~~--~~g~~~lr~~ia~~~~~~ 82 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDEEVL--------------------------AYSH--SQGIPELREAFAKYYKKW 82 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhcCCc--------------------------CcCC--CCCCHHHHHHHHHHHHHh
Confidence 46889988876 357777777654321100 0110 011247888888887
Q ss_pred --CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccc--cCHHHH
Q 006746 184 --NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLR--INSEKL 259 (632)
Q Consensus 184 --~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~--i~~~~l 259 (632)
+++++ .|++|+|+|+|+.+++..+ +++||+|++..-+..+. ...++..|++++.++.+..++. .+.++|
T Consensus 83 ~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l 155 (397)
T PRK07568 83 GIDVEPD--EILITNGGSEAILFAMMAI-CDPGDEILVPEPFYANY----NGFATSAGVKIVPVTTKIEEGFHLPSKEEI 155 (397)
T ss_pred CCCCCcc--eEEEcCChHHHHHHHHHHh-cCCCCEEEEecCCCccH----HHHHHHcCCEEEEeecCcccCCCCCCHHHH
Confidence 46655 7999999999999999988 78999977654333322 2345678999999988633332 246888
Q ss_pred HHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCCC-CCCCC-CCCcEE
Q 006746 260 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMDS-FGLSL-VRPDFL 329 (632)
Q Consensus 260 ~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~~-ldls~-~~~Df~ 329 (632)
+++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.+... +....+ +.+.. ..--++
T Consensus 156 ~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~ 229 (397)
T PRK07568 156 EKLITPK------TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVII 229 (397)
T ss_pred HHhcCcc------ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEE
Confidence 8887654 489999999999999997 56 78889999999999997431 210011 22211 112378
Q ss_pred EEccccccCCCCCceEEEEEe
Q 006746 330 ICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 330 ~~S~hK~~G~~P~G~G~L~Vr 350 (632)
+.|+.|.||.+...+|+++..
T Consensus 230 ~~S~SK~~~~~G~R~G~~~~~ 250 (397)
T PRK07568 230 IDSVSKRYSACGARIGCLISK 250 (397)
T ss_pred EecchhhccCCCcceEEEecC
Confidence 889999988432346776654
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-14 Score=152.90 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=124.6
Q ss_pred HHHHHHHHHcC-CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 174 AMKKRIMDFLN-ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 174 ~~R~~ia~~l~-a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
+.|+.|+++++ ++++ .|++|+|+++|+.+++.++ ..+||+|++.. .|. .+...++..|++++.++.+..+
T Consensus 66 ~lr~~ia~~~~~~~~~--~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~-----~~~~~~~~~g~~v~~v~~~~~~ 137 (373)
T PRK07324 66 EFKEAVASLYQNVKPE--NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQ-----QLYDIPESLGAEVDYWQLKEEN 137 (373)
T ss_pred HHHHHHHHHhcCCChh--hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCch-----hHHHHHHHcCCEEEEEeccccc
Confidence 78999999885 5655 7999999999999999998 78999987643 232 2345667899999999987433
Q ss_pred -cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC-CCCCCCCCC-CCC
Q 006746 252 -LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG-PKDMDSFGL-SLV 324 (632)
Q Consensus 252 -~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~-g~~m~~ldl-s~~ 324 (632)
..++.++|++++.++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.+... ..+-....+ +..
T Consensus 138 ~~~~d~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~ 211 (373)
T PRK07324 138 GWLPDLDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLY 211 (373)
T ss_pred CCCCCHHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhcc
Confidence 347899998877654 489999999999999999 77 88999999999999987432 110001111 112
Q ss_pred CCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 325 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+-.+++.|+-|.||.+.-.+|.++..++.++.+
T Consensus 212 ~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~ 244 (373)
T PRK07324 212 EKGISTNSMSKTYSLPGIRVGWIAANEEVIDIL 244 (373)
T ss_pred CCEEEEecchhhcCCccceeEEEecCHHHHHHH
Confidence 224778899999995212358888766655444
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-14 Score=152.64 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=123.2
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++.......+.+++++++.|++. . ++++|++.++.++.. + +++||+|++. ..|.+ ....+.+.+++.|+++
T Consensus 44 y~r~~~p~~~~Le~~lA~l~g~~~---~-~~~~sG~aai~~~~~-~-l~~Gd~Viv~~~~y~~-~~~~~~~~~~~~G~~v 116 (377)
T PRK07671 44 YSRTGNPTRAALEELIAVLEGGHA---G-FAFGSGMAAITAVMM-L-FSSGDHVILTDDVYGG-TYRVMTKVLNRFGIEH 116 (377)
T ss_pred cCCCCChHHHHHHHHHHHHhCCCc---e-EEeCCHHHHHHHHHH-H-hCCCCEEEECCCccch-HHHHHHHHHhcCCeEE
Confidence 333344566789999999999852 3 456777888887764 3 5789997754 45554 3334455667789999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++. .+.++++++|+++ ++++.+...+|+||...|++ |.++|+++|+++++|.++..+....++
T Consensus 117 ~~v~~------~d~~~l~~ai~~~------tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~-- 182 (377)
T PRK07671 117 TFVDT------SNLEEVEEAIRPN------TKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPI-- 182 (377)
T ss_pred EEECC------CCHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCChh--
Confidence 88864 3778999988765 48999999999999999999 999999999999999997665421233
Q ss_pred CCCCCcEEEEccccccCCCCCc-e-EEEEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG-F-GCLFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G-~-G~L~Vr~ 351 (632)
.+++|+++.|++|++|. |.+ + |++++++
T Consensus 183 -~~g~Divv~S~sK~l~G-~~~~~~G~~v~~~ 212 (377)
T PRK07671 183 -SLGADIVLHSATKYLGG-HSDVVAGLVVVNS 212 (377)
T ss_pred -hhCCeEEEecCcccccC-CccceeEEEEeCc
Confidence 35789999999998875 543 3 4555544
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=154.36 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=124.2
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+.......+..+++++++.|+.. . ++++|++.|+.++.. + +++||+|++. ..|++ ....+...+++.|+++
T Consensus 44 y~r~~~p~~~~Le~~la~l~g~~~---a-l~~~SG~~Al~~~l~-~-l~pGd~Vi~~~~~y~~-t~~~~~~~~~~~gi~v 116 (380)
T PRK06176 44 YSRSGNPTRFALEELIADLEGGVK---G-FAFASGLAGIHAVFS-L-FQSGDHVLLGDDVYGG-TFRLFDKVLVKNGLSC 116 (380)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCC---E-EEECCHHHHHHHHHH-H-cCCCCEEEEcCCChhH-HHHHHHHHHHhcCeEE
Confidence 343334556788999999999752 4 555777889998775 3 5899998764 45654 4445556678889998
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++. .++++++++++++ ++++.+...+|+||...|++ |+++||++|+++++|.++..+....++
T Consensus 117 ~~vd~------~d~e~l~~ai~~~------t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~-- 182 (380)
T PRK06176 117 TIIDT------SDLSQIKKAIKPN------TKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPL-- 182 (380)
T ss_pred EEcCC------CCHHHHHHhcCcC------ceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCcc--
Confidence 88764 3688898888764 48999999999999999999 999999999999999998776421243
Q ss_pred CCCCCcEEEEccccccCCCCCc-eEE-EEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG-FGC-LFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G-~G~-L~Vr~ 351 (632)
.+++|++++|++|++|. |.. +|. ++.++
T Consensus 183 -~~gaDivv~S~tK~l~g-~~d~~gG~vv~~~ 212 (380)
T PRK06176 183 -LLGADIVVHSGTKYLGG-HSDVVAGLVTTNN 212 (380)
T ss_pred -ccCCCEEEecCceeccC-CccceeeEEEecH
Confidence 46899999999998874 432 444 44443
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=157.21 Aligned_cols=172 Identities=14% Similarity=0.107 Sum_probs=127.0
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHH-HHhcCCE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRT-SEKRGAR 241 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~-a~~~G~~ 241 (632)
|++......++.++++++++|+. .+++|+|+++|+.+++.++ +++||+|++.. .|.. ....+... .+..|++
T Consensus 70 Y~r~~~Pt~~~LE~~lA~l~g~~----~~l~~~sG~~Ai~~al~al-~~~GD~Vl~~~~~Y~~-~~~~~~~~~~~~~G~~ 143 (418)
T PLN02242 70 YSRHFNPTVLNLGRQMAALEGTE----AAYCTASGMSAISSVLLQL-CSSGGHVVASNTLYGG-THALLAHFLPRKCNIT 143 (418)
T ss_pred ccCCCChhHHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEcCCcHHH-HHHHHHHhhhhccCce
Confidence 44444456678999999999985 3568899999999999998 78999987654 3322 22222222 2347888
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
++.++. .++++++++|+++ +++++.+.+.+|+||...|++ |+++||++|+++++|.++. +. .++
T Consensus 144 ~~~~d~------~d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~-~~---~~~ 208 (418)
T PLN02242 144 TTFVDI------TDLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFA-PM---VLS 208 (418)
T ss_pred EEEcCC------CCHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCC-cc---CCC
Confidence 877654 2788999888653 258999999999999999999 9999999999999999875 33 223
Q ss_pred CCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
...++.|+++.|+.|.+|. +.. .|+++.+++.++.+
T Consensus 209 ~~~~g~divv~S~SK~l~g-~g~~~gG~iv~~~~li~~l 246 (418)
T PLN02242 209 PARLGADVVVHSISKFISG-GADIIAGAVCGPAELVNSM 246 (418)
T ss_pred HHHcCCcEEEEeCccccCC-CCCceEEEEEcCHHHHHHH
Confidence 3345789999999998873 322 47777666655444
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-14 Score=153.34 Aligned_cols=162 Identities=13% Similarity=0.041 Sum_probs=123.1
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
|++......++..++++++.|+. ..+.+++++.|+.+++.++ +++||+|+++..+.+....++...+.+.|++++
T Consensus 58 Y~r~~~P~~~~lE~~la~leg~~----~av~~sSG~aAi~~al~al-l~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~ 132 (384)
T PRK06434 58 YTRWGNPTVQAFEEKYAVLENAE----HALSFSSGMGAITSAILSL-IKKGKRILSISDLYGQTFYFFNKVLKTLGIHVD 132 (384)
T ss_pred eeCCCChhHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHH-hCCCCEEEEecCccchHHHHHHHHHHhcCcEEE
Confidence 45445566678888899999985 3567778889999999998 899999887665555567777677888999999
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS 322 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls 322 (632)
+++++.. ..++ ++. .+++++.+.+.+|+|+...|++ |+++||++| ++||+++..|..-.+++
T Consensus 133 fvd~~~~-~~~~-------l~~-----~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~-- 195 (384)
T PRK06434 133 YIDTDRL-NSLD-------FDP-----SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPLD-- 195 (384)
T ss_pred EECCCCh-hhee-------ecC-----CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCchh--
Confidence 9987621 1121 222 1368999999999999999999 999999998 57799987665323565
Q ss_pred CCCCcEEEEccccccCCCCCc-eEEEEE
Q 006746 323 LVRPDFLICSFYQIFGENPSG-FGCLFV 349 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G-~G~L~V 349 (632)
+++|++++|.+|+++. +.+ +|.+++
T Consensus 196 -~gaDivv~S~tK~i~G-~~d~~gG~vv 221 (384)
T PRK06434 196 -LGADVVIHSATKYISG-HSDVVMGVAG 221 (384)
T ss_pred -cCCCEEEeecccccCC-CCCceEEEEe
Confidence 5899999999997764 543 344444
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-14 Score=152.98 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=123.0
Q ss_pred HHHHHHHHHHcC----CCCC-CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEe
Q 006746 173 SAMKKRIMDFLN----ISEN-DYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 173 ~~~R~~ia~~l~----a~~~-ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+.|+.++++++ .... +..|++|+|+|+|+.+++.++ +.+||+|++.. .|.. . ...++..|+++..++
T Consensus 70 ~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~-~----~~~~~~~g~~~~~~~ 143 (391)
T PRK07309 70 LELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAI-LEPGDKVLLPAPAYPG-Y----EPIVNLVGAEIVEID 143 (391)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcc-h----HHHHHHcCCEEEEEe
Confidence 356667777663 3211 237999999999999999998 68999977543 4432 1 334567899999998
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMDS 318 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~~ 318 (632)
.+..+..++.+++++++.+.. .+++++.+++.+|+||..++ ++ |+++|+++|+++++|.+... +. ..
T Consensus 144 ~~~~~~~~d~~~l~~~~~~~~---~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~--~~ 218 (391)
T PRK07309 144 TTENDFVLTPEMLEKAILEQG---DKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE--PH 218 (391)
T ss_pred cCCcCCcCCHHHHHHHhhccC---CCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC--CC
Confidence 864345689999999886421 24689999988999999998 56 77888999999999998542 21 11
Q ss_pred CCCCCCCC--cEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 319 FGLSLVRP--DFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 319 ldls~~~~--Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.++..... -+++.|+.|.||.+-..+|+++..++.++.+
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~ 259 (391)
T PRK07309 219 VSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQL 259 (391)
T ss_pred CCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHH
Confidence 22221222 3889999999995322378888877765443
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-14 Score=152.21 Aligned_cols=170 Identities=12% Similarity=0.201 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
..+.|+.++++++++++ .|++|+|+++++.++...+ +++||+|++.. .+.. . ...++..|++++.++.+ +
T Consensus 59 ~~~lr~~ia~~~~~~~~--~I~~~~G~~~~l~~~~~~~-~~~gd~Vli~~p~y~~--~---~~~~~~~g~~~~~v~~~-~ 129 (352)
T PRK03321 59 AVELRAALAEHLGVPPE--HVAVGCGSVALCQQLVQAT-AGPGDEVIFAWRSFEA--Y---PILVQVAGATPVQVPLT-P 129 (352)
T ss_pred HHHHHHHHHHHhCcCHH--HEEECCCHHHHHHHHHHHh-cCCCCEEEeCCCCHHH--H---HHHHHHcCCEEEEccCC-C
Confidence 35899999999998865 7999999999999999887 78999987642 2321 2 22456789999999987 4
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEeccccC----CCCCCCCCCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACALG----PKDMDSFGLSL 323 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~----g~~m~~ldls~ 323 (632)
++.++++++++.++++ ++++.+++.+|+||..+|.+ |.++|+. +|+++++|.+... +.....+..-.
T Consensus 130 ~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 203 (352)
T PRK03321 130 DHTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVR 203 (352)
T ss_pred CCCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHh
Confidence 5678999999988654 48999999999999999999 9999887 5899999997532 11001111111
Q ss_pred CCCc-EEEEccccccCCCCCc--eEEEEEeCCCccccC
Q 006746 324 VRPD-FLICSFYQIFGENPSG--FGCLFVKKSTVPILV 358 (632)
Q Consensus 324 ~~~D-f~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~ 358 (632)
...+ +++.|+-|.||. .| +|+++.+++.++.+.
T Consensus 204 ~~~~vi~~~S~SK~~g~--~GlRiG~~v~~~~~~~~~~ 239 (352)
T PRK03321 204 DHPNVVVLRTFSKAYGL--AGLRVGYAVGHPEVIAALR 239 (352)
T ss_pred hCCCEEEEecchHHhhh--HHHhhhhhcCCHHHHHHHH
Confidence 1223 566688899994 36 799988777665543
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.7e-14 Score=150.94 Aligned_cols=208 Identities=12% Similarity=0.070 Sum_probs=140.3
Q ss_pred CCceEeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc--
Q 006746 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-- 183 (632)
Q Consensus 107 ~~~vyLD~ag~gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l-- 183 (632)
.+.++|+.+...+ .+..+.+++.+.+... . ..|+.. .-..+.|+.|++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~---------------------~~Y~~~--~g~~~lr~~ia~~~~~ 82 (388)
T PRK07337 30 RDIIHMGIGEPDFTAPEPVVEAAARALRRG----V---------------------TQYTSA--LGLAPLREAIAAWYAR 82 (388)
T ss_pred CCEEEeCCcCCCCCCCHHHHHHHHHHHhcC----C---------------------CCCCCC--CCCHHHHHHHHHHHHH
Confidence 4578999887764 4566677665433210 0 001100 01236777777776
Q ss_pred --C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC-CccccCHH
Q 006746 184 --N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW-PRLRINSE 257 (632)
Q Consensus 184 --~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~-~~~~i~~~ 257 (632)
| ++++ .|++|+|+++|+.+++..+ .++||+|++. ..|++ . ...++..|++++.++.+. .+..++.+
T Consensus 83 ~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~-~----~~~~~~~g~~~~~~~~~~~~~~~~~~~ 154 (388)
T PRK07337 83 RFGLDVAPE--RIVVTAGASAALLLACLAL-VERGDEVLMPDPSYPC-N----RHFVAAAEGRPVLVPSGPAERFQLTAA 154 (388)
T ss_pred HhCCCCChH--hEEEecCcHHHHHHHHHHh-cCCCCEEEEeCCCchh-h----HHHHHHcCCEEEEeecCCccCCcCCHH
Confidence 4 3554 7999999999999999998 6899997654 46654 2 233456799999999863 24578999
Q ss_pred HHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEecccc-CCCCCCCCCCCCCCCcE-EEE
Q 006746 258 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACAL-GPKDMDSFGLSLVRPDF-LIC 331 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~-~g~~m~~ldls~~~~Df-~~~ 331 (632)
++++.+.++ ++++++++.+|+||..++. + |+++|+++|+++++|-+-. ...+-.......+..+. ++.
T Consensus 155 ~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~ 228 (388)
T PRK07337 155 DVEAAWGER------TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITIN 228 (388)
T ss_pred HHHhhcCcc------ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEE
Confidence 999888754 3788999999999999984 5 7788999999999997522 22110111222234454 467
Q ss_pred ccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 332 SFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 332 S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
|+.|.||. .| +|++++.++.++.+
T Consensus 229 S~SK~~~~--~G~RiG~~~~~~~l~~~l 254 (388)
T PRK07337 229 SFSKYFNM--TGWRLGWLVVPEALVGTF 254 (388)
T ss_pred echhhcCC--chhheeeeecCHHHHHHH
Confidence 99999984 36 79999876655444
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-14 Score=151.74 Aligned_cols=170 Identities=12% Similarity=0.085 Sum_probs=122.2
Q ss_pred HHHHHHHHHHc----CC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL----NI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l----~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|++++ |. +++ ..|++|+|+++|+.+++..+ .++||+|++. ..|+. ....++..|++++.+
T Consensus 72 ~~lr~aia~~~~~~~g~~~~~~-~~ii~t~G~~~~i~~~~~~~-~~~gd~Vl~~~P~y~~-----~~~~~~~~g~~~~~v 144 (385)
T PRK09276 72 LEFRKAVADWYKRRFGVELDPE-TEVISLIGSKEGIAHIPLAF-VNPGDVVLVPDPGYPV-----YKIGTIFAGGEPYFM 144 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-CcEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcC-----hHHHHHHcCCEEEEE
Confidence 35677777776 44 333 25899999999999999998 6899997754 34442 233466789999999
Q ss_pred eccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC----CCCC
Q 006746 246 EFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG----PKDM 316 (632)
Q Consensus 246 ~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~----g~~m 316 (632)
+.+.. ...++++++++.+.++ ++++.++..+|+||..+|. + |+++|+++|+++++|-+... +...
T Consensus 145 ~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 218 (385)
T PRK09276 145 PLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKP 218 (385)
T ss_pred ecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCC
Confidence 98643 3447888988877643 4889999889999999996 5 78889999999999998542 2110
Q ss_pred CCC-CCCC-CCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 317 DSF-GLSL-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 317 ~~l-dls~-~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
.++ .+.. .+..+++.|+-|.|| ..| +|+++..++.++.+
T Consensus 219 ~~~~~~~~~~~~~i~~~S~SK~~g--~~GlRiG~~i~~~~l~~~~ 261 (385)
T PRK09276 219 PSFLEVPGAKDVGIEFHSLSKTYN--MTGWRIGFAVGNADLIAGL 261 (385)
T ss_pred CChhccCCCcCCEEEEecchhhcC--CcchhheeeeCCHHHHHHH
Confidence 111 1111 234588899999999 447 89998776665444
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-14 Score=151.08 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=118.4
Q ss_pred HHHHHHHHHc----CCCCCCc-cEEEeCCHHHHHHHHHhhCCCCCC---CeEEEe-ccccchhhHHHHHHHHhcCCEEEE
Q 006746 174 AMKKRIMDFL----NISENDY-GMVFTANRTSAFKLLAESYPFMSV---KNLLTV-YDYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey-~vvft~naT~al~lv~~sl~~~~g---d~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
+.|+.|++++ |.+-+.. .|++|+|+++|+.++...+ ..+| |+|++. ..|+. ....++..|++++.
T Consensus 40 ~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~-----~~~~~~~~g~~~~~ 113 (350)
T TIGR03537 40 ALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPV-----YERGALFAGGEPTA 113 (350)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcc-----hHHHHHhcCCEEEE
Confidence 5666666665 6433332 6999999999999999988 4565 577654 34542 23446778999999
Q ss_pred EeccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC---CCCC
Q 006746 245 AEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG---PKDM 316 (632)
Q Consensus 245 v~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~---g~~m 316 (632)
++.+. ....++++++++++.++ ++++.++..+|+||..+| ++ |+++|+++|+++++|.+..- +..
T Consensus 114 v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~- 186 (350)
T TIGR03537 114 VKLKKEDGFLLRLEKVEKSILEE------TKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP- 186 (350)
T ss_pred cccCcccCCccCHHHHHHhhhhc------cEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-
Confidence 99862 23457999999988764 489999999999999999 77 88889999999999998532 221
Q ss_pred CCCCCCCCC--CcEEEEccccccCCCCCc--eEEEEEeCCCcc
Q 006746 317 DSFGLSLVR--PDFLICSFYQIFGENPSG--FGCLFVKKSTVP 355 (632)
Q Consensus 317 ~~ldls~~~--~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~ 355 (632)
...+..+. -.+++.|+.|.+|. .| +|+++..+..++
T Consensus 187 -~~~~~~~~~~~~i~~~s~SK~~g~--~GlRiG~~~~~~~~~~ 226 (350)
T TIGR03537 187 -PHSALEVGIENVLAFHSLSKRSGM--TGYRSGFVAGDEKLIS 226 (350)
T ss_pred -CCchhhcCcCCEEEEeecccccCC--ccccceeeecCHHHHH
Confidence 11121122 24788899999984 36 787765554443
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-14 Score=154.26 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=127.4
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+......+++.++++++++|++ .+++++|+|+|+.+++.++ +++||+|++. ..|.. ....+...++..|+++
T Consensus 59 Y~r~~~pt~~~Le~~lA~l~g~~----~~l~~~sgt~Ai~~~l~al-~~~GD~Vl~~~~~y~~-~~~~~~~~~~~~Gi~v 132 (394)
T PRK07050 59 YGLHATPTSLALAQRLAEIEGGR----HALLQPSGLAAISLVYFGL-VKAGDDVLIPDNAYGP-NRDHGEWLARDFGITV 132 (394)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCC----eEEEeccHHHHHHHHHHHH-hCCCCEEEEecCCccc-HHHHHHHHHHhcCeEE
Confidence 33333345578999999999974 5899999999999999999 8999998754 45554 3333344567889999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++.. +.++++++|+++ ++++.+...+|++|...|++ |+++|+++|+.+++|+++..|....+++
T Consensus 133 ~~vd~~------~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~- 199 (394)
T PRK07050 133 RFYDPL------IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFE- 199 (394)
T ss_pred EEECCC------CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHH-
Confidence 887642 346788887654 48999999999999999999 9999999999999999998876323444
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~ 351 (632)
++.|+++.|+.|+++. ..+ .|++++++
T Consensus 200 --~GaDi~v~S~tK~~~g-~~~~~gG~v~~~~ 228 (394)
T PRK07050 200 --HGVDISVQALTKYQSG-GSDVLMGATITAD 228 (394)
T ss_pred --cCCeEEEEECCceecC-CCCeeEEEEEECC
Confidence 4789999999997763 333 45555543
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-13 Score=159.24 Aligned_cols=176 Identities=13% Similarity=0.102 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHH----HHHhhCCCCCC----CeEEEe-ccccchhhHHHHHHHHhcC
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFK----LLAESYPFMSV----KNLLTV-YDYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~----lv~~sl~~~~g----d~ilt~-~d~~s~~v~~~~~~a~~~G 239 (632)
.+++.+..+.+++++|.+. +-+-+|+++.=+ ++++.+.-..| ++++++ .-|.+| + ..++..|
T Consensus 529 lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn--P---asa~~~G 599 (939)
T TIGR00461 529 QELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN--P---ASAAMAG 599 (939)
T ss_pred HHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC--H---HHHHHCC
Confidence 5788999999999999982 333344443222 24455421112 235544 456543 2 2366789
Q ss_pred CEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc-hH-HHHHHhhCCcEEEEeccccCCCCCC
Q 006746 240 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP-YL-WMRIAQENDWHILIDACALGPKDMD 317 (632)
Q Consensus 240 ~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p-l~-i~~~a~~~g~~vlvDaaq~~g~~m~ 317 (632)
++|+.++.+ ++|.+|+++|+++|++. ..++++|++++.|+ +|...| ++ |+++||++|..++||+||..+.- .
T Consensus 600 ~~Vv~V~~d-~~G~iDle~L~~~i~~~---~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~-~ 673 (939)
T TIGR00461 600 MQVVPVNCD-QDGNIDLVDLKNKAEQH---GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQV-G 673 (939)
T ss_pred CEEEEeccC-CCCCcCHHHHHHHHhhc---CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCC-C
Confidence 999999997 78999999999999852 12479999999999 688877 99 99999999999999999977541 2
Q ss_pred CCCCCCCCCcEEEEccccccCC----CCCceEEEEEeCCCccccCCCCCC
Q 006746 318 SFGLSLVRPDFLICSFYQIFGE----NPSGFGCLFVKKSTVPILVDNTSS 363 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~----~P~G~G~L~Vr~~~~~~L~~~~~g 363 (632)
..+..++++||+++|.||.||. .|+|+|+++||+. |.+...|
T Consensus 674 l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~----L~~~lPg 719 (939)
T TIGR00461 674 LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH----LIPFLPK 719 (939)
T ss_pred CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh----chhhcCC
Confidence 3344678999999999994441 1557799999976 4444444
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-13 Score=146.47 Aligned_cols=290 Identities=9% Similarity=0.064 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--------CCCC-CeEE-EeccccchhhHHHHHHH----
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--------FMSV-KNLL-TVYDYESEAVEAMIRTS---- 235 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--------~~~g-d~il-t~~d~~s~~v~~~~~~a---- 235 (632)
+...+..++++++++.+ .++|++++|+|+..++.... ..+| ++|+ ....+|......+ ...
T Consensus 83 ~~~~~l~~~l~~~~~~~----~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~-~~~~~~~ 157 (401)
T PRK00854 83 DQLAPLYEELAALTGSH----KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIV-GFSTDPD 157 (401)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHH-hccCCcc
Confidence 45567888899998753 58999999999998887652 1234 4554 5567776332221 110
Q ss_pred -----HhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEE
Q 006746 236 -----EKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHIL 305 (632)
Q Consensus 236 -----~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vl 305 (632)
...+..+..++. .|.++|++.|.++ ++++++.++.+.+|.++| ++ +.++|+++|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~------~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI 225 (401)
T PRK00854 158 ARGGFGPFTPGFRVVPF------GDAEALEAAITPN------TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLI 225 (401)
T ss_pred ccccCCCCCCCeEEeCC------CCHHHHHHHhCCC------eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 001123333332 3678999888654 489999999999999998 88 9999999999999
Q ss_pred Eecccc-CCCCCCC---CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccccccc
Q 006746 306 IDACAL-GPKDMDS---FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEF 381 (632)
Q Consensus 306 vDaaq~-~g~~m~~---ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~ 381 (632)
+|.++. +|.. .. .+.....+|+++++ |.++..-.-+|++..+++.++.+.+...+.+ |
T Consensus 226 ~DEv~~g~g~~-g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t----------~----- 287 (401)
T PRK00854 226 LDEIQTGLGRT-GKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLGVLKPGQHGST----------F----- 287 (401)
T ss_pred EechhhCCCCC-chHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHhcccCCCCCCC----------C-----
Confidence 999987 4431 10 11223468999987 9665211127888888877665543111100 0
Q ss_pred CCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh
Q 006746 382 SSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL 461 (632)
Q Consensus 382 ~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~ 461 (632)
.+ + + ....+. .++|+.+.+.
T Consensus 288 ------------------~~-~----~-------------~~~aa~------------------------~a~L~~l~~~ 307 (401)
T PRK00854 288 ------------------GG-N----P-------------LACAVA------------------------RAALKVLTEE 307 (401)
T ss_pred ------------------Cc-C----H-------------HHHHHH------------------------HHHHHHHHHc
Confidence 00 0 0 001111 2667766543
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccC
Q 006746 462 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG 541 (632)
Q Consensus 462 Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G 541 (632)
.+.++.+.+.+++.+.|.++. .+.+ +. ....|.++.|.+.+.. .....+.+.+.++||.++.
T Consensus 308 ---~~~~~~~~~~~~l~~~L~~~~------~~~~---~~--~~g~g~~~~i~~~~~~---~~~~~~~~~L~~~GV~v~~- 369 (401)
T PRK00854 308 ---GMIENAAEMGAYFLEGLRSIR------SNIV---RE--VRGRGLMLAVELEPEA---GGARQYCEALKERGLLAKD- 369 (401)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhc------cCce---EE--EeccceEEEEEEecCc---hhHHHHHHHHHHCCeEEec-
Confidence 356888889999999998872 2211 11 1235777777664321 2334455544456888741
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+.+.||+++++.++.+||+++++.|++++.
T Consensus 370 ---------------------------------------~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 370 ---------------------------------------THDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred ---------------------------------------CCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 1235999999999999999999999998864
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-14 Score=153.38 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..++...++++++.|+. ..+.++|+++|+.++..++ +++||+|+++. .|.+ ....+....++.|+++.++.+
T Consensus 61 Ptv~~lE~~la~leg~~----~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~-T~~~~~~~l~~~Gi~v~~vd~- 133 (432)
T PRK06702 61 PTLAAFEQKLAELEGGV----GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGG-TFNLFGVSLRKLGIDVTFFNP- 133 (432)
T ss_pred cHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHH-HHHHHHHHHHHCCCEEEEECC-
Confidence 44668899999999985 3677999999999999988 79999987654 5543 333334445789999998854
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
.+|+++++++|+++| ++|.+.+.+|+++...|++ |+++|+++|+.+++|.+-..|.-..++ +.++|
T Consensus 134 ----~~d~~~l~~~I~~~T------k~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl---~~GAD 200 (432)
T PRK06702 134 ----NLTADEIVALANDKT------KLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAF---EHGAN 200 (432)
T ss_pred ----CCCHHHHHHhCCcCC------eEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhhCChh---hcCCC
Confidence 268889999998765 8888999999999999999 999999999999999986555311233 45899
Q ss_pred EEEEccccccCCCCCceEEEEEe
Q 006746 328 FLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
+++-|.-|++|.+..++|.+.+.
T Consensus 201 Ivv~S~TKy~~Ghsd~l~G~v~~ 223 (432)
T PRK06702 201 IIVHSTTKYIDGHASSLGGIVID 223 (432)
T ss_pred EEEEccccccCCCcceeceEEEe
Confidence 99999999776556777877774
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-13 Score=148.57 Aligned_cols=173 Identities=11% Similarity=0.080 Sum_probs=117.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccC-C
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSW-P 250 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~-~ 250 (632)
+.+.+.+.+..|...+...|++|+|+++|+.+++.++ .++||+|++.. .|.. . ...++..|++++.++.+. .
T Consensus 74 ~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~-~----~~~~~~~g~~~~~v~~~~~~ 147 (386)
T PRK07550 74 EAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFN-H----KMWLDMLGIRPVYLPCDEGP 147 (386)
T ss_pred HHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcc-h----HHHHHhcCCEEEEEecCCCc
Confidence 3344444444343322237999999999999999998 68999987653 3332 1 234567899999999863 3
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCC-C-CCCCCC-CC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPK-D-MDSFGL-SL 323 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~-~-m~~ldl-s~ 323 (632)
+..++.++++++++++ ++++++.+.+|+||..+| ++ |+++|+++|+++++|.+...-. + -.+..+ +.
T Consensus 148 ~~~~~~~~l~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~ 221 (386)
T PRK07550 148 GLLPDPAAAEALITPR------TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFAD 221 (386)
T ss_pred CCCCCHHHHHHHhccc------CcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhC
Confidence 4557899999988754 377778888999999998 55 7888999999999999743100 0 001111 11
Q ss_pred ---CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 324 ---VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 324 ---~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
..-.+++.|+.|.+|.+-..+|+++..++.++.+
T Consensus 222 ~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~ 258 (386)
T PRK07550 222 PDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEI 258 (386)
T ss_pred CCccccEEEEecchhhccCcccceEeeecCHHHHHHH
Confidence 1124779999998884223488888876655443
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-14 Score=151.92 Aligned_cols=172 Identities=13% Similarity=0.151 Sum_probs=121.6
Q ss_pred HHHHHHHHHc----CC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----NI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ |. +++ ..|++|+|+++|+.+++..+ +++||+|++. ..|+. . ...++..|++++.++
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~-~~i~vt~G~~~al~~~~~~~-~~~gd~Vlv~~P~y~~-~----~~~~~~~g~~~~~v~ 149 (394)
T PRK05942 77 SFRQAITDWYHRRYGVELDPD-SEALPLLGSKEGLTHLALAY-VNPGDVVLVPSPAYPA-H----FRGPLIAGAQIYPII 149 (394)
T ss_pred HHHHHHHHHHHHHHCCCcCCC-CeEEEccChHHHHHHHHHHh-CCCCCEEEEcCCCCcc-h----HHHHHHcCCEEEEee
Confidence 5677777776 53 343 24888999999999999998 7899997654 45553 2 223456899999999
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
.+.. +..++.+++++.+.++ ++++.++..+|+||..+| ++ |+++|+++|+++++|.+..- +....
T Consensus 150 ~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~ 223 (394)
T PRK05942 150 LKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPT 223 (394)
T ss_pred cCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCC
Confidence 8632 3358999999888654 489999889999999999 55 77889999999999997321 11001
Q ss_pred C-CCCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 318 S-FGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 318 ~-ldls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
+ .++.. ....+++.||-|.||.+.-.+|+++..++.++.+.
T Consensus 224 ~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~ 266 (394)
T PRK05942 224 SLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLR 266 (394)
T ss_pred ChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHH
Confidence 1 11111 12357788999999853233899988776655443
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.9e-14 Score=151.96 Aligned_cols=168 Identities=11% Similarity=0.046 Sum_probs=125.6
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++......+..+++|+.+-+.. ..++++++++|+..++.++ +++||+|+.. ..|++ ....+.+.+++.|++|
T Consensus 58 YsR~gnPt~~~Le~~la~le~~~----~~v~~sSG~aAi~~~l~al-l~~GD~Vlv~~~~Y~~-~~~l~~~~l~~~Gi~v 131 (395)
T PRK05967 58 YGTRGTPTTDALCKAIDALEGSA----GTILVPSGLAAVTVPFLGF-LSPGDHALIVDSVYYP-TRHFCDTMLKRLGVEV 131 (395)
T ss_pred cCCCCChHHHHHHHHHHHHhCCC----CEEEECcHHHHHHHHHHHh-cCCCCEEEEccCCcHH-HHHHHHHHHHhcCeEE
Confidence 44333455567888888776653 2456667999999999998 8999997754 45554 3334456778899999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
..++.+ +.++++++|+++ ++||.+...+|+++.+.|++ |+++||++|++++||.++..|....+++
T Consensus 132 ~~vd~~------~~e~l~~al~~~------TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~- 198 (395)
T PRK05967 132 EYYDPE------IGAGIAKLMRPN------TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLD- 198 (395)
T ss_pred EEeCCC------CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhH-
Confidence 998643 246788888765 48999999999999999999 9999999999999999988875334555
Q ss_pred CCCCCcEEEEccccccCCCCCc-eEEEEEeCC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG-FGCLFVKKS 352 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G-~G~L~Vr~~ 352 (632)
+++|+++.|..|+++.+..- .|++..+++
T Consensus 199 --~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~ 228 (395)
T PRK05967 199 --FGVDISIHAATKYPSGHSDILLGTVSANEK 228 (395)
T ss_pred --cCCCEEEEecccccCCCCCeeEEEEEcCHH
Confidence 69999999999977621111 565544443
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-13 Score=148.08 Aligned_cols=288 Identities=15% Similarity=0.143 Sum_probs=182.0
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHHHHh---------cCCE
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRTSEK---------RGAR 241 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~a~~---------~G~~ 241 (632)
.+..++++++++.+. ...|+||+++++|+..++..... +|+ +++. ...||......+ ..... .+.+
T Consensus 88 ~~la~~l~~~~~~~~-~~~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (398)
T PRK03244 88 IALAERLVELLGAPE-GGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGAL-ALTGQPAKRAPFEPLPGG 164 (398)
T ss_pred HHHHHHHHHhCCCCC-CCEEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHH-hccCCcccccCCCCCCCC
Confidence 578888899988542 12799999999999999886533 453 4553 346775322222 11100 0112
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
+..+|. .+.+++++.+.+ ++++|.+..+.|.+|...| ++ +.++|+++|+++++|-++.. |..
T Consensus 165 ~~~~~~------~d~~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~ 232 (398)
T PRK03244 165 VEHVPY------GDVDALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRT 232 (398)
T ss_pred ceEeCC------CCHHHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccc
Confidence 222222 267888887753 3588888989999999998 88 99999999999999998753 211
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
+..+......||++++ -|.+|. .-.+|+++++++.++.+.+...+. .|
T Consensus 233 g~~~~~~~~~~~pDi~t~--sK~l~~-G~~ig~~~~~~~~~~~~~~~~~~~----------t~----------------- 282 (398)
T PRK03244 233 GAWFAHQHDGVTPDVVTL--AKGLGG-GLPIGACLAFGPAADLLTPGLHGS----------TF----------------- 282 (398)
T ss_pred chHHhhhhhCCCCCEEEE--chhhhC-CcccEEEEEcHHHHhhccCCCCcC----------CC-----------------
Confidence 1122334457897755 598772 345899999888765553211100 00
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.+ .++ ...+. .+.|+.+.+ +.+.+|++.+
T Consensus 283 ------~~-----~~~-------------~~aaa------------------------~a~l~~~~~---~~~~~~~~~~ 311 (398)
T PRK03244 283 ------GG-----NPV-------------ACAAA------------------------LAVLDTIAS---EGLLENAERL 311 (398)
T ss_pred ------CC-----CHH-------------HHHHH------------------------HHHHHHHHh---ccHHHHHHHH
Confidence 00 000 00111 145554433 4567899999
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
.++|++.|.++.| |.+. . . ..+|.++.+.+... ....+.+.+.++||.++..
T Consensus 312 ~~~l~~~L~~~~~------~~~~---~-v-~g~g~~~~i~~~~~-----~~~~~~~~l~~~Gv~~~~~------------ 363 (398)
T PRK03244 312 GEQLRAGIEALGH------PLVD---H-V-RGRGLLLGIVLTAP-----VAKAVEAAAREAGFLVNAV------------ 363 (398)
T ss_pred HHHHHHHHHhcCC------Ccee---e-E-eeccEEEEEEEecc-----HHHHHHHHHHHCCeEEeec------------
Confidence 9999999998844 3221 1 0 12566777766431 2344555555679888631
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+..+||+|+++..|.+||+++++.|++.+..
T Consensus 364 ----------------------------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 364 ----------------------------APDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred ----------------------------CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 2258999999999999999999999988753
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-13 Score=145.05 Aligned_cols=215 Identities=11% Similarity=0.149 Sum_probs=141.3
Q ss_pred CCceEeecCCCCC--CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcC
Q 006746 107 SNHTCLDYFGIGL--FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN 184 (632)
Q Consensus 107 ~~~vyLD~ag~gl--~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~ 184 (632)
++.++|+++...+ .|+.+.+++.+.+.... .+ .| ..+. | ..++.+.+.+.+++++|
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~-----------~~--~Y--~~~~-----G--~~~LR~aia~~l~~~~g 96 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGG-----------VQ--AY--TEYR-----G--DADIRELLAARLAAFTG 96 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhcCC-----------Cc--cC--CCCC-----C--CHHHHHHHHHHHHHHhC
Confidence 5678999877663 45666666554332100 00 00 0000 1 12344555555666668
Q ss_pred CCCCC-ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC----CccccCHHH
Q 006746 185 ISEND-YGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW----PRLRINSEK 258 (632)
Q Consensus 185 a~~~e-y~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~----~~~~i~~~~ 258 (632)
.+.+. ..|++|+|+++++.+++..+ +.+||+|++. ..|+. ....++..|++++.++++. .+..+++++
T Consensus 97 ~~~~~~~~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P~y~~-----~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~ 170 (405)
T PRK06207 97 APVDAADELIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFA-----NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQ 170 (405)
T ss_pred CCCCCCCCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchh-----HHHHHHHcCCEEEEEeccccCcccCCCcCHHH
Confidence 54322 37999999999999999998 6899997754 35543 2345677899999998752 235689999
Q ss_pred HHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCCCC-CCCC-CCCcE
Q 006746 259 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMDSF-GLSL-VRPDF 328 (632)
Q Consensus 259 l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~~l-dls~-~~~Df 328 (632)
|++++.++ ++++.++..+|+||..++ ++ |+++|+++|+++++|-+-.- +....++ .+.. ..-=+
T Consensus 171 l~~~~~~~------~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi 244 (405)
T PRK06207 171 LEEAFKAG------VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVI 244 (405)
T ss_pred HHHhhhhc------CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEE
Confidence 99988764 478999999999999998 55 77889999999999987432 2100011 1111 11128
Q ss_pred EEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 329 LICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
++.|+-|.||. | | +|+++..+++++.+
T Consensus 245 ~i~SfSK~~~l-p-GlRiG~ii~~~~l~~~~ 273 (405)
T PRK06207 245 TIMGPSKTESL-S-GYRLGVAFGSPAIIDRM 273 (405)
T ss_pred EEecchhhccC-c-ccceEEEEcCHHHHHHH
Confidence 89999999996 3 7 88887766655433
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-14 Score=148.75 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=116.8
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.+++++|.+++ .|++|+|+++++.+++..+ .+| +|++ ...|+. +...++..|++++.++
T Consensus 50 ~~lr~~la~~~~~~~~--~i~~t~G~~~~i~~~~~~l--~~g-~vl~~~p~y~~-----~~~~~~~~g~~~~~~~----- 114 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA--SVLPVNGAQEAIYLLPRLL--APG-RVLVLAPTYSE-----YARAWRAAGHEVVELP----- 114 (330)
T ss_pred HHHHHHHHHHhCCChh--hEEECCCHHHHHHHHHHHh--CCC-eEEEeCCCcHH-----HHHHHHHcCCEEEEeC-----
Confidence 6899999999998765 7999999999999988775 567 5554 334442 2345678899988775
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCCCCC-CCC-CCCC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKDMDS-FGL-SLVR 325 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~m~~-ldl-s~~~ 325 (632)
|++++++.+. + ++++++++.+|+||..+|.+ |+++|+++|+++++|.+...-..-.+ .++ ...+
T Consensus 115 ---d~~~l~~~~~-~------~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 184 (330)
T TIGR01140 115 ---DLDRLPAALE-E------LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFP 184 (330)
T ss_pred ---CHHHHHhhcc-c------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCC
Confidence 6788888773 2 36888899999999999944 56778899999999998642110011 111 1234
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
-++++.|+.|.||.+...+|+++++++.++.+.
T Consensus 185 ~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~ 217 (330)
T TIGR01140 185 GLVVLRSLTKFFGLAGLRLGFVVAHPALLARLR 217 (330)
T ss_pred CEEEEEecchhhcCchhhhhheeCCHHHHHHHH
Confidence 579999999999942123599998877665544
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=148.51 Aligned_cols=172 Identities=13% Similarity=0.166 Sum_probs=122.0
Q ss_pred HHHHHHHHHHc----CC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL----NI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l----~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.+++++ |. +++ ..|++|+|+++|+.+++..+ +++||+|++.. .|+. . ...++..|++++.+
T Consensus 68 ~~lr~~ia~~l~~~~g~~~~~~-~~I~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~~ 140 (387)
T PRK07683 68 LELRKAACNFVKDKYDLHYSPE-SEIIVTIGASEAIDIAFRTI-LEPGTEVILPAPIYPG-Y----EPIIRLCGAKPVFI 140 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCccc-h----HHHHHHcCCEEEEe
Confidence 36777788776 43 332 16999999999999999998 78999987643 3332 2 23346689999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCC-CCCCCC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPK-DMDSFG 320 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~-~m~~ld 320 (632)
+.+..+..++.+++++.+.++ +++++++..+|+||..++ ++ |+++|+++|+++++|.+..... +-....
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~------~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~ 214 (387)
T PRK07683 141 DTRSTGFRLTAEALENAITEK------TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTS 214 (387)
T ss_pred ecCcccCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCC
Confidence 887444557888998887653 488999999999999998 55 7888999999999999754311 000111
Q ss_pred CCC----CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 321 LSL----VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 321 ls~----~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+.. .+-.+++.|+-|.||.+-.-+|++++.++.++.+
T Consensus 215 ~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~ 255 (387)
T PRK07683 215 IAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHI 255 (387)
T ss_pred hhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHH
Confidence 111 1236889999999996322378888776554433
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-14 Score=150.15 Aligned_cols=163 Identities=9% Similarity=0.086 Sum_probs=117.5
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|++.......+.+++++++.++. .++.++|+++|+.++.. + +++||+|++. ..|.. ...++.....+.++++
T Consensus 48 Y~R~~~p~~~~le~~lA~leg~~----~~v~~~sG~aAi~~~l~-~-l~~GD~VI~~~~~yg~-~~~~~~~~~~~~~~~~ 120 (364)
T PRK07269 48 YTRTKNPTRAKLEETLAAIESAD----YALATSSGMSAIVLAFS-V-FPVGSKVVAVRDLYGG-SFRWFNQQEKEGRFHF 120 (364)
T ss_pred eeCCCCccHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHH-H-hCCCCEEEEecCCcCc-hHHHHHHHHhcCcEEE
Confidence 33333445568899999999864 57889999999999885 3 5899997754 34443 3445443333223322
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
.. ..|+++++++|+++| +++.+...+|+||...|++ |+++||++|+.+++|.+.+.|..-.+++
T Consensus 121 ~~--------~~d~~~l~~~i~~~T------klV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~- 185 (364)
T PRK07269 121 TY--------ANTEEELIAAIEEDT------DIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIE- 185 (364)
T ss_pred Ee--------cCCHHHHHHhcCcCc------eEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchh-
Confidence 11 147789999887654 8999999999999999999 9999999999999999976654223443
Q ss_pred CCCCCcEEEEccccccCCCCCc--eEEEEEeC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG--FGCLFVKK 351 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~ 351 (632)
.++|+++.|++|++|. +.. .|+++.++
T Consensus 186 --~gaDivv~S~tK~l~g-~~d~~gG~v~~~~ 214 (364)
T PRK07269 186 --LGADIVLHSATKYLSG-HNDVLAGVVVTND 214 (364)
T ss_pred --hCCcEEEecCceeccC-CCcccceEEEeCc
Confidence 5899999999998873 433 35445443
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-13 Score=150.89 Aligned_cols=210 Identities=13% Similarity=0.061 Sum_probs=136.8
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcC----
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN---- 184 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~---- 184 (632)
.+-+|.++..++|..++++..+.+..... ....|+... =..+.|+.|+++++
T Consensus 78 ~~i~~~~~~~~~P~~~~~~~~~~~~~~~~----------------------~~~~Y~~~~--G~~~LR~aia~~~~~~~g 133 (481)
T PTZ00377 78 FLLEDPSVSSLFPADVVARAKEYLNAIGG----------------------GTGAYTDSA--GYPFVRKAVAAFIERRDG 133 (481)
T ss_pred hhhcCccccccCCHHHHHHHHHHHHhCCC----------------------cccCcCccc--CCHHHHHHHHHHHHHhcC
Confidence 34557778889999999986543321100 001122111 12367888888765
Q ss_pred --CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCC-ccccCHHHHH
Q 006746 185 --ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWP-RLRINSEKLR 260 (632)
Q Consensus 185 --a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~-~~~i~~~~l~ 260 (632)
++++ +|++|+|+++|+.+++..+-..+||+|++.. .|+. ....++..|++++.++.+.. +..+++++|+
T Consensus 134 ~~~~~~--~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~-----y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~ 206 (481)
T PTZ00377 134 VPKDPS--DIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPL-----YSAAITLLGGKQVPYYLDEEKGWSLDQEELE 206 (481)
T ss_pred CCCChh--hEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchh-----HHHHHHHcCCEEEEEEeccccCCCCCHHHHH
Confidence 4444 7999999999999999998326899987653 4442 23455778999999998743 3468999999
Q ss_pred HHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----C-CCCCCC-----CCCCC--
Q 006746 261 KMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----P-KDMDSF-----GLSLV-- 324 (632)
Q Consensus 261 ~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g-~~m~~l-----dls~~-- 324 (632)
+.+.+..+...+++++++...+|+||..++ ++ |+++|+++|+++++|-+-.- + ....++ ++...
T Consensus 207 ~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~ 286 (481)
T PTZ00377 207 EAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYN 286 (481)
T ss_pred HHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhccccc
Confidence 998752111124688888889999999999 66 78889999999999986321 1 100111 11110
Q ss_pred -CC-cEEEEcccc-ccCCCCCceEEEEE
Q 006746 325 -RP-DFLICSFYQ-IFGENPSGFGCLFV 349 (632)
Q Consensus 325 -~~-Df~~~S~hK-~~G~~P~G~G~L~V 349 (632)
+. =+++.|+-| ++|.+.-.+|++++
T Consensus 287 ~~~~vi~~~S~SK~~~~~~GlRiG~~~~ 314 (481)
T PTZ00377 287 TDVELVSFHSTSKGIIGECGRRGGYFEL 314 (481)
T ss_pred CCeEEEEEecCCcccccCCcCceEEEEE
Confidence 00 156779999 46753234587776
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-13 Score=145.88 Aligned_cols=170 Identities=14% Similarity=0.144 Sum_probs=119.6
Q ss_pred HHHHHHHH----HcCCCCCC-ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMD----FLNISEND-YGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~----~l~a~~~e-y~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.+++ .+|.+.+. ..|++|+|+|+|+.+++.++ ..+||+|++. ..|+. + ...++..|++++.++.
T Consensus 65 ~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~vli~~p~y~~--~---~~~~~~~g~~~~~~~~ 138 (387)
T PRK07777 65 ELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGL-VEPGDEVLLIEPYYDS--Y---AAVIAMAGAHRVPVPL 138 (387)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchh--h---HHHHHHCCCEEEEeec
Confidence 34555554 46764322 25999999999999999888 6889997654 34442 2 3445667999999988
Q ss_pred cCC--ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 248 SWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 248 ~~~--~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
+.. +..+++++|++.+.++ ++++.++..+|+||..++ ++ |+++|+++|+++++|.+... +....
T Consensus 139 ~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~ 212 (387)
T PRK07777 139 VPDGRGFALDLDALRAAVTPR------TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHL 212 (387)
T ss_pred CCccCCCcCCHHHHHHhcCcc------cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcc
Confidence 632 3458999999888653 488899999999999987 55 78899999999999987532 21001
Q ss_pred CCC-CC-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 318 SFG-LS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 318 ~ld-ls-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
++. +. ..+.++++.|+.|.||. | | +|+++.+++.++.+
T Consensus 213 ~~~~~~~~~~~~i~~~S~SK~~g~-~-GlRiG~~~~~~~l~~~~ 254 (387)
T PRK07777 213 PLATLPGMRERTVTISSAAKTFNV-T-GWKIGWACGPAPLIAAV 254 (387)
T ss_pred cHhhCCCCcCcEEEEeechhhccC-c-CceeEEEecCHHHHHHH
Confidence 221 11 13468999999999995 3 6 58888776654433
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-13 Score=145.44 Aligned_cols=325 Identities=10% Similarity=0.150 Sum_probs=197.8
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.++.... .+. .. ..+...+..++++
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~------------------~~~--~~-----~~~~~~~l~~~l~ 92 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTL------------------TSR--AF-----HSDQLGPWYEKVA 92 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccc------------------ccc--cc-----CCHHHHHHHHHHH
Confidence 67889998533 44557777776654432100 000 00 1233456777888
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-------CCC-CeEE-EeccccchhhHHHHHHHHh----cCC-----E
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-------MSV-KNLL-TVYDYESEAVEAMIRTSEK----RGA-----R 241 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-------~~g-d~il-t~~d~~s~~v~~~~~~a~~----~G~-----~ 241 (632)
++++.+ .++|++++|+|+..++.... + .+| ++|+ +...||......+ .+... .+. .
T Consensus 93 ~~~~~~----~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~-~~~~~~~~~~~~~~~~~~ 167 (396)
T PRK04073 93 KLTGKD----MVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAV-SLSSEEEYKRGFGPMLPG 167 (396)
T ss_pred hcCCCC----eEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHH-hhcCCcccccCCCCCCCC
Confidence 887642 68999999999887766431 1 134 4565 4457776333222 11110 000 1
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
+..++. -+++++++.++++ ++++++..++|.+|...| ++ +.++|+++|+++++|.++.. |..
T Consensus 168 ~~~~~~------~d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~ 235 (396)
T PRK04073 168 IKKIPY------GDLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRT 235 (396)
T ss_pred ceEeCC------CCHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcC
Confidence 222222 1678888888643 589999999999999988 77 89999999999999998773 321
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
+..++.....||++++| |.+|.+.--+|++..+++.++.+.....+. .|
T Consensus 236 g~~~~~~~~~~~pdi~~~s--K~lg~gg~~ig~~~~~~~i~~~~~~~~~~~----------t~----------------- 286 (396)
T PRK04073 236 GKLFACDWDNVTPDMYILG--KALGGGVFPISCVAANRDILGVFTPGSHGS----------TF----------------- 286 (396)
T ss_pred cHHHHhhhcCCCCCEEEec--ccccCCCCcceEEEEcHHHHhhhcCCCCCC----------CC-----------------
Confidence 11234445578988765 977742123799998887765553211000 00
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.+ |.....+. .++|+.+.+. .+.+|.+.+
T Consensus 287 ------~~------------------~~~~~aaa------------------------~aaL~~~~~~---~l~~~~~~~ 315 (396)
T PRK04073 287 ------GG------------------NPLACAVS------------------------IAALEVLEEE---KLPERSLEL 315 (396)
T ss_pred ------CC------------------CHHHHHHH------------------------HHHHHHHHhc---CHHHHHHHH
Confidence 00 00001111 1567666543 456788889
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
.++|.+.|.++.+ +.+ ++. ..+|.++.+.+.+ ....+.+.+.++||.++.
T Consensus 316 ~~~l~~~L~~l~~------~~i---~~~--~~~g~~~~~~~~~------~~~~~~~~l~~~Gv~~~~------------- 365 (396)
T PRK04073 316 GEYFKEQLKEIDN------PMI---KEV--RGRGLFIGVELNE------PARPYCEALKEEGLLCKE------------- 365 (396)
T ss_pred HHHHHHHHHhhcC------Ccc---cce--ecceEEEEEEecc------hHHHHHHHHHHCCeEEec-------------
Confidence 9999999998832 323 111 1346666666543 234444445557888741
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
.+.++||+++++..|.|||+++++.|++++
T Consensus 366 ---------------------------~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 366 ---------------------------THETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred ---------------------------CCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 022589999999999999999999999875
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-13 Score=146.77 Aligned_cols=166 Identities=11% Similarity=0.159 Sum_probs=122.4
Q ss_pred HHHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|+++++ ++++ .|++|+|+++++++++.++ ..+||+|++.. .|.. + ...++..|++++.+
T Consensus 76 ~~lr~~ia~~l~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~----~-~~~~~~~g~~v~~v 147 (394)
T PRK06836 76 PEVREAIAESLNRRFGTPLTAD--HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVE----Y-RFYVDNHGGKLVVV 147 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCcC--cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcc----H-HHHHHHcCCEEEEE
Confidence 467888888875 4554 7999999999999999998 68999977543 3332 2 34457789999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhh------CCcEEEEeccccC---
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQE------NDWHILIDACALG--- 312 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~------~g~~vlvDaaq~~--- 312 (632)
+.+..++.++.++++++++++ ++++++++.+|+||..+|.+ |+++|++ +|+++++|.+...
T Consensus 148 ~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~ 221 (394)
T PRK06836 148 PTDTDTFQPDLDALEAAITPK------TKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY 221 (394)
T ss_pred ecCCccCcCCHHHHHhhcCcC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc
Confidence 987444678999999988654 48999999999999999965 5667888 8999999997431
Q ss_pred -CCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCC
Q 006746 313 -PKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 313 -g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
+.. .+.-++.+.-.+++.|+.|.||.+.-.+|++++.+..
T Consensus 222 ~~~~-~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~ 262 (394)
T PRK06836 222 DGAE-VPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEM 262 (394)
T ss_pred CCCC-CCChHHccCcEEEEecchhhccCcceeeEEEecCHHH
Confidence 111 1111223344789999999998532347888876654
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-13 Score=144.38 Aligned_cols=201 Identities=10% Similarity=0.133 Sum_probs=122.6
Q ss_pred CCceEeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (632)
Q Consensus 107 ~~~vyLD~ag~gl~----~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~ 182 (632)
+++.|||+++.+.+ .+.+++++.+.+.... .. ...++. +....+..++.+++|+++
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g--------~~---------~~~~~~---~~~~~~~~~~l~~~la~~ 103 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTG--------SL---------HLSSSR---TRVRSQILKDLEEALSEL 103 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHHHhC--------CC---------CCCccc---hhhhhHHHHHHHHHHHHH
Confidence 57889999887766 6777777765443210 00 000011 111346778999999999
Q ss_pred cCCCCCCccEEEeCCHHHHHHHHHhhC---CCCCCCe-EE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHH
Q 006746 183 LNISENDYGMVFTANRTSAFKLLAESY---PFMSVKN-LL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSE 257 (632)
Q Consensus 183 l~a~~~ey~vvft~naT~al~lv~~sl---~~~~gd~-il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~ 257 (632)
++. + .++|+ ++++|...++..+ -+.+|+. ++ ....+|. ++....... +.+.+++.+|. .|.+
T Consensus 104 ~~~--~--~~~~~-sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~-s~~~~~~~~-~~~~~v~~~~~------~d~~ 170 (402)
T PRK07505 104 FGA--S--VLTFT-SCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHA-SLNILKGIC-ADETEVETIDH------NDLD 170 (402)
T ss_pred hCC--C--EEEEC-ChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhH-hHHhhhhhh-hcCCeEEEeCC------CCHH
Confidence 987 2 45566 4555665444321 1233443 43 4445554 332222222 24667777765 3778
Q ss_pred HHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC---C-C-CC---CCCCCCCCCCcE
Q 006746 258 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG---P-K-DM---DSFGLSLVRPDF 328 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~---g-~-~m---~~ldls~~~~Df 328 (632)
++++++.+++ +++++....|.||...|++ +.++|+++|+++++|.++.. | . .+ ..++....+..+
T Consensus 171 ~l~~~~~~~~------~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i 244 (402)
T PRK07505 171 ALEDICKTNK------TVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTI 244 (402)
T ss_pred HHHHHHhcCC------CEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeE
Confidence 9998886543 6777777788999999999 99999999999999999743 1 1 00 112211122346
Q ss_pred EEEccccccCCCCCceEEEEE
Q 006746 329 LICSFYQIFGENPSGFGCLFV 349 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G~G~L~V 349 (632)
++.|+-|.+|. .| |++.+
T Consensus 245 ~~~s~sK~~~~--~G-g~~~~ 262 (402)
T PRK07505 245 IAASLGKAFGA--SG-GVIML 262 (402)
T ss_pred EEEechhhhhc--cC-eEEEe
Confidence 77799998883 34 66544
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=141.56 Aligned_cols=303 Identities=17% Similarity=0.201 Sum_probs=195.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeC-CHHHHHHHHHhhCCCCCCCe-EEE-eccccchhhHHHHHHHHhcCCEEEEE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTA-NRTSAFKLLAESYPFMSVKN-LLT-VYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~-naT~al~lv~~sl~~~~gd~-ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
..+++++++.+.++|++| ++|.|.|.+ ++|..+.++.-++--..+.. +.+ ..+.. +..| |++.+..+..+
T Consensus 49 ~~v~~~a~~~lreLl~iP-d~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~--a~~e----A~~~~~~~~~~ 121 (365)
T COG1932 49 KNVLEEAEKDLRELLNIP-DDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEF--AIKE----AKKVGKQPKLI 121 (365)
T ss_pred HHHHHHHHHHHHHHhCCC-CCceEEEEcCccHHHHHHHHHhhhcccCceeEeeeehhHh--HHHH----HHHhccccccc
Confidence 678999999999999998 579999987 58999999999984333321 332 22333 2334 44444322222
Q ss_pred ec---cCCcccc-CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 246 EF---SWPRLRI-NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 246 ~~---~~~~~~i-~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
.. ..+.+.+ +++.+. +.+ +...|.+++..+.+|+.+|-. ... .+..+++|+++.+.. .++|
T Consensus 122 ~~~~~~~~~~~iP~~~~~~--~~~------~~ayv~~~~NeTi~Gv~v~~~p~~~----~~~~~v~D~SS~ils--r~iD 187 (365)
T COG1932 122 DARIEEAGYGSIPDLSKWD--FSD------NDAYVHFCWNETISGVEVPELPDIG----SDGLLVADASSAILS--RPID 187 (365)
T ss_pred ccceeccCccCCCChhhcc--cCC------CccEEEEecCCcccceEccCCCCCC----CCceEEEecccHHhc--CCCC
Confidence 11 1112222 222221 221 246799999999999999842 211 127899999987765 5899
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
++ +.|.+.++.+|-+| |.|+++++||+++++++++... |..-. +.. .. +.+
T Consensus 188 vs--k~dviyagaQKnlG--paGltvvIvr~~~l~r~~~~~~-------P~if~-y~~------~~-----------~~~ 238 (365)
T COG1932 188 VS--KYDVIYAGAQKNLG--PAGLTVVIVRPDLLERAESYTL-------PSIFD-YLT------HA-----------DNG 238 (365)
T ss_pred hh--HcceEEEehhhccC--ccceEEEEEcHHHHhcccccCC-------chHhh-chh------hh-----------ccC
Confidence 87 56999999999999 9999999999999988765310 00000 000 00 011
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVN 479 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~ 479 (632)
.+-|+|.+.++- .....|+++.+. |++.+++|.+.=++.|++
T Consensus 239 ----------------s~yNTPptfa~y---------------------~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~ 281 (365)
T COG1932 239 ----------------SMYNTPPTFAWY---------------------LLGLVFKWLKSQGGLEALEARNQAKAQLLYD 281 (365)
T ss_pred ----------------CccCCcHHHHHH---------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 123344433332 112788888887 699999999999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCC-CCCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPK-IRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~-~~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
.+.+- + .|.+. .+..|+ -.|+|.+.+.+ ++...|+++.+ .|...-.|
T Consensus 282 ~id~s--------~---fy~~~v~~~~RS~mnV~f~~~~~~---ld~~fv~eae~-~gl~~lkG---------------- 330 (365)
T COG1932 282 WIDKS--------D---FYRNLVAKANRSRMNVTFTLVDAE---LDKGFVAEAEA-AGLIYLKG---------------- 330 (365)
T ss_pred HHHhC--------C---ccccccchhhccceeEEEEcCcHH---HHHHHHHHHHH-cCCceecc----------------
Confidence 99875 1 12222 123454 46788877633 56666665544 44433222
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+-.|.+|+|+.---..|||+.|++|++.|..
T Consensus 331 ----------------------hr~vgGmRasiynA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 331 ----------------------HRSVGGLRASIYNAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred ----------------------ccCCCceeeeeecCCCHHHHHHHHHHHHHHHH
Confidence 12345699999999999999999999998854
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-13 Score=147.92 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCC-
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWP- 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~- 250 (632)
+.+.|++|+++++.. .|++|.|+|+|+.++..++ +++|| |++..-|......+ .+..|++++.++.+..
T Consensus 80 ~~~Lreaia~~~~~~----~vv~t~ggt~A~~~~~~al-l~pGD-Vii~~p~~~~~~~~----i~~~G~~~v~v~~~~~~ 149 (460)
T PRK13238 80 YYRLEDAVKDIFGYP----YTIPTHQGRAAEQILFPVL-IKKGD-VVPSNYHFDTTRAH----IELNGATAVDLVIDEAL 149 (460)
T ss_pred HHHHHHHHHHHhCCC----cEEECCCHHHHHHHHHHHh-CCCCC-EEccCCcccchHHH----HHHcCCEEEEEeccccc
Confidence 357899999999974 4899999999999999998 89999 76554444322222 3457999999988521
Q ss_pred --------ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCc-cccc---hH-HHHHHhhCCcEEEEeccccCCCC--
Q 006746 251 --------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYP---YL-WMRIAQENDWHILIDACALGPKD-- 315 (632)
Q Consensus 251 --------~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG-~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~-- 315 (632)
.+.+|.++|++.|++++ .++++++++...+|.|| ..++ ++ |.++|+++|++++.|+|+....-
T Consensus 150 ~~~~~~~f~g~id~e~Le~~i~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f 227 (460)
T PRK13238 150 DTGSRHPFKGNFDLEKLEALIEEVG--AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYF 227 (460)
T ss_pred cccccccccCCcCHHHHHHHHhhcC--CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhh
Confidence 24599999999998632 23579999999999998 6665 46 88899999999999998864210
Q ss_pred -------CCCCCCCC------CCCcEEEEccccccCCCCCceEEEEEeC-CCccccCC
Q 006746 316 -------MDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVD 359 (632)
Q Consensus 316 -------m~~ldls~------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~-~~~~~L~~ 359 (632)
.....+.. ...|++++|++|.+.. |.| |+|+.++ ++++.++.
T Consensus 228 ~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~-~~G-G~i~~~d~~l~~~~~~ 283 (460)
T PRK13238 228 IKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMV-NIG-GLLCFRDEDLFTECRT 283 (460)
T ss_pred hhhccccccCCCHHHHhhhhcccCcEEEEecccCCCC-cce-eEEEcChHHHHHHhhh
Confidence 01112111 1369999999995443 776 8888884 55555543
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-13 Score=157.52 Aligned_cols=357 Identities=13% Similarity=0.092 Sum_probs=223.6
Q ss_pred ccCcCCCCceEeecCCCCCCCH---HHHH-HHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHH
Q 006746 101 YYQLSLSNHTCLDYFGIGLFSY---NQLH-KQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMK 176 (632)
Q Consensus 101 f~~L~~~~~vyLD~ag~gl~~~---~~~~-a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R 176 (632)
|..|..+|+++-.+.|.|.++. ++++ .+... |.+| + +|+.=-| ...+|. -+.+=+.+
T Consensus 55 ~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~--------p~~~------T-aytPyQ~--EisQG~--Le~l~e~Q 115 (939)
T TIGR00461 55 LKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLEN--------PGWY------T-AYTPYQP--EISQGR--LEALLNFQ 115 (939)
T ss_pred HHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhC--------chhh------h-cCCCCCh--hhhhHH--HHHHHHHH
Confidence 5556556788888889998876 5555 33221 2111 0 1111111 122232 35666899
Q ss_pred HHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCC--CCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccc
Q 006746 177 KRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMS--VKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLR 253 (632)
Q Consensus 177 ~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~--gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~ 253 (632)
..|+++.|.+.. +..+...+|.+.+.++.++.... +++|++ ...||. ...-+...++..|++|+.++.
T Consensus 116 t~i~eLtGm~~a--NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~-~~~v~~t~a~~~g~~v~~~~~------ 186 (939)
T TIGR00461 116 TVVSDLTGLPVA--NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQ-TKSVLHTRAKPFGIEVIVVDC------ 186 (939)
T ss_pred HHHHHHHCCChh--hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcc-hHHHHHHHHHhcCcEEEEEcH------
Confidence 999999999865 45677899999998887764433 356765 456765 555556677889999988743
Q ss_pred cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 006746 254 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS 332 (632)
Q Consensus 254 i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S 332 (632)
++|+..+ + + ..++....|..|.+.+++ |++++|++|.++++++-..+.. ......++++|+++.+
T Consensus 187 ---~~l~~~~--~------~-~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~--ll~~Pge~GaDi~vg~ 252 (939)
T TIGR00461 187 ---SDIKKAV--D------V-FGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALT--LLTPPGHYGADIVLGS 252 (939)
T ss_pred ---HHHhhcC--C------E-EEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhC--CcCCHHHcCCcEEeeC
Confidence 3454433 1 2 245556779999999999 9999999999999977544432 2333456899999888
Q ss_pred cccc-----cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCc
Q 006746 333 FYQI-----FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 407 (632)
Q Consensus 333 ~hK~-----~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~ 407 (632)
.+++ ||. | +.|++.+|++....+..+..|=+++. ..++ .+.--+.+.+. +. .+|
T Consensus 253 ~q~fg~p~g~GG-P-~aG~~a~~~~l~r~lPgrivG~s~D~--~G~~------~~~l~LqtReq-hI--rRe-------- 311 (939)
T TIGR00461 253 SQRFGVPMGYGG-P-HAAFFAVKDEYNRKMPGRIVGVSKDA--LGNT------ALRLALQTREQ-HI--RRD-------- 311 (939)
T ss_pred CCccCCCCCCCC-C-ceeeeeecHhhHhhCCCCceeEEecC--CCCc------cceeecccccc-cc--ccc--------
Confidence 8873 343 4 69999999988777766655411110 0000 00000111110 10 012
Q ss_pred cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhH--HHHHHhhCHHHHHHHHHHHHHHHHHHHHccC
Q 006746 408 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRG--LDQVDSLGLTMISRRGRCLINWLVNALMKLQ 485 (632)
Q Consensus 408 ~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a--Ld~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~ 485 (632)
-+|.|+..-++|- ++ .++ +.++-..|+.+|.+|+..++.+|.++|.++
T Consensus 312 --------kAtSNICt~qaL~--------------------a~-~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~- 361 (939)
T TIGR00461 312 --------KATSNICTAQVLL--------------------AN-VASSYCVYHGPKGLKNIARRIHSLTSILANGLEND- 361 (939)
T ss_pred --------ccCcchhHHHHHH--------------------HH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 3445554444442 00 022 344445689999999999999999999986
Q ss_pred CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhc
Q 006746 486 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 565 (632)
Q Consensus 486 h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~ 565 (632)
| +++..+ ..-..+.+.+.. .+.+.+.+.+.++||.++..
T Consensus 362 -----G---~~~~~~----~fF~~~~v~~~~-----~~~~~i~~~~~~~gi~l~~~------------------------ 400 (939)
T TIGR00461 362 -----P---HELINK----TWFDTLTVKVGN-----GISSELLKAAEEFNINLRAV------------------------ 400 (939)
T ss_pred -----C---CcccCC----CccceEEEEeCC-----CCHHHHHHHHHHCCCeeeec------------------------
Confidence 5 344333 123345555432 24566666666789987621
Q ss_pred cccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 566 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
..+.|++|++.++|.+||+.|++.+.
T Consensus 401 ----------------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 401 ----------------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred ----------------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 12489999999999999999999985
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-12 Score=143.58 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=119.2
Q ss_pred HHHHHHHHHHcCC------CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFLNI------SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l~a------~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|+++++. +++ +|++|+|+|+|+.+++.++ ..+||+|++. ..|.. + ...++..|++++.+
T Consensus 76 ~~lr~~ia~~l~~~~~~~~~~~--~ii~t~G~t~al~~~~~~l-~~~gd~Vlv~~p~y~~----~-~~~~~~~g~~~~~~ 147 (403)
T TIGR01265 76 LAAREAVAEYLSSDLPGKLTAD--DVVLTSGCSQAIEICIEAL-ANPGANILVPRPGFPL----Y-DTRAAFSGLEVRLY 147 (403)
T ss_pred HHHHHHHHHHHHhhcCCCCCHH--HEEEecChHHHHHHHHHHh-CCCCCEEEEeCCCchh----H-HHHHHHcCCEEEEe
Confidence 4689999999985 333 7999999999999999998 4889997654 34432 2 34567789999998
Q ss_pred eccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCC
Q 006746 246 EFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDM 316 (632)
Q Consensus 246 ~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m 316 (632)
+.+. .++.++.+++++++.++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.+..- +...
T Consensus 148 ~~~~~~~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 221 (403)
T TIGR01265 148 DLLPEKDWEIDLDGLEALADEK------TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPF 221 (403)
T ss_pred cCCcccCCccCHHHHHHHhCcC------ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCc
Confidence 8752 34568999999888654 488999999999999997 66 88899999999999997432 1100
Q ss_pred CC-CCCCCCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 317 DS-FGLSLVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 317 ~~-ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
.+ ..+.....=+++.|+-|.|+.+--.+|++++.
T Consensus 222 ~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~ 256 (403)
T TIGR01265 222 IPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIH 256 (403)
T ss_pred cchhhhccCCcEEEEeecccccCCCcceEEEEEEe
Confidence 11 11111111267789999988632347888775
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=142.80 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=117.0
Q ss_pred HHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ +++++ +|++|+|+++++.+++..+ +++||+|++. ..|.. ....++..|+++..++
T Consensus 76 ~lr~~ia~~~~~~~~~~~~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~p~y~~-----~~~~~~~~g~~~v~~~ 147 (404)
T PRK09265 76 SARKAIMQYYQQKGIPDVDVD--DIYIGNGVSELIVMAMQAL-LNNGDEVLVPAPDYPL-----WTAAVSLSGGKPVHYL 147 (404)
T ss_pred HHHHHHHHHHhccCCCCCCcc--cEEEeCChHHHHHHHHHHh-CCCCCEEEEeCCCCcC-----hHHHHHHcCCEEEEEe
Confidence 6888899987 67766 7999999999999999988 7899997654 45553 1334566799988887
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
.+.. ++.++.+++++.+.++ ++++++++.+|+||..+| ++ |+++|+++|+++++|-+..- +....
T Consensus 148 ~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 221 (404)
T PRK09265 148 CDEEAGWFPDLDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHI 221 (404)
T ss_pred cccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcC
Confidence 7532 4568899999888654 489999999999999999 77 88999999999999986321 21001
Q ss_pred CC-CCCCCCCc-EEEEccccccCCCCCc--eEEEEEe
Q 006746 318 SF-GLSLVRPD-FLICSFYQIFGENPSG--FGCLFVK 350 (632)
Q Consensus 318 ~l-dls~~~~D-f~~~S~hK~~G~~P~G--~G~L~Vr 350 (632)
++ .+.. +.. +++.|+-|.||. | | +|+++..
T Consensus 222 ~~~~~~~-~~~vi~~~S~SK~~~~-p-GlRiG~~v~~ 255 (404)
T PRK09265 222 SIASLAP-DLLCVTFNGLSKAYRV-A-GFRVGWMVLS 255 (404)
T ss_pred CHHHcCC-CceEEEEecchhhccC-c-ccceEEEEEe
Confidence 11 1111 112 355778899985 3 6 5888864
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=143.42 Aligned_cols=171 Identities=15% Similarity=0.114 Sum_probs=121.0
Q ss_pred HHHHHHHHHc----CC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----NI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ |. +++ ..|++|+|+++|+.+++.++ +.+||+|++.. .|.. ....++..|++++.++
T Consensus 95 ~Lr~aia~~~~~~~g~~~~~~-~~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~-----~~~~~~~~g~~~~~v~ 167 (413)
T PLN00175 95 ELNSAIAERFKKDTGLVVDPE-KEVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDS-----YEATLSMAGAKIKTVT 167 (413)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CCEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchh-----HHHHHHHcCCEEEEEE
Confidence 4455555544 53 443 25999999999999999988 78999987653 3332 2344577899999999
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC---CCCCCC-
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG---PKDMDS- 318 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~---g~~m~~- 318 (632)
++.++..+++++|++++.++ ++++.+++.+|+||..++ ++ |+++|+++|+++++|.+-.. .....+
T Consensus 168 ~~~~~~~~~~~~l~~~~~~~------~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~ 241 (413)
T PLN00175 168 LRPPDFAVPEDELKAAFTSK------TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISM 241 (413)
T ss_pred CCcccCCCCHHHHHHhcCcC------ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccCh
Confidence 87445678999999988654 488999999999999997 55 67889999999999997432 111011
Q ss_pred CCCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 319 FGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 319 ldls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
..+.. .+..+++.|+-|.||.+..-+|+++..++.++.+
T Consensus 242 ~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l 281 (413)
T PLN00175 242 ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 281 (413)
T ss_pred hhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHH
Confidence 12211 2346888999999986323468888776655433
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=142.11 Aligned_cols=176 Identities=10% Similarity=0.132 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHcCCCCC-CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 170 GLESAMKKRIMDFLNISEN-DYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~-ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.+.+++.+++++|++-+ +.+|++|+|+++|+.+++.++ +.+||+|++. ..|.. . ...++..|++++.++.
T Consensus 70 ~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~-~----~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 70 ALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDS-Y----APIVRLQGATPVAIKL 143 (384)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccc-h----HHHHHHcCCEEEEEec
Confidence 5566777777778887521 126999999999999999998 7899997754 45543 2 2334567999999998
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMDSF 319 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~~l 319 (632)
++.+..++.++|++++.++ ++++.++..+|+||..++ ++ |+++|+++|+++++|.+-.- +....++
T Consensus 144 ~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~ 217 (384)
T PRK12414 144 SPEDFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSM 217 (384)
T ss_pred CccccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCc
Confidence 7556678999999888643 489999999999999885 55 77889999999999997431 2110111
Q ss_pred -CCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 320 -GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 320 -dls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.+.. .+--+++.|+-|.||.+-..+|++++.+++++.+
T Consensus 218 ~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l 257 (384)
T PRK12414 218 ARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEI 257 (384)
T ss_pred ccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHH
Confidence 1111 1124899999999985322358888877665444
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-12 Score=140.59 Aligned_cols=288 Identities=9% Similarity=0.112 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-C----CCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-F-M----SVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-~----~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
+...+..+++++++|.+ .+++++|+++|+.+++..+. + . ++++|++. ..||. ...+.. ..++..
T Consensus 69 ~~~~~l~~~la~~~g~~----~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~-~~~~~~----~~~~~~ 139 (379)
T TIGR00707 69 EPQEELAEKLVEHSGAD----RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHG-RTMGAL----SATGQP 139 (379)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCC-ccHHHH----HhcCCh
Confidence 55678999999999874 69999999999998887542 1 1 26787654 35553 222211 111111
Q ss_pred EE----EeccCCccc----cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc-c---hH-HHHHHhhCCcEEEEecc
Q 006746 243 MS----AEFSWPRLR----INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-P---YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 243 ~~----v~~~~~~~~----i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~-p---l~-i~~~a~~~g~~vlvDaa 309 (632)
.. .+.. ++.. -|++++++.+.++ ++++.+.+..+.+|... + ++ +.++|+++|+++++|.+
T Consensus 140 ~~~~~~~~~~-~~~~~~~~~d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~ 212 (379)
T TIGR00707 140 KYQKGFEPLV-PGFSYAPYNDIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEV 212 (379)
T ss_pred hhhccCCCCC-CCceeeCCCCHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 10 1111 1111 1688998888753 47888888888888753 3 66 88999999999999999
Q ss_pred cc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCC
Q 006746 310 AL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 310 q~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
+. .+.+ ..+++.....+|++ ++.|.+| ++..+|+++.+++.++.+.+...+ . .|
T Consensus 213 ~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~-~---------~~---------- 269 (379)
T TIGR00707 213 QTGIGRTGKFFAYEHYGIEPDII--TLAKGLG-GGVPIGATLAKEEVAEAFTPGDHG-S---------TF---------- 269 (379)
T ss_pred ccCCCccchhhhHHhcCCCCCEE--EEccccc-CCcccEEEEEcHHHHhhhcCCCCC-C---------CC----------
Confidence 75 3321 01222223467866 4679888 245689999888776655432110 0 00
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
+. +.+...+.. ++|+++.. ..+
T Consensus 270 --------------~~-----------------~~~~~~aa~------------------------aaL~~~~~---~~~ 291 (379)
T TIGR00707 270 --------------GG-----------------NPLACAAAL------------------------AVLEVIEK---ERL 291 (379)
T ss_pred --------------CC-----------------CHHHHHHHH------------------------HHHHHHHh---hhH
Confidence 00 001112221 56666543 346
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
.++.+.+.+++++.|.++.. . +.+ .+ . ...|.++.+.+.+ +...+.+.+.++||.++.+
T Consensus 292 ~~~~~~~~~~~~~~l~~~~~------~-~~~-~~-~-~~~g~~~~~~~~~------~~~~~~~~l~~~Gv~v~~~----- 350 (379)
T TIGR00707 292 LENVKEKGDYFKERLEELGK------N-YPN-KE-V-RGKGLMLGIELEA------PCKDIVKKALEKGLLVNCA----- 350 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHh------h-CCC-Cc-c-ccCceEEEEEecC------cHHHHHHHHHHCCcEEeeC-----
Confidence 67888888888888887611 1 000 11 1 1235566676543 2456666677789988631
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+.+.||+|+++..|.||++++++.|++.+
T Consensus 351 -----------------------------------~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 351 -----------------------------------GPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred -----------------------------------CCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 23589999999999999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-13 Score=143.17 Aligned_cols=163 Identities=16% Similarity=0.242 Sum_probs=119.7
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCcc
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRL 252 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~ 252 (632)
+.|+.|++++|++++ .|++|+|+++++.+++.++ +++||+|++.. .|+ .....++..|++++.++.+ +++
T Consensus 75 ~lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~-----~~~~~~~~~g~~~~~v~~~-~~~ 145 (371)
T PRK05166 75 ALREAIAARTGVPAD--RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFP-----LHEDYPTMMGARVERVTVT-PDL 145 (371)
T ss_pred HHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChH-----HHHHHHHHcCCeEEEeecC-CCC
Confidence 689999999999865 7999999999999999998 78999977542 443 2244567889999999987 556
Q ss_pred ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEecccc--C-CCCCCC-CCC-CCC
Q 006746 253 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACAL--G-PKDMDS-FGL-SLV 324 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~--~-g~~m~~-ldl-s~~ 324 (632)
.++.+++++.++++ ++++++++.+|+||..+|.+ +.++++. .++++++|.+-. . +....+ +.+ ...
T Consensus 146 ~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 219 (371)
T PRK05166 146 GFDLDALCAAVARA------PRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKAR 219 (371)
T ss_pred CCCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhc
Confidence 78999999988754 38899999999999999987 7666553 478899999732 1 110001 111 111
Q ss_pred -CCcEEEEccccccCCCCCceEEEEEeC
Q 006746 325 -RPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 325 -~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
.--+++.|+-|.||.+---+|++++.+
T Consensus 220 ~~~vi~i~SfSK~~~l~GlRiG~~i~~~ 247 (371)
T PRK05166 220 GLPWIVLRTFSKAYGLAGLRVGYGLVSD 247 (371)
T ss_pred CCCEEEEeechHhhhcchhheeeeecCC
Confidence 123788999999985322368877643
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-12 Score=147.17 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=119.3
Q ss_pred HHHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|++++ +++++ +|++|+|+++++.+++.++ +.+||+|++. ..|+. + ...++..|++++.+
T Consensus 188 ~~lReaia~~~~~~~~~~~~~~--~I~it~G~~eal~~~~~~l-~~~Gd~Vli~~P~y~~--y---~~~~~~~g~~~v~~ 259 (517)
T PRK13355 188 FSARKAIMQYAQLKGLPNVDVD--DIYTGNGVSELINLSMSAL-LDDGDEVLIPSPDYPL--W---TACVNLAGGTAVHY 259 (517)
T ss_pred HHHHHHHHHHHHhcCCCCCChh--HEEEeCcHHHHHHHHHHHh-CCCCCEEEEcCCCCcC--H---HHHHHHCCCEEEEe
Confidence 47899999988 67765 7999999999999999998 7899997754 45553 2 23456789999999
Q ss_pred eccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEecccc----CCCCC
Q 006746 246 EFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACAL----GPKDM 316 (632)
Q Consensus 246 ~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~----~g~~m 316 (632)
+.+.. +..+|+++|+++++++ ++++++...+|+||..+| ++ |+++|+++++++++|.+-. -+..
T Consensus 260 ~~~~~~~~~~d~~~l~~~~~~~------~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~- 332 (517)
T PRK13355 260 RCDEQSEWYPDIDDIRSKITSR------TKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE- 332 (517)
T ss_pred ecCcccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCC-
Confidence 87632 3568999999988764 488999999999999999 66 7889999999999999732 1211
Q ss_pred CCCCCCCCCCcE---EEEccccccCCCCCceEEEEEe
Q 006746 317 DSFGLSLVRPDF---LICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 317 ~~ldls~~~~Df---~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
...+....+|. ++.|+-|.||.+-.-+|++++.
T Consensus 333 -~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~ 368 (517)
T PRK13355 333 -HTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILS 368 (517)
T ss_pred -cccHHHhCCCCeEEEEecchhhccCcccceEEEEee
Confidence 11111122342 2378899988532226888864
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-12 Score=143.95 Aligned_cols=280 Identities=18% Similarity=0.176 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--CC---C--C-----C-eEEEeccccchhhHHHHHH
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--FM---S--V-----K-NLLTVYDYESEAVEAMIRT 234 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--~~---~--g-----d-~ilt~~d~~s~~v~~~~~~ 234 (632)
...+.+++-..+++++|+++ +..=+||+++|+|.-+...... |. . + . +|+.+..-|. .| ...
T Consensus 99 a~~~E~~~v~~l~~l~~~~~-~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~---s~-~Ka 173 (460)
T COG0076 99 AAELEERVVNMLSDLLGAPE-EASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHF---SF-EKA 173 (460)
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchh---HH-HHH
Confidence 45788899999999999984 4567899999999886554432 10 0 1 1 4777765443 13 566
Q ss_pred HHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC-
Q 006746 235 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG- 312 (632)
Q Consensus 235 a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~- 312 (632)
++-.|++++.++.+..+.++|+++++++|++++.. +.|+-+.-.+.+|.+=|++ |.++|++++++++||||-.+
T Consensus 174 a~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~----g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~ 249 (460)
T COG0076 174 ARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIG----GVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGF 249 (460)
T ss_pred HHHhCCCceeEEeccCccccCHHHHHHHHHhhccC----ceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccce
Confidence 77889999999998447899999999999987621 2478888889999999999 99999999999999998444
Q ss_pred --CC--CCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCC-CccccC---CCCCCCceeecccccccccccccCCC
Q 006746 313 --PK--DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILV---DNTSSGMVSLLPAKKQLWLTDEFSSC 384 (632)
Q Consensus 313 --g~--~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~-~~~~L~---~~~~gG~v~~~~~~~~~~~~~~~~~~ 384 (632)
+. ....+|...-++|-+++++||++.. |.|+|++++|++ .+.... ..+.+|.. .+.
T Consensus 250 ~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~a-P~~~G~il~rd~e~l~~~~~~~~~yl~~~~--~~~------------- 313 (460)
T COG0076 250 LLPFLEPDGRWDFGLEGVDSITVDGHKYGLA-PIGCGVVLFRDEEALRRILIFADYYLPGGG--IPN------------- 313 (460)
T ss_pred eecccCccchhhcCCCCceEEEECcccccCC-CCCceEEEEECHHHhhhhhhcccccCCCCC--cCc-------------
Confidence 21 1123355556899999999998887 899999999998 332221 11111110 000
Q ss_pred CCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHH
Q 006746 385 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 464 (632)
Q Consensus 385 ~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~ 464 (632)
+ . ..++ |.|. ..+..+ ..|..+-..|..
T Consensus 314 -~-------t----i~~s------------r~~~---~~~~~~-------------------------~~l~~lG~eGy~ 341 (460)
T COG0076 314 -F-------T----ILGS------------RPGR---QALALY-------------------------ANLRRLGREGYR 341 (460)
T ss_pred -e-------e----Eeec------------cchH---HHHHHH-------------------------HHHHHhCHhHHH
Confidence 0 0 0011 1111 111111 344444345788
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEc
Q 006746 465 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS 539 (632)
Q Consensus 465 ~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr 539 (632)
++.++...+++||.+.|.++ +.+++..+. ..++|+|..++... ........+++.|-.++
T Consensus 342 ~l~~~~~~~a~~la~~l~~~--------~~~e~~~~p----~l~~V~fr~~~~~~---~~~~~~~~~~~~gw~v~ 401 (460)
T COG0076 342 KLLDRTLELARYLAEELEKL--------GDFELVNEP----ELPIVAFRLKDDED---TLADLSERLDRRGWQVP 401 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhC--------CCcEeecCC----ccceEEEEcCCccc---chhchHHHHHhcCceee
Confidence 88999999999999999998 557777753 68999999966321 12222334444565554
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-12 Score=139.98 Aligned_cols=173 Identities=9% Similarity=0.101 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC-CeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCC-
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-KNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWP- 250 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g-d~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~- 250 (632)
.+.|+.|++++|++++ +|++|+|+++++.+++..+ ..+| ++|++..-..+ .....++..|++++.++.+.+
T Consensus 62 ~~lr~~ia~~~~~~~~--~I~~t~G~~~~l~~~~~~~-~~~g~~~vlv~~p~y~----~~~~~~~~~g~~~~~v~~~~~~ 134 (364)
T PRK04781 62 PGLRSALAALYGCAPE--QLLIGRGSDEAIDLLVRAL-CVPGRDAVLVTPPVFG----MYAVCARLQNAPLVEVPLVDGA 134 (364)
T ss_pred HHHHHHHHHHhCcChH--HEEEeCCHHHHHHHHHHHh-cCCCCCeEEEcCCChH----HHHHHHHHcCCEEEEEecCCCc
Confidence 5899999999999876 7999999999999999998 5677 67765432222 334456778999999997422
Q ss_pred -ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEecccc--CCCCCCCCCC-CC
Q 006746 251 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACAL--GPKDMDSFGL-SL 323 (632)
Q Consensus 251 -~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~--~g~~m~~ldl-s~ 323 (632)
...++.+++.+.+.. .+++++.+++.+|+||..+|.+ +.++++. .++++++|.+-. .... ..+.+ ..
T Consensus 135 ~~~~~d~~~l~~~~~~-----~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~-~~~~~~~~ 208 (364)
T PRK04781 135 DGFHADVPAIVAAALA-----SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVP-SAVGLLAR 208 (364)
T ss_pred cCCCcCHHHHHHHHhc-----cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCc-chHHHHhh
Confidence 234678887655432 1358999999999999999998 8777654 478899999732 2210 11111 11
Q ss_pred CCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
.+-=+++.||-|.||.+---+|+++..++.++.+.
T Consensus 209 ~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~ 243 (364)
T PRK04781 209 YDNLAVLRTLSKAHALAAARIGSLIANAELIAVLR 243 (364)
T ss_pred CCCEEEEecChhhcccccceeeeeeCCHHHHHHHH
Confidence 22237889999999963234688888777665443
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=141.19 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcC-----CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 173 SAMKKRIMDFLN-----ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 173 ~~~R~~ia~~l~-----a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+.|+.|+++++ ++++ .|++|+|+++|+.+++..+ .++||+|++. ..|. .....++..|+++..++
T Consensus 76 ~~lr~aia~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~v~i~~P~y~-----~~~~~~~~~g~~v~~~~ 147 (401)
T TIGR01264 76 LSAREAIASYYHNPDGPIEAD--DVVLCSGCSHAIEMCIAAL-ANAGQNILVPRPGFP-----LYETLAESMGIEVKLYN 147 (401)
T ss_pred HHHHHHHHHHHhhcCCCCCHH--HEEECcChHHHHHHHHHHh-CCCCCEEEEeCCCCh-----hHHHHHHHcCCEEEEee
Confidence 367888999987 5555 6999999999999999998 5789997654 3333 22455678899999998
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
++.. +..++++++++.+.++ ++++++++.+|+||..++ ++ |+++|+++|+++++|.+-.. +..
T Consensus 148 ~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~-- 219 (401)
T TIGR01264 148 LLPDKSWEIDLKQLESLIDEK------TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGAT-- 219 (401)
T ss_pred cCCccCCCCCHHHHHHHhccC------ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcc--
Confidence 7532 4578999998887653 488999999999999997 55 77888999999999987431 111
Q ss_pred CCCCCCCCC---cEEEEccccccCCCCCceEEEEEeC
Q 006746 318 SFGLSLVRP---DFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 318 ~ldls~~~~---Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
...+..... -+++.||-|.||.+--.+|++++.+
T Consensus 220 ~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~ 256 (401)
T TIGR01264 220 FEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHD 256 (401)
T ss_pred cccHHHcCCCCcEEEEccCcccCCCccceEEEEEecC
Confidence 111111112 3788999999886323368887754
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-12 Score=138.13 Aligned_cols=337 Identities=9% Similarity=0.083 Sum_probs=202.0
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||.++. |--.+.+++++.+.+..... .+. . + ..+.++.+++.++
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~------------------~~~---~-~---~~~~~~~~~~~l~ 83 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTL------------------TSR---A-F---YNDVLGLAEKYIT 83 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccc------------------ccc---c-c---cCHHHHHHHHHHH
Confidence 56789998753 22477788887654322100 010 0 0 1246678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC--------C-CCCCeEE-EeccccchhhHHHHHHHHhcCCEEE--EEecc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP--------F-MSVKNLL-TVYDYESEAVEAMIRTSEKRGARVM--SAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~--------~-~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~--~v~~~ 248 (632)
++++.+ .++|++++|+|+..++.... + ..+++|+ ....+|......|. .. .+.... ..+..
T Consensus 84 ~~~~~~----~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~-~~--~~~~~~~~~~~~~ 156 (400)
T PTZ00125 84 DLFGYD----KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACS-AS--TDPKCYNNFGPFV 156 (400)
T ss_pred hCCCCC----EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHh-hc--CCcchhccCCCCC
Confidence 988753 68899999999888776541 1 1234555 55677763333322 11 111110 00100
Q ss_pred C---CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc-CCCC--CC
Q 006746 249 W---PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL-GPKD--MD 317 (632)
Q Consensus 249 ~---~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~g~~--m~ 317 (632)
. .-...|+++|++.+.. +++++|++..+.|.||..+| ++ |.++|+++|+++++|.++. +|.. +.
T Consensus 157 ~~~~~~~~~d~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~ 231 (400)
T PTZ00125 157 PGFELVDYNDVEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL 231 (400)
T ss_pred CCceEeCCCCHHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh
Confidence 0 0001278999988862 24688988888999999998 88 9999999999999999875 3321 11
Q ss_pred CCCCCCCCCcEEEEccccccCCCCC-ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPS-GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~-G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
..+.....||++++| |.++. +. .+|+++++++.++.+.....+.+ |
T Consensus 232 ~~~~~~~~pd~~~~s--K~l~~-g~~~ig~v~~~~~~~~~~~~~~~~~t----------~-------------------- 278 (400)
T PTZ00125 232 AHDHEGVKPDIVLLG--KALSG-GLYPISAVLANDDVMLVIKPGEHGST----------Y-------------------- 278 (400)
T ss_pred HHHhcCCCCCEEEEc--ccccC-CCcCcEEEEEcHHHHhhccCCCCCCC----------C--------------------
Confidence 233344578998877 97763 32 58999999887765543111100 0
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
.+. ++ ...+. .++|+.+.+.+ +.+|.+.+.++
T Consensus 279 ---~~~-~~-----------------~~~aa------------------------~~~l~~i~~~~---~~~~~~~~~~~ 310 (400)
T PTZ00125 279 ---GGN-PL-----------------ACAVA------------------------VEALEVLKEEK---LAENAQRLGEV 310 (400)
T ss_pred ---CcC-HH-----------------HHHHH------------------------HHHHHHHHhcC---HHHHHHHHHHH
Confidence 000 00 00111 26677776544 45677777888
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~ 556 (632)
+++.|.++... .+.+.-. ...|.++.+.+.+.++ .....+.+.+.++||.+..+
T Consensus 311 l~~~l~~l~~~----~~~~~~~-----~~~g~~~~v~~~~~~~--~~~~~~~~~l~~~Gv~v~~~--------------- 364 (400)
T PTZ00125 311 FRDGLKELLKK----SPWVKEI-----RGKGLLNAIVFDHSDG--VNAWDLCLKLKENGLLAKPT--------------- 364 (400)
T ss_pred HHHHHHHHHhc----CCCeEEE-----ecccEEEEEEEccCcc--hHHHHHHHHHHHCCeEEeec---------------
Confidence 88888775211 1222111 1246666666653222 23334444444678887521
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+..+||+++++..+.+||+++++.|.++|++
T Consensus 365 -------------------------~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~ 395 (400)
T PTZ00125 365 -------------------------HDNIIRFAPPLVITKEQLDQALEIIKKVLKS 395 (400)
T ss_pred -------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 2358999999999999999999999998764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-12 Score=141.77 Aligned_cols=174 Identities=10% Similarity=0.084 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
++.+.+.+.+++.+|.+-+...|++|+|+++|+.+++.++ +.+||.|++.. .|.. .. . .....|+++..++.+
T Consensus 74 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~-y~-~---~~~~~~~~~~~v~~~ 147 (402)
T PRK06107 74 ALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMAT-LEAGDEVIIPAPYWVS-YP-D---MVLANDGTPVIVACP 147 (402)
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh-cCCCCEEEEecCCCcC-HH-H---HHHHcCCEEEEecCC
Confidence 4555666666667676422337999999999999999887 78999977543 3332 22 2 224457777777775
Q ss_pred C-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhC-CcEEEEeccccC----CC---C
Q 006746 249 W-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQEN-DWHILIDACALG----PK---D 315 (632)
Q Consensus 249 ~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~-g~~vlvDaaq~~----g~---~ 315 (632)
. .+..++.+++++++.++ ++++.++..+|+||..+|.+ |+++|+++ |+++++|-+-.- +. .
T Consensus 148 ~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~ 221 (402)
T PRK06107 148 EEQGFKLTPEALEAAITPR------TRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPH 221 (402)
T ss_pred cccCCCCCHHHHHhhcCcC------ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCC
Confidence 2 23457889999887643 47888899999999999875 56778897 999999975321 11 0
Q ss_pred CCCCCCCCCCCcEEEEccccccCCCCCce--EEEEEeCCCcccc
Q 006746 316 MDSFGLSLVRPDFLICSFYQIFGENPSGF--GCLFVKKSTVPIL 357 (632)
Q Consensus 316 m~~ldls~~~~Df~~~S~hK~~G~~P~G~--G~L~Vr~~~~~~L 357 (632)
+..++-....--+++.|+.|.||. +|+ |+++..++.++.+
T Consensus 222 ~~~~~~~~~~~vi~~~S~SK~~~~--pGlRiG~~~~~~~~~~~~ 263 (402)
T PRK06107 222 LLAAAPELRDRVLVTNGVSKTYAM--TGWRIGYAAGPADLIAAI 263 (402)
T ss_pred HHHhCcCccCCEEEEeccchhhcC--cccceeeeecCHHHHHHH
Confidence 111111111235788899999984 365 8888776655443
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=141.77 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHcCCCCCC-ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 170 GLESAMKKRIMDFLNISEND-YGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~e-y~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.+.+.+.+.++++.+.+. ..|++|+|+|+|+.+++.++ ..+||+|++.. .|.+ . ...++..|++++.++.
T Consensus 71 ~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~Vli~~p~y~~-~----~~~~~~~g~~~~~~~~ 144 (386)
T PRK09082 71 ALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILAL-VRPGDEVIVFDPSYDS-Y----APAIELAGGRAVRVAL 144 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchh-h----HHHHHHcCCEEEEEec
Confidence 45566677777778876433 26999999999999999998 68999977554 4443 2 3344567999999999
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CC-CCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PK-DMDS 318 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~-~m~~ 318 (632)
+..+..++++++++++.++ +++++++..+|+||..++ ++ |+++|+++|+++++|.+... +. ....
T Consensus 145 ~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~ 218 (386)
T PRK09082 145 QPPDFRVDWQRFAAAISPR------TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASV 218 (386)
T ss_pred CcccccCCHHHHHHhcCcc------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCCh
Confidence 7556678999999988653 488999999999999865 55 68899999999999997421 11 0011
Q ss_pred CCCC-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 319 FGLS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 319 ldls-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
..+. ..+-.+++.|+.|.||. | | +|+++..++.++.+
T Consensus 219 ~~~~~~~~~~i~~~S~SK~~~~-~-G~RiG~iv~~~~l~~~~ 258 (386)
T PRK09082 219 LRHPELRERAFVVSSFGKTYHV-T-GWKVGYCVAPAALSAEF 258 (386)
T ss_pred hhCcCccCcEEEEeechhhccc-h-hhhhhhhhCCHHHHHHH
Confidence 1121 12456899999999985 3 6 68888766554433
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-12 Score=138.64 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=118.4
Q ss_pred HHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ +++++ .|++|+|+++|+.+++.++ ..+||+|++.. .|+. ....++..|++++.++
T Consensus 70 ~lr~~ia~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~-----~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 70 ELIEEIIKYYSKNYDLSFKRN--EIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTP-----YKDQIEMVGGKPIILE 141 (384)
T ss_pred HHHHHHHHHHHHHhCCCCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcc-----hHHHHHHcCCEEEEec
Confidence 5677777766 35554 7999999999999999998 78999987643 3332 2344566799988887
Q ss_pred ccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC---CCCCCC
Q 006746 247 FSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG---PKDMDS 318 (632)
Q Consensus 247 ~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~---g~~m~~ 318 (632)
... .+..+++++|++++.++ ++++.++..+|+||..++. + |+++|+++|+++++|-+-.. .....+
T Consensus 142 ~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~ 215 (384)
T PRK06348 142 TYEEDGFQINVKKLEALITSK------TKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVP 215 (384)
T ss_pred CCcCcCCcCCHHHHHHhhCcC------ccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccc
Confidence 642 33458999999988653 4788888899999999984 4 67788999999999987432 111011
Q ss_pred -CCCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 319 -FGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 319 -ldls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
..+.. .+-.+++.|+-|.+|.+---+|+++..+..++
T Consensus 216 ~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~ 254 (384)
T PRK06348 216 MATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIE 254 (384)
T ss_pred hhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHH
Confidence 11111 22358888999998853234688887665543
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=140.81 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=121.4
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+.......++.+++++++.|++. .++++|+++|+.++.. + +++||+|++. ..|++ ....+...+++.|+++
T Consensus 46 y~r~~~pt~~~le~~la~l~g~~~----~~~~~sG~~ai~~~~~-l-l~~Gd~Vl~~~~~y~~-t~~~~~~~~~~~G~~v 118 (366)
T PRK08247 46 YSRTGNPTRGVLEQAIADLEGGDQ----GFACSSGMAAIQLVMS-L-FRSGDELIVSSDLYGG-TYRLFEEHWKKWNVRF 118 (366)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHH-H-hCCCCEEEEecCCcCc-HHHHHHHHhhccCceE
Confidence 333333456789999999999963 3667788999998764 4 5789997754 45654 3333455667799999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++. .|+++++++++++ ++++.+...+|++|...+++ |+++|+++|+++++|.+...+....++
T Consensus 119 ~~vd~------~d~~~l~~~i~~~------tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-- 184 (366)
T PRK08247 119 VYVNT------ASLKAIEQAITPN------TKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-- 184 (366)
T ss_pred EEECC------CCHHHHHHhcccC------ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch--
Confidence 88865 3778899888764 48999999999999999999 999999999999999997655421233
Q ss_pred CCCCCcEEEEccccccCCCCCc-eEEEEE
Q 006746 322 SLVRPDFLICSFYQIFGENPSG-FGCLFV 349 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G-~G~L~V 349 (632)
.++.|+++.|+.|++|. +.+ .|.+++
T Consensus 185 -~~g~di~i~S~sK~~~g-~~d~~~G~iv 211 (366)
T PRK08247 185 -EEGADIVIHSATKYLGG-HNDVLAGLVV 211 (366)
T ss_pred -hcCCcEEEeecceeccC-CCceeeeEEe
Confidence 35789999999998773 444 344444
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-12 Score=140.99 Aligned_cols=163 Identities=11% Similarity=0.170 Sum_probs=118.0
Q ss_pred HHHHHHHHHHcC------------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcC
Q 006746 173 SAMKKRIMDFLN------------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 173 ~~~R~~ia~~l~------------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G 239 (632)
.+.|+.|+++++ ++++ .|++|+|+++|+.+++..+ ..+||+|++.. .|+. ....++..|
T Consensus 78 ~~Lr~aia~~~~~~~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~-----~~~~~~~~g 149 (412)
T PTZ00433 78 PEAREAVATYWRNSFVHKESLKSTIKKD--NVVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPH-----YETVCKAYG 149 (412)
T ss_pred HHHHHHHHHHHHhhccccccccCCCChh--hEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCccc-----HHHHHHHcC
Confidence 367888888876 4444 7999999999999999998 68999977543 4442 234567789
Q ss_pred CEEEEEeccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC--
Q 006746 240 ARVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-- 312 (632)
Q Consensus 240 ~~v~~v~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-- 312 (632)
+++..++.+. .+..+++++|++.+.++ ++++++++.+|+||..++.+ |+++|+++|+++++|.+..-
T Consensus 150 ~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 223 (412)
T PTZ00433 150 IEMRFYNCRPEKDWEADLDEIRRLVDDR------TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV 223 (412)
T ss_pred CEEEEEecCccccCcCCHHHHHHHhccC------ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence 9999999862 23468999998887653 48889999999999999854 57888999999999997431
Q ss_pred --CCCCCC-CCCCCCCCcEEEEccccccCCCCCceEEEEE
Q 006746 313 --PKDMDS-FGLSLVRPDFLICSFYQIFGENPSGFGCLFV 349 (632)
Q Consensus 313 --g~~m~~-ldls~~~~Df~~~S~hK~~G~~P~G~G~L~V 349 (632)
+....+ ..+.....=+++.|+-|.||.+-..+|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~ 263 (412)
T PTZ00433 224 FNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLL 263 (412)
T ss_pred cCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEE
Confidence 110001 1121111236788999999864345688776
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-12 Score=135.69 Aligned_cols=304 Identities=15% Similarity=0.163 Sum_probs=197.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhc
Q 006746 159 KTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKR 238 (632)
Q Consensus 159 ~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~ 238 (632)
.++..+|. .++..+..+++++|+|++. .++|+++-..-+- +..++ .+++|-|+.+...|...+.+ ++..
T Consensus 75 gsR~i~G~--~~~h~~LE~~lA~f~g~e~---al~f~SGy~AN~~-~i~~l-~~~~dli~~D~lnHASiidG----~rls 143 (388)
T COG0156 75 GSRLISGT--SDLHVELEEELADFLGAEA---ALLFSSGFVANLG-LLSAL-LKKGDLIFSDELNHASIIDG----IRLS 143 (388)
T ss_pred CcCcccCC--cHHHHHHHHHHHHHhCCCc---EEEEcccchhHHH-HHHHh-cCCCcEEEEechhhhhHHHH----HHhC
Confidence 44444554 3677789999999999973 6888866655444 44445 35677777776555534444 4556
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC--
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-- 315 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-- 315 (632)
+++++...- .|+++|++.|.+......+.+++++..+-++.|..-||. |+++++++|.+++||=|+++|.-
T Consensus 144 ~a~~~~f~H------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~ 217 (388)
T COG0156 144 RAEVRRFKH------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGP 217 (388)
T ss_pred CCcEEEecC------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCC
Confidence 788877654 478999999987321111568999999999999999999 99999999999999999988641
Q ss_pred -----CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 316 -----MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 316 -----m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
...+++....+|+++.++-|.|| +.|..+.-. .+.+-|...-. .+
T Consensus 218 ~GrG~~e~~g~~~~~vdi~~gTlsKAlG----s~Gg~v~g~~~~~d~L~~~ar-----------~~-------------- 268 (388)
T COG0156 218 NGRGLAEHFGLEPEEVDIIVGTLGKALG----SSGGYIAGSAALIDYLRNRAR-----------PF-------------- 268 (388)
T ss_pred CCccHHHHhCCCCccceEEEEEchhhhc----ccCceeeCcHHHHHHHHHhCC-----------ce--------------
Confidence 11345555567999999999999 455555433 33332321100 00
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 469 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r 469 (632)
.| -.+.+|.. ..+. .++|+++.+ -....+|
T Consensus 269 ----if---StalpP~~-----------------aaa~------------------------~~al~~l~~--~~~~r~~ 298 (388)
T COG0156 269 ----IF---STALPPAV-----------------AAAA------------------------LAALRILEE--GPERRER 298 (388)
T ss_pred ----ec---cCCCCHHH-----------------HHHH------------------------HHHHHHHHh--CHHHHHH
Confidence 00 00111110 0111 167777764 2566788
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHH
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~ 549 (632)
++.++.+++..+..+ |.+. .+ ...+|+.+.+.|.. ...+.-..++++ ||.++... .|
T Consensus 299 L~~~~~~~~~~~~~~------~~~~----~~----s~s~I~pv~~gd~~---~a~~~s~~l~~~-Gi~v~~i~--~P--- 355 (388)
T COG0156 299 LQELAAFFRSLLKAL------GLVL----LP----SESPIIPVILGDEE---RALEASRALLEE-GIYVSAIR--PP--- 355 (388)
T ss_pred HHHHHHHHHHHHHhc------CCcc----CC----CCCCeeeeEeCCHH---HHHHHHHHHHHC-CeeEeeec--CC---
Confidence 889999998666665 3221 22 35788888887631 112222344554 98886431 11
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
. -+.+...+|+++...+|.+||+++++.+.+.
T Consensus 356 --------------------T--------Vp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 356 --------------------T--------VPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred --------------------C--------CCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 0 1234568999999999999999999998764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-12 Score=140.50 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=119.5
Q ss_pred HHHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|+++++ ++++ .|++|+|+++|+.+++.++ .++||+|++. ..|+. + ...++..|++++.+
T Consensus 111 ~~lR~aiA~~~~~~~~~~~~~~--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P~y~~--y---~~~~~~~g~~~~~~ 182 (462)
T PLN02187 111 LPARRAVADYMNRDLPHKLTPE--DIFLTAGCNQGIEIVFESL-ARPNANILLPRPGFPH--Y---DARAAYSGLEVRKF 182 (462)
T ss_pred HHHHHHHHHHHHHhcCCCCCcc--cEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCCcc--H---HHHHHHcCCEEEEE
Confidence 468888888874 5655 7999999999999999999 7899997754 45553 2 33467789999999
Q ss_pred eccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCC
Q 006746 246 EFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDM 316 (632)
Q Consensus 246 ~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m 316 (632)
+... .+..+|+++|+++++++ ++++++++.+|+||..++ ++ |+++|+++|+++|+|.+-.- +...
T Consensus 183 ~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~ 256 (462)
T PLN02187 183 DLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPF 256 (462)
T ss_pred eCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence 8742 34578999999887654 488999999999999998 55 77888999999999996321 2100
Q ss_pred CCC-CCCCCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 317 DSF-GLSLVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 317 ~~l-dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
.++ .+.....=+++.|+-|.|+.+---+|++++.
T Consensus 257 ~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~ 291 (462)
T PLN02187 257 VSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALN 291 (462)
T ss_pred eeHHHhccCCcEEEEecchhhcCCccceeEEEEec
Confidence 111 1111112367789999988643446887763
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=140.05 Aligned_cols=164 Identities=11% Similarity=0.084 Sum_probs=117.8
Q ss_pred HHHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.++++++ ++++ +|++|+|+++|+.+++..+ .++||+|++. ..|+. + ...++..|++++.+
T Consensus 76 ~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~--~---~~~~~~~g~~~~~i 147 (409)
T PLN02656 76 PQARRAIAEYLSRDLPYKLSLD--DVFITSGCTQAIDVALSML-ARPGANILLPRPGFPI--Y---ELCAAFRHLEVRYV 147 (409)
T ss_pred HHHHHHHHHHHHHhcCCCCCcc--cEEEeCChHHHHHHHHHHH-hCCCCeEEEeCCCCCc--H---HHHHHHcCCEEEEE
Confidence 367888888774 4444 7999999999999999998 6899997754 45542 2 23455689999999
Q ss_pred eccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCC
Q 006746 246 EFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDM 316 (632)
Q Consensus 246 ~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m 316 (632)
+.+.. +..++.++++++++++ ++++++++.+|+||..++ ++ |+++|+++|+++++|.+-.- +...
T Consensus 148 ~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 221 (409)
T PLN02656 148 DLLPEKGWEVDLDAVEALADQN------TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPF 221 (409)
T ss_pred eCCCcCCCCCCHHHHHHHhccC------ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCc
Confidence 98533 3468999999888654 378899999999999985 55 78889999999999997431 2110
Q ss_pred CCC-CCCCCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 317 DSF-GLSLVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 317 ~~l-dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
.++ .+.....=+++.||-|.|+.+---+|+++..
T Consensus 222 ~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~ 256 (409)
T PLN02656 222 VPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTT 256 (409)
T ss_pred ccHHHhcccCcEEEEcccchhccCcceeEEEEEEe
Confidence 111 1111223478899999888643456888764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=137.03 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=119.7
Q ss_pred HHHHHHHHHHcCC------CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFLNI------SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l~a------~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|+++++. +++ +|++|+|+|+|+.+++..+ ..+||+|++. ..|+. + ...+...|++++.+
T Consensus 97 ~~lr~aia~~~~~~~~~~~~~~--~v~it~G~~~al~l~~~~l-~~~Gd~Vlv~~P~y~~--y---~~~~~~~g~~~~~~ 168 (430)
T PLN00145 97 LPARRAIAEYLSRDLPYELSTD--DIYLTAGCAQAIEIIMSVL-AQPGANILLPRPGYPL--Y---EARAVFSGLEVRHF 168 (430)
T ss_pred HHHHHHHHHHHhhccCCCCChh--hEEEeCCHHHHHHHHHHHh-cCCCCEEEEcCCCCcc--H---HHHHHHcCCEEEEe
Confidence 4788888888853 444 7999999999999999999 6899997754 35543 1 23456689999998
Q ss_pred eccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCC
Q 006746 246 EFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDM 316 (632)
Q Consensus 246 ~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m 316 (632)
++.. .+..+|++++++++++++ +++++.+.+|+||..+| ++ |+++|+++|+++++|.+-.. +...
T Consensus 169 ~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~ 242 (430)
T PLN00145 169 DLLPERGWEVDLEGVEALADENT------VAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPF 242 (430)
T ss_pred eCCcccCCcCCHHHHHHHhCcCc------eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCc
Confidence 8642 345789999998887654 88999999999999999 56 77889999999999986321 1100
Q ss_pred CCC-CCCCCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 317 DSF-GLSLVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 317 ~~l-dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
.++ .++....=+++.|+-|.|+.+---+|++++.
T Consensus 243 ~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~ 277 (430)
T PLN00145 243 VPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATC 277 (430)
T ss_pred cchhhhcccCcEEEEeccccccCCCCeeEEEEEEe
Confidence 121 1222234488899999888643446777763
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-12 Score=138.27 Aligned_cols=169 Identities=11% Similarity=0.143 Sum_probs=122.2
Q ss_pred HHHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|++++ +++++ .|++|+|+++++.+++..+ .++||.|++. ..|+. ....++..|+++..+
T Consensus 68 ~~lr~aia~~~~~~~~~~~~~~--~I~it~G~~~~l~~~~~~~-~~~gd~v~v~~P~y~~-----~~~~~~~~g~~~~~~ 139 (368)
T PRK03317 68 VALRADLAAYLTAQTGVGLTVE--NVWAANGSNEILQQLLQAF-GGPGRTALGFVPSYSM-----HPIIARGTHTEWVEG 139 (368)
T ss_pred HHHHHHHHHHhhhhccCCCChh--hEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCChHH-----HHHHHHhcCCeeEEc
Confidence 46888888888 45655 7999999999999999998 5889997653 34432 234456788888887
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC-CCC--CCCCCC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG-PKD--MDSFGL 321 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~-g~~--m~~ldl 321 (632)
+.+ ++..++++++++++.+. +++++.++...|+||..+|.+ +.++++..++++++|-+... ..+ ...+.+
T Consensus 140 ~~~-~~~~~d~~~l~~~~~~~-----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~ 213 (368)
T PRK03317 140 PRA-ADFTLDVDAAVAAIAEH-----RPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTL 213 (368)
T ss_pred ccC-CCCCCCHHHHHHHHhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHH
Confidence 765 45568999999988742 247888889999999999999 99999888999999997642 110 011111
Q ss_pred CCCCCc-EEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 322 SLVRPD-FLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 322 s~~~~D-f~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
....++ +++.|+-|.+|. | | +|+++.+++.++.+
T Consensus 214 ~~~~~~~i~~~SfSK~~g~-~-GlRiG~~~~~~~~~~~l 250 (368)
T PRK03317 214 LPEYPRLVVSRTMSKAFAF-A-GGRLGYLAAAPAVVDAL 250 (368)
T ss_pred HHhCCCEEEEEechhhhcc-c-hhhhhhhhCCHHHHHHH
Confidence 111234 567799999985 3 5 58888776665544
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-12 Score=135.49 Aligned_cols=167 Identities=10% Similarity=0.157 Sum_probs=119.9
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.|+++++++++ +|++|+|+++++.++...+ .++||.|++.. .|+. . ...++..|++++.+|.+ .+
T Consensus 70 ~~Lr~~ia~~~~~~~~--~I~it~G~~~~l~~~~~~~-~~~gd~vlv~~p~y~~--~---~~~~~~~g~~~~~vp~~-~~ 140 (369)
T PRK08153 70 HDLRHALAAHHGVAPE--NIMVGEGIDGLLGLIVRLY-VEPGDPVVTSLGAYPT--F---NYHVAGFGGRLVTVPYR-DD 140 (369)
T ss_pred HHHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCcchH--H---HHHHHHcCCeEEEeeCC-CC
Confidence 5899999999999876 7999999999999999987 68899987643 4543 1 22345679999999985 33
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEeccccC-CCC--CCCCCCCCCC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACALG-PKD--MDSFGLSLVR 325 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~-g~~--m~~ldls~~~ 325 (632)
.++.+++.+.+... +++++.++..+|+||..+|.+ +.++++. .|+++|+|-+-.. ..+ ..+++ ...+
T Consensus 141 -~~~~~~l~~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~-~~~~ 213 (369)
T PRK08153 141 -REDLDALLDAARRE-----NAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPID-TDDP 213 (369)
T ss_pred -CCCHHHHHHHhccc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhh-hcCC
Confidence 47888887666432 358898999999999999998 7666643 3889999987321 110 11221 1122
Q ss_pred CcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 326 PDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
--+++.||-|.||.+ | +|+++..++.++.+
T Consensus 214 ~~i~~~SfSK~~g~~--GlRiG~~v~~~~~~~~l 245 (369)
T PRK08153 214 NVIRMRTFSKAYGLA--GARVGYAIGAPGTIKAF 245 (369)
T ss_pred CEEEEecchHhccCc--chheeeeecCHHHHHHH
Confidence 247889999999853 6 58888776655433
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=139.12 Aligned_cols=297 Identities=17% Similarity=0.150 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEE
Q 006746 172 ESAMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 172 ~~~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
..+.|+.|+++++ .+++ ..|++|+++.+++.++...+...+|+.|++.. .|+ .+.+.++..|++++.
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~-~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~-----~~~~~~~~~g~~~~~ 119 (363)
T PF00155_consen 46 YPELREAIADFLGRRYGVPVDPE-ANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYP-----SYIEAARLLGAEVIP 119 (363)
T ss_dssp HHHHHHHHHHHHHHHHTHHTTGG-EGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSST-----HHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHhhhccCcccccc-eEEEEecccccchhhhhhcccccccccceecCCccc-----cccccccccCceeee
Confidence 3589999999999 5543 36999999999999988887556889877654 443 234567788999999
Q ss_pred Eecc-CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHH---HhhCCcEEEEeccccCCCCCC--
Q 006746 245 AEFS-WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRI---AQENDWHILIDACALGPKDMD-- 317 (632)
Q Consensus 245 v~~~-~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~---a~~~g~~vlvDaaq~~g~~m~-- 317 (632)
++++ ..+..+++++|++.+++...+..+++++.++...|+||..+|.+ +.++ |+++|+++++|-+...... .
T Consensus 120 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~-~~~ 198 (363)
T PF00155_consen 120 VPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIF-GDP 198 (363)
T ss_dssp EEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBS-SSS
T ss_pred ccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceecccc-CCC
Confidence 9865 24567899999999987321111468999999999999999988 7666 9999999999998665221 1
Q ss_pred -----CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 318 -----SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 318 -----~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
...+......+++.|+-|.||.+-..+|++++.++.++.+..... .|
T Consensus 199 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~------------~~---------------- 250 (363)
T PF00155_consen 199 DFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQR------------SG---------------- 250 (363)
T ss_dssp HTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHH------------HT----------------
T ss_pred ccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhhccc------------cc----------------
Confidence 112222222599999999999521238999997766544432100 00
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh--CHHHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRG 470 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~--Gl~~I~~r~ 470 (632)
.. ..+ .-..+. ..+...... =++.+.++.
T Consensus 251 ---------~~--~~~--------------~~~~~~------------------------~~l~~~~~~~~~~~~~~~~l 281 (363)
T PF00155_consen 251 ---------LS--SSP--------------MQAAAA------------------------AALSDPELVEKWLEELRERL 281 (363)
T ss_dssp ---------TS--SHH--------------HHHHHH------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cc--cch--------------hhHHHH------------------------HhhhcccccccccccchhhH
Confidence 00 000 000000 222222111 246677778
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHh
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~ 550 (632)
+...+++.+.|.++ | +.++++ .++++.+...+.. -..++.++|+++.||.+..|...
T Consensus 282 ~~~~~~l~~~L~~~------~---~~~~~~-----~~~~~~~~~~~~~---~~~~l~~~L~~~~gi~v~pg~~~------ 338 (363)
T PF00155_consen 282 RENRDLLREALEEI------G---ITVLPP-----EAGFFLWVRLDPN---DAEELAQELLEEYGILVRPGSYF------ 338 (363)
T ss_dssp HHHHHHHHHHHHHT------T---SEEEHH-----SBSSEEEEEESHH---HHHHHHHHHHHHHTEEEEEGGGG------
T ss_pred HHHHHHHHHHHHHh------h---hheeec-----cCccEEEEEcccc---hHHHHHHHHHHhCCEEEEecCCC------
Confidence 88888888888876 3 445544 2666666554411 12456677777779999866210
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHH
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 606 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l 606 (632)
.. .+.||+|+ -..+.|+++++++.|
T Consensus 339 -----------------------------~~-~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 339 -----------------------------GV-PGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp -----------------------------TS-TTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred -----------------------------CC-CCEEEEEe-ccCCHHHHHHHHhhC
Confidence 11 56999999 889999999999865
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-12 Score=135.58 Aligned_cols=216 Identities=18% Similarity=0.159 Sum_probs=143.0
Q ss_pred ceEeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~-~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
.-|+.|-..++-+.+++..+.. .++. |.... ..+-...+++.++-+.+++++|.+.
T Consensus 40 P~~~~~~~~~~~~~~i~~~~l~~~~n~----------------------n~~~~-~~~P~~~~~E~~vi~~l~~l~g~~~ 96 (373)
T PF00282_consen 40 PRFFGFVPGGPSPASILADLLASALNQ----------------------NGFTW-EASPAATEIEREVIRWLADLFGLPE 96 (373)
T ss_dssp TTBESSSHT--CHHHHHHHHHHHHHT-----------------------BTTST-TTSHHHHHHHHHHHHHHHHHTTGSG
T ss_pred hhHhhhccCCccHHHHHHHHHHhhhcc----------------------ccccc-ccccccccchHHHHHHHHHHhCCcc
Confidence 4588888888888888776432 2211 11000 0111246788899999999999983
Q ss_pred C-----CccEEEeCCHHHHHHHHHhhCC-----------CCCCCe--EEEeccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 188 N-----DYGMVFTANRTSAFKLLAESYP-----------FMSVKN--LLTVYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 188 ~-----ey~vvft~naT~al~lv~~sl~-----------~~~gd~--ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
+ +-.=+||+++|+++-....+.. .....+ |+++.+-|. .+...+.-.|+.++.||.+
T Consensus 97 ~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~----S~~Kaa~~lGlg~~~I~~~- 171 (373)
T PF00282_consen 97 SFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHY----SIEKAARILGLGVRKIPTD- 171 (373)
T ss_dssp GTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-T----HHHHHHHHTTSEEEEE-BB-
T ss_pred cccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccccc----HHHHhcceeeeEEEEecCC-
Confidence 2 2357899999999864432211 010223 344443333 2245677789999999999
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC----CCCCCCCCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK----DMDSFGLSLV 324 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~----~m~~ldls~~ 324 (632)
++++++.++|+++|.+.......+-+|+.+.-++.+|..=|++ |.++|++++++++||||-.+.. .+..+....-
T Consensus 172 ~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~ 251 (373)
T PF00282_consen 172 EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIE 251 (373)
T ss_dssp TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGG
T ss_pred cchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccc
Confidence 6889999999999976432222345789999999999999999 9999999999999999754411 1223333445
Q ss_pred CCcEEEEccccccCCCCCceEEEEEeCCC
Q 006746 325 RPDFLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
++|-+++++|||++. |.++|++++|+..
T Consensus 252 ~adSit~d~HK~l~~-P~~~~~~l~r~~~ 279 (373)
T PF00282_consen 252 RADSITIDPHKWLGV-PYGCGVLLVRDKS 279 (373)
T ss_dssp GESEEEEETTTTTS--SSS-EEEEESSGG
T ss_pred cccccccchhhhhcC-CccceeEEeeccc
Confidence 789999999999998 9999999999875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=140.93 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+.++.+.+|+++|++. ....|+++|.++..++.++ .++||+||+.-..|-+++..|. -.|+++++++..
T Consensus 65 ~G~I~eAe~~aA~~fGAd~---t~flvnGsT~g~~a~i~a~-~~~gd~VLv~RN~HkSv~~ali----l~ga~Pvyi~p~ 136 (417)
T PF01276_consen 65 EGIIKEAEELAARAFGADK---TFFLVNGSTSGNQAMIMAL-CRPGDKVLVDRNCHKSVYNALI----LSGAIPVYIPPE 136 (417)
T ss_dssp BTHHHHHHHHHHHHHTESE---EEEESSHHHHHHHHHHHHH-TTTTCEEEEETT--HHHHHHHH----HHTEEEEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCe---EEEEecCchHHHHHHHHHh-cCCCCEEEEcCCcHHHHHHHHH----HcCCeEEEecCC
Confidence 3678899999999999974 5778899999999999888 7899999887665543555543 469999999764
Q ss_pred CCc----cccCH-----HHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC--CCCC
Q 006746 249 WPR----LRINS-----EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG--PKDM 316 (632)
Q Consensus 249 ~~~----~~i~~-----~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~--g~~m 316 (632)
.+. +.++. ++|+++|.+... .+.+++++++..+ .-|+.++++ |+++|+++|+.++||.|+.+ +..-
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~-~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~ 214 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPD-AKAPRLVVLTSPT-YYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHP 214 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTT-CHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSG
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCcc-ccCceEEEEeCCC-CCeEEECHHHHHHHhcccCCEEEEEccccccccCCC
Confidence 221 23455 999999987532 1236678877764 689999999 99999999999999998765 2211
Q ss_pred CCCCCCCCCCc-------EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 317 DSFGLSLVRPD-------FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 317 ~~ldls~~~~D-------f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
.+-+-...++| +++-|.||.++. -+-.+.|.++.+.. +...
T Consensus 215 lp~~a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~--v~~~----------------------------- 262 (417)
T PF01276_consen 215 LPRSALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRI--VDHE----------------------------- 262 (417)
T ss_dssp GGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCC--TTHH-----------------------------
T ss_pred CccchhhccCccccccceeeeechhhcccc-cccceEEEecCCCc--ccHH-----------------------------
Confidence 23334456889 999999997776 78899999998752 1000
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHH-HhhCHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV-DSLGLTMISR 468 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~-~~~Gl~~I~~ 468 (632)
++.+.. ...+...|..+.+.+|+ .|.+++ ...| ....+
T Consensus 263 ----~~~~~l------------~~~~TTSPSY~lmASlD------------------------~a~~~m~~~~G-~~l~~ 301 (417)
T PF01276_consen 263 ----RVNEAL------------SMHQTTSPSYPLMASLD------------------------VARAQMEEEEG-RELLE 301 (417)
T ss_dssp ----HHHHHH------------HHHS-SS--HHHHHHHH------------------------HHHHHHSHHHH-HHHHH
T ss_pred ----HHHHHH------------HHHcCCChHHHHHHHHH------------------------HHHHHHhhhhh-HHHHH
Confidence 000000 00012235556677776 676676 4444 45556
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCC-------------------------CcEEEEEEc--cCCCC-
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR-------------------------GPALAFNVF--DWKRE- 520 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~r-------------------------g~ivaFnv~--~~~G~- 520 (632)
+...++..++++|.+++ ..+.+++++|+.-... ..=|+++++ |.+|+
T Consensus 302 ~~i~~a~~~R~~i~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~ 376 (417)
T PF01276_consen 302 EAIELAEEFRKKINRLN-----DIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGEL 376 (417)
T ss_dssp HHHHHHHHHHHHHHHHC-----CT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB
T ss_pred HHHHHHHHHHHHHHhcC-----CCceEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcc
Confidence 67777888888885542 1356777777521110 122455553 23433
Q ss_pred ---ccCHHHHHHHHHhCCcEEc
Q 006746 521 ---KIEPVLVQKLADRENISLS 539 (632)
Q Consensus 521 ---~i~~~~V~kla~~~gI~lr 539 (632)
-|+..+|.+.+.++||.+-
T Consensus 377 ~~~Gi~g~~~~~~L~~~~I~~E 398 (417)
T PF01276_consen 377 SELGIPGYIVEKYLREHGIQVE 398 (417)
T ss_dssp -SS---HHHHHHHHHHTTEE-S
T ss_pred cccCCCHHHHHHHHHHcCCEEE
Confidence 2788889998888899873
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.48 E-value=7e-12 Score=140.74 Aligned_cols=171 Identities=14% Similarity=0.170 Sum_probs=118.8
Q ss_pred HHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHH-hcCCEEE
Q 006746 174 AMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSE-KRGARVM 243 (632)
Q Consensus 174 ~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~-~~G~~v~ 243 (632)
+.|+.|+++++ ++|+ .|++|+|+++|+.+++.++ ..+||.|++.. .|+. + ...++ +.|++++
T Consensus 98 ~LR~aiA~~l~~~~g~~v~v~pe--~Ivit~Ga~~al~~l~~~l-~~pGD~Vlv~~P~Y~~--~---~~~~~~~~G~~vv 169 (496)
T PLN02376 98 KFRQAIAHFMGKARGGKVTFDPE--RVVMSGGATGANETIMFCL-ADPGDVFLIPSPYYAA--F---DRDLRWRTGVEII 169 (496)
T ss_pred HHHHHHHHHHHHHhCCCCcCChh--hEEEccchHHHHHHHHHHh-CCCCCEEEECCCCccc--h---HHHHHhhCCCEEE
Confidence 57777777765 5665 7999999999999999999 68999987654 4442 1 12223 5799999
Q ss_pred EEeccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CC
Q 006746 244 SAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PK 314 (632)
Q Consensus 244 ~v~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~ 314 (632)
.++.+. .+..++.+.+++++....+...+++++.++..+|+||..+|.+ |++.|+++|+++|+|-+... +.
T Consensus 170 ~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~ 249 (496)
T PLN02376 170 PVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG 249 (496)
T ss_pred EEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC
Confidence 999853 2356889998877643211123578888999999999999965 56788999999999986432 21
Q ss_pred CCCC---C----CCCCCCCc--EEEEccccccCCCCCceEEEEEeCC
Q 006746 315 DMDS---F----GLSLVRPD--FLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 315 ~m~~---l----dls~~~~D--f~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
...+ + |....++| .++.|+.|.||.+---+|+++..++
T Consensus 250 ~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~ 296 (496)
T PLN02376 250 DFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFND 296 (496)
T ss_pred CcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCH
Confidence 1111 1 11111234 3468999999864345788887543
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-12 Score=136.35 Aligned_cols=351 Identities=14% Similarity=0.118 Sum_probs=198.2
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch--hHHHHHHHHHHHHHcCCCCCCccE
Q 006746 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~--~~~~~~~R~~ia~~l~a~~~ey~v 192 (632)
++-..+|+.++++....+... |-.+.|..++ |++.+ .++..-+.++++++||++|+++.+
T Consensus 27 aSEN~~Sp~v~~al~S~l~nk-----------------yaeg~pg~ry-y~G~~~id~iE~la~~ra~~lF~~~~~~w~a 88 (399)
T PF00464_consen 27 ASENYMSPAVREALGSDLTNK-----------------YAEGYPGKRY-YGGCEYIDEIEELAIERAKELFGAEPKEWYA 88 (399)
T ss_dssp TT-----HHHHHHHTSGGGGS------------------TTEETTEES-SSSTHHHHHHHHHHHHHHHHHHT-STTTEEE
T ss_pred CcccccCHHHHHHhCCcceee-----------------ccccCCCccc-ccCcchhhHHHHHHHHHHHHHhCCCcccceE
Confidence 666788999999876544321 1113343333 44432 567777999999999998776554
Q ss_pred EE-eCCHHHHHHHHHhhCCCCCCCeEEE-ec---cccchhhHHHHHH----HHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 193 VF-TANRTSAFKLLAESYPFMSVKNLLT-VY---DYESEAVEAMIRT----SEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 193 vf-t~naT~al~lv~~sl~~~~gd~ilt-~~---d~~s~~v~~~~~~----a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
-+ .-|++.|...+..++ .++||+|+. .. +|-+ ....... +..+..++...++++.++.||.+++++.+
T Consensus 89 nvqp~SGs~An~av~~aL-l~pGD~Im~l~l~~GGHls--hg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a 165 (399)
T PF00464_consen 89 NVQPHSGSQANLAVYMAL-LKPGDTIMGLSLPHGGHLS--HGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLA 165 (399)
T ss_dssp E---SSHHHHHHHHHHHH-T-TT-EEEEEEGGGT--GG--GT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHH
T ss_pred EeecCCchHHHHHHHHHH-HhhcCcEEecChhhccccc--ccccccccccccccceEEEEeeeeecCCCeECHHHHHHHH
Confidence 43 348999999999999 699999874 32 3322 1111111 11234678888898788999999999998
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC-----CCCCCCCCCCCCCcEEEEcccc-c
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP-----KDMDSFGLSLVRPDFLICSFYQ-I 336 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g-----~~m~~ldls~~~~Df~~~S~hK-~ 336 (632)
...+ ++|+++...+ .=..+|++ +.++|++.|+++++|++|.+| .--.|++ .+|++.+|.|| +
T Consensus 166 ~~~k-----PklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~----~ADvvt~sThKtl 234 (399)
T PF00464_consen 166 KEHK-----PKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP----YADVVTGSTHKTL 234 (399)
T ss_dssp HHH-------SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC----TSSEEEEESSGGG
T ss_pred hhcC-----CCEEEECchh--ccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccc----cceEEEeeccccc
Confidence 8653 6888887764 34567888 889999999999999998774 1113554 37999999999 6
Q ss_pred cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhc
Q 006746 337 FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQS 416 (632)
Q Consensus 337 ~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~ 416 (632)
.| |.| |+++.++.... +.+ .+-..+ ..+.+..+. .-|.+ ..
T Consensus 235 ~G--Prg-giI~~~~~~~~-~~~--~~~~~~-------------------------~~l~~~I~~-avfP~-------~q 275 (399)
T PF00464_consen 235 RG--PRG-GIILTNKGSKN-VDK--KGKEID-------------------------EELAEKIDS-AVFPG-------LQ 275 (399)
T ss_dssp -S--SS--EEEEES-SEEE-E-T--TS-EEE-------------------------HHHHHHHHH-HHTTT-------T-
T ss_pred cc--cCc-eEEEEcCCccc-cCC--cccccH-------------------------HHHHHHhcc-ccCCC-------cc
Confidence 67 986 88888855431 111 000000 011110000 01111 13
Q ss_pred CCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEE
Q 006746 417 GKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVK 496 (632)
Q Consensus 417 Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~ 496 (632)
|.++...|.++. .+|..+.+.....-.+++..-++.|-+.|.+. | ++
T Consensus 276 g~~h~~~iaalA------------------------val~ea~~~~fk~Ya~qVv~NAk~La~~L~~~------G---~~ 322 (399)
T PF00464_consen 276 GGPHMHRIAALA------------------------VALKEALSPEFKEYAKQVVKNAKALAEALQER------G---FK 322 (399)
T ss_dssp SS--HHHHHHHH------------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T----E
T ss_pred cCcchhHHHHHH------------------------HHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC------C---cE
Confidence 556666777776 66666544445667777888888888888886 5 45
Q ss_pred EECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccc
Q 006746 497 IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRK 576 (632)
Q Consensus 497 Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 576 (632)
|.+.. -....|-..+.. ..++...+++.+++.||.+--- .. +.+
T Consensus 323 v~~gg---Td~H~vlvd~~~---~~~~g~~a~~~Le~~gI~vnkn---~i-------------------------P~d-- 366 (399)
T PF00464_consen 323 VVTGG---TDNHQVLVDLRS---FGIDGKEAEKALEEAGIIVNKN---TI-------------------------PGD-- 366 (399)
T ss_dssp EGGGS----SSSEEEEEGGG---GTS-HHHHHHHHHHTTEE-EEE------------------------------TTT--
T ss_pred EEECC---CCCCeEEEEecc---cccchHHHHHHHHhcCeeeccc---cc-------------------------CCC--
Confidence 55422 234566666543 1278889999999999987420 00 000
Q ss_pred ccCCCCCcEEEEccCCCC----CHHHHHHHHHHH
Q 006746 577 DKANLGITVVTASLGYLA----NFEDVYRLWAFV 606 (632)
Q Consensus 577 ~~~~~~~~~VRvSlg~~~----t~eDV~rlv~~l 606 (632)
........||++...+| .++|+..+.++|
T Consensus 367 -~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 367 -RSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp -STTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred -CCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 01223468999987766 567777666543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-12 Score=134.21 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
++.++.++.+++++|.+++ .+++++++++|+..++.++ .++||+|++. .|.+ ....+...++..|+++.. .
T Consensus 54 ~~~~~Le~~lA~~~g~~~e--~ilv~~gg~~a~~~~~~al-~~~gd~Vli~~~d~p--~~~s~~~~~~l~ga~~~~--~- 125 (346)
T TIGR03576 54 IFEEKVQELGREHLGGPEE--KILVFNRTSSAILATILAL-EPPGRKVVHYLPEKP--AHPSIPRSCKLAGAEYFE--S- 125 (346)
T ss_pred HHHHHHHHHHHHHcCCCcc--eEEEECCHHHHHHHHHHHh-CCCCCEEEECCCCCC--CchhHHHHHHHcCCEEec--c-
Confidence 6778999999999999866 6999999999999999999 5899998753 3333 133444556667887532 2
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccc---cchH-HHHHHhhCCcEEEEeccccCCCC--CCCCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR---YPYL-WMRIAQENDWHILIDACALGPKD--MDSFGLS 322 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~---~pl~-i~~~a~~~g~~vlvDaaq~~g~~--m~~ldls 322 (632)
.+.++++. . + ++++++++. .+++|.. -|++ |+++|+++|++++||-|+..+.. ...-.+.
T Consensus 126 -----~~l~~l~~-~-~------~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~ 191 (346)
T TIGR03576 126 -----DELSELKK-I-D------GTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPAL 191 (346)
T ss_pred -----CCHHHHhh-C-c------CceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHH
Confidence 13344321 1 1 247888876 4788988 5788 88999999999999999876531 0111112
Q ss_pred CCCCcEEEEcccccc-CCCCCceEEEEEeCCCccccC
Q 006746 323 LVRPDFLICSFYQIF-GENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~-G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
.+++|+++.|++|.+ | +. .|+++.+++.++.|.
T Consensus 192 ~~~~divv~s~SKalaG--~r-~G~v~~~~~li~~l~ 225 (346)
T TIGR03576 192 DLGADLVVTSTDKLMDG--PR-GGLLAGRKELVDKIK 225 (346)
T ss_pred HcCCcEEEeccchhccc--cc-eEEEEeCHHHHHHHH
Confidence 346799999999966 6 55 589888887766554
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-12 Score=132.36 Aligned_cols=174 Identities=10% Similarity=0.055 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhc-CCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKR-GARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~-G~~v~~v~~~ 248 (632)
....+.+++|++++|.++ ++++.|+++++.++...+ ..+||+|++..-.|...... ..+... +++++.++.+
T Consensus 34 ~~~~~L~~~la~~~g~~~----~~v~~~g~~a~~~~l~~~-~~~gd~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 106 (333)
T PRK10534 34 PTVNALQDYAAELSGKEA----ALFLPTGTQANLVALLSH-CERGEEYIVGQAAHNYLYEA--GGAAVLGSIQPQPIDAA 106 (333)
T ss_pred HHHHHHHHHHHHHhCCCe----EEEeCchHHHHHHHHHHh-cCCCCeeEEechhhhhHhcC--CchHHhcCceEEeecCC
Confidence 345689999999999863 457778888877766666 67899977543222111111 001222 3677777776
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEeccccCCCC---CCCC-C
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACALGPKD---MDSF-G 320 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq~~g~~---m~~l-d 320 (632)
.++.+|+++|++++++++....+++++.+. ++.||..+|.+ | +++|+++|+.+++|.|...... -..+ +
T Consensus 107 -~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~--np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~ 183 (333)
T PRK10534 107 -ADGTLPLDKVAAKIKPDDIHFARTRLLSLE--NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE 183 (333)
T ss_pred -CCCCCCHHHHHHhhcccCcCcccceEEEEe--cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH
Confidence 567789999999886521111135788887 45579999987 5 4678889999999987443210 0011 1
Q ss_pred CCCCCCcEEEEccccccCCCCCceE-EEEEeCCCcccc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFG-CLFVKKSTVPIL 357 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G-~L~Vr~~~~~~L 357 (632)
+. ...|.++.++.|.||. + +| +++..++.++.+
T Consensus 184 ~~-~~~~~~~~s~SK~~~~-~--~G~~~~~~~~~i~~~ 217 (333)
T PRK10534 184 IT-QYCDSFTICLSKGLGT-P--VGSLLVGNRDYIKRA 217 (333)
T ss_pred HH-hcCCEEEEEeEcCCCC-c--ccceEEcCHHHHHHH
Confidence 11 1347777899999986 4 67 455456555433
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-11 Score=130.32 Aligned_cols=297 Identities=8% Similarity=0.092 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--------CCCCC-eEEEe-ccccchhhHHHHHHH----
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--------FMSVK-NLLTV-YDYESEAVEAMIRTS---- 235 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--------~~~gd-~ilt~-~d~~s~~v~~~~~~a---- 235 (632)
+...+..++++++++.+ .+.|++++++|+..+..... ..+|+ .|++. ..||......+...-
T Consensus 79 ~~~~~l~~~l~~~~~~~----~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~ 154 (401)
T TIGR01885 79 DVFGEFAEYVTKLFGYD----KVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDS 154 (401)
T ss_pred HHHHHHHHHHHhhcCCC----EEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccc
Confidence 45568888999998742 68999999999998877631 12344 36554 356653233322100
Q ss_pred -HhcC---CEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEE
Q 006746 236 -EKRG---ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILI 306 (632)
Q Consensus 236 -~~~G---~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlv 306 (632)
...| ..+..++. -++++|+++|.+. ...+..|++..+.+.+|...| ++ +.++|+++|+++++
T Consensus 155 ~~~~~~~~~~~~~~~~------~d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~ 225 (401)
T TIGR01885 155 RTNFGPYVPGFKKIPY------NNLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIA 225 (401)
T ss_pred ccccCCCCCCceEeCC------CCHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 0112 12222222 1578899888642 134678888888889999998 88 99999999999999
Q ss_pred eccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 307 DACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 307 Daaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
|.++.. |.. +..++...+.||++++| |.+|.+-.-+|++..+++.++.+.....+.+ +
T Consensus 226 DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t----------~------- 286 (401)
T TIGR01885 226 DEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSAVLADDDVMLTIKPGEHGST----------Y------- 286 (401)
T ss_pred echhhCCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEEEEEcHHHHhhccCCCCCCC----------C-------
Confidence 998642 211 11223344678988876 9665210126788887776654432111000 0
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 463 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl 463 (632)
.+ +.+...+. .++|+.+.+.
T Consensus 287 ----------------~~------------------~p~~~~aa------------------------~a~L~~i~~~-- 306 (401)
T TIGR01885 287 ----------------GG------------------NPLACAVA------------------------VAALEVLEEE-- 306 (401)
T ss_pred ----------------CC------------------CHHHHHHH------------------------HHHHHHHHhc--
Confidence 00 00001111 2677777643
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCcc
Q 006746 464 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL 543 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~ 543 (632)
.+.+|.+.+.+++++.|.++.+ +.+.-+ ..+|.+..+-+.+.... .....+.+.+.++||.+..+
T Consensus 307 -~l~~~~~~~~~~~~~~L~~l~~------~~~~~~-----~g~g~~~~i~~~~~~~~-~~~~~l~~~l~~~Gv~v~~~-- 371 (401)
T TIGR01885 307 -KLAENAEKLGEIFRDQLKKLPK------PIITEV-----RGRGLLNAIVIDESKTG-RTAWDLCLKLKEKGLLAKPT-- 371 (401)
T ss_pred -cHHHHHHHHHHHHHHHHHhccC------CceeEE-----eecCeeEEEEeccCcch-hHHHHHHHHHHhCCEEEEec--
Confidence 4568899999999999999832 332111 13577777666442111 12344444445678887411
Q ss_pred CChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 544 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 544 c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+...||+++++..+.+||+++++.|+++||
T Consensus 372 --------------------------------------~~~~lRi~p~l~~t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 372 --------------------------------------HGNIIRLAPPLVITEEQLDEGLEIIKKVID 401 (401)
T ss_pred --------------------------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence 235899999999999999999999999876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=142.26 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=119.0
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
...+++|+++.|.+ .+++++|+++|+.++..++ .++||+|++.. -|.. ....+...++..|++++.++.
T Consensus 86 ~~Le~~lA~leg~~----~~iv~~sG~~Ai~~~l~al-~~~Gd~Vv~~~p~Y~~-~~~~~~~~l~~~Gi~~v~~~~---- 155 (427)
T PRK07049 86 EIVEDRLAVYEGAE----SAALFSSGMSAIATTLLAF-VRPGDVILHSQPLYGG-TETLLAKTFRNFGVGAVGFAD---- 155 (427)
T ss_pred HHHHHHHHHHhCCC----cEEEEccHHHHHHHHHHHH-hCCCCEEEEcCCCccc-HHHHHHHHHHhcCcEEEEEeC----
Confidence 47889999999864 4777888889999999888 68999987654 3332 333334455778998766652
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh------CCcEEEEeccccCCCCCCCCCCCCC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE------NDWHILIDACALGPKDMDSFGLSLV 324 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~------~g~~vlvDaaq~~g~~m~~ldls~~ 324 (632)
..+.+++++.|.+.. .+.+++++.+...+|+||..+|++ +.++++. +++.++||-+-..+....++ ..
T Consensus 156 -~~d~~~l~~~l~~~~-~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl---~~ 230 (427)
T PRK07049 156 -GLSEAAIGAAAEAAA-AKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPL---EH 230 (427)
T ss_pred -CCCHHHHHHHHHhhc-cCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCcc---cc
Confidence 146678887776421 113579999999999999999999 9999887 79999999984333311244 34
Q ss_pred CCcEEEEccccccCCCCCc--eEEEEEeCCCcc
Q 006746 325 RPDFLICSFYQIFGENPSG--FGCLFVKKSTVP 355 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~ 355 (632)
+.|+++.|+-|.+|. ..| +|+++.+++.++
T Consensus 231 g~divv~S~SK~~gG-~~glr~G~vv~~~~l~~ 262 (427)
T PRK07049 231 GADLSVYSLTKYVGG-HSDLVAGAVLGRKALIR 262 (427)
T ss_pred CCCEEEEcCceeecC-CCCcEEEEEECCHHHHH
Confidence 789999999998773 223 466665554443
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-11 Score=130.86 Aligned_cols=162 Identities=14% Similarity=0.164 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
..+.|+.|+++++++++ .|++|+|+++++.+++..+ .+ ++|++. ..|+ .....++..|++++.++.+.+
T Consensus 56 ~~~lr~~ia~~~~~~~~--~i~it~Ga~~~l~~~~~~~--~~-~~v~i~~P~y~-----~~~~~~~~~g~~~~~~~~~~~ 125 (354)
T PRK06358 56 YLELRKRIASFEQLDLE--NVILGNGATELIFNIVKVT--KP-KKVLILAPTFA-----EYERALKAFDAEIEYAELTEE 125 (354)
T ss_pred HHHHHHHHHHHhCCChh--hEEECCCHHHHHHHHHHHh--CC-CcEEEecCChH-----HHHHHHHHcCCeeEEEeCccc
Confidence 35899999999999876 7999999999999999987 33 455433 3333 224456778999999988633
Q ss_pred -ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEecccc--C--CCCCCCCC-
Q 006746 251 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACAL--G--PKDMDSFG- 320 (632)
Q Consensus 251 -~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~--~--g~~m~~ld- 320 (632)
...++ +++.+.+.++ +++++++..+|+||..++ ++ |+++|+++|+++++|.+-. . +.....+.
T Consensus 126 ~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~ 198 (354)
T PRK06358 126 TNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINY 198 (354)
T ss_pred cCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHh
Confidence 23577 6666655432 588888888999999998 45 6778899999999998732 1 11000111
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
++..+-=+++.|+-|.||.+-..+|++++.
T Consensus 199 ~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~ 228 (354)
T PRK06358 199 LENFKNLIIIRAFTKFFAIPGLRLGYGLTS 228 (354)
T ss_pred ccCCCCEEEEEechhhccCcchhheeeecC
Confidence 111122278899999999643456777664
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-11 Score=134.75 Aligned_cols=175 Identities=13% Similarity=0.112 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHH-HHHHHHHhhCCCC--CCCeEEEe-ccccchhhHHHHHHHHhcCCEEE
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTANRT-SAFKLLAESYPFM--SVKNLLTV-YDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT-~al~lv~~sl~~~--~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
...+..+..+.+++++|++.-+ ..++++++| .++-+++.++... +|++|+++ ..|.| .. ..+...|++++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~-~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S-~~----kAi~~~G~~pv 176 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIK-SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKS-CI----KAISTAGFEPR 176 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHH-HH----HHHHHcCCeEE
Confidence 3578889999999999997432 478889999 6888888887643 57887654 45544 22 34566899999
Q ss_pred EEec--cCCccccCHHHHHHHHHhcCcCCCceeEEEEecc-CCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC-CC
Q 006746 244 SAEF--SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM-DS 318 (632)
Q Consensus 244 ~v~~--~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~-sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m-~~ 318 (632)
.++. +.++..+|+++|+++|++.+ .+..++++... ...+|..-|++ |.++|+++|+++++|+|+..+... ..
T Consensus 177 ~Vd~~~d~~~~~iD~e~Le~aIt~~~---~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~ 253 (444)
T TIGR03531 177 VIETVLDGDELTTDVEDIERAIEEIG---PDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYME 253 (444)
T ss_pred EeeeeecCcCCCcCHHHHHHHHHhcc---CCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhh
Confidence 9984 45678899999999998632 11233333322 33445788999 999999999999999998875410 01
Q ss_pred C---CCCCCCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 319 F---GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 319 l---dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
+ ++..-.+|.+++|+||++.. |.+-|+++++++
T Consensus 254 ~~~~g~~~Grad~vv~s~hK~l~~-pg~Gg~I~~~d~ 289 (444)
T TIGR03531 254 LINKAIKVGRVDAVVSSTDKNFMV-PVGGAIIYSFDE 289 (444)
T ss_pred hhhccccccCCCeEEEeCccCCCC-CCCEEEEEECCH
Confidence 1 11111479999999998886 777777777554
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.7e-12 Score=134.88 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=124.9
Q ss_pred cccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCC
Q 006746 162 LLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 162 ~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~ 240 (632)
..|++......+...++|+++-|+. .++.++++..|+..+..++ .++||+|+... -|.. ....+.+...+.|+
T Consensus 47 ~~Y~R~gnPt~~~le~~la~Le~g~----~a~~~~SGmaAi~~~l~~l-l~~Gd~iv~~~~~Y~~-t~~~~~~~l~~~gv 120 (386)
T PF01053_consen 47 YIYSRYGNPTVRALEQRLAALEGGE----DALLFSSGMAAISAALLAL-LKPGDHIVASDDLYGG-TYRLLEELLPRFGV 120 (386)
T ss_dssp CSBTTTC-HHHHHHHHHHHHHHT-S----EEEEESSHHHHHHHHHHHH-S-TTBEEEEESSSSHH-HHHHHHHCHHHTTS
T ss_pred cceeccccccHHHHHHHHHHhhccc----ceeeccchHHHHHHHHHhh-cccCCceEecCCccCc-chhhhhhhhcccCc
Confidence 3456555666678899999999984 4677789999999888888 78999987544 4543 56666667788999
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCC-cEEEEeccccCCCCCCC
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEND-WHILIDACALGPKDMDS 318 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g-~~vlvDaaq~~g~~m~~ 318 (632)
++.+++. -+.++|+++++++ +++|.+-..+|++....|++ ++++||++| +.++||.+-.-|....|
T Consensus 121 ~v~~~d~------~d~~~l~~~l~~~------t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~p 188 (386)
T PF01053_consen 121 EVTFVDP------TDLEALEAALRPN------TKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNP 188 (386)
T ss_dssp EEEEEST------TSHHHHHHHHCTT------EEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-G
T ss_pred EEEEeCc------hhHHHHHhhcccc------ceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeecc
Confidence 9998865 2678999999875 49999999999999999999 999999999 99999998655643345
Q ss_pred CCCCCCCCcEEEEccccccCCCCCc---eEEEEEeC
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKK 351 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G---~G~L~Vr~ 351 (632)
|+ +++|+++-|.-|.++. .| .|++.+++
T Consensus 189 L~---~GaDivv~S~TKyl~G--hsdv~~G~vv~~~ 219 (386)
T PF01053_consen 189 LE---LGADIVVHSATKYLSG--HSDVMGGAVVVNG 219 (386)
T ss_dssp GG---GT-SEEEEETTTTTTT--SSSE-EEEEEESS
T ss_pred Cc---CCceEEEeeccccccC--CcceeeEEEEECc
Confidence 55 4799999999998773 35 46666655
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-12 Score=135.44 Aligned_cols=168 Identities=12% Similarity=0.172 Sum_probs=120.3
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.|+++++++++ .|++|+|+++++.+++..+ .++||+|++.. .|+ .....++..|++++.++.+ +
T Consensus 67 ~~Lr~aia~~~~~~~~--~I~vt~Gs~e~i~~~~~~l-~~~gd~vlv~~P~y~-----~~~~~~~~~g~~v~~v~~~--~ 136 (366)
T PRK01533 67 TTLRQTIANKLHVKME--QVLCGSGLDEVIQIISRAV-LKAGDNIVTAGATFP-----QYRHHAIIEGCEVKEVALN--N 136 (366)
T ss_pred HHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEcCCcHH-----HHHHHHHHcCCEEEEeecC--C
Confidence 4789999999999876 7999999999999999998 68999977543 333 2345567889999999985 3
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHH---hhCCcEEEEecccc--CCC-C-CCCCCC-C
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIA---QENDWHILIDACAL--GPK-D-MDSFGL-S 322 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a---~~~g~~vlvDaaq~--~g~-~-m~~ldl-s 322 (632)
+.+++++|+++++++ ++++.++..+|+||..+|.+ +.+++ ++++ .+++|-+-. ... . ...+.+ .
T Consensus 137 ~~~d~~~l~~~~~~~------~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~ 209 (366)
T PRK01533 137 GVYDLDEISSVVDND------TKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLE 209 (366)
T ss_pred CCcCHHHHHHHhCcC------CcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhc
Confidence 458999999888654 48899999999999999987 65554 4555 577787632 110 0 001111 1
Q ss_pred CCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 323 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
..+--+++.|+-|.||.+.--+|+++..++.++.+
T Consensus 210 ~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l 244 (366)
T PRK01533 210 KHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKL 244 (366)
T ss_pred cCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHH
Confidence 22235888999999995322358877766555444
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-11 Score=128.97 Aligned_cols=203 Identities=11% Similarity=0.140 Sum_probs=139.1
Q ss_pred CceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 108 ~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
+.++||++... ..|..+++++.+.+... + . . .|.. .-..+.|+.|++++|++
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~-----------------~-~--~Y~~---~g~~~lr~~ia~~~~~~ 71 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKRV----P-----------------F-N--RYPH---ITSDPLREAIAEFYGLD 71 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhcC----c-----------------c-c--cCCC---CCHHHHHHHHHHHhCcC
Confidence 45899988877 45677777765433210 0 0 0 0110 01247899999999998
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
++ .|++|+|+++++.+++..+ +||+|++.. .|+ .....++..|++++.++.+ .+..++.+++++.+.
T Consensus 72 ~~--~I~~t~G~~~~l~~~~~~~---~gd~V~v~~P~y~-----~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~~~- 139 (337)
T PRK03967 72 AE--NIAVGNGSDELISYLVKLF---EGKHIVITPPTFG-----MYSFYAKLNGIPVIDVPLK-EDFTIDGERIAEKAK- 139 (337)
T ss_pred cc--eEEEcCCHHHHHHHHHHHh---CCCeEEEeCCChH-----HHHHHHHHcCCeEEEeecC-CCCCcCHHHHHHhcc-
Confidence 76 7999999999999999876 589976543 443 1233457789999999987 455788888877542
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecccc--CCCCCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACAL--GPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~--~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
+ ++++.++..+|+||..+|.+ +.++++ +++++++|.+.. .+..+.++ ++...-=+++.|+-|.||.+--
T Consensus 140 ~------~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~-~~~~~~vi~l~S~SK~~~l~Gl 211 (337)
T PRK03967 140 N------ASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGL-IDEYPNLILLRTFSKAFGLAGI 211 (337)
T ss_pred C------CCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHH-HhhCCCEEEEecchHhhcchhh
Confidence 2 37888999999999999999 988885 699999999743 22111111 1111113677999999996323
Q ss_pred ceEEEEEeCCCcccc
Q 006746 343 GFGCLFVKKSTVPIL 357 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L 357 (632)
-+|++++.++.++.+
T Consensus 212 RiG~iv~~~~~i~~~ 226 (337)
T PRK03967 212 RAGYAIANEEIIDAL 226 (337)
T ss_pred hheeeecCHHHHHHH
Confidence 479988876655444
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-11 Score=132.43 Aligned_cols=172 Identities=11% Similarity=0.068 Sum_probs=116.4
Q ss_pred HHHHHHHHHc----CC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----NI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ |. +++ ..|++|+|+++++.+++..+ .++||+|++. ..|+. .. ..++..|+++..++
T Consensus 71 ~lr~aia~~~~~~~g~~~~~~-~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~-~~----~~~~~~g~~~~~v~ 143 (395)
T PRK08175 71 RLRRAISRWYQDRYDVDIDPE-SEAIVTIGSKEGLAHLMLAT-LDHGDTVLVPNPSYPI-HI----YGAVIAGAQVRSVP 143 (395)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CcEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcc-hH----HHHHHcCCeEEEEe
Confidence 5666666664 43 433 15999999999999999988 6899998754 34543 11 22356799999998
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC----CCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG----PKDMDS 318 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~----g~~m~~ 318 (632)
.+... ...+++++++.... .+++++.++..+|+||..+|. + |+++|+++|+++++|-+-.. +....+
T Consensus 144 ~~~~~--~~~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~ 218 (395)
T PRK08175 144 LVEGV--DFFNELERAIRESY---PKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPS 218 (395)
T ss_pred cccCC--CcHHHHHHHHhhcc---CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcc
Confidence 86322 34788888776421 245888888889999999998 4 78889999999999986421 111011
Q ss_pred C-CCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 319 F-GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 319 l-dls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+ .+.. .+..+++.|+-|.||.+-..+|+++..+++++.+
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~ 259 (395)
T PRK08175 219 IMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSAL 259 (395)
T ss_pred hhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHH
Confidence 1 1111 1234678999999986312368887666555433
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=135.36 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=121.6
Q ss_pred HHHHHHHHHc----C---CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFL----N---ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l----~---a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.|++++ | ++++ ..|++|+|+++++.+++..+ ..+||.|++. ..|+. ....++..|+++..+
T Consensus 85 ~lr~aia~~~~~~~g~~~~~~~-~~I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~-----~~~~~~~~g~~v~~v 157 (410)
T PRK06290 85 EFKEAAARYMEKVFGVKDIDPV-TEVIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPV-----TGTHTKYYGGEVYNL 157 (410)
T ss_pred HHHHHHHHHHHHHcCCCcCCCc-ceEEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCcc-----HHHHHHHcCCEEEEE
Confidence 6677777775 4 4443 26999999999999999988 6899997654 35542 234567789999999
Q ss_pred eccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC----CCCC
Q 006746 246 EFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG----PKDM 316 (632)
Q Consensus 246 ~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~----g~~m 316 (632)
+.+.. ...++++++++.+.++ ++++.+...+|+||..+|. + |+++|+++|+++++|-+... +...
T Consensus 158 ~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~ 231 (410)
T PRK06290 158 PLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPL 231 (410)
T ss_pred ecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCc
Confidence 98732 3456889998887643 4888888889999999995 4 77889999999999987432 1100
Q ss_pred CCCCCC-CCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 317 DSFGLS-LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 317 ~~ldls-~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.-+.+. ..+.++++.|+-|.+|.+-.-+|+++..++.++.+
T Consensus 232 s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l 273 (410)
T PRK06290 232 SFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAF 273 (410)
T ss_pred ChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHH
Confidence 011121 12457999999999985312269888766655433
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-11 Score=131.77 Aligned_cols=293 Identities=11% Similarity=0.061 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC------------CC-CCCCeEEEeccccchhhHHHHHHHH
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY------------PF-MSVKNLLTVYDYESEAVEAMIRTSE 236 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl------------~~-~~gd~ilt~~d~~s~~v~~~~~~a~ 236 (632)
...++..+++++++|.+. .++| +++..|.-.++.++ +. .+++.|+.+...|+..+..++ +++
T Consensus 147 ~~h~~LE~~LA~f~g~e~---all~-sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~-ls~ 221 (476)
T PLN02955 147 TYHRLLESSLADLKKKED---CLVC-PTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR-LAE 221 (476)
T ss_pred HHHHHHHHHHHHHHCCCc---EEEE-CChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH-hcc
Confidence 566789999999999862 4555 45555544444433 11 233446666655553555643 344
Q ss_pred hc-CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC
Q 006746 237 KR-GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK 314 (632)
Q Consensus 237 ~~-G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~ 314 (632)
++ ++++..++. .|+++|+++|...+ ....+|++..+-++.|...|++ +.++++++|++++||-|+..|.
T Consensus 222 ~~~~a~~~~f~H------ND~~~Le~~L~~~~---~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv 292 (476)
T PLN02955 222 RQGNVEVFVYRH------CDMYHLNSLLSSCK---MKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFV 292 (476)
T ss_pred ccCCceEEEeCC------CCHHHHHHHHHhCC---CCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCce
Confidence 44 477776654 37899999987533 2347899999999999999999 9999999999999999988643
Q ss_pred C-------CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCC
Q 006746 315 D-------MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE 387 (632)
Q Consensus 315 ~-------m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e 387 (632)
- ...+++. -++|+++.++=|.||. . -|++..+++.++.+... +.. +.
T Consensus 293 ~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~-~--GGfi~gs~~~~~~l~~~--~~~---------~i----------- 346 (476)
T PLN02955 293 CGENGGGVAEEFNCE-ADVDLCVGTLSKAAGC-H--GGFIACSKKWKQLIQSR--GRS---------FI----------- 346 (476)
T ss_pred ecCCCCcHHHHhCCC-CCCcEEEEeCccchhc-c--CceeecHHHHHHHHHHh--CCC---------Ce-----------
Confidence 0 0123443 4679999999999995 3 24455566555444321 100 00
Q ss_pred ccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHH
Q 006746 388 PEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMIS 467 (632)
Q Consensus 388 ~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~ 467 (632)
-+| +. ..+...+. .++++++... +...
T Consensus 347 ------------fSt-al--------------pp~~aaa~------------------------laal~l~~~~--~~~r 373 (476)
T PLN02955 347 ------------FST-AI--------------PVPMAAAA------------------------YAAVVVARKE--KWRR 373 (476)
T ss_pred ------------ecc-cc--------------cHHHHHHH------------------------HHHHHHHhcC--HHHH
Confidence 000 00 00111111 1667766542 2345
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChH
Q 006746 468 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 468 ~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~ 547 (632)
++++..++++++. + |.+ ..+||+.+-+.+.+ ....+.+.+.++||.+..-.
T Consensus 374 ~~L~~n~~~fr~~---~------G~~-----------~~sPI~pI~ig~~~----~a~~~~~~L~~~Gi~v~~i~----- 424 (476)
T PLN02955 374 KAIWERVKEFKAL---S------GVD-----------ISSPIISLVVGNQE----KALKASRYLLKSGFHVMAIR----- 424 (476)
T ss_pred HHHHHHHHHHHHh---c------CCC-----------CCCCEEEEEeCCHH----HHHHHHHHHHHCCCEEEEEC-----
Confidence 6666777777652 2 322 13788888776521 22334555556799886321
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
| +. -+.+...+|+++...+|.|||++|++.|++..|.
T Consensus 425 ----y---------------Pt---------VP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 425 ----P---------------PT---------VPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred ----C---------------CC---------CCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 0 00 1223457999999999999999999999988665
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-11 Score=128.62 Aligned_cols=208 Identities=12% Similarity=0.165 Sum_probs=124.5
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|+|..+ .|.-.+.+++++.+.+... + . + ++. + ..+...+..++++
T Consensus 29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~----~----~---~------~~~-----~---~~~~~~~la~~l~ 83 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKL----W----H---V------SNL-----Y---RIPEQERLAERLV 83 (389)
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhc----C----c---c------ccc-----c---CChHHHHHHHHHH
Confidence 5778999866 4666677787766544321 0 0 0 110 0 1233446777788
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC---CCCCCC----eEE-EeccccchhhHHHHHHHHhcCCEEEEE---eccC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY---PFMSVK----NLL-TVYDYESEAVEAMIRTSEKRGARVMSA---EFSW 249 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl---~~~~gd----~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v---~~~~ 249 (632)
++.+. + .|+|++|+++|+..+.... ...+|+ +|+ ....||.....++. ..|.....- +..
T Consensus 84 ~~~~~--~--~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~----~~~~~~~~~~~~~~~- 154 (389)
T PRK01278 84 ENSFA--D--KVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIA----AGGQEKYLEGFGPLV- 154 (389)
T ss_pred hhCCC--C--EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHh----ccCChhhcccCCCCC-
Confidence 77643 2 6999999999999886543 234554 565 45577763333321 112111110 110
Q ss_pred Ccc----ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc----chH-HHHHHhhCCcEEEEeccccC-CCC--CC
Q 006746 250 PRL----RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYL-WMRIAQENDWHILIDACALG-PKD--MD 317 (632)
Q Consensus 250 ~~~----~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~----pl~-i~~~a~~~g~~vlvDaaq~~-g~~--m~ 317 (632)
+.. ..+++++++.|+++ +++|++..+.+.+|... .++ +.++|+++|+++++|-++.. +.. +.
T Consensus 155 ~~~~~~~~~d~~~l~~~l~~~------~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~ 228 (389)
T PRK01278 155 PGFDQVPFGDIEALKAAITPN------TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF 228 (389)
T ss_pred CCceEeCCCCHHHHHHhhCCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce
Confidence 110 14788999888643 58888888888899554 566 78899999999999998763 221 11
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
..+.....||++ ++-|.+|. ..-+|+++.+++.++.+
T Consensus 229 ~~~~~~~~pdi~--t~sK~l~~-G~~ig~~~~~~~~~~~~ 265 (389)
T PRK01278 229 AHEWAGVTPDIM--AVAKGIGG-GFPLGACLATEEAAKGM 265 (389)
T ss_pred eecccCCCCCEE--EEehhccC-CcceEEEEEcHHHHhcc
Confidence 122223457865 56697761 11288988887765544
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-11 Score=130.35 Aligned_cols=167 Identities=13% Similarity=0.106 Sum_probs=118.7
Q ss_pred HHHHHHHHHHcCC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 173 SAMKKRIMDFLNI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 173 ~~~R~~ia~~l~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
.+.|+.++++++. .++ ..|+.|+|+++|+.+++..+ .++||.|++.. .|+ .....++..|++++.++.+
T Consensus 124 ~~lr~~ia~~~~~~~~~~-~~Iiit~G~~~al~~~~~~l-~~pgd~Vlv~~P~y~-----~~~~~~~~~g~~~~~v~~~- 195 (431)
T PRK15481 124 PELHAWAARWLRDDCPVA-FEIDLTSGAIDAIERLLCAH-LLPGDSVAVEDPCFL-----SSINMLRYAGFSASPVSVD- 195 (431)
T ss_pred HHHHHHHHHHHhhccCCc-CeEEEecCcHHHHHHHHHHh-CCCCCEEEEeCCCcH-----HHHHHHHHcCCeEEeeccC-
Confidence 3578888888763 222 27999999999999999998 68899977543 333 2245567889999999986
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEE-eccCCCCccccchH----HHHHHhhC-CcEEEEecccc--C--CCCCCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYPYL----WMRIAQEN-DWHILIDACAL--G--PKDMDSF 319 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~-~~~sn~TG~~~pl~----i~~~a~~~-g~~vlvDaaq~--~--g~~m~~l 319 (632)
+++ ++.++|+++++++ ++++.+ |..+|+||..++.+ |+++|+++ ++++++|-+-. . +. ...+
T Consensus 196 ~~g-~~~~~l~~~~~~~------~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~~~ 267 (431)
T PRK15481 196 AEG-MQPEKLERALAQG------ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY-HSVI 267 (431)
T ss_pred CCC-CCHHHHHHHHhcC------CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC-CCCC
Confidence 343 8999999988753 356555 58999999999984 67788888 99999997532 1 11 0112
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.. ..+--+++.||-|.|| +--.+|+++..++.++.+
T Consensus 268 ~~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~ 303 (431)
T PRK15481 268 PQ-TTQRWALIRSVSKALG-PDLRLAFVASDSATSARL 303 (431)
T ss_pred cC-CCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHH
Confidence 21 1123489999999999 334568777665554433
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-11 Score=132.37 Aligned_cols=169 Identities=12% Similarity=0.084 Sum_probs=116.4
Q ss_pred HHHHHHHHHc----C----CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCe--EEEec-cccchhhHHHHHHHHhcCCEE
Q 006746 174 AMKKRIMDFL----N----ISENDYGMVFTANRTSAFKLLAESYPFMSVKN--LLTVY-DYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 174 ~~R~~ia~~l----~----a~~~ey~vvft~naT~al~lv~~sl~~~~gd~--ilt~~-d~~s~~v~~~~~~a~~~G~~v 242 (632)
+.|+.|++++ | ++++ ..|++|+|+++|+.+++..+ ..+||+ |++.. .|. .....++..|+++
T Consensus 68 ~lr~aia~~~~~~~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l-~~~gd~~~vlv~~P~y~-----~~~~~~~~~g~~~ 140 (393)
T TIGR03538 68 ELRQAIARWLERRFDLPTGVDPE-RHVLPVNGTREALFAFAQAV-INPGQAPLVVMPNPFYQ-----IYEGAALLAGAEP 140 (393)
T ss_pred HHHHHHHHHHHHhhCCcccCCCC-ceEEECCCcHHHHHHHHHHH-cCCCCcceEEecCCCCc-----chHHHHHhcCCeE
Confidence 6788888877 3 4442 26999999999999999998 688986 55442 333 1233467789999
Q ss_pred EEEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC-CCC-
Q 006746 243 MSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG-PKD- 315 (632)
Q Consensus 243 ~~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~-g~~- 315 (632)
+.++.+.. ...++.+++++++.++ ++++.++..+|+||..++ ++ |+++|+++|+++|+|-+-.- -.+
T Consensus 141 ~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~ 214 (393)
T TIGR03538 141 YFLNCTAENGFLPDFDAVPESVWRR------CQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDE 214 (393)
T ss_pred EEeeccccCCCCCCHHHHHHHHhhc------ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCC
Confidence 99998632 2457889999888654 488888999999999999 45 67888999999999987331 100
Q ss_pred -CCCCC----CCCC-----CCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 316 -MDSFG----LSLV-----RPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 316 -m~~ld----ls~~-----~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
..... +... .-=+++.|+-|.||.+-..+|+++..++.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~ 264 (393)
T TIGR03538 215 GNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILK 264 (393)
T ss_pred CCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHH
Confidence 00110 0011 1128899999988853334677766555443
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-11 Score=127.64 Aligned_cols=167 Identities=14% Similarity=0.107 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
..+.|++|+++++.+++ .|++|+|+++++.+++. + +.+|+ +++.. |+ .......++..|++++.+|.+.
T Consensus 42 ~~~lr~~ia~~~~~~~~--~I~it~Gs~~~l~~~~~-~-~~~~~-vv~~~--P~--y~~y~~~~~~~G~~v~~vp~~~-- 110 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKI--KVLIGPGLTHFIYRLLS-Y-INVGN-IIIVE--PN--FNEYKGYAFTHGIRISALPFNL-- 110 (332)
T ss_pred HHHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHH-H-hCCCc-EEEeC--CC--hHHHHHHHHHcCCeEEEEeCCc--
Confidence 45899999999999976 69999999999999997 4 45664 44332 32 2333556788999999999862
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc--CCCCCCC-CCC-CC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL--GPKDMDS-FGL-SL 323 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~--~g~~m~~-ldl-s~ 323 (632)
...+.+.+++ . +++++.++.-+|+||..+|.+ |++.|+++|+++++|-+-. ......+ ..+ ..
T Consensus 111 ~~~~~~~l~~---~------~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~ 181 (332)
T PRK06425 111 INNNPEILNN---Y------NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRS 181 (332)
T ss_pred ccCcHHHHhh---c------CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhcc
Confidence 2234443321 1 357888899999999999965 5667888999999998622 1110001 111 11
Q ss_pred CCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
.+-=+++.||-|.||.+---+|+++..++.++.+.
T Consensus 182 ~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~ 216 (332)
T PRK06425 182 YGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISR 216 (332)
T ss_pred CCCEEEEeecHHhcCCchhhheeeecCHHHHHHHH
Confidence 22246778999999963222598888777655443
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-11 Score=118.58 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
..-+.+..+.+++|+|.+ .+=+|.++-+|=-.+..++ -++||-|+.+. .|.+..+ .|++.|.+|..+|-
T Consensus 60 kPpI~~F~~dlaeFlg~D----~~R~t~GARe~KfavMhal-~~~gd~vV~D~~aHYttyv-----AAEragl~v~eVp~ 129 (382)
T COG1103 60 KPPIKDFLEDLAEFLGMD----EVRVTAGAREAKFAVMHAL-CKEGDWVVVDSLAHYTTYV-----AAERAGLNVAEVPN 129 (382)
T ss_pred CCcHHHHHHHHHHHhCCc----eeeecccchhhHHHHHHHh-ccCCCEEEEcCcchHHHHH-----HHHhcCCeEEecCC
Confidence 345567778899999997 4778999999999999998 57899877654 4444222 36889999999986
Q ss_pred c-CCccccCHHHHHHHHHhcCcCC-CceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCC
Q 006746 248 S-WPRLRINSEKLRKMVVSKGKKK-KQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLV 324 (632)
Q Consensus 248 ~-~~~~~i~~~~l~~~i~~~~~~~-~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~ 324 (632)
. -|+..++++.+.+.|++-+++. ..+.|..++|+....|-..|.+ ++++|+++|+++++.+|-.+|. .++.....
T Consensus 130 tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Gr--mpvs~ke~ 207 (382)
T COG1103 130 TGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGR--MPVSGKEI 207 (382)
T ss_pred CCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecc--cccccccc
Confidence 4 4778899999999998643322 4689999999999999999999 9999999999999999999998 68999999
Q ss_pred CCcEEEEcccc-ccCCCCCceEEEEEeCCCccc
Q 006746 325 RPDFLICSFYQ-IFGENPSGFGCLFVKKSTVPI 356 (632)
Q Consensus 325 ~~Df~~~S~hK-~~G~~P~G~G~L~Vr~~~~~~ 356 (632)
++||++.|+|| |-.. .-+|+|-++.+..+.
T Consensus 208 g~DFiVgSGHKsmAAs--~PiGvl~~~eE~ae~ 238 (382)
T COG1103 208 GADFIVGSGHKSMAAS--APIGVLAMSEEWAEI 238 (382)
T ss_pred CCCEEEecCccchhcc--CCeeEEeehhHHHHH
Confidence 99999999999 5442 248999999887654
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-11 Score=134.84 Aligned_cols=170 Identities=14% Similarity=0.166 Sum_probs=117.7
Q ss_pred HHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEE
Q 006746 174 AMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 174 ~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
+.|+.|+++++ ++|+ .|++|+|+|+|+.+++..+ ..+||.|++.. .|+. ... .+..+.|++++.
T Consensus 99 ~LR~aiA~~l~~~~~~~~~v~p~--~Ivit~G~t~al~~l~~~l-~~pGD~Vlv~~P~Y~~-f~~---~~~~~~g~~vv~ 171 (447)
T PLN02607 99 SFRQAMASFMEQIRGGKARFDPD--RIVLTAGATAANELLTFIL-ADPGDALLVPTPYYPG-FDR---DLRWRTGVKIVP 171 (447)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHH--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCcc-hHH---HHHhcCCcEEEE
Confidence 67777777765 4544 7999999999999999988 68999987653 4432 222 222357899988
Q ss_pred EeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC---C-CC
Q 006746 245 AEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG---P-KD 315 (632)
Q Consensus 245 v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~---g-~~ 315 (632)
++.+.. ...++.+++++++.+..+...+++++.++..+|+||..+|- + +++.|+++++++|+|-+-.. . ..
T Consensus 172 v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~ 251 (447)
T PLN02607 172 IHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASE 251 (447)
T ss_pred EeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCC
Confidence 887632 23578999999987533223467899999999999999994 4 67889999999999986432 1 10
Q ss_pred CCCC-CC-CCC---C-Cc--EEEEccccccCCCCCceEEEEEe
Q 006746 316 MDSF-GL-SLV---R-PD--FLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 316 m~~l-dl-s~~---~-~D--f~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
..++ .+ ... + .+ .++.|+-|.||.+.--+|+++..
T Consensus 252 f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~ 294 (447)
T PLN02607 252 FVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSY 294 (447)
T ss_pred cccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEc
Confidence 0111 00 001 1 12 57789999998643446988874
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=128.49 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=121.7
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhH--HHHHHHHhcCCE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVE--AMIRTSEKRGAR 241 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~--~~~~~a~~~G~~ 241 (632)
||. .+...++.++++++++. . .+.|++++|.|..+.+.+. .++|..++...+-|.+... .+..+ ..|.+
T Consensus 31 YG~--D~~~~~~e~~~ae~~g~-~---a~~Fv~sGT~aN~lal~~~-~~~~~~vi~~~~aHi~~~E~Ga~~~~--~~~~~ 101 (342)
T COG2008 31 YGE--DPTTNALEQRIAELFGK-E---AALFVPSGTQANQLALAAH-CQPGESVICHETAHIYTDECGAPEFF--GGGQK 101 (342)
T ss_pred CCC--CHHHHHHHHHHHHHhCC-c---eEEEecCccHHHHHHHHHh-cCCCCeEEEeccccceecccCcHHHH--cCCce
Confidence 554 36778999999999998 3 6999999999999999988 4899998766544422111 11111 12233
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKDMD 317 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~m~ 317 (632)
+.. .+.++|.+++++|+..|.........+.++++--+.+.-|+.+|++ |.+.||++|+.+.+|+|-.+-. +.
T Consensus 102 ~~~--~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA-~v 178 (342)
T COG2008 102 LPI--VPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANA-LV 178 (342)
T ss_pred ecc--CCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHH-HH
Confidence 222 2237899999999999876321223456666666666889999987 4578999999999999644310 01
Q ss_pred C--CCCCC--CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 318 S--FGLSL--VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 318 ~--ldls~--~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
. .++.. ..+|.+.+++.|-.|. | +=.+|+.+++.++++
T Consensus 179 alg~~~~~~~~~~D~v~~~~tK~g~~-~-~gAiv~gn~~~~~~a 220 (342)
T COG2008 179 ALGVALKTIKSYVDSVSFCLTKGGGA-P-VGAIVFGNRDFAKRA 220 (342)
T ss_pred HcCCCHHHHHhhCCEEEEecccCCcc-e-eeeEEEcCHHHHHHH
Confidence 1 23333 3789999999997774 4 455666666665443
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-11 Score=131.18 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=116.0
Q ss_pred HHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ +++++ .|++|+|+++|+.+++..+ ..+||+|++. ..|+. + ...++..|+++..++
T Consensus 78 ~lr~aia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~~l-~~~gd~v~v~~P~y~~--~---~~~~~~~g~~~~~~~ 149 (409)
T PLN00143 78 PARRAIADYLSNDLPYQLSPD--DVYLTLGCKHAAEIIIKVL-ARPEANILLPRPGFPD--V---ETYAIFHHLEIRHFD 149 (409)
T ss_pred HHHHHHHHHHHhhcCCCCCHh--hEEEecChHHHHHHHHHHH-cCCCCEEEEcCCCCcC--H---HHHHHHcCCEEEEEe
Confidence 5778888876 35554 7999999999999999998 6889997654 34442 1 334567899999998
Q ss_pred ccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
.+. .+..+++++|++++.++ +++++++..+|+||..++. + |+++|+++++++++|-+-.- +....
T Consensus 150 ~~~~~~~~~d~~~l~~~~~~~------~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~ 223 (409)
T PLN00143 150 LLPEKGWEVDLDAVEAIADEN------TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFV 223 (409)
T ss_pred ccCCCCCcCCHHHHHHhcccC------CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCc
Confidence 742 23458999998887654 3788888889999999994 4 66788999999999997431 11001
Q ss_pred CCC-CCCCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 318 SFG-LSLVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 318 ~ld-ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
++. +.....=+++.|+-|.||.+--.+|+++..
T Consensus 224 ~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~ 257 (409)
T PLN00143 224 PMGLFASIVPVITLGSISKRWMIPGWGLGWLVTC 257 (409)
T ss_pred chhhhcccCcEEEEccchhhcCCCccceEEEEee
Confidence 111 111112378899999988643456888773
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-11 Score=130.67 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=115.1
Q ss_pred HHHHHHHHHc----CC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----NI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.+++++ |. +++ ..|++|+|+++|+.+++..+ ..+||+|++. ..|+. . ...++..|+++..++
T Consensus 72 ~lr~aia~~~~~~~g~~~~~~-~~I~it~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~-~----~~~~~~~g~~v~~v~ 144 (405)
T PRK09148 72 GLRRAQAAYYARRFGVKLNPD-TQVVATLGSKEGFANMAQAI-TAPGDVILCPNPSYPI-H----AFGFIMAGGVIRSVP 144 (405)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CcEEEcCChHHHHHHHHHHh-cCCCCEEEEcCCCCcc-c----HHHHHhcCCEEEEEe
Confidence 5677777766 43 342 26999999999999999998 6899997754 35543 1 233456799999999
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMDS 318 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~~ 318 (632)
.+.... ..+++++++.... .+++++.++..+|+||..+|.+ |+++|+++|+++++|.+... +....+
T Consensus 145 ~~~~~~--~~~~l~~~~~~~~---~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s 219 (405)
T PRK09148 145 AEPDEE--FFPALERAVRHSI---PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPS 219 (405)
T ss_pred CCCCCC--CccCHHHHHhhcc---ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCC
Confidence 863221 2345555554221 2458899998899999999974 67889999999999987432 110001
Q ss_pred C-CCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 319 F-GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 319 l-dls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+ .+.. .+..+++.|+-|.||.+-.-+|+++..++.++.+
T Consensus 220 ~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l 260 (405)
T PRK09148 220 VLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAAL 260 (405)
T ss_pred hhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHH
Confidence 1 1111 1234678999999995312279988766655444
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-11 Score=135.71 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+.++.+.+|++||++. ....|+|+|.|+..++.+. .++||+||+.-+.|-+.+..+ .-.|++++++...
T Consensus 204 ~G~I~eAq~~aA~~fgA~~---t~FlvNGST~gn~a~i~a~-~~~gd~Vlv~RN~HKSv~~al----~L~ga~Pvyl~P~ 275 (755)
T PRK15029 204 TGAFGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKSIEQGL----ILTGAKPVYMVPS 275 (755)
T ss_pred CcHHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH----HHcCCeEEEeccc
Confidence 4678899999999999974 5778999999999999887 689999888765554355553 3469999999755
Q ss_pred CCc----cccC-----HHHHHHHHHhcCcC----CCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC--
Q 006746 249 WPR----LRIN-----SEKLRKMVVSKGKK----KKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG-- 312 (632)
Q Consensus 249 ~~~----~~i~-----~~~l~~~i~~~~~~----~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~-- 312 (632)
++. +.++ ++.|+++|...... .+++++++++.. +.-|+.++++ |+++|+++|+.++||.|+.+
T Consensus 276 ~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 276 RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred ccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence 422 2344 89999999754311 134456666665 5799999999 99999999999999998665
Q ss_pred CCC--C---CCCC--C-CCCCCc-EEEEccccccCCCCCceEEEEEeCC
Q 006746 313 PKD--M---DSFG--L-SLVRPD-FLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 313 g~~--m---~~ld--l-s~~~~D-f~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
+.. + ..+. - ...++| +++-|.||+++. -+....|-|+.+
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~ 402 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREG 402 (755)
T ss_pred ccCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCC
Confidence 110 0 1120 0 114788 999999998875 667777777543
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-11 Score=132.58 Aligned_cols=349 Identities=12% Similarity=0.107 Sum_probs=200.2
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+.+++.+.+... + . . +. +....+...+..+++.
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~----~---~-------~~------~~~~~~~~~~la~~l~ 95 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRL----D----H---V-------IF------AGFTHEPAERLAQRLV 95 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhC----C----C---c-------cc------cccCCHHHHHHHHHHH
Confidence 57889997644 555677787766544321 0 0 0 00 0001233346667777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CC-----CCCC-eEE-EeccccchhhHHHHHHHHhc-------C--CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PF-----MSVK-NLL-TVYDYESEAVEAMIRTSEKR-------G--ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~-----~~gd-~il-t~~d~~s~~v~~~~~~a~~~-------G--~~v~ 243 (632)
+++... -..|.|++++|+|+..+.+-- .+ ++|+ +|+ ....||.....++. ..... + ..+.
T Consensus 96 ~~~p~~--~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls-~~~~~~~~~~~~~~~~~~~ 172 (423)
T PRK05964 96 ALTPGG--LDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMS-VGDRGGMHALYTPLLFEQV 172 (423)
T ss_pred HhCCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHh-cCCCccccccccCcCCCCE
Confidence 776422 227999999999988765532 11 1344 465 45678875444432 11110 0 1233
Q ss_pred EEeccCCc-cccCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 244 SAEFSWPR-LRINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 244 ~v~~~~~~-~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
.+++...+ ...+.+++++.|.+.. +.+..|++.- ++...|.+.| ++ +.++|+++|+++++|-+|.. |..
T Consensus 173 ~~~~~~~d~~~~~~~~l~~~l~~~~---~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~ 249 (423)
T PRK05964 173 TAPFPPDGYEQATLDALEALLEKHA---GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRT 249 (423)
T ss_pred EeCCCcchhHHHHHHHHHHHHHhCC---CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC
Confidence 44442111 0112677888786432 3455555554 6777898886 77 78999999999999998752 311
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
+...+.....||+++++ |.+|. + ..+|+++.+++.++.+.+....+. ++
T Consensus 250 G~~~a~~~~~v~pDi~~~~--K~l~g-G~~p~~av~~~~~i~~~~~~~~~~~~---------~~---------------- 301 (423)
T PRK05964 250 GTLFACEQAGVSPDIMCLS--KGLTG-GYLPLAATLCTAEIFEAFYSDDRAKA---------FM---------------- 301 (423)
T ss_pred cchhHHHhcCCCCCeeeee--hhhhc-CcccceEEEEcHHHHHhhhcCCcccc---------cc----------------
Confidence 11112233478998877 96653 3 247888888887765532100000 00
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC 472 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~ 472 (632)
..+| |. .|.....+. .++|+.+.+. .+.++++.
T Consensus 302 ------~~~T--~~------------~np~~~aaa------------------------~a~l~~l~~~---~~~~~~~~ 334 (423)
T PRK05964 302 ------HSPS--YT------------ANPLACAAA------------------------NASLDLFEDE---PVLERVAA 334 (423)
T ss_pred ------cCCC--CC------------cCHHHHHHH------------------------HHHHHHHHhc---CHHHHHHH
Confidence 0111 10 011111222 1667766643 46788899
Q ss_pred HHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHH
Q 006746 473 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 473 L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
+.++|++.|.++.. .|.+. + . ...|.++.+.+.+.+... ....+.+.+.++||.++..
T Consensus 335 ~g~~l~~~l~~l~~-----~~~i~---~-v-rg~Gl~~~i~l~~~~~~~-~~~~l~~~l~~~Gv~v~~~----------- 392 (423)
T PRK05964 335 LSAGLAEGLEPFRD-----LPGVA---D-V-RVLGAIGAVELDRPVLER-DGPALRAFALERGVLLRPL----------- 392 (423)
T ss_pred HHHHHHHHHHhhcc-----CCCeE---E-e-ecccEEEEEEeccCcchh-HHHHHHHHHHHCCeEEEec-----------
Confidence 99999999888721 24331 1 1 235778888886532100 1334555555678877421
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ .+||+++++++|.+||+++++.+++.|++
T Consensus 393 -----------------------------~-~~lR~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 393 -----------------------------G-NTIYLMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred -----------------------------C-CEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence 1 48999999999999999999999998753
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=128.20 Aligned_cols=219 Identities=14% Similarity=0.127 Sum_probs=145.6
Q ss_pred HHHHhhccCcCC-CCceEeecC---CCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhH
Q 006746 95 QIRAKEYYQLSL-SNHTCLDYF---GIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESG 170 (632)
Q Consensus 95 ~iR~~ef~~L~~-~~~vyLD~a---g~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~ 170 (632)
.+++.-|..+.+ .+.+|+|.- |++.++..|+.++..-.+ . |+...
T Consensus 5 ~l~~~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~--------~---------------------Y~~~~-- 53 (431)
T cd00617 5 ALKEAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDE--------A---------------------YAGSK-- 53 (431)
T ss_pred HHHHcCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCC--------c---------------------cCCCC--
Confidence 444444433322 467887764 445888888888653100 0 22111
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
-+.+.|+.|++++|.+ .+++|+++|+|+.++..++ .++||.|+....+.+ . .......|++++.++++..
T Consensus 54 g~~~Leeaia~~~g~~----~vv~t~~Gt~Al~la~~al-~~pGD~V~~~~~f~~--~---~~~i~~~Ga~pv~v~i~~~ 123 (431)
T cd00617 54 SFYDLEDAVQDLFGFK----HIIPTHQGRGAENILFSIL-LKPGRTVPSNMHFDT--T---RGHIEANGAVPVDLVIDEA 123 (431)
T ss_pred CHHHHHHHHHHHHCCC----eEEEcCCHHHHHHHHHHHh-CCCCCEEccCCcccc--h---HHHHHhCCCEeEEEecccc
Confidence 1247899999999985 5899999999999999988 789998753333332 2 1233567999999988632
Q ss_pred ---------ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccchH----HHHHHhhCCcEEEEeccccCCCC-
Q 006746 251 ---------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL----WMRIAQENDWHILIDACALGPKD- 315 (632)
Q Consensus 251 ---------~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~- 315 (632)
.+.+|+++|+++|++++ ..+++++++...+|.+ |..++.+ |.++|+++|++++.|+|++...-
T Consensus 124 ~~~~~~~pf~gniD~e~Le~~I~~~~--~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~ 201 (431)
T cd00617 124 HDAQELIPFKGNIDVAKLEKLIDEVG--AENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAY 201 (431)
T ss_pred cccccccCCCCCcCHHHHHHHhCccc--CCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhh
Confidence 35599999999998642 2357899999999987 8888654 57899999999999999764200
Q ss_pred --------CCCCCCCC------CCCcEEEEccccccCCCCCceEEEEEeCC-CccccC
Q 006746 316 --------MDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILV 358 (632)
Q Consensus 316 --------m~~ldls~------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~-~~~~L~ 358 (632)
.....+.+ ...|.+.+|+||-++. |. -|++..+++ ++++++
T Consensus 202 ~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~-~~-GG~i~~~d~~l~~~~~ 257 (431)
T cd00617 202 FIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLV-NI-GGFLALRDDELYEEAR 257 (431)
T ss_pred hhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCC-cc-ceEEEeCcHHHHHHHH
Confidence 00111100 1369999999996554 43 245666653 555444
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-11 Score=128.40 Aligned_cols=174 Identities=11% Similarity=0.130 Sum_probs=118.6
Q ss_pred HHHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 173 SAMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 173 ~~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
.+.|+.|+++++ ++++ .|++|+|+++++.+++.++ ..+|+ +|++. ..|+ .....++..|+++
T Consensus 69 ~~Lr~aia~~~~~~~~~~~~v~~~--~I~it~Ga~~al~~~~~~~-~~~g~~~Vlv~~P~y~-----~~~~~~~~~g~~~ 140 (374)
T PRK02610 69 EALKQAIAEYVNESAAGSSQITPA--NISVGNGSDELIRSLLIAT-CLGGEGSILVAEPTFS-----MYGILAQTLGIPV 140 (374)
T ss_pred HHHHHHHHHHhCccccccCCCCHH--HEEEcCChHHHHHHHHHHH-cCCCCCeEEEcCCChH-----HHHHHHHHcCCEE
Confidence 478999999988 6655 7999999999999877665 34565 66543 2333 3345567889999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHh-hCCcEEEEecccc--CCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQ-ENDWHILIDACAL--GPKDMDS 318 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~-~~g~~vlvDaaq~--~g~~m~~ 318 (632)
+.++.+..+..+++++|++++.+.. .++++++.++..+|+||..++.+ +-++++ .+++++++|-+-. ....+ .
T Consensus 141 ~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~-~ 217 (374)
T PRK02610 141 VRVGRDPETFEIDLAAAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTL-V 217 (374)
T ss_pred EEecCCcccCCCCHHHHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccch-H
Confidence 9998864346789999999886410 12468898888999999999998 655543 1489999998642 12110 0
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
-.+...+-=+++.||-|.||.+.--+|+++..++.++.+
T Consensus 218 ~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l 256 (374)
T PRK02610 218 GELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVL 256 (374)
T ss_pred HHHhcCCCEEEEEecchhccCcccceeeeecCHHHHHHH
Confidence 111111112778999999986434468888766655444
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-11 Score=129.34 Aligned_cols=171 Identities=10% Similarity=0.067 Sum_probs=116.8
Q ss_pred HHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ | ++++ ..|+.|+|+++|+.+++..+ ..+||+|++. ..|+. ....++..|++++.++
T Consensus 72 ~lr~aia~~~~~~~g~~~~~~-~~I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~-----~~~~~~~~g~~~~~v~ 144 (388)
T PRK07366 72 DFREAAAQWYEQRFGLAVDPE-TEVLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPS-----HAGGVYLAGGQIYPMP 144 (388)
T ss_pred HHHHHHHHHHHHhhCCcCCCc-CeEEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcc-----hHHHHHhcCCEEEEEE
Confidence 5777788776 4 4543 15999999999999999988 5789997653 34432 2344567899999999
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEecccc----CCCC-C
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACAL----GPKD-M 316 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq~----~g~~-m 316 (632)
.+.. ...++.+++.+.+.++ ++++.++..+|+||..++.+ + +++|+++|+++++|-+-. .+.. .
T Consensus 145 ~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~ 218 (388)
T PRK07366 145 LRAENDFLPVFADIPTEVLAQ------ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEP 218 (388)
T ss_pred CCCccCCCCCHHHHHHhhccc------ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCC
Confidence 8733 2346778887766543 47888888999999999986 4 567899999999997521 1210 0
Q ss_pred CC-CCCCCCC-CcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 317 DS-FGLSLVR-PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 317 ~~-ldls~~~-~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.+ +++.... .-+++.||-|.||.+---+|+++..++.++.+
T Consensus 219 ~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l 261 (388)
T PRK07366 219 PSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQAL 261 (388)
T ss_pred CChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHH
Confidence 11 1221111 23678899999986434467777665554433
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-11 Score=127.30 Aligned_cols=170 Identities=11% Similarity=0.100 Sum_probs=117.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCC-
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWP- 250 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~- 250 (632)
.+.|+.|+++++++++ .|++|+|+++++.+++..+ .++||+|++.. .|.. . ...++..|++++.++++..
T Consensus 68 ~~lr~~ia~~~~~~~~--~I~it~G~~~al~~~~~~~-~~~gd~V~v~~P~y~~--~---~~~~~~~g~~~~~~~l~~~~ 139 (357)
T PRK14809 68 ADLTAALADRWDVSPE--QVWLANGGDGALDYLARAM-LDPGDTVLVPDPGFAY--Y---GMSARYHHGEVREYPVSKAD 139 (357)
T ss_pred HHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCChHH--H---HHHHHHcCCeEEEEecccCc
Confidence 4789999999999876 7999999999999999998 68999976543 3331 1 1234567999999988532
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccC-CCCCCCCCC-CCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALG-PKDMDSFGL-SLVR 325 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~-g~~m~~ldl-s~~~ 325 (632)
+..++.+++.+.+. +++++.++..+|+||..+|.+ +.++++.. +.++++|-+... ..+-..+.. ...+
T Consensus 140 ~~~~~~~~~~~~~~-------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~ 212 (357)
T PRK14809 140 DFEQTADTVLDAYD-------GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERD 212 (357)
T ss_pred CCCcCHHHHHHhhc-------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCC
Confidence 34456777666542 247888999999999999998 77766543 788999987431 110011111 1111
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
-=+++.||-|.||.+--.+|+++..++.++.+
T Consensus 213 ~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~ 244 (357)
T PRK14809 213 DVAVLRTFSKAYGLAGLRLGYAVVPEEWADAY 244 (357)
T ss_pred CEEEEecchhHhcCcchhheeeecCHHHHHHH
Confidence 23778899999985222368888877665544
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-11 Score=124.80 Aligned_cols=164 Identities=11% Similarity=0.075 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
..+...++|+.+=|-- .-+.|+++..|+-+++..+ .++||+|+....-....++-+....++.|++|+++..+
T Consensus 63 T~~vlE~RiAaLEGG~----aa~a~aSG~AA~~~ai~~l-a~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~-- 135 (426)
T COG2873 63 TTDVLEERIAALEGGV----AALAVASGQAAITYAILNL-AGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD-- 135 (426)
T ss_pred hHHHHHHHHHHhhcch----hhhhhccchHHHHHHHHHh-ccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC--
Confidence 3446678888876643 3456788889999888888 68999988543222235666666679999999999754
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL 329 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~ 329 (632)
+++.++++|+++| |+|.+--..|+.+...|++ |.++||++|++++||-+-.-|.-+.|++ ++.|.+
T Consensus 136 ----d~~~~~~aI~~nT------kavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~---hGADIV 202 (426)
T COG2873 136 ----DPENFEAAIDENT------KAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIE---HGADIV 202 (426)
T ss_pred ----CHHHHHHHhCccc------ceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhh---cCCCEE
Confidence 5789999999876 8999999999999999999 9999999999999999766664334554 699999
Q ss_pred EEccccccCCCCCceEEEEEeCCCc
Q 006746 330 ICSFYQIFGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 330 ~~S~hK~~G~~P~G~G~L~Vr~~~~ 354 (632)
+-|.-|+.|.+.+.+|.++|.-...
T Consensus 203 vHS~TK~igGhGt~iGG~iVD~G~F 227 (426)
T COG2873 203 VHSATKYIGGHGTAIGGVIVDGGKF 227 (426)
T ss_pred EEeecccccCCccccceEEEeCCcc
Confidence 9999998886677889998876544
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=124.68 Aligned_cols=170 Identities=14% Similarity=0.221 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHcC-CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLN-ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~-a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
..+.|+.++++.+ .+++ .|+.++|+++.+.++.+.+ ..+||++++..--.+ .+ ...++..|++++.++.+ +
T Consensus 59 ~~~l~~a~a~~~~~~~~~--~V~~gnGsde~i~~l~~~~-~~~gd~vl~~~Ptf~-~Y---~~~a~~~g~~~~~v~~~-~ 130 (356)
T COG0079 59 YRELRAALAEYYGVVDPE--NVLVGNGSDELIELLVRAF-VEPGDTVLIPEPTFS-MY---EIAAQLAGAEVVKVPLK-E 130 (356)
T ss_pred HHHHHHHHHHHhCCCCcc--eEEEcCChHHHHHHHHHHh-hcCCCEEEEcCCChH-HH---HHHHHhcCCeEEEeccc-c
Confidence 3588999999999 6655 6888999999999999999 688999876542222 12 23567889999999987 4
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEecc--ccCCCCCCCCCCCCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDAC--ALGPKDMDSFGLSLVR 325 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaa--q~~g~~m~~ldls~~~ 325 (632)
..+|.+.+.+.+.++ ++|+.++.-+|+||..++.+ +.+++... +++|+||-| -+.+. ..+.+-. .
T Consensus 131 -~~~d~~~~~~~~~~~------~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~--~~~~l~~-~ 200 (356)
T COG0079 131 -FRLDLDAILAAIRDK------TKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPE--SSLELLK-Y 200 (356)
T ss_pred -cccCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCc--hhhhhcc-C
Confidence 778999999988864 48999999999999999998 77776543 889999986 44453 2333333 3
Q ss_pred Cc--EEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 326 PD--FLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 326 ~D--f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
.+ +++=||-|.||.+---+|+++.+++.++.|+.
T Consensus 201 ~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~ 236 (356)
T COG0079 201 PPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNK 236 (356)
T ss_pred CCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHH
Confidence 44 78889999999753446888888887766543
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=126.07 Aligned_cols=168 Identities=8% Similarity=0.114 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.|+++++++++ .|++|+|+++++.+++..+ .+|+.|++. -.|+ .....++..|++++.++.+...
T Consensus 60 ~~Lr~aia~~~~v~~~--~I~it~G~~~~i~~~~~~l--~~g~~vlv~~P~y~-----~~~~~~~~~g~~~~~v~~~~~~ 130 (360)
T PRK07392 60 RELRLALAQHHQLPPE--WILPGNGAAELLTWAGREL--AQLRAVYLITPAFG-----DYRRALRAFGATVKELPLPLDQ 130 (360)
T ss_pred HHHHHHHHHHhCcChh--hEEECCCHHHHHHHHHHHh--CCCCeEEEECCCcH-----HHHHHHHHcCCeEEEEeccccc
Confidence 4789999999999876 7999999999999999986 357786653 2333 3345667799999999986332
Q ss_pred cc----cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecccc--CCCC-CCC-CC-C
Q 006746 252 LR----INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACAL--GPKD-MDS-FG-L 321 (632)
Q Consensus 252 ~~----i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~--~g~~-m~~-ld-l 321 (632)
+. .+.+++++.. +++++++++..+|+||..++.+ +.++++++++ +++|-+-. .... ..+ +. +
T Consensus 131 ~~~~~~~~~~~~~~~~-------~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~ 202 (360)
T PRK07392 131 PSPGLTLRLQTLPPQL-------TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCL 202 (360)
T ss_pred CCcccccCHHHHHHhc-------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHh
Confidence 21 3455544332 1358999999999999999999 9999999986 66698632 1100 001 11 1
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
....-=+++.|+-|.||.+---+|+++..++.++.+
T Consensus 203 ~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~ 238 (360)
T PRK07392 203 AEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRW 238 (360)
T ss_pred hcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHH
Confidence 111113788899999986334568888766555443
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=126.34 Aligned_cols=176 Identities=10% Similarity=0.085 Sum_probs=114.4
Q ss_pred HHHHHHHHHc----CCCCCCc-cEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDFL----NISENDY-GMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey-~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
..|+.|++++ |.+-+.. .|++|+|+++|+.+++..+ ..+||.|++. ..|+. ....++..|++++.+++
T Consensus 75 ~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~-----~~~~~~~~g~~~~~v~~ 148 (403)
T PRK08636 75 KLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAI-TNPGDVAIVPDPAYPI-----HSQAFILAGGNVHKMPL 148 (403)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHh-CCCCCEEEEcCCCCcc-----hHHHHHhcCCEEEEEec
Confidence 5666676665 6432222 5999999999999999998 6889997754 34442 23446678999999988
Q ss_pred cC-CccccCHHHHHHHHHhcCc-CCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 248 SW-PRLRINSEKLRKMVVSKGK-KKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 248 ~~-~~~~i~~~~l~~~i~~~~~-~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
+. .+..++.+++.+.+.+.-+ .+.+++++.++..+|+||..+|.+ |+++|+++++++|+|-+-.- +....
T Consensus 149 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~ 228 (403)
T PRK08636 149 EYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTP 228 (403)
T ss_pred cccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCC
Confidence 52 3346887765444432110 023468888887799999999985 56778999999999986321 11001
Q ss_pred C-CCCCCC-CCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 318 S-FGLSLV-RPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 318 ~-ldls~~-~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
+ ..+... +.-+++.|+-|.||.+---+|+++..+++++
T Consensus 229 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~ 268 (403)
T PRK08636 229 SILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVG 268 (403)
T ss_pred ChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHH
Confidence 1 112111 2235578999999864344677766555443
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-10 Score=125.97 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=166.4
Q ss_pred cEEEeCCHHHHHHHHHhhCC-C----CCC-CeEE-EeccccchhhHHHHHHHHhcCCEEEEEecc--CCc-cccCHHHHH
Q 006746 191 GMVFTANRTSAFKLLAESYP-F----MSV-KNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFS--WPR-LRINSEKLR 260 (632)
Q Consensus 191 ~vvft~naT~al~lv~~sl~-~----~~g-d~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~--~~~-~~i~~~~l~ 260 (632)
.++|++++++|...++.... + ++| ++|+ ....||......+. .....+.+....|.. .+. ...+.++++
T Consensus 95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 173 (395)
T PRK03715 95 KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMS-ASGKPGWDTIFAPQVPGFPKAELNDIASVE 173 (395)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHh-hcCCcccccCCCCCCCCceeeCCchHHHHH
Confidence 69999999999888776542 1 123 3455 45567764443321 111111111111111 000 013578888
Q ss_pred HHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEc
Q 006746 261 KMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICS 332 (632)
Q Consensus 261 ~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S 332 (632)
+.+.++ +.+|++..+....|...| ++ +.++|+++|+++++|-+|.+ |.. +...+.....||+++++
T Consensus 174 ~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~g 247 (395)
T PRK03715 174 KLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLG 247 (395)
T ss_pred HHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeeh
Confidence 877543 578899999999999988 88 89999999999999998773 210 10111122368988776
Q ss_pred cccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhh
Q 006746 333 FYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIE 412 (632)
Q Consensus 333 ~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~ 412 (632)
|.+|. .--+|++.++++... +.+...+ +| |.
T Consensus 248 --K~lg~-G~p~~av~~~~~i~~-~~~~~~~-------------------------------------~T--~~------ 278 (395)
T PRK03715 248 --KGIGG-GVPLAALLAKAEVAV-FEAGDQG-------------------------------------GT--YN------ 278 (395)
T ss_pred --hhhhC-CcceEEEEEcccccc-ccCCCcC-------------------------------------CC--CC------
Confidence 86552 123788888887641 1111000 11 00
Q ss_pred hhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCC
Q 006746 413 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN 492 (632)
Q Consensus 413 ~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~ 492 (632)
| |.....+. .++|+.+.+ +.+.++++.+.++|++.|+++.... +.
T Consensus 279 ----g--~pl~~aaa------------------------la~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~--~i 323 (395)
T PRK03715 279 ----G--NPLMTAVG------------------------VAVISQLLA---PGFLEGVRARGEYLKEKLLELSEER--GL 323 (395)
T ss_pred ----C--CHHHHHHH------------------------HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcC--Cc
Confidence 0 00001111 156777654 4567889999999999998873221 11
Q ss_pred CcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhC---CcEEccCccCChHHHhHHHHhhhhhhhhhhccccc
Q 006746 493 ALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRE---NISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS 569 (632)
Q Consensus 493 p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~---gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 569 (632)
..| .-+|.++++.+.+. ....+.+.+.+. ||.++.
T Consensus 324 ~~v--------rG~Glm~~i~l~~~-----~~~~~~~~~~~~~~~Gi~~~~----------------------------- 361 (395)
T PRK03715 324 EGE--------RGEGLLRALLLGKD-----IGPQIVEKARDMQPDGLLLNA----------------------------- 361 (395)
T ss_pred CeE--------EcceeEEEEEecCc-----hHHHHHHHHHhccCCCEEEee-----------------------------
Confidence 111 13577888877542 123455555555 777641
Q ss_pred cccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 570 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 570 ~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+||+++.+..|.+||+++++.|++.++.
T Consensus 362 -----------~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~ 393 (395)
T PRK03715 362 -----------PRPNLLRFMPALNVTTEEIDQMIAMLRSVLDK 393 (395)
T ss_pred -----------cCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 02258999999999999999999999988753
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-10 Score=127.51 Aligned_cols=172 Identities=16% Similarity=0.164 Sum_probs=118.7
Q ss_pred HHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEE
Q 006746 174 AMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 174 ~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
+.|+.|+++++ ++++ .|+.|+|+++++.+++..+ ..+||.|++.. .|+. ... .+....|++++.
T Consensus 90 ~LR~aiA~~l~~~~~~~~~v~~~--~Iiit~Ga~~al~~l~~~l-~~pGd~Vlv~~P~Y~~-~~~---~~~~~~g~~~v~ 162 (468)
T PLN02450 90 AFKNALAEFMSEIRGNKVTFDPN--KLVLTAGATSANETLMFCL-AEPGDAFLLPTPYYPG-FDR---DLKWRTGVEIVP 162 (468)
T ss_pred HHHHHHHHHHHHhhCCCCCcChH--HeEEccChHHHHHHHHHHh-CCCCCEEEECCCCCCc-hHH---HHhhcCCcEEEE
Confidence 57888888875 4554 6999999999999999998 68999987653 4442 111 122257999999
Q ss_pred EeccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCC
Q 006746 245 AEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKD 315 (632)
Q Consensus 245 v~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~ 315 (632)
++.+. ....++.+++++++.+..+...+++++.++..+|+||..+|.+ |++.|+++|+++|+|-+-.. +..
T Consensus 163 v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~ 242 (468)
T PLN02450 163 IHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPG 242 (468)
T ss_pred EecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCC
Confidence 98753 3445788999988865321123568888888999999999876 46778899999999986431 211
Q ss_pred CCC-CCC---------CCCCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 316 MDS-FGL---------SLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 316 m~~-ldl---------s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
..+ +.+ ....-=+++.|+-|.||.+---+|+++..++
T Consensus 243 ~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~ 289 (468)
T PLN02450 243 FVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDE 289 (468)
T ss_pred cccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCH
Confidence 001 111 0112237889999988864445788887654
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-10 Score=125.51 Aligned_cols=171 Identities=11% Similarity=0.074 Sum_probs=119.7
Q ss_pred HHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ | ++++ .+|++|+|+++++.+++..+ ..+||+|++. ..|.. . ...++..|++++.++
T Consensus 74 ~lr~aia~~~~~~~g~~~~~~-~~i~it~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~-~----~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 74 FLKEAAADFYKREYGVTLDPE-TEVAILFGGKAGLVELPQCL-MNPGDTILVPDPGYPD-Y----LSGVALARAQFETMP 146 (389)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-ccEEEcCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcc-h----HHHHHhcCCEEEEee
Confidence 6777777776 5 4443 15899999999999999988 5899997754 34442 1 234567899999999
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
.+.. +..++.+++++.+.++ ++++.++..+|+||..+|.+ |+++|+++++++++|-+-.. +....
T Consensus 147 ~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~ 220 (389)
T PRK08068 147 LIAENNFLPDYTKIPEEVAEK------AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPV 220 (389)
T ss_pred cccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCc
Confidence 8633 3457889998888643 47888887889999999985 56678999999999987421 11000
Q ss_pred C-CCCC-CCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 318 S-FGLS-LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 318 ~-ldls-~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+ +.+. ..+..+++.|+-|.||.+-.-+|+++..++.++.+
T Consensus 221 s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l 262 (389)
T PRK08068 221 SFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAI 262 (389)
T ss_pred ChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHH
Confidence 1 1111 12345888999999995322278888776655444
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-10 Score=124.39 Aligned_cols=172 Identities=18% Similarity=0.195 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHcCC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 170 GLESAMKKRIMDFLNI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
++-+.+.+...+..|. +++ .+|+.|.++++|+.++..++ ..+||+|+++ -.|++ ... ..+..|++++.++
T Consensus 69 ~LReaia~~~~~~~~~~~~~~-~eiivt~Ga~~al~~~~~a~-~~pGDeVlip~P~Y~~--y~~---~~~~~gg~~v~v~ 141 (393)
T COG0436 69 ELREAIAEKYKRRYGLDVDPE-EEIIVTAGAKEALFLAFLAL-LNPGDEVLIPDPGYPS--YEA---AVKLAGGKPVPVP 141 (393)
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CeEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCCcC--HHH---HHHhcCCEEEEEe
Confidence 3444444444555453 333 25999999999999999999 7999997654 46654 222 3455799999999
Q ss_pred ccCC--ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccc--cC--CC-C
Q 006746 247 FSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACA--LG--PK-D 315 (632)
Q Consensus 247 ~~~~--~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq--~~--g~-~ 315 (632)
.+.+ +..++.++|+++++++| +++++..-+|+||..++- + |+++|+++|++++.|-+- +. +. -
T Consensus 142 l~~~~~~f~~d~~~l~~~i~~kt------k~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~ 215 (393)
T COG0436 142 LDEEENGFKPDLEDLEAAITPKT------KAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEH 215 (393)
T ss_pred CCcCccCCcCCHHHHHhhcCccc------eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCc
Confidence 7532 57789999999998754 899999999999999984 4 778899999999999852 22 21 0
Q ss_pred CCCCCCCCC-CCcEEEEccccccCCCCCceEEEEEe-CCCc
Q 006746 316 MDSFGLSLV-RPDFLICSFYQIFGENPSGFGCLFVK-KSTV 354 (632)
Q Consensus 316 m~~ldls~~-~~Df~~~S~hK~~G~~P~G~G~L~Vr-~~~~ 354 (632)
...+.+... ..=+.+-|+-|.|+++---+|.++.. +..+
T Consensus 216 ~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~ 256 (393)
T COG0436 216 PSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELI 256 (393)
T ss_pred CCHhhcCCCcceEEEEecccccccccccceeEeecChHHHH
Confidence 012222221 22356668999888654456888877 4443
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-10 Score=120.37 Aligned_cols=340 Identities=12% Similarity=0.105 Sum_probs=218.5
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch--hHHHHHHHHHHHHHcCCCCCCccE
Q 006746 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~--~~~~~~~R~~ia~~l~a~~~ey~v 192 (632)
|+-...|..|++++-..+... |--+-|..++ ||+-+ ..+.+-+.++.+++||++- .=
T Consensus 33 ASEN~~S~aV~~A~gS~ltnK-----------------YAEGyPgkRy-YgGce~VD~vE~laierak~LFga~~---an 91 (413)
T COG0112 33 ASENFTSPAVMEAQGSDLTNK-----------------YAEGYPGKRY-YGGCEYVDEVEELAIERAKKLFGAEY---AN 91 (413)
T ss_pred eccccCCHHHHHHHhhhhhhc-----------------cccCCCCccc-cCCCeeHHHHHHHHHHHHHHHhCCCc---cc
Confidence 666789999999976554321 1123444443 55543 5677788999999999963 33
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEE-ec---cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCc
Q 006746 193 VFTANRTSAFKLLAESYPFMSVKNLLT-VY---DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK 268 (632)
Q Consensus 193 vft~naT~al~lv~~sl~~~~gd~ilt-~~---d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~ 268 (632)
|=--|++.|...+..++ .+|||.|+- +. .|-+-.. . ..+.-+. .+++..+++..++.||.|++++.+.+.+
T Consensus 92 VQPhSGs~AN~av~~Al-l~pGDtimgm~l~~GGHltHg~-~-v~~sG~~-~~~v~Y~vd~et~~IDyD~~~k~a~e~k- 166 (413)
T COG0112 92 VQPHSGSQANQAVYLAL-LQPGDTIMGLDLSHGGHLTHGS-P-VNFSGKL-FNVVSYGVDPETGLIDYDEVEKLAKEVK- 166 (413)
T ss_pred cCCCCchHHHHHHHHHH-cCCCCeEecccCCCCCcccCCC-C-CCcccee-EEeEecccccccCccCHHHHHHHHHHhC-
Confidence 34458888988898888 799999863 22 2322100 0 1122122 5667778887789999999999988753
Q ss_pred CCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccc-ccCCCC
Q 006746 269 KKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQ-IFGENP 341 (632)
Q Consensus 269 ~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~-----~m~~ldls~~~~Df~~~S~hK-~~G~~P 341 (632)
++|++.-.- ..-..+|++ +.++|.+.|+++++|+|+.+|. -..|+. .+|+++++.|| +.| |
T Consensus 167 ----PK~ii~G~S--aY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~----~AdvVTtTTHKTlrG--P 234 (413)
T COG0112 167 ----PKLIIAGGS--AYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP----HADVVTTTTHKTLRG--P 234 (413)
T ss_pred ----CCEEEECcc--ccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC----ccceEeCCcccCCCC--C
Confidence 566655332 233568899 8899999999999999987752 112444 27999999999 667 8
Q ss_pred CceEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcc
Q 006746 342 SGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLE 420 (632)
Q Consensus 342 ~G~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~ 420 (632)
.| |+++.++ +..++++...|-|. .|.|+
T Consensus 235 rG-G~Il~~~eel~kkin~aVFPg~--------------------------------------------------qggpl 263 (413)
T COG0112 235 RG-GIILTNDEELAKKINSAVFPGL--------------------------------------------------QGGPL 263 (413)
T ss_pred Cc-eEEEeccHHHHHHhhhhcCCcc--------------------------------------------------CCChH
Confidence 75 4555554 55555654332111 12233
Q ss_pred cchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECC
Q 006746 421 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGP 500 (632)
Q Consensus 421 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp 500 (632)
.--|.+.. -|+....+-+...-.+++..-++.|.+.|.+. |. +|.+-
T Consensus 264 ~HviAaka------------------------Va~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~------G~---~vvsG 310 (413)
T COG0112 264 MHVIAAKA------------------------VAFKEALEPEFKEYAKQVVKNAKALAEALKER------GF---KVVSG 310 (413)
T ss_pred HHHHHHHH------------------------HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc------CC---eEecC
Confidence 33455554 56666656677777888888888888888886 54 44443
Q ss_pred CCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCC
Q 006746 501 KIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580 (632)
Q Consensus 501 ~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 580 (632)
- --...+...+.+ +| +....+.+++++.||.+--- . .+.+. ...
T Consensus 311 g---TdnHl~lVDl~~-~~--~~Gk~ae~~L~~~~It~NKN-----------------~-----------iP~D~--~~p 354 (413)
T COG0112 311 G---TDNHLVLVDLRS-KG--LTGKKAEAALERAGITVNKN-----------------A-----------IPFDP--ESP 354 (413)
T ss_pred C---ccceEEEEEccc-CC--CCHHHHHHHHHHcCEeeccC-----------------C-----------CCCCC--CCC
Confidence 2 123455555552 22 77889999999999987310 0 01000 022
Q ss_pred CCCcEEEEccCCCCC----HHHHHHHHHHHHHhhhh
Q 006746 581 LGITVVTASLGYLAN----FEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 581 ~~~~~VRvSlg~~~t----~eDV~rlv~~l~~~l~~ 612 (632)
.-.+.||+...-.|+ ++|...+.+++.+.|+.
T Consensus 355 ~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 355 FVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred CCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 345688988766664 67788887777777664
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-10 Score=125.87 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=103.8
Q ss_pred HHHHHHHHHc----C---CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFL----N---ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l----~---a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.|++++ | ++++ +|++|+|+++|+.++...+..++||+|++. ..|+. + ...++..|++++.+
T Consensus 60 ~lr~~ia~~~~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~--~---~~~~~~~g~~~~~v 132 (357)
T TIGR03539 60 ELREAIVDWLERRRGVPGLDPT--AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPT--Y---EVGALLAGATPVAA 132 (357)
T ss_pred HHHHHHHHHHHHhcCCCCCCcC--eEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHH--H---HHHHHhcCCEEecc
Confidence 4455555555 3 5554 799999999999999887756899998764 35542 2 23356679887665
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-C---CCCC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-P---KDMD 317 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g---~~m~ 317 (632)
+ +.+. +.. .+++++.++..+|+||..+|.+ |+++|+++|+++++|.+... . ..+.
T Consensus 133 ~--------~~~~----l~~-----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 195 (357)
T TIGR03539 133 D--------DPTE----LDP-----VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVS 195 (357)
T ss_pred C--------Chhh----cCc-----cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCcc
Confidence 3 1122 221 1358899999999999999844 67788999999999997532 1 1011
Q ss_pred CCCCC----CCCCcEEEEccccccCCCCCc--eEEEEEeCCCcc
Q 006746 318 SFGLS----LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP 355 (632)
Q Consensus 318 ~ldls----~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~ 355 (632)
.++-. ...--+++.|+.|.||. | | +|.++..++.++
T Consensus 196 ~~~~~~~~~~~~~vi~~~S~SK~~~~-~-G~R~G~~i~~~~~~~ 237 (357)
T TIGR03539 196 ILDPRVCGGDHTGLLAVHSLSKRSNL-A-GYRAGFVAGDPALVA 237 (357)
T ss_pred ceecccCCCccccEEEEeccccccCC-C-ceeEEEEecCHHHHH
Confidence 12110 11224888999999985 3 6 588776555444
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-10 Score=119.87 Aligned_cols=171 Identities=9% Similarity=0.171 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CC-----CCCeEE-EeccccchhhHHHHHHHHhcCCEE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FM-----SVKNLL-TVYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~-----~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
+...+..++++++.+. + .|+||+++++|+.+++.... +. +.++|+ ....||. ...+.... .|...
T Consensus 81 ~~~~~la~~l~~~~~~--~--~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg-~~~~~~~~---~~~~~ 152 (396)
T PRK02627 81 EPQEELAEKLVELSGM--D--KVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHG-RTLATLSA---TGQPK 152 (396)
T ss_pred HHHHHHHHHHHhhcCC--C--EEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCc-ccHHHHHh---cCCcc
Confidence 4456777888888765 2 79999999999999888541 11 115565 4445664 22221111 11111
Q ss_pred E---EEeccCCcc----ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcc-ccc---hH-HHHHHhhCCcEEEEeccc
Q 006746 243 M---SAEFSWPRL----RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYP---YL-WMRIAQENDWHILIDACA 310 (632)
Q Consensus 243 ~---~v~~~~~~~----~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~-~~p---l~-i~~~a~~~g~~vlvDaaq 310 (632)
. ..+.. ++. ..|++++++++.+ +++++.+..+.+.+|. .+| ++ |.++|+++|+++++|-++
T Consensus 153 ~~~~~~~~~-~~~~~~~~~d~~~l~~~i~~------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~ 225 (396)
T PRK02627 153 YQEGFEPLV-EGFIYVPFNDIEALKAAITD------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQ 225 (396)
T ss_pred ccccCCCCC-CCceEeCCCCHHHHHHhcCC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 1 11111 100 1178899888854 3588888888889995 443 56 788999999999999987
Q ss_pred c-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 311 L-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 311 ~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
. ++.. +..++.....+|+++ +-|.+| +.-.+|+++.+++.++.+.
T Consensus 226 ~g~g~~g~~~~~~~~~~~pdi~t--~sK~~~-~G~rig~~~~~~~~~~~~~ 273 (396)
T PRK02627 226 TGMGRTGKLFAYQHYGIEPDIMT--LAKGLG-GGVPIGAVLAKEKVADVFT 273 (396)
T ss_pred cCCCccCceeeehhcCCCCCEEE--Ecchhh-CCcccEEEEEcHHHHhccC
Confidence 6 3321 112222334678765 459877 2234899998887665553
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-10 Score=122.62 Aligned_cols=170 Identities=13% Similarity=0.172 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHHH-----HHhcCCEEEEEe
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIRT-----SEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~~-----a~~~G~~v~~v~ 246 (632)
+.++.+++.+...++ ..++|++++|+|...+..... +..+++|++ ...||......+... .+..+..+..++
T Consensus 70 ~~~~~la~~l~~~~~-~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (375)
T PRK04260 70 SLQEEVAQKLIGDKD-YLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFS 148 (375)
T ss_pred HHHHHHHHHHhcCcC-CEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeE
Confidence 456667766544432 246899999999996655431 234556664 567776443333111 000111111111
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--CCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--MDS 318 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~~ 318 (632)
.. + ..|.+++++.+.+ ++.+|++..+.+.+|...| ++ +.++|+++|+++++|.++.. +.. +..
T Consensus 149 ~~-~--~~dl~~l~~~l~~------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~ 219 (375)
T PRK04260 149 YA-I--FNDLNSVKALVNK------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYA 219 (375)
T ss_pred Ee-C--CCCHHHHHHhcCC------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhh
Confidence 10 0 1367888887753 3589999999999999876 67 89999999999999998753 211 111
Q ss_pred CCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCcccc
Q 006746 319 FGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPIL 357 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L 357 (632)
.......||++ ++-|.+| | .-+|++.++++..+.+
T Consensus 220 ~~~~~~~pdi~--t~sK~l~--~G~~ig~~~~~~~~~~~~ 255 (375)
T PRK04260 220 FEHYGIEPDIF--TLAKGLA--NGVPVGAMLAKSSLGGAF 255 (375)
T ss_pred hHhhCCCCCEE--Eeccccc--CCcceEEEEEcHHHHhhc
Confidence 11223578954 7899777 3 1279999988765544
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-10 Score=123.41 Aligned_cols=169 Identities=12% Similarity=0.087 Sum_probs=115.4
Q ss_pred HHHHHHHHHc----CC---CCCCccEEEeCCHHHHHHHHHhhCCCCC---CCeEEEec-cccchhhHHHHHHHHhcCCEE
Q 006746 174 AMKKRIMDFL----NI---SENDYGMVFTANRTSAFKLLAESYPFMS---VKNLLTVY-DYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 174 ~~R~~ia~~l----~a---~~~ey~vvft~naT~al~lv~~sl~~~~---gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v 242 (632)
+.|+.|++++ |. +++ ..|++|+|+++|+.+++..+ ..+ ||+|++.. .|+ .....++..|+++
T Consensus 69 ~lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l-~~~~~~gd~vlv~~P~y~-----~~~~~~~~~g~~~ 141 (396)
T PRK09147 69 ALREAIAAWLERRYGLPALDPA-TQVLPVNGSREALFAFAQTV-IDRDGPGPLVVCPNPFYQ-----IYEGAALLAGAEP 141 (396)
T ss_pred HHHHHHHHHHHHHhCCCcCCcc-ceEEECCChHHHHHHHHHHH-cCCCCCCCEEEEcCCCcc-----chHHHHHhcCCEE
Confidence 5677777665 63 432 26999999999999999998 577 77877542 333 2234456789999
Q ss_pred EEEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC---CC
Q 006746 243 MSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG---PK 314 (632)
Q Consensus 243 ~~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~---g~ 314 (632)
+.+|.+.. +..++++++++.+.++ ++++.++..+|+||..++.+ ++++|+++++++|+|-+-.- ..
T Consensus 142 ~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 215 (396)
T PRK09147 142 YFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDE 215 (396)
T ss_pred EEeccCccccCccCHHHHHHHHhhc------cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCC
Confidence 99998633 2368999998877653 48888999999999999765 56778899999999986332 10
Q ss_pred CCCCCC-C---CCCCC-----cEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 315 DMDSFG-L---SLVRP-----DFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 315 ~m~~ld-l---s~~~~-----Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
...+.. + ...+. -+++.|+-|.||.+-..+|+++..+..++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~ 265 (396)
T PRK09147 216 AAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLK 265 (396)
T ss_pred CCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHH
Confidence 000110 0 01111 28899999988863234677776655443
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=123.75 Aligned_cols=158 Identities=14% Similarity=0.076 Sum_probs=104.7
Q ss_pred HHHHHHHHHc----C---CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFL----N---ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l----~---a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.|++++ | ++++ .|++|+|+++++.+++..+.+++||+|++.. .|+. + ...++..|+++..+
T Consensus 66 ~lr~~ia~~l~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~--~---~~~~~~~g~~~~~~ 138 (364)
T PRK07865 66 ELREAIVGWLARRRGVTGLDPA--AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPT--Y---EVGARLAGATVVRA 138 (364)
T ss_pred HHHHHHHHHHHHHcCCCCCCcc--cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCccc--H---HHHHHhcCCEEEec
Confidence 5667777766 4 5554 7999999999999988887568999987643 4442 2 23456679988766
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CCC---CC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PKD---MD 317 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~~---m~ 317 (632)
+. .+++.. .+++++.++..+|+||..++.+ |+++|+++|+++++|.+... ..+ +.
T Consensus 139 ~~--------~~~l~~---------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 201 (364)
T PRK07865 139 DS--------LTELGP---------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVS 201 (364)
T ss_pred CC--------hhhCCc---------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCc
Confidence 31 122221 1358888888999999999864 66788999999999997542 110 01
Q ss_pred CCCCC----CCCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 318 SFGLS----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 318 ~ldls----~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
.++.. ..+-.+++.|+.|.||.+-..+|+++..++.++
T Consensus 202 ~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~ 243 (364)
T PRK07865 202 ILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVA 243 (364)
T ss_pred cccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHH
Confidence 11100 112348999999999853223677765555443
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.8e-10 Score=123.69 Aligned_cols=343 Identities=13% Similarity=0.130 Sum_probs=200.9
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.+..... .+. .. ..+...+..++++
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~------------------~~~--~~-----~~~~~~~la~~L~ 127 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTL------------------SSR--AF-----YNDKFPEFAEYLT 127 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCC------------------ccc--cc-----CCHHHHHHHHHHH
Confidence 57889998653 23367778876654432110 000 00 1234456777888
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-------CCCCe-EEE-eccccchhhHHHHHHH----HhcC-----CE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-------MSVKN-LLT-VYDYESEAVEAMIRTS----EKRG-----AR 241 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-------~~gd~-ilt-~~d~~s~~v~~~~~~a----~~~G-----~~ 241 (632)
++++.+ .+.|++++++|...+..--. + .+++. |+. ...||......+. .. .+.+ ..
T Consensus 128 ~~~~~~----~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s-~~~~~~~~~~~~~~~~~ 202 (474)
T PLN02624 128 SMFGYD----MVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAIS-MSCDNEATRGFGPLLPG 202 (474)
T ss_pred hhcCCC----eEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhh-cCCCccccccCCCCCCC
Confidence 888642 69999999998887664211 1 12333 554 3456753222221 10 0111 01
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
+..++. -+.+.+++.|... ..++..|++..+.+.+|..+| ++ +.++|+++|+++++|-+|.+ |..
T Consensus 203 ~~~~~~------~d~~~l~~~l~~~---~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~Grt 273 (474)
T PLN02624 203 HLKVDF------GDLDALEKIFEED---GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLART 273 (474)
T ss_pred ceEeCC------CCHHHHHHHHHhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcC
Confidence 222322 1578888888642 235788999999999999999 88 99999999999999999872 321
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
+...+.....||++++| |-+|.+...+|+++++++++..+.+...+
T Consensus 274 G~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~~i~~~~~~~~~~------------------------------ 321 (474)
T PLN02624 274 GKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLADKDVMLCIKPGEHG------------------------------ 321 (474)
T ss_pred cchhhHHhcCCCCCEEEec--ccccCCCCcceeeeecHHHHhHhccCCcC------------------------------
Confidence 12333345679999986 96663113478888887665444321111
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.| |. .+.....+. .++|+.+.+. .+.++...+
T Consensus 322 -------~T--~~------------g~pl~~aaa------------------------~aaLe~l~~~---~l~~~~~~~ 353 (474)
T PLN02624 322 -------ST--FG------------GNPLASAVA------------------------MAALQVVQDE---KLAERSAKL 353 (474)
T ss_pred -------CC--CC------------CCHHHHHHH------------------------HHHHHHHHhc---hHHHHHHHH
Confidence 00 00 000001111 1567666543 456677888
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
..+|++.|.++... .|.+ ++. . ..+|.++.+.+.+..........+.+.+.++||.+..+
T Consensus 354 ~~~l~~~L~~l~~~----~~~~--i~~-v-rg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~------------ 413 (474)
T PLN02624 354 GQELRDQLQKIQKQ----FPKL--IKE-V-RGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPT------------ 413 (474)
T ss_pred HHHHHHHHHHHHHh----CCCc--eEE-E-EeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecC------------
Confidence 88888888876311 1211 111 0 12466666655432100011234444456678887421
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhcccc
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVE 616 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~f~~ 616 (632)
+..+||+++++..|.+||+.+++.|++++..+-..
T Consensus 414 ----------------------------~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~~ 448 (474)
T PLN02624 414 ----------------------------HDTIIRLAPPLSISEDELQECSKALSDVLEHDLPK 448 (474)
T ss_pred ----------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23589999999999999999999999998887554
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-09 Score=120.36 Aligned_cols=175 Identities=18% Similarity=0.189 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.+.+.+.+.++.-.|...+...|++|+++++||.+++..+ .++||.|++. ..|+ .+.+..+..|+++..||+|
T Consensus 136 ~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l-~~pGd~v~vE~PtY~-----~~~~~~~~~g~~~~~vp~d 209 (459)
T COG1167 136 ELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLL-LDPGDTVLVEDPTYP-----GALQALEALGARVIPVPVD 209 (459)
T ss_pred HHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCcH-----HHHHHHHHcCCcEEecCCC
Confidence 3444444444433344433338999999999999999998 6799998753 3444 4456678899999999997
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCC-CC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMD-SF 319 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~-~l 319 (632)
.+| +++++|++.+...+ ..-++++|..+|+||..++++ ++++|+++++++|-|-.-.. +.... ..
T Consensus 210 -~~G-~~~e~le~~~~~~~----~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~ 283 (459)
T COG1167 210 -EDG-IDPEALEEALAQWK----PKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLK 283 (459)
T ss_pred -CCC-CCHHHHHHHHhhcC----CcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChH
Confidence 444 89999999987632 236789999999999999987 67899999999999975221 11000 01
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.+...+-=+++.||-|.+. |-..+|+|++.++.++.+
T Consensus 284 ~ld~~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~ 320 (459)
T COG1167 284 ALDAPGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKL 320 (459)
T ss_pred hhCCCCCEEEEeeehhhcc-cccceeeeeCCHHHHHHH
Confidence 2222234589999999877 235677777777665544
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-10 Score=121.27 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=119.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||.++. |.-++.+++++.+.+.... . .+... ..+...+..+++.
T Consensus 27 ~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~--------~------------~~~~~-----~~~~~~~la~~l~ 81 (377)
T PRK02936 27 NGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIW--------H------------VSNLF-----TNSLQEEVASLLA 81 (377)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc--------c------------ccccc-----CCHHHHHHHHHHH
Confidence 56789997554 5667778887665443210 0 00000 1133334444444
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC-CeEEE-eccccchhhHHHHHHHH---hcCC-----EEEEEeccCC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-KNLLT-VYDYESEAVEAMIRTSE---KRGA-----RVMSAEFSWP 250 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g-d~ilt-~~d~~s~~v~~~~~~a~---~~G~-----~v~~v~~~~~ 250 (632)
+..+. + .++|++++++|+..+.......+| ++|++ ...||.....++..... +.+. .+..++.
T Consensus 82 ~~~~~--~--~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (377)
T PRK02936 82 ENSAG--D--LVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPF--- 154 (377)
T ss_pred hcCCC--C--EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCC---
Confidence 44332 2 699999999999988874321234 44654 45677644444431100 0000 1112221
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--CCCCCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--MDSFGLS 322 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~~ldls 322 (632)
-+++++++.+.++ ++++++..+.+.+|...+ ++ +.++|+++|+++++|-++.. +.. +..+...
T Consensus 155 ---~d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~ 225 (377)
T PRK02936 155 ---NDIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQF 225 (377)
T ss_pred ---CCHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhh
Confidence 1578888877643 588999888888887643 77 88999999999999998753 221 1111111
Q ss_pred CCCCcEEEEccccccCCCCCc--eEEEEEeCCCcccc
Q 006746 323 LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL 357 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L 357 (632)
...+|.+ ++-|.+| + | +|++..+++..+.+
T Consensus 226 ~~~~di~--t~sK~l~--~-G~~ig~v~~~~~~~~~~ 257 (377)
T PRK02936 226 GLDPDIV--TVAKGLG--N-GIPVGAMIGKKELGTAF 257 (377)
T ss_pred CCCCcEE--EEccccc--C-CCccEEEEEcHHHHhhc
Confidence 2357854 5789877 2 4 78888777665544
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.3e-10 Score=126.41 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+.++.+.+|+.|||+. ....|+|+|.|++.++.+. ..+||.||+.-+.|-+.+.. ...-.|++.+++...
T Consensus 173 eG~i~eAq~~AA~~fgAd~---tyFlvNGTS~gn~a~i~a~-~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~ 245 (720)
T PRK13578 173 EGAAKDAQKHAAKVFNADK---TYFVLNGTSASNKVVTNAL-LTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETA 245 (720)
T ss_pred ChHHHHHHHHHHHHhCCCc---eEEEeCChhHHHHHHHHHh-cCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeecc
Confidence 3677899999999999974 5778899999999999988 68999998876655434443 123469999999765
Q ss_pred CCc----cccCH-----HHHHHHHHhcC-c---CCCceeEEEEeccCCCCccccchH-HHHH-HhhCCcEEEEeccccC-
Q 006746 249 WPR----LRINS-----EKLRKMVVSKG-K---KKKQRGLFVFPLHSRMTGARYPYL-WMRI-AQENDWHILIDACALG- 312 (632)
Q Consensus 249 ~~~----~~i~~-----~~l~~~i~~~~-~---~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~-a~~~g~~vlvDaaq~~- 312 (632)
... +.|+. +.|+++|.+.. . .++..++++++.. +.-|+.++++ |+++ ++..+ .++||-|+.+
T Consensus 246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah 323 (720)
T PRK13578 246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGY 323 (720)
T ss_pred ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC-cEEEeCcchhh
Confidence 421 23454 44998887651 1 1122477776654 5799999999 9988 68888 9999987654
Q ss_pred -CCCCCCC--CCC----CCCCc----EEEEccccccCCCCCceEEEEEeCCC
Q 006746 313 -PKDMDSF--GLS----LVRPD----FLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 313 -g~~m~~l--dls----~~~~D----f~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
+. .++ +++ ..++| +++-|.||+++. -+....|-++.+.
T Consensus 324 ~~F--~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~ 372 (720)
T PRK13578 324 EQF--IPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNH 372 (720)
T ss_pred hcc--CcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcc
Confidence 22 121 111 34789 999999998774 5667777776654
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-09 Score=122.20 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=98.2
Q ss_pred HHHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 173 SAMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.|+.|++++ |.+.+..+|++|+|+++|+.+++..+--.+||.|++.. .|+. . ...++..|++++.+++
T Consensus 171 ~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~--y---~~~~~~~g~~~v~~~l 245 (534)
T PLN02231 171 KGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPL--Y---SASIALHGGTLVPYYL 245 (534)
T ss_pred HHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChh--H---HHHHHHcCCEEEEEec
Confidence 36788888876 43322337999999999999999998324799977543 4442 1 2334668999999998
Q ss_pred cCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecc
Q 006746 248 SWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDAC 309 (632)
Q Consensus 248 ~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaa 309 (632)
+.. +..+++++|++.+.+......+++++++..-+|+||..++.+ |+++|+++|+++|.|-+
T Consensus 246 ~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEv 312 (534)
T PLN02231 246 DEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEV 312 (534)
T ss_pred CcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 733 246899999999976321122568888888899999999865 56788999999999985
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-09 Score=114.10 Aligned_cols=157 Identities=11% Similarity=0.139 Sum_probs=107.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.|+++++.+ .|++|+|+++||.++.. ..+||+|++.. .|+ .....++..|++++.++.+
T Consensus 52 ~~Lr~~ia~~~~~~----~I~it~Gs~~al~~~~~---~~~gd~v~v~~P~y~-----~~~~~~~~~g~~~~~v~~~--- 116 (330)
T PRK05664 52 DGLEAAARAYYGAP----QLLPVAGSQAAIQALPR---LRAPGRVGVLSPCYA-----EHAHAWRRAGHQVRELDEA--- 116 (330)
T ss_pred HHHHHHHHHHhCCC----CEEECcCHHHHHHHHHH---ccCCCEEEEcCCChH-----HHHHHHHHcCCeEEEechh---
Confidence 47799999999863 69999999999999874 36899976543 443 3345677889999888653
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEeccccCCCCCCC-CCCCCCCC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACALGPKDMDS-FGLSLVRP 326 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq~~g~~m~~-ldls~~~~ 326 (632)
++.+.+. + ++++++..-+|+||..+|.+ + ++.|+++|+++++|-+-.-.....+ ..+...+-
T Consensus 117 ------~~~~~~~-~------~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~ 183 (330)
T PRK05664 117 ------EVEAALD-S------LDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPG 183 (330)
T ss_pred ------hHhhhhc-C------CCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCC
Confidence 3444443 2 35677777789999999976 5 4556888999999987432110011 12221111
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
=+++.||-|.||.+---+|+++..++.++.+
T Consensus 184 vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~ 214 (330)
T PRK05664 184 LIVLRSFGKFFGLAGARLGFVLAEPALLRAL 214 (330)
T ss_pred EEEEeeccccccCCCcceEEEEeCHHHHHHH
Confidence 2889999999996323478888776665544
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-09 Score=115.80 Aligned_cols=160 Identities=13% Similarity=0.192 Sum_probs=113.0
Q ss_pred HHHHHHHHHHcC---CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 173 SAMKKRIMDFLN---ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 173 ~~~R~~ia~~l~---a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
.+.|+.|+++++ .+++ .|++|+|+++++.++...+ ++|++.. + ........++..|++++.+|.+
T Consensus 59 ~~Lr~aia~~~~~~~~~~~--~i~it~Ga~~~i~~~~~~~-----d~v~v~~--P--~y~~~~~~~~~~g~~~~~v~~~- 126 (335)
T PRK14808 59 EELIEKILSYLDTDFLSKN--NVSVGNGADEIIYVMMLMF-----DRSVFFP--P--TYSCYRIFAKAVGAKFLEVPLT- 126 (335)
T ss_pred HHHHHHHHHHhCCCCCCcc--eEEEcCCHHHHHHHHHHHh-----CcEEECC--C--CHHHHHHHHHHcCCeEEEecCC-
Confidence 478999999998 7665 7999999999999999987 4555432 3 1334456678899999999987
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccc--cCCCCCCCCCCCCCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACA--LGPKDMDSFGLSLVRP 326 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq--~~g~~m~~ldls~~~~ 326 (632)
+++.++... +. .+++++++..+|+||..++.+ +.+++ ++++++++|-+- +.+..+.++ +....-
T Consensus 127 ~~~~~~~~~----~~-------~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~-~~~~~~ 193 (335)
T PRK14808 127 KDLRIPEVN----VG-------EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDL-LKKYEN 193 (335)
T ss_pred CcCCCChhH----cc-------CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHH-HHhCCC
Confidence 444444322 21 237999999999999999999 88888 578999999863 222211111 111222
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
=+++.|+-|.||.+-.-+|+++..++.++.+
T Consensus 194 vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l 224 (335)
T PRK14808 194 LAVIRTFSKAFSLAAQRIGYVVSSEKFIDAY 224 (335)
T ss_pred EEEEEechhhccCcccceEEEEeCHHHHHHH
Confidence 3788999999995323369999877665544
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-09 Score=115.25 Aligned_cols=347 Identities=11% Similarity=0.102 Sum_probs=195.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..+. |--.+.+++++.+.+... + . . .+.. + ..+...+.-++++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~----~----~---~------~~~~----~---~~~~~~~lae~l~ 88 (412)
T TIGR02407 33 DGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADD----G----I---I------HSLD----M---ATEAKREFLETFN 88 (412)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhc----c----c---e------eccc----c---CcHHHHHHHHHHH
Confidence 67889998544 677788888876644321 0 0 0 0000 0 1233345556666
Q ss_pred HHcCCCCC-CccEEEe-CCHHHHHHHHHhhCCCCCC-CeEEE-eccccchhhHHHHHH---HHhc--C---CEEEEEecc
Q 006746 181 DFLNISEN-DYGMVFT-ANRTSAFKLLAESYPFMSV-KNLLT-VYDYESEAVEAMIRT---SEKR--G---ARVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~-ey~vvft-~naT~al~lv~~sl~~~~g-d~ilt-~~d~~s~~v~~~~~~---a~~~--G---~~v~~v~~~ 248 (632)
+.+..+.+ ...++|+ +++|+|...+.+--..-+| .+|++ ...||.....++.-. ..+. | ..+..+|+.
T Consensus 89 ~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~ 168 (412)
T TIGR02407 89 EIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYD 168 (412)
T ss_pred HhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCC
Confidence 65433321 1246674 8999988876654322234 34664 457886433332210 0011 1 123334432
Q ss_pred CCccc----cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc-c---hH-HHHHHhhCCcEEEEeccccC-CCC--C
Q 006746 249 WPRLR----INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-P---YL-WMRIAQENDWHILIDACALG-PKD--M 316 (632)
Q Consensus 249 ~~~~~----i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~-p---l~-i~~~a~~~g~~vlvDaaq~~-g~~--m 316 (632)
+.. -+.+.+++.|.+.......+..|.+.-+....|... | ++ +.++|+++|+++++|-+|.+ |.. +
T Consensus 169 --~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~ 246 (412)
T TIGR02407 169 --GYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTF 246 (412)
T ss_pred --CccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchh
Confidence 110 235667877864321113467777887888889854 3 33 56789999999999998862 210 1
Q ss_pred CCCCCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchh
Q 006746 317 DSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 394 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 394 (632)
-..+.....||++++| |.+| +.| +|+++++++. ..+.+...+
T Consensus 247 ~a~~~~~v~PDi~~~~--K~lg--~~G~pigav~~~~~~-~~~~~~~~~------------------------------- 290 (412)
T TIGR02407 247 FSFEPAGIEPDIVCLS--KSIS--GYGLPLALTLIKPEL-DVWKPGEHN------------------------------- 290 (412)
T ss_pred HHhcccCCCCCEEEec--hhcc--CCccceeEEEEchhh-hccCCCccC-------------------------------
Confidence 1223344589999877 9877 545 8999998775 333211100
Q ss_pred hhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHH
Q 006746 395 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 474 (632)
Q Consensus 395 ~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~ 474 (632)
+| |.+ |....... .+.|+.+ +.-+.+.+|++.+.
T Consensus 291 ------~T--~~g------------npl~~aaa------------------------~a~l~~~--i~~~~l~~~~~~~g 324 (412)
T TIGR02407 291 ------GT--FRG------------NNLAFVTA------------------------TAALEYY--WSDDAFEKAVQRKS 324 (412)
T ss_pred ------CC--CCc------------cHHHHHHH------------------------HHHHHHH--hcccHHHHHHHHHH
Confidence 00 000 00001111 1556642 22356788899999
Q ss_pred HHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 475 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 475 ~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
++|.++|..+.... |.+ + +. -...|.++.+.+.+. .....+.+.+.++||.+...
T Consensus 325 ~~l~~~l~~l~~~~----~~~-~-~~--vrg~Gl~~~l~l~~~----~~~~~~~~~~~~~Gv~v~~~------------- 379 (412)
T TIGR02407 325 EIIQERLDRIVAEY----PEL-I-KQ--VRGRGLMQGIECGDG----DLAGKIAKAAFENGLIIETS------------- 379 (412)
T ss_pred HHHHHHHHHHHhhC----CCc-e-Ee--eecceeEEEEEecCh----HHHHHHHHHHHHCCCEEecc-------------
Confidence 99999888763211 211 1 11 123566777777542 12234555556689887531
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.....+||+++.+..|.+||+++++.+++.|+
T Consensus 380 -------------------------~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 380 -------------------------GPNDEVIKLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred -------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 01235899999999999999999999998875
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-10 Score=122.04 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEecc-ccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYD-YESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d-~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
.+...++++.+=|+. ..+.++++-.|+..+..++ +++||+|+...+ |.. ....+..+.++.|+++.++...
T Consensus 65 ~~~lE~~~a~LEg~~----~~~afsSGmaAI~~~~l~l-l~~GD~vl~~~~~YG~-t~~~~~~~l~~~gi~~~~~d~~-- 136 (396)
T COG0626 65 RDALEEALAELEGGE----DAFAFSSGMAAISTALLAL-LKAGDHVLLPDDLYGG-TYRLFEKILQKFGVEVTFVDPG-- 136 (396)
T ss_pred HHHHHHHHHHhhCCC----cEEEecCcHHHHHHHHHHh-cCCCCEEEecCCccch-HHHHHHHHHHhcCeEEEEECCC--
Confidence 345667777777764 3556678889999988888 788999876554 554 5555667778899999988653
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL 329 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~ 329 (632)
+.+++.+++.+ +++++|.+-..+|++-...||. ++++||++|+.++||-+=+-|.-..||++ ++|++
T Consensus 137 ----~~~~~~~~~~~-----~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~---GaDIV 204 (396)
T COG0626 137 ----DDEALEAAIKE-----PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLEL---GADIV 204 (396)
T ss_pred ----ChHHHHHHhcc-----cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccChhhc---CCCEE
Confidence 34566666653 1359999999999999999999 99999999999999998766654357765 89999
Q ss_pred EEccccccCCCCCceEEEEE
Q 006746 330 ICSFYQIFGENPSGFGCLFV 349 (632)
Q Consensus 330 ~~S~hK~~G~~P~G~G~L~V 349 (632)
+=|.-|.+|.+--=+|.+++
T Consensus 205 vhSaTKyl~GHsDvl~G~v~ 224 (396)
T COG0626 205 VHSATKYLGGHSDVLGGVVL 224 (396)
T ss_pred EEeccccccCCcceeeeEEe
Confidence 99999977643333455555
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-10 Score=119.63 Aligned_cols=168 Identities=13% Similarity=0.130 Sum_probs=108.6
Q ss_pred HHHHHHHHH----cC--CCCCCccEEEeCCHHHHHHHHHhhCCC-CCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDF----LN--ISENDYGMVFTANRTSAFKLLAESYPF-MSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~----l~--a~~~ey~vvft~naT~al~lv~~sl~~-~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.|+++ .| ++++ .|++|+|+++|+.+++..+-+ .+|+.|++. -.|+. ....++..|++++.+
T Consensus 64 ~lr~aia~~l~~~~g~~~~~~--~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~-----~~~~~~~~g~~v~~v 136 (374)
T PRK05839 64 SLREAQRGFFKRRFKIELKEN--ELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQI-----YEGAAIASRAKVLLM 136 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcc--eEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchh-----hHHHHHhcCCEEEEe
Confidence 445555444 46 4554 799999999999999887644 578887754 33432 233456789999999
Q ss_pred eccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc--CC-CCCC
Q 006746 246 EFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL--GP-KDMD 317 (632)
Q Consensus 246 ~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~--~g-~~m~ 317 (632)
+.+.. ...++.++. .+ + +++++.++..+|+||..+|.+ |+++|+++|+++|+|-+-. .. ....
T Consensus 137 ~~~~~~~~~~d~~~~--~~-~------~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~ 207 (374)
T PRK05839 137 PLTKENDFTPSLNEK--EL-Q------EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPP 207 (374)
T ss_pred ecccccCCcCCcchh--hh-c------cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCC
Confidence 98622 233443332 12 2 258999999999999999876 4567889999999998632 11 0000
Q ss_pred C-CCC------CCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 318 S-FGL------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 318 ~-ldl------s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+ +++ ...+-=+++.|+-|.||.+-.-+|+++..++.++.+
T Consensus 208 s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~ 254 (374)
T PRK05839 208 SLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKY 254 (374)
T ss_pred CHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHH
Confidence 1 111 111223888999998886434568888766554433
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-09 Score=119.08 Aligned_cols=167 Identities=11% Similarity=0.022 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+.++.+.+|+.|||+. ....|+|+|.+++.++.+. ..+||.||..-..|-+.+..| .-.|+++++++..
T Consensus 194 ~G~i~eAe~~aA~~fgAd~---tyfvvNGTS~~n~av~~a~-~~~Gd~VLvdRN~HKSv~~aL----ilsga~PVYl~P~ 265 (713)
T PRK15399 194 TGPHLEAEEYIARTFGAEQ---SYIVTNGTSTSNKIVGMYA-APAGSTLLIDRNCHKSLAHLL----MMSDVVPIWLKPT 265 (713)
T ss_pred ChHHHHHHHHHHHHhCCCc---EEEEeCChHHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH----HHcCCeeEEeccc
Confidence 3677899999999999974 5778899999999999988 799999988765554344443 4469999999765
Q ss_pred CCc----cccCH-----HHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEE-EEeccccC--CCC
Q 006746 249 WPR----LRINS-----EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHI-LIDACALG--PKD 315 (632)
Q Consensus 249 ~~~----~~i~~-----~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~v-lvDaaq~~--g~~ 315 (632)
+.. +.++. +.|+++|.+.... ++++.++++.. +.-|+.++++ |++.+ |+.+ +||.|+.+ ..
T Consensus 266 ~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F- 339 (713)
T PRK15399 266 RNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHF- 339 (713)
T ss_pred ccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhc-
Confidence 321 23444 8999999865321 23355555554 7899999999 88888 6766 69987654 21
Q ss_pred CCC--CCCCCC----CCcEE---EEccccccCCCCCceEEEEEeC
Q 006746 316 MDS--FGLSLV----RPDFL---ICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 316 m~~--ldls~~----~~Df~---~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
.+ .+.+.. ++|.+ +-|.||.++. -+-...|-|+.
T Consensus 340 -~p~~~~~sam~~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~ 382 (713)
T PRK15399 340 -HPIYQGKSGMSGERVPGKVIFETQSTHKMLAA-FSQASLIHIKG 382 (713)
T ss_pred -CcccCCcChhhCCCCCCeeeeeeeehhccccc-cchheeeeecC
Confidence 11 111221 35666 9999997775 66777777754
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-08 Score=115.74 Aligned_cols=213 Identities=13% Similarity=0.070 Sum_probs=143.1
Q ss_pred eEeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 110 TCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 110 vyLD~ag~gl~~~~~~~a~~~-~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
-|+-|.-..+.+.+++-.+.. ..+.... .|+ .+-....++.++-+.+++++|-++.
T Consensus 85 ry~ghm~~~~~~paila~~~a~~~N~n~~-----~~e------------------~SP~~t~lE~~vi~~la~l~G~~~~ 141 (608)
T TIGR03811 85 RYWGHMNSETLMPAILAYNYAMLWNGNNV-----AYE------------------SSPATSQMEEEVGKEFATLMGYKNG 141 (608)
T ss_pred ceEEECcCCCCHHHHHHHHHHHHhCCCCC-----ccc------------------cCchHHHHHHHHHHHHHHHhCCCCC
Confidence 588888888888888766432 1111000 011 1223467888999999999998753
Q ss_pred CccEEEeCCHHHHHHH---HHhhC---CC--CC-------------------------------------------CC--
Q 006746 189 DYGMVFTANRTSAFKL---LAESY---PF--MS-------------------------------------------VK-- 215 (632)
Q Consensus 189 ey~vvft~naT~al~l---v~~sl---~~--~~-------------------------------------------gd-- 215 (632)
.=+||+++|.|.-. +|+.. |+ +. |.
T Consensus 142 --~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~ 219 (608)
T TIGR03811 142 --WGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDL 219 (608)
T ss_pred --CeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhcccccccc
Confidence 34589999988653 33332 21 00 00
Q ss_pred ----eEEEecc-ccchhhHHHHHHHHhcCC---EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcc
Q 006746 216 ----NLLTVYD-YESEAVEAMIRTSEKRGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA 287 (632)
Q Consensus 216 ----~ilt~~d-~~s~~v~~~~~~a~~~G~---~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~ 287 (632)
+++++.. |.| | ...+.-.|+ .|+.||++ +++++|+++|++.|.+.......+-.|+-+.-++.+|.
T Consensus 220 ~~~~~vl~s~~aHyS----~-~KAa~ilGlG~~~vv~VpvD-~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~Ga 293 (608)
T TIGR03811 220 QKLGKWLVPQTKHYS----W-LKAADIIGIGLDQVIPVPVD-SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGA 293 (608)
T ss_pred ccceEEEECCCccHH----H-HHHHHHcCCCcccEEEeecC-CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcc
Confidence 2344444 443 3 345566787 58899998 78899999999999864322334556777899999999
Q ss_pred ccchH-HHHHH---hhCCc--EEEEeccccCCC-CC--------CCCC------------------CC---------CCC
Q 006746 288 RYPYL-WMRIA---QENDW--HILIDACALGPK-DM--------DSFG------------------LS---------LVR 325 (632)
Q Consensus 288 ~~pl~-i~~~a---~~~g~--~vlvDaaq~~g~-~m--------~~ld------------------ls---------~~~ 325 (632)
+=|++ |+++| +++|+ +++||||-.+.. .| .+.+ ++ .-+
T Consensus 294 iDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ 373 (608)
T TIGR03811 294 VDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISE 373 (608)
T ss_pred cCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcC
Confidence 99999 99988 66786 799999854411 00 0110 11 137
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCc
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~ 354 (632)
+|-+++.+||++.. |.+.|++++|+..+
T Consensus 374 ADSItvDpHK~g~~-Py~~G~ll~Rd~~~ 401 (608)
T TIGR03811 374 AESVTIDPHKMGYI-PYSAGGIVIQDIRM 401 (608)
T ss_pred ceEEEeCccccccc-CCCeEEEEEeCHHH
Confidence 89999999998887 99999999998753
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-09 Score=118.63 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=108.7
Q ss_pred HHHHHHHHHHc---CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCC--------
Q 006746 173 SAMKKRIMDFL---NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGA-------- 240 (632)
Q Consensus 173 ~~~R~~ia~~l---~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~-------- 240 (632)
.+.|+.|++++ +++++ .|++|+|+++++.++.. + +.+||+|++. ..|+. ....++..|+
T Consensus 78 ~~lr~aia~~~~~~~~~~d--~I~it~Ga~~al~~l~~-l-~~~gd~Vlv~~P~y~~-----~~~~~~~~g~~~~~~~~~ 148 (402)
T TIGR03542 78 PFLREAIAENDYRGRIDPE--EIFISDGAKCDVFRLQS-L-FGSDNTVAVQDPVYPA-----YVDSNVMAGRAGVLDDDG 148 (402)
T ss_pred HHHHHHHHHHHHhcCCCHH--HEEECCCcHHHHHHHHH-h-cCCCCEEEEeCCCCcc-----hHHHHHHcCCcccccccc
Confidence 36888888876 67765 79999999999998754 4 4789997654 34442 2345667888
Q ss_pred ---EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC-
Q 006746 241 ---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG- 312 (632)
Q Consensus 241 ---~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~- 312 (632)
++..++.+... ....+ +.+ ..+++++.++..+|+||..++ ++ |+++|+++|+++++|-+..-
T Consensus 149 ~~~~~~~v~~~~~~-~~~~~-~~~--------~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~ 218 (402)
T TIGR03542 149 RYSKITYLPCTKEN-NFIPD-LPE--------EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAF 218 (402)
T ss_pred ccceEEEeecchhh-CCCCC-ccc--------cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhh
Confidence 88888875221 12211 111 123588999999999999999 55 77889999999999997432
Q ss_pred -CCCCCCCCCCCC----CCcEEEEccccccCCCCCceEEEEEeCCCc
Q 006746 313 -PKDMDSFGLSLV----RPDFLICSFYQIFGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 313 -g~~m~~ldls~~----~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~ 354 (632)
..+..+..+..+ ..-+++.|+-|.||.+.-.+|++++.++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~ 265 (402)
T TIGR03542 219 ISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELT 265 (402)
T ss_pred ccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHh
Confidence 110011112111 123678899999985333468888876643
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-09 Score=115.85 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=111.1
Q ss_pred HHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ | ++++ +|++|+|+++||.+++. + ..+||+|++. -.|+. ... . .....|++++.++
T Consensus 77 ~LReaia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~-l-~~~Gd~Vlv~~P~Y~~--~~~-~-~~~~~g~~~v~v~ 148 (433)
T PRK06855 77 ETREFLAELNNKRGGAQITPD--DIIFFNGLGDAIAKIYG-L-LRREARVIGPSPAYST--HSS-A-EAAHAGYPPVTYR 148 (433)
T ss_pred HHHHHHHHHHHhccCCCCCHh--HEEEcCcHHHHHHHHHH-h-cCCCCeEEEeCCCCch--HHH-H-HHHhcCCeEEEEe
Confidence 6777777776 3 4554 79999999999999985 5 6889997754 35543 111 1 1234588888888
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc--C--CCCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL--G--PKDMD 317 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~--~--g~~m~ 317 (632)
.+.. ...+++++|++.+... ++++++.++..+|+||..++.+ |+++|+++|+++|.|-+-. . +....
T Consensus 149 ~~~~~~~~~d~~~l~~~~~~~----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~ 224 (433)
T PRK06855 149 LDPENNWYPDLDDLENKVKYN----PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTV 224 (433)
T ss_pred cccccCCCCCHHHHHHHHhcC----CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCC
Confidence 7632 3358999999988632 1347788888899999999976 4667899999999998632 1 21111
Q ss_pred CC-CCCCCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 318 SF-GLSLVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 318 ~l-dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
++ .+..-..-+++.|+-|.|+.+---+|++++.
T Consensus 225 sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p 258 (433)
T PRK06855 225 PLSEVIGDVPGIALKGISKELPWPGSRCGWIEVY 258 (433)
T ss_pred CHHHHcCcCCeEEEecCccccCCCcceEEEEEEe
Confidence 11 1111112388999999888533346777763
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-08 Score=113.20 Aligned_cols=349 Identities=11% Similarity=0.082 Sum_probs=193.8
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..++ |--.+.+.+++.+.+... + ++. +. . + ......+.-++++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~----~--~~~-----------~~--~--~---~~~~~~~lae~l~ 92 (425)
T PRK09264 37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRD----G--ITH-----------GL--D--M---HTTAKREFLETFE 92 (425)
T ss_pred CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhc----c--ccc-----------cc--c--c---CcHHHHHHHHHHH
Confidence 67889997444 566678888876544321 0 000 00 0 0 1122334555666
Q ss_pred HHcCCCC-CCccEEEe-CCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHH---HHhc--CC---EEEEEecc
Q 006746 181 DFLNISE-NDYGMVFT-ANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRT---SEKR--GA---RVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~-~ey~vvft-~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~---a~~~--G~---~v~~v~~~ 248 (632)
+.+..+. -++.+.|+ +++|+|...+++--..-+|+ +|++ ...||......|.-. ..+. |. .+..+|..
T Consensus 93 ~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~ 172 (425)
T PRK09264 93 ETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYD 172 (425)
T ss_pred HhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCC
Confidence 6554332 12246674 79999888765432211343 4654 456776433222110 0111 11 34455542
Q ss_pred CC-cc-ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc----chH-HHHHHhhCCcEEEEeccccC-CC--CCCC
Q 006746 249 WP-RL-RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYL-WMRIAQENDWHILIDACALG-PK--DMDS 318 (632)
Q Consensus 249 ~~-~~-~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~----pl~-i~~~a~~~g~~vlvDaaq~~-g~--~m~~ 318 (632)
.. .. .-+.+++++.|.+.......+..|++.-+....|... .++ +.++|+++|+++++|-+|.+ |. .+..
T Consensus 173 ~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~ 252 (425)
T PRK09264 173 GYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFS 252 (425)
T ss_pred CccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHH
Confidence 10 00 1256778888864321113467778877777788766 367 88999999999999998853 21 0112
Q ss_pred CCCCCCCCcEEEEccccccCCCCCce--EEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGF--GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~--G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
.+.....||++++| |.+| +.|+ |+++++++. ..+.+...+
T Consensus 253 ~~~~~v~PDi~t~~--K~l~--~~G~pigav~~~~~i-~~~~~~~~~--------------------------------- 294 (425)
T PRK09264 253 FERAGITPDIVTLS--KSIS--GYGLPMALVLIKPEL-DVWKPGEHN--------------------------------- 294 (425)
T ss_pred HhhcCCCCCEEEec--cccC--CCccceEEEEEchhh-hccCCCccC---------------------------------
Confidence 22223578988886 9777 5464 999998775 222211100
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHH-HHHHhhCHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGL-DQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aL-d~~~~~Gl~~I~~r~~~L~~ 475 (632)
+| |.+ |.....+. .++| +.+. -+.+.+|++.+.+
T Consensus 295 ----~T--~~g------------np~~~aaa------------------------~a~l~~~~~---~~~l~~~~~~~g~ 329 (425)
T PRK09264 295 ----GT--FRG------------NNLAFVTA------------------------TAALEEYWS---DDAFEKEVKAKGE 329 (425)
T ss_pred ----CC--CCC------------CHHHHHHH------------------------HHHHHHHHh---hhHHHHHHHHHHH
Confidence 01 000 00001111 1455 2322 2467888999999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
+|.+.|.++.-. .|.+ + +. . ...|.++.+.+.+. -....+.+.+.++||.++.+
T Consensus 330 ~l~~~l~~l~~~----~~~~-~-~~-v-rg~Gl~~~i~l~~~----~~~~~l~~~~~~~Gv~~~~~-------------- 383 (425)
T PRK09264 330 LVRERLEEIAAK----YPGL-G-AE-V-RGRGMMQGIDFGDG----ELAGKIAAEAFENGLIIETS-------------- 383 (425)
T ss_pred HHHHHHHHHHHh----CCCc-e-ec-c-eecccEEEEEecCh----HHHHHHHHHHHHCCCEEecc--------------
Confidence 999988876211 1222 1 11 1 12466767776541 12234455556678887531
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+||+++.+..|.+||+++++.|.+.|..
T Consensus 384 ------------------------~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 384 ------------------------GPEDEVVKLLPPLTIDEEELEEGLDILEEAVAE 416 (425)
T ss_pred ------------------------CCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 012358999999999999999999999998865
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=112.15 Aligned_cols=205 Identities=12% Similarity=0.190 Sum_probs=122.2
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|+|.++ .|.-.+.+.+++.+.+++. +.. .+. + ..+...+..++++
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~--------~~~---------~~~-----~---~~~~~~~l~~~l~ 92 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKL--------WHI---------SNV-----F---TNEPALRLAKKLI 92 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhc--------Ccc---------cCc-----c---CCHHHHHHHHHHH
Confidence 5788999866 5677778888766543221 000 110 0 1123347778888
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEE-EeccccchhhHHHHHHH------H---hcCCEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLL-TVYDYESEAVEAMIRTS------E---KRGARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~il-t~~d~~s~~v~~~~~~a------~---~~G~~v~ 243 (632)
++++.+ .+.|+.++++|...+..-.. + ..++ +|+ ....||......+ ... . .....+.
T Consensus 93 ~~~~~~----~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~-~~~~~~~~~~~~~~~~~~~~ 167 (403)
T PRK05093 93 DATFAE----RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTV-SVGGQPKYSDGFGPKPADIT 167 (403)
T ss_pred hhCCCC----EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhH-hhcCChhhhhcCCCCCCCcE
Confidence 877542 69999999998887765321 1 1233 354 4556776333221 110 0 0112233
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD-- 315 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~-- 315 (632)
.++. -|.+++++.+.++ ++++++.-+....|...| ++ +.++|+++|+++++|-++.. +..
T Consensus 168 ~~~~------~d~~~l~~~l~~~------~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~ 235 (403)
T PRK05093 168 HVPF------NDLAAVKAVIDDH------TCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD 235 (403)
T ss_pred EeCC------CCHHHHHHHhcCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc
Confidence 3332 1678888888643 577888766665665544 77 88999999999999998652 221
Q ss_pred CCCCCCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccC
Q 006746 316 MDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILV 358 (632)
Q Consensus 316 m~~ldls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~ 358 (632)
+.........||++ ++=|.+| | | +|+++.+++.++.+.
T Consensus 236 ~~~~~~~~~~pdi~--s~sK~l~--~-G~rig~vv~~~~i~~~l~ 275 (403)
T PRK05093 236 LFAYMHYGVTPDIL--TSAKALG--G-GFPIGAMLTTAEIASHFK 275 (403)
T ss_pred chhhhhcCCCCCEE--Eeccccc--C-CcceEEEEEcHHHHhhcC
Confidence 11122223468865 4569777 3 5 899998887766554
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-09 Score=118.46 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=104.1
Q ss_pred HHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCC----CCCCeEEE--eccccchhhHHHHHHHHhcC--
Q 006746 174 AMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPF----MSVKNLLT--VYDYESEAVEAMIRTSEKRG-- 239 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~----~~gd~ilt--~~d~~s~~v~~~~~~a~~~G-- 239 (632)
+.|+.|++++ | ++++ .|++|+|+++|+.+++..+.- .+||.|++ ...|+. .. ..++..|
T Consensus 78 ~LR~aia~~~~~~~g~~v~~~--~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~--y~---~~~~~~~~~ 150 (416)
T PRK09440 78 ELIEALAALLNERYGWNISPQ--NIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIG--YA---DAGLEEDLF 150 (416)
T ss_pred HHHHHHHHHHHHHhCCCCChh--hEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchh--hH---HHhhccCce
Confidence 5677777776 3 5655 799999999999999998832 35888766 345542 11 1122122
Q ss_pred --CEEEEEeccCC--ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc
Q 006746 240 --ARVMSAEFSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL 311 (632)
Q Consensus 240 --~~v~~v~~~~~--~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~ 311 (632)
..+..++++.. ...+++++|+ +.+ ++++++++..+|+||..++.+ |+++|+++++++++|-+-.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~d~~~l~--~~~------~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~ 222 (416)
T PRK09440 151 VSYRPNIELLPEGQFKYHVDFEHLH--IDE------DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYG 222 (416)
T ss_pred eecccccccccccccccCCCHHHcc--cCC------CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcc
Confidence 22233333311 1357888876 222 358999999999999999954 6778899999999999864
Q ss_pred CCCC-CCCCCCCC--CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 312 GPKD-MDSFGLSL--VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 312 ~g~~-m~~ldls~--~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.... ..-.++.. .+-=+++.|+-|. +.+-.-+|+++..+++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~ 270 (416)
T PRK09440 223 PPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEAL 270 (416)
T ss_pred ccCCCcchhhcCccccCCeEEEeccccc-CCCcceEEEEeCCHHHHHHH
Confidence 3210 00011110 1122778899995 65333468777666554433
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-10 Score=113.81 Aligned_cols=294 Identities=14% Similarity=0.140 Sum_probs=191.0
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHH-HHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAM-IRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~-~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+..+++|+++|-. .-.|++++|.+..+.+..---++|.+|+..+..| .+.|= ..++.-.|+.++.+... ++
T Consensus 59 ~rLE~~vA~l~GKE----AgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~H--I~~~E~gg~s~l~gv~~~tv~~e-~d 131 (384)
T KOG1368|consen 59 NRLEQRVAELFGKE----AGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAH--IHRYEQGGISQLAGVHVRTVKNE-ND 131 (384)
T ss_pred HHHHHHHHHHhCcc----ceeeecccccccHHHHHHHhcCCCceEEeccchh--eeehhccChhhhccceeEeeeeC-CC
Confidence 36778899999964 3568899999988877765456898987665433 23331 12334457888888776 78
Q ss_pred cccCHHHHHHHHHhcCcC--CCceeEEEEeccCCCCc-cccchH-H---HHHHhhCCcEEEEeccccCCCC-CCCCCCCC
Q 006746 252 LRINSEKLRKMVVSKGKK--KKQRGLFVFPLHSRMTG-ARYPYL-W---MRIAQENDWHILIDACALGPKD-MDSFGLSL 323 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~--~~~~~Lv~~~~~sn~TG-~~~pl~-i---~~~a~~~g~~vlvDaaq~~g~~-m~~ldls~ 323 (632)
+.+++++|+.+|...... .+.++|+++-.-.+.+| ..+|++ + .++|+++|+.+.+|+|-..-.. -..+.+++
T Consensus 132 gtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~ 211 (384)
T KOG1368|consen 132 GTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKK 211 (384)
T ss_pred CeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHH
Confidence 899999999999854312 35789999999888888 889999 3 3568999999999986444110 00122222
Q ss_pred C--CCcEEEEccccccCCCCCceEEEEE-eCCCccccC---CCCCCCceeecccccccccccccCCCCCCccccchhhhh
Q 006746 324 V--RPDFLICSFYQIFGENPSGFGCLFV-KKSTVPILV---DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 397 (632)
Q Consensus 324 ~--~~Df~~~S~hK~~G~~P~G~G~L~V-r~~~~~~L~---~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 397 (632)
+ -.|-+...+-|-+|. |- |=++| +++.+++.+ ....||+
T Consensus 212 i~~~fDSVsiCLSKglgA-PV--GSViVG~k~FI~kA~~~RKalGGGm-------------------------------- 256 (384)
T KOG1368|consen 212 ICSAFDSVSICLSKGLGA-PV--GSVIVGSKDFIDKARHFRKALGGGM-------------------------------- 256 (384)
T ss_pred HHHhhhhhhhhhhccCCC-Cc--ccEEEccHHHHHHHHHHHHHhcCch--------------------------------
Confidence 2 458899999998887 64 43444 455544322 1122222
Q ss_pred hhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHH
Q 006746 398 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477 (632)
Q Consensus 398 ~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L 477 (632)
||.|...- .+| -+|++... -+..-++|.+.|++++
T Consensus 257 ----------------RQsGvLaa---aaL-------------------------val~~~~~-~L~~dHk~A~~lAe~~ 291 (384)
T KOG1368|consen 257 ----------------RQSGVLAA---AAL-------------------------VALDENVP-LLRADHKRAKELAEYI 291 (384)
T ss_pred ----------------hHHHHHHH---HHH-------------------------HHhhcchH-HHHHHHHHHHHHHHHh
Confidence 11111100 111 23333322 1455567777777766
Q ss_pred HHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 478 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 478 ~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
. ++ +.+++--| .-...++..++.-. .+.++.+.+.++++||.+-.|
T Consensus 292 ~----~~--------~~i~v~v~---a~etNiv~~~l~q~---~~~~~~l~~~~~k~gi~lm~~---------------- 337 (384)
T KOG1368|consen 292 N----TP--------EEIRVEVP---AVETNIVNMVLCQA---RLTAEELCKFLEKNGILLMGG---------------- 337 (384)
T ss_pred c----cc--------cceeeecc---hhhcceeeeecccc---cCCHHHHHHHHHHCCeEEeec----------------
Confidence 5 33 33555444 23567887777543 389999999999999988643
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH-Hhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA-QFLD 611 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~-~~l~ 611 (632)
....+|++||+--|.+||+.++..+. +|+.
T Consensus 338 ------------------------~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~ 368 (384)
T KOG1368|consen 338 ------------------------ASRRIRIVLHHQVTDEDVEYVKSVLSKKFLK 368 (384)
T ss_pred ------------------------cccceEEEEEEecCHHHHHHHHHHHHHHHHh
Confidence 12259999999999999999999994 4443
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.4e-09 Score=120.10 Aligned_cols=312 Identities=12% Similarity=0.053 Sum_probs=194.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+.++.+.+|+.|||+. ....|+|+|.|++.++.+. ..+||.||..-..|-+.+..| .-.|++.++++..
T Consensus 194 ~G~i~eAe~~AA~~fgAd~---tyfvvNGTS~~n~av~~a~-~~~Gd~VLvdRN~HKSv~haL----ilsga~PVYl~P~ 265 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADR---SYMVTNGTSTANKIVGMYS-APAGSTVLIDRNCHKSLTHLM----MMSDVTPIYFRPT 265 (714)
T ss_pred ChHHHHHHHHHHHHhCCCc---EEEEeCchHHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH----HHcCCeEEEeccc
Confidence 3677899999999999974 5777899999999999887 789999988765554344443 4479999999765
Q ss_pred CCc----cccC-----HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC--CCCC
Q 006746 249 WPR----LRIN-----SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG--PKDM 316 (632)
Q Consensus 249 ~~~----~~i~-----~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~--g~~m 316 (632)
+.. +.++ .+.|++.|.+.... +++..++++. ++.-|+.++++ |+++++.++ ++||.|+.+ ..
T Consensus 266 rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~-pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F-- 339 (714)
T PRK15400 266 RNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITN-STYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNF-- 339 (714)
T ss_pred ccccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEEC-CCCccEecCHHHHHHHhCCCC--EEEEccchhhhcc--
Confidence 422 2344 89999999865321 2223455544 47899999999 999999887 689987654 11
Q ss_pred CC-C-CCCC--CCC---c--EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCC
Q 006746 317 DS-F-GLSL--VRP---D--FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE 387 (632)
Q Consensus 317 ~~-l-dls~--~~~---D--f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e 387 (632)
.+ + +.+. .+. | |++-|.||.++. -+-...|-|+... ..
T Consensus 340 ~p~~~~~sam~~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~v----d~---------------------------- 386 (714)
T PRK15400 340 SPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDV----NE---------------------------- 386 (714)
T ss_pred CcccCCcChhhcCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCC----CH----------------------------
Confidence 11 1 1121 123 5 999999997774 4455555443321 00
Q ss_pred ccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh-hCHHHH
Q 006746 388 PEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMI 466 (632)
Q Consensus 388 ~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~-~Gl~~I 466 (632)
.++.+.. ..-++..|..+.+++|+ .|..++.. .| ...
T Consensus 387 -----~~~n~a~------------~m~~STSPsY~l~ASLD------------------------~a~~~m~~~~G-~~l 424 (714)
T PRK15400 387 -----ETFNEAY------------MMHTTTSPHYGIVASTE------------------------TAAAMMKGNAG-KRL 424 (714)
T ss_pred -----HHHHHHH------------HHHcCCCcHHHHHHHHH------------------------HHHHHHHhhhh-HHH
Confidence 0111100 00012235566667776 66666664 44 556
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCC------------------------CCC-cEEEEEEcc--CCC
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF------------------------DRG-PALAFNVFD--WKR 519 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~------------------------~rg-~ivaFnv~~--~~G 519 (632)
.++...++..+++.|.+++... +++ -+++++|..-. .-. -=|++..++ .+|
T Consensus 425 ~~~~i~~a~~~R~~l~~~~~~~-~~w-~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g 502 (714)
T PRK15400 425 INGSIERAIKFRKEIKRLRTES-DGW-FFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDG 502 (714)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-cCc-eEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCc
Confidence 6777778888899998873200 000 04555543100 001 112233322 222
Q ss_pred C----ccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCC
Q 006746 520 E----KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLAN 595 (632)
Q Consensus 520 ~----~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t 595 (632)
+ .++...|.+.++++||.+-- .....|=+=++..+|
T Consensus 503 ~~~~~Gipg~~v~~~L~e~gI~~E~----------------------------------------~d~~~iLfl~s~g~t 542 (714)
T PRK15400 503 TMSDFGIPASIVAKYLDEHGIVVEK----------------------------------------TGPYNLLFLFSIGID 542 (714)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEe----------------------------------------cCCCeEEEEeCCCCC
Confidence 2 26777888888888887631 123466666778899
Q ss_pred HHHHHHHHHHHHHhhh
Q 006746 596 FEDVYRLWAFVAQFLD 611 (632)
Q Consensus 596 ~eDV~rlv~~l~~~l~ 611 (632)
.+++++|++.|.+|-+
T Consensus 543 ~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 543 KTKALSLLRALTDFKR 558 (714)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998833
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=110.70 Aligned_cols=332 Identities=12% Similarity=0.138 Sum_probs=193.3
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|+|.++ .|.-.+.+.+++.+.+... +. + +. . + ..+...+..++++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~--------~~---~------~~---~--~---~~~~~~~la~~L~ 87 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKL--------WH---I------GN---G--Y---TNEPVLRLAKKLV 87 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhc--------cc---c------cC---c--c---CCHHHHHHHHHHH
Confidence 5678999866 5666778888776543321 00 0 00 0 0 1244567888888
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CC-----CCC-eEE-EeccccchhhHHHHHHHHh----c-----CCEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FM-----SVK-NLL-TVYDYESEAVEAMIRTSEK----R-----GARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~-----~gd-~il-t~~d~~s~~v~~~~~~a~~----~-----G~~v~ 243 (632)
++++.+ .+.|++++++|...++.... +. +|. +|+ ....||......+. .... . ...+.
T Consensus 88 ~~~~~~----~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (397)
T TIGR03246 88 DATFAD----KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVS-VGGQPKYSQGFAPLPGGIK 162 (397)
T ss_pred hhCCCC----EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHH-hcCCcccccCCCCCCCceE
Confidence 887642 69999999999988776541 11 233 455 45577764333221 1100 0 01222
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD-- 315 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~-- 315 (632)
.++. -|.+++++.|.++ +++|++.-+.+..|...| ++ +.++|+++|+++++|-++.+ |..
T Consensus 163 ~~~~------~d~~~l~~~l~~~------~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~ 230 (397)
T TIGR03246 163 HAPY------NDLAAAKALISDK------TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE 230 (397)
T ss_pred EeCC------CCHHHHHHHhccC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc
Confidence 2322 2678898888643 588888888888887653 66 78899999999999998742 211
Q ss_pred CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 316 MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 316 m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
+.....-...||++ ++=|.+|. --=+|++..+++.++.+.....+
T Consensus 231 ~~a~~~~gv~pDi~--t~~K~lgg-G~pigav~~~~~i~~~~~~~~~~-------------------------------- 275 (397)
T TIGR03246 231 LYAYMHYGVTPDIL--TSAKALGG-GFPIGAMLTTTEIAAHLKVGTHG-------------------------------- 275 (397)
T ss_pred chhhhhcCCCCCEE--EeehhhhC-CcceeEEEEcHHHHHhccCCCcC--------------------------------
Confidence 11111112368877 45785541 11278888888766544321100
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~ 475 (632)
.| |. | |.+...+. .++|+.+.+ +.+.++.+.+.+
T Consensus 276 -----~t--~~----------~--~p~~~aaa------------------------~a~l~~~~~---~~l~~~~~~~~~ 309 (397)
T TIGR03246 276 -----TT--YG----------G--NPLACAVA------------------------GKVLDLVNT---PELLAGVKQRHD 309 (397)
T ss_pred -----CC--CC----------C--CHHHHHHH------------------------HHHHHHHhh---ccHHHHHHHHHH
Confidence 00 00 0 00011111 156666543 457788999999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
+|++.|.++.... +.+ +. . ...|.++.+.+.+... -....+.+.+.++||.+..
T Consensus 310 ~l~~~L~~l~~~~----~~~---~~-v-rg~G~~~~i~~~~~~~--~~~~~~~~~l~~~Gv~~~~--------------- 363 (397)
T TIGR03246 310 LFVDGLEKINARY----NVF---SE-I-RGKGLLIGAVLTEAYQ--GKAKQFVNAAAEEGVIALI--------------- 363 (397)
T ss_pred HHHHHHHHHHhcC----CCe---Ee-e-ecCceEEEEEEcCchh--hHHHHHHHHHHHCCeEEee---------------
Confidence 9999998873211 222 11 0 1245666665543100 1223444445556777642
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.++||+++.+..|.+||+.+++.|.++++.
T Consensus 364 -------------------------~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 364 -------------------------AGPNVVRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred -------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12358999999999999999999999998764
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-08 Score=108.49 Aligned_cols=161 Identities=11% Similarity=0.085 Sum_probs=105.2
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCcc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRL 252 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~ 252 (632)
.+.|+.|++++|.++. ..|++|+|+++++.++... +++|+ +++.. ++ .......++..|++++.++.+.
T Consensus 56 ~~L~~~ia~~~~~~~~-~~I~i~~Gs~e~i~~l~~~--~~~g~-v~v~~--P~--y~~y~~~~~~~g~~~~~v~~~~--- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDA-AHVLPVAGSQAAIRALPAL--LPRGR-VGIAP--LA--YSEYAPAFARHGHRVVPLDEAA--- 124 (339)
T ss_pred HHHHHHHHHHhCCCCc-ccEEECcCHHHHHHHHHHh--cCCCe-EEEcC--CC--cHHHHHHHHHCCCEEEeecccc---
Confidence 5889999999999742 2799999999999988653 46676 44322 21 2233455678899998887642
Q ss_pred ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHH---HhhCCcEEEEeccccCCCCCCCC-CCCCCCCc
Q 006746 253 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRI---AQENDWHILIDACALGPKDMDSF-GLSLVRPD 327 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~---a~~~g~~vlvDaaq~~g~~m~~l-dls~~~~D 327 (632)
+. +.+. ++++.++.-+|+||..++.+ +.++ +++++.++++|-+-.--....++ .+...+-=
T Consensus 125 ----~~----~~~~------~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~v 190 (339)
T PRK06959 125 ----DT----LPAA------LTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGL 190 (339)
T ss_pred ----hh----cccc------CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCE
Confidence 11 2222 35777888899999999988 6554 45678889999863321100111 11111112
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
+++.||-|.||.+---+|+++..++.++.+.
T Consensus 191 i~l~SfSK~~gl~GlRiGy~v~~~~li~~l~ 221 (339)
T PRK06959 191 VVLRSVGKFFGLAGVRAGFVLAAPALLAALR 221 (339)
T ss_pred EEEecChhhcCCcchheEEEecCHHHHHHHH
Confidence 7888999999963233699888777665543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-08 Score=116.77 Aligned_cols=177 Identities=11% Similarity=0.118 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHcCCCCC-CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 170 GLESAMKKRIMDFLNISEN-DYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~-ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+..+.+++.+++..|.+.+ +..|++|+++++++.++..++ .++||+|++.. .|+. ....++..|++++.+|.
T Consensus 734 dlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aL-l~pGD~VLVp~PtY~~-----Y~~~a~~~Ga~vv~Vpl 807 (1082)
T PLN02672 734 DPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCC-VQEGGTLCFPAGSNGT-----YVSAAKFLKANFRRIPT 807 (1082)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCChHH-----HHHHHHHcCCEEEEEec
Confidence 3457888889998888753 237999999999999999988 68999987654 3432 23446778999999998
Q ss_pred cC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccC-CCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 248 SW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHS-RMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 248 ~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~s-n~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
+. .+..++.++|++++.+.+ .+++.+...+ |+||..++.+ |+++|+++|+++++|-+-.. +....
T Consensus 808 ~~e~gf~lD~d~Le~al~~~~-----~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s 882 (1082)
T PLN02672 808 KSSDGFKLTAKTLASTLETVK-----KPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWG 882 (1082)
T ss_pred ccccCCCCCHHHHHHHhccCC-----CCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCc
Confidence 63 245678899999886422 1345555543 9999999866 46678999999999987531 21000
Q ss_pred CCCCC----CCC---C---cEEEEccccccCCCCCceEEEEEeCC-Ccccc
Q 006746 318 SFGLS----LVR---P---DFLICSFYQIFGENPSGFGCLFVKKS-TVPIL 357 (632)
Q Consensus 318 ~ldls----~~~---~---Df~~~S~hK~~G~~P~G~G~L~Vr~~-~~~~L 357 (632)
..++. .+. . =+++.|+-|.|+.+---+|+++..++ +++.+
T Consensus 883 ~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l 933 (1082)
T PLN02672 883 GWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAF 933 (1082)
T ss_pred ccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHH
Confidence 01110 111 1 14666899988853234588887544 44433
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-08 Score=109.48 Aligned_cols=340 Identities=14% Similarity=0.171 Sum_probs=193.4
Q ss_pred CCCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 106 LSNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 106 ~~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
.++..|||..+. |--.+.+++++.+.+... + ++ +.. ...+...+.-+++
T Consensus 72 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l----~-------~~----------~~~----~~~~~~~~lAe~L 126 (442)
T TIGR03372 72 TQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQ----P-------LH----------SQE----LLDPLRALLAKTL 126 (442)
T ss_pred CCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhC----C-------Cc----------ccc----cCCHHHHHHHHHH
Confidence 367889996544 555677888776544321 1 00 000 0123334566667
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhh---CCCCCCC-eEE-EeccccchhhHHHHHHHH----hcC-----CEEEEE
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAES---YPFMSVK-NLL-TVYDYESEAVEAMIRTSE----KRG-----ARVMSA 245 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~s---l~~~~gd-~il-t~~d~~s~~v~~~~~~a~----~~G-----~~v~~v 245 (632)
++++...- ..+.|+.++|+|...+.+- +--..|+ +|+ ....||......+ .... +.+ ..+..+
T Consensus 127 ~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~l-s~t~~~~~~~~~~p~~~~~~~~ 203 (442)
T TIGR03372 127 AALTPGKL--KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGAL-SATAKPAFRKPFMPLLPGFHHV 203 (442)
T ss_pred HHhCCCCc--CEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHh-hccCCcccCCCCCCCCCCCEEe
Confidence 77654321 2689999999998876543 2111344 355 4556886433222 1110 011 112333
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--CC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--MD 317 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~ 317 (632)
|++ |.+.+++.|.........+..|++.-+...-|...| ++ +.++|+++|+++++|-+|.+ |.. +-
T Consensus 204 p~~------d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~ 277 (442)
T TIGR03372 204 AFG------DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF 277 (442)
T ss_pred CCC------CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccch
Confidence 331 456777777531111235777888878888899998 88 89999999999999998853 321 10
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhh
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 397 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 397 (632)
........||+++ +=|-+|..-.-+|+++.+++.++.+....+ . +
T Consensus 278 a~e~~gv~PDivt--~gK~lg~G~~Pigavv~~~~i~~~~~~~~~--~----------~--------------------- 322 (442)
T TIGR03372 278 ACEHEGVQPDILC--LAKALGGGVMPIGATIATEAVFSVLFDNPF--L----------H--------------------- 322 (442)
T ss_pred hhhhcCCCCCeee--ehhhhcCCcccceEEEecHHHHHhhhccCc--c----------c---------------------
Confidence 1111234689877 568665200017888888877654421100 0 0
Q ss_pred hhccccCCCc-cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 398 KVAATNTFSG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 398 ~e~gt~~f~~-~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
.+ .|.+ +++. ..++ +.|+.+++. .+.+|.+.+.++
T Consensus 323 --~~--T~~gnp~~~------------Aaa~-------------------------a~L~~i~~~---~l~~~~~~~G~~ 358 (442)
T TIGR03372 323 --TT--TFGGNPLAC------------AAAL-------------------------ATINELLEK---NLPAQAAIKGDF 358 (442)
T ss_pred --cC--CCCCCHHHH------------HHHH-------------------------HHHHHHHhc---cHHHHHHHHHHH
Confidence 00 1110 1110 1111 567777654 466788888889
Q ss_pred HHHHHHccC--CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 477 LVNALMKLQ--HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 477 L~~~L~~l~--h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
|++.|.++. |+. ....+ .-+|.++.+.+.+.+ ....+.+.+.++||.+...
T Consensus 359 l~~~L~~l~~~~~~----~i~~v------RG~Gl~~giel~~~~----~~~~i~~~l~~~Gvl~~~~------------- 411 (442)
T TIGR03372 359 LLDGFQQLAAEYPD----LIIEA------RGKGLLMAIEFRDNE----IGYAFAKELFQQNILVAGT------------- 411 (442)
T ss_pred HHHHHHHHHHhCCC----ceEEE------ecceEEEEEEeCChH----HHHHHHHHHHHCCcEEeec-------------
Confidence 988888773 321 11222 135777877775421 1234444444578887521
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
..+..++|+++.+..|.+||+++++.+.+.|
T Consensus 412 -------------------------~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 412 -------------------------LNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred -------------------------CCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 0123589999999999999999999988753
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-08 Score=108.71 Aligned_cols=332 Identities=11% Similarity=0.119 Sum_probs=189.1
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+ .|.-.+.+++++.+.+.... . . ++. + ..+...+..++++
T Consensus 37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--------~---~------~~~-----~---~~~~~~~la~~l~ 91 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHAHPALREALNEQASKFW--------H---T------GNG-----Y---TNEPVLRLAKKLI 91 (406)
T ss_pred CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcc--------c---c------cCc-----c---CCHHHHHHHHHHH
Confidence 5678999866 56667778877665442210 0 0 000 0 1233457788888
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CC-CCeEE-EeccccchhhHHHHHHHHhcC---------CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MS-VKNLL-TVYDYESEAVEAMIRTSEKRG---------ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~-gd~il-t~~d~~s~~v~~~~~~a~~~G---------~~v~ 243 (632)
++++. + .+.|++++++|+..+..... + .+ ..+|+ ....||......+ ....... ..+.
T Consensus 92 ~~~~~--~--~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (406)
T PRK12381 92 DATFA--D--RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTV-SAGGQPKYSQDFAPLPPDIR 166 (406)
T ss_pred hhCCC--C--eEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHH-hhcCCcccccCCCCCCCCee
Confidence 88754 2 79999999999888766421 1 12 33455 4556776333221 1111000 0112
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc----chH-HHHHHhhCCcEEEEeccccC-CCC--
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYL-WMRIAQENDWHILIDACALG-PKD-- 315 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~----pl~-i~~~a~~~g~~vlvDaaq~~-g~~-- 315 (632)
.++. .|.+++++.|.++ +++|++.-+....|... .++ +.++|+++|+++++|-++.. |..
T Consensus 167 ~~~~------~d~~~l~~~l~~~------~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~ 234 (406)
T PRK12381 167 HAAY------NDLNSASALIDDQ------TCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE 234 (406)
T ss_pred EeCC------CCHHHHHHhccCC------eeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc
Confidence 2221 2578888888643 47777776655556443 355 77899999999999998742 221
Q ss_pred CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 316 MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 316 m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
+.........||++ ++=|.+|. -.=+|++..+++.++.+.+...+.+ |
T Consensus 235 ~~~~~~~~v~pDi~--t~sK~l~g-G~~ig~~~~~~~~~~~~~~~~~~~t----------~------------------- 282 (406)
T PRK12381 235 LYAYMHYGVTPDVL--TTAKALGG-GFPIGAMLTTEKCASVMTVGTHGTT----------Y------------------- 282 (406)
T ss_pred hhhhHhhCCCCCEE--EehhhhhC-CCceEEEEEcHHHHhhcCCCCCCCC----------C-------------------
Confidence 11111223468875 55696651 1127888888777655533111100 0
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~ 475 (632)
.+ .++ ...+. .++|+++.+ +.+.++.+.+.+
T Consensus 283 ----~~-----~pl-------------~~aaa------------------------~a~l~~l~~---~~~~~~~~~~~~ 313 (406)
T PRK12381 283 ----GG-----NPL-------------ASAVA------------------------GKVLELINT---PEMLNGVKQRHD 313 (406)
T ss_pred ----CC-----CHH-------------HHHHH------------------------HHHHHHHhh---ccHHHHHHHHHH
Confidence 00 000 01111 155666543 356788889999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
+|.+.|.++... .+.+ +. ....|.++.+.+.+... -....+.+.+.++||.+...
T Consensus 314 ~l~~~L~~l~~~----~~~~---~~--vrg~Gl~~~~~l~~~~~--~~~~~~~~~l~~~Gv~v~~~-------------- 368 (406)
T PRK12381 314 WFVERLNTINAR----YGLF---SE--IRGLGLLIGCVLNAEYA--GKAKQISQEAAKAGVMVLIA-------------- 368 (406)
T ss_pred HHHHHHHHHHhh----CCCE---EE--EecCeEEEEEEecCchh--hHHHHHHHHHHHCCcEEeeC--------------
Confidence 999999887311 1222 11 01245566666543110 02244555666788887421
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+...||+++.+..|.+||+++++.|+++++.
T Consensus 369 --------------------------g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 399 (406)
T PRK12381 369 --------------------------GPNVVRFAPALNISEEEITTGLDRFARACER 399 (406)
T ss_pred --------------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 2258999999999999999999999998864
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-08 Score=109.76 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=105.6
Q ss_pred HHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCE-----
Q 006746 174 AMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGAR----- 241 (632)
Q Consensus 174 ~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~----- 241 (632)
+.|+.|++++ +++++ .|++|+|+++|+.++.. + +.+||+|++. -.|+. ....++..|++
T Consensus 80 ~LR~aia~~~~~~~g~~~~~~--~I~it~Ga~~al~~l~~-~-~~~gd~V~v~~P~Y~~-----~~~~~~~~g~~~~~~~ 150 (409)
T PRK07590 80 FLREKIAENDYQARGCDISAD--EIFISDGAKCDTGNILD-I-FGPDNTIAVTDPVYPV-----YVDTNVMAGRTGEANE 150 (409)
T ss_pred HHHHHHHHHHHHhcCCcCChh--hEEECCCHHHHHHHHHH-h-cCCCCEEEEeCCCCcc-----hHHHHHHcCCcccccc
Confidence 6788888875 56765 79999999999999764 4 4789997654 34442 23345667876
Q ss_pred ------EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc
Q 006746 242 ------VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL 311 (632)
Q Consensus 242 ------v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~ 311 (632)
++.++++. ++....+ + .. .+++++.++..+|+||..++.+ |+++|+++|+++++|-+..
T Consensus 151 ~~~~~~~~~v~~~~-~~~~~~d-~----~~-----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~ 219 (409)
T PRK07590 151 DGRYSGIVYLPCTA-ENNFVPE-L----PE-----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYE 219 (409)
T ss_pred cccccceeEeeccc-ccCCccc-C----cc-----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccch
Confidence 78888752 2112111 1 11 2458888888899999999976 4567889999999998632
Q ss_pred --CCCCCCCCCCCCC----CCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 312 --GPKDMDSFGLSLV----RPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 312 --~g~~m~~ldls~~----~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
......+..+... +.-+++.||-|.||.+-.-+|+++..++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~ 269 (409)
T PRK07590 220 AFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKG 269 (409)
T ss_pred hhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhh
Confidence 1110001112111 1136788999999863334688887766654
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.5e-08 Score=107.76 Aligned_cols=341 Identities=15% Similarity=0.166 Sum_probs=196.3
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..+. |--.+.+++++.+.+... + .+ +.. ...+...+.-++++
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l----~-------~~----------~~~----~~~~~~~~lae~L~ 134 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQ----P-------LH----------SQE----LLDPLRAMLAKTLA 134 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhC----c-------cc----------ccc----cCCHHHHHHHHHHH
Confidence 57889997544 555677888876644321 1 00 000 01233445666777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhh---CCCCCCC-eEE-EeccccchhhHHHHHHHHhcCCE---------EEEEe
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAES---YPFMSVK-NLL-TVYDYESEAVEAMIRTSEKRGAR---------VMSAE 246 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~s---l~~~~gd-~il-t~~d~~s~~v~~~~~~a~~~G~~---------v~~v~ 246 (632)
+++.... ..+.|++++|+|...+.+- +.-++|+ +|+ +...||......+ ...-....+ +..+|
T Consensus 135 ~~~p~~~--~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~l-s~~~~~~~~~~~~~~~~~~~~~~ 211 (459)
T PRK11522 135 ALTPGKL--KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGAL-SATAKSTFRKPFMPLLPGFRHVP 211 (459)
T ss_pred HhCCCCC--CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHh-hhcCCcccccCCCCCCCCCcccC
Confidence 7754322 2699999999998876653 3112233 355 4457776333222 111000000 11111
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--CCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--MDS 318 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~~ 318 (632)
. -+.+++++.|.........+..|++.-+....|...| ++ +.++|+++|+++++|-+|.+ |.. +-.
T Consensus 212 ~------~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a 285 (459)
T PRK11522 212 F------GNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFA 285 (459)
T ss_pred C------CCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhh
Confidence 1 1567888877642111235677888888888999998 88 88999999999999998853 210 101
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhh
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 398 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 398 (632)
.......||++++ =|.+|..-.-+|+++++++.++.+....+ ..
T Consensus 286 ~e~~gv~PDivt~--gK~lggG~~Pigav~~~~~i~~~~~~~~~-------------~~--------------------- 329 (459)
T PRK11522 286 CEHENVQPDILCL--AKALGGGVMPIGATIATEEVFSVLFDNPF-------------LH--------------------- 329 (459)
T ss_pred hhccCCCCCEEEe--chhhhCCCccceeEEEcHHHHHHhccCCc-------------cc---------------------
Confidence 1112236898744 68666200017999998876543321000 00
Q ss_pred hccccCCCc-cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHH
Q 006746 399 VAATNTFSG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477 (632)
Q Consensus 399 e~gt~~f~~-~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L 477 (632)
.+ .|.+ +++. ..+ .+.|+.+.+ +.+.+|++.+.++|
T Consensus 330 -~~--T~~gnp~~~------------Aaa-------------------------la~L~~i~~---~~l~~~~~~~g~~l 366 (459)
T PRK11522 330 -TT--TFGGNPLAC------------AAA-------------------------LATINVLLE---QNLPAQAEQKGDYL 366 (459)
T ss_pred -CC--CCCCCHHHH------------HHH-------------------------HHHHHHHhc---chHHHHHHHHHHHH
Confidence 00 1100 1110 111 156776654 34678999999999
Q ss_pred HHHHHccC--CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 478 VNALMKLQ--HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 478 ~~~L~~l~--h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
.+.|.++. |+. ....|- -+|.++.+.+.+.+ . ...+.+.+.++||.+...
T Consensus 367 ~~~L~~l~~~~~~----~i~~Vr------G~Gl~~giel~~~~---~-~~~i~~~l~~~Gvl~~~~-------------- 418 (459)
T PRK11522 367 LDGFRQLAREYPD----LVQEAR------GKGMLMAIEFVDNE---I-GYNFASEMFRQRVLVAGT-------------- 418 (459)
T ss_pred HHHHHHHHHhCCC----ceeeEE------eceeEEEEEecCch---H-HHHHHHHHHHCCeEEEec--------------
Confidence 99999883 321 011222 25778888776521 1 233444444578887521
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+..++|+++.+..|.+||+++++.+.+.|+.
T Consensus 419 ------------------------~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~ 451 (459)
T PRK11522 419 ------------------------LNNAKTIRIEPPLTLTIEQCEQVLKAARKALAA 451 (459)
T ss_pred ------------------------CCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 012359999999999999999999999988764
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.4e-08 Score=104.59 Aligned_cols=351 Identities=13% Similarity=0.127 Sum_probs=208.7
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+ .|--.+.+++++.+.+.... ..+....+ .+.+.+.-+++.
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~--------------------h~~~~~~~----~e~~v~~ae~L~ 109 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN--------------------HTHTRDLY----YEPYVELAEKLT 109 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh--------------------cccCCccc----chhHHHHHHHHH
Confidence 6789999887 45667888888766443211 11112111 133445566666
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCe-EE-EeccccchhhHHHHHHH----HhcC-----CEEEEEeccC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKN-LL-TVYDYESEAVEAMIRTS----EKRG-----ARVMSAEFSW 249 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~-il-t~~d~~s~~v~~~~~~a----~~~G-----~~v~~v~~~~ 249 (632)
+++-.+ ....+.|++++|+|...+++--....|.. |+ +...||......|.-.. ++.| ..|..+|...
T Consensus 110 ~~~p~~-~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~ 188 (447)
T COG0160 110 ALAPGS-GLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPN 188 (447)
T ss_pred HhCCcc-cCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCc
Confidence 666554 22369999999999999876654444544 55 56678864444332111 1111 2366666532
Q ss_pred Ccc-----------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HH----HHHhhCCcEEEEeccccC-
Q 006746 250 PRL-----------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WM----RIAQENDWHILIDACALG- 312 (632)
Q Consensus 250 ~~~-----------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~----~~a~~~g~~vlvDaaq~~- 312 (632)
+.. .-..+.+++.|.+.......+..+++--+....|...|-+ +. ++|+++|+++|+|-+|.+
T Consensus 189 ~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~ 268 (447)
T COG0160 189 PYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGF 268 (447)
T ss_pred cccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 111 1123445555554332344678888888999999998765 54 578899999999999987
Q ss_pred ---CCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 313 ---PKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 313 ---g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
|+ |-.+.-....||++++| |-+|. -.-+|+++.|++.+. +.+...+|+ |
T Consensus 269 GRTG~-~fa~E~~gv~PDivt~a--K~ig~-G~Pl~avv~r~ei~~-~~~g~~~~T----------f------------- 320 (447)
T COG0160 269 GRTGK-MFAFEHFGVEPDIVTLA--KSLGG-GLPLSAVVGRAEIMD-WPPGGHGGT----------F------------- 320 (447)
T ss_pred Ccccc-chhhhhcCCCCCEEEec--ccccC-CCceeEEeccHHhcc-cCCcccCCC----------C-------------
Confidence 32 22333333379998876 74442 223788898988765 433221111 1
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 469 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r 469 (632)
.|- +++ ...++ +.||.+.+ +++.+|
T Consensus 321 ----------~GN-----pva------------~Aaa~-------------------------AvL~vie~---e~L~~~ 345 (447)
T COG0160 321 ----------GGN-----PVA------------CAAAL-------------------------AVLDVIEE---ENLLER 345 (447)
T ss_pred ----------CcC-----HHH------------HHHHH-------------------------HHHHHHHH---ccHHHH
Confidence 000 000 01111 44554443 478899
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc-cCHH---HHHHHHHhCCcEEccCccCC
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEPV---LVQKLADRENISLSYGSLHH 545 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~-i~~~---~V~kla~~~gI~lr~G~~c~ 545 (632)
...+.++|+++|.+|+-.. | +.|+- .-+|-.+..-+.+..++. -+++ .|+..+.++|+.+.+
T Consensus 346 a~~~G~~l~~~L~~l~~~~----~---~IgdV--RG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~----- 411 (447)
T COG0160 346 AAELGEYLRDRLEELQEKH----P---LIGDV--RGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLT----- 411 (447)
T ss_pred HHHHHHHHHHHHHHHHhhc----C---ceecc--cccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEec-----
Confidence 9999999999999885322 3 23442 234566666655432221 1333 344455567876532
Q ss_pred hHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 546 IWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|+ ....+||+.+-+--+.|++|.+++.|.+.|..
T Consensus 412 --------------------~G-------------~~~nviRi~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 412 --------------------CG-------------PHGNVLRILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred --------------------cC-------------CCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 11 12469999999999999999999999987653
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-08 Score=107.70 Aligned_cols=164 Identities=11% Similarity=0.106 Sum_probs=111.3
Q ss_pred HHHHHHHHHcC------CCCCCccEE--EeCCHHHHHHHHHh---hCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCE
Q 006746 174 AMKKRIMDFLN------ISENDYGMV--FTANRTSAFKLLAE---SYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 174 ~~R~~ia~~l~------a~~~ey~vv--ft~naT~al~lv~~---sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~ 241 (632)
+.|+.|++++. ++++ +|+ .|.++++|+.++.. .+ .++||+|++.. .|+ .....++..|++
T Consensus 76 ~lR~aia~~~~~~~~~~~~~~--~v~~~~t~G~~~al~~~~~~l~~~-~~~Gd~Vlv~~P~y~-----~~~~~~~~~G~~ 147 (404)
T PTZ00376 76 SFIEAAQKLLFGEASYALAEK--RIATVQALSGTGALRLGFEFLKRF-LPAGTTVYVSNPTWP-----NHVNIFKSAGLN 147 (404)
T ss_pred HHHHHHHHHhcCCCccccccC--eEEEeeccCcchHHHHHHHHHHHh-cCCCCEEEEcCCCch-----hHHHHHHHcCCc
Confidence 67888888652 2444 576 48899999998875 44 58999977543 444 224456788999
Q ss_pred EEEEeccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEecccc--CCC
Q 006746 242 VMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACAL--GPK 314 (632)
Q Consensus 242 v~~v~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq~--~g~ 314 (632)
++.++... .+..++.+.+++.+...+ +++++++++..+|+||..++.+ + +++|+++|+++++|-+-. ...
T Consensus 148 ~~~v~l~~~~~~~~d~~~l~~~~~~~~---~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~ 224 (404)
T PTZ00376 148 VKEYRYYDPKTKGLDFDGMLEDLRTAP---NGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASG 224 (404)
T ss_pred eeeccccCcccCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCC
Confidence 99999832 346789999999886421 2347888999999999999876 4 667889999999998632 110
Q ss_pred C----CCC-CCCCCCC-CcEEEEccccccCCCCCceEEEE
Q 006746 315 D----MDS-FGLSLVR-PDFLICSFYQIFGENPSGFGCLF 348 (632)
Q Consensus 315 ~----m~~-ldls~~~-~Df~~~S~hK~~G~~P~G~G~L~ 348 (632)
. -.+ ..+.... -=+++.||-|.||.+---+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~ 264 (404)
T PTZ00376 225 DLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALH 264 (404)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEE
Confidence 0 000 1111111 12788999999995323467774
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=114.04 Aligned_cols=215 Identities=13% Similarity=0.118 Sum_probs=147.0
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
.+.|-.-+-|-++++...++++...++.. .|+ . +...+....++.+.....+.++.
T Consensus 26 ~G~v~~t~lG~s~~~~e~iea~~~~~~~~--------------------v~L-e---~~l~~g~~~~R~~~~~~~~~~~~ 81 (395)
T COG1921 26 IGTVLMTNLGRSLYSPEAIEAMKEAMRAP--------------------VEL-E---TDLKTGKRGARLTELAELLCGLT 81 (395)
T ss_pred hhhheeccCCCccCCHHHHHHHHHHhccc--------------------cee-e---eecccchhhHHHHHHHHHHhccc
Confidence 45566777888999999999876644321 122 0 11122344445554455555555
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccch-hhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESE-AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~-~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
.. +.++.++|.+.|+-++..++. ++.+++..+.|.-+ ....+-+..+.-|++++.+.- ..+.+..+++.+|.+
T Consensus 82 ~a-ea~~ivnnn~aAVll~~~al~--~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~---tn~t~~~d~~~AIne 155 (395)
T COG1921 82 GA-EAAAIVNNNAAAVLLTLNALA--EGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGT---TNRTHLKDYELAINE 155 (395)
T ss_pred ch-hheeeECCcHHHHHHHHhhhc--cCCeEEEEccccccCCCCChhHHHHHcCCEEEEecc---cCcCCHHHHHHHhcc
Confidence 33 267788999999998888873 35565544432221 222344556677999887753 345788999999998
Q ss_pred cCcCCCceeEEEEeccCCCCccc--cchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEEEccccccCC
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGAR--YPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLICSFYQIFGE 339 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~--~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls---~~~~Df~~~S~hK~~G~ 339 (632)
++ .+....|.+|. |.. .+.+ ++++||++|+++++|+++....+ ..-++. +.++|.+++|++|+||.
T Consensus 156 ~t------a~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKllgG 227 (395)
T COG1921 156 NT------ALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKLLGG 227 (395)
T ss_pred CC------eeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchhcCC
Confidence 76 67777777765 554 6788 99999999999999999866532 123333 35899999999999886
Q ss_pred CCCceEEEEEeCCCccccCCCC
Q 006746 340 NPSGFGCLFVKKSTVPILVDNT 361 (632)
Q Consensus 340 ~P~G~G~L~Vr~~~~~~L~~~~ 361 (632)
|+ .|++.-||+.+++++...
T Consensus 228 -Pq-aGii~GkKelI~~lq~~~ 247 (395)
T COG1921 228 -PQ-AGIIVGKKELIEKLQSHP 247 (395)
T ss_pred -Cc-cceEechHHHHHHHHhhh
Confidence 76 899999999998887653
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-07 Score=99.41 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=104.6
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
...|+.+++++|. +|++|+|+++|+.+++..+ .+||+|++.. .|. .....++..|+++..++
T Consensus 43 ~~l~~~ia~~~~~-----~I~vt~G~~~al~~~~~~~--~~gd~vlv~~P~y~-----~~~~~~~~~g~~~~~~~----- 105 (311)
T PRK08354 43 EWLEEEFSKLFGE-----PIVITAGITEALYLIGILA--LRDRKVIIPRHTYG-----EYERVARFFAARIIKGP----- 105 (311)
T ss_pred HHHHHHHHHHHCC-----CEEECCCHHHHHHHHHHhh--CCCCeEEEeCCCcH-----HHHHHHHHcCCEEeecC-----
Confidence 4678999999983 5999999999999988654 4799977543 333 33556778899986553
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEeccccC-CCCCCCCCCCCCCC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACALG-PKDMDSFGLSLVRP 326 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq~~-g~~m~~ldls~~~~ 326 (632)
++++.+++.+.+ +++++++..+|+||..++.+ + ++.|+++|+++++|-+-.- ..+-..++ ..-
T Consensus 106 --~d~~~l~~~~~~-------~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~---~~~ 173 (311)
T PRK08354 106 --NDPEKLEELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPE---GEN 173 (311)
T ss_pred --CCHHHHHHhhcC-------CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccC---CCc
Confidence 467788777652 25777888889999999866 4 5667889999999997422 11101111 233
Q ss_pred cEEEEccccccCCCCCceEEEEE
Q 006746 327 DFLICSFYQIFGENPSGFGCLFV 349 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~V 349 (632)
-+++.|+-|.||.+---+|+++.
T Consensus 174 vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 174 IIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred EEEEeccHhhcCCccceeeeeee
Confidence 58889999999963223588776
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.8e-08 Score=106.72 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=112.4
Q ss_pred HHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.|++++. +++++..|+.|+|+++|+.+++..+. ..+||+|++.. .|+. ....++..|++++.+
T Consensus 73 ~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~-----~~~~~~~~g~~~v~v 147 (396)
T PRK09257 73 AYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPN-----HRAIFEAAGLEVKTY 147 (396)
T ss_pred HHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCccc-----HHHHHHHcCCcEEEE
Confidence 67777777752 23442224999999999999987764 47899987643 4442 234566789999999
Q ss_pred ec-cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc-CCCC----
Q 006746 246 EF-SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL-GPKD---- 315 (632)
Q Consensus 246 ~~-~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~-~g~~---- 315 (632)
+. +..+..++.+++++.+.... .+..+++++..+|+||..++.+ |+++|+++|++++.|-+-. ...+
T Consensus 148 ~~~~~~~~~~d~~~l~~~~~~~~---~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~ 224 (396)
T PRK09257 148 PYYDAATKGLDFDAMLADLSQAP---AGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEED 224 (396)
T ss_pred eccccccCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHH
Confidence 87 32345689999998887421 2247888899999999999876 4667889999999998632 1110
Q ss_pred CCCC-CCCCC-CCcEEEEccccccCCCCCce--EEEEE
Q 006746 316 MDSF-GLSLV-RPDFLICSFYQIFGENPSGF--GCLFV 349 (632)
Q Consensus 316 m~~l-dls~~-~~Df~~~S~hK~~G~~P~G~--G~L~V 349 (632)
..++ .+... .-=+++.||-|.|| |+|+ |++++
T Consensus 225 ~~~~~~~~~~~~~vi~i~SfSK~~~--~~GlRiG~~~~ 260 (396)
T PRK09257 225 AYGLRAFAAAGLELLVASSFSKNFG--LYGERVGALSV 260 (396)
T ss_pred HHHHHHHHhcCCcEEEEEEcCCcCc--cccccceeEEE
Confidence 0010 01111 11377899999999 4454 77764
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-08 Score=104.16 Aligned_cols=147 Identities=12% Similarity=0.144 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
.....+.++++-|+.. .++| +++..|+..+...+ ...|++|+. ..-|. ....-|.++..+.|+++..+..+
T Consensus 79 ~~~le~~iaal~ga~~---~l~f-sSGmaA~~~al~~L-~~~g~~iV~~~~~Y~-gT~~~l~~~~~~~gie~~~vd~~-- 150 (409)
T KOG0053|consen 79 RDVLESGIAALEGAAH---ALLF-SSGMAAITVALLHL-LPAGDHIVATGDVYG-GTLRILRKFLPKFGGEGDFVDVD-- 150 (409)
T ss_pred hHHHHHHHHHHhCCce---EEEe-cccHHHHHHHHHHh-cCCCCcEEEeCCCcc-cHHHHHHHHHHHhCceeeeechh--
Confidence 3456778899999862 3444 56666666666666 477899764 44444 35667788889999999888664
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL 329 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~ 329 (632)
+.+++++.+.++ +++|.+-..+|++....||+ +.++||++|+.|+||.+=..|....+|.+ ++|.+
T Consensus 151 ----~~~~~~~~i~~~------t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~l---GADIV 217 (409)
T KOG0053|consen 151 ----DLKKILKAIKEN------TKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPL---GADIV 217 (409)
T ss_pred ----hHHHHHHhhccC------ceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhc---CCCEE
Confidence 567888888764 59999999999999999999 99999999999999998666643345554 78999
Q ss_pred EEccccccCC
Q 006746 330 ICSFYQIFGE 339 (632)
Q Consensus 330 ~~S~hK~~G~ 339 (632)
+-|.-|++|.
T Consensus 218 ~hSaTKyi~G 227 (409)
T KOG0053|consen 218 VHSATKYIGG 227 (409)
T ss_pred EEeeeeeecC
Confidence 9999998884
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-07 Score=102.20 Aligned_cols=349 Identities=11% Similarity=0.099 Sum_probs=191.8
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..++ |--.+.+.+++.+.+..... .. .. +. ..+...+.-+++.
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~------~~-----------~~-----~~--~~~~~~~la~~L~ 94 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIH------YT-----------PI-----YG--FPVEPLLLAEKLI 94 (443)
T ss_pred CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccC------cc-----------cc-----cc--CcHHHHHHHHHHH
Confidence 67889997554 55567777776654432100 00 00 00 1122335555677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHHHH----Hhc--C--CEEEEEeccCC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIRTS----EKR--G--ARVMSAEFSWP 250 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~~a----~~~--G--~~v~~v~~~~~ 250 (632)
+.+...- ..|.|+.++|+|...+++--. +....+|++ ...||......+.-.. .+. | ..+..+|....
T Consensus 95 ~~~p~~~--~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (443)
T PRK08360 95 EIAPGDN--PKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDC 172 (443)
T ss_pred HhCCCCC--CEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCcc
Confidence 7765431 269999999999887654321 222334654 4467763322221000 000 1 12344443210
Q ss_pred c----cc-------cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-C
Q 006746 251 R----LR-------INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-P 313 (632)
Q Consensus 251 ~----~~-------i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g 313 (632)
. .. -+.+.+++.|.... ...++..|.+.-+.+.+|...| ++ +.++|+++|+++++|-++.. |
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 251 (443)
T PRK08360 173 YRCPFGKEPGSCKMECVEYIKEKFEGEV-YAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLG 251 (443)
T ss_pred ccccccCchhhhHHHHHHHHHHHHHhcc-CCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 0 00 12344555664311 1235777777778899999887 66 78899999999999998763 3
Q ss_pred CC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 314 KD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 314 ~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
.. +.........||+++ +=|.+|. .--+|++..+++.++.+.....+.+ +
T Consensus 252 r~G~~~a~~~~~~~pDiit--lsK~l~~-G~pigav~~~~~i~~~~~~~~~~~T----------~--------------- 303 (443)
T PRK08360 252 RTGKWFAIEHFGVEPDIIT--LGKPLGG-GLPISATIGRAEIMDSLPPLAHAFT----------L--------------- 303 (443)
T ss_pred cCccchhhhhcCCCCCEEE--ecccccC-CceeEEEEEcHHHHhhhcCCCCCCC----------C---------------
Confidence 21 111111234689775 4797772 1127898888777665532111000 0
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGR 471 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~ 471 (632)
.+. ++ ....+ .++|+.+.+. .+.+|++
T Consensus 304 --------~~~-----p~------------~~aaa-------------------------~a~l~~l~~~---~l~~~~~ 330 (443)
T PRK08360 304 --------SGN-----PV------------ASAAA-------------------------LAVIEEIEEK---NLLKRAE 330 (443)
T ss_pred --------CcC-----HH------------HHHHH-------------------------HHHHHHHHHc---CHHHHHH
Confidence 000 00 00111 1566666543 4678888
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc-cCH---HHHHHHHHhCCcEEccCccCChH
Q 006746 472 CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEP---VLVQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 472 ~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~-i~~---~~V~kla~~~gI~lr~G~~c~~~ 547 (632)
.+..+|++.|.++.... |.+ +. . ..+|-++.+.+.+..... -+. ..+.+.+.++||.++.
T Consensus 331 ~~g~~l~~~L~~l~~~~----~~v---~~-v-rg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~------- 394 (443)
T PRK08360 331 KLGNYTKKRLEEMKKKH----ELI---GD-V-RGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTF------- 394 (443)
T ss_pred HHHHHHHHHHHHHHHhC----CCe---ee-e-eccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEee-------
Confidence 99999999888773211 322 11 1 235667777665321111 011 2344444557777641
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+..++|+++.+..|.+||+.+++.+.+.|+.
T Consensus 395 ---------------------------------~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~ 426 (443)
T PRK08360 395 ---------------------------------FSGNVLRIQPPLTIEKEVLDEGLDILEEAIED 426 (443)
T ss_pred ---------------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 02258999999999999999999999998865
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-08 Score=109.07 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc---
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS--- 248 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~--- 248 (632)
+.+..+++++++|.+ .+++|+|+|.|++++. .+.+++||+| .+..|.. .... ..+..|+.+.-++.+
T Consensus 73 ~~~lE~~va~~~G~~----~av~v~sGT~Al~ll~-~l~l~pGDeV-psn~~f~-Tt~a---hIe~~Gav~vDi~~dea~ 142 (450)
T TIGR02618 73 FYHLERTVRELYGFK----YVVPTHQGRGAENLLS-QIAIKPGDYV-PGNMYFT-TTRY---HQEKNGATFVDIIIDEAH 142 (450)
T ss_pred HHHHHHHHHHHHCCC----eEEEcCCHHHHHHHHH-HhCCCCcCEE-CCceeHH-HHHH---HHHhCCeEEEeeeccccc
Confidence 347888999999986 4899999999999875 5558999987 4444433 1211 125578766555432
Q ss_pred ------CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccc---hH-HHHHHhhCCcEEEEeccccCCCCC-
Q 006746 249 ------WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYP---YL-WMRIAQENDWHILIDACALGPKDM- 316 (632)
Q Consensus 249 ------~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~m- 316 (632)
..++.+|+++|+++|+++. ..++.++++....|.. |...| ++ +.++|+++|+.+++|+|++++...
T Consensus 143 ~~~~~~p~~GniD~~~Le~aI~~~~--~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~ 220 (450)
T TIGR02618 143 DAQLNIPFKGNVDLKKLQKLIDEVG--ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYF 220 (450)
T ss_pred ccccCCCCCCCcCHHHHHHHhcccc--CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhh
Confidence 2357899999999998642 2244577777767765 78765 56 788999999999999999885310
Q ss_pred ------CCCCCCC--------CCCcEEEEccccccCCCCCceEEEEEeC-CCcccc
Q 006746 317 ------DSFGLSL--------VRPDFLICSFYQIFGENPSGFGCLFVKK-STVPIL 357 (632)
Q Consensus 317 ------~~ldls~--------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~-~~~~~L 357 (632)
.-.|.+. ...|.+.+|+||-++. |.| |+|..++ ++.+++
T Consensus 221 I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~-~~G-G~l~~~d~~l~~k~ 274 (450)
T TIGR02618 221 IKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLV-NIG-GFLCMNDDEMFQSA 274 (450)
T ss_pred hhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCC-CCc-eEEEeCCHHHHHHH
Confidence 0112111 1479999999997776 642 3333354 333433
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-07 Score=101.94 Aligned_cols=306 Identities=11% Similarity=0.155 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHHH-----HhcC----
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRTS-----EKRG---- 239 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~a-----~~~G---- 239 (632)
...+.-++|.+.+..+. ...|.|+.++|+|...+.+.-..-.|+ +|++ ...||......|. .. .+.+
T Consensus 98 ~~~~lAe~L~~~~p~~~-~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls-~t~~~~~~~~~~~~~ 175 (441)
T PRK05769 98 PAVELAERLVEIAPGGF-EKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLS-LTASKPVQRKGFFPL 175 (441)
T ss_pred HHHHHHHHHHHhCCCCC-CCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHH-hcCCCcccccCCCCC
Confidence 33466667777664221 137999999999998766532222344 4664 4467763332221 11 0000
Q ss_pred -CEEEEEeccCCccc-------------cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhC
Q 006746 240 -ARVMSAEFSWPRLR-------------INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQEN 300 (632)
Q Consensus 240 -~~v~~v~~~~~~~~-------------i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~ 300 (632)
..+..++... ... -+.+.+++.+.+.......+..|++-.+....|...| ++ +.++|+++
T Consensus 176 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~ 254 (441)
T PRK05769 176 MPGVIHVPYPN-PYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKY 254 (441)
T ss_pred CCCeEEeCCCc-cccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 1233343310 000 0123355523221001235788888888888999999 88 99999999
Q ss_pred CcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccc
Q 006746 301 DWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWL 377 (632)
Q Consensus 301 g~~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~ 377 (632)
|+++++|-++.+ |.. +.....-...||++++| |.+|. ...+|++..+++.+..+ +...+++ |
T Consensus 255 g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~--K~l~~-G~p~gav~~~~~i~~~~-~~~~~~T----------~- 319 (441)
T PRK05769 255 GILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLA--KAIAG-GLPLGAVIGRAELMFLP-PGSHANT----------F- 319 (441)
T ss_pred CCEEEEechhhCCCcccceehhhccCCCCCEEEEc--ccccC-CcccEEEEEehhhhhcC-CCCCCCC----------C-
Confidence 999999998763 321 10111112368998765 85552 22378888888775322 1110000 0
Q ss_pred ccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHH
Q 006746 378 TDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ 457 (632)
Q Consensus 378 ~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~ 457 (632)
.| .+++ ...+ .++|+.
T Consensus 320 ----------------------~g-----~p~~------------~aaa-------------------------~a~L~~ 335 (441)
T PRK05769 320 ----------------------GG-----NPVA------------AAAA-------------------------LATLEE 335 (441)
T ss_pred ----------------------Cc-----CHHH------------HHHH-------------------------HHHHHH
Confidence 00 0000 0111 156776
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCH---HHHHHHHHhC
Q 006746 458 VDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP---VLVQKLADRE 534 (632)
Q Consensus 458 ~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~---~~V~kla~~~ 534 (632)
+.+ .+.++++.+.++|++.|.++... .|.+ +. -.-+|.++.+.+.+...+. +. ..+.+.+-++
T Consensus 336 l~~----~~~~~~~~~g~~l~~~L~~l~~~----~~~~---~~--vrg~G~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~ 401 (441)
T PRK05769 336 LEE----GLLENAQKLGEYLRKELKELKEK----YEFI---GD--VRGLGLMIGVELVKDRKEP-DPKLRDKVLYEAFKR 401 (441)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHh----CCCe---ee--eecceEEEEEEeccCCccc-cHHHHHHHHHHHHhC
Confidence 654 56788999999999999887311 1322 11 1235677777664421111 11 2233344456
Q ss_pred CcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 535 NISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 535 gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
||.+.. .+..++|+++.+..|.+||+++++.+.+.|+.
T Consensus 402 Gil~~~----------------------------------------~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 402 GLLLLG----------------------------------------AGKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred CcEEec----------------------------------------CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 777631 12358999999999999999999999988753
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-08 Score=108.59 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=113.1
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEec-----
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEF----- 247 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~----- 247 (632)
.+..+.+++++|.+ .+++|+|+|.|++++ ..+..++||+| ....|... ... . ....|+...-+..
T Consensus 81 ~~LE~~vAe~lG~e----~aV~v~sGTaAl~ll-~~l~v~pGd~V-p~n~~f~T-t~a--h-I~~~Ga~fvDi~~d~a~~ 150 (460)
T PRK13237 81 YHLEETVQEYYGFK----HVVPTHQGRGAENLL-SRIAIKPGQYV-PGNMYFTT-TRY--H-QELNGGIFVDIIIDEAHD 150 (460)
T ss_pred HHHHHHHHHHHCCC----eEEEeCCHHHHHHHH-HHhCCCCcCEE-CCccchHh-hHH--H-HHhCCcEEEeeecccccc
Confidence 47788999999986 489999999999986 44557899975 44445431 111 1 2456775444421
Q ss_pred ----cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-cccc---chH-HHHHHhhCCcEEEEeccccCCCCC-C
Q 006746 248 ----SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARY---PYL-WMRIAQENDWHILIDACALGPKDM-D 317 (632)
Q Consensus 248 ----~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~---pl~-i~~~a~~~g~~vlvDaaq~~g~~m-~ 317 (632)
++.++.+|+++|+++|++++ ..+++|+++....|.. |... +++ +.++|+++|+.|++|||++++... +
T Consensus 151 ~~~~~p~tgnlD~d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI 228 (460)
T PRK13237 151 AQSDHPFKGNVDLDKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFI 228 (460)
T ss_pred cccCCCCCCCcCHHHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhh
Confidence 13467899999999998643 2456677777767777 5665 457 889999999999999999887210 0
Q ss_pred ------CCCCCC--------CCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 318 ------SFGLSL--------VRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 318 ------~ldls~--------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
--+-+. ...|.+++|+||-++. |. =|++..+++
T Consensus 229 ~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~-~~-GG~i~t~D~ 275 (460)
T PRK13237 229 KEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLV-NI-GGFLAMNDE 275 (460)
T ss_pred cccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCC-CC-ceEEEECCH
Confidence 011110 2469999999996664 43 255556554
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-07 Score=100.95 Aligned_cols=347 Identities=11% Similarity=0.075 Sum_probs=187.7
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+ .|--.+.+.+++.+.++.... .. +.....+...+.-++++
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~------~~------------------~~~~~~~~~~~la~~l~ 109 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTH------TC------------------FMVTPYEGYVAVAEQLN 109 (443)
T ss_pred CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccC------cc------------------ccccCCHHHHHHHHHHH
Confidence 6788999855 455567777776554332100 00 00001133345666677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHh---hCCCCCCCeEEE-eccccchhhHHHHHHH-----HhcCC-----EEEEEe
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAE---SYPFMSVKNLLT-VYDYESEAVEAMIRTS-----EKRGA-----RVMSAE 246 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~---sl~~~~gd~ilt-~~d~~s~~v~~~~~~a-----~~~G~-----~v~~v~ 246 (632)
+.+.... ...+.|+.++|+|...+.+ .+ ...++|++ ...||......| ... .+.+. .+..+|
T Consensus 110 ~~~p~~~-~~~v~f~~sGseA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~al-~~~~~~~~~~~~~~~~~~~~~~~~ 185 (443)
T PRK06058 110 RLTPGDH-EKRSALFNSGAEAVENAVKIARSY--TGRQAVVVFDHAYHGRTNLTM-ALTAKSMPYKSGFGPFAPEVYRAP 185 (443)
T ss_pred HhCCCCC-CCEEEEeCCcHHHHHHHHHHHHHh--hCCCeEEEECCCcCcChHHHH-hhcCCCcccccccCCCCCCceEcC
Confidence 7664221 1268999999999887665 44 33345664 456776332222 111 01111 122233
Q ss_pred ccCCccc-----cC-HHHHHH---HHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC
Q 006746 247 FSWPRLR-----IN-SEKLRK---MVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 247 ~~~~~~~-----i~-~~~l~~---~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~ 312 (632)
...+... .+ .+.+.+ .+.+.. ....+..|.+.-+....|...| ++ +.++|+++|+++++|-++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tG 264 (443)
T PRK06058 186 MSYPYRDPKGLATDGEEAAARAITVIEKQV-GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTG 264 (443)
T ss_pred CCcccccccccccchHHHHHHHHHHHHHhh-CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 2101000 00 011111 122110 0134677777777777788876 66 78899999999999998763
Q ss_pred -CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 313 -PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 313 -g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
|.. +-....-...||+++++ |.+|. --=+|+++.+++.++.+.+...+++ |
T Consensus 265 fgRtG~~fa~~~~gv~PDiv~~g--K~l~~-G~Pi~av~~~~~i~~~~~~~~~~~T----------~------------- 318 (443)
T PRK06058 265 FARTGAWFACEHEGIVPDLITTA--KGIAG-GLPLSAVTGRAEIMDAPHPGGLGGT----------Y------------- 318 (443)
T ss_pred CCcChhhhHHHhcCCCCCEEEEc--ccccC-CCccEEEEEcHHHHhhccCCCCCCC----------C-------------
Confidence 211 11112223478999887 95551 1117899998887665543211100 0
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 469 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r 469 (632)
. .|.....+. .+.|+.+.+ +.+.+|
T Consensus 319 ----------------~------------gnpl~~aaa------------------------~a~L~~~~~---~~l~~~ 343 (443)
T PRK06058 319 ----------------G------------GNPVACAAA------------------------LAAIETIEE---DDLVAR 343 (443)
T ss_pred ----------------C------------CCHHHHHHH------------------------HHHHHHHHH---cCHHHH
Confidence 0 000011111 156666554 356788
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC-CCccCHH---HHHHHHHhCCcEEccCccCC
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK-REKIEPV---LVQKLADRENISLSYGSLHH 545 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~-G~~i~~~---~V~kla~~~gI~lr~G~~c~ 545 (632)
.+.+.++|.++|.++.... +.+ +. -.-+|.++.+.+.+.. .+. +.+ .+.+.+.++||.+..+
T Consensus 344 ~~~~g~~l~~~L~~l~~~~----~~i---~~--vrg~G~~~~i~~~~~~~~~~-~~~~~~~l~~~~~~~Gv~~~~~---- 409 (443)
T PRK06058 344 ARQIEALMTDRLRALAAED----DRI---GD--VRGRGAMIAIELVKPGTTEP-DAELTKALAAAAHAAGVIVLTC---- 409 (443)
T ss_pred HHHHHHHHHHHHHHHHhhC----CcE---Ee--eeccceEEEEEEecCCCCCC-cHHHHHHHHHHHHHCCeEEecc----
Confidence 8888999999998873211 222 11 0235777777764421 111 222 2333334578877532
Q ss_pred hHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 546 IWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.. ...+||+.+.+..|.+||+.+++.|.++|.
T Consensus 410 ---------------------------------~~-~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~ 441 (443)
T PRK06058 410 ---------------------------------GT-YGNVIRLLPPLVIGDELLREGLDVLEAALA 441 (443)
T ss_pred ---------------------------------CC-CCCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 00 124899999999999999999999998875
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-07 Score=97.49 Aligned_cols=370 Identities=14% Similarity=0.122 Sum_probs=213.2
Q ss_pred CCCchhHHHHHHhhccCcCCCCceEeecCCCCCCCH---HHHH-HHhcCCCCCCCCCCCCCCCCcccccccccccccccc
Q 006746 87 YFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSY---NQLH-KQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL 162 (632)
Q Consensus 87 y~~~~~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~---~~~~-a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~ 162 (632)
..+.+.+.++|+- . .+|++|-.+.|.|.+.. +++. .+.. +|.+|- +|-.= ....
T Consensus 57 ~sE~e~l~~l~~i----a-~kN~~~~sfiG~GyY~~~~P~vI~rnile--------~pewyT-------aYTPY--QpEI 114 (450)
T COG0403 57 LSEYEALAELKEI----A-SKNKVFTSFIGAGYYDTYTPPVILRNILE--------NPEWYT-------AYTPY--QPEI 114 (450)
T ss_pred CCHHHHHHHHHHH----H-hcCchhhhhccCcccCCcCcHHHHHHhhc--------Cccccc-------cCCCC--chhh
Confidence 3444566666642 2 26778999999997763 4444 3222 132221 01000 0111
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCC--CCeEEEeccccchhhHHHHHHHHhcCC
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMS--VKNLLTVYDYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~--gd~ilt~~d~~s~~v~~~~~~a~~~G~ 240 (632)
..|. -+.+=+....|+++.|.+-.+ --.--.+|.+-+.+.-++...+ .++++++.+-|.+.+.-++..++-.|.
T Consensus 115 SQGr--LqaLfefQtlv~dLTGm~VAN--ASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~ 190 (450)
T COG0403 115 SQGR--LEALFEFQTLVADLTGLDVAN--ASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGI 190 (450)
T ss_pred hhHH--HHHHHHHHHHHHHHhCCCccc--chhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCce
Confidence 2232 244457889999999986432 2223467777777666665554 345777665555578888888888889
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCc-cccchH-HHHHHhhCCcEEEEec--cccCCCCC
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYPYL-WMRIAQENDWHILIDA--CALGPKDM 316 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG-~~~pl~-i~~~a~~~g~~vlvDa--aq~~g~~m 316 (632)
+|..++.+ +.+++++. .+. .+--+.+.+. |..| ...++. +.+.+|+.|.+++|=+ -++.=.
T Consensus 191 ~i~~~~~~------d~~~l~~~-~~~-----~~~gv~vQyP-~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL-- 255 (450)
T COG0403 191 EIEVVDAD------DLDDLESA-DDG-----DVFGVLVQYP-NTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLL-- 255 (450)
T ss_pred EEEEeccc------hhhhhhhc-ccc-----CeEEEEEecC-CCCCccchhHHHHHHHHhhcCCEEEEEechhHhhcc--
Confidence 98887764 56677766 331 2344444444 4778 666699 9999999999888733 332211
Q ss_pred CCCCCCCCCCcEEEEccccc-----cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 317 DSFGLSLVRPDFLICSFYQI-----FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~-----~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
-|- -+++.|+++++.+.+ ||. | ..|++-+|++...++.-...|=+++.
T Consensus 256 ~pP--Ge~GADIvvG~~QrfGvPmgfGG-P-hag~fA~~~~~~R~mPGRlVG~S~D~----------------------- 308 (450)
T COG0403 256 KPP--GEFGADIVVGSAQRFGVPMGFGG-P-HAGYFAVKDEFKRQMPGRLVGVSVDA----------------------- 308 (450)
T ss_pred CCc--cccCCceEEecCcccCCCcCCCC-c-ceeeeeEhHhHhhcCCCceeeeeecC-----------------------
Confidence 011 247889999999982 453 3 67899999987655544444411110
Q ss_pred chhhhhhhccccCCCccchhh---hhh-cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHH--HHHHhhCHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIE---MRQ-SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGL--DQVDSLGLTM 465 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~---~~~-~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aL--d~~~~~Gl~~ 465 (632)
.|.+.|.-.+..+ .|| --|.|+---++|- ...+++ -++-..|+.+
T Consensus 309 --------~G~~A~rLaLQTREQHIRReKATSNICTnQaLl---------------------A~~As~y~~~hGp~GLk~ 359 (450)
T COG0403 309 --------AGKRAFRLALQTREQHIRREKATSNICTNQALL---------------------ALAASMYAVYHGPQGLKE 359 (450)
T ss_pred --------CCCchhhhhHHHHHHHHhhhccchhhhHHHHHH---------------------HHHHHHHHHHhChHHHHH
Confidence 1222222111110 111 1345554434432 000221 2223358999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCC
Q 006746 466 ISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHH 545 (632)
Q Consensus 466 I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~ 545 (632)
|.+|+..++.+|.++|+++ + -++++.... .=-.+.+.+.. -....+.+.+...||-+|.
T Consensus 360 iA~r~~~~a~~la~~L~~~------~-~g~~~~~~~----fFdt~~v~~~~-----~~~~~l~~~~~~~G~~L~~----- 418 (450)
T COG0403 360 IAERIHRLAAYLAAGLKEI------G-AGVELVFDH----FFDTFTVRVPE-----EVAEALLAAAIAGGINLRR----- 418 (450)
T ss_pred HHHHHHHHHHHHHHHHhhc------C-CceEecccc----ceeeEEEecch-----hHHHHHHHHHHhcCCceee-----
Confidence 9999999999999999977 2 235555431 22233343331 0122333333345776652
Q ss_pred hHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 546 IWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
.....+=+|+---+|.+||+.||+.+...
T Consensus 419 -----------------------------------~~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 419 -----------------------------------VDADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred -----------------------------------ecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 01237778899999999999999987653
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-07 Score=103.95 Aligned_cols=352 Identities=13% Similarity=0.110 Sum_probs=194.2
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..+. |--.+.+++++.+.+..... .+.+ . + ..+...+.-++++
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~--------~~~~-----------~--~---~~~~~~~la~~L~ 102 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDY--------APAF-----------Q--M---GHPLAFELAERLA 102 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccC--------cccc-----------c--c---CCHHHHHHHHHHH
Confidence 57889998544 66677788877654432100 0000 0 0 1133345666777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCC-CeEE-EeccccchhhHHHH-----HHHHhcC---CEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSV-KNLL-TVYDYESEAVEAMI-----RTSEKRG---ARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~g-d~il-t~~d~~s~~v~~~~-----~~a~~~G---~~v~~ 244 (632)
+++... -..|.|+.++|+|+..+.+--. + +++ .+|+ ....||....-.|. ...+..+ ..+..
T Consensus 103 ~~~p~~--~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~ 180 (445)
T PRK09221 103 ELAPGG--LDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDH 180 (445)
T ss_pred HhCCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeE
Confidence 776422 1279999999999887665321 1 122 3465 45577753322211 0000011 11333
Q ss_pred EeccC--Ccc----------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEe
Q 006746 245 AEFSW--PRL----------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILID 307 (632)
Q Consensus 245 v~~~~--~~~----------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvD 307 (632)
+|... +.. ....+++++.|.... ...+..|++--+....|.+.| ++ +.++|+++|+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~D 258 (445)
T PRK09221 181 LPHTLDLPENAFSKGQPEHGAELADDLERLVALHD--ASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFD 258 (445)
T ss_pred eCCCccccccccCCChHHHHHHHHHHHHHHHHhcC--CCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 43320 000 001356777775321 135778888888888999999 88 999999999999999
Q ss_pred ccccC-CC--CCCCCCCCCCCCcEEEEccccccC--CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccC
Q 006746 308 ACALG-PK--DMDSFGLSLVRPDFLICSFYQIFG--ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 308 aaq~~-g~--~m~~ldls~~~~Df~~~S~hK~~G--~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
-+|.+ |. .+...+.....||+++++ |.+| +.| +|++.++++.++.+..... .. ..++ +
T Consensus 259 EV~tG~GRtG~~~~~~~~gv~PDi~~~g--K~l~gG~~P--i~av~~~~~i~~~~~~~~~-~~-------~~~~--~--- 321 (445)
T PRK09221 259 EVITGFGRLGAAFAAERFGVTPDIITFA--KGLTNGAIP--MGAVIASDEIYDAFMQGPE-YA-------IEFF--H--- 321 (445)
T ss_pred ehhhCCCcCchhhHHHhcCCCCCEEEec--cccccCccc--ceeeEEcHHHHHhhccCcc-cc-------cccc--c---
Confidence 98753 32 111112222368977654 7443 213 7888888877655532100 00 0000 0
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
..|.. ..+++ ..+. .+.|+.+.+.
T Consensus 322 -----------------~~T~~-~~pl~-------------~aaa------------------------~a~L~~i~~~- 345 (445)
T PRK09221 322 -----------------GYTYS-AHPVA-------------CAAG------------------------LATLDIYREE- 345 (445)
T ss_pred -----------------ccCCC-cCHHH-------------HHHH------------------------HHHHHHHHhc-
Confidence 01100 01111 1111 1567777654
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc-cCHHHHHHHHHhCCcEEccC
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEPVLVQKLADRENISLSYG 541 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~-i~~~~V~kla~~~gI~lr~G 541 (632)
.+.+|++.+.++|++.|.++. +.|.| ++ . .-+|-++.+.+.+..+.. .....+.+.+.++||.++.+
T Consensus 346 --~l~~~~~~~g~~l~~~l~~l~-----~~~~v---~~-v-rg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~ 413 (445)
T PRK09221 346 --DLFERAAELAPYFEDAVHSLK-----GLPHV---ID-I-RNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT 413 (445)
T ss_pred --cHHHHHHHHHHHHHHHHHhhc-----cCCCE---EE-E-ecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec
Confidence 457899999999999998872 11322 11 1 124555555554321111 11234445555678877521
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+||+++.+..|.+||+++++.|.+.|++
T Consensus 414 -----------------------------------------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 414 -----------------------------------------GDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred -----------------------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 138999999999999999999999988753
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-07 Score=100.45 Aligned_cols=171 Identities=11% Similarity=0.068 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcC-----CCCCC-ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFLN-----ISEND-YGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l~-----a~~~e-y~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.+++++. .++++ ..|++|+|+++++.+++..+ .++||+|++.. .|+. ... .++...|++++.+
T Consensus 47 ~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~-~~~---~~~~~~g~~vv~v 121 (388)
T PRK08637 47 PELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF-VDQGDTVLLPDHNWGN-YKL---TFNTRRGAEIVTY 121 (388)
T ss_pred HHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh-cCCCCEEEEcCCCCcc-HHH---HHHHhcCCEEEEe
Confidence 367777777652 33221 25899999999999999998 58999977543 4432 211 1223479999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhh-----CCcEEEEecccc----C
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQE-----NDWHILIDACAL----G 312 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~-----~g~~vlvDaaq~----~ 312 (632)
+...++..++++++++.++... ++...+++++..+|+||..++.+ + +++|++ +++++++|-+-. .
T Consensus 122 ~~~~~~~~~d~~~l~~~~~~~~--~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~ 199 (388)
T PRK08637 122 PIFDEDGGFDTDALKEALQAAY--NKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYE 199 (388)
T ss_pred cccCCCCcCCHHHHHHHHHhhc--cCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccC
Confidence 9832344689999999887210 11346788888899999999876 5 445553 899999998632 1
Q ss_pred CCCCCCC--CCCCCCCcE---EEEccccccCCCCCceEEEEEe
Q 006746 313 PKDMDSF--GLSLVRPDF---LICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 313 g~~m~~l--dls~~~~Df---~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
+..+.++ .+....... .+.|+-|.|+.+---+|.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 200 DSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred CccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 2211111 111111122 2348999877532345877764
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-08 Score=102.32 Aligned_cols=270 Identities=16% Similarity=0.168 Sum_probs=182.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC---CC-CC-C--eEEEeccccchhhHHHHHHHHhcCCE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP---FM-SV-K--NLLTVYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~---~~-~g-d--~ilt~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
.++..++-..++.+||+++++....+ .+.|+++-+.-..+. .+ .| + ++++... +...+..+++..+++
T Consensus 119 ~~~e~~~Vnm~~~L~~~~~~~~g~~t-~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~----v~~a~eK~a~yf~v~ 193 (491)
T KOG1383|consen 119 RKLEAECVNMIANLFNAPSDSCGCGT-VGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQN----VHAAFEKAARYFEVE 193 (491)
T ss_pred HHHHHHHHHHHHHHhcCCccccCccc-cccchHHHHHHHHHHHHHHhccCCCCccccchHH----HHHHHHHHHhhEEEE
Confidence 46778899999999999977555544 466777444333331 11 11 1 1333332 233446677888999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh-CCcEEEEeccccC---C-C-
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE-NDWHILIDACALG---P-K- 314 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~-~g~~vlvDaaq~~---g-~- 314 (632)
++.+|++..+.++|+.++.+.++++| .+++.+..+.++|..=|++ +++++.+ .++.+.|||+... | .
T Consensus 194 l~~V~~~~~~~~~D~~k~~~~i~eNt------i~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~ 267 (491)
T KOG1383|consen 194 LREVPLDEGDYRVDPGKVVRMIDENT------IMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGY 267 (491)
T ss_pred EEeeeccccceEecHHHHHHHhccce------EEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccc
Confidence 99999998888999999999999875 8999999999999999999 9999998 9999999997432 2 1
Q ss_pred -CCCCCCCCCCCCcEEEEcccc-ccCCCCCceEEEEEeCCCccccCCC------CCCCceeecccccccccccccCCCCC
Q 006746 315 -DMDSFGLSLVRPDFLICSFYQ-IFGENPSGFGCLFVKKSTVPILVDN------TSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 315 -~m~~ldls~~~~Df~~~S~hK-~~G~~P~G~G~L~Vr~~~~~~L~~~------~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
.+.++|+..-++--+.++.|| -|- |.|+|..+-|.+-+ +... |.||...
T Consensus 268 ~~~~~fdFr~p~V~Sisa~~HKYGl~--~~G~~~vl~r~k~~--~~~q~~~~~~w~Gg~y~------------------- 324 (491)
T KOG1383|consen 268 LNEEEFDFRVPGVTSISADGHKYGLA--PAGSSWVLYRNKEL--LPHQLFFHTDWLGGIYA------------------- 324 (491)
T ss_pred cCccccccCCCCceeEeeccceeeee--ecCcEEEEEccccc--ccceEEEeccccCcccc-------------------
Confidence 124678888888889999999 455 88999887776542 2222 2222110
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
.-|.+++ |+|..- +.++ ++|=.+-..|..+.
T Consensus 325 -------------s~TlngS--------R~g~~v---a~~w-------------------------a~~~~lG~eGY~~~ 355 (491)
T KOG1383|consen 325 -------------SPTLNGS--------RPGSQV---AAQW-------------------------AALMSLGEEGYREN 355 (491)
T ss_pred -------------CcccccC--------CcccHH---HHHH-------------------------HHHHHhhHHHHHHH
Confidence 1112221 122110 1122 23322333466677
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEE
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL 538 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~l 538 (632)
.+++..-+..|+++++++ +.+.|||+ |.|+|..++.+. ++-..+..++.+.|=.+
T Consensus 356 ~~~ive~~~~l~egie~i--------~~i~i~gk-------p~vs~~~~~s~~--~~i~elsd~l~~~GW~l 410 (491)
T KOG1383|consen 356 TQNIVETARKLREGIENI--------KGIKIVGK-------PLVSFILFGSND--VNIFELSDLLRKKGWIL 410 (491)
T ss_pred HHHHHHHHHHHHHhhhcc--------ccceecCC-------CcEEEEEccCCc--cchhhhhHHHHhcCcCc
Confidence 777888888999999988 56899987 568888887654 66667777777766444
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-07 Score=103.66 Aligned_cols=310 Identities=10% Similarity=0.058 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHHH---H-HhcC----
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIRT---S-EKRG---- 239 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~~---a-~~~G---- 239 (632)
+...+.-+++++++.- ....|.|++++++|...+++.-. +....+|+ ....||......|.-. . .+.+
T Consensus 86 ~~~~~la~~L~~~~~~--~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~ 163 (433)
T PRK08117 86 ESILKLAEELAEITPG--GLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPL 163 (433)
T ss_pred HHHHHHHHHHHHhCCC--CCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCC
Confidence 4445777888888732 22379999999999887665421 22223455 4456776333222100 0 0011
Q ss_pred -CEEEEEeccCCc----cc-------cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCc
Q 006746 240 -ARVMSAEFSWPR----LR-------INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDW 302 (632)
Q Consensus 240 -~~v~~v~~~~~~----~~-------i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~ 302 (632)
..+..+|..... +. .+.+++++.+.... ....+..|++--+....|.+.| ++ +.++|+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~ 242 (433)
T PRK08117 164 LGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGI 242 (433)
T ss_pred CCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 112334332100 00 13455666665311 1235778888888888999999 88 9999999999
Q ss_pred EEEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeeccccccccc
Q 006746 303 HILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWL 377 (632)
Q Consensus 303 ~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~ 377 (632)
++++|-++.+ |.. +....--...||+ .++=|.+| + | +|++..+++.++.+.....++
T Consensus 243 llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~sK~lg--~-G~pigav~~~~~i~~~~~~~~~~~------------- 304 (433)
T PRK08117 243 LLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIAKGIA--S-GLPLSAVVASKELMEQWPLGSHGT------------- 304 (433)
T ss_pred EEEEecchhccCccccchhHhhcCCCCCE--eehhhhcc--C-CCcceeEEEcHHHHhhccCCCCCC-------------
Confidence 9999998763 211 1001111235786 57779776 2 4 788888877665443211110
Q ss_pred ccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHH
Q 006746 378 TDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ 457 (632)
Q Consensus 378 ~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~ 457 (632)
| |.+ |.....+. .++|+.
T Consensus 305 ------------------------T--~~~------------np~~~aaa------------------------~a~L~~ 322 (433)
T PRK08117 305 ------------------------T--FGG------------NPVACAAA------------------------LATLEV 322 (433)
T ss_pred ------------------------C--CCc------------CHHHHHHH------------------------HHHHHH
Confidence 0 000 00001111 156665
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc--cCHHHHHHHHHhCC
Q 006746 458 VDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK--IEPVLVQKLADREN 535 (632)
Q Consensus 458 ~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~--i~~~~V~kla~~~g 535 (632)
+.+ +.+.++++.+.+++.+.|.++... .+.+ +. -..+|-++.+.+.+.+++. -....+.+.+.++|
T Consensus 323 l~~---~~l~~~~~~~g~~l~~~L~~l~~~----~~~~---~~--vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~G 390 (433)
T PRK08117 323 IKE---EKLLDNANEMGAYALERLEVLKEK----HPVI---GD--VRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKG 390 (433)
T ss_pred HHh---ccHHHHHHHHHHHHHHHHHHHHhc----CCce---ee--eecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCC
Confidence 543 356788888899999988887311 1211 10 1234556666665433221 11233445555678
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|.+... .....++|+++.+..|.+||+++++.|.+.++.
T Consensus 391 v~~~~~--------------------------------------g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 391 LLFYLC--------------------------------------GNAGNVLRMIPPLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred CEEeec--------------------------------------CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 876421 012358999999999999999999999988753
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-07 Score=94.23 Aligned_cols=309 Identities=16% Similarity=0.188 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCC-HHHHHHHHHhhCC-CCCCCe---EEEeccccchhhHHHHHHHHhcCCEE
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTAN-RTSAFKLLAESYP-FMSVKN---LLTVYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~n-aT~al~lv~~sl~-~~~gd~---ilt~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
...+++++...+.+++|+| ++|.|+|.++ +|..+..+.-.+- ++.|+. |+|-. - | -.. .+-|++.|.--
T Consensus 50 f~kii~~tes~lreLlniP-dn~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGs-W-S--~KA-~~EAkk~~~~~ 123 (370)
T KOG2790|consen 50 FAKIINDTESLLRELLNIP-DNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGS-W-S--AKA-AEEAKKYGTPN 123 (370)
T ss_pred HHHHHHHHHHHHHHHHcCC-CceeEEEEeCCCcccccccchhhhccccCCccceEEecc-c-c--HHH-HHHHHhhCCce
Confidence 4689999999999999998 5689999874 6666666655542 355543 44321 1 1 111 23356777653
Q ss_pred EEEe-ccC-Ccccc-CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCC
Q 006746 243 MSAE-FSW-PRLRI-NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSF 319 (632)
Q Consensus 243 ~~v~-~~~-~~~~i-~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~l 319 (632)
..++ ... .-+.+ +.+.++ +++ .-+.+-++....+-|+-+|-- ..---+|..++.|.++-.-. .++
T Consensus 124 ~V~~~~k~y~ygkvPd~~~w~--~~~------da~yvyyCaNETVHGVEf~~~--P~~~~~~~vlVaDmSSnflS--rpv 191 (370)
T KOG2790|consen 124 IVIPKLKSYTYGKVPDPSTWE--LNP------DASYVYYCANETVHGVEFDFI--PVNDPKGAVLVADMSSNFLS--RPV 191 (370)
T ss_pred EEeccccccccCcCCChhhcc--cCC------CccEEEEecCceeeceecCCC--CCCCCCCceEEEecccchhc--CCc
Confidence 3333 221 11123 333332 122 236899999999999887531 11134688899999765533 499
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
|++++ +.+....+|-.| |.|+-+.+||++++....+.... + .. |-...++ ..+
T Consensus 192 Dvsk~--gvi~aGAQKN~G--~aG~Tvvivr~dllg~~~~~tP~--v---~d---yk~~~~N-----------nSl---- 244 (370)
T KOG2790|consen 192 DVSKF--GVIFAGAQKNVG--PAGVTVVIVRKDLLGNALDITPS--V---LD---YKIMDKN-----------NSL---- 244 (370)
T ss_pred cchhc--ceEEeccccccC--ccccEEEEEehhhhcccccCCcc--c---cc---eeeeccc-----------ccc----
Confidence 99876 567788999999 99999999999998654432210 0 00 0000000 000
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLV 478 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~ 478 (632)
-.|+| +..|+.++ ..|+++.+- |+..+++-...-+..|+
T Consensus 245 yNTpP----------------~f~iy~~~------------------------Lv~~~il~~GGl~a~e~~n~~KskllY 284 (370)
T KOG2790|consen 245 YNTPP----------------CFGIYVMG------------------------LVFEWILEKGGLAAMEKLNQEKSKLLY 284 (370)
T ss_pred ccCCC----------------eeeeeehh------------------------hHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 12232 33344444 678877664 69999999999999999
Q ss_pred HHHHccCCCCCCCCCcEEEECCCCCCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 479 NALMKLQHPNTEGNALVKIYGPKIRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 479 ~~L~~l~h~~~~G~p~v~Iygp~~~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
+.+.+-+ |. -+.|-++..|+ =-|.|.+.+.. ++.+.+.+.++++=|++.
T Consensus 285 d~iD~s~-----gf----y~cpVe~~~RS~MNV~Fri~~d~---Le~eFLkeA~~~~mv~LK------------------ 334 (370)
T KOG2790|consen 285 DAIDNSN-----GF----YRCPVEPSVRSRMNVPFRIEKDE---LEAEFLKEAAKEHMVQLK------------------ 334 (370)
T ss_pred HHHHhcC-----Ce----EEcccchhhhhhcccceeecchH---HHHHHHHHHHHhhhhccc------------------
Confidence 9998752 22 12343334444 34667776421 455555555444333331
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+..|.+|+|+----+.|++++|++|+++|...
T Consensus 335 ---------------------GhRSVGGiRASlYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 335 ---------------------GHRSVGGIRASLYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred ---------------------cccccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence 3445789999998888999999999999999653
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-07 Score=104.55 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=102.7
Q ss_pred ccEEEeCCHHHHHHHHHhhC----CCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCC-c-----cccCHHH
Q 006746 190 YGMVFTANRTSAFKLLAESY----PFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWP-R-----LRINSEK 258 (632)
Q Consensus 190 y~vvft~naT~al~lv~~sl----~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~-~-----~~i~~~~ 258 (632)
.+|+.|+|+++||..+..++ -..+||+|++.. .|+. +..+.+. ...|++++.++.+.. . ..++.++
T Consensus 156 ~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~--y~~~~~l-~~~g~~vv~i~~~~~~~~g~~~~~~d~~~ 232 (521)
T TIGR03801 156 FDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTP--YLEIPEL-PRYDFEVVRIKADEMTEDGTHTWQYPDKE 232 (521)
T ss_pred CeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHH--HHHHHHH-hcCCcEEEEeecccccccccccCCCCHHH
Confidence 37999999999999988873 268999987543 4432 2121221 235788888876522 1 5678899
Q ss_pred HHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhC--CcEEEEecccc--CCCCCCCCCCCCCC-CcEE
Q 006746 259 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQEN--DWHILIDACAL--GPKDMDSFGLSLVR-PDFL 329 (632)
Q Consensus 259 l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~--g~~vlvDaaq~--~g~~m~~ldls~~~-~Df~ 329 (632)
++++++++ ++++.+..-+|+||..++. + |+++|+++ ++++|.|-+-. .. +..++ ++... -=++
T Consensus 233 l~~~~~~~------~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~~~sl-~~~~~~~vI~ 304 (521)
T TIGR03801 233 LEKLRDPS------IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD-DFRSL-FAELPYNTIG 304 (521)
T ss_pred HHHhcCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc-cccch-hhhCCCCEEE
Confidence 98876553 4888888889999999994 4 56778875 89999998632 22 11121 11111 1378
Q ss_pred EEccccccCCCCCceEEEEEeCC
Q 006746 330 ICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 330 ~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
+.|+-|.||.+---+|+++..++
T Consensus 305 v~SfSK~fg~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 305 VYSFSKYFGATGWRLGTIALHKD 327 (521)
T ss_pred EEcchhhccCchhhhhhhhcCch
Confidence 88999999964344688888764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-07 Score=95.38 Aligned_cols=295 Identities=12% Similarity=0.163 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CC--CC-CeEEE-eccccchhhHHHH---HHHHhcCCE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FM--SV-KNLLT-VYDYESEAVEAMI---RTSEKRGAR 241 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~--~g-d~ilt-~~d~~s~~v~~~~---~~a~~~G~~ 241 (632)
+...+.-+++.+..+ ..+ .|.|++|+|||++.++.--. |. ++ .+|++ ...+|.-..-.+. +-..+++..
T Consensus 84 ~~~~~la~~L~~~s~-~~d--~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~ 160 (404)
T COG4992 84 EPQAELAEKLVELSP-FAD--RVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG 160 (404)
T ss_pred hHHHHHHHHHHhhCc-ccc--EEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence 334466666777765 222 79999999999998765421 22 22 34664 4566642221110 000112221
Q ss_pred -----EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H----HHHHhhCCcEEEEecccc
Q 006746 242 -----VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W----MRIAQENDWHILIDACAL 311 (632)
Q Consensus 242 -----v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i----~~~a~~~g~~vlvDaaq~ 311 (632)
++.+|+. |+++++++|+++| ..|++--+.-..|++.|-+ . -++|+++|+++|+|-.|.
T Consensus 161 Pl~~g~~~vpfn------Di~al~~ai~~~t------aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQt 228 (404)
T COG4992 161 PLLPGFRHVPFN------DIEALEAAIDEDT------AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQT 228 (404)
T ss_pred CCCCCceecCCC------CHHHHHHHhccCe------EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEecccc
Confidence 3344442 7899999999864 8889999999999998755 3 356889999999999998
Q ss_pred C-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 312 G-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 312 ~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
+ |.. |--..-....||.++.. |-+|. --=+|+++.++...+.+.|-..|.+
T Consensus 229 G~GRTGk~fA~e~~gV~PDI~tla--K~LgG-G~PigA~la~~~~~~~~~~G~HgST----------------------- 282 (404)
T COG4992 229 GLGRTGKLFAYEHYGVEPDILTLA--KALGG-GFPIGAMLATEEIASAFTPGDHGST----------------------- 282 (404)
T ss_pred CCCccchHHHHHHhCCCCCEEEee--ccccC-CccceeeEEchhhhhcCCCCcccCC-----------------------
Confidence 7 321 11111223478988765 84442 2337999998654544443211100
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
| +| .+++. + ...++|+.+.+ +.+-+
T Consensus 283 ------f----GG-----NpLac--------------A-----------------------v~~a~l~~l~~---e~ll~ 307 (404)
T COG4992 283 ------F----GG-----NPLAC--------------A-----------------------VALAVLEVLLE---EGLLE 307 (404)
T ss_pred ------C----Cc-----CHHHH--------------H-----------------------HHHHHHHHHcc---hhHHH
Confidence 0 11 01110 0 01256666654 56678
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
+++.+..+|++.|.++.++. |+|+ . . .-+|=++.+.+.+. .....+.+.+.++|+-+-.
T Consensus 308 ~v~~~g~~~~~~L~~l~~~~----~~v~---~-v-RG~GLmiGiel~~~----~~a~~~~~~~~~~gvL~~~-------- 366 (404)
T COG4992 308 NVREKGEYLLQRLRELKRRY----PLVK---E-V-RGRGLMIGIELKEP----YRARDIVRALREEGVLVLP-------- 366 (404)
T ss_pred HHHHHHHHHHHHHHHHhhcC----Ccee---e-e-ecceeEEEEEecCc----ccHHHHHHHHHHCCeEEec--------
Confidence 89999999999999996643 3331 0 1 12456666766652 1345566666667765531
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
.+..+||+.+.+.-+.|||+..++.+++.|...
T Consensus 367 --------------------------------a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~ 399 (404)
T COG4992 367 --------------------------------AGPNVIRFLPPLVITEEEIDEALDALERALAAA 399 (404)
T ss_pred --------------------------------CCCCeEEecCCccCCHHHHHHHHHHHHHHHHHh
Confidence 133499999999999999999999999988753
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-07 Score=95.45 Aligned_cols=351 Identities=15% Similarity=0.152 Sum_probs=218.0
Q ss_pred CCCCCCCHHHHHHHhcCCCC-CCCCCCCCCCCCccccccccccccccccccccch--hHHHHHHHHHHHHHcCCCCCCcc
Q 006746 115 FGIGLFSYNQLHKQESSPSH-LRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISENDYG 191 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~-~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~--~~~~~~~R~~ia~~l~a~~~ey~ 191 (632)
++-.+.+.+|+|+.-..+.+ .++ +-|..++ ||+.+ .++.--++++.++.|+.+|+.+.
T Consensus 47 aSENFts~aVmeAlGS~ltNKYSE------------------GyPG~RY-YGGne~ID~iE~LCq~RALeaF~ldp~kWG 107 (477)
T KOG2467|consen 47 ASENFTSRAVMEALGSCLTNKYSE------------------GYPGARY-YGGNEYIDQIELLCQKRALEAFGLDPEKWG 107 (477)
T ss_pred ecccchHHHHHHHHhHHhhccccc------------------CCCcccc-cCcchHHHHHHHHHHHHHHHHhCCCHHHCc
Confidence 55667899999997665543 233 3344443 55543 34555578899999999998877
Q ss_pred EEEeC-CHHHHHHHHHhhCCCCCCCeEE---Eec-cccchhhHHHHHHHHhcCCEEEEE-------eccCCccccCHHHH
Q 006746 192 MVFTA-NRTSAFKLLAESYPFMSVKNLL---TVY-DYESEAVEAMIRTSEKRGARVMSA-------EFSWPRLRINSEKL 259 (632)
Q Consensus 192 vvft~-naT~al~lv~~sl~~~~gd~il---t~~-d~~s~~v~~~~~~a~~~G~~v~~v-------~~~~~~~~i~~~~l 259 (632)
|=.-+ +++-|.-.|-.++ .+|+++|. ++. .|-+ .-.+. ..+.+....+ .+++.+|-||-|.|
T Consensus 108 VNVQp~SGSPANfavYtal-l~Ph~RiMGLDLP~GGHLs--HGy~T---~~kkISa~SiyFeSmPYkv~~~TG~IDYD~L 181 (477)
T KOG2467|consen 108 VNVQPYSGSPANFAVYTAL-LKPHERIMGLDLPSGGHLS--HGYQT---PTKKISATSIYFESMPYKVDPSTGYIDYDKL 181 (477)
T ss_pred eeeccCCCCchhhHHHhhh-cCCCCeeeeccCCCCCccc--ccccc---CCceeeeeeeecccCceeeCCCCCceehHHH
Confidence 65444 6667766677777 78999975 222 3433 11111 1122222222 34556888999999
Q ss_pred HHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcc
Q 006746 260 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSF 333 (632)
Q Consensus 260 ~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~-----~m~~ldls~~~~Df~~~S~ 333 (632)
++....- +++|++.-.. ..-..+|++ +-++|.+.|+++++|.|+.-|. -..|++ .+|++.+.-
T Consensus 182 e~~A~~f-----rPk~iiaG~S--aY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFe----y~DiVTTTT 250 (477)
T KOG2467|consen 182 EKTATLF-----RPKLIIAGTS--AYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFE----YCDIVTTTT 250 (477)
T ss_pred HHHHHhc-----CCcEEEeccc--cchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccc----ccceeeccc
Confidence 8866543 2455543322 234567888 8899999999999998765432 112554 479999999
Q ss_pred cc-ccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchh
Q 006746 334 YQ-IFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI 411 (632)
Q Consensus 334 hK-~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~ 411 (632)
|| +-| |+| |.++.|+.+.. .++.. | .+ .+ ++|.. .+|.-.-+
T Consensus 251 HKsLRG--PRg-~mIFyRkGvk~-~~~k~-g~~i---------~y--------dlE~k-------------INfaVFP~- 294 (477)
T KOG2467|consen 251 HKSLRG--PRG-AMIFYRKGVKS-IKPKQ-GKEI---------LY--------DLEDK-------------INFAVFPG- 294 (477)
T ss_pred cccccC--Ccc-eeEEEeccCCc-CCCCC-CCcc---------ee--------chhhh-------------hhhhcccc-
Confidence 99 677 864 77788886632 22211 1 11 01 12211 11111111
Q ss_pred hhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCC
Q 006746 412 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEG 491 (632)
Q Consensus 412 ~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G 491 (632)
..|.|+-..|.+++ .||++...-....-++++..-+.+|-++|.++ |
T Consensus 295 ---lQGGPHNhtIaalA------------------------vALkQa~tpefk~Yq~qV~~Nakala~~l~~~------G 341 (477)
T KOG2467|consen 295 ---LQGGPHNHTIAALA------------------------VALKQAMTPEFKEYQKQVLKNAKALASALISR------G 341 (477)
T ss_pred ---ccCCCCcchHHHHH------------------------HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc------C
Confidence 24667777888887 89998887778888889999999999999988 6
Q ss_pred CCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccc
Q 006746 492 NALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS 571 (632)
Q Consensus 492 ~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~ 571 (632)
..+|. |-.+ ...|-..+.. .| ++...|++.++.-+|.+- .-. |
T Consensus 342 y~lvt--gGTD----nHlvLvDLr~-~G--~dGarvE~vle~~~I~~N------KNt-----------------v----- 384 (477)
T KOG2467|consen 342 YKLVT--GGTD----NHLVLVDLRP-KG--VDGARVEKVLELCHIALN------KNT-----------------V----- 384 (477)
T ss_pred ceEec--CCcc----ceEEEEeccc-cC--CchHHHHHHHHHhhhhhc------CCc-----------------C-----
Confidence 44431 2211 1233333332 33 888999999998777642 100 0
Q ss_pred cccccccCCCCCcEEEEccCCCCC----HHHHHHHHHHHHHhh
Q 006746 572 DNNRKDKANLGITVVTASLGYLAN----FEDVYRLWAFVAQFL 610 (632)
Q Consensus 572 ~~~~~~~~~~~~~~VRvSlg~~~t----~eDV~rlv~~l~~~l 610 (632)
+. |+....+|.||+..--+|| ++|..+..+||.+-+
T Consensus 385 pG---D~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 385 PG---DKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred CC---CccccCCCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence 00 0123456899999888886 788888888876643
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-07 Score=100.02 Aligned_cols=352 Identities=13% Similarity=0.068 Sum_probs=193.8
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.+... + ++ .+. . + ..+...+.-+++.
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~----~-------~~------~~~--~--~---~~~~~~~la~~l~ 105 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTL----A-------FF------PLW--S--Y---AHPPAIELAERLA 105 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhC----c-------Cc------ccc--c--c---CCHHHHHHHHHHH
Confidence 57889997553 555677887766544321 0 00 000 0 0 1233345666677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCC-CeEE-EeccccchhhHHHHHHH----HhcC-----CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSV-KNLL-TVYDYESEAVEAMIRTS----EKRG-----ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~g-d~il-t~~d~~s~~v~~~~~~a----~~~G-----~~v~ 243 (632)
+++..+- ..|.|+.++|+|...+.+--. + +++ .+|+ ....||......+. .. .+.+ ..+.
T Consensus 106 ~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s-~~~~~~~~~~~~~~~~g~~ 182 (460)
T PRK06541 106 ALAPGDL--NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALA-ITGLPAFKAPFEPLVPGGF 182 (460)
T ss_pred HhCCCCc--CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhc-CcCChhhccccCCCCCCcE
Confidence 7764322 279999999998887654211 1 112 3465 44567763322221 10 0111 1133
Q ss_pred EEeccCCccc-----cC--------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEE
Q 006746 244 SAEFSWPRLR-----IN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHIL 305 (632)
Q Consensus 244 ~v~~~~~~~~-----i~--------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vl 305 (632)
.+|.. .... -+ .+.+++.+.... ...+..|++.-+.+..|...| ++ +.++|+++|++++
T Consensus 183 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI 259 (460)
T PRK06541 183 RVPNT-NFYRAPELGDDPEAFGRWAADRIEEAIEFEG--PDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLV 259 (460)
T ss_pred EeCCC-ccccccccCCCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 33322 0000 01 256777775321 235678888888889999999 88 8999999999999
Q ss_pred Eecccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccC
Q 006746 306 IDACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 306 vDaaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
+|-++. +|.- +.....-...||+++ +=|.+|..-.-+|+++++++.++.+.+.. . . +.
T Consensus 260 ~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~G~~pigav~~~~~i~~~~~~~~-~-~---------~~------ 320 (460)
T PRK06541 260 SDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITSGYSPLGAMIASDRLFEPFLDGP-T-M---------FL------ 320 (460)
T ss_pred EechhhCCCcCchhhhhhhcCCCCCEEE--ecccccCCccceeEEEEcHHHHHHhhcCC-C-c---------cc------
Confidence 999873 3421 111111223689876 56866620002799999888765443210 0 0 00
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
..+|.. ..+++. ..+ .+.|+.+.+
T Consensus 321 ----------------~~~T~~-gnp~~~------------aaa-------------------------la~l~~l~~-- 344 (460)
T PRK06541 321 ----------------HGYTFG-GHPVSA------------AVA-------------------------LANLDIFER-- 344 (460)
T ss_pred ----------------cCCCCC-CCHHHH------------HHH-------------------------HHHHHHHHh--
Confidence 001100 001110 011 145565544
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC--CccCH--------HHHHHHHH
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR--EKIEP--------VLVQKLAD 532 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G--~~i~~--------~~V~kla~ 532 (632)
+.+.++++.+.++|.+.|.++.- .|.+.-. ...|.++.+.+.+... +.+.. ..+.+.+-
T Consensus 345 -~~~~~~~~~~g~~l~~~L~~l~~-----~~~v~~v-----rg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 413 (460)
T PRK06541 345 -EGLLDHVRDNEPAFRATLEKLLD-----LPIVGDV-----RGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALF 413 (460)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhhc-----CCCeEEE-----EecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHH
Confidence 34568889999999999988721 1322111 1346777777643211 11111 13444445
Q ss_pred hCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 533 RENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 533 ~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
++||.++.. ..+..+||+++.+..|.+||+++++.+.+.|..
T Consensus 414 ~~Gi~~~~~--------------------------------------~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 414 EAGLYCRAD--------------------------------------DRGDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred hCCeEEEec--------------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 678887531 112358999999999999999999999988753
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.8e-07 Score=96.25 Aligned_cols=201 Identities=12% Similarity=0.139 Sum_probs=120.6
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+ .|--.+.+++++.+.+... + .+ .+ . + ..+...+.-++++
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~----~-------~~------~~---~--~---~~~~~~~la~~l~ 76 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKL----V-------VA------GP---M--F---EHEEKEEMLEELS 76 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhc----C-------Cc------cC---C--c---CCHHHHHHHHHHH
Confidence 5788999754 4555567778766544321 0 00 00 0 1 1234456777788
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC-CeEE-EeccccchhhHHHHHH---HHhcCC-----EEEEEeccCC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-KNLL-TVYDYESEAVEAMIRT---SEKRGA-----RVMSAEFSWP 250 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g-d~il-t~~d~~s~~v~~~~~~---a~~~G~-----~v~~v~~~~~ 250 (632)
++++.+ .++|++++|+|+..+.+.....+| ++|+ ....||......+.-. ..+.+. .+..+|+
T Consensus 77 ~~~~~~----~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~--- 149 (364)
T PRK04013 77 KWVNYE----YVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF--- 149 (364)
T ss_pred hhcCCC----EEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC---
Confidence 887543 699999999999988776543345 5665 4557776332222100 001121 1222222
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC---CCCCCCCCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG---PKDMDSFGLS 322 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~---g~~m~~ldls 322 (632)
-+.+++++.|.++ ++.|++..+....|...| ++ +.++|+++|+++++|-+|.+ |. +.....-
T Consensus 150 ---~d~~~l~~~i~~~------~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~-~~a~~~~ 219 (364)
T PRK04013 150 ---NDVEAAKEAITKE------TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGK-FLAIEHY 219 (364)
T ss_pred ---CCHHHHHHHhcCC------cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCc-hhHHHhc
Confidence 1567888877643 477777777777777654 67 78899999999999998774 32 1222223
Q ss_pred CCCCcEEEEccccccCC-CCCceEEEEEeCCC
Q 006746 323 LVRPDFLICSFYQIFGE-NPSGFGCLFVKKST 353 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~-~P~G~G~L~Vr~~~ 353 (632)
...||++++ =|.+|. .| +|+++.+++.
T Consensus 220 gv~PDiv~~--gK~lggG~P--~~a~~~~~~~ 247 (364)
T PRK04013 220 KVEPDIVTM--GKGIGNGVP--VSLTLTNFDV 247 (364)
T ss_pred CCCCCEEEe--cccccCCce--eEEEEecccc
Confidence 457898887 474442 12 6777777654
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-07 Score=100.24 Aligned_cols=213 Identities=15% Similarity=0.123 Sum_probs=123.6
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..++ |--++.+++++.+.+... + + |+. ......+.+++|+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~--------------------~--~~~-~~~~~~~lae~l~ 98 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG----T--------------------S--YGA-PTEAEILLAKEII 98 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC----C--------------------c--CCC-CCHHHHHHHHHHH
Confidence 67889997543 456688888876544321 0 0 000 1233457899999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccC-------Cc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSW-------PR 251 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~-------~~ 251 (632)
+++... ..|+||.++|+|+..++... .+..+++|++ ...||. ...++.... ..|......+... +.
T Consensus 99 ~~~~~~---~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (423)
T TIGR00713 99 SRVPSV---EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHG-HHDALLVKA-GSGAATLGLPTSPGVPEDFAKL 173 (423)
T ss_pred HhCCcc---cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCC-Chhhhhccc-cCcccccCCCCCCCCCcccccc
Confidence 987643 26999999999999866532 1234456664 445665 222221100 0111110001000 00
Q ss_pred -c---ccCHHHHHHHHHhcCcCCCceeEEEE-eccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CC-CCCCC
Q 006746 252 -L---RINSEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PK-DMDSF 319 (632)
Q Consensus 252 -~---~i~~~~l~~~i~~~~~~~~~~~Lv~~-~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~-~m~~l 319 (632)
. .-+++++++.+... ..+++.|++ |..+| +|...| ++ +.++|+++|+++++|-++.. .. .+...
T Consensus 174 ~~~~~~~d~~~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~ 249 (423)
T TIGR00713 174 TLVLPYNDLEALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQ 249 (423)
T ss_pred eEEeCCCCHHHHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhH
Confidence 0 02688999888742 124566666 56666 899988 56 88999999999999998753 11 01111
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
......||++ ++=|.+|. -.-+|+++.+++.++.+.
T Consensus 250 ~~~~~~pDi~--t~sK~l~~-G~pig~v~~~~~i~~~~~ 285 (423)
T TIGR00713 250 EYFGVEPDLT--TLGKIIGG-GLPVGAFGGRREIMERLA 285 (423)
T ss_pred HHhCCCcchh--hhhhhhcC-CCceeeeeEHHHHHHhhC
Confidence 1122357854 67897772 112799998888776554
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-07 Score=102.47 Aligned_cols=352 Identities=14% Similarity=0.178 Sum_probs=194.5
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++-|||..+ .|--.+.+++++.+.+... + ++ ... ++. ..+...+.-+++.
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~----~-------~~------~~~-----~~~-~~~~~~~lae~L~ 143 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKL----P-------FY------HSF-----WNR-TTKPSLDLAKELL 143 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhc----c-------ce------ecc-----ccc-CcHHHHHHHHHHH
Confidence 5788999654 4545567777766544321 1 00 000 000 1233345556666
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC------CCCC-CeEE-EeccccchhhHHHHHHH------HhcCC---EEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP------FMSV-KNLL-TVYDYESEAVEAMIRTS------EKRGA---RVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~------~~~g-d~il-t~~d~~s~~v~~~~~~a------~~~G~---~v~ 243 (632)
+++.-. +-..+.|++++++|...+++... -.++ .+|+ ....||......+. +. +..+. .+.
T Consensus 144 ~~~~~~-~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~s-lsg~~~~~~~~~~~~~~~~ 221 (504)
T PLN02760 144 EMFTAR-KMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISAS-LSGLPALHQKFDLPAPFVL 221 (504)
T ss_pred hhcCCC-CCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhh-ccCChhhccCCCCCCCCcE
Confidence 665321 11268999999999997766431 1123 3455 45578864332221 10 01111 122
Q ss_pred EEecc--C----Ccc------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEE
Q 006746 244 SAEFS--W----PRL------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILI 306 (632)
Q Consensus 244 ~v~~~--~----~~~------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlv 306 (632)
.++.+ + +.. ....++++++|.... ...+..|++--+....|...| ++ +.++|+++|+++|+
T Consensus 222 ~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~ 299 (504)
T PLN02760 222 HTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEG--PETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIA 299 (504)
T ss_pred EeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 22221 0 000 011245666665311 235677788777778899998 88 99999999999999
Q ss_pred ecccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccC
Q 006746 307 DACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 307 Daaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~ 382 (632)
|-+|. +|.- |...+.....||++++ =|.+|..---+|++.++++.++.+.+.... |...
T Consensus 300 DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~--------------- 362 (504)
T PLN02760 300 DEVICAFGRLGTMFGCDKYNIKPDLVSL--AKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFA--------------- 362 (504)
T ss_pred cchhhCCcccchhhHHHhcCCCCcEEEe--cccccCCccccceEeecHHHHhhhhcccccccCcc---------------
Confidence 99884 3321 1111222236997665 586652100278899998887655432100 0000
Q ss_pred CCCCCccccchhhhhhhccccCCC-ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFS-GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL 461 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~-~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~ 461 (632)
..+| |. .+++. ..+ .+.|+.+.+.
T Consensus 363 ----------------h~~T--~~gnPl~~------------Aaa-------------------------la~Le~i~~~ 387 (504)
T PLN02760 363 ----------------HGFT--YSGHPVSC------------AVA-------------------------LEALKIYKER 387 (504)
T ss_pred ----------------cCCC--CCCCHHHH------------HHH-------------------------HHHHHHHHhC
Confidence 0111 11 01110 111 2567766653
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCC--CccC-----HHHHHHHHHh
Q 006746 462 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADR 533 (632)
Q Consensus 462 Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G--~~i~-----~~~V~kla~~ 533 (632)
.+.+|++.+.++|++.|.++.. .|.| .| .-+|.++.+.+.+..+ +... ...+.+.+.+
T Consensus 388 ---~l~~~~~~~g~~l~~~L~~l~~-----~~~v~~v------rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~ 453 (504)
T PLN02760 388 ---NIPEHVNKIAPRFQDGIKAFSG-----SPIIGEI------RGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKK 453 (504)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhc-----CCCeeeE------EeCceEEEEEEecCCcccccccchhHHHHHHHHHHHh
Confidence 5688999999999999988721 1322 12 1356777777755322 1111 2234444556
Q ss_pred CCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 534 ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 534 ~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+||.++.. + .++|+++.+..|.+||+++++.+.+.|+.
T Consensus 454 ~Gvl~~~~----------------------------------------g-~~lrl~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 454 RGMLVRVA----------------------------------------G-DNIMMSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred CCcEEEec----------------------------------------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 78776421 1 37899999999999999999999998865
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-07 Score=95.49 Aligned_cols=292 Identities=12% Similarity=0.125 Sum_probs=177.9
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCH---HHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANR---TSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~na---T~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
.+..+.+|++-+-+. .++|++.- -+-|-+++.-+| |=+|..+..+|+..+.++ +..|+.-....-
T Consensus 219 v~LE~eLA~LHqK~a---ALlFsSCfVANDstLftLak~lp---gcei~SD~gNHASMI~GI----rns~v~K~IFrH-- 286 (570)
T KOG1360|consen 219 VRLEAELADLHQKEA---ALLFSSCFVANDSTLFTLAKKLP---GCEIFSDEGNHASMIQGI----RNSRVPKHIFRH-- 286 (570)
T ss_pred hhHHHHHHHHhcCcc---eeeeeeeeeccchHHHHHHHHCC---CcEEeccccchHHHHHHh----hhcCCcceeecc--
Confidence 356677888776543 57777532 223556667664 556667666665333333 334544433332
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC------CCCCCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD------MDSFGLS 322 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~------m~~ldls 322 (632)
-|+++|+++|..-. +..+++|+|--+.+++|.+.|++ |+.+|+++|+++.||-++++|.. +..=|==
T Consensus 287 ----ND~~hL~~lL~~~~--~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGv 360 (570)
T KOG1360|consen 287 ----NDLDHLEQLLQSSP--KSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGV 360 (570)
T ss_pred ----CCHHHHHHHHHhCC--CCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCc
Confidence 37789999887632 34689999999999999999999 99999999999999998887531 0111111
Q ss_pred CCCCcEEEEccccccCCCCCceEE-EEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 323 LVRPDFLICSFYQIFGENPSGFGC-LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~G~-L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
..++|++....=|.||. +|. +....++++.++..-. |-+- ...
T Consensus 361 m~kvDiIsGTLgKafGc----VGGYIAat~~LvDmiRSyAa-GFIF-------------------------------TTS 404 (570)
T KOG1360|consen 361 MHKVDIISGTLGKAFGC----VGGYIAATRKLVDMIRSYAA-GFIF-------------------------------TTS 404 (570)
T ss_pred chhhhhcccchhhhccc----ccceehhhhhHHHHHHHhcC-ceEE-------------------------------ecC
Confidence 34678899999998883 333 3333444333322111 1110 000
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh-hCHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~-~Gl~~I~~r~~~L~~~L~~~ 480 (632)
.|+. ...-+| .+.+++.. .|.... ...+.-..++++.
T Consensus 405 LPP~----------------vl~GAl-------------------------eaVr~lk~~eg~~lR-~~hqrnv~~~kq~ 442 (570)
T KOG1360|consen 405 LPPM----------------VLAGAL-------------------------EAVRILKSEEGRVLR-RQHQRNVKYVKQL 442 (570)
T ss_pred CChH----------------HHHhHH-------------------------HHHHHHhhhhhHHHH-HHHHHHHHHHHHH
Confidence 0000 001112 45555554 343322 2334456788888
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
|.++ |.|.+ ..-+.||-..+-|.. .....-.-|+.++||.+..-. .+.
T Consensus 443 l~~~------GiPVi--------~~pSHIiPv~vgda~---l~~~~sd~Li~~h~iYvQaIN---yPT------------ 490 (570)
T KOG1360|consen 443 LMEL------GIPVI--------PNPSHIIPVRVGDAA---LAKQASDILISKHNIYVQAIN---YPT------------ 490 (570)
T ss_pred HHHc------CCccc--------CCCcceeeeeccCHH---HHHHHHHHHHHhcCeEEEecc---CCc------------
Confidence 8888 87865 123567777666632 233333457788999986321 100
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
-.++..-+|+.+-+..|++=++.|++.|...-
T Consensus 491 ------------------V~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw 522 (570)
T KOG1360|consen 491 ------------------VARGTERLRIAPTPHHTPQMMNILVNALLDVW 522 (570)
T ss_pred ------------------ccccceeeecCCCCCCCHHHHHHHHHHHHHHH
Confidence 13466789999999999999999999887643
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-07 Score=99.04 Aligned_cols=351 Identities=15% Similarity=0.144 Sum_probs=193.5
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.++..... +.+ + ...+...+.-++++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~--------~~~---------------~-~~~~~~~~la~~l~ 99 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYA--------PAF---------------Q-MGHPKAFELANRIA 99 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCc--------ccC---------------C-cCCHHHHHHHHHHH
Confidence 67889998654 677778888776544321000 000 0 01233346677777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CC-----CCC-CeEE-EeccccchhhHHHH-----HHHHhcC---CEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PF-----MSV-KNLL-TVYDYESEAVEAMI-----RTSEKRG---ARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~-----~~g-d~il-t~~d~~s~~v~~~~-----~~a~~~G---~~v~~ 244 (632)
+++... -..|.|+.++|+|+..+.+-- .+ +++ .+|+ ....||......+. ...+..+ ..+..
T Consensus 100 ~~~p~~--~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~ 177 (442)
T PRK13360 100 EIAPGG--LNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDH 177 (442)
T ss_pred HhCCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEE
Confidence 776322 127999999999888765431 11 122 3465 45567763222210 0001011 12333
Q ss_pred EeccCCccc--c----------CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEe
Q 006746 245 AEFSWPRLR--I----------NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILID 307 (632)
Q Consensus 245 v~~~~~~~~--i----------~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvD 307 (632)
+|......+ + ..++++++|.... ...+..|++.-+....|.+.| ++ +.++|+++|+++++|
T Consensus 178 ~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~D 255 (442)
T PRK13360 178 LPHTLDLARNAFSKGQPEHGAELADELERLVTLHD--ASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFD 255 (442)
T ss_pred eCCCchhhccccCCChHHHHHHHHHHHHHHHHhcC--CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 443210000 0 1456777775321 235678888888888999999 88 999999999999999
Q ss_pred cccc-CCCC--CCCCCCCCCCCcEEEEccccccCC--CCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccC
Q 006746 308 ACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGE--NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 308 aaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~--~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
-+|. +|.- +.........||++++ =|.+|. -| +|++.++++.++.+......+ ..++ +
T Consensus 256 Ev~tG~GrtG~~~a~~~~gv~PDivt~--gK~l~gG~~P--~gav~~~~~i~~~~~~~~~~~--------~~~~--~--- 318 (442)
T PRK13360 256 EVITGFGRLGAPFAAQYFGVTPDLLTC--AKGLTNGAIP--MGAVFVSSEIHDAFMQGPEAG--------IEFF--H--- 318 (442)
T ss_pred chhhCCCCCccchhhhhcCCCCceeee--eeccccCccc--eEEEEEcHHHHHHhhcCCccc--------cccc--c---
Confidence 9884 3321 1111222346898754 685552 13 788888887765443210000 0000 0
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
.+| |.+ |.....+. .+.|+.+.+.
T Consensus 319 -----------------~~T--~~g------------~pl~~aaa------------------------~a~L~~l~~~- 342 (442)
T PRK13360 319 -----------------GYT--YSG------------HPLACAAA------------------------LATLDLYERE- 342 (442)
T ss_pred -----------------CCC--CCC------------CHHHHHHH------------------------HHHHHHHHhC-
Confidence 011 110 11111222 2677777654
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc-cCHHHHHHHHHhCCcEEccC
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEPVLVQKLADRENISLSYG 541 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~-i~~~~V~kla~~~gI~lr~G 541 (632)
.+.+|.+.+.++|.+.|.++.. .|.| ++ . .-+|..+.+.+.+.++.. -....+.+.+.++||.++.+
T Consensus 343 --~l~~~~~~~g~~l~~~l~~l~~-----~~~v---~~-v-rG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~ 410 (442)
T PRK13360 343 --GLLTRAARLAPYWEDALHSLRD-----APHV---ID-I-RNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT 410 (442)
T ss_pred --CHHHHHHHHHHHHHHHHHHhhc-----CCCe---ee-e-eccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec
Confidence 3567888889999999987731 1322 11 0 123444555554322111 01223444444578876421
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..++|+++.+..|.+||+++++.+.+.|.
T Consensus 411 -----------------------------------------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~ 439 (442)
T PRK13360 411 -----------------------------------------GDILALSPPLIIEEAQIDELFDILAQALK 439 (442)
T ss_pred -----------------------------------------CCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 14799999999999999999999998874
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9e-07 Score=93.29 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.++++.+..-.++--+-...+..|+|+++.--++.++++.| -++||.|++.. -|+. .....+..|-++...|+
T Consensus 63 ~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~-T~~gd~Vvi~tPvY~P-----F~~~i~~n~R~~i~~pL 136 (388)
T COG1168 63 DELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRAL-TKPGDGVVIQTPVYPP-----FYNAIKLNGRKVIENPL 136 (388)
T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHh-CcCCCeeEecCCCchH-----HHHHHhhcCcEEEeccc
Confidence 45777888888887666544458999999999999999999 58999976432 2332 23445678899999988
Q ss_pred cCCccc--cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 248 SWPRLR--INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 248 ~~~~~~--i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
..++++ +|.++|++.+.+. +++|+.++...|+||.... +. |..+|+++|+.|+.|--++- |+.-.
T Consensus 137 ~~~~~~y~iD~~~LE~~~~~~-----~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~ 211 (388)
T COG1168 137 VEDDGRYEIDFDALEKAFVDE-----RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHI 211 (388)
T ss_pred cccCCcEEecHHHHHHHHhcC-----CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCcc
Confidence 655544 5999999999875 3699999999999999975 44 67889999999999985432 31111
Q ss_pred CC-CCCCC--CCcEEEEccccccCCCCCceEEEEEeCCC
Q 006746 318 SF-GLSLV--RPDFLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 318 ~l-dls~~--~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
++ .++.. +--+.+.|.-|.|+.+....+.+++.++.
T Consensus 212 ~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~ 250 (388)
T COG1168 212 PFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRE 250 (388)
T ss_pred chhhcChhhhcceEEEeeccccccchhhhheeEEecCHH
Confidence 21 23333 23466677789888532233445555443
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-06 Score=97.85 Aligned_cols=220 Identities=11% Similarity=0.076 Sum_probs=123.7
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.+..... .++ . + ..+...+.-+++.
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~------------------~~~--~--~---~~~~~~~lae~L~ 105 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCT------------------VAP--A--H---ANDARSEAARLIA 105 (451)
T ss_pred CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCC------------------cCC--c--c---CCHHHHHHHHHHH
Confidence 67889998654 55567788876654432100 000 0 0 1233345666677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHHHH---hcC-----CEEEEEeccCC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRTSE---KRG-----ARVMSAEFSWP 250 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~a~---~~G-----~~v~~v~~~~~ 250 (632)
+++...- ..|.|+.++|+|...+++--..-.|+ +|++ ...||......+. ... .+. ..+..++...+
T Consensus 106 ~~~p~~~--~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als-~~~~~~~~~~~~~~~~~~~~~~p~~ 182 (451)
T PRK06062 106 ERAPGDL--SKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAIN-LTGDPRRWPNDTGRAGVVHFFGPFL 182 (451)
T ss_pred HhCCCCC--CEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHh-hcCCcccccCCCCCCCCEEeCCCCc
Confidence 7654221 27999999999988776532211343 4664 4567763332221 110 000 01222322111
Q ss_pred c-cc----cC-------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-
Q 006746 251 R-LR----IN-------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG- 312 (632)
Q Consensus 251 ~-~~----i~-------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~- 312 (632)
. .. -+ .++++++|... ...++..|++--+....|.+.| ++ +.++|+++|+++++|-+|.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGf 260 (451)
T PRK06062 183 YRSEFHATTEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGF 260 (451)
T ss_pred cccccCCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCC
Confidence 0 00 01 56677777532 1235677777777778899999 88 88999999999999998774
Q ss_pred CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 313 PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 313 g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
|.. |-..+.-...||++++ =|.+|..-.=+|+++.++++++.+.
T Consensus 261 GRtG~~~a~~~~gv~PDi~t~--gK~lggG~~Pigav~~~~~i~~~~~ 306 (451)
T PRK06062 261 GRTGKWFAIEHFGVVPDLITF--AKGVNSGYVPLGGVAISEAIAATFA 306 (451)
T ss_pred CcCcHHHHHHhcCCCCCeeee--chhhhcCCcCcEEEEEcHHHHHHhc
Confidence 321 1011112347897765 5866520001788999988765553
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-07 Score=99.47 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
..+.++.+.+|+.||++. ....++|+|.|++.+..+. ..+||.||++-+.|-+....|. ..|+..+++....
T Consensus 70 G~i~eAqe~aA~~fgAd~---tyFvvNGTS~ank~vi~a~-~~~GD~VLvdRN~HKSi~~gli----laGa~Pvyl~p~~ 141 (557)
T COG1982 70 GPIKEAQELAARVFGADH---TYFVVNGTSTANKAVINAV-LTPGDKVLVDRNCHKSIHHGLI----LAGATPVYLEPSR 141 (557)
T ss_pred ccHHHHHHHHHHHhCCCc---eEEEECCccHHHHHHHHhh-cCCCCEEEecCCccHHHHHHHH----HcCCceEEecCCC
Confidence 456799999999999974 5677899999999999998 7999999988765543455543 3589888886542
Q ss_pred -C----ccccCHHHHHHHHHhcCcCCCce-eEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC---CCCCCC
Q 006746 250 -P----RLRINSEKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP---KDMDSF 319 (632)
Q Consensus 250 -~----~~~i~~~~l~~~i~~~~~~~~~~-~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g---~~m~~l 319 (632)
+ -+.|+.+.+.+.+.++. .. ++++++. .+.-|+.++++ |++.++..+++|++|-++-+. ..|.+.
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~----~~~k~~vitn-pTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~ 216 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHP----DAEKLAVITN-PTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPE 216 (557)
T ss_pred CccccccCCCCHHHHHHHHHhCh----hhheeEEEec-CccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcc
Confidence 2 14588999999887643 12 5555544 56799999999 999999999999999876553 222222
Q ss_pred CCCC-CCCcEEEEccccccCCCCCceEEEEEeC
Q 006746 320 GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 320 dls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
... .+.||++-|.||.+|. -+=...|-|++
T Consensus 217 -~~~~~~~~~~tqS~HK~l~a-lSQaS~iHv~~ 247 (557)
T COG1982 217 -SALNGGADFVTQSTHKLLAA-LSQASMIHVKD 247 (557)
T ss_pred -hhhhcCceEEEechhhhhhh-hhhhHHHhhCC
Confidence 222 6889999999998884 33344455554
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-07 Score=107.99 Aligned_cols=362 Identities=12% Similarity=0.089 Sum_probs=202.0
Q ss_pred CCCchhHHHHHHhhccCcCCCCceEeecCCCCCCCH---HHH-HHHhcCCCCCCCCCCCCCCCCcccccccccccccccc
Q 006746 87 YFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSY---NQL-HKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL 162 (632)
Q Consensus 87 y~~~~~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~---~~~-~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~ 162 (632)
.++.+.++++|+ +..+|++|-.+.|.|.+.. +++ +.+... |.+|- +|..=-| ..
T Consensus 61 ~sE~e~~~~~~~-----~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~~--------~~~yT-------aYTPYQp--Ei 118 (954)
T PRK12566 61 LDEQAALARLRG-----YAEQNQVWTSLIGMGYHGTVTPTVILRNVLEN--------PGWYT-------AYTPYQP--EI 118 (954)
T ss_pred CCHHHHHHHHHH-----HHhcCCCccccccccccCCcCcHHHHHHHHhC--------chhhh-------cCCCCCc--hh
Confidence 333444555543 4447888999999998876 666 444331 21110 1100001 11
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCC--CCeEEEeccccchhhHHHHHHHHhcCC
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMS--VKNLLTVYDYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~--gd~ilt~~d~~s~~v~~~~~~a~~~G~ 240 (632)
.+|. -+.+=+....|+++.|.+-.+ --+--.+|.+-+.+.-+....+ ..+++++..-|.+...-++..++..|+
T Consensus 119 sQG~--Lqal~e~Qtmi~~LtGm~vaN--ASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~ 194 (954)
T PRK12566 119 AQGR--LEALLNFQQMTIDLTGLDLAN--ASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGF 194 (954)
T ss_pred hhHH--HHHHHHHHHHHHHHhCchhhh--hhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCc
Confidence 2232 244557888999999876321 1111244443332222222222 345766554444466667777888888
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccC-CCCccccchH-HHHHHhhCCcEEEEec--cccCCCCC
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHS-RMTGARYPYL-WMRIAQENDWHILIDA--CALGPKDM 316 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~s-n~TG~~~pl~-i~~~a~~~g~~vlvDa--aq~~g~~m 316 (632)
+++. +++++.+++ .++++-.+. |..|.+.+++ |++++|++|.++++-+ -++...
T Consensus 195 ~i~~------------~~~~~~~~~--------~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~~~~d~laL~ll-- 252 (954)
T PRK12566 195 ELVV------------DAVDNLAAH--------AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALACVAADLLSLLVL-- 252 (954)
T ss_pred EEEE------------cchhhcCCC--------CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEEEEeCHHHHhCC--
Confidence 8875 233333332 244444433 8999999999 9999999999866422 233222
Q ss_pred CCCCCCCCCCcEEEEcccc-----ccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 317 DSFGLSLVRPDFLICSFYQ-----IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK-----~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
.+- -++++|+++.+.+- -||. | +.|++-+|++....+.-...|=+++. ..+.-| .--+.+.+
T Consensus 253 ~~P--ge~GADI~vG~~Q~fGvp~~~GG-P-~ag~~a~~~~~~R~~PGRivG~s~D~--~G~~a~------~l~LqtRE- 319 (954)
T PRK12566 253 TPP--GELGADVVLGSTQRFGVPMGYGG-P-HAAYFACRDDYKRAMPGRIIGVSRDA--RGNTAL------RMALQTRE- 319 (954)
T ss_pred CCh--hhcCCcEEeeCCCcCCCCCCCCC-C-CeeeeeehHHHHhhCCCCccceeecC--CCCeee------ehhhhHHH-
Confidence 111 45789999998874 3553 3 79999999987666655555422211 000000 00011110
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH--HHHhhCHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD--QVDSLGLTMISRR 469 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd--~~~~~Gl~~I~~r 469 (632)
++ -++|. .|.|+---++|- ++ .+++= ++=..||..|.+|
T Consensus 320 QH--IRReK----------------AtSNICT~qaL~--------------------A~-~a~~Y~~~~Gp~Gl~~ia~~ 360 (954)
T PRK12566 320 QH--IRREK----------------ANSNICTAQVLL--------------------AN-IAGFYAVYHGPEGLKRIAQR 360 (954)
T ss_pred HH--hhhcc----------------ccchhhHHHHHH--------------------HH-HHHHHHHHhChHHHHHHHHH
Confidence 01 01122 344444334332 00 02221 1223578999999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHH
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~ 549 (632)
+..++.+|.++|.+. |.. +... ..=-.+.+++ + .....+.+.+.+.||-+|.-
T Consensus 361 ~~~~a~~l~~~l~~~------g~~---~~~~----~fF~~~~v~~-~-----~~~~~~~~~a~~~~~n~r~~-------- 413 (954)
T PRK12566 361 VHRLTAILAAGLEAK------GIK---RLNR----HFFDTLTLEV-G-----GAQAAIIESAEAARINLRIL-------- 413 (954)
T ss_pred HHHHHHHHHHHHHhc------CCc---cccC----CccceEEEEc-c-----CCHHHHHHHHHHCCCeeEEe--------
Confidence 999999999999986 432 2111 1112333433 1 13556667777788888721
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
..+.|.||+.--+|.+||..|+..+.
T Consensus 414 --------------------------------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 414 --------------------------------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred --------------------------------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 12479999999999999999999874
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-06 Score=94.66 Aligned_cols=347 Identities=12% Similarity=0.107 Sum_probs=190.2
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.+...... . +.....+...+.-+++.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~------~------------------~~~~~~~~~~~la~~l~ 93 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHT------A------------------YQIVPYASYVTLAERIN 93 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccc------c------------------ccccCChHHHHHHHHHH
Confidence 67889998554 566677777766544321000 0 00001122234456666
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHHHH-----hcCC-----EEEEEecc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRTSE-----KRGA-----RVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~a~-----~~G~-----~v~~v~~~ 248 (632)
+++.... ...+.|+.++|+|...+++--....|+ +|+. ...||....-.+. ... +.+. .+..++.
T Consensus 94 ~~~p~~~-~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s-~t~~~~~~~~~~~~~~~~~~~~~~- 170 (421)
T PRK06777 94 ALAPIDG-PAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMA-LTGKVAPYKVGFGPFPGSIFHALY- 170 (421)
T ss_pred HhCCCCC-CceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHh-hcCCCcccccCCCCCCCCcEEcCC-
Confidence 7764321 127999999999988765532111344 4654 4567764333321 110 0110 1122222
Q ss_pred CCcc------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccc-cc---hH-HHHHHhhCCcEEEEeccccC-CCC-
Q 006746 249 WPRL------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YP---YL-WMRIAQENDWHILIDACALG-PKD- 315 (632)
Q Consensus 249 ~~~~------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~-~p---l~-i~~~a~~~g~~vlvDaaq~~-g~~- 315 (632)
|+. ..+.+.+++.|.... ....+..|++.-+....|.. .| ++ +.++|+++|+++++|-++.. +..
T Consensus 171 -p~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g 248 (421)
T PRK06777 171 -PNELHGVSVEEALSSVERLFKADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG 248 (421)
T ss_pred -CccccCcCHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC
Confidence 111 012556777775311 12346777777777788865 55 66 78899999999999998663 221
Q ss_pred -CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchh
Q 006746 316 -MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 394 (632)
Q Consensus 316 -m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 394 (632)
+.....-...||++ ++=|.+|. -.-+|++..++++++.+.+...+++ |
T Consensus 249 ~~~~~~~~~~~pDiv--~~sK~l~~-G~pigav~~~~~i~~~~~~~~~~~T----------~------------------ 297 (421)
T PRK06777 249 KLFAMEYYDVKPDLI--TMAKSLGG-GMPISAVVGRAEVMDAPAPGGLGGT----------Y------------------ 297 (421)
T ss_pred chhhhhhcCCCCCEE--eeehhhcC-CCceEEEEEcHHHHhccCCCCCCCC----------C------------------
Confidence 11112123368966 56796651 1227888888877655543211100 0
Q ss_pred hhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHH
Q 006746 395 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 474 (632)
Q Consensus 395 ~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~ 474 (632)
.+ |.....+. .++|+.+++ +.+.++.+.+.
T Consensus 298 -----~~------------------~p~~~aaa------------------------~a~L~~~~~---~~l~~~~~~~g 327 (421)
T PRK06777 298 -----AG------------------NPLAVAAA------------------------LAVLDVIAE---EKLCQRALILG 327 (421)
T ss_pred -----Cc------------------CHHHHHHH------------------------HHHHHHHHh---ccHHHHHHHHH
Confidence 00 00001111 156666654 56778888999
Q ss_pred HHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccC-CCCccCHH---HHHHHHHhCCcEEccCccCChHHHh
Q 006746 475 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDW-KREKIEPV---LVQKLADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 475 ~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~-~G~~i~~~---~V~kla~~~gI~lr~G~~c~~~~~~ 550 (632)
++|.+.|.++.... |.+.-. ..+|.++.+.+.+. .+.. +.+ .+++.+.++||.+..+.
T Consensus 328 ~~l~~~L~~l~~~~----~~i~~v-----rg~G~~~~i~~~~~~~~~~-~~~~~~~l~~~~~~~Gv~i~~~~-------- 389 (421)
T PRK06777 328 AHLVEVLEKAKASC----PAIVDI-----RARGSMVAVEFNDPQTGKP-SPEFTRQYQRQALEEGLLLLSCG-------- 389 (421)
T ss_pred HHHHHHHHHHHHhC----CCeEEe-----cCceEEEEEEEecCccCCc-cHHHHHHHHHHHHhCCeEEeecC--------
Confidence 99999998873211 323211 23567776655432 1111 122 23333445788875320
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
. ...+||+++.+.-|.++|+..++.|.++|.
T Consensus 390 -----------------------------~-~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 390 -----------------------------V-HGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred -----------------------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 124899999999999999999999998874
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-09 Score=108.74 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=121.4
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
||. ....++++++|+++||.+ ..+|++++|.|..+++..+. ++++.|+....-|-..... ...+.-.|+++.
T Consensus 25 Yg~--D~~~~~l~~~i~~l~g~e----~a~f~~sGT~An~~al~~~~-~~~~~vi~~~~aHi~~~E~-ga~~~~~G~~~~ 96 (290)
T PF01212_consen 25 YGE--DPTTARLEERIAELFGKE----AALFVPSGTMANQLALRAHL-RPGESVICADTAHIHFDET-GAIEELSGAKLI 96 (290)
T ss_dssp TTS--SHHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHHH-HTTEEEEEETTEHHHHSST-THHHHHTTCEEE
T ss_pred cCC--ChhHHHHHHHHHHHcCCC----EEEEeCCCChHHHHHHHHHH-hcCCceeccccceeeeecc-chhhHhcCcEEE
Confidence 554 367789999999999986 45799999999999999985 7888877553322111111 112244799998
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccchH----HHHHHhhCCcEEEEeccccC------
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL----WMRIAQENDWHILIDACALG------ 312 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~pl~----i~~~a~~~g~~vlvDaaq~~------ 312 (632)
.++.+ ..+.+++++|++.+.....-..++++|+++..++.. |+.++++ |.+.||++|+.+++|+|=++
T Consensus 97 ~l~~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~ 175 (290)
T PF01212_consen 97 PLPSD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAAL 175 (290)
T ss_dssp EEBEC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHH
T ss_pred ECCCc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcc
Confidence 88774 338999999999998743222468999999887764 8888776 45679999999999997332
Q ss_pred CCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCc
Q 006746 313 PKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 313 g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~ 354 (632)
+. ..-++. -.+|.+.+|++|-+|. | +=++|..+++.+
T Consensus 176 ~~--~~~e~~-~~~D~v~~~~tK~~g~-~-~Gavl~~~~~~i 212 (290)
T PF01212_consen 176 GV--SLAEIA-AGADSVSFGGTKNGGA-P-GGAVLAGNKEFI 212 (290)
T ss_dssp HH--HHHHHH-TTSSEEEEETTSTT-S-S-SEEEEEESHHHH
T ss_pred cc--cHHHHh-hhCCEEEEEEEccccc-c-cceEEEechHHH
Confidence 22 111111 4689999999998885 4 567777777744
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.4e-07 Score=99.00 Aligned_cols=169 Identities=12% Similarity=0.064 Sum_probs=115.1
Q ss_pred HHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ | ++++ +|++|+|+++|+.+++..+-..+||+|++. -.|+. + ...++..|++++.++
T Consensus 111 ~LR~aia~~~~~~~g~~~~~~--~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~--y---~~~~~~~g~~~v~v~ 183 (407)
T PLN02368 111 GVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPL--Y---SATISLLGGTLVPYY 183 (407)
T ss_pred HHHHHHHHHHHHhcCCCCChh--hEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCcc--H---HHHHHHcCCEEEEEe
Confidence 5677777776 6 4444 799999999999999998833689997754 35543 2 334567899999998
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEeccc--cC--CC-CC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACA--LG--PK-DM 316 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq--~~--g~-~m 316 (632)
++.. +..++.++|++.+++...+..+++++.++.-+|+||..++.+ + +++|+++|++++.|-+- +. +. ..
T Consensus 184 ~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~ 263 (407)
T PLN02368 184 LEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPF 263 (407)
T ss_pred cccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 8632 346899999999874211112468888888899999999876 4 56789999999999852 11 21 00
Q ss_pred CCC-----CCC----CCCCcEEEEcccccc-CCCCCceEEEEE
Q 006746 317 DSF-----GLS----LVRPDFLICSFYQIF-GENPSGFGCLFV 349 (632)
Q Consensus 317 ~~l-----dls----~~~~Df~~~S~hK~~-G~~P~G~G~L~V 349 (632)
.++ ++. ....=+++.|+-|.| |.+---+|++++
T Consensus 264 ~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~ 306 (407)
T PLN02368 264 ISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEM 306 (407)
T ss_pred ccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEE
Confidence 110 110 011236778999976 753334587774
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-07 Score=102.44 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=100.8
Q ss_pred CccEEEeCCHHHHHHHHHhhC----CCCCCCeEEEec-cccchhhHHHHHHHHhc--CCEEEEEeccC-CccccCHHHHH
Q 006746 189 DYGMVFTANRTSAFKLLAESY----PFMSVKNLLTVY-DYESEAVEAMIRTSEKR--GARVMSAEFSW-PRLRINSEKLR 260 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl----~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~--G~~v~~v~~~~-~~~~i~~~~l~ 260 (632)
+.+|+.|+|+++||..+..++ -..+||+|++.. .|+. + ...++.. |++++.++.+. .+..++.++|+
T Consensus 161 ~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~--Y---~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~ 235 (527)
T PRK09275 161 EFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTP--Y---LEIPELPRYDLEVVHINADEENEWQYPDSELE 235 (527)
T ss_pred cCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHH--H---HHHHHHcCCCeEEEEeecCcccCCCCCHHHHH
Confidence 347999999999999998873 268999987654 3332 2 2233334 45555555442 23568889998
Q ss_pred HHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhh--CCcEEEEeccc--cCCCCCCCCCCCCC-CCcEEEE
Q 006746 261 KMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQE--NDWHILIDACA--LGPKDMDSFGLSLV-RPDFLIC 331 (632)
Q Consensus 261 ~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~--~g~~vlvDaaq--~~g~~m~~ldls~~-~~Df~~~ 331 (632)
++++++ ++++.+..-+|+||..++ ++ |+++|++ +++++|.|-+- +.+.- .++ ++.. .--+++.
T Consensus 236 ~~~~~~------tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~-~s~-~~~~~~~~I~v~ 307 (527)
T PRK09275 236 KLRDPS------IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDF-RSL-FAVLPYNTILVY 307 (527)
T ss_pred hhcCCC------CCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccc-cCH-HHhCCCCEEEEe
Confidence 877654 488888889999999999 44 5677854 59999999863 22210 111 1111 1247888
Q ss_pred ccccccCCCCCceEEEEEeCC
Q 006746 332 SFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 332 S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
|+-|.||++---+|+++..++
T Consensus 308 SfSK~f~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 308 SFSKYFGATGWRLGVIALHED 328 (527)
T ss_pred ehhhhccCcHhHHhhhhcCch
Confidence 999999963233598888775
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-06 Score=96.18 Aligned_cols=347 Identities=11% Similarity=0.105 Sum_probs=191.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..+. |--.+.+++++.+.++... . . .. +....+...+.-++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~--------~---~-------~~------~~~~~~~~~~la~~L~ 96 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS--------H---V-------MF------GGITHPPAIELCRKLV 96 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcC--------C---c-------cc------cccCCHHHHHHHHHHH
Confidence 67889998653 4556777777665443210 0 0 00 0001233345666677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C----CCC-CeEE-EeccccchhhHHHHHH----HHh--cC---CEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F----MSV-KNLL-TVYDYESEAVEAMIRT----SEK--RG---ARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~----~~g-d~il-t~~d~~s~~v~~~~~~----a~~--~G---~~v~~ 244 (632)
+++..+ -..+.|+.++|+|...+.+--. + ..| .+|+ ....||......+.-. ..+ .+ -.+..
T Consensus 97 ~~~p~~--~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~ 174 (428)
T PRK07986 97 AMTPQP--LECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLF 174 (428)
T ss_pred hhCCCC--cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEE
Confidence 766432 1379999999998887655321 1 123 3465 4456776333222100 000 00 11223
Q ss_pred EeccCCcc-----ccCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-
Q 006746 245 AEFSWPRL-----RINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP----YL-WMRIAQENDWHILIDACALG- 312 (632)
Q Consensus 245 v~~~~~~~-----~i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~- 312 (632)
++...... .-+.+++++.|... ...+..|++-- ++...|.+.| ++ +.++|+++|+++++|-+|.+
T Consensus 175 ~~~p~~~~~~~~~~~d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~ 251 (428)
T PRK07986 175 APAPQSRFDGEWDERDIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGF 251 (428)
T ss_pred ECCCCcccchhhHHHHHHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 33210000 12456777777532 23456677755 3666776543 66 78899999999999998753
Q ss_pred CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccc
Q 006746 313 PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 313 g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
|.. +-..+.....||+++ +=|.+|..---+|++.+++++++.+.+...+ . +.
T Consensus 252 GrtG~~fa~~~~gv~PDi~t--~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~-~---------~~-------------- 305 (428)
T PRK07986 252 GRTGKLFACEHAGIAPDILC--LGKALTGGTMTLSATLTTREVAETISNGEAG-C---------FM-------------- 305 (428)
T ss_pred ccCCCeeeecccCCCCCEEE--echhhhCCcccCcchhchHHHHHHhhcCCCC-c---------cc--------------
Confidence 221 111122334689886 5685442101257777777776555331000 0 00
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 470 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~ 470 (632)
..+| |.+ |.....+. .+.|+.+.+. .+.+|+
T Consensus 306 --------~~~T--~~g------------~p~~~aaa------------------------~a~L~~i~~~---~~~~~~ 336 (428)
T PRK07986 306 --------HGPT--FMG------------NPLACAVA------------------------NASLSLLESG---DWQQQV 336 (428)
T ss_pred --------cCCC--CCc------------CHHHHHHH------------------------HHHHHHHHhC---CHHHHH
Confidence 0111 110 10111111 2567777654 457888
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHh
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~ 550 (632)
+.+.++|.+.|.++.- .|.| +. . .-+|.++++.+.+. .....+.+.+.++||.++..
T Consensus 337 ~~~g~~l~~~l~~l~~-----~~~i---~~-v-Rg~Gl~~~ve~~~~----~~~~~~~~~l~~~Gl~~~~~--------- 393 (428)
T PRK07986 337 AAIEAQLREELAPLRD-----APMV---AD-V-RVLGAIGVVETTRP----VNMAALQRFFVEQGVWIRPF--------- 393 (428)
T ss_pred HHHHHHHHHHHHHHhc-----CCCE---Ee-E-eccceEEEEEeCCc----ccHHHHHHHHHHCCcEEEec---------
Confidence 8999999999988731 1333 11 1 23577888877653 13445666666778877521
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ .+||+++.+..|.|||+++++.|.+.|+.
T Consensus 394 -------------------------------g-~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 394 -------------------------------G-KLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred -------------------------------C-CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 38999999999999999999999987755
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.1e-07 Score=98.24 Aligned_cols=211 Identities=12% Similarity=0.137 Sum_probs=123.3
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |.-++.+++++.+.+... + . ++. ......+..++++
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~----~----------------~------~~~-~~~~~~~la~~L~ 100 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKG----L----------------S------FGA-PTELEVELAELVI 100 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhC----C----------------c------CCC-CCHHHHHHHHHHH
Confidence 56789998653 456677787766544321 0 0 000 1133346777777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEE-EeccccchhhHHHHHHHH----h------cCCEE----EE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PFMSVKNLL-TVYDYESEAVEAMIRTSE----K------RGARV----MS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~gd~il-t~~d~~s~~v~~~~~~a~----~------~G~~v----~~ 244 (632)
+++.- .+ .|.||.++++|+..+.... .+..+++|+ ....||.. ..+...... . .+... ..
T Consensus 101 ~~~~~-~~--~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (426)
T PRK00062 101 ELVPS-IE--MVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGH-ADSLLVKAGSGAATLGLPDSPGVPEDFAKHT 176 (426)
T ss_pred HhCCC-CC--EEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCc-hhhhhhccCccccccCCCCCCCCCcccccce
Confidence 77631 22 6999999999999887753 223345565 45567752 222211100 0 01100 01
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccCC-C-CCC
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALGP-K-DMD 317 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~g-~-~m~ 317 (632)
..+ +. .+.+++++.+... ..++..|++..+...+|...| ++ +.++|+++|+++++|-++.+- . .+.
T Consensus 177 ~~~--~~--~d~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~ 249 (426)
T PRK00062 177 LTA--PY--NDLEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGG 249 (426)
T ss_pred EEc--CC--CCHHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCcc
Confidence 111 11 2678888888642 235678888877777999999 88 899999999999999987631 1 011
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
..+.-...||++ ++-|.+|. -.-+|++..++++++.+.
T Consensus 250 ~~~~~~~~pDi~--~~gK~l~~-G~p~ga~~~~~~i~~~~~ 287 (426)
T PRK00062 250 AQGYYGVTPDLT--TLGKIIGG-GLPVGAFGGRREIMEQLA 287 (426)
T ss_pred HHHHhCCCcchH--hhhhHhhC-CCcceeeeEHHHHHHhhc
Confidence 111112357864 55696662 112688888877766553
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-06 Score=93.04 Aligned_cols=351 Identities=13% Similarity=0.088 Sum_probs=192.4
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..++ |--.+.+++++.+.+..... .. . +....+...+.-+++.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~------~~------------~------~~~~~~~~~~la~~l~ 93 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTH------TA------------Y------QIVPYESYVTLAEKIN 93 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccC------cc------------c------CccCCHHHHHHHHHHH
Confidence 67889998654 56667777776654432100 00 0 0001122234455566
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEE-EeccccchhhHHHHHH----HHhcCC-----EEEEEeccC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLL-TVYDYESEAVEAMIRT----SEKRGA-----RVMSAEFSW 249 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~il-t~~d~~s~~v~~~~~~----a~~~G~-----~v~~v~~~~ 249 (632)
+++... ....+.|+.++|+|+..+.+--..-.|+ +|+ ....||......|.-. ..+.+. .+..+|+..
T Consensus 94 ~~~p~~-~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~ 172 (421)
T PRK09792 94 ALAPVS-GQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPS 172 (421)
T ss_pred HhCCCC-CCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCc
Confidence 665422 1237999999999888765432211344 465 4456776433332110 011111 133344421
Q ss_pred Ccccc----CHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc-c---hH-HHHHHhhCCcEEEEeccccC-CCC--CC
Q 006746 250 PRLRI----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-P---YL-WMRIAQENDWHILIDACALG-PKD--MD 317 (632)
Q Consensus 250 ~~~~i----~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~-p---l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~ 317 (632)
....+ +.+.+++.+.... ...++..|.+.-+.+.+|... | ++ +.++|+++|+++++|-++.. +.. +.
T Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~ 251 (421)
T PRK09792 173 DLHGISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLF 251 (421)
T ss_pred ccccccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh
Confidence 11111 2367777776310 123577888888889999876 6 66 78899999999999997663 221 11
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhh
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 397 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 397 (632)
.+.--...||+ .++-|.+|. ---+|+++.+++.++.+.+...++
T Consensus 252 a~~~~~~~pDi--~t~gK~l~~-G~pigav~~~~~i~~~~~~~~~~~--------------------------------- 295 (421)
T PRK09792 252 AMDHYADKPDL--MTMAKSLAG-GMPLSGVVGNANIMDAPAPGGLGG--------------------------------- 295 (421)
T ss_pred HHHhcCCCCcE--EEeehhhcC-CCceEEEEEcHHHHhccCCCCcCC---------------------------------
Confidence 11111236895 566795551 123788888887765553211110
Q ss_pred hhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHH
Q 006746 398 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477 (632)
Q Consensus 398 ~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L 477 (632)
| |. | |.....+. .+.|+++.+ +.+.+|++.+.+++
T Consensus 296 ----T--~~----------g--npl~~aaa------------------------~a~l~~l~~---~~~~~~~~~~g~~l 330 (421)
T PRK09792 296 ----T--YA----------G--NPLAVAAA------------------------HAVLNIIDK---ESLCERANQLGQRL 330 (421)
T ss_pred ----C--CC----------C--CHHHHHHH------------------------HHHHHHHHh---hhHHHHHHHHHHHH
Confidence 0 00 0 00000111 145666654 35677888899999
Q ss_pred HHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC-CCc--cCHHHHHHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 478 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK-REK--IEPVLVQKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 478 ~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~-G~~--i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
.+.|.++.... |.+ ..+ .-+|.++.+.+.+.+ +.. .....+.+.+-++||.+...
T Consensus 331 ~~~l~~l~~~~----p~v--~~v---rG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~------------- 388 (421)
T PRK09792 331 KNTLIDAKESV----PAI--AAV---RGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTC------------- 388 (421)
T ss_pred HHHHHHHHHhC----CCc--cee---cccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeec-------------
Confidence 88888773211 322 111 234667777776421 111 11233444445578887410
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+....+||+.+.+..+.+||+++++.+.+.|.
T Consensus 389 -------------------------g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 389 -------------------------GAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred -------------------------CCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 01135899999999999999999999988763
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-06 Score=91.11 Aligned_cols=351 Identities=10% Similarity=0.022 Sum_probs=189.5
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+.+++.+.+..... + .. +....+...+.-+++.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-----------~------~~-------~~~~~~~~~~la~~l~ 93 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTH-----------T------CH-------QVVPYENYVRLAERLN 93 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccC-----------c------cc-------CccCCHHHHHHHHHHH
Confidence 57889997554 66677788887654432100 0 00 0001233345566677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHH----HHHhcC-----CEEEEEeccC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIR----TSEKRG-----ARVMSAEFSW 249 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~----~a~~~G-----~~v~~v~~~~ 249 (632)
+++.-.. ...|.|++++|+|...+++--. +....+|++ ...||......+.- ...+.+ ..+..+|+..
T Consensus 94 ~~~p~~~-~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (425)
T PRK07495 94 ALVPGDF-AKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPV 172 (425)
T ss_pred HhCCCCC-CCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCc
Confidence 7664221 1269999999998887654321 222334664 45677643333210 001111 1344555531
Q ss_pred CccccC----HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--CC
Q 006746 250 PRLRIN----SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--MD 317 (632)
Q Consensus 250 ~~~~i~----~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~ 317 (632)
....++ .+++++.+.... ....+..|.+.-+...+|...| ++ +.++|+++|+++++|-++.. |.. +.
T Consensus 173 ~~~g~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~ 251 (425)
T PRK07495 173 ELHGVSVEQSLAALDKLFKADV-DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF 251 (425)
T ss_pred ccccccHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce
Confidence 111122 344566664311 1234556655555545886643 44 67889999999999998663 221 11
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhh
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 397 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 397 (632)
..+.....||+++ +=|.+|. ..-+|++..+++.++.+.+...+++ |
T Consensus 252 a~~~~gv~pDi~t--lsK~l~~-G~pigav~~~~~i~~~~~~~~~~~T----------~--------------------- 297 (425)
T PRK07495 252 AMEHHEVAADLTT--MAKGLAG-GFPLAAVTGRAEIMDAPGPGGLGGT----------Y--------------------- 297 (425)
T ss_pred eecccCCCCCEEe--ehhhhcC-CccceEEEEcHHHHhccCCCCcCCC----------C---------------------
Confidence 1222224577654 4685551 1127888888877655543111100 0
Q ss_pred hhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHH
Q 006746 398 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477 (632)
Q Consensus 398 ~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L 477 (632)
.+ |.....+. .++|+++.+ +.+.+|++.+.++|
T Consensus 298 --~~------------------~pl~~aaa------------------------~a~l~~l~~---~~l~~~~~~~g~~l 330 (425)
T PRK07495 298 --GG------------------NPLGIAAA------------------------HAVLDVIEE---EDLCERANQLGNRL 330 (425)
T ss_pred --CC------------------CHHHHHHH------------------------HHHHHHHHh---chHHHHHHHHHHHH
Confidence 00 00001111 156777754 35778888899999
Q ss_pred HHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCCCccC---HHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 478 VNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKIE---PVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 478 ~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G~~i~---~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
.+.|+++.... |.+ .|- .+|-.+.+.+.+.+...-+ ...+.+.+-++|+.++..
T Consensus 331 ~~~L~~l~~~~----~~i~~vr------G~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~------------ 388 (425)
T PRK07495 331 KQRLASLRETV----PEIADIR------GPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTC------------ 388 (425)
T ss_pred HHHHHHHHhhC----CCeeeee------cCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec------------
Confidence 99988874211 322 221 2366667766543210001 223445555678887531
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+....+||+.+-+..|.+||+.+++.|.+.|.+
T Consensus 389 --------------------------g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~ 421 (425)
T PRK07495 389 --------------------------GVHGNVIRFLAPITIQDDVFAEALDILEASILE 421 (425)
T ss_pred --------------------------CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 011258999999999999999999999987753
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-06 Score=90.68 Aligned_cols=350 Identities=11% Similarity=0.048 Sum_probs=190.5
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..++ |--.+.+++++.+.+..... .. . .....+...+.-++++
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~------~~------------~------~~~~~~~~~~la~~l~ 86 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTH------TC------------F------MVTPYEGYVALAEKLN 86 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccC------cc------------c------cccCChHHHHHHHHHH
Confidence 57889997554 56667788876654432100 00 0 0001122235555676
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEE-EeccccchhhHHHHHHH-----HhcCC-----EEEEEecc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLL-TVYDYESEAVEAMIRTS-----EKRGA-----RVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~il-t~~d~~s~~v~~~~~~a-----~~~G~-----~v~~v~~~ 248 (632)
+++... ....|.|+.++|+|...+.+--..-.|+ +|+ ....||......| ... .+.|. .+..++..
T Consensus 87 ~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (420)
T TIGR00700 87 RIAPGS-GPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTM-ALTAKVMPYKSGFGPFAPEVYRAPLP 164 (420)
T ss_pred HhCCCC-CCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHH-HhcCCCcccccCCCCCCCCcEEeCCC
Confidence 766321 1127999999999888765432111343 465 4457886433333 211 11121 23334331
Q ss_pred CCcc------cc----CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-
Q 006746 249 WPRL------RI----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG- 312 (632)
Q Consensus 249 ~~~~------~i----~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~- 312 (632)
.+.. .. +.+.+++.|.... ....+..|++.-+...+|...| ++ +.++|+++|+++++|-++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~ 243 (420)
T TIGR00700 165 YPYRDGLLDKQLSTDGELAAARAIFVIDV-GANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGF 243 (420)
T ss_pred ccccccccccchhHHHHHHHHHHHHHhhc-CCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 0000 01 1345666653211 1245788888888888999888 77 88999999999999997653
Q ss_pred CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccc
Q 006746 313 PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 313 g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
+.. +..++-....||+++ +=|.+|. ---+|++++++++++.+.+...+
T Consensus 244 gr~g~~~a~~~~~~~pDi~~--lsK~l~~-G~pig~v~~~~~i~~~~~~~~~~--------------------------- 293 (420)
T TIGR00700 244 ARTGAMFACEHEGPEPDLIT--TAKSLAD-GLPLSGVTGRAEIMDAPAPGGLG--------------------------- 293 (420)
T ss_pred cccchhHHHhhcCCCCCEEE--eeccccC-CcceEEEEecHHHHhhcCCCCcC---------------------------
Confidence 221 112222234689655 6795551 22378899888776555331111
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 470 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~ 470 (632)
+|... .+++ ...+ .++|+.+.+ +.+.+|.
T Consensus 294 ----------~T~~~-~pl~------------~aaa-------------------------~a~l~~l~~---~~~~~~~ 322 (420)
T TIGR00700 294 ----------GTYAG-NPLA------------CAAA-------------------------LAVLAIIES---EGLIERA 322 (420)
T ss_pred ----------CCCCc-CHHH------------HHHH-------------------------HHHHHHHHh---ccHHHHH
Confidence 00000 0000 0011 145666654 3466777
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCH---HHHHHHHHhCCcEEccCccCChH
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP---VLVQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~---~~V~kla~~~gI~lr~G~~c~~~ 547 (632)
+.+.+.|.+.|.++.-. .|.+.-. ..+|.++.+.+.+.+...-+. ..+.+.+.++||.+..|.
T Consensus 323 ~~~g~~l~~~L~~l~~~----~~~~~~v-----rg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~----- 388 (420)
T TIGR00700 323 RQIGRLVTDRLTTLKAV----DPRIGDV-----RGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCG----- 388 (420)
T ss_pred HHHHHHHHHHHHHHHhh----CCCEEEe-----eccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccC-----
Confidence 88888888888776211 1322111 124677777664321100011 223333356788875430
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
. -..+||+++.+..|.+||+..++.|.++|.
T Consensus 389 --------------------------------~-f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 389 --------------------------------M-FGNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred --------------------------------C-CCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 0 125899999998899999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-06 Score=93.73 Aligned_cols=355 Identities=15% Similarity=0.091 Sum_probs=192.9
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.++.. + + -.+.| +. ..+...+.-+++.
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~----~--~-~~~~~---------------~~-~~~~~~~lae~L~ 100 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMREL----P--Y-ATGYF---------------HF-GSEPAIRLAAKLA 100 (459)
T ss_pred CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhc----C--C-ccccc---------------cc-CCHHHHHHHHHHH
Confidence 67889998754 444677888776544321 1 0 00000 00 1233345666676
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEE-EeccccchhhHHHHH-----HHHhcCC---EEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLL-TVYDYESEAVEAMIR-----TSEKRGA---RVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~il-t~~d~~s~~v~~~~~-----~a~~~G~---~v~~ 244 (632)
+++..+ -..|.|+.++|+|...+++--. + ++++ +|+ ....||......+.- ..+..|. .+..
T Consensus 101 ~~~p~~--~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~ 178 (459)
T PRK05965 101 ERAPGS--LNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHK 178 (459)
T ss_pred hhCCCC--cCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEE
Confidence 765322 2269999999999987665321 1 1233 465 455677632211110 0011121 1233
Q ss_pred EeccCCcc---ccC--------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-----HHHHHhhCCcEEEEec
Q 006746 245 AEFSWPRL---RIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-----WMRIAQENDWHILIDA 308 (632)
Q Consensus 245 v~~~~~~~---~i~--------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-----i~~~a~~~g~~vlvDa 308 (632)
++...+.. .-+ .+++++.|.... ...+..|.+.-+....|...|-+ +.++|+++|+++|+|-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DE 256 (459)
T PRK05965 179 IPSPYPYRNPVGDDPQAIIAASVAALRAKVAELG--ADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADE 256 (459)
T ss_pred cCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--CCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 43321110 012 256777776421 13466777776777788877543 3567999999999999
Q ss_pred cccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCC-CCceeecccccccccccccCCC
Q 006746 309 CALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFSSC 384 (632)
Q Consensus 309 aq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~-gG~v~~~~~~~~~~~~~~~~~~ 384 (632)
+|.+ |.. |-..+.-...||+++++ |-+|..-.=+|++.+++++++.+.+..- .|.+ +
T Consensus 257 V~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~---------~-------- 317 (459)
T PRK05965 257 VITGFGRTGPLFACEAEGVVPDLMTVA--KGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPV---------G-------- 317 (459)
T ss_pred hhccCccCchhhhHhhcCCCCCeEEec--hhhccCCcceeEEEEcHHHHHHHhccccccccc---------c--------
Confidence 8764 321 11111223479999885 8444210128999999888765432100 0000 0
Q ss_pred CCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHH
Q 006746 385 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 464 (632)
Q Consensus 385 ~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~ 464 (632)
..+|.. ..+++. ..+ .+.|+.+++ +
T Consensus 318 --------------h~~T~~-gnpl~~------------Aaa-------------------------~a~L~~l~~---~ 342 (459)
T PRK05965 318 --------------HGYTYS-AHPVSA------------AVG-------------------------LEVLRLYHE---G 342 (459)
T ss_pred --------------ccCCCC-CCHHHH------------HHH-------------------------HHHHHHHHh---c
Confidence 011100 001110 111 156666655 3
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC--CccC-----HHHHHHHHHhCCcE
Q 006746 465 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADRENIS 537 (632)
Q Consensus 465 ~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G--~~i~-----~~~V~kla~~~gI~ 537 (632)
.+.+|++.+.++|.+.|.++. .. |.| +. -.-+|.++.+.+.+... +..+ ...+.+.+.++||.
T Consensus 343 ~l~~~~~~~g~~l~~~l~~l~-~~----~~v---~~--vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll 412 (459)
T PRK05965 343 GLLANGQKAGPRFAAGLDALR-AH----PLV---GD--VRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLV 412 (459)
T ss_pred cHHHHHHHHHHHHHHHHHhhc-cC----CCE---EE--EeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeE
Confidence 567788899999999998873 11 322 11 12356777777653211 1111 22344455567887
Q ss_pred EccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 538 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 538 lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
++. .+..+||+++.+..|.+||+++++.+.+.|+.
T Consensus 413 ~~~----------------------------------------~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~ 447 (459)
T PRK05965 413 FRA----------------------------------------FGDGVLGFAPALCCTEGEFDLIFERTRKTLDD 447 (459)
T ss_pred EEe----------------------------------------cCCcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 752 12347999999999999999999999998865
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-06 Score=92.35 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=165.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CC-------C------CCeEE-EeccccchhhHHHHHHHHh
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FM-------S------VKNLL-TVYDYESEAVEAMIRTSEK 237 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~-------~------gd~il-t~~d~~s~~v~~~~~~a~~ 237 (632)
.+.-+++.+.... + .|.|++++|+|...+.+--. +. + ..+|+ ....||......+. ....
T Consensus 60 ~~la~~l~~~~~~--~--~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s-~~~~ 134 (382)
T PLN00144 60 VELAKRLVASSFA--D--RVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALA-LTSK 134 (382)
T ss_pred HHHHHHHHhcCCC--C--eEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHh-cCCC
Confidence 3455556665532 2 79999999998887654321 11 0 13465 45577763332221 1000
Q ss_pred cCC---------EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcE
Q 006746 238 RGA---------RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWH 303 (632)
Q Consensus 238 ~G~---------~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~ 303 (632)
... .+..+|. -|++.+++.+... .++.|.+.-+.+..|...| ++ +.++|+++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~------~d~~~l~~~~~~~-----~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~l 203 (382)
T PLN00144 135 EQYRTPFEPLMPGVTFVEY------GNLEAARKLIQKG-----KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGAL 203 (382)
T ss_pred ccccccCCCCCCCeEEeCC------CCHHHHHHhcCCC-----CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 000 1222222 1578888877432 3556666656777665542 56 78899999999
Q ss_pred EEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccc
Q 006746 304 ILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDE 380 (632)
Q Consensus 304 vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~ 380 (632)
+++|-++.. +.. +...++....|| +.++=|.+|. -.-+|+++++++.++.+.+...+++ |
T Consensus 204 lI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~~-G~pig~v~~~~~~~~~~~~~~~~~T----------~---- 266 (382)
T PLN00144 204 LVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLAG-GLPIGAVLVTEKVASAINPGDHGST----------F---- 266 (382)
T ss_pred EEEechhhCCCccchHhhhhhcCCCCC--EEEecccccC-CcceEEEEEcHHHHhccCCCCCCCC----------C----
Confidence 999998653 221 112234456789 5666795541 1237999998887765543211100 0
Q ss_pred cCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh
Q 006746 381 FSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS 460 (632)
Q Consensus 381 ~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~ 460 (632)
.+ .+++ ..+. .+.|+++.+
T Consensus 267 -------------------~~-----~pl~-------------~aaa------------------------~a~l~~i~~ 285 (382)
T PLN00144 267 -------------------AG-----GPLV-------------CNAA------------------------LAVLDKISK 285 (382)
T ss_pred -------------------CC-----CHHH-------------HHHH------------------------HHHHHHHhh
Confidence 00 0000 0111 256677754
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEc
Q 006746 461 LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS 539 (632)
Q Consensus 461 ~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr 539 (632)
..+.+|++.+.++|++.|.++-... |.+ .+- .+|..+.+.+ ++ +...+.+.+.++||.+.
T Consensus 286 ---~~~~~~~~~~g~~l~~~l~~~~~~~----~~~~~vr------g~G~~~~l~l-~~-----~~~~~~~~~~~~Gv~i~ 346 (382)
T PLN00144 286 ---PGFLASVAKKGEYLRELLRRKLGGN----PHVKEVR------GVGLLVGIQL-DV-----PAGPLVDACRDSGLLVL 346 (382)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHhhC----CCceeee------cCceEEEEEe-cC-----ccHHHHHHHHHCCeEEe
Confidence 4566778888888877777652111 221 221 2566777666 32 23455566667899886
Q ss_pred cCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 540 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 540 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+ . ...+||+++.+..|.+||+..++.|.+.|..
T Consensus 347 ~~--------------------------------------~-~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 347 TA--------------------------------------G-KGDVVRLVPPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred ec--------------------------------------C-CCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence 43 0 1258999999988899999999999988753
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-06 Score=92.96 Aligned_cols=353 Identities=12% Similarity=0.150 Sum_probs=194.7
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..+. |--.+.+++++.+.+... | ++ +..+.. ..+...+.-++|+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~----~-------~~-------~~~~~~-----~~~~~~~lae~L~ 102 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKL----P-------FY-------HTFSHK-----SHGPVIDLAEKLV 102 (460)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhC----C-------Ce-------eccccc-----CCHHHHHHHHHHH
Confidence 67889998653 345677778776544321 1 00 000000 1233345667777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEEE-eccccchhhHHHHHHH------HhcC---CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLLT-VYDYESEAVEAMIRTS------EKRG---ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~ilt-~~d~~s~~v~~~~~~a------~~~G---~~v~ 243 (632)
+++..+ -..|.|++++|+|...+.+... + .+++ +|+. ...||......+ .+. +..| ..+.
T Consensus 103 ~~~p~~--~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~-s~t~~~~~~~~~~~~~~~~~ 179 (460)
T PRK06105 103 AMAPVP--MSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASA-SLTGLPNNHRSFDLPLDRIL 179 (460)
T ss_pred HhCCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhhe-eccCCcccccccCCCCCCCE
Confidence 776432 1269999999999988776521 0 1233 4654 456776433221 110 0111 1122
Q ss_pred EEeccCC-c----c-------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEE
Q 006746 244 SAEFSWP-R----L-------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILI 306 (632)
Q Consensus 244 ~v~~~~~-~----~-------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlv 306 (632)
.++.... . + ..+.+++++.|.... ..++..|++--+....|...| ++ +.++|+++|+++++
T Consensus 180 ~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~--~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~ 257 (460)
T PRK06105 180 HTGCPHYYRFGLPGESEEAFATRLANELEALILAEG--PDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVA 257 (460)
T ss_pred EcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcC--CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEE
Confidence 3322100 0 0 012356777775311 235677788777778899888 77 88899999999999
Q ss_pred ecccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccC
Q 006746 307 DACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 307 Daaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~ 382 (632)
|-+|. +|.- +-..+.....||+++++ |.+|..---+|++++++++++.+.+.... |... +
T Consensus 258 DEv~tG~GRtG~~f~~~~~~v~PDi~~~g--K~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~--------h------ 321 (460)
T PRK06105 258 DEVICGFGRTGNMFGCETFGIKPDILVMS--KQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFG--------H------ 321 (460)
T ss_pred eccccCCCcCchhhhHHhcCCCCCeeeee--cccccCcccceEEEEcHHHHHHHhcccccCcccc--------c------
Confidence 99885 3421 11122233479988664 85552100178888888776544331100 0000 0
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
.+|.. ..+++. ..+ .+.|+++++.
T Consensus 322 -----------------~~T~~-gnpl~~------------aaa-------------------------~a~L~~i~~~- 345 (460)
T PRK06105 322 -----------------GFTAS-GHPVAA------------AVA-------------------------LENLAIIEER- 345 (460)
T ss_pred -----------------CCCCC-CCHHHH------------HHH-------------------------HHHHHHHHhc-
Confidence 01100 001110 011 2567777653
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC--CccC-----HHHHHHHHHhCC
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADREN 535 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G--~~i~-----~~~V~kla~~~g 535 (632)
.+.++++.+.++|.+.|.++ ... |.| +. . .-+|-++.+.+.+..+ +..+ ...+.+.+.++|
T Consensus 346 --~l~~~v~~~g~~l~~~L~~l-~~~----~~v---~~-v-rG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~G 413 (460)
T PRK06105 346 --DLVGNAAERGARLQARLRAL-ADH----PLV---GE-V-RGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHG 413 (460)
T ss_pred --cHHHHHHHHHHHHHHHHHHh-hcC----CCe---EE-E-EecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCC
Confidence 56788899999999999887 222 322 11 0 1356777777643221 1111 123444455677
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|.++.. + .+||+++.+..|.+||+++++.+.+.|+.
T Consensus 414 vl~~~~----------------------------------------g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 449 (460)
T PRK06105 414 VISRAM----------------------------------------G-DTLAFCPPLIITAAQVDEMVDRFGRALDD 449 (460)
T ss_pred eEEEec----------------------------------------C-CEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 776420 1 48999999999999999999999988764
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-06 Score=95.87 Aligned_cols=362 Identities=11% Similarity=0.134 Sum_probs=195.0
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..+. |--.+.+.+++.+.+... + + ... ++....+...+.-+++.
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~----~--~------------~~~-----~~~~~~~~~~~lae~L~ 105 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRL----P--Y------------YTP-----FGDMTNAPAAELAAKLA 105 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhC----c--c------------ccc-----ccccCCHHHHHHHHHHH
Confidence 67889998655 555677777765543221 0 0 000 00001233345666666
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEEE-eccccchhhHHHHHHH----HhcC-----CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLLT-VYDYESEAVEAMIRTS----EKRG-----ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~ilt-~~d~~s~~v~~~~~~a----~~~G-----~~v~ 243 (632)
+++... -..|.|+.|+|+|+..+++--. + .+++ +|+. ...||....-.+ ... .+.+ ..+.
T Consensus 106 ~~~p~~--~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~-s~~~~~~~~~~~~~~~~~~~ 182 (466)
T PRK07036 106 ELAPGD--LNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTA-SLTGKAADRTEFDYASDLVH 182 (466)
T ss_pred HhCCCC--cCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhh-cccCCCcccccccCCCCCcE
Confidence 665322 2269999999998887655321 1 1233 4654 446776322111 110 0001 1233
Q ss_pred EEeccCC----ccc-------cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEe
Q 006746 244 SAEFSWP----RLR-------INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILID 307 (632)
Q Consensus 244 ~v~~~~~----~~~-------i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvD 307 (632)
.++.... .+. ...+.+++.|... ....+..|++.-+....|...| ++ +.++|+++|+++++|
T Consensus 183 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~D 260 (466)
T PRK07036 183 HLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSL--GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISD 260 (466)
T ss_pred EecCCcccccccCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 4433211 110 0123455555431 1245778888888888899988 77 889999999999999
Q ss_pred ccccC-CCC--CCCCC-CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 308 ACALG-PKD--MDSFG-LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 308 aaq~~-g~~--m~~ld-ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
-+|.+ |.- |.-.. .-...||++++ =|.+|..-.-+|++.++++.++.+.+....|.. +. .
T Consensus 261 EV~tGfGRtG~~~~~~~~~gv~PDivt~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~---------~~-~---- 324 (466)
T PRK07036 261 EVVTGFGRLGHFFASEAVFGIQPDIITF--AKGLTSGYQPLGAVIISERLLDVISGPNAKGNV---------FT-H---- 324 (466)
T ss_pred echhCCCcCchhhhhhhhcCCCCCEEEE--ccccccCccccEEEEEcHHHHHHHhcccCcCcc---------cc-c----
Confidence 98753 321 11111 11346898876 485552100179999998887655431000000 00 0
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 463 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl 463 (632)
.+|.. ..+++ ..+. .+.|+.+.+
T Consensus 325 ----------------~~T~~-gnpl~-------------~aaa------------------------~a~Le~i~~--- 347 (466)
T PRK07036 325 ----------------GFTYS-GHPVA-------------CAAA------------------------LKNIEIMER--- 347 (466)
T ss_pred ----------------CCCCC-CCHHH-------------HHHH------------------------HHHHHHHHh---
Confidence 01100 00111 1111 155666654
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCC--CccC-----HHHHHHHHHhCC
Q 006746 464 TMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADREN 535 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G--~~i~-----~~~V~kla~~~g 535 (632)
+.+.++++.+.++|.+.|.++.. .|.| .+ .-+|.++.+.+.+..+ +... ...+.+.+.++|
T Consensus 348 ~~l~~~~~~~g~~l~~~L~~l~~-----~~~v~~v------rG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 416 (466)
T PRK07036 348 EGLCEHVREVGPYFEERLASLRE-----LPLVGDV------RGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERG 416 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcc-----CCCEEEE------EeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCC
Confidence 35678888888888888887621 1322 12 2356777777643221 1111 123444455567
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh---
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA--- 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~--- 612 (632)
|.++. .+ .++|+++.+..|.+||+.+++.+.+.|+.
T Consensus 417 vl~~~----------------------------------------~~-~~~~l~Ppl~it~~~id~~~~~l~~al~~~~~ 455 (466)
T PRK07036 417 LLVRP----------------------------------------LE-HLCVLSPPLIITRAQIDEIVAILRAAIEETAD 455 (466)
T ss_pred cEEee----------------------------------------cC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 76641 11 47899999999999999999999877754
Q ss_pred cccccccce
Q 006746 613 DFVEKARWR 621 (632)
Q Consensus 613 ~f~~~~~~~ 621 (632)
.+..+..||
T Consensus 456 ~~~~~~~~~ 464 (466)
T PRK07036 456 ELAAHGLWR 464 (466)
T ss_pred HHHhccccC
Confidence 233455776
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-09 Score=111.74 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHH--HHHHHHhcCCEEEEEec
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEA--MIRTSEKRGARVMSAEF 247 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~--~~~~a~~~G~~v~~v~~ 247 (632)
.-+..+.+.++.+.||. ..+.++|...|+-+++..+ -+|.+|+++..+--+.-.. +-+..+..|++++.|-.
T Consensus 47 ~R~~~v~~ll~~ltgAe----aA~VvNnnaAAv~L~l~~l--a~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGt 120 (367)
T PF03841_consen 47 SRYAHVEELLCELTGAE----AALVVNNNAAAVLLALNTL--AKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGT 120 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccc----ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc
Confidence 33456778889999995 2455788888888888887 4577776554433221111 22444567999888764
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC--cc--ccchH-HHHHHhhCCcEEEEecccc---------CC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT--GA--RYPYL-WMRIAQENDWHILIDACAL---------GP 313 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T--G~--~~pl~-i~~~a~~~g~~vlvDaaq~---------~g 313 (632)
. .+...+|++++|+++| .++..-|.||+. |. ..|++ ++++||++|+++++|+++. .|
T Consensus 121 t---N~t~~~Dye~AI~e~T------a~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~ 191 (367)
T PF03841_consen 121 T---NRTHLSDYEKAITENT------AALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLP 191 (367)
T ss_dssp -------------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT---
T ss_pred c---cccccccccccccccc------cccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCc
Confidence 3 3467899999999876 788888888874 32 35788 9999999999999999871 22
Q ss_pred CCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 314 KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 314 ~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
....--+.-+.++|.++||+-|++|. |. .|++.-|++.+++++.
T Consensus 192 ~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQ-aGiI~Gkk~lI~~lk~ 235 (367)
T PF03841_consen 192 DEPTVQEYLAAGADLVTFSGDKLLGG-PQ-AGIIVGKKELIEKLKK 235 (367)
T ss_dssp -------CCCCT-SEEEEETTSSSSS--S--EEEEEEHHHHHHHHH
T ss_pred cccHHHHHhhcCCCEEEEECCCcCCC-CC-eEEEEeCHHHHHHHhh
Confidence 21001122346899999999998886 86 6999999999987754
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-06 Score=94.44 Aligned_cols=214 Identities=15% Similarity=0.195 Sum_probs=120.6
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|+|..+. |--.+.+.+++.+.+... + .+ + ...+...+.-+++.
T Consensus 51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~-------~~---------------~-~~~~~~~~la~~L~ 103 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERG----T-------SY---------------G-LTSEQEILFAEELF 103 (433)
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC----C-------CC---------------C-CCCHHHHHHHHHHH
Confidence 57889999654 555677777765543221 0 00 0 01223345666666
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHH-HHHHHHh-cCC-EE-EEEeccC--Cc-
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEA-MIRTSEK-RGA-RV-MSAEFSW--PR- 251 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~-~~~~a~~-~G~-~v-~~v~~~~--~~- 251 (632)
+.+... ...|.|+.++|+|...+.+--..-.|+ +|++ ...||. ...| +...+.. ... .. ....... +.
T Consensus 104 ~~~~~~--~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG-~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (433)
T PRK00615 104 SYLGLE--DHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHG-HADTLLQGISFSETSLDTLTHLVDTDLAHPLT 180 (433)
T ss_pred HhCCCC--cCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCC-CCcccCcccccCCCCcCcCCCCCCCCCCCCCe
Confidence 776432 137999999999988765533212354 4654 446775 2222 1111100 000 00 0000000 00
Q ss_pred c---ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch----H-HHHHHhhCCcEEEEeccccC---CCCCCCCC
Q 006746 252 L---RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY----L-WMRIAQENDWHILIDACALG---PKDMDSFG 320 (632)
Q Consensus 252 ~---~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl----~-i~~~a~~~g~~vlvDaaq~~---g~~m~~ld 320 (632)
. .-+.+++++.|.... ..+..|++.-+....|...|. + +.++|+++|+++++|-+|.+ |. +....
T Consensus 181 ~~~~~~d~~~l~~~l~~~~---~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~-~ga~~ 256 (433)
T PRK00615 181 LSLPYNDFQIFQTVMNSLG---HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQ-GGAAA 256 (433)
T ss_pred EeCCCCCHHHHHHHHHhcC---CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccH-hHHHH
Confidence 0 125788888886432 346788888888888998874 4 77899999999999998842 21 11111
Q ss_pred CCCCCCcEEEEccccccCC-CCCceEEEEEeCCCccccC
Q 006746 321 LSLVRPDFLICSFYQIFGE-NPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~-~P~G~G~L~Vr~~~~~~L~ 358 (632)
.-...||+++ +=|.+|. .| +|++..+++.++.+.
T Consensus 257 ~~gv~PDi~~--~gK~lggG~p--~~av~~~~~i~~~~~ 291 (433)
T PRK00615 257 IYHVKPDITV--YGKILGGGLP--AAAVVAHKSIMDHLA 291 (433)
T ss_pred hcCCCCCeEE--EcccccCCcc--eeeeeecHHHHhhhc
Confidence 1123789876 5686652 12 788888888776553
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=95.86 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC--CeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV--KNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g--d~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
-+.+-+....|+++.|.+.. ..-+-.++|.+...+.-+.....+ ++|+++. -|+. ....+...++-.|++++.+
T Consensus 109 Lq~lfe~Qs~i~eLTGmdva--NaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~-~~~v~~t~a~~~g~~iv~~ 185 (429)
T PF02347_consen 109 LQALFEYQSMICELTGMDVA--NASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQ-TRAVLRTYAAPLGIEIVEV 185 (429)
T ss_dssp HHHHHHHHHHHHHHHTSSEE---SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CH-HHHHHHHHCCHCCEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCcc--CCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChh-hHHHHHHhhhhCCeEEEEe
Confidence 35666899999999998732 123344666665555444333333 4676655 4554 4555666777789999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecc---ccCCCCCCCCCC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDAC---ALGPKDMDSFGL 321 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaa---q~~g~~m~~ldl 321 (632)
+.+ +.+..+ ++ .+..|.++.. |..|..-+++ |++++|++|.++++ ++ ++++.. .|
T Consensus 186 ~~~-~~~~~d--------~~------~~a~v~vq~P-n~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~-~P--- 244 (429)
T PF02347_consen 186 PLD-EDGTTD--------DD------DTAAVMVQNP-NTFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLK-SP--- 244 (429)
T ss_dssp -BB-TTCSB---------ST------TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC---G---
T ss_pred ccc-ccCCcc--------cc------CeEEEEeecC-CCCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcC-Ch---
Confidence 887 444444 22 3455666655 5799999999 99999999999887 44 333221 12
Q ss_pred CCCCCcEEEEccccccCC----CCCceEEEEEeCCCccccCCCCCC
Q 006746 322 SLVRPDFLICSFYQIFGE----NPSGFGCLFVKKSTVPILVDNTSS 363 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~----~P~G~G~L~Vr~~~~~~L~~~~~g 363 (632)
.++++|+++.. ||-||. ..+|+|++-+|++....+.-+..|
T Consensus 245 ge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG 289 (429)
T PF02347_consen 245 GEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVG 289 (429)
T ss_dssp GGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEE
T ss_pred hhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceec
Confidence 45789999666 775543 123789999999977666554443
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-06 Score=91.72 Aligned_cols=309 Identities=11% Similarity=0.092 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEE-EeccccchhhHHHHHHHH-----hc--C--
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLL-TVYDYESEAVEAMIRTSE-----KR--G-- 239 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~il-t~~d~~s~~v~~~~~~a~-----~~--G-- 239 (632)
...+.-+++++++.... ...|.|++++|+|...+++--..-.|+ +|+ ....||......+ .... +. +
T Consensus 86 ~~~~lae~L~~~~p~~~-~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~al-s~s~~~~~~~~~~~~~ 163 (445)
T PRK08593 86 PLVRLAKKLCELAPGDF-EKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSL-SMSGISLNMRRKYGPL 163 (445)
T ss_pred HHHHHHHHHHHhCCCCC-CCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHH-hhcCCCcccccCCCCC
Confidence 33466677777764321 127999999999988766532111344 455 4456776333222 1110 01 1
Q ss_pred -CEEEEEeccCCc----cccC-------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCc
Q 006746 240 -ARVMSAEFSWPR----LRIN-------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDW 302 (632)
Q Consensus 240 -~~v~~v~~~~~~----~~i~-------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~ 302 (632)
..+..+|..... ...+ .+++++.+.... ....+..|++--+....|...| ++ +.++|+++|+
T Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~ 242 (445)
T PRK08593 164 LPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGI 242 (445)
T ss_pred CCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 123344432110 0011 133444443210 0235678888888888899888 77 8899999999
Q ss_pred EEEEecccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccccc
Q 006746 303 HILIDACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTD 379 (632)
Q Consensus 303 ~vlvDaaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~ 379 (632)
++++|-++. +|.. +...+.-...||+++ +=|.+|. -.-+|++..+++.++.+.+...+
T Consensus 243 llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t--~gK~l~~-G~p~gav~~~~~i~~~~~~~~~~---------------- 303 (445)
T PRK08593 243 LFAVDDIQQGLGRTGKWSSISHFNITPDLMS--FGKSLAG-GMPMSAIVGRKEIMESLEAPAHL---------------- 303 (445)
T ss_pred EEEEechhhCCCcCchHHHHHhcCCCCCEee--ecccccC-CcccEEEEEcHHHHhhhccCCCC----------------
Confidence 999999874 3321 101111123689775 4585542 11278888888876555321100
Q ss_pred ccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHH
Q 006746 380 EFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD 459 (632)
Q Consensus 380 ~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~ 459 (632)
.| | .|+| ....+. .+.|+.+.
T Consensus 304 ---------------------~T--~----------~~~p--l~~aaa------------------------~a~l~~l~ 324 (445)
T PRK08593 304 ---------------------FT--T----------GANP--VSCAAA------------------------LATIDMIE 324 (445)
T ss_pred ---------------------CC--C----------CCCH--HHHHHH------------------------HHHHHHHH
Confidence 00 0 0000 001111 15666665
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCcc-CH---HHHHHHHHhCC
Q 006746 460 SLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI-EP---VLVQKLADREN 535 (632)
Q Consensus 460 ~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i-~~---~~V~kla~~~g 535 (632)
+ +.+.+|++.+.++|.+.|.++.... |.| +.- .-+|.++.+.+.+...... +. ..+.+.+.++|
T Consensus 325 ~---~~l~~~~~~~g~~l~~~L~~l~~~~----~~v---~~v--rG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~G 392 (445)
T PRK08593 325 D---ESLLQRSAEKGEYARKRFDQWVSKY----NFV---GDV--RGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHG 392 (445)
T ss_pred h---ccHHHHHHHHHHHHHHHHHHHHhcC----CcE---EEE--eccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCC
Confidence 4 3567888889999999988773211 322 110 1245566665543111111 11 22333334567
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|.+.. .+..++|+++.+..|.+||+++++.+.+.++.
T Consensus 393 v~~~~----------------------------------------~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 429 (445)
T PRK08593 393 VVIIA----------------------------------------VAGNVLRFQPPLVITYEQLDTALNTIEQAFTA 429 (445)
T ss_pred eEEec----------------------------------------cCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 76631 02258999999999999999999999988764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.5e-06 Score=91.80 Aligned_cols=333 Identities=13% Similarity=0.095 Sum_probs=182.5
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..++ |--.+.+.+++.+.+... + .. .+. + ..+...+.-+++.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~----~~---------~~~-----~---~~~~~~~la~~L~ 92 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKL----W----HT---------SNV-----F---YSAPPLKLAEELV 92 (408)
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhc----c----cc---------ccc-----c---CCHHHHHHHHHHH
Confidence 67889998644 555667777766543321 0 00 000 0 0122234555555
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C--C----CCC-eEEE-eccccchhhHHHHHHH----HhcCC-----EE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F--M----SVK-NLLT-VYDYESEAVEAMIRTS----EKRGA-----RV 242 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~--~----~gd-~ilt-~~d~~s~~v~~~~~~a----~~~G~-----~v 242 (632)
+++.. ...+.|+.|+|+|...+++--. + . +++ +|++ ...||......+. .. .+.+. .+
T Consensus 93 ~~~~~---~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s-~~~~~~~~~~~~~~~~~~ 168 (408)
T PRK04612 93 TASRF---AEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVT-ATAQPKYQEGYEPLPGGF 168 (408)
T ss_pred hhCCC---CCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHH-hcCCcccccCCCCCCCCc
Confidence 55432 1279999999999887664321 1 1 123 4654 4567764332221 10 01111 11
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKDM 316 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~m 316 (632)
..++. -+.+.+++.+..+ .+..|.+.-+....|...| ++ +.++|+++|+++++|-++.. |..
T Consensus 169 ~~~~~------~d~~~l~~~~~~~-----~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~- 236 (408)
T PRK04612 169 RYVDF------NDVEALEAAMAGG-----DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRT- 236 (408)
T ss_pred eEcCC------CCHHHHHHhhCCC-----CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-
Confidence 12221 1578888877532 3456655555444455543 55 78899999999999998753 221
Q ss_pred CC-CC--CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 317 DS-FG--LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 317 ~~-ld--ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
.. +- .....||++ ++=|.+|. ---+|+++.+++.++.+.....+
T Consensus 237 G~~~a~~~~~~~pdi~--t~~K~l~~-G~piga~~~~~~~~~~~~~~~~~------------------------------ 283 (408)
T PRK04612 237 GTLFAHWQEQVTPDIV--TLAKALGG-GFPIGAMLAGPKVAETMQFGAHG------------------------------ 283 (408)
T ss_pred CchhhhhhcCCCCCEE--EEcchhcC-CCceEEEEECHHHHhhhcCCCcC------------------------------
Confidence 11 11 112244554 55796662 11278888777655444321100
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.| |.+ |.....+. .+.|+.+.+ +.+.+|++.+
T Consensus 284 -------~t--~~~------------~p~~~aaa------------------------~a~L~~~~~---~~l~~~~~~~ 315 (408)
T PRK04612 284 -------TT--FGG------------NPLAAAVA------------------------RVALRKLAS---PQIAANVARQ 315 (408)
T ss_pred -------CC--CCC------------CHHHHHHH------------------------HHHHHHHHh---ccHHHHHHHH
Confidence 00 000 00001111 256776654 4567888999
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
.++|.+.|.++.-.. +.+ +.- ..+|.++.+.+.+... -....+.+.+.++||.+..
T Consensus 316 g~~l~~~l~~l~~~~----~~i---~~v--rg~Gl~~~i~~~~~~~--~~a~~i~~~l~~~Gvlv~~------------- 371 (408)
T PRK04612 316 SAALRAGLEALNAEF----GVF---AQV--RGRGLMLGAVLAPAHA--GQAGAILDLAAEHGLLLLQ------------- 371 (408)
T ss_pred HHHHHHHHHHHHhhC----CCe---eee--eccceEEEEEecCchh--hHHHHHHHHHHHCCeEEee-------------
Confidence 999999998873211 222 211 2356677776643111 0134455566677887741
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+..+||+.+++..|.+||+++++.+.+.|..
T Consensus 372 ---------------------------~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~ 403 (408)
T PRK04612 372 ---------------------------AGPDVLRFVPALNLTDAELADGLARLRLALAD 403 (408)
T ss_pred ---------------------------CCCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 12358999999999999999999999988764
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.2e-07 Score=91.01 Aligned_cols=290 Identities=14% Similarity=0.166 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.++......+||+|-+-. +.|+-++.-.|.--+.+++ ..|.|-|+.+.-+|+..+.++ +++++++
T Consensus 111 q~iHk~LE~kiAqfh~rE----D~ilypscfdANag~feai-l~pedAvfSDeLNhASIIdGi-rLckry~--------- 175 (417)
T KOG1359|consen 111 QDIHKLLESKIAQFHGRE----DTILYPSCFDANAGAFEAI-LTPEDAVFSDELNHASIIDGI-RLCKRYR--------- 175 (417)
T ss_pred hHHHHHHHHHHHHHhCCC----ceEEeccccccchHHHHHh-cChhhhhhccccccchhhhhh-HHHhhhc---------
Confidence 356677888899887753 2444556666666666666 566666776654444477774 4566443
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC--------CCCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP--------KDMDSF 319 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g--------~~m~~l 319 (632)
.+|.-+|+..+.++. +.+.+||+...+-++-|-..|++ |+.+++++|.++++|-++.-| ++ ..+
T Consensus 176 ----h~dv~~l~~~l~~a~--k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~-E~~ 248 (417)
T KOG1359|consen 176 ----HVDVFDLEHCLISAC--KMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTA-EEF 248 (417)
T ss_pred ----cchhHHHHHHHHHhh--hheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChH-HHh
Confidence 245556666555432 45679999999999999999999 999999999999999876542 21 223
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
++ .-++|.+....-|.+|. ..-|+.-..+.+++.|+... ++|..++. +
T Consensus 249 ~v-m~~vdiinsTLgKAlGg--a~GGyttgp~~li~llrqr~-----------RpylFSns-----l------------- 296 (417)
T KOG1359|consen 249 GV-MGDVDIINSTLGKALGG--ASGGYTTGPKPLISLLRQRS-----------RPYLFSNS-----L------------- 296 (417)
T ss_pred CC-CCcceehhhhhhhhhcC--CCCCCccCChhHHHHHHhcC-----------CceeecCC-----C-------------
Confidence 33 23689999999997772 12244333444443332210 11111000 0
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
-|.+.+.. .+++|++- +-..+..+.+...+|+++
T Consensus 297 ---------------------ppavV~~a-----------------------~ka~dllm--~s~~~i~~~~a~~qrfr~ 330 (417)
T KOG1359|consen 297 ---------------------PPAVVGMA-----------------------AKAYDLLM--VSSKEIQSRQANTQRFRE 330 (417)
T ss_pred ---------------------Chhhhhhh-----------------------HHHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence 01112221 26666663 345667788888889998
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHH---hCCcEEccCccCChHHHhHHHHhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLAD---RENISLSYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~---~~gI~lr~G~~c~~~~~~~~~~~~ 556 (632)
.+..- ++.|-|.. -||....+-| ..+..++++ +.||.+- |+ . |
T Consensus 331 ~me~a---------GftIsg~~-----hPI~pv~lGd-------a~lA~~~ad~lLk~Gi~Vi-gf------s--~---- 376 (417)
T KOG1359|consen 331 FMEAA---------GFTISGAS-----HPICPVMLGD-------ARLASKMADELLKRGIYVI-GF------S--Y---- 376 (417)
T ss_pred HHHhc---------CceecCCC-----CCccceeccc-------HHHHHHHHHHHHhcCceEE-ee------c--C----
Confidence 88764 47776642 3455444443 233333333 3577773 11 0 0
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+. -+.+.-.|||-+.-.+|+||||++++++.+..+.
T Consensus 377 ------------Pv--------VP~gkariRVqiSAaHt~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 377 ------------PV--------VPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred ------------Cc--------CCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence 01 1223458999999999999999999998876553
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.9e-06 Score=92.91 Aligned_cols=308 Identities=10% Similarity=0.052 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEE-EeccccchhhHHHHH----HHHhc
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLL-TVYDYESEAVEAMIR----TSEKR 238 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~il-t~~d~~s~~v~~~~~----~a~~~ 238 (632)
...+.-+++.+.+... -..|.|+.++|+|+..+.+--. + ++++ +|+ ....||....-.|.- ...+.
T Consensus 88 ~~~~lae~L~~~~p~~--~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~ 165 (429)
T PRK06173 88 PAVELAQKLLEILPPS--LNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHG 165 (429)
T ss_pred HHHHHHHHHHhhCCCC--cCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhh
Confidence 3346666777766422 2379999999998887654321 1 1333 355 445677632221110 00011
Q ss_pred C-----CEEEEEeccCCc-----cccCHHHHHHHHHhcCcCCCceeEEEEecc-CCCCccccchH-----HHHHHhhCCc
Q 006746 239 G-----ARVMSAEFSWPR-----LRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYPYL-----WMRIAQENDW 302 (632)
Q Consensus 239 G-----~~v~~v~~~~~~-----~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~-sn~TG~~~pl~-----i~~~a~~~g~ 302 (632)
+ ..+..+|..... ...+++.+++.|... ...+..|.+.-+ ....|...|-. +.++|+++|+
T Consensus 166 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~---~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~ 242 (429)
T PRK06173 166 LFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQK---GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV 242 (429)
T ss_pred cccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhC---CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC
Confidence 1 112333331000 011355677777632 235677777764 67778875432 4578999999
Q ss_pred EEEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccccc
Q 006746 303 HILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTD 379 (632)
Q Consensus 303 ~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~ 379 (632)
++++|-+|.+ |.. +...+.....||+++ +=|.+|..-.-++.++++++.++.+.+.. .+. +.
T Consensus 243 llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG~~p~~a~~~~~~i~~~~~~~~-~~~---------~~--- 307 (429)
T PRK06173 243 LLIFDEIATGFGRTGKLFALEHAGVVPDIMC--IGKALTGGYLTLSATITTEAIAQTICSGE-AKC---------FM--- 307 (429)
T ss_pred eEEecchhcCCCcCCcchHHHhcCCCCCEEE--eehhhhCCccccceEEecHHHHHHHhcCC-CCc---------cc---
Confidence 9999998853 211 111111233689887 57854421012577888887665443210 000 00
Q ss_pred ccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHH
Q 006746 380 EFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD 459 (632)
Q Consensus 380 ~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~ 459 (632)
..+|... .+++ ..+. .++|+++.
T Consensus 308 -------------------~~~T~~g-~p~~-------------~aaa------------------------~a~l~~i~ 330 (429)
T PRK06173 308 -------------------HGPTFMA-NPLA-------------CAIA------------------------AESIRLLL 330 (429)
T ss_pred -------------------cCCCCCc-CHHH-------------HHHH------------------------HHHHHHHH
Confidence 0111000 0111 1111 26777776
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEc
Q 006746 460 SLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS 539 (632)
Q Consensus 460 ~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr 539 (632)
+. .+.++++.+.++|.+.|.++. +.|.| +. . ..+|.++++.+.+. .....+.+.+.++||.++
T Consensus 331 ~~---~~~~~~~~~g~~l~~~L~~~~-----~~~~v---~~-v-Rg~Gl~~~iel~~~----~~~~~i~~~l~e~Gi~v~ 393 (429)
T PRK06173 331 ES---PWQQNIQRIEAQLKQELAPAA-----EFDSV---AE-V-RVLGAIGVVEMKEP----VNMATLQPRFVEHGIWVR 393 (429)
T ss_pred hC---CHHHHHHHHHHHHHHHHHHhh-----cCCCe---ee-e-eccceEEEEEeCCc----ccHHHHHHHHHHCCeEEE
Confidence 54 347788888899999888662 12333 11 1 23678888888653 234566666667798875
Q ss_pred cCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 540 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 540 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
.. + .+||+.+.+..|.+||+.+++.|.+-|+.-
T Consensus 394 ~~----------------------------------------g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 394 PF----------------------------------------G-KLVYIMPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred ec----------------------------------------C-CEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 21 2 389999999999999999999999988753
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.9e-06 Score=89.56 Aligned_cols=309 Identities=10% Similarity=0.098 Sum_probs=164.3
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEE-EeccccchhhHHHHHHHH----hcCC-----EE
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-PFMSVKNLL-TVYDYESEAVEAMIRTSE----KRGA-----RV 242 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~gd~il-t~~d~~s~~v~~~~~~a~----~~G~-----~v 242 (632)
+.-+++.+..+.+-. ..++|+.++++|+....+-. -+..+.+|+ ....||......+..... +.|. .+
T Consensus 88 ~la~~l~~~~~~~~~-~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (425)
T PRK08088 88 ELCEKMNQKVPGDFA-KKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHV 166 (425)
T ss_pred HHHHHHHHhCCCCCC-CEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCc
Confidence 444445555543211 26889999888655443321 123334454 455677632222211000 0011 01
Q ss_pred EEEeccCCccccC----HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-
Q 006746 243 MSAEFSWPRLRIN----SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG- 312 (632)
Q Consensus 243 ~~v~~~~~~~~i~----~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~- 312 (632)
..+++..+...++ ++++++.+.+.. ....+..|.+.-+....|...| ++ +.++|+++|+++++|-++..
T Consensus 167 ~~~~~p~~~~~~~~~~~~~~l~~~l~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~ 245 (425)
T PRK08088 167 YRALYPCPLHGVSEDDAIASIERIFKNDA-APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGA 245 (425)
T ss_pred EEcCCCccccCccHHHHHHHHHHHHHhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 1111110000122 445777775311 1235677777777777788777 77 88999999999999997663
Q ss_pred CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccc
Q 006746 313 PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 313 g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
+.. +..++.....|| +.++-|.+|. -.-+|++..+++.++.+.....+.+ |
T Consensus 246 g~~g~~~~~~~~~~~pd--i~s~sK~l~~-G~rig~v~~~~~~~~~~~~~~~~~t----------~-------------- 298 (425)
T PRK08088 246 GRTGTLFAMEQMGVAAD--LTTFAKSIAG-GFPLAGVTGRAEVMDAIAPGGLGGT----------Y-------------- 298 (425)
T ss_pred CcCcchhHHhhcCCCCC--EEEEeccccC-CCcceeeEecHHHHhhcCCCCCCCC----------C--------------
Confidence 221 112222233566 5778897761 1236999988777665543211100 0
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 470 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~ 470 (632)
+.. ++ . . ..++..++....+.+.+++
T Consensus 299 ----------~~~----~~-------------~---~------------------------~a~~~~l~~~~~~~~~~~~ 324 (425)
T PRK08088 299 ----------AGN----PI-------------A---C------------------------AAALAVLKVFEQENLLQKA 324 (425)
T ss_pred ----------CcC----HH-------------H---H------------------------HHHHHHHHHHHhcCHHHHH
Confidence 000 00 0 0 1333444443345667777
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC----CccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR----EKIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G----~~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
+.+.+++.+.|.++.... |.+.- . ...|..+.+.+.+... .......+.+.+.++||.+..+
T Consensus 325 ~~~~~~~~~~l~~l~~~~----~~~~~--v---~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~----- 390 (425)
T PRK08088 325 NALGEKLKDGLLAIAEKH----PEIGD--V---RGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSC----- 390 (425)
T ss_pred HHHHHHHHHHHHHHHHhC----CCeEE--E---eccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecC-----
Confidence 777888888777763211 32211 1 1237777777742110 0111334444455578776421
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+||+++.+..+.+||+..++.|++.+.+
T Consensus 391 ---------------------------------~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 391 ---------------------------------GPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred ---------------------------------CCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 001258999999999999999999999988753
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-06 Score=92.56 Aligned_cols=345 Identities=11% Similarity=0.118 Sum_probs=186.5
Q ss_pred CCceEeecCC-----CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG-----IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMD 181 (632)
Q Consensus 107 ~~~vyLD~ag-----~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~ 181 (632)
++.-|||.+| .|.-.+.+++++.+.+... + + .+ +.. ..+...+.-+++++
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~----~--------~------~~--~~~-----~~~~~~~lae~L~~ 124 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKL----P--------F------SP--RRF-----TNETAIECAEKLTE 124 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhC----C--------C------cc--Ccc-----CCHHHHHHHHHHHH
Confidence 5678999875 3556677787766544321 0 0 00 000 12444567777888
Q ss_pred HcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHHHHH----hcC-----CEEEEEeccC-
Q 006746 182 FLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIRTSE----KRG-----ARVMSAEFSW- 249 (632)
Q Consensus 182 ~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~~a~----~~G-----~~v~~v~~~~- 249 (632)
++.... ..|.|++++++|...+..--. +....+|++ ...||......+. ... +.+ ..+..+|...
T Consensus 125 ~~p~~~--~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s-~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (459)
T PRK06082 125 IAGGEL--NRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAIS-VGGEACFRQGMGPLMAGVERIPPAVS 201 (459)
T ss_pred hCCCCC--CEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHh-hcCCcccccCCCCCCCCCEEeCCCcc
Confidence 875321 279999999999887654321 222345654 4456653333321 110 000 1122333210
Q ss_pred ---Ccccc------CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 250 ---PRLRI------NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 250 ---~~~~i------~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
+-... +.+.+++.|... ..+..|++--+....+...| ++ +.++|+++|+++++|-+|.+ |..
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~i~~~----~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRt 277 (459)
T PRK06082 202 YRGAFPDADGSDVHYADYLEYVIEKE----GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRT 277 (459)
T ss_pred cccccCChhHHHHHHHHHHHHHHhcC----CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 00001 124566666531 24566777666555333455 66 78899999999999998764 321
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
+-....-...||+++ +=|.+|..-.-+|++.++++....... .+.
T Consensus 278 G~~fa~e~~gv~PDiv~--~gKgl~gG~~P~~av~~~~~i~~~~~~-~~~------------------------------ 324 (459)
T PRK06082 278 GEWFTHQAYGIEPDILC--IGKGLGGGLVPIAAMITKDKYNTAAQI-SLG------------------------------ 324 (459)
T ss_pred chhhHhHhhCCCCCEEE--ecccccCCCCcceEEEEcHHHHhhccC-CCC------------------------------
Confidence 101111223699887 568555210016888888765422210 000
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.+| |. | |.....+. .+.|+.+.+. .+.+|++.+
T Consensus 325 ------~~T--~~----------g--npl~~aaa------------------------~a~L~~l~~~---~l~~~~~~~ 357 (459)
T PRK06082 325 ------HYT--HE----------K--SPLGCAAA------------------------LATIEVIEQE---GLLEKVKAD 357 (459)
T ss_pred ------CCC--CC----------c--CHHHHHHH------------------------HHHHHHHHhc---CHHHHHHHH
Confidence 000 00 0 00001111 1567766543 467889999
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCcc-C---HHHHHHHHHhCCcEEccCccCChHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI-E---PVLVQKLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i-~---~~~V~kla~~~gI~lr~G~~c~~~~~ 549 (632)
.++|.+.|.++.-.. |.+ +. -.-+|.++++.+.+.....- + ...+...+-++||.++.
T Consensus 358 g~~l~~~L~~l~~~~----~~i---~~--vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~--------- 419 (459)
T PRK06082 358 SQFMRERLLEMKAKY----PLI---GD--VRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKV--------- 419 (459)
T ss_pred HHHHHHHHHHHHhhC----CCe---ee--eeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEe---------
Confidence 999999998873111 222 11 02357777777753211110 1 12333444456776642
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+..+||+++.+..|.+||+.+++.+.+.|..
T Consensus 420 -------------------------------~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~ 451 (459)
T PRK06082 420 -------------------------------SQGNVIQLSPPLIITREELTQALAILEEAIAK 451 (459)
T ss_pred -------------------------------cCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 02258999999999999999999999988765
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-05 Score=89.64 Aligned_cols=356 Identities=13% Similarity=0.113 Sum_probs=190.6
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|+|..++ |--.+.+++++.+.+... + |+. +.. ....+...+.-++++
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~----~--~~~-----------~~~------~~~~~~~~~lAe~L~ 104 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKEL----A--YYH-----------TYV------GHGTEASITLSKRII 104 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhc----C--ccc-----------ccc------ccCCHHHHHHHHHHH
Confidence 67889998866 555677777766544321 0 000 000 001233445666677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEEE-eccccchhhHHHH-----HHHHhcC---CEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLLT-VYDYESEAVEAMI-----RTSEKRG---ARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~ilt-~~d~~s~~v~~~~-----~~a~~~G---~~v~~ 244 (632)
+++..+ -..|.|+.|+|+|+..+++--. + .+++ +|+. ...||....-.+. ......| ..+..
T Consensus 105 ~~~p~~--~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~ 182 (461)
T PRK07482 105 DRAPAG--MSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLH 182 (461)
T ss_pred HhCCCC--cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEE
Confidence 766422 1268999999999997665421 1 1233 4664 4567763322211 0001111 11223
Q ss_pred EeccCC-c----c-------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-----HHHHHhhCCcEEEEe
Q 006746 245 AEFSWP-R----L-------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-----WMRIAQENDWHILID 307 (632)
Q Consensus 245 v~~~~~-~----~-------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-----i~~~a~~~g~~vlvD 307 (632)
++.... . + .-+.+.+++.|.... ...+..|++.-+....|.+.|-+ +.++|+++|+++|+|
T Consensus 183 ~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~D 260 (461)
T PRK07482 183 TEAPHYYRRADAGMSEEQFSAYCADELEELILAEG--PDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIAD 260 (461)
T ss_pred cCCCccccccccCCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 322100 0 0 013466777775321 23466677766777778886533 457899999999999
Q ss_pred ccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCC-CCceeecccccccccccccCC
Q 006746 308 ACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 308 aaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~-gG~v~~~~~~~~~~~~~~~~~ 383 (632)
-+|.+ |.. +.-.+.-...||+++++ |.+|..-.-+|+++++++..+.+..... .|.+ +
T Consensus 261 EV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~---------~------- 322 (461)
T PRK07482 261 EVVTGFGRLGSMFGSDHYGIEPDLITVA--KGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAI---------G------- 322 (461)
T ss_pred ccccCCCcCcchhhHHhcCCCCCEEEEc--cccccCccccceeeecHHHHHHHhcccccCCcc---------c-------
Confidence 98764 321 11112223479999974 8554210126888888876554432100 0000 0
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 463 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl 463 (632)
..+|-. -.+++ ..+. .+.|+.+.+
T Consensus 323 ---------------h~~T~~-gnpl~-------------~Aaa------------------------~a~L~~~~~--- 346 (461)
T PRK07482 323 ---------------HGWTYS-GHPIC-------------AAAA------------------------LANLDILER--- 346 (461)
T ss_pred ---------------cCCCCC-cCHHH-------------HHHH------------------------HHHHHHHHh---
Confidence 011100 00111 1111 156666654
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCC--CCccCH-----HHHHHHHHhCC
Q 006746 464 TMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWK--REKIEP-----VLVQKLADREN 535 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~--G~~i~~-----~~V~kla~~~g 535 (632)
+.+.++++.+.++|.+.|.++.-.. |.| .| .-+|.++.+.+.+.. .+..++ ..+.+.+.++|
T Consensus 347 ~~l~~~~~~~g~~l~~~L~~l~~~~----~~v~~v------rG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~G 416 (461)
T PRK07482 347 ENLVGNAAEVGAYFRARLRAAFGDH----PLVGEV------RGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERG 416 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC----CCEEEE------eeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCC
Confidence 3567788888888888887663211 322 12 235677777775311 111121 23444445577
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|.++.+ . ...+||+.+.+-.|.+||+++++.+.+.|+.
T Consensus 417 vl~~~~--------------------------------------~-~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 417 VIARAM--------------------------------------P-HGDILGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred cEEecC--------------------------------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 776421 0 1248999999999999999999999988864
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=8e-06 Score=91.01 Aligned_cols=354 Identities=14% Similarity=0.131 Sum_probs=190.7
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..++ |--.+.+++++.+.+... + .+ . . . + ..+...+.-+++.
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~-------~~------~-~-~---~---~~~~~~~lae~l~ 99 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTL----S-------YF------P-L-T---Q---SHEPAIKLAEKLN 99 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhc----C-------cc------c-c-c---c---CCHHHHHHHHHHH
Confidence 67889998544 555677777766543321 0 01 0 0 0 0 1133346677777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEEE-eccccchhhHHHHHHHH----hc--C---CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLLT-VYDYESEAVEAMIRTSE----KR--G---ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~ilt-~~d~~s~~v~~~~~~a~----~~--G---~~v~ 243 (632)
+++... ..|.|++++|+|...+++--. + ++|+ +|+. ...||......|. ... +. + ..+.
T Consensus 100 ~~~~~~---~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als-~~~~~~~~~~~~~~~~~~~ 175 (451)
T PRK07678 100 EWLGGE---YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALA-ATGQAQRKYKYEPLAPGFL 175 (451)
T ss_pred HhCCCC---CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhh-cCCCcccccccCCCCCCCE
Confidence 777542 269999999998887654321 1 1233 4654 4567763322221 100 00 0 1122
Q ss_pred EEeccCCcccc---------C---HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEE
Q 006746 244 SAEFSWPRLRI---------N---SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILI 306 (632)
Q Consensus 244 ~v~~~~~~~~i---------~---~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlv 306 (632)
.++.. ..... + .+.+++.|.... ...+..|.+--+....|...| ++ +.++|+++|+++|+
T Consensus 176 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~ 252 (451)
T PRK07678 176 HVPPP-DCYRMPGIESEDIYDLECVKEIDRVMTWEL--SETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLIS 252 (451)
T ss_pred EeCCC-ccccccccCChHHHHHHHHHHHHHHHHhcC--CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 33321 00011 1 233556665221 235677777667667888877 55 67889999999999
Q ss_pred eccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 307 DACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 307 Daaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
|-+|.+ |.. |--..--...||++++ =|.+|..--=+|++.+++++++.+.+....+. ++
T Consensus 253 DEV~tGfGRtG~~~~~~~~gv~PDivt~--gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~---------~~------- 314 (451)
T PRK07678 253 DEVICGFGRTGKAFGFMNYGVKPDIITM--AKGITSAYLPLSATAVKKEIYEAFKGKGEYEH---------FR------- 314 (451)
T ss_pred eehhhcCCcCchhHHHHhcCCCCCEEEe--ecccccCCcceeEEEEcHHHHHHHhccCcccc---------cc-------
Confidence 998753 321 1011112236999877 58554210018999999988765543210000 00
Q ss_pred CCCCccccchhhhhhhccccCCCc-cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~-~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
..+| |.+ +++. ..+ .+.|+.+.+.
T Consensus 315 ---------------h~~T--~~gnp~~~------------aaa-------------------------~a~l~~l~~~- 339 (451)
T PRK07678 315 ---------------HVNT--FGGNPAAC------------ALA-------------------------LKNLEIMENE- 339 (451)
T ss_pred ---------------cCCC--CCcCHHHH------------HHH-------------------------HHHHHHHHhC-
Confidence 0111 110 1110 111 2567766653
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCCC--ccCH---HHHHHHHHhCCc
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKRE--KIEP---VLVQKLADRENI 536 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G~--~i~~---~~V~kla~~~gI 536 (632)
.+.+|++.+..+|.+.|.++.... |.+ .+ .-+|.++.+.+.+.... ..+. ..+.+.+.++||
T Consensus 340 --~~~~~~~~~g~~l~~~l~~~~~~~----~~v~~v------rg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv 407 (451)
T PRK07678 340 --NLIERSAQLGELLLEQLKEELGEH----PLVGDI------RGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGL 407 (451)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhcC----CCEEEE------EeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCc
Confidence 467788888888888886542111 222 12 23577777777532111 1122 234444556788
Q ss_pred EEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 537 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 537 ~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+... .+. ...+..+||+++.+..|.+||+++++.+.+.|+
T Consensus 408 ~~~~~---g~~-------------------------------v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~ 448 (451)
T PRK07678 408 IIGKN---GDT-------------------------------VAGYNNVLTLSPPLVISSEEIAFIVGTLKTALE 448 (451)
T ss_pred EEeec---Ccc-------------------------------ccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 77521 000 001235899999999999999999999998875
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8e-06 Score=91.09 Aligned_cols=307 Identities=13% Similarity=0.173 Sum_probs=170.0
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHHH-----HhcCC-----
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRTS-----EKRGA----- 240 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~a-----~~~G~----- 240 (632)
.+.-+++++.+... ...|.|+.++|+|...+.+--....|+ +|+. ...||......+ ... .+.+.
T Consensus 99 ~~lae~L~~~~p~~--~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~ 175 (457)
T PRK05639 99 IRVAEKLAEISPIE--NPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGAT-SVAAFQSSQKRGFSPLMP 175 (457)
T ss_pred HHHHHHHHhhCCCC--cCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHH-HHcCCCcccccCCCCCCC
Confidence 45666777776432 137999999999988766543222344 4654 456776433222 111 11111
Q ss_pred EEEEEeccCCcc-------ccCH--------HHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhC
Q 006746 241 RVMSAEFSWPRL-------RINS--------EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQEN 300 (632)
Q Consensus 241 ~v~~v~~~~~~~-------~i~~--------~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~ 300 (632)
.+..+|...+.. .-+. +.+++.|.........+..|.+--+....|.+.| ++ +.++|+++
T Consensus 176 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~ 255 (457)
T PRK05639 176 NVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH 255 (457)
T ss_pred CceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 244555431100 0012 2344444221111235777777777777888776 33 56789999
Q ss_pred CcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccc
Q 006746 301 DWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWL 377 (632)
Q Consensus 301 g~~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~ 377 (632)
|+++++|-+|.+ |.. +-..+.-...||+++ +=|.+|. -.++|++..+++.++ ... |..
T Consensus 256 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~pi~av~~~~~i~~-~~~----~~~----------- 316 (457)
T PRK05639 256 GILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS-GMGLSGVIGRKELMD-LTS----GSA----------- 316 (457)
T ss_pred CCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC-CCcceeEEehHHHHh-hcC----CCc-----------
Confidence 999999998763 210 101111123799988 5685542 235899999888765 211 100
Q ss_pred ccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHH
Q 006746 378 TDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ 457 (632)
Q Consensus 378 ~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~ 457 (632)
.+|.. ..+++ ...+ .+.|+.
T Consensus 317 ----------------------~~T~~-g~p~~------------~aaa-------------------------~a~l~~ 336 (457)
T PRK05639 317 ----------------------LLTPA-ANPVI------------SAAA-------------------------EATLEI 336 (457)
T ss_pred ----------------------ccCCC-cCHHH------------HHHH-------------------------HHHHHH
Confidence 00000 00000 0111 156666
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCH---HHHHHHHHhC
Q 006746 458 VDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP---VLVQKLADRE 534 (632)
Q Consensus 458 ~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~---~~V~kla~~~ 534 (632)
+.+ +.+.++.+.+.++|++.|.++.... |.+ +. -.-+|-++.+.+.+..+.. ++ ..+.+.+.++
T Consensus 337 l~~---~~l~~~~~~~g~~l~~~L~~l~~~~----~~~---~~--VrG~Gl~~gve~~~~~~~~-~~~~~~~~~~~~~~~ 403 (457)
T PRK05639 337 IEE---ENLLKNALKVGEFIKKRLLEMKESF----EVI---GD--VRGKGLMIGVEIVKENGKP-DPELTGKICWRAFEL 403 (457)
T ss_pred HHH---ccHHHHHHHHHHHHHHHHHHHHHhC----CCE---Ee--eccceeEEEEEEecCCCCC-CHHHHHHHHHHHHhC
Confidence 654 4566788888999999998863211 322 11 0235666676664322211 11 2344444557
Q ss_pred CcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 535 NISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 535 gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
||.++.. +....+||+++.+..|.+||+.+++.+.+.|+.
T Consensus 404 Gv~~~~~--------------------------------------g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~ 443 (457)
T PRK05639 404 GLILPSY--------------------------------------GMFGNVIRITPPLVITKEIAEKGLEIMERAIKD 443 (457)
T ss_pred CeEEeec--------------------------------------CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 8877521 112359999999999999999999999998865
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.3e-06 Score=92.06 Aligned_cols=222 Identities=15% Similarity=0.164 Sum_probs=121.5
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+ .|.-.+.+++++.+.++.. + + .+. .++. ..+...+.-++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~----~--~------------~~~----~~~~-~~~~~~~lae~L~ 108 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQL----P--Y------------YNM----FFHT-THPAVIELSELLF 108 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhC----C--C------------eec----cccc-CCHHHHHHHHHHH
Confidence 5788999543 3455577777766544321 0 0 000 0011 1234456777788
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCCe-EEE-eccccchhhHHHHHHH-H-hc--C---CEEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVKN-LLT-VYDYESEAVEAMIRTS-E-KR--G---ARVMSA 245 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd~-ilt-~~d~~s~~v~~~~~~a-~-~~--G---~~v~~v 245 (632)
+++...-+ .+.|++++|+|...+.+... + ++++. |+. ...||......|.-.- . .+ + -.+..+
T Consensus 109 ~~~p~~~~--~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~ 186 (460)
T PRK12403 109 SLLPGHYS--HAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHI 186 (460)
T ss_pred HhCCCCcC--EEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEe
Confidence 88763322 69999999999998766542 1 22334 443 3456764333321100 0 00 0 012333
Q ss_pred eccCC--c-ccc--------CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecc
Q 006746 246 EFSWP--R-LRI--------NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 246 ~~~~~--~-~~i--------~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaa 309 (632)
|.... . ..+ +.+++++.+.+.. +..+..|++--+....|.+.| ++ +.++|+++|+++++|-+
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~--~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV 264 (460)
T PRK12403 187 DEPYWYANGGELTPAEFGRRAALQLEEKILELG--AENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEV 264 (460)
T ss_pred CCCcccccccCCChHHHHHHHHHHHHHHHHHhC--CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 32100 0 001 1245555554321 235667777777778899988 88 89999999999999998
Q ss_pred ccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 310 ALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 310 q~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
|.+ |.. |-..+.-...||+++ +=|.+|..-.-+|+++++++.++.+
T Consensus 265 ~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~~Piga~v~~~~i~~~~ 313 (460)
T PRK12403 265 IGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGYVPMGGLVLSKRIAEAL 313 (460)
T ss_pred ccCCCcCchhhhhhhcCCCCCeEE--EcccccccccceEEEEECHHHHHHH
Confidence 854 221 111111123689997 5685552101278888887766544
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.6e-06 Score=90.85 Aligned_cols=222 Identities=13% Similarity=0.135 Sum_probs=120.2
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.+... + .+ +.. ++ ...+...+.-++++
T Consensus 48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~----~-------~~-------~~~----~~-~~~~~~~~lae~L~ 104 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMREL----P-------YY-------NTF----FK-TTHPPAIELAAKLA 104 (456)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhc----C-------Cc-------ccc----cc-cCCHHHHHHHHHHH
Confidence 57889998654 555677787766544321 1 00 000 00 01244456677777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEEE-eccccchhhHHHHH-----HHHhcCC---EEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLLT-VYDYESEAVEAMIR-----TSEKRGA---RVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~ilt-~~d~~s~~v~~~~~-----~a~~~G~---~v~~ 244 (632)
+++...- ..|.|+.++|+|...+++.-. + ++++ +|+. ...||......+.- ..+..|. .+..
T Consensus 105 ~~~p~~~--~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~ 182 (456)
T PRK07480 105 EVAPPGF--NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVH 182 (456)
T ss_pred HhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCee
Confidence 7764321 279999999999887664321 1 1333 3654 44677643322110 0011111 1222
Q ss_pred EeccCCc---cccC--------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEec
Q 006746 245 AEFSWPR---LRIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDA 308 (632)
Q Consensus 245 v~~~~~~---~~i~--------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDa 308 (632)
++..... ...+ .+.+++.+.... ...+..|++--+....|...| ++ +.++|+++|+++++|-
T Consensus 183 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DE 260 (456)
T PRK07480 183 IDQPYWFGEGGDMTPEEFGLAAARQLEAKILELG--ADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADE 260 (456)
T ss_pred cCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 3221000 0001 245555554321 235677777777777899887 67 7889999999999999
Q ss_pred cccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 309 CALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 309 aq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+|.+ |.. |-..+.-...||++++ =|.+|..-.-+|+++++++.++.+
T Consensus 261 V~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~~i~~~~ 310 (456)
T PRK07480 261 VICGFGRTGEWFGSQHFGIKPDLMTI--AKGLTSGYIPMGAVGVGDRVAEVL 310 (456)
T ss_pred hhhCCCcCcchhhhhhcCCCCCeeee--ehhhccCCccceEEEEcHHHHHHH
Confidence 8753 321 1112222346898766 485542000179999998876544
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-06 Score=91.50 Aligned_cols=298 Identities=14% Similarity=0.173 Sum_probs=185.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCC-HHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTAN-RTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~n-aT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+...++.+.+|+|+|.+. .+||..+ +|-++ .+.+| ..+|.-|+++.-.|+..+.+ |+--|+.++...-
T Consensus 181 ~~~hkelE~l~A~f~g~e~---a~vF~mGf~TNs~--~~p~l-~~~gsLIiSDelNHaSi~~G----aRLSgAtiRVfkH 250 (519)
T KOG1357|consen 181 TEEHKELEELVARFLGVED---AIVFSMGFATNSM--NIPSL-LGKGSLIISDELNHASLITG----ARLSGATTRVFRH 250 (519)
T ss_pred HHHHHHHHHHHHHhcCCcc---eEEEecccccccc--Cccee-ecCCcceeeccccchheecc----ccccCceEEEEec
Confidence 4667789999999999963 6999876 22221 22222 45676677776555434433 5567999998876
Q ss_pred cCCccccCHHHHHHHHHh-------cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC-
Q 006746 248 SWPRLRINSEKLRKMVVS-------KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS- 318 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~-------~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~- 318 (632)
+ +.++|++.|.+ +|...-+.-++++-.....-|.+..+. ++++.|++.+++.+|.|++.|. |.+
T Consensus 251 N------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA-~g~t 323 (519)
T KOG1357|consen 251 N------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGA-MGAT 323 (519)
T ss_pred C------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccc-cCCC
Confidence 4 45566666553 222122445778888888999999999 9999999999999999998864 222
Q ss_pred -------CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 319 -------FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 319 -------ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
.++....+|.+.+.|-|-||. +-|.+--++..++.+..... ++ ++.
T Consensus 324 Grgvce~~g~d~~dvDImMGtftKSfga---~GGyiagsk~lid~lrt~s~--~~--------~ya-------------- 376 (519)
T KOG1357|consen 324 GRGVCEYFGVDPEDVDIMMGTFTKSFGA---AGGYIAGSKELIDYLRTPSP--SA--------LYA-------------- 376 (519)
T ss_pred CcceeeccCCCchhheeecceehhhccc---ccceecCcHHHHhhhccCCC--ce--------eec--------------
Confidence 334556789999999999994 44666667776655433211 11 000
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh----hCHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS----LGLTMIS 467 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~----~Gl~~I~ 467 (632)
| ..+.++ .+.. ..+++++.- -+...+.
T Consensus 377 ----------t-~~sppv--------------aqq~------------------------~ssl~~i~G~dgt~~g~~k~ 407 (519)
T KOG1357|consen 377 ----------T-SLSPPV--------------AQQI------------------------LTSVKHIMGEDGTNRGRQKI 407 (519)
T ss_pred ----------c-cCChHH--------------HHHH------------------------HHHHHhhcCCCcccHHHHHH
Confidence 0 000010 0111 144554431 1135566
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEE-ccCccCCh
Q 006746 468 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL-SYGSLHHI 546 (632)
Q Consensus 468 ~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~l-r~G~~c~~ 546 (632)
+|++.-+++++..|+++ | +.+||.++ +|++-.-+.... .-+....+++. .||.+ ..|+-|-+
T Consensus 408 ~~l~~ns~yfr~~l~~~------g---fivyG~~d----SpVvplll~~~~---k~~~f~r~~l~-~nigvVvvgfPatp 470 (519)
T KOG1357|consen 408 ERLAENSRYFRWELQKM------G---FIVYGNND----SPVVPLLLYGPA---KIVAFSREMLE-RNIGVVVVGFPATP 470 (519)
T ss_pred HHHHhhhHHHHHhhhcC------c---EEEecCCC----CCcceeeecCcc---cccHHHHHHHh-cCceEEEEeCCCch
Confidence 77788888999998887 4 78899864 455544444321 12333344554 45544 44544443
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
-. .+.+|+-+.--+|.||+|++++.+.+.=
T Consensus 471 l~----------------------------------e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 471 LL----------------------------------ESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred HH----------------------------------HhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 11 1356777778899999999999987653
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-06 Score=90.39 Aligned_cols=302 Identities=13% Similarity=0.119 Sum_probs=170.2
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-CC-----CCCC-eEE-EeccccchhhHHHHHHHH-----h--
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-PF-----MSVK-NLL-TVYDYESEAVEAMIRTSE-----K-- 237 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-~~-----~~gd-~il-t~~d~~s~~v~~~~~~a~-----~-- 237 (632)
.+.-+++++++... -..|.|+.++|+|.....+.- .+ .+|. +|+ ....||......+. ... +
T Consensus 91 ~~la~~l~~~~~~~--~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s-~~~~~~~~~~~ 167 (427)
T TIGR00508 91 IELCQKLVKMTPNA--LDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMS-VCDPENSMHSL 167 (427)
T ss_pred HHHHHHHHhhCCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhc-ccCCccccccc
Confidence 45666666776432 137999999999988766532 11 1233 455 56678864332221 100 0
Q ss_pred cC-C--EEEEEeccCCccc-------cCHHHHHHHHHhcCcCCCceeEEEEecc-CCCCcccc----chH-HHHHHhhCC
Q 006746 238 RG-A--RVMSAEFSWPRLR-------INSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARY----PYL-WMRIAQEND 301 (632)
Q Consensus 238 ~G-~--~v~~v~~~~~~~~-------i~~~~l~~~i~~~~~~~~~~~Lv~~~~~-sn~TG~~~----pl~-i~~~a~~~g 301 (632)
.+ . .+..++. |... -+.+++++.|... .+.+..|++..+ +...|... +++ +.++|+++|
T Consensus 168 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~ 242 (427)
T TIGR00508 168 YKGYLPEQIFAPA--PQNRFDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYD 242 (427)
T ss_pred ccccCCCCeEcCC--CCccccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 00 0 1112221 1111 1346677777642 134667777765 66666654 455 678999999
Q ss_pred cEEEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccc
Q 006746 302 WHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLT 378 (632)
Q Consensus 302 ~~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~ 378 (632)
+++++|-++.+ |.. +-..+.....||+++ +=|.+|..-.-++++.+++++++.+.....+ . +.
T Consensus 243 ~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~-~---------~~-- 308 (427)
T TIGR00508 243 ILLIADEIATGFGRTGKLFACEHAGVVPDILC--VGKALTGGYMTLSATVTTDKVAQTISSGEAG-C---------FM-- 308 (427)
T ss_pred CEEEEeccccCCCcCCccchhhhcCCCCCEEE--echhhhcCcccceEEEEcHHHHHHHhcCCCC-c---------cc--
Confidence 99999998743 221 101112234789887 4785542101257777777776555421000 0 00
Q ss_pred cccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHH
Q 006746 379 DEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV 458 (632)
Q Consensus 379 ~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~ 458 (632)
. .+| |.+ |.....+. .++|+++
T Consensus 309 ~--------------------~~T--~~g------------~p~~~aaa------------------------~a~l~~l 330 (427)
T TIGR00508 309 H--------------------GPT--FMG------------NPLACAVA------------------------EASLAIL 330 (427)
T ss_pred c--------------------CCC--CCc------------CHHHHHHH------------------------HHHHHHH
Confidence 0 001 000 00111111 2677777
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEE
Q 006746 459 DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL 538 (632)
Q Consensus 459 ~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~l 538 (632)
.+. .+.++++.+.++|.+.|+++.- .+.+ +. . .-+|.++.+.+.+. ..+..+.+.+.++||.+
T Consensus 331 ~~~---~~~~~~~~~~~~l~~~L~~l~~-----~~~i---~~-v-rg~G~~~~i~~~~~----~~~~~~~~~l~~~Gv~~ 393 (427)
T TIGR00508 331 LEG---EWQKQVSAIENQLKRELSPLRK-----NPVV---KD-V-RVLGAIGVVEMYKP----VNVEELQKKFVEQGVWI 393 (427)
T ss_pred HhC---CHHHHHHHHHHHHHHHHHHhhc-----CCCE---Ee-E-eccccEEEEEECCc----cCHHHHHHHHHHCCeEE
Confidence 654 3468999999999999988721 1222 11 1 23588888888642 23455666666678877
Q ss_pred ccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 539 SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 539 r~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.. + .++|+++.+..|.+||+++++.+.+.|.+
T Consensus 394 ~~~----------------------------------------~-~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 394 RPF----------------------------------------G-KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred Eec----------------------------------------C-CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 420 1 37999999999999999999999998754
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-05 Score=96.89 Aligned_cols=309 Identities=11% Similarity=0.079 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHh---hCCCCCCCeEE-EeccccchhhHHHHHHHH---hcCC---
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAE---SYPFMSVKNLL-TVYDYESEAVEAMIRTSE---KRGA--- 240 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~---sl~~~~gd~il-t~~d~~s~~v~~~~~~a~---~~G~--- 240 (632)
...+.-+++++++.-. -..+.|++++|+|...+++ .+ ....+|+ ....||......+.-... ..+.
T Consensus 625 ~~~elae~L~~~~p~~--~~~v~f~~SGsEA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~ 700 (972)
T PRK06149 625 AVAEFSERLAALAPDG--LDTVFLVNSGSEANDLAIRLAWAA--SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALET 700 (972)
T ss_pred HHHHHHHHHHHhCCCC--cCEEEEeCCchHHHHHHHHHHHHh--cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCC
Confidence 3446677777777321 1279999999999998766 44 2233455 455788543322110000 0000
Q ss_pred ---EEEEEeccCC-cccc---C-----HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcE
Q 006746 241 ---RVMSAEFSWP-RLRI---N-----SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWH 303 (632)
Q Consensus 241 ---~v~~v~~~~~-~~~i---~-----~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~ 303 (632)
-+..++.... .+.. + .+++++.+.........+..|++--+....|.+.| ++ +.++|+++|++
T Consensus 701 ~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~l 780 (972)
T PRK06149 701 RPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGV 780 (972)
T ss_pred CCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1222322100 0001 1 24444444321111235677777777777899998 88 88999999999
Q ss_pred EEEeccccC-CCCCCC-C-CC--CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCC-CCCCceeeccccccccc
Q 006746 304 ILIDACALG-PKDMDS-F-GL--SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDN-TSSGMVSLLPAKKQLWL 377 (632)
Q Consensus 304 vlvDaaq~~-g~~m~~-l-dl--s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~-~~gG~v~~~~~~~~~~~ 377 (632)
+|+|-+|.+ |. +.. + .. -...||++++ =|-+|. -.-+|++.+++++++.+.+. .++++ +
T Consensus 781 lI~DEV~tGfGR-tG~~~~a~e~~gv~PDivt~--gK~lg~-G~Pl~av~~~~~i~~~~~~~~~~~sT----------~- 845 (972)
T PRK06149 781 CIADEVQVGYGR-LGHYFWGFEQQGVVPDIITM--AKGMGN-GHPLGAVITRREIAEALEAEGYFFSS----------T- 845 (972)
T ss_pred EEEEeehhcCCc-cCccchhhhhcCCCCCEEEe--cccccC-CeeeEEEEEcHHHHhhhccCCcccCC----------C-
Confidence 999998843 32 122 1 11 1236898855 585542 12379999998887655431 00000 0
Q ss_pred ccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHH
Q 006746 378 TDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ 457 (632)
Q Consensus 378 ~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~ 457 (632)
.| .+++. ..+ .+.|+.
T Consensus 846 ----------------------~g-----nP~~~------------aaa-------------------------la~L~~ 861 (972)
T PRK06149 846 ----------------------GG-----SPVSC------------RIG-------------------------MAVLDV 861 (972)
T ss_pred ----------------------CC-----CHHHH------------HHH-------------------------HHHHHH
Confidence 00 01110 111 156666
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCcc-C---HHHHHHHHHh
Q 006746 458 VDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI-E---PVLVQKLADR 533 (632)
Q Consensus 458 ~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i-~---~~~V~kla~~ 533 (632)
+++. .+.++.+.+.++|+++|.++.-.. |.|... .-+|-++.+.+.......- + ...+.+.+.+
T Consensus 862 i~~e---~l~~~~~~~G~~l~~~L~~l~~~~----~~i~~v-----rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~ 929 (972)
T PRK06149 862 LREE---KLQENARRVGDHLKARLEALADRH----PLIGAV-----HGMGLYLGVELVRDRQTLEPATEETAAICDRLLE 929 (972)
T ss_pred HHhc---CHHHHHHHHHHHHHHHHHHHHHhC----CCeEEE-----eecceEEEEEEecCcccCCCChHHHHHHHHHHHh
Confidence 6553 577888889999999998873111 323111 2356777777643111110 1 2234444455
Q ss_pred CCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 534 ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 534 ~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+||.++.. +....+||+.+.+..|.+||+.+++.|.+.|..
T Consensus 930 ~Gvl~~~~--------------------------------------g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 930 LGVIMQPT--------------------------------------GDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CCeEEeec--------------------------------------CCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 78887531 112358999999999999999999999998864
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-05 Score=89.35 Aligned_cols=314 Identities=15% Similarity=0.182 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEE-EeccccchhhHHHHHHHH----h
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLL-TVYDYESEAVEAMIRTSE----K 237 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~il-t~~d~~s~~v~~~~~~a~----~ 237 (632)
+...+.-+++.++++- ++-..|.|++++|+|...+.+--. + ++|+ +|+ ....||......| .... +
T Consensus 86 ~~~~~lae~L~~~~~~-~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~-s~~~~~~~~ 163 (449)
T PRK07481 86 PRAIELSYELIDMFAP-EGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGA-SVNGNTVFR 163 (449)
T ss_pred HHHHHHHHHHHHhcCC-CCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhh-ccCCCcccc
Confidence 3344667777777642 122369999999998887654321 1 1333 455 4556776332222 1100 0
Q ss_pred --cC---CEEEEEeccCCc----cccCHHH--------HHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHH
Q 006746 238 --RG---ARVMSAEFSWPR----LRINSEK--------LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMR 295 (632)
Q Consensus 238 --~G---~~v~~v~~~~~~----~~i~~~~--------l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~ 295 (632)
.+ ..+..++..... ...+.+. +++.|... .+..+..|++.-+....|.+.| ++ +.+
T Consensus 164 ~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~--~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~ 241 (449)
T PRK07481 164 RNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQ--GPDTIAAFIAEPVQGAGGVIVPPANFWPLVRE 241 (449)
T ss_pred cccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCcCCccCCHHHHHHHHH
Confidence 00 112223221000 0012333 34444311 1235777888888888898877 56 678
Q ss_pred HHhhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCC-CCceeeccc
Q 006746 296 IAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTS-SGMVSLLPA 371 (632)
Q Consensus 296 ~a~~~g~~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~-gG~v~~~~~ 371 (632)
+|+++|+++++|-+|.+ |.. |-....-...||+++++ |.+|..-.=+|++.++++.++.+.+... ++.
T Consensus 242 lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~------ 313 (449)
T PRK07481 242 VCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYVPLGATMVNARIADAFEANADFGGA------ 313 (449)
T ss_pred HHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccCCCcCceEEEEcHHHHHHHhccCccccc------
Confidence 89999999999998764 321 11112223479998874 8554200017999999887765543110 000
Q ss_pred ccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhh
Q 006746 372 KKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIE 451 (632)
Q Consensus 372 ~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 451 (632)
++ ..+|.. ..+++. ..+
T Consensus 314 ---~~----------------------h~~T~~-gnpl~~------------aaa------------------------- 330 (449)
T PRK07481 314 ---IM----------------------HGYTYS-GHPVAC------------AAA------------------------- 330 (449)
T ss_pred ---cc----------------------cCCCCC-CCHHHH------------HHH-------------------------
Confidence 00 011100 001110 011
Q ss_pred hhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCC--CCccC-----
Q 006746 452 CRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWK--REKIE----- 523 (632)
Q Consensus 452 ~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~--G~~i~----- 523 (632)
.+.|+.+.+ +++.++++.+.++|.+.|.++.... |.+ .+ .-+|.++.+.+.+.. .+..+
T Consensus 331 ~a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~----~~i~~v------rG~Glm~gi~l~~~~~~~~~~~~~~~~ 397 (449)
T PRK07481 331 LATLDIVVR---EDLPANAAKRGAYLLEGLQPLKERF----ELVGDV------RGKGLMLALDLVADKATREPIDPSKGY 397 (449)
T ss_pred HHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhcC----CCeEEE------eecceEEEEEecccccccCCCCchhHH
Confidence 145555543 5677888999999999998874211 322 11 235667777764321 11111
Q ss_pred HHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHH
Q 006746 524 PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLW 603 (632)
Q Consensus 524 ~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv 603 (632)
...+.+.+.++||.++.. + .++|+++.+..|.+||+.++
T Consensus 398 ~~~~~~~~~~~Gvl~~~~----------------------------------------g-~~i~l~Ppl~it~~eid~~~ 436 (449)
T PRK07481 398 ANAVADVARENGVLVRPS----------------------------------------G-TKIILSPPLVIQREDVDRIV 436 (449)
T ss_pred HHHHHHHHHhCCeEEEec----------------------------------------C-CEEEEECCCCCCHHHHHHHH
Confidence 123444445577776421 1 36899999999999999999
Q ss_pred HHHHHhhhh
Q 006746 604 AFVAQFLDA 612 (632)
Q Consensus 604 ~~l~~~l~~ 612 (632)
+.+.+.|+.
T Consensus 437 ~~l~~~l~~ 445 (449)
T PRK07481 437 DALDAGLSA 445 (449)
T ss_pred HHHHHHHHh
Confidence 999988754
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-05 Score=89.58 Aligned_cols=77 Identities=13% Similarity=0.247 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--C---CCCCCCCC
Q 006746 256 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--M---DSFGLSLV 324 (632)
Q Consensus 256 ~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m---~~ldls~~ 324 (632)
.+.++++|... ...+..|++.-+....|.+.| ++ +.++|+++|+++|+|-+|.+ |.. + ..+|+. .
T Consensus 238 l~~l~~~l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~-~ 313 (464)
T TIGR00699 238 LEEVEDLIKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLD-D 313 (464)
T ss_pred HHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCC-C
Confidence 45567777532 134677778778888899998 88 88999999999999998763 220 0 112332 3
Q ss_pred CCcEEEEccccccC
Q 006746 325 RPDFLICSFYQIFG 338 (632)
Q Consensus 325 ~~Df~~~S~hK~~G 338 (632)
.||++++ =|.+|
T Consensus 314 ~PDi~t~--gK~lg 325 (464)
T TIGR00699 314 PPDMVTF--SKKFQ 325 (464)
T ss_pred CCCEEEe--hhhhc
Confidence 4999766 58664
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-05 Score=96.83 Aligned_cols=349 Identities=15% Similarity=0.145 Sum_probs=190.7
Q ss_pred CCceEeecCC----CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG----IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (632)
Q Consensus 107 ~~~vyLD~ag----~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~ 182 (632)
+++.|||..+ .|--.+.+++++.+.+... |.++. | ..+...+.-+++++.
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l---------------------~~~~~--~---~~~~~~~lAe~L~~~ 675 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARL---------------------NTNTR--Y---LHDAIVAYAERLTAT 675 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhc---------------------CCcCC--c---CCHHHHHHHHHHHHh
Confidence 5788999853 4455566777765543221 01111 1 123344566667776
Q ss_pred cCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEE-EeccccchhhHHHHH----HHHhcC----CEEEEEeccCC-c
Q 006746 183 LNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLL-TVYDYESEAVEAMIR----TSEKRG----ARVMSAEFSWP-R 251 (632)
Q Consensus 183 l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~il-t~~d~~s~~v~~~~~----~a~~~G----~~v~~v~~~~~-~ 251 (632)
+... -..+.|++++|+|...+++--..-.|. +|+ ....||......+.- .-+..+ ..+..++.... .
T Consensus 676 ~p~~--~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~ 753 (1013)
T PRK06148 676 LPDG--LTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYR 753 (1013)
T ss_pred CCCC--cCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccc
Confidence 6422 126899999999988766543222344 465 455677643322210 000011 11222221100 0
Q ss_pred ccc---C-------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 252 LRI---N-------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 252 ~~i---~-------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
... + .+++++.|..-......+..|++--+....|.+.| ++ +.++|+++|+++|+|-+|.+ |..
T Consensus 754 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRt 833 (1013)
T PRK06148 754 GPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRV 833 (1013)
T ss_pred cCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCC
Confidence 000 1 13455555421111234677777777777888887 66 77899999999999998864 320
Q ss_pred ---CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCC-CCCceeecccccccccccccCCCCCCcccc
Q 006746 316 ---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNT-SSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 316 ---m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~-~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
+-........||++++ =|.+|. -.-+|++..+++.++.+.+.. ++++ |
T Consensus 834 G~~~~a~e~~gv~PDivt~--gK~lgg-G~Plgav~~~~ei~~~~~~g~~~~~T----------f--------------- 885 (1013)
T PRK06148 834 GSHWWAFETQGVVPDIVTM--GKPIGN-GHPMGAVVTTREIADSFDNGMEYFNT----------F--------------- 885 (1013)
T ss_pred CCcchhhhhcCCCcceeee--cccccC-CcceEEEEEcHHHHhhccCCCccccC----------C---------------
Confidence 1111112347999877 484442 123899999988776553210 0000 0
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGR 471 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~ 471 (632)
.|. +++. ..+ .+.|+.+.+ +.+.++++
T Consensus 886 --------~gn-----pla~------------aaa-------------------------~a~L~~i~~---e~l~~~~~ 912 (1013)
T PRK06148 886 --------GGN-----PVSC------------AIG-------------------------LAVLDIIED---EDLQRNAL 912 (1013)
T ss_pred --------CCC-----HHHH------------HHH-------------------------HHHHHHHhh---ccHHHHHH
Confidence 000 1110 111 155666654 45778888
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCCCcc-C---HHHHHHHHHhCCcEEccCccCCh
Q 006746 472 CLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKI-E---PVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 472 ~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G~~i-~---~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
.+.++|+++|.++.... |.+ .| .-+|.++.+.+...+...- + ...+.+.+.++||.++..
T Consensus 913 ~~G~~l~~~L~~l~~~~----~~i~~V------rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----- 977 (1013)
T PRK06148 913 EIGNYLLAGLRELQDRF----DIIGDV------RGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTE----- 977 (1013)
T ss_pred HHHHHHHHHHHHHHHhC----CCceEE------eeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEecc-----
Confidence 99999999998873211 222 12 1246666776643211111 1 123444444578887521
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+....+||+.+.+..|.+||+++++.+.+.|.+
T Consensus 978 ---------------------------------g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148 978 ---------------------------------GPHDNVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred ---------------------------------CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 012358999999999999999999999998864
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-05 Score=86.19 Aligned_cols=351 Identities=13% Similarity=0.157 Sum_probs=185.9
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..++ |--.+.+.+++.+.++.... .. .+ . ...+...+.-+++.
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~------~~----------~~---~-----~~~~~~~~la~~L~ 107 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIH------TG----------FN---V-----MMYEPYIELAEKLA 107 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccC------cc----------cc---c-----cccHHHHHHHHHHH
Confidence 67889997544 55667778776654432100 00 00 0 01233446666777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHHHHH-----hc--C---CEEEEEecc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIRTSE-----KR--G---ARVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~~a~-----~~--G---~~v~~v~~~ 248 (632)
+++..... ..|.|+.++|+|...+++--. +....+|+. ...||......| .... +. + ..+..+|..
T Consensus 108 ~~~p~~~~-~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~l-s~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (451)
T PRK06918 108 ALAPGSFD-KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTM-TMTSKVKPYKFGFGPFAPEVYKAPFP 185 (451)
T ss_pred HhCCCCCC-CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhh-hhcCCCccccccCCCCCCCcEEcCCC
Confidence 77643211 279999999998887655321 222234654 456776433332 1110 00 1 113333331
Q ss_pred C----CccccC-------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC
Q 006746 249 W----PRLRIN-------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 249 ~----~~~~i~-------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~ 312 (632)
. +.+... .+.+++.+.... ....+..|++--+....|...| ++ +.++|+++|++++.|-++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg 264 (451)
T PRK06918 186 YEYRRPEGLTEEQYDDFMIEEFKNFFISEV-APETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTG 264 (451)
T ss_pred ccccccccCchHHHHHHHHHHHHHHHHhhc-CCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 0 111000 123344332110 1234666666666666787665 45 67889999999999997653
Q ss_pred -CCCCCCCCCCCC--CCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 313 -PKDMDSFGLSLV--RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 313 -g~~m~~ldls~~--~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
+..=..+-+..+ .||++ ++=|.+|. ---+|+++.+++.++.+.+...+++ |
T Consensus 265 ~gr~g~~~a~~~~~v~pDi~--t~sK~l~~-G~pig~v~~~~~i~~~~~~~~~~~T----------~------------- 318 (451)
T PRK06918 265 FARTGKYFAIEHFDVVPDLI--TVSKSLGA-GVPISGVIGRKEIMDESAPGELGGT----------Y------------- 318 (451)
T ss_pred cCccCceehhHhcCCCCCEE--eeehhhcC-CCccEEEEEcHHHHhccCCCCcCcC----------C-------------
Confidence 221001112222 48844 67896551 2236999988877655533111100 0
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 469 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r 469 (632)
.+ .+++ ...+ .+.|+.+.+ +.+.+|
T Consensus 319 ----------~g-----~~l~------------~aaa-------------------------~a~l~~i~~---~~~~~~ 343 (451)
T PRK06918 319 ----------AG-----SPLG------------CAAA-------------------------LAVLDIIEK---ENLNDR 343 (451)
T ss_pred ----------Cc-----CHHH------------HHHH-------------------------HHHHHHHHH---CCHHHH
Confidence 00 0000 0011 145666644 346778
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCCCcc-CH---HHHHHHHHhCCcEEccCccC
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKI-EP---VLVQKLADRENISLSYGSLH 544 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G~~i-~~---~~V~kla~~~gI~lr~G~~c 544 (632)
++.+.++|.+.|.++.... |.+ .+ ...|.+..+.+........ +. ..+.+.+.++||.+..+.
T Consensus 344 ~~~~g~~l~~~l~~l~~~~----~~~~~v------rg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~-- 411 (451)
T PRK06918 344 AIELGKVVMNRFEEMKNKY----NCIGDV------RGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAG-- 411 (451)
T ss_pred HHHHHHHHHHHHHHHHhhC----CCceee------ccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecC--
Confidence 8888899988888873111 221 11 1246777666532111111 12 233334456888886430
Q ss_pred ChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 545 HIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
. ...+||+++.+..|.+||+.+++.|.++|..-
T Consensus 412 -----------------------------------~-~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 412 -----------------------------------T-YGNVIRVLMPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred -----------------------------------C-CCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 0 12589999999889999999999999998653
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-05 Score=88.14 Aligned_cols=352 Identities=14% Similarity=0.106 Sum_probs=191.8
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|||..++ |--.+.+.+++.+.++.. + .. .+.. ...+...+.-++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~----~----~~---------~~~~-------~~~~~~~~lAe~L~ 107 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTL----E----HA---------MLAG-------CTHEPAIELAERLA 107 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhc----C----Cc---------cccc-------cCCHHHHHHHHHHH
Confidence 57889998644 667778888776544321 0 00 0000 01133345666677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CC-----CCC-CeEE-EeccccchhhHHHHHH---HHhcC-----CEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PF-----MSV-KNLL-TVYDYESEAVEAMIRT---SEKRG-----ARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~-----~~g-d~il-t~~d~~s~~v~~~~~~---a~~~G-----~~v~~ 244 (632)
+.++..- ..+.|+.++|+|...+.+-- .+ .+| .+|+ ....||....-.|.-. ..+.+ ..+..
T Consensus 108 ~~~p~~~--~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~ 185 (453)
T PRK06943 108 ALTGGTL--GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHV 185 (453)
T ss_pred HhCCCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEE
Confidence 7665321 26999999999888766542 11 123 3465 4457776432222100 00111 01233
Q ss_pred EeccCCcc----c-------cCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccch----H-HHHHHhhCCcEEEEe
Q 006746 245 AEFSWPRL----R-------INSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYPY----L-WMRIAQENDWHILID 307 (632)
Q Consensus 245 v~~~~~~~----~-------i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~pl----~-i~~~a~~~g~~vlvD 307 (632)
++.....+ . -+.+++++.|... ...+..|++.- +....|...|- + +-++|+++|+++++|
T Consensus 186 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~D 262 (453)
T PRK06943 186 VASPDARGARPGETAADVAARALADVRRLFAER---AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIAD 262 (453)
T ss_pred ECCCCccccccCCCHHHHHHHHHHHHHHHHHhC---CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEee
Confidence 43321100 0 1246677777632 23466666665 46677887652 2 457899999999999
Q ss_pred ccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCC
Q 006746 308 ACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC 384 (632)
Q Consensus 308 aaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~ 384 (632)
-+|.+ |.. |-..+.-...||+++++ |-+|..-.-+|++.+++++++.+.+....+. ++
T Consensus 263 EV~TG~GRtG~~fa~~~~gv~PDivt~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~---------~~-------- 323 (453)
T PRK06943 263 EIAVGCGRTGTFFACEQAGVWPDFLCLS--KGISGGYLPLSLVLSRDAIFAAFYDDDVTRG---------FL-------- 323 (453)
T ss_pred chhhCCCCCcchhHHHhCCCCCCeEeee--hhhccCcccceEEEEcHHHHHhhcccCccCC---------cc--------
Confidence 98764 321 11112223479999984 7433110128999999888765532100000 00
Q ss_pred CCCccccchhhhhhhccccCCC-ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH
Q 006746 385 ETEPEQTSKSKQEKVAATNTFS-GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 463 (632)
Q Consensus 385 ~~e~~~~~~~~~e~e~gt~~f~-~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl 463 (632)
..+| |. .+++. ..+ .+.|+.+++.
T Consensus 324 --------------~~~T--~~gnpl~~------------aaa-------------------------~a~L~~i~~~-- 348 (453)
T PRK06943 324 --------------HSHS--YTGNPLAC------------RAA-------------------------LATLDLFAED-- 348 (453)
T ss_pred --------------CCCC--CCCCHHHH------------HHH-------------------------HHHHHHHHhc--
Confidence 0111 11 01110 111 1566666653
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCcc--CHHHHHHHHHhCCcEEccC
Q 006746 464 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI--EPVLVQKLADRENISLSYG 541 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i--~~~~V~kla~~~gI~lr~G 541 (632)
.+.++++.+.++|.+.|.++.- .|.|. . . .-+|.++.+.+... .+.- -...+.+.+.++||.++.
T Consensus 349 -~l~~~~~~~G~~l~~~L~~l~~-----~~~v~---~-v-rG~Gl~~gvel~~~-~~~~~~~~~~i~~~~~~~Gll~~~- 415 (453)
T PRK06943 349 -DVLARNARKSARLRAALAPLAA-----HPQVR---H-L-RQRGTIFAFDVALD-GDAARTFSRRFFEAALERELLLRP- 415 (453)
T ss_pred -CHHHHHHHHHHHHHHHHHHHhc-----CCCEE---e-E-eccccEEEEEEccC-CCcchHHHHHHHHHHHHCCcEEEe-
Confidence 4567888888888888888731 13331 1 1 23677888877521 1110 022344445567777641
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhcc
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADF 614 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~f 614 (632)
.+ .++|+++.+-.|.+||+++++.|.+.|+.-+
T Consensus 416 ---------------------------------------~g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~ 448 (453)
T PRK06943 416 ---------------------------------------IG-TTVYLMPPYVLDDDEIAWLAERTRATLDATL 448 (453)
T ss_pred ---------------------------------------cC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 01 3799999999999999999999999987643
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-05 Score=84.95 Aligned_cols=318 Identities=13% Similarity=0.065 Sum_probs=190.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHH----HHHHhhCCCCCCC----eEEEec-cccchhhHHHHHHHHhcC
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAF----KLLAESYPFMSVK----NLLTVY-DYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al----~lv~~sl~~~~gd----~ilt~~-d~~s~~v~~~~~~a~~~G 239 (632)
.+++.+..+.+.++-|-+ .|.+.+|+-+.= -++++.|.-..|+ .+|++. -|-.| +. .|.--|
T Consensus 108 l~li~~Lq~~L~~ITG~D----avsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN--PA---SAam~G 178 (496)
T COG1003 108 LELIYELQEWLKEITGMD----AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN--PA---SAAMAG 178 (496)
T ss_pred HHHHHHHHHHHHHhcCCc----eeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC--hh---hHhhcC
Confidence 578888888899998886 578887754322 2455666433333 255554 34333 21 345579
Q ss_pred CEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccc-cchH-HHHHHhhCCcEEEEeccc---cCCC
Q 006746 240 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYL-WMRIAQENDWHILIDACA---LGPK 314 (632)
Q Consensus 240 ~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~-~pl~-i~~~a~~~g~~vlvDaaq---~~g~ 314 (632)
.+|+.|+.+ .+|.||+++|++++.+++ ..+.++.-|+ -|.- -+|. |+++.|+.|..|..|+|- .+|.
T Consensus 179 ~~VV~V~~~-~~G~VDlddLk~k~~~~~------AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~ 250 (496)
T COG1003 179 FKVVVVKCD-ENGNVDLDDLRAKAEDNL------AALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGL 250 (496)
T ss_pred ceEEEEecC-CCCCccHHHHHHHhccce------eEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhcc
Confidence 999999998 889999999999998654 5566666654 4554 5788 999999999999999974 3443
Q ss_pred CCCCCCCCCCCCcEEEEcccccc----CCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccc
Q 006746 315 DMDSFGLSLVRPDFLICSFYQIF----GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 315 ~m~~ldls~~~~Df~~~S~hK~~----G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
. .| -+++.|++=++.||.| |...+|.|-+-||..+..-|..+. . .-....|.. +. +.
T Consensus 251 ~-rP---Gd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~-~-----~~~~~~y~~-~~--------~~ 311 (496)
T COG1003 251 A-RP---GDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPV-V-----YHDVGEYRL-DY--------DG 311 (496)
T ss_pred c-cc---cccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCc-c-----cCCCccccc-cC--------CC
Confidence 1 23 3468899999999954 111348888999977655443211 0 000000000 00 00
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC---HHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG---LTMIS 467 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G---l~~I~ 467 (632)
. ... +-..+| .|...|.-.+.-++..+| +....
T Consensus 312 ~-~s~----g~~~a~---------------------------------------~Gs~~il~~a~~YI~~mG~~GL~~as 347 (496)
T COG1003 312 K-KSI----GVSAAP---------------------------------------YGSASILPIAWAYIRMMGADGLKQAS 347 (496)
T ss_pred C-ccc----eeeccc---------------------------------------cCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 0 000 000011 122223336777777664 66777
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEE-EccCCCCccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 468 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN-VFDWKREKIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 468 ~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFn-v~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
+..---+||+..+|+.- .++ .|.+...-.+--|++.. +....| |....|.|.+-++|++-=|=+|=
T Consensus 348 e~AvLNANYia~rL~~~-------y~~--~y~~~~~~~HE~ild~r~l~~~~G--v~~~DvAKrLlD~GfHaPT~~FP-- 414 (496)
T COG1003 348 EVAVLNANYIARRLKGY-------YPV--PYTGENRVAHECILDARPLKKETG--VRALDVAKRLLDYGFHAPTMYFP-- 414 (496)
T ss_pred HHHHHhHHHHHHHhhhc-------Ccc--ccCCCCcceeEEEeechHhHhhcC--CcHHHHHHHHHhcCCCCCcccCc--
Confidence 77777789999999863 121 35554211223344433 222233 78888887766677654322110
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
-.-.+.+=|=+----+.+++|||++++.++..+
T Consensus 415 ---------------------------------liV~~tLMIEPTEsEsk~eLDrf~dami~I~~E 447 (496)
T COG1003 415 ---------------------------------LIVAGTLMIEPTESESKEELDRFIDAMIAIREE 447 (496)
T ss_pred ---------------------------------cccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 001234455555667899999999999987665
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-05 Score=87.72 Aligned_cols=167 Identities=12% Similarity=0.088 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCCC----CCccE--EEeCCHHHHHHHHHhhCC-CCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFLNISE----NDYGM--VFTANRTSAFKLLAESYP-FMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l~a~~----~ey~v--vft~naT~al~lv~~sl~-~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.|++++.-.. .+..| +.+.+++.+..++...+- +.+||+|++.. .|+. ....++..|++++.+
T Consensus 95 ~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~-----y~~~~~~~g~~~~~v 169 (423)
T PLN02397 95 EFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGN-----HHNIFRDAGVPVRTY 169 (423)
T ss_pred HHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchh-----HHHHHHHcCCeEEEe
Confidence 67888888663221 01123 223344444433322211 35899977543 4432 234456789999999
Q ss_pred ecc-CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEeccc--cC--CC--
Q 006746 246 EFS-WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACA--LG--PK-- 314 (632)
Q Consensus 246 ~~~-~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq--~~--g~-- 314 (632)
+.. ..+..+|.+.+++.+.+.+ +++++++++..+|+||..++.+ | +++|+++|+++++|-+- +. +.
T Consensus 170 ~l~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~ 246 (423)
T PLN02397 170 RYYDPKTRGLDFDGLLEDLKAAP---DGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDA 246 (423)
T ss_pred ecccCcCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhh
Confidence 873 2235689998888876421 2468899999999999999877 5 56788999999999762 21 10
Q ss_pred CCCCC-CCCCCCC-cEEEEccccccCCCCCceEEEE
Q 006746 315 DMDSF-GLSLVRP-DFLICSFYQIFGENPSGFGCLF 348 (632)
Q Consensus 315 ~m~~l-dls~~~~-Df~~~S~hK~~G~~P~G~G~L~ 348 (632)
...++ .+...+. =+++.||-|.||.+---+|+++
T Consensus 247 ~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v 282 (423)
T PLN02397 247 DAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALS 282 (423)
T ss_pred hhHHHHHHHhcCCcEEEEEECcccCCCccccceEEE
Confidence 00011 1111111 2667799999994222347775
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=88.62 Aligned_cols=343 Identities=13% Similarity=0.124 Sum_probs=186.9
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..+ .|--.+.+.+++.+.+..... .. ++....+...+.-++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~------~~------------------~~~~~~~~~~~lae~L~ 93 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSH------VM------------------FGGLTHEPAIKLTRKLL 93 (422)
T ss_pred CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCC------cc------------------cCCcCCHHHHHHHHHHH
Confidence 6788999764 355567777776654432100 00 00001233446667777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCC-CeEE-EeccccchhhHHHHHHH----Hhc--C---CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSV-KNLL-TVYDYESEAVEAMIRTS----EKR--G---ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~g-d~il-t~~d~~s~~v~~~~~~a----~~~--G---~~v~ 243 (632)
+++... -..|.|+.++|+|+..+.+--. + +++ .+|+ ....||......+.-.- .+. + ..+.
T Consensus 94 ~~~p~~--~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 171 (422)
T PRK05630 94 NLTDNG--LDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQI 171 (422)
T ss_pred hhCCCC--cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCe
Confidence 775422 1279999999998886654311 1 123 3465 45577763322221000 000 0 1223
Q ss_pred EEeccCCccccCH-------HHHHHHHHhcCcCCCceeEEEEecc-CCCCccccc----hH-HHHHHhhCCcEEEEeccc
Q 006746 244 SAEFSWPRLRINS-------EKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYP----YL-WMRIAQENDWHILIDACA 310 (632)
Q Consensus 244 ~v~~~~~~~~i~~-------~~l~~~i~~~~~~~~~~~Lv~~~~~-sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq 310 (632)
.+|.. +....+. +.+++.|.+ .+..|++.-+ ....|...| ++ +.++|+++|+++++|-+|
T Consensus 172 ~~p~~-~~~~~~~~~~~~~~~~~~~~~~~------~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~ 244 (422)
T PRK05630 172 FAPAP-PVRGSSPQEISEYLRSLELLIDE------TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA 244 (422)
T ss_pred EcCCC-cccCCChHHHHHHHHHHHHHHhh------ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce
Confidence 33332 1101111 233343432 3456666653 666787654 33 567899999999999987
Q ss_pred cC-CCC--CCCCCCCCCCCcEEEEccccccCC-CCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCC
Q 006746 311 LG-PKD--MDSFGLSLVRPDFLICSFYQIFGE-NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 311 ~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~-~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
.+ |.. +-........||++++ =|.+|. .+ -+|++.+++++.+.+......|. ++.
T Consensus 245 tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~gG~~-p~~av~~~~~i~~~~~~~~~~~~---------~~h--------- 303 (422)
T PRK05630 245 TGFGRTGELFATLAAGVTPDIMCV--GKALTGGFM-SFAATLCTDKVAQLISTPNGGGA---------LMH--------- 303 (422)
T ss_pred eCCCcCchhhHHHhcCCCCCeeee--echhhcCcc-ccceeeccHHHHHHHhccCCCCc---------ccc---------
Confidence 54 321 1111223457899855 585531 11 26888888887665532110000 000
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
.+| |.+ |.....+. .++|+.+.+. ..
T Consensus 304 -------------~~T--~~g------------~Pla~aaa------------------------~aaL~~l~~~---~~ 329 (422)
T PRK05630 304 -------------GPT--FMA------------NPLACAVA------------------------HASLEIIETG---MW 329 (422)
T ss_pred -------------CCC--CcC------------CHHHHHHH------------------------HHHHHHHHhC---cH
Confidence 111 110 00111111 2667777654 34
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
.++++.+.++|.+.|..+.. .|.| +. . .-+|.++++.+.+. .....+.+.+.++||.++..
T Consensus 330 ~~~~~~~g~~l~~~L~~l~~-----~~~v---~~-v-Rg~Gl~~~ie~~~~----~~~~~~~~~~~~~Gl~~~~~----- 390 (422)
T PRK05630 330 RKQVKRIEAELIAGLSPLAH-----LPGV---AD-V-RVLGAIGVVEMEQP----VDMEEATQAAVDHGVWLRPF----- 390 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhc-----CCCe---ee-e-eccccEEEEEECCc----ccHHHHHHHHHHCCeEEEec-----
Confidence 56888888888888876621 1322 11 1 23688888888653 23445666666788887521
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ .+||+.+.+-.|.+||+.+++.|.+.|++
T Consensus 391 -----------------------------------g-~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 391 -----------------------------------G-RLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred -----------------------------------C-CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 2 48999999999999999999999988764
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-06 Score=90.34 Aligned_cols=270 Identities=16% Similarity=0.118 Sum_probs=164.1
Q ss_pred ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh
Q 006746 221 YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE 299 (632)
Q Consensus 221 ~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~ 299 (632)
.+-|| ++ ...+.--|++.+.++.+ .+..+..+.|+++|.++..+.--+=.++.+.-++.+-..=+++ +..+|++
T Consensus 189 Dqahs-sv---eka~~i~~VklR~l~td-~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~ 263 (511)
T KOG0628|consen 189 DQAHS-SV---EKACLIAGVKLRALPTD-ENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCRE 263 (511)
T ss_pred Ccccc-hH---HHhHhhcceeEEEeecc-cCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhh
Confidence 44554 34 34455678999999998 4778999999999987643221233344444544444445788 9999999
Q ss_pred CCcEEEEeccccCCC--------CCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccc
Q 006746 300 NDWHILIDACALGPK--------DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPA 371 (632)
Q Consensus 300 ~g~~vlvDaaq~~g~--------~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~ 371 (632)
+|+++.||||-++.. -|.-+ -.+|-+.+..|||+-. =--+..||||++.. +...+ .|+
T Consensus 264 ~glWLHVDAAYAGsa~iCpE~r~l~rGi----e~aDSfn~n~hK~~~v-nfDCs~lWvkd~~~--~~~~~---~vd---- 329 (511)
T KOG0628|consen 264 EGLWLHVDAAYAGSAFICPEFRYLMRGI----EYADSFNFNPHKWLLV-NFDCSPLWVKDGTK--LSRAF---NVD---- 329 (511)
T ss_pred cCEEEEeehhhccccccCHHHHHHhhcc----hhhccccCChhheeEE-eeeeecceeecCce--eeeee---ecC----
Confidence 999999999744311 01112 2468999999996543 23578899998742 21111 000
Q ss_pred ccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhh
Q 006746 372 KKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIE 451 (632)
Q Consensus 372 ~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 451 (632)
+.+..++ . ....++|-- ..+|.-..+
T Consensus 330 --p~yL~h~--------------~---~~~~~Dyrh-----------wqipl~rRf------------------------ 355 (511)
T KOG0628|consen 330 --PLYLKHA--------------Y---QGSAPDYRH-----------WQIPLGRRF------------------------ 355 (511)
T ss_pred --hHhhcch--------------h---hccCCCccc-----------cccccccch------------------------
Confidence 0000000 0 000000000 001111111
Q ss_pred hhHHHHHH---hhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHH
Q 006746 452 CRGLDQVD---SLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQ 528 (632)
Q Consensus 452 ~~aLd~~~---~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~ 528 (632)
++|+.+- ..|.+++++|+|.=.+. -+...++-+.. +.++|..+. .-+.|+|.+.+.+- +...+.+
T Consensus 356 -RSLKlWfv~R~~Gve~lq~~iR~h~~L-a~~fe~lv~~d----~~FE~~~~~----~lgLvcFRlk~~N~--~ne~Ll~ 423 (511)
T KOG0628|consen 356 -RSLKLWFVLRSYGVENLQNYIREHVRL-AKEFETLVRAD----PRFEIVNKR----ILGLVCFRLKGDNE--INEALLN 423 (511)
T ss_pred -hhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhhcC----Ccceeeccc----ccceeEEeecCCcH--HHHHHHH
Confidence 5677553 36999999988765542 33344444433 778887664 46899999998643 5666777
Q ss_pred HHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHH
Q 006746 529 KLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVA 607 (632)
Q Consensus 529 kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~ 607 (632)
++-...+|.+.... -.+.-++|... ...+|.+||+.-|..|.
T Consensus 424 ~in~~g~i~l~~~~-------------------------------------l~gk~vlRf~V~s~~t~~~di~~a~~~I~ 466 (511)
T KOG0628|consen 424 RLNSSGRIHLVPAS-------------------------------------LHGKFVLRFAVCSPLTNESDIDEAWKIIF 466 (511)
T ss_pred HHHhcCcEEEEEee-------------------------------------ecceEEEEEEecCCCCcHHHHHHHHHHHH
Confidence 77777777775221 11334889886 67899999999999998
Q ss_pred Hhhhh
Q 006746 608 QFLDA 612 (632)
Q Consensus 608 ~~l~~ 612 (632)
+..+.
T Consensus 467 ~~a~~ 471 (511)
T KOG0628|consen 467 EAADE 471 (511)
T ss_pred HHHHH
Confidence 77655
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.9e-05 Score=83.39 Aligned_cols=351 Identities=14% Similarity=0.172 Sum_probs=182.0
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..++ |--.+.+++++.+.+.... . .+.. ....+...+.-++++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~---~-----------------~~~~----~~~~~~~~~lae~L~ 92 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGL---P-----------------LHTL----DLTTPLKDAFIEALL 92 (442)
T ss_pred CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhcc---C-----------------cccc----ccCcHHHHHHHHHHH
Confidence 57889998544 5666778887765443210 0 0000 001233345566777
Q ss_pred HHcCCCCCCccEEE-eCCHHHHHHHHHhhC-CCCCCCeEE-EeccccchhhHHHHHHHH----hcCC-----EEEEEecc
Q 006746 181 DFLNISENDYGMVF-TANRTSAFKLLAESY-PFMSVKNLL-TVYDYESEAVEAMIRTSE----KRGA-----RVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvf-t~naT~al~lv~~sl-~~~~gd~il-t~~d~~s~~v~~~~~~a~----~~G~-----~v~~v~~~ 248 (632)
+++.-....+.++| ++++|+|...+++-- .+....+|+ +...||......+. ... +.+. .+..++..
T Consensus 93 ~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s-~t~~~~~~~~~~~~~~~~~~~~~~ 171 (442)
T TIGR00709 93 NIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALA-VTGNLFAKNAVGMLMPGVQFMPYP 171 (442)
T ss_pred HhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHh-hcCChhhhccCCCCCCCcEEeCCC
Confidence 77642111135555 589999988765432 122233465 45577763333321 111 1111 13333331
Q ss_pred CCcccc--------CH----HHHHHHHHhcCcCCCceeEEEEeccCCCCcccc-chH----HHHHHhhCCcEEEEecccc
Q 006746 249 WPRLRI--------NS----EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-PYL----WMRIAQENDWHILIDACAL 311 (632)
Q Consensus 249 ~~~~~i--------~~----~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~-pl~----i~~~a~~~g~~vlvDaaq~ 311 (632)
..... +. +.+++.+.........+..|++--+....|... |-+ +.++|+++|+++++|-+|.
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~t 250 (442)
T TIGR00709 172 -HEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQA 250 (442)
T ss_pred -ccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 11111 11 123334432100112345555555666667664 433 5678999999999999876
Q ss_pred C-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 312 G-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 312 ~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
+ |.. +-...--...||.+++ =|.+|. -.-+|++.++++ +..+.+...+
T Consensus 251 GfGRtG~~~a~~~~gv~PDiv~~--gK~l~~-G~Pigav~~~~~-~~~~~~~~~~------------------------- 301 (442)
T TIGR00709 251 GFGRSGTMFAFEHAGIEPDFVVM--SKAVGG-GLPLAVLLIAPE-FDAWQPAGHT------------------------- 301 (442)
T ss_pred CCCCCCchhHHHHcCCCCcEEEE--cccccC-CcccEEEEEchH-HhccCCCcCC-------------------------
Confidence 4 321 1111112347898884 684442 112788888876 3333211100
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
+| |.+ |.....+. .+.|+.+++. .+.+
T Consensus 302 ------------~T--~~g------------npla~aaa------------------------~a~L~~i~~~---~l~~ 328 (442)
T TIGR00709 302 ------------GT--FRG------------NQLAMVTG------------------------TEALNYWKDD---NLAQ 328 (442)
T ss_pred ------------CC--CCc------------CHHHHHHH------------------------HHHHHHHHhc---CHHH
Confidence 00 000 00001111 1566666543 4567
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc-----c--C---HHHHHHHHHhCCcEE
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-----I--E---PVLVQKLADRENISL 538 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~-----i--~---~~~V~kla~~~gI~l 538 (632)
+.+.+.++|.+.|.++.... |.| +. . .-+|.++++.+.+..... . + ...+.+.+-++||.+
T Consensus 329 ~~~~~g~~l~~~L~~l~~~~----~~v---~~-v-rG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~ 399 (442)
T TIGR00709 329 NAQERGERITSFLDDMIKEH----PCI---GN-V-RGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLL 399 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCe---ee-e-eccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEE
Confidence 88888999999998873211 322 11 1 235777777775421100 0 1 223444445678776
Q ss_pred ccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 539 SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 539 r~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+ .....+||+.+.+..|.+||+.+++.+.+.|..
T Consensus 400 ~~~--------------------------------------~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 400 ETG--------------------------------------GREGEVFRLLCPITIDQEECEEGISRFKQAVEE 435 (442)
T ss_pred eec--------------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 521 112359999999999999999999999998865
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-05 Score=84.64 Aligned_cols=354 Identities=15% Similarity=0.175 Sum_probs=186.3
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.+.... + ++ .. . + ..+...+.-+++.
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~---~-------~~-------~~--~--~---~~~~~~~la~~L~ 116 (464)
T PRK06938 61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADEL---P-------LH-------TL--D--L---TTPVKDQFVQDLF 116 (464)
T ss_pred CCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhh---c-------cc-------cc--c--c---CCHHHHHHHHHHH
Confidence 67889997443 5556778887765442110 0 00 00 0 0 1122223444555
Q ss_pred HHcCCCC-CCccEEEe-CCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHHHH----hc--C---CEEEEEec
Q 006746 181 DFLNISE-NDYGMVFT-ANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRTSE----KR--G---ARVMSAEF 247 (632)
Q Consensus 181 ~~l~a~~-~ey~vvft-~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~a~----~~--G---~~v~~v~~ 247 (632)
+++.-.- ....++|+ +++|+|...+++--.-.+|+ +|++ ...||......+ .... +. + -.+..+|+
T Consensus 117 ~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~al-s~t~~~~~~~~~~~~~~~~~~~~~ 195 (464)
T PRK06938 117 ASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGAL-SLMGNLGPKKPLGALLPGVQFLPY 195 (464)
T ss_pred HhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHH-hhcCCccccccCCCCCCCcEEeCC
Confidence 5543210 01246676 68999888765532111344 4664 456776333222 1110 00 0 12344554
Q ss_pred cCCc----c-------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc
Q 006746 248 SWPR----L-------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL 311 (632)
Q Consensus 248 ~~~~----~-------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~ 311 (632)
.... + ..+.+.+++.|.+.......+..|++--+....|.+.| ++ +-++|+++|+++|+|-+|.
T Consensus 196 p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~t 275 (464)
T PRK06938 196 PYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQS 275 (464)
T ss_pred CccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 2110 0 01246677777542111124666777667667788766 33 4578999999999999876
Q ss_pred C-CCC--CCCCCCCCCCCcEEEEccccccC-CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCC
Q 006746 312 G-PKD--MDSFGLSLVRPDFLICSFYQIFG-ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE 387 (632)
Q Consensus 312 ~-g~~--m~~ldls~~~~Df~~~S~hK~~G-~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e 387 (632)
+ |.. |-..+.-...||+++++ |.+| ..| +|+++.+++. +.+.+...+++ |
T Consensus 276 GfGRtG~~~a~e~~gv~PDiv~~g--KglggG~P--lsAv~~~~~~-~~~~~~~~~~T----------~----------- 329 (464)
T PRK06938 276 GFGRTGKMFAFEHAGIIPDVVVLS--KAIGGSLP--LAVVVYREWL-DTWQPGAHAGT----------F----------- 329 (464)
T ss_pred CCCcCcHHHHHHhcCCCCCEEEee--ccccCCCc--eEEEeehhHh-hccCCCCCCCC----------C-----------
Confidence 4 321 11111123479999985 7333 223 7888888763 33322111100 0
Q ss_pred ccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHH
Q 006746 388 PEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMIS 467 (632)
Q Consensus 388 ~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~ 467 (632)
.| .+++. ..+ .+.|+.+.+ +.+.
T Consensus 330 ------------~g-----npla~------------Aaa-------------------------~a~L~~l~~---~~l~ 352 (464)
T PRK06938 330 ------------RG-----NQMAM------------AAG-------------------------SATLRYIKE---HRLA 352 (464)
T ss_pred ------------Cc-----CHHHH------------HHH-------------------------HHHHHHHHH---hHHH
Confidence 00 01110 111 145555544 4567
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc-------cC---HHHHHHHHHhCCcE
Q 006746 468 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-------IE---PVLVQKLADRENIS 537 (632)
Q Consensus 468 ~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~-------i~---~~~V~kla~~~gI~ 537 (632)
+|++.+.++|.+.|.+|.-.. |.| +. -.-+|-++.+.+.+..+.. .+ ...+.+.+-++||.
T Consensus 353 ~~~~~~G~~l~~~L~~l~~~~----~~i---~~--VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 423 (464)
T PRK06938 353 EHAAAMGERLREHLRQLQRDY----PQL---GD--VRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLI 423 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCe---ee--eeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeE
Confidence 899999999999998873111 322 11 0235667777765322210 01 12233334457777
Q ss_pred EccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhcccc
Q 006746 538 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVE 616 (632)
Q Consensus 538 lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~f~~ 616 (632)
++.+ +....+||+.+.+..|.+||+.+++.+.+.|.. +|.
T Consensus 424 ~~~~--------------------------------------g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~-~~~ 463 (464)
T PRK06938 424 LELG--------------------------------------GRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAA-AVA 463 (464)
T ss_pred Eeec--------------------------------------CCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH-Hhc
Confidence 6521 001258999999999999999999999998864 443
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-05 Score=85.61 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=119.5
Q ss_pred HHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
..|+.+|+|+. .+|+ .||.|+++|.|+++++-.+ -.||+.+|+++-|... |-+.+.-+.|++++.+
T Consensus 125 ~frqa~A~Fm~~~r~~~v~fdP~--~~Vv~~G~T~ane~l~fcL-adpgdafLvPtPyY~g---fdrdl~~rTgveivpv 198 (471)
T KOG0256|consen 125 SFRQAVAEFMERARGNRVKFDPE--RVVVTNGATSANETLMFCL-ADPGDAFLVPTPYYPG---FDRDLRWRTGVEIVPV 198 (471)
T ss_pred HHHHHHHHHHHHHhCCCCccCcc--ceEEecccchhhHHHHHHh-cCCCceeeecCCCCCc---ccccceeccCceEEEE
Confidence 45666666653 2455 6999999999999999988 4799997766544331 2234445679999888
Q ss_pred eccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HH---HHHhhCCcEEEEeccccC---CC-C-
Q 006746 246 EFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WM---RIAQENDWHILIDACALG---PK-D- 315 (632)
Q Consensus 246 ~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~---~~a~~~g~~vlvDaaq~~---g~-~- 315 (632)
.... .+.+++.+.|+.++.+..+...+++=+.++-.||+-|+.++-+ +. ..|+++++++++|-.-++ +. .
T Consensus 199 ~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F 278 (471)
T KOG0256|consen 199 HCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEF 278 (471)
T ss_pred EeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCc
Confidence 7653 3457899999999887654456778889999999999999866 54 567889999999974222 11 0
Q ss_pred --CCC-CCCCCCCCc--EEEEccccccCCCCCceEEEEEeCCC
Q 006746 316 --MDS-FGLSLVRPD--FLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 316 --m~~-ldls~~~~D--f~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
+.. ...-...+| -++.|.-|=||.|.--+|++|-.++-
T Consensus 279 ~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~ 321 (471)
T KOG0256|consen 279 RSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNED 321 (471)
T ss_pred eEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChH
Confidence 000 000001233 57889999999743345888876653
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-05 Score=83.99 Aligned_cols=358 Identities=11% Similarity=0.104 Sum_probs=190.3
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..+ .|--.+.+++++.+.++... |... .. + ..+...+.-++++
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~------~~~~---------~~------~---~~~~~~~lae~L~ 83 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLA------YAHT---------SF------F---TTEPAEALADRLV 83 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhcc------Cccc---------cc------c---CCHHHHHHHHHHH
Confidence 6788999865 45666777877765443210 0000 00 0 1233345666777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEEE-eccccchhhHHHHHHH------HhcC---CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLLT-VYDYESEAVEAMIRTS------EKRG---ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~ilt-~~d~~s~~v~~~~~~a------~~~G---~~v~ 243 (632)
+++... -..|.|++++|+|...+++--. + ++++ +|++ ...||......+. .. +..+ ..+.
T Consensus 84 ~~~p~~--~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s-~s~~~~~~~~~~p~~~~~~ 160 (443)
T PRK07483 84 AAAPAG--LEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALA-IGGNAWRREPFAPLLIEAH 160 (443)
T ss_pred HhCCCC--CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhh-hcCCcccccccCCCCCCCE
Confidence 765322 1279999999998887654321 1 1333 4664 5577764332221 10 0001 1122
Q ss_pred EEeccCCcccc------------CHHHHHHHHHhcCcCCCceeEEEEeccCC-CCccccc----hH-HHHHHhhCCcEEE
Q 006746 244 SAEFSWPRLRI------------NSEKLRKMVVSKGKKKKQRGLFVFPLHSR-MTGARYP----YL-WMRIAQENDWHIL 305 (632)
Q Consensus 244 ~v~~~~~~~~i------------~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn-~TG~~~p----l~-i~~~a~~~g~~vl 305 (632)
.++........ ..+++++.+.... ...+..|++--+.- ..|...| ++ +.++|+++|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI 238 (443)
T PRK07483 161 HVSPCYAYREQRAGESDEAYGQRLADELEAKILELG--PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLI 238 (443)
T ss_pred EeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcC--CCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEE
Confidence 33321100000 1245666564211 13456666665553 4577776 55 6788999999999
Q ss_pred EeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccC
Q 006746 306 IDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 306 vDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
+|-+|.+ |.. +-....-...||+++++ |-+|..-.-+|++.+++++++.+.+.. +. +. +
T Consensus 239 ~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~--~~----------~~-h--- 300 (443)
T PRK07483 239 LDEVMCGMGRTGTLFACEEDGVAPDLVTIA--KGLGAGYQPIGAVLASDRIYDAIADGS--GF----------FQ-H--- 300 (443)
T ss_pred EecceeCcccCcHHHHHhhcCCCCCeeeeh--hhhccCccccEEEEEcHHHHHHHhcCC--Cc----------cc-c---
Confidence 9998774 321 11111123479988884 744421002899999988766553210 00 00 0
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
.+|.. -.+++. ..+ .+.|+.+++
T Consensus 301 -----------------~~T~~-gnpl~~------------aaa-------------------------~a~l~~i~~-- 323 (443)
T PRK07483 301 -----------------GHTYL-GHATAC------------AAA-------------------------LAVQRVIAE-- 323 (443)
T ss_pred -----------------CCCCC-CCHHHH------------HHH-------------------------HHHHHHHHh--
Confidence 01100 001110 111 256666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCC--CccC-----HHHHHHHHHhC
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADRE 534 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G--~~i~-----~~~V~kla~~~ 534 (632)
+.+.+|++.+.++|.+.|+++.... |.| .| .-+|.++.+.+.+..+ +..+ ...+.+.+-++
T Consensus 324 -~~l~~~~~~~g~~l~~~L~~l~~~~----~~i~~v------RG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (443)
T PRK07483 324 -DGLLANVRARGEQLRARLRERLGQH----PHVGDI------RGRGLFVGVELVADRATKAPFDPALKLHARIKREAMAR 392 (443)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhcC----CCeeeE------eecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHC
Confidence 4567888888888888887652111 322 11 1356777777653221 1111 13445555568
Q ss_pred CcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 535 NISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 535 gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
||.++....+ . ......+||+.+-+..|.+||+.+++.|.+.|..
T Consensus 393 Gll~~~~~~~---------------------------~------~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 393 GLMVYPMGGT---------------------------I------DGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437 (443)
T ss_pred CcEEEecCcc---------------------------c------cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 8887531000 0 0111258999999999999999999999998864
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-05 Score=87.06 Aligned_cols=351 Identities=10% Similarity=0.105 Sum_probs=190.7
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..+. |--.+.+.+++.+.+.... .. .+. +. ..+...+.-++|+
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~--------~~---------~~~------~~-~~~~~~~lae~L~ 109 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIA--------HS---------TLL------GL-ANVPSILLAEKLI 109 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCC--------Cc---------ccc------cc-CCHHHHHHHHHHH
Confidence 67889997653 6667778887765443210 00 000 00 1233346677777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCC-eEE-EeccccchhhHHHHHHHHh----c--C---CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVK-NLL-TVYDYESEAVEAMIRTSEK----R--G---ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd-~il-t~~d~~s~~v~~~~~~a~~----~--G---~~v~ 243 (632)
+++... -..+.|++++|+|...+++--. + .+|+ +|+ ....||......| .+... . + ..+.
T Consensus 110 ~~~p~~--~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~al-s~s~~~~~~~~~~~~~~~~~ 186 (460)
T PRK06916 110 EVVPEG--LKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAV-SVGAIDLFHQVYSSLLFEAI 186 (460)
T ss_pred HhCCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhH-hccCCcccccccCCCCCCCE
Confidence 776432 1379999999998887655321 1 2333 465 4456776433222 11100 0 0 1123
Q ss_pred EEeccC----Ccc-c------cCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccc-hH----HHHHHhhCCcEEEE
Q 006746 244 SAEFSW----PRL-R------INSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP-YL----WMRIAQENDWHILI 306 (632)
Q Consensus 244 ~v~~~~----~~~-~------i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~p-l~----i~~~a~~~g~~vlv 306 (632)
.+|... +.+ . .+.+.+++.|... ...+..|.+-- +....|...| -+ +.++|+++|+++++
T Consensus 187 ~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~ 263 (460)
T PRK06916 187 KMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEK---HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFIT 263 (460)
T ss_pred EeCCCcccccccCCChHHHHHHHHHHHHHHHHhC---CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEe
Confidence 333210 000 0 1245566667532 23456666655 4666787764 22 45679999999999
Q ss_pred eccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 307 DACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 307 Daaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
|-+|.+ |.. +--.+.-...||++++ =|-+|..-.-+|++.+++++++.+.+.... . ..++
T Consensus 264 DEV~TG~GRtG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~-~-------~~~~------- 326 (460)
T PRK06916 264 DEVATGFGRTGKMFACEHENVTPDIMTA--GKGLTGGYLPIAITVTTDEIYNAFYGDYEE-Q-------KTFF------- 326 (460)
T ss_pred echhhCCCcCchhhHHHhcCCCCCeeee--ehhhhcCccccceeeecHHHHHHhhccccc-c-------Cccc-------
Confidence 998764 321 1111122347998876 584442101289999998876544321100 0 0000
Q ss_pred CCCCccccchhhhhhhccccCCC-ccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 384 CETEPEQTSKSKQEKVAATNTFS-GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~-~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
..+| |. .+++ ...+ .+.|+.+.+.
T Consensus 327 ---------------~~~T--~~gnpl~------------~aaa-------------------------~a~l~~l~~~- 351 (460)
T PRK06916 327 ---------------HGHS--YTGNPLG------------CAVA-------------------------LANLELYEKT- 351 (460)
T ss_pred ---------------cCCC--CCCCHHH------------HHHH-------------------------HHHHHHHHhc-
Confidence 0111 11 0111 0111 2566666653
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC--CccC-----HHHHHHHHHhCC
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADREN 535 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G--~~i~-----~~~V~kla~~~g 535 (632)
.+.+|++.+.++|.+.|.+|.- . |.| +. -.-+|.++.+.+.+... +... ...+.+.+.++|
T Consensus 352 --~l~~~~~~~g~~l~~~l~~l~~-~----~~v---~~--vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~G 419 (460)
T PRK06916 352 --NLIEQVARKTEYVATQLEDLFA-L----KHV---GD--IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELG 419 (460)
T ss_pred --cHHHHHHHHHHHHHHHHHHhhc-C----CCe---EE--eecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCC
Confidence 4668899999999999988731 1 322 11 12356777776653211 1111 124445555677
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|.++. .+ .++|+.+.+..|.+||+.+++.+.+.|+.
T Consensus 420 vl~~~----------------------------------------~g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~ 455 (460)
T PRK06916 420 MLTRP----------------------------------------LG-NTIVFMPPLASTIDELDEMLRILYKAISD 455 (460)
T ss_pred eEEEe----------------------------------------cC-CEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 77641 01 48999999999999999999999998864
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-05 Score=86.17 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=118.4
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|+|+.+. |--.+.+.+++.+.+.... .| +.+ .+...+.-++|.
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~-----------~~------~~~----------~~~~~~lAe~l~ 149 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT-----------SF------GAP----------CLLENVLAEMVI 149 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC-----------CC------CCC----------CHHHHHHHHHHH
Confidence 57889998653 3445777877665443210 01 111 123334555666
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHHHH----------hcCC------EE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRTSE----------KRGA------RV 242 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~a~----------~~G~------~v 242 (632)
+.+.. -..|.|++++|+|...+.+--.--.|+ +|+. ...||. ...++..... ..|. .+
T Consensus 150 ~~~p~---~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 225 (474)
T PLN02482 150 DAVPS---VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHG-HADSFLVKAGSGVATLGLPDSPGVPKAATSAT 225 (474)
T ss_pred HhCCC---CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCC-CcchhhhhcCCCccccCCCCCCCCCCCCCCCe
Confidence 66532 127999999999988765432211344 4664 446775 2222211100 0010 11
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch----H-HHHHHhhCCcEEEEeccccCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY----L-WMRIAQENDWHILIDACALGPKDMD 317 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl----~-i~~~a~~~g~~vlvDaaq~~g~~m~ 317 (632)
..+|. -|++.+++.|... ...+..|++..+....|.+.|. + +.++|+++|+++++|-++.+ .-..
T Consensus 226 ~~~~~------nd~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tG-fR~g 295 (474)
T PLN02482 226 LTAPY------NDLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTG-FRIA 295 (474)
T ss_pred EEecC------CChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC-eecC
Confidence 11111 1578888888643 2356788888888888988874 3 67889999999999998753 1001
Q ss_pred CCC---CCCCCCcEEEEccccccCC-CCCceEEEEEeCCCccccC
Q 006746 318 SFG---LSLVRPDFLICSFYQIFGE-NPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 318 ~ld---ls~~~~Df~~~S~hK~~G~-~P~G~G~L~Vr~~~~~~L~ 358 (632)
... .-...||++++ =|.+|. .| +|++..+++.++.+.
T Consensus 296 ~~ga~~~~gv~PDi~t~--gK~lggG~P--igav~g~~ei~~~~~ 336 (474)
T PLN02482 296 YGGAQEYFGITPDLTTL--GKVIGGGLP--VGAYGGRREIMEMVA 336 (474)
T ss_pred cchHhHHhCCCCCEEEe--cchhhCCCc--eEEEEEcHHHHHhhc
Confidence 111 11236898654 685542 13 788888888876554
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00016 Score=80.50 Aligned_cols=358 Identities=12% Similarity=0.103 Sum_probs=188.5
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||+.+. |--.+.+.+++.+.+... + + ... +. ...+...+.-++++
T Consensus 29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~----~--~------------~~~-~~-----~~~~~~~~lae~L~ 84 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEV----S--F------------VYR-SQ-----FTSEPAEKLAKKLS 84 (447)
T ss_pred CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhC----c--C------------ccc-cc-----cCCHHHHHHHHHHH
Confidence 67889998644 555677888776544321 0 0 000 00 01234456777777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC------CCCCCC-eEEE-eccccchhhHHHHHHHHhcCC---------EEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY------PFMSVK-NLLT-VYDYESEAVEAMIRTSEKRGA---------RVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl------~~~~gd-~ilt-~~d~~s~~v~~~~~~a~~~G~---------~v~ 243 (632)
+++... ...+.|+.++|+|...+++-- .-.+|+ +|+. ...||......|. .....+. .+.
T Consensus 85 ~~~p~~--~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als-~~~~~~~~~~~~~~~~~~~ 161 (447)
T PRK06917 85 DLSPGD--LNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALS-MSGHPLRRQRFVSLLEDYP 161 (447)
T ss_pred HhCCCC--CCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHH-hcCCccccccCCCCCCCCe
Confidence 776432 236899999999888766532 111333 4654 4567764333332 1110000 112
Q ss_pred EEeccCCc----cc-------cCHHHHHHHHHhcCcCCCceeEEEEeccCC-CCccccc----hH-HHHHHhhCCcEEEE
Q 006746 244 SAEFSWPR----LR-------INSEKLRKMVVSKGKKKKQRGLFVFPLHSR-MTGARYP----YL-WMRIAQENDWHILI 306 (632)
Q Consensus 244 ~v~~~~~~----~~-------i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn-~TG~~~p----l~-i~~~a~~~g~~vlv 306 (632)
.++..... +. -+.+.+++.|+... ...+..|++.-+.. .-|...| ++ +.++|+++|+++++
T Consensus 162 ~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~ 239 (447)
T PRK06917 162 TISAPYCYRCPVQKVYPTCQLACATELETAIERIG--AEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIA 239 (447)
T ss_pred EeCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--CCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEE
Confidence 22211000 00 02355666665321 12456666655544 4456665 33 45779999999999
Q ss_pred eccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 307 DACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 307 Daaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
|-++.+ |.. +-....-...||++++ =|.+|..-.-+|++.++++.++.+.+.. +. ++
T Consensus 240 DEv~tGfGRtG~~~a~~~~gv~PDi~~~--gK~l~~G~~Pi~a~~~~~~i~~~~~~~~--~~---------~~------- 299 (447)
T PRK06917 240 DEVMTGLGRTGAMFAMEHWGVEPDIMTL--GKGLGAGYTPIAATVVSDRVMEPILRGS--RS---------IM------- 299 (447)
T ss_pred echhhCcCcccchhhHHhcCCCCCEEEe--eehhccCCcceEEEEEcHHHHHHHhccC--cc---------cc-------
Confidence 998763 210 1011112336898766 5855521001788888888765443210 00 00
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 463 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl 463 (632)
..+|..- .+++ ..+. .+.|+.+++.
T Consensus 300 ---------------~~~T~~g-npl~-------------~aaa------------------------~a~l~~l~~~-- 324 (447)
T PRK06917 300 ---------------SGHTLSA-NPLS-------------AATA------------------------LAVLEYMEKH-- 324 (447)
T ss_pred ---------------cccCCCC-CHHH-------------HHHH------------------------HHHHHHHHHC--
Confidence 0111000 0111 1111 2566666543
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCC--CCccC-----HHHHHHHHHhCC
Q 006746 464 TMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWK--REKIE-----PVLVQKLADREN 535 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~--G~~i~-----~~~V~kla~~~g 535 (632)
.+.+|++.+.++|++.|.++.-.. |.+ .+ .-+|.++.+.+.+.. .+... ...+.+.+.++|
T Consensus 325 -~l~~~~~~~g~~l~~~L~~l~~~~----~~i~~v------rG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 393 (447)
T PRK06917 325 -NLPEKAAEKGEYLIKGLQKVQQQS----TIIGDV------RGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNG 393 (447)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHhcC----CCEEEE------eecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCC
Confidence 467888889999999988874211 322 11 235677777764311 11111 223444455678
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|.++..... . ......+||+++.+..|.+||+.+++.+.+.|+.
T Consensus 394 vl~~~~~~~---------------------------~------~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 437 (447)
T PRK06917 394 LLLYPAVAG---------------------------Q------DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEE 437 (447)
T ss_pred cEEEecccc---------------------------c------CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 887532000 0 0112358999999999999999999999998865
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-06 Score=91.21 Aligned_cols=171 Identities=12% Similarity=0.129 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHcCC--CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 169 SGLESAMKKRIMDFLNI--SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a--~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.++.+..+++++++.|. .++ .+|..|.++.++|-....++ +.+||+|++..-+.-...+ +. +-.|..++.++
T Consensus 72 p~L~~aL~k~~se~~~~~~~~~-~eVlVT~GA~~ai~~~~~~l-~~~GDeVii~eP~fd~Y~~-~~---~maG~tpv~v~ 145 (420)
T KOG0257|consen 72 PQLRKALAKAYSEFYGGLLDPD-DEVLVTAGANEAISSALLGL-LNPGDEVIVFEPFFDCYIP-QV---VMAGGTPVFVP 145 (420)
T ss_pred hHHHHHHHHHHHHHhccccCCc-ccEEEecCchHHHHHHHHHH-cCCCCEEEEecCcchhhhh-HH---hhcCCcceeec
Confidence 36777888888888775 333 37999999999999888888 7899997654322221332 23 34688999998
Q ss_pred cc-------CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEecc-ccC--
Q 006746 247 FS-------WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDAC-ALG-- 312 (632)
Q Consensus 247 ~~-------~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaa-q~~-- 312 (632)
.. .++..+|.++++.+++++| +++++.--+|+||..++ |+ |+++|+++|++++.|-+ ...
T Consensus 146 ~~~~~g~~~s~~~~~D~~~le~~~t~kT------k~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~ 219 (420)
T KOG0257|consen 146 LKPKEGNVSSSDWTLDPEELESKITEKT------KAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVY 219 (420)
T ss_pred cccccccccCccccCChHHHHhhccCCc------cEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhh
Confidence 76 4567789999999999865 99999999999999997 66 88999999999999975 222
Q ss_pred -CCCCCCC-C-CCCCCCcEEEEccccccCCCCCceEEEEEeC
Q 006746 313 -PKDMDSF-G-LSLVRPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 313 -g~~m~~l-d-ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
|.++..+ . -..+..-.-+.|+-|.||+..--+|-++..+
T Consensus 220 d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~ 261 (420)
T KOG0257|consen 220 DGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPK 261 (420)
T ss_pred CCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechH
Confidence 3211221 0 1224456778999999995423357766633
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0001 Score=81.82 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc----chH-HHHHHhhCCcEEEEecccc-CCCC--CCCCCCCCCCCc
Q 006746 256 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYL-WMRIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPD 327 (632)
Q Consensus 256 ~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~----pl~-i~~~a~~~g~~vlvDaaq~-~g~~--m~~ldls~~~~D 327 (632)
.+++++.+... ..++..|++..+....|.+. .++ +.++|+++|+++++|-+|. +|.. +-..+.....||
T Consensus 205 l~~~~~~~~~~---~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PD 281 (431)
T TIGR03251 205 LRQARAAFAER---PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPD 281 (431)
T ss_pred HHHHHHHHHhC---CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCC
Confidence 34455566532 24678888888888889886 355 6788999999999999987 3431 101122234799
Q ss_pred EEEEccc
Q 006746 328 FLICSFY 334 (632)
Q Consensus 328 f~~~S~h 334 (632)
+++++=.
T Consensus 282 i~~~gK~ 288 (431)
T TIGR03251 282 IVAFGKK 288 (431)
T ss_pred EEEeccc
Confidence 9986533
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.6e-05 Score=83.75 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEEE-eccccchhhHHHHHHHH-----hc---CC
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLLT-VYDYESEAVEAMIRTSE-----KR---GA 240 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~ilt-~~d~~s~~v~~~~~~a~-----~~---G~ 240 (632)
...+.-++|.+.+++ + .|.|++++|+|...+.+--.--.|+ +|+. ...||......+..... +. |.
T Consensus 116 ~~~~lAe~l~~~~~~--~--~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~ 191 (453)
T PRK07046 116 DAAWVGEELARRFGL--P--YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQ 191 (453)
T ss_pred HHHHHHHHHHHHhCC--C--EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCC
Confidence 334566677777753 2 6999999999888765432211344 4664 44577522112211100 00 11
Q ss_pred ------EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecc
Q 006746 241 ------RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 241 ------~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaa 309 (632)
.+..++. -|.+.+++.+.. ..+..|++--+....|...| ++ +.++|+++|+++++|-+
T Consensus 192 ~~~~~~~~~~~~~------nd~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV 260 (453)
T PRK07046 192 VHDLTATTRVVEF------NDLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDET 260 (453)
T ss_pred CccccCceEeeCC------CCHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcc
Confidence 1111111 167888888842 24677777777777788877 56 77899999999999998
Q ss_pred cc----CCCCCCCCCCCCCCCcEEEEccccccC-CCCCceEEEEEeCCCccccC
Q 006746 310 AL----GPKDMDSFGLSLVRPDFLICSFYQIFG-ENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 310 q~----~g~~m~~ldls~~~~Df~~~S~hK~~G-~~P~G~G~L~Vr~~~~~~L~ 358 (632)
+. .|.-....+ ..||++++ =|.+| ..| +|++..+++.++.+.
T Consensus 261 ~tfr~g~Gg~~~~~g---v~PDi~t~--gK~lggG~P--i~av~g~~~i~~~~~ 307 (453)
T PRK07046 261 HTISSGPGGYTRAHG---LEPDFLVV--GKPIAGGVP--CAVYGFSAELAERAQ 307 (453)
T ss_pred ccCccCCcchhHHhC---CCccceee--hhhhcCCCc--ceeeeehHHHHHHHh
Confidence 75 221111233 36898875 58443 223 788899988876554
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0001 Score=81.72 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHHHHHh----------cCC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIRTSEK----------RGA 240 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~~a~~----------~G~ 240 (632)
.+.-+++.+.+. .-..+.|+.++|+|...+.+--. +....+|+ ....||.. ..+....... .|.
T Consensus 96 ~~la~~l~~~~p---~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~-t~~~~~~~~~~~~~~~~~~~~~~ 171 (428)
T PRK12389 96 IEFAKMLKEAIP---SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGH-SDLVLVAAGSGPSTLGTPDSAGV 171 (428)
T ss_pred HHHHHHHHHhCC---CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCC-hHHHHHhcCCcccccCCCCCCCC
Confidence 456666666653 12379999999999887665321 22233465 44567763 2222111100 010
Q ss_pred ------EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecc
Q 006746 241 ------RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 241 ------~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaa 309 (632)
.+..+|. -|.+.+++.|.... ..+..|++.-+....|.+.| ++ +.++|+++|+++++|-+
T Consensus 172 ~~~~~~~~~~~~~------~d~~~l~~~l~~~~---~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV 242 (428)
T PRK12389 172 PKSIAQEVITVPF------NDIEALKEALDKWG---DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEV 242 (428)
T ss_pred CCcccCceEEcCC------CCHHHHHHHHHhcC---CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 1111111 15788888886432 34677888778888899998 88 89999999999999998
Q ss_pred ccCC-CC-CCCCCCCCCCCcEEEEccccccCC-CCCceEEEEEeCCCccccC
Q 006746 310 ALGP-KD-MDSFGLSLVRPDFLICSFYQIFGE-NPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 310 q~~g-~~-m~~ldls~~~~Df~~~S~hK~~G~-~P~G~G~L~Vr~~~~~~L~ 358 (632)
|.+- .. +.....-...||++++ =|.+|. .| +|++..+++.++.+.
T Consensus 243 ~tG~Rt~~~~a~~~~gv~PDivt~--gK~lggG~P--i~av~~~~~i~~~~~ 290 (428)
T PRK12389 243 ITAFRFMYGGAQDLLGVEPDLTAL--GKIIGGGLP--IGAYGGRKDIMEQVA 290 (428)
T ss_pred ccccccCcchhhHHhCCCCCeeee--chhhcCCCc--eeEEeEHHHHHhhhc
Confidence 8742 10 0000111236898654 584441 12 788888888776553
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.8e-05 Score=82.64 Aligned_cols=351 Identities=15% Similarity=0.141 Sum_probs=189.6
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+.+++.+.+... + + .+.. + ...+...+.-+++.
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l----~--~------------~~~~-----~-~~~~~~~~lae~L~ 100 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQL----E--H------------VILA-----G-FSHEPVIELSERLV 100 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhc----C--C------------cccc-----c-cCCHHHHHHHHHHH
Confidence 67889998644 555677777766544321 0 0 0000 0 01233445666777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CC-----CCCC-eEE-EeccccchhhHHHHHHHH----hc--C---CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PF-----MSVK-NLL-TVYDYESEAVEAMIRTSE----KR--G---ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~-----~~gd-~il-t~~d~~s~~v~~~~~~a~----~~--G---~~v~ 243 (632)
+++... -..|.|++++|+|...+.+-- .+ .+++ +|+ ....||......+. ... +. + ..+.
T Consensus 101 ~~~p~~--~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s-~~~~~~~~~~~~p~~~~~~ 177 (466)
T PRK07030 101 KITPPG--LSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMS-VGDVALFTETYKPLLLDTI 177 (466)
T ss_pred HhCCCC--cCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHh-ccCCccccccCCccCCCCE
Confidence 766422 227999999999888765432 11 1233 465 45567763332221 100 00 0 1123
Q ss_pred EEeccCC----cc-------ccCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccc----hH-HHHHHhhCCcEEEE
Q 006746 244 SAEFSWP----RL-------RINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP----YL-WMRIAQENDWHILI 306 (632)
Q Consensus 244 ~v~~~~~----~~-------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~p----l~-i~~~a~~~g~~vlv 306 (632)
.+|.... .+ .-+.+++++.|... ...+..|++-- +....|.+.| ++ +.++|+++|+++++
T Consensus 178 ~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~---~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~ 254 (466)
T PRK07030 178 KVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEH---HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIH 254 (466)
T ss_pred EcCCCCccccccCCCHHHHHHHHHHHHHHHHHhC---CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3332210 00 01245567777632 23466666666 5666788776 33 56789999999999
Q ss_pred eccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCC-CCceeecccccccccccccC
Q 006746 307 DACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 307 Daaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~-gG~v~~~~~~~~~~~~~~~~ 382 (632)
|-+|.+ |.. |-..+.-...||+++++ |.+|..-.=+|++.+++++++.+.+... .|. ++
T Consensus 255 DEV~TGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~---------~~------ 317 (466)
T PRK07030 255 DEIAVGFGRTGTMFACEQAGIRPDFLCLS--KALTGGYLPLAAVLTTDTVYQAFYDDYPTLRA---------FL------ 317 (466)
T ss_pred eehhhCcCccccchHHHhcCCCCCEEeee--hhccCCcccceEEEecHHHHHHHhcccccccc---------cc------
Confidence 998764 321 11112223479999984 7443210027999999887654422100 000 00
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
..+| |.+ |.....+. .+.|+.+.+.
T Consensus 318 ----------------h~~T--~~g------------npla~aaa------------------------~a~L~~i~~~- 342 (466)
T PRK07030 318 ----------------HSHS--YTG------------NPLACAAA------------------------LATLDIFEQD- 342 (466)
T ss_pred ----------------cCCC--CCC------------CHHHHHHH------------------------HHHHHHHHhc-
Confidence 0111 110 11111111 1567777653
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC--cc--C---HHHHHHHHHhCC
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE--KI--E---PVLVQKLADREN 535 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~--~i--~---~~~V~kla~~~g 535 (632)
.+.+|.+.+.++|.+.|.++.. . |.|. . -.-+|.++.+.+.+.... .. + ...+.+.+.++|
T Consensus 343 --~l~~~~~~~G~~l~~~L~~l~~-~----~~v~---~--vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~G 410 (466)
T PRK07030 343 --NVIENNRALARRMAEATAHLAD-H----PHVA---E--VRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERG 410 (466)
T ss_pred --CHHHHHHHHHHHHHHHHHHHhc-C----CCEE---E--eEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCC
Confidence 4678899999999999988731 1 3221 1 023567777776532111 00 1 123434444567
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.++. .+ .+||+.+.+-.|.+||+.+++.+.+.|+.
T Consensus 411 vl~~~----------------------------------------~g-~~i~~~Ppl~it~~eid~~~~~l~~al~~ 446 (466)
T PRK07030 411 ALLRP----------------------------------------LG-SVVYFLPPYVITPEQIDFLAEVASEGIDI 446 (466)
T ss_pred eEEEe----------------------------------------cC-CEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 76641 12 48999999999999999999999998876
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00016 Score=80.72 Aligned_cols=350 Identities=16% Similarity=0.195 Sum_probs=181.7
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||..+. |--.+.+++++.+.+... .+ ++ +.. ...+...+.-+++.
T Consensus 56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~---~~-------~~-----~~~---------~~~~~~~~lAe~L~ 111 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSG---LP-------LH-----TLD---------LTTPLKDAFSEYLL 111 (459)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhh---cc-------cc-----ccc---------cCCHHHHHHHHHHH
Confidence 67889998554 556677787766543210 00 00 000 01233345666666
Q ss_pred HHcCCCCCCccEEE-eCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHHHH----Hhc-----CCEEEEEecc
Q 006746 181 DFLNISENDYGMVF-TANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIRTS----EKR-----GARVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvf-t~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~~a----~~~-----G~~v~~v~~~ 248 (632)
+.+......+.++| ++++|+|...+++--. +...++|+ ....||......|. .. .+. ...+..+|..
T Consensus 112 ~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als-~t~~~~~~~~~~~~~~~~~~~~~~ 190 (459)
T PRK06931 112 SLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALA-VTGNLSPKNAVNGLMPGVQFMPYP 190 (459)
T ss_pred HhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHh-hcCCcccccCCCCCCCCcEEeCCC
Confidence 76643211123544 5899998887655321 22233465 44578864333331 11 000 1123444432
Q ss_pred CCc----c---ccCHHHH----HHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC
Q 006746 249 WPR----L---RINSEKL----RKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 249 ~~~----~---~i~~~~l----~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~ 312 (632)
... . .-+.+.+ ++.+........++..|++--+....|...| ++ +-++|+++|+++++|-+|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tG 270 (459)
T PRK06931 191 HEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAG 270 (459)
T ss_pred ccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhc
Confidence 100 0 0112333 2333221011234666667556666788776 34 56789999999999998764
Q ss_pred -CCC--CCCCCCCCCCCcEEEEccccccC-CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 313 -PKD--MDSFGLSLVRPDFLICSFYQIFG-ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 313 -g~~--m~~ldls~~~~Df~~~S~hK~~G-~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
|.. |-....-...||+++++ |.+| ..| +|++..++.. +.+.+...+
T Consensus 271 fGRtG~~~a~~~~gv~PDivt~g--K~l~gG~P--i~av~~~~~~-~~~~~~~~~------------------------- 320 (459)
T PRK06931 271 FARTGKMFAFEHAGIEPDIIVMS--KAVGGGLP--LAVLGIKKEF-DAWQPGGHT------------------------- 320 (459)
T ss_pred CCcCchHHHhhhcCCCCCEEEec--ccccCCcc--eeeeeeHHHH-hhccCCCCC-------------------------
Confidence 310 11111223479998884 7333 224 6777776553 333221111
Q ss_pred cccchhhhhhhccccCCCc-cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMIS 467 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~-~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~ 467 (632)
+| |.+ +++. ..+ .+.|+.+.+. .+.
T Consensus 321 ------------~T--~~gnpla~------------aaa-------------------------la~L~~l~~~---~l~ 346 (459)
T PRK06931 321 ------------GT--FRGNQLAM------------ATG-------------------------LTTLKILKEE---NLA 346 (459)
T ss_pred ------------CC--CCCCHHHH------------HHH-------------------------HHHHHHHHhC---CHH
Confidence 11 000 1110 111 1556666543 467
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC-------ccCH---HHHHHHHHhCCcE
Q 006746 468 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE-------KIEP---VLVQKLADRENIS 537 (632)
Q Consensus 468 ~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~-------~i~~---~~V~kla~~~gI~ 537 (632)
+|++.+.++|.+.|.++.-.. |.| +. -.-+|.++.+.+.+.... ..+. ..+.+.+-++||.
T Consensus 347 ~~~~~~G~~l~~~L~~l~~~~----~~i---~~--vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 417 (459)
T PRK06931 347 QNAAERGEWLKAQLAELQKRY----PCI---GN--VRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLL 417 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCe---Ee--EecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcE
Confidence 888889999999998873111 322 11 023567777777432110 0011 2333444457777
Q ss_pred EccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 538 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 538 lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
++.+ +....++|+.+.+..|.+||+.+++.+.+.|..
T Consensus 418 ~~~~--------------------------------------~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 418 LERG--------------------------------------GRNGNVVRLLPPLLITQAECEEFIDRFEQALLA 454 (459)
T ss_pred Eeec--------------------------------------CCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence 6521 012358999999999999999999999998865
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=81.94 Aligned_cols=180 Identities=9% Similarity=0.069 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCC---CCCccEEEeCCHHHHHHHHHhhCC-C-----CCC-CeEE-EeccccchhhHHHHHH---HHhc
Q 006746 173 SAMKKRIMDFLNIS---ENDYGMVFTANRTSAFKLLAESYP-F-----MSV-KNLL-TVYDYESEAVEAMIRT---SEKR 238 (632)
Q Consensus 173 ~~~R~~ia~~l~a~---~~ey~vvft~naT~al~lv~~sl~-~-----~~g-d~il-t~~d~~s~~v~~~~~~---a~~~ 238 (632)
.+.-+++.+++... ++-..|.|+.++|+|...+.+.-. + +++ .+|+ ....||......|.-. ..+.
T Consensus 110 ~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~ 189 (472)
T PRK08742 110 VQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRR 189 (472)
T ss_pred HHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCccccc
Confidence 35556666666321 011269999999998887655321 1 123 3465 4457776433222110 0000
Q ss_pred C-----CEEEEEeccCCc----c-------ccCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccchH-----HHHH
Q 006746 239 G-----ARVMSAEFSWPR----L-------RINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYPYL-----WMRI 296 (632)
Q Consensus 239 G-----~~v~~v~~~~~~----~-------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~pl~-----i~~~ 296 (632)
+ ..+..+|..... + ..+.+.+++.|... ...+..|++-- +....|...|-+ +.++
T Consensus 190 ~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~l 266 (472)
T PRK08742 190 VYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQS---PGEICALILEPRLQCAGGMRMHHPAYLRRAREL 266 (472)
T ss_pred ccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhC---CCceEEEEEccccccCCCcccCCHHHHHHHHHH
Confidence 0 012333331000 0 01245666667532 23566666765 566778876533 4567
Q ss_pred HhhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 297 AQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 297 a~~~g~~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
|+++|+++++|-+|.+ |.. |-..+.....||+++++ |.+|..-.-+|++++++++++.+
T Consensus 267 c~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~g--Kgl~gG~~Plaav~~~~ei~~~~ 328 (472)
T PRK08742 267 CDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLS--KGLTGGFLPLSAVLATQQLYDAF 328 (472)
T ss_pred HHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEc--ccccCCCCCcceeeccHHHHHHh
Confidence 9999999999998774 321 11122223479999984 85542100179999998876544
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=81.39 Aligned_cols=102 Identities=15% Similarity=0.082 Sum_probs=67.3
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE--EEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHH
Q 006746 453 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV--KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKL 530 (632)
Q Consensus 453 ~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v--~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kl 530 (632)
+.|+.+.+ +.+.+|++.+.++|.+.|.++.-.. |.+ .+ ..+|.++.+.+.+.. ....+.+.
T Consensus 337 a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~----~~~~~~v------rg~G~~~~i~~~~~~----~~~~~~~~ 399 (443)
T PRK08297 337 RILEVIEE---DGLVENAARQGEYLLARLEELAAEF----PAVVSNV------RGRGLMCAFDLPTTA----DRDEVIRR 399 (443)
T ss_pred HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHC----CCcceee------eccceEEEEEecCHH----HHHHHHHH
Confidence 45555544 4567888888888888888763111 212 22 135778888875411 12334444
Q ss_pred HHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 531 ADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 531 a~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+.++||.+..+ +..++|+++.+..|.+||+.+++.|.+.|
T Consensus 400 l~~~Gvl~~~~----------------------------------------~~~~lr~~P~l~~t~~eid~~l~~l~~~l 439 (443)
T PRK08297 400 LWEEGVLVLPC----------------------------------------GERSIRFRPALTVTTEEIDAAIDALRRAL 439 (443)
T ss_pred HHHCCEEEecC----------------------------------------CCCeEEEECCccCCHHHHHHHHHHHHHHH
Confidence 44678877421 22479999999999999999999999887
Q ss_pred h
Q 006746 611 D 611 (632)
Q Consensus 611 ~ 611 (632)
+
T Consensus 440 ~ 440 (443)
T PRK08297 440 P 440 (443)
T ss_pred H
Confidence 5
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.9e-05 Score=78.80 Aligned_cols=168 Identities=15% Similarity=0.299 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHH--HHHHhh---------CCCCCCCe--EEEe---ccccchhhHHHHHHH
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAF--KLLAES---------YPFMSVKN--LLTV---YDYESEAVEAMIRTS 235 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al--~lv~~s---------l~~~~gd~--ilt~---~d~~s~~v~~~~~~a 235 (632)
+-++|+..++++|++++ .||...|.+-.| .++..+ -||...++ +|.+ ||-| -.++
T Consensus 71 ipe~r~l~a~llgv~~~--~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRH-------Fai~ 141 (425)
T PF12897_consen 71 IPEARELFAELLGVPPE--NVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRH-------FAIT 141 (425)
T ss_dssp -HHHHHHHHHHHTS-GG--GEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHH-------HHHH
T ss_pred hHHHHHHHHHHhCCCHH--HEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHH-------HHHH
Confidence 35899999999999987 566666655432 233333 26755554 4432 4432 2356
Q ss_pred HhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHh----hCCcEEEEeccc
Q 006746 236 EKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQ----ENDWHILIDACA 310 (632)
Q Consensus 236 ~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~----~~g~~vlvDaaq 310 (632)
+..|++...||.. ++| .|.+.+++++.++. .-.++.++|--||+||+.|+-+ .-++|. +.+-.++.|-|-
T Consensus 142 E~~Giemi~VpM~-~dG-PDmD~Ve~LV~~D~---svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY 216 (425)
T PF12897_consen 142 EHFGIEMIPVPMT-EDG-PDMDMVEELVAEDP---SVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAY 216 (425)
T ss_dssp HHCT-EEEEEEEE-TTE-E-HHHHHHHTHTST---TEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TT
T ss_pred HhhCcEEEecCCC-CCC-CCHHHHHHHHhcCC---ccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCc
Confidence 8899999999997 454 79999999886432 2358999999999999999988 556653 468889999764
Q ss_pred cCCCCCC--C----CCC-----CCCCCc--EEEEcccc-ccCCCCCceEEEEEeCCCcc
Q 006746 311 LGPKDMD--S----FGL-----SLVRPD--FLICSFYQ-IFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 311 ~~g~~m~--~----ldl-----s~~~~D--f~~~S~hK-~~G~~P~G~G~L~Vr~~~~~ 355 (632)
.+-+-.. + +|+ ..-+|| |+.+|.-| .|- ..|++++-.++.-++
T Consensus 217 ~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~--GaGva~~aaS~~Nl~ 273 (425)
T PF12897_consen 217 AVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFP--GAGVAFFAASEANLA 273 (425)
T ss_dssp TT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-T--TSS-EEEEE-HHHHH
T ss_pred eEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccC--CcceeeeecCHHHHH
Confidence 4422000 1 122 122445 77888899 454 347777776665443
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-05 Score=83.94 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCCC----CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 174 AMKKRIMDFLNISE----NDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 174 ~~R~~ia~~l~a~~----~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.+|++||++++-+. +..+|++|++.++|+++++.++- ++|.+||++. .|+ +.-..|+-.|.+|+...+=
T Consensus 107 ~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA-~p~aNILlPrPGfp-----~Y~~~a~~~~lEVR~ydlL 180 (447)
T KOG0259|consen 107 PARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA-NPGANILLPRPGFP-----LYDTRAIYSGLEVRYYDLL 180 (447)
T ss_pred HHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc-CCCCceecCCCCCc-----hHHHhhhhcCceeEeeccc
Confidence 79999999987543 12379999999999999999994 8999988764 444 3333467789999999773
Q ss_pred -CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecc
Q 006746 249 -WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDAC 309 (632)
Q Consensus 249 -~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaa 309 (632)
..+.++|++.++.+++++| ..+++---+|++|-.+..+ |++.|++.|+.|+-|-.
T Consensus 181 Pe~~weIDL~~veal~DENT------~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEV 240 (447)
T KOG0259|consen 181 PEKDWEIDLDGVEALADENT------VAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEV 240 (447)
T ss_pred CcccceechHHHHHhhccCe------eEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhh
Confidence 2456899999999999986 6677778899999999755 56778999999999974
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0018 Score=69.70 Aligned_cols=133 Identities=17% Similarity=0.271 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHcCCCC-CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 169 SGLESAMKKRIMDFLNISE-NDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~-~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+++..+++-....+++++ .+..|+.|++.|.|+..+.+-+ ..+||.|++. +.+.+ ++.. .+..|+++..|+
T Consensus 103 peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~-~N~gd~vlie~~ty~~-AL~s----~~a~gv~~ipv~ 176 (472)
T KOG0634|consen 103 PELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTL-INRGDHVLIEEYTYPS-ALQS----MEALGVKIIPVK 176 (472)
T ss_pred HHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHh-hcCCCceEEecccchH-HHHh----ccccCceEEecc
Confidence 3566666665554566654 4458999999999999999988 7889998765 45554 3433 466787776666
Q ss_pred ccCCccccCHHHHHHHHHhcCcC----CCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecc
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKK----KKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDAC 309 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~----~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaa 309 (632)
.+ ...+++|.|++.+.+.+.. .+..-|.++|--.|+||..++++ |.++||+++.+++.|-.
T Consensus 177 md--~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdp 245 (472)
T KOG0634|consen 177 MD--QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDP 245 (472)
T ss_pred cc--CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCc
Confidence 65 3348999999988764322 23556889999999999999987 67899999999999864
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00019 Score=78.51 Aligned_cols=204 Identities=14% Similarity=0.105 Sum_probs=125.0
Q ss_pred CCceEeec---CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc
Q 006746 107 SNHTCLDY---FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (632)
Q Consensus 107 ~~~vyLD~---ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l 183 (632)
++.||.|- ++++.++..|++++.. - |- .||+ ..-+.+..+.++++|
T Consensus 39 s~dV~IDLrSDTgT~apS~~m~aAM~~-G------------DD----------------~Y~g--dpSv~~Lee~vael~ 87 (467)
T TIGR02617 39 SEDVFIDLLTDSGTGAVTQSMQAAMMR-G------------DE----------------AYSG--SRSYYALAESVKNIF 87 (467)
T ss_pred CCCeEEECccCCCCCCCCHHHHHHHHc-C------------Cc----------------cccc--CchHHHHHHHHHHHh
Confidence 45667665 4455689999999764 1 10 0121 122347788999999
Q ss_pred CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEecc-----ccchhhHHHHHHHHhcCCEEEEEecc--------C-
Q 006746 184 NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYD-----YESEAVEAMIRTSEKRGARVMSAEFS--------W- 249 (632)
Q Consensus 184 ~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d-----~~s~~v~~~~~~a~~~G~~v~~v~~~--------~- 249 (632)
|-. .+++|..++.+-+++...+.-.+|+++..... |+. ....-...+.-.|+.++.++.+ .
T Consensus 88 G~E----~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~-~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~ 162 (467)
T TIGR02617 88 GYQ----YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNY-FFDTTQGHSQINGCTARNVYTKEAFDTGVRYD 162 (467)
T ss_pred CCc----eEEECCCCchHHHHHHHhhcccccccccccccccccceEE-EEecchHHHHHcCceeecccchhhcccccCCC
Confidence 985 47899999999998888774336776552221 111 1111122345578887776321 1
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCC-CccccchH-H---HHHHhhCCcEEEEeccccC-----------C
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRM-TGARYPYL-W---MRIAQENDWHILIDACALG-----------P 313 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~-TG~~~pl~-i---~~~a~~~g~~vlvDaaq~~-----------g 313 (632)
..|.+|+++|+++|.+... .++..+..+..+|. -|...|++ + .++|+++|+.+++|||=.+ +
T Consensus 163 fkG~~dl~~le~~I~~~g~--~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~ 240 (467)
T TIGR02617 163 FKGNFDLEGLERGIEEVGP--NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAE 240 (467)
T ss_pred CCCCcCHHHHHHHHhhcCC--CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchh
Confidence 3578999999999985311 12233333333343 57778887 4 4679999999999995322 1
Q ss_pred CCCCCCCCCC------CCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 314 KDMDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 314 ~~m~~ldls~------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
. ....+++ -.+|-+.+|+-|-+|. |-| |+|..+++
T Consensus 241 a--~~~si~eI~rE~~~~aDsvt~slsKglgA-pvG-g~Lag~d~ 281 (467)
T TIGR02617 241 Y--KNWSIEQITRETYKYADMLAMSAKKDAMV-PMG-GLLCFKDD 281 (467)
T ss_pred h--cCCCHHHHHHHhhccCCEEEEEcCCCCCC-ccc-ceEEecch
Confidence 1 1122221 3689999999998886 643 45555555
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0013 Score=72.88 Aligned_cols=207 Identities=13% Similarity=0.093 Sum_probs=107.5
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..+ .|--.+.+++++.+.++.. + .| .++ .....+.-+++.
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~----~-------~~------~~~----------~~~~~~la~~l~ 98 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDG----C-------NF------TRP----------SAIELDAAESFL 98 (431)
T ss_pred CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhC----c-------CC------CCC----------CHHHHHHHHHHH
Confidence 6788999854 3555667777766543321 0 01 111 122224566677
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCe-EEEe--ccccchhhHHHHHH-HHhcCCE----EEEEeccCCcc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKN-LLTV--YDYESEAVEAMIRT-SEKRGAR----VMSAEFSWPRL 252 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~-ilt~--~d~~s~~v~~~~~~-a~~~G~~----v~~v~~~~~~~ 252 (632)
+++... ..|.|+.++|+|...+.+.-..-.|+. |+.. ..+|+ ...|.... ....|.. .....+.
T Consensus 99 ~~~p~~---~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~-~~~~~~g~~~~~~~~~~~~~~~~~~~~---- 170 (431)
T PRK06209 99 ELIDGA---DMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFS-TDDWFIGTTPMSAGIPASVSALTVTFR---- 170 (431)
T ss_pred HhCCcc---ceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCcccc-ccccccccCCCCCCCChhHhccccccC----
Confidence 776321 269999999999887665321113444 5543 23332 01111000 0000100 0011111
Q ss_pred ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC---CCCCcE
Q 006746 253 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS---LVRPDF 328 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls---~~~~Df 328 (632)
.-|+++++++|.... ..+..|++..+....+-.-+++ +.++|+++|+++++|-++.+ ......... ...||+
T Consensus 171 ~~d~~~l~~~l~~~~---~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG-~~~~~~g~~~~~gv~PDi 246 (431)
T PRK06209 171 YNDIASLEALFEDHP---GRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITG-FRWHMRGAQKLYGIVPDL 246 (431)
T ss_pred CCCHHHHHHHHHhCC---CCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-CCcCcchhhHHhCCCcce
Confidence 126788998886421 2455666644433322233377 88999999999999998743 211111111 236887
Q ss_pred EEEccccccCCCCCceEEEEEeCCCcc
Q 006746 329 LICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
++ +=|.+|. -.-+|++..+++.++
T Consensus 247 ~t--~gK~lgg-G~p~~av~~~~~i~~ 270 (431)
T PRK06209 247 SC--FGKALGN-GFAVSALAGKREYME 270 (431)
T ss_pred ee--ehhhhcC-CcccEEEEEHHHHHh
Confidence 55 4686552 112677777776654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=79.02 Aligned_cols=183 Identities=10% Similarity=0.119 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC------CCCCC-eEEE-eccccchhhHHHH-----HHHH
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP------FMSVK-NLLT-VYDYESEAVEAMI-----RTSE 236 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~------~~~gd-~ilt-~~d~~s~~v~~~~-----~~a~ 236 (632)
+...+.-+++.+.++- .-..|.|+.++|+|+..+++-.. ..++. +|+. ...||......+. ...+
T Consensus 59 ~~~~~la~~L~~~~p~--~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~ 136 (339)
T PF00202_consen 59 PEAAELAEKLAELFPG--GLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRK 136 (339)
T ss_dssp HHHHHHHHHHHHHSST--TEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHT
T ss_pred cchhhhhhhhhhcccc--ccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccc
Confidence 4556777888888833 23479999999999998776543 23344 4654 4577753332221 0111
Q ss_pred hcC---CEEEEEeccCCcc----ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEE
Q 006746 237 KRG---ARVMSAEFSWPRL----RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHI 304 (632)
Q Consensus 237 ~~G---~~v~~v~~~~~~~----~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~v 304 (632)
..+ ..+..+|.+.+.. ....+++++.+.+.. .+.+..|++--+....|...| ++ +.++|+++|+++
T Consensus 137 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gill 214 (339)
T PF00202_consen 137 GFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALN--ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILL 214 (339)
T ss_dssp TTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EE
T ss_pred cccccccccccccCCccchhhhHHHHHHHHHHHHHhhc--CCcEEEEEEeccccccCccccccchhhehcccccccccce
Confidence 111 2456677642211 001222333333211 234677777777777788765 33 567899999999
Q ss_pred EEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 305 LIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 305 lvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
++|-+|.+ |.. +-..+.....||+++++ |.+|. -.-+|+++++++..+.+.+
T Consensus 215 I~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~g-G~p~sav~~~~~i~~~~~~ 269 (339)
T PF00202_consen 215 IADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGG-GLPISAVLGSEEIMEAFQP 269 (339)
T ss_dssp EEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGT-TSSEEEEEEEHHHHTTSCT
T ss_pred ecccccccccccCCccceecccccCcccccc--cchhh-hhhcccccccchhhccccc
Confidence 99998775 221 11112233579999998 95443 2458999999988766644
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=77.73 Aligned_cols=203 Identities=13% Similarity=0.102 Sum_probs=124.6
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHH-HcCCC-
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMD-FLNIS- 186 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~-~l~a~- 186 (632)
-+|-|-.|-.+.-++|.++......... +..|- ... |. ...++.+++ +||.+
T Consensus 34 GvY~de~Gk~pvl~aV~~Ae~~l~~~~~---~k~Yl------------~i~-----G~------~~f~~~~~~llFG~d~ 87 (396)
T COG1448 34 GVYKDEDGKTPVLRAVKKAEKRLLEQEK---TKNYL------------PIE-----GL------PEFLEAVQKLLFGADS 87 (396)
T ss_pred eeeeCCCCCcchhHHHHHHHHHhhcccc---ccccC------------CcC-----Cc------HHHHHHHHHHhcCCCc
Confidence 5799999999999999888665443210 11111 010 11 123333333 45643
Q ss_pred ----CCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEe---ccccchhhHHHHHHHHhcCCEEEEEec-cCCccccCHH
Q 006746 187 ----ENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTV---YDYESEAVEAMIRTSEKRGARVMSAEF-SWPRLRINSE 257 (632)
Q Consensus 187 ----~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~---~d~~s~~v~~~~~~a~~~G~~v~~v~~-~~~~~~i~~~ 257 (632)
++-..-+=|.++|.||++.++-+. +.+...|-++ ...|. .+-+..|.+|..-|. +.++..+|.+
T Consensus 88 ~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~-------~If~~aGl~v~~Y~Yyd~~~~~~df~ 160 (396)
T COG1448 88 PALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHK-------AIFEAAGLEVETYPYYDAETKGLDFD 160 (396)
T ss_pred HHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHH-------HHHHhcCCceeeeeccccccccccHH
Confidence 122223457799999999998874 2333344322 23332 123567999987775 4455568988
Q ss_pred HHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHH---HhhCCcEEEEecc-ccCCCCCCCCCC---------CC
Q 006746 258 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRI---AQENDWHILIDAC-ALGPKDMDSFGL---------SL 323 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~---a~~~g~~vlvDaa-q~~g~~m~~ldl---------s~ 323 (632)
.+...|.... .+.-++--.-+.|+||.-...+ |.++ .+++|++.++|-| |..+. -|+- +.
T Consensus 161 ~mla~L~~a~---~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~---GleeDa~~lR~~a~~ 234 (396)
T COG1448 161 GMLADLKTAP---EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFAD---GLEEDAYALRLFAEV 234 (396)
T ss_pred HHHHHHHhCC---CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhcc---chHHHHHHHHHHHHh
Confidence 8888887543 1222333344779999999988 8654 5789999999987 65553 1222 12
Q ss_pred CCCcEEEEccccccCCCCCceEEEEEe
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
...=|++.||-|-||.+-.-+|++.+-
T Consensus 235 ~~~~lva~S~SKnfgLYgERVGa~~vv 261 (396)
T COG1448 235 GPELLVASSFSKNFGLYGERVGALSVV 261 (396)
T ss_pred CCcEEEEehhhhhhhhhhhccceeEEE
Confidence 233577778889888766678888775
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0016 Score=70.75 Aligned_cols=202 Identities=16% Similarity=0.212 Sum_probs=121.8
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++-|.||+.. |--++.+.+++.+.+.. + .+||..+ +..-+.-+.|.
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~---G-----------------------~~fg~Pt-e~Ei~~Aell~ 103 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER---G-----------------------LSFGAPT-ELEVELAELLI 103 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHHHh---c-----------------------CCCCCCC-HHHHHHHHHHH
Confidence 57889999864 33456688887654421 1 1123222 23334557777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHH---HhhCCCCCCCeEE-EeccccchhhHH-HHHHHHhcCC---------------
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLL---AESYPFMSVKNLL-TVYDYESEAVEA-MIRTSEKRGA--------------- 240 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv---~~sl~~~~gd~il-t~~d~~s~~v~~-~~~~a~~~G~--------------- 240 (632)
+.+..=+ -|=|++|+|+|.-.+ +++| ...++|+ ..-.||. ...+ +... ..|+
T Consensus 104 ~~~p~~e---~vrfvnSGTEAtmsAiRlARa~--TgR~kIikF~G~YHG-~~D~~lv~a--gsg~~t~g~p~s~Gvp~~~ 175 (432)
T COG0001 104 ERVPSIE---KVRFVNSGTEATMSAIRLARAY--TGRDKIIKFEGCYHG-HSDSLLVKA--GSGAATLGSPSSPGVPADV 175 (432)
T ss_pred HhcCccc---EEEEecchhHHHHHHHHHHHHh--hCCCeEEEEcCCCCC-CccHHHhhc--CcCcccCCCCCCCCCChhh
Confidence 7777632 589999999997764 4555 4455665 4445665 3443 3221 1121
Q ss_pred --EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-----HHHHHhhCCcEEEEeccccC-
Q 006746 241 --RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-----WMRIAQENDWHILIDACALG- 312 (632)
Q Consensus 241 --~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-----i~~~a~~~g~~vlvDaaq~~- 312 (632)
.+..+|+ -|++.+++++.+.. ..+.-|.+--+-..-|.+.|-+ +-++|+++|+++|+|-+-.+
T Consensus 176 a~~ti~~~y------ND~~al~~~~~~~g---~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGF 246 (432)
T COG0001 176 AKHTLVLPY------NDLEALEEAFEEYG---DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF 246 (432)
T ss_pred hccEEEecC------CCHHHHHHHHHHcC---CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhc
Confidence 1222333 27889999998642 3466666766666788888854 45789999999999975432
Q ss_pred -----CCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 313 -----PKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 313 -----g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
|.. .-.+ ..||+.++ =|+.|. --=+|++--|++.++.+.|
T Consensus 247 R~~~gGaq-~~~g---i~PDlttl--GKiIGG-GlP~ga~gGr~eiM~~~~p 291 (432)
T COG0001 247 RVALGGAQ-GYYG---VEPDLTTL--GKIIGG-GLPIGAFGGRAEIMEQLAP 291 (432)
T ss_pred ccCCcccc-cccC---cCcchhhh--hhhhcC-CcceeeeccHHHHHhhhCC
Confidence 221 1223 35787654 496553 2236888888888875544
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.001 Score=73.08 Aligned_cols=309 Identities=16% Similarity=0.219 Sum_probs=172.6
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--C----CCCCe-EEE-eccccchhhHHH-----HHHHHh-c
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--F----MSVKN-LLT-VYDYESEAVEAM-----IRTSEK-R 238 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--~----~~gd~-ilt-~~d~~s~~v~~~-----~~~a~~-~ 238 (632)
.+.-++++++..-. +=..|.||.|+++|++.+++..- | ++.++ +++ ...||.+.+..| ...-+. .
T Consensus 90 ~~LA~~L~~~aP~~-~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~ 168 (449)
T COG0161 90 IELAEKLAELAPEG-GLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFY 168 (449)
T ss_pred HHHHHHHHHhCCCC-CccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhc
Confidence 35666777776622 12379999999999998775421 2 23333 654 457886555443 111101 1
Q ss_pred C---CEEEEEeccC--Cc-----cc----cCHHHHHHHHHhcCcCCCceeEEEE-eccCCCCccccchH-----HHHHHh
Q 006746 239 G---ARVMSAEFSW--PR-----LR----INSEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYPYL-----WMRIAQ 298 (632)
Q Consensus 239 G---~~v~~v~~~~--~~-----~~----i~~~~l~~~i~~~~~~~~~~~Lv~~-~~~sn~TG~~~pl~-----i~~~a~ 298 (632)
+ ..+..++... .. .. -..++|+++|.... ..++.-|++ |.+....|++.|-. +-++|+
T Consensus 169 ~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g--~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ 246 (449)
T COG0161 169 DPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHG--PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICD 246 (449)
T ss_pred cccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcC--cccEEEEEecccccccCCcccCChHHHHHHHHHHH
Confidence 1 1222333221 00 11 12456677776532 123444444 44555588887754 346799
Q ss_pred hCCcEEEEeccccC-CCCCC-CCCCC--CCCCcEEEEcccc-ccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccc
Q 006746 299 ENDWHILIDACALG-PKDMD-SFGLS--LVRPDFLICSFYQ-IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKK 373 (632)
Q Consensus 299 ~~g~~vlvDaaq~~-g~~m~-~ldls--~~~~Df~~~S~hK-~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~ 373 (632)
++|+++|+|-+..+ |.. . -+-++ ...||+++++ | +-|. --=+|++++++++.+.+.... +|.
T Consensus 247 ky~ILlI~DEV~tGFGRT-G~~FA~e~~gi~PDi~~~a--KGLT~G-Y~Pl~a~l~~~~I~~~~~~~~-~~~-------- 313 (449)
T COG0161 247 KYGILLIADEVATGFGRT-GKMFACEHAGIVPDILCLA--KGLTGG-YLPLSAVLTSDRIYEAFSDGD-AGA-------- 313 (449)
T ss_pred HcCcEEEeecceeCCCcC-chhhhhhhcCCCCCeeeec--cccccc-chhhHhHhhhHHHHHHHhccc-CCe--------
Confidence 99999999975333 210 1 12222 2478999876 7 3222 223777888887765443321 111
Q ss_pred ccccccccCCCCCCccccchhhhhhhccccCCCc-cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhh
Q 006746 374 QLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIEC 452 (632)
Q Consensus 374 ~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~-~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (632)
| ..| ..|++ +++- -.+|
T Consensus 314 ---------------------f---~HG-~TYsghPlac------------AaAl------------------------- 331 (449)
T COG0161 314 ---------------------F---MHG-HTYSGNPLAC------------AAAL------------------------- 331 (449)
T ss_pred ---------------------e---ccC-CccccCHHHH------------HHHH-------------------------
Confidence 0 011 12221 1110 1112
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-cCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCcc-----CHHH
Q 006746 453 RGLDQVDSLGLTMISRRGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI-----EPVL 526 (632)
Q Consensus 453 ~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~-l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i-----~~~~ 526 (632)
+.|+.+.+ +.+.+|++.+..+|.++|.+ +. +.|.| |.- ...|-+.++-+...++.+. -...
T Consensus 332 a~L~i~e~---e~l~~~~~~~~~~l~~~L~~~l~-----~~p~V---gdV--R~~Gli~~iElv~d~~t~~~f~~~~~~~ 398 (449)
T COG0161 332 ANLDILEE---EDLLERVAEIGAYLQAGLQAALA-----DHPLV---GDV--RGLGLIGAIELVADKATKTPFEARVGAR 398 (449)
T ss_pred HHHHHHHh---cCHHHHHHHHHHHHHHHHHHhcc-----cCCcE---EEe--eccceEEEEEEecccccccchhhhHHHH
Confidence 45666665 45678888999999999987 32 11333 221 2346666776654433221 1335
Q ss_pred HHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHH
Q 006746 527 VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 606 (632)
Q Consensus 527 V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l 606 (632)
+.+.+-++|+.+|.. + .+|=+++-+..|.|||+++++.+
T Consensus 399 ~~~~~~e~Gl~iRp~----------------------------------------g-~~i~~~PPliit~~eid~l~~~l 437 (449)
T COG0161 399 VRAAALERGLLIRPL----------------------------------------G-DVIYLMPPLIITREEIDELVDAL 437 (449)
T ss_pred HHHHHHHCCeEEeec----------------------------------------C-CEEEEcCCccCCHHHHHHHHHHH
Confidence 556666788888732 1 27889999999999999999999
Q ss_pred HHhhhhc
Q 006746 607 AQFLDAD 613 (632)
Q Consensus 607 ~~~l~~~ 613 (632)
++-|+..
T Consensus 438 ~~al~~~ 444 (449)
T COG0161 438 REALDET 444 (449)
T ss_pred HHHHHHH
Confidence 9988753
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-05 Score=82.73 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=115.4
Q ss_pred EeecCCCC-----CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccc--cccc-hhHHHHHHHHHHHHH
Q 006746 111 CLDYFGIG-----LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL--HGGQ-ESGLESAMKKRIMDF 182 (632)
Q Consensus 111 yLD~ag~g-----l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~--~g~~-~~~~~~~~R~~ia~~ 182 (632)
++|++|.| .++.-|.+.+..+..-.- .++|+...-+ -|.. ...+-...-..+.+.
T Consensus 6 ~~~~~g~gere~rv~s~lv~~r~~~~~Hgig-----------------rsg~~~~~qPKa~Gss~~~~ltn~l~~d~~~~ 68 (389)
T PF05889_consen 6 FPDNVGVGEREGRVASSLVARRHYGFAHGIG-----------------RSGDLAAAQPKAAGSSLLAKLTNSLVLDALRL 68 (389)
T ss_dssp -TT-EE-SS-S---SSHHHHHHTTTHCSTBS-----------------BTTBTTS-BTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhHHHhhccccccccCcC-----------------CCCCccccCCCccCcHHHHHHHHHHHHHHHHH
Confidence 67788887 788877777655432110 1233322111 0111 123333444455667
Q ss_pred cCCCCCCccEEEeCCHHH-HHHHHHhhCCCCC-CCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec--cCCccccCHH
Q 006746 183 LNISENDYGMVFTANRTS-AFKLLAESYPFMS-VKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF--SWPRLRINSE 257 (632)
Q Consensus 183 l~a~~~ey~vvft~naT~-al~lv~~sl~~~~-gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~--~~~~~~i~~~ 257 (632)
+|+..-. ..+.++-+|. ++-+...++.-++ ++.|+. ..||-| .+-. +...|.+++.|+. ..+....+.+
T Consensus 69 ~G~~~~~-~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkS-c~ka----i~~AGl~~~vV~~~~~~d~l~td~~ 142 (389)
T PF05889_consen 69 AGLRSVK-SCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKS-CFKA----IERAGLEPVVVENVLEGDELITDLE 142 (389)
T ss_dssp TTHTTHC-EEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHH-HHHH----HHHTT-EEEEE-EEEETTEEEEHHH
T ss_pred cCCcccc-ceEEEecccccHHHHHHHHHhcccCCceEEEeeccccc-hHHH----HHhcCCeEEEeeccCCCCeeeccHH
Confidence 7887432 4556665554 3444444443223 344554 468876 3433 3556999999974 2344455788
Q ss_pred HHHHHHHhcCcCCCceeEEEEeccCCCCccccc-hH-HHHHHhhCCcEEEEeccccC---------------CCCCCCCC
Q 006746 258 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP-YL-WMRIAQENDWHILIDACALG---------------PKDMDSFG 320 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p-l~-i~~~a~~~g~~vlvDaaq~~---------------g~~m~~ld 320 (632)
.+++.+++.. ....|.++++.|-+.|...| ++ |+++|+++|+..+|-.|-.+ |. .+.+
T Consensus 143 ~ie~~i~~~G---~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GR--vda~ 217 (389)
T PF05889_consen 143 AIEAKIEELG---ADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGR--VDAF 217 (389)
T ss_dssp HHHHHHHHHC---GGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHST--CSEE
T ss_pred HHHHHHHHhC---CCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCC--ccee
Confidence 8888886532 34589999999999999999 99 99999999999999999888 76 4566
Q ss_pred CCCCCCcEEEEcccc-ccC
Q 006746 321 LSLVRPDFLICSFYQ-IFG 338 (632)
Q Consensus 321 ls~~~~Df~~~S~hK-~~G 338 (632)
++..+.||++-++|| +.+
T Consensus 218 vqS~dkNF~VPvGgai~As 236 (389)
T PF05889_consen 218 VQSTDKNFMVPVGGAIMAS 236 (389)
T ss_dssp EEEHHHHHCEESSHEEEEE
T ss_pred eeecCCCEEecCCCcEEEe
Confidence 666666777777777 444
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0011 Score=69.07 Aligned_cols=173 Identities=12% Similarity=0.158 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHH-----hhCCCC--CCCe--EEEe-ccccchhhHHHH-----H
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLA-----ESYPFM--SVKN--LLTV-YDYESEAVEAMI-----R 233 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~-----~sl~~~--~gd~--ilt~-~d~~s~~v~~~~-----~ 233 (632)
.+...+.-+.+.++|+-+ .|.=++.+.+|.+.+. .++..+ |.++ |+.. ..+|.-....+- .
T Consensus 100 nd~~~~f~~~vt~lf~~~----kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~d 175 (427)
T KOG1402|consen 100 NDVLGEFAEYVTKLFGYD----KVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPD 175 (427)
T ss_pred hhhHHHHHHHHHHhcCcc----eeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcc
Confidence 355567778888888875 3444555556555443 233322 3333 4543 344431111000 0
Q ss_pred HHHhcCC----EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-----HHHHHhhCCcEE
Q 006746 234 TSEKRGA----RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-----WMRIAQENDWHI 304 (632)
Q Consensus 234 ~a~~~G~----~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-----i~~~a~~~g~~v 304 (632)
.-+..|- .+..+|. -+.++|+.+|.+. ++.-|.+--.+-..|++.|-. .-++|.++++++
T Consensus 176 s~~~fgp~~P~~~~~v~Y------~d~eale~~l~~~-----~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~ 244 (427)
T KOG1402|consen 176 SWDGFGPFLPGVVDKVPY------GDAEALEVALKSP-----NVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLL 244 (427)
T ss_pred hhhccCCCCCCcceeecc------CCHHHHHHHhcCC-----CeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEE
Confidence 0011110 1222322 1678999998863 578889999999999999854 456788999999
Q ss_pred EEeccccC----CCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 305 LIDACALG----PKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 305 lvDaaq~~----g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
++|-.|.+ |+ |...|-+...||.+++. |.++..-.-+.+.+..++++-.++|
T Consensus 245 I~DEvQTGl~RTGk-~la~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~~~~p 300 (427)
T KOG1402|consen 245 IADEVQTGLARTGK-LLACDYENVRPDIVILG--KALSGGVYPVSAVLADDDIMLNIKP 300 (427)
T ss_pred EehhhhhcccccCc-EEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHhccCC
Confidence 99999887 33 45667788899999875 7443112225666667776655554
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00078 Score=71.52 Aligned_cols=302 Identities=13% Similarity=0.130 Sum_probs=166.2
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-eEE-EeccccchhhHHHHH--HHHhcC----C--EE
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK-NLL-TVYDYESEAVEAMIR--TSEKRG----A--RV 242 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-~il-t~~d~~s~~v~~~~~--~a~~~G----~--~v 242 (632)
.+.-+++++.|-.+-. .+.|++++++|..+.......-.|. +|+ ....||.++...|-- ..-++. . -+
T Consensus 95 ~~~Ae~L~s~~P~~l~--~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~ 172 (442)
T KOG1404|consen 95 HDLAEALVSKLPGDLK--VVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGV 172 (442)
T ss_pred HHHHHHHHHhCCCCce--EEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcc
Confidence 3555666666655544 6899999999999876543222222 344 566777654433210 000110 0 01
Q ss_pred EE-Eecc-----CCccc--cCH----HHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-----HHHHHhhCCcEEE
Q 006746 243 MS-AEFS-----WPRLR--INS----EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-----WMRIAQENDWHIL 305 (632)
Q Consensus 243 ~~-v~~~-----~~~~~--i~~----~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-----i~~~a~~~g~~vl 305 (632)
.. ...+ |++.. --. +++++.|...+ ...+.-|+.-.++-+-|+..+.. .-+.|+++|.+++
T Consensus 173 ~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~--~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~I 250 (442)
T KOG1404|consen 173 HHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDG--PETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFI 250 (442)
T ss_pred cccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcC--CCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEE
Confidence 11 1111 11110 012 33444444332 23466666677778889887644 4467889999999
Q ss_pred EeccccC----CCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccccccc
Q 006746 306 IDACALG----PKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEF 381 (632)
Q Consensus 306 vDaaq~~----g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~ 381 (632)
.|-+|.+ |+ |-.++-...-||.+. .-|.+|. -.-+|+.+..++..+.+...... +.
T Consensus 251 aDEVqtGfGRtG~-~wgfe~h~v~PDIvT--mAKgiGn-G~Pl~AVvtt~EIa~v~~~~~~~-----------fn----- 310 (442)
T KOG1404|consen 251 ADEVQTGFGRTGH-MWGFESHGVVPDIVT--MAKGIGN-GFPLGAVVTTPEIADVLNQKSSH-----------FN----- 310 (442)
T ss_pred ehhhhhccccccc-cccccccCCCccHHH--HHhhccC-CCcceeeecCHHHHHHHHhcccc-----------cc-----
Confidence 9999876 32 333444444567664 4486653 34578888888877666443210 00
Q ss_pred CCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh
Q 006746 382 SSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL 461 (632)
Q Consensus 382 ~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~ 461 (632)
.+ .| .|.... .++ +.|+.++
T Consensus 311 ------------Ty----gg-nP~a~a----------------vg~-------------------------aVL~Vik-- 330 (442)
T KOG1404|consen 311 ------------TY----GG-NPVACA----------------VGL-------------------------AVLKVIK-- 330 (442)
T ss_pred ------------cc----CC-CchhHH----------------HHH-------------------------HHHHHHH--
Confidence 00 00 111100 111 4455554
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHH--HH---HHHHHhCCc
Q 006746 462 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV--LV---QKLADRENI 536 (632)
Q Consensus 462 Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~--~V---~kla~~~gI 536 (632)
-++++++......||.+.|.+++..+ | |.|+- .-||=++-..+-+.+-+.-+|+ .. -+-..+.|+
T Consensus 331 -ee~LqE~aa~vG~yl~~~l~~l~d~h----~---iIGdV--RG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gv 400 (442)
T KOG1404|consen 331 -EENLQENAAEVGSYLLEKLAALKDKH----P---IIGDV--RGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGV 400 (442)
T ss_pred -HHhHHHHHHHHHHHHHHHHHHHhhcC----C---ceeec--ccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCe
Confidence 48999999999999999999996433 3 33542 2345555555544331222222 11 122233455
Q ss_pred EEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHH
Q 006746 537 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 606 (632)
Q Consensus 537 ~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l 606 (632)
-++-| .....++|+++.+.-|.|||+.+++..
T Consensus 401 lvg~g--------------------------------------~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 401 LVGKG--------------------------------------GIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred eeecc--------------------------------------cccceEEEecCCeeccHHHHHHHHHHH
Confidence 55322 122239999999999999997777654
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=76.18 Aligned_cols=174 Identities=12% Similarity=0.134 Sum_probs=116.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHH-HHH---Hhh-CCC--CCCC-----eEE-EeccccchhhHHHHHHHHhcC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAF-KLL---AES-YPF--MSVK-----NLL-TVYDYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al-~lv---~~s-l~~--~~gd-----~il-t~~d~~s~~v~~~~~~a~~~G 239 (632)
.++-.++.++.|-+++- +=||+++++-+. ..+ -.. +|- ..|- -|+ |+.+.|- .+...|.-.|
T Consensus 144 ~~vl~km~~ivGw~~~~-DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHY----Si~kaAa~lg 218 (510)
T KOG0629|consen 144 EEVLAKMREIVGWEEGG-DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHY----SIKKAAAFLG 218 (510)
T ss_pred HHHHHHHHHHhCCCCCC-CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchh----hHHHHHHHhc
Confidence 35555666677777642 346787665442 222 211 231 1222 244 4444332 2233344455
Q ss_pred ---CEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC
Q 006746 240 ---ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD 315 (632)
Q Consensus 240 ---~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~ 315 (632)
-.++.|+.+ ..|.+.+++|++.|-..+.+.-.+-+|..++-+++-|+.=|++ |+++|++++.++.||||=.+|.-
T Consensus 219 ~gtd~c~~v~t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglL 297 (510)
T KOG0629|consen 219 LGTDHCIKVKTD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLL 297 (510)
T ss_pred cCCceeEEeccc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccc
Confidence 467778877 7899999999999987543223468899999999999999999 99999999999999998655542
Q ss_pred CCCC---CCC-CCCCcEEEEccccccCCCCCceEEEEEeCCC
Q 006746 316 MDSF---GLS-LVRPDFLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 316 m~~l---dls-~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
|..- -|+ --++|-+..+.||+.|. |.-.+++..|.+-
T Consensus 298 mS~k~R~kl~Giera~SvtwnpHK~~ga-plqCsa~l~r~~g 338 (510)
T KOG0629|consen 298 MSRKHRHKLTGIERANSVTWNPHKLMGA-PLQCSAFLTREEG 338 (510)
T ss_pred cChhhHhhccCccccCceeecHHHhhcC-cchhhHHHHHHHH
Confidence 2211 111 12679999999999998 8888888888765
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00032 Score=78.14 Aligned_cols=361 Identities=15% Similarity=0.145 Sum_probs=189.0
Q ss_pred CCCchhHHHHHHhhccCcCCCCceEeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCC-ccccccccccccccc
Q 006746 87 YFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDI-PFFSVSYKTGNLKTQ 161 (632)
Q Consensus 87 y~~~~~~d~iR~~ef~~L~~~~~vyLD~ag~gl~----~~~~~~a~~~~~~~~~~~~P~~~~~~-p~f~~~~~~~n~~s~ 161 (632)
|.+.+.+.++++ +..++++|=.|.|.|.+ |...++.+.. +|.+|.+. | | ...
T Consensus 100 ~~E~eml~~l~~-----ia~kNk~~ksfIGmGYyn~~vP~~I~RNile--------np~W~TqYTP-----Y-----Q~E 156 (1001)
T KOG2040|consen 100 LCESEMLQHLED-----IASKNKIWKSFIGMGYYNTHVPAVILRNILE--------NPGWYTQYTP-----Y-----QAE 156 (1001)
T ss_pred cCHHHHHHHHHH-----HHhhhhHHHHhhccccccccCcHHHHHHhhh--------CCcceeccCC-----C-----chh
Confidence 334444555543 22378899999998865 3333333322 24333221 1 0 111
Q ss_pred cccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCE
Q 006746 162 LLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 162 ~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
...|+-+ -+-.-...|+++-|.+-.+ --+---+|.|-+.++-++...+++++++....|.+...-++.-++-.|++
T Consensus 157 IsQGRLE--sllNyQTmi~dlTGL~~aN--ASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~ 232 (1001)
T KOG2040|consen 157 ISQGRLE--SLLNYQTMITDLTGLPMAN--ASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIK 232 (1001)
T ss_pred hhhhhHH--HHhhhHHhhhhccCCcccc--hhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhcccccccee
Confidence 2223332 2225677888988887542 22334566666666666656677777766544444555555444555555
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
+...++. +. -...+ +-.--||-+| ..-|.++|.. +++.++++|.++++ |+-++...+.. .
T Consensus 233 v~~~~~~---------~~---~~s~~--~v~gvlvQYP---~t~G~i~d~~el~~~a~~~~s~vv~-atDLLaLtiLr-p 293 (1001)
T KOG2040|consen 233 VVVSDIK---------EA---DYSSK--DVSGVLVQYP---DTEGSVLDFDELVELAHANGSLVVM-ATDLLALTILR-P 293 (1001)
T ss_pred EEecCHH---------Hh---hcccc--ceeEEEEEcC---CCCCcccCHHHHHHHhhccCceEEE-eehhhHHHccC-C
Confidence 4433221 11 11111 0011222232 4579999999 99999999988765 22222111000 0
Q ss_pred CCCCCCcEEEEccccccCCCCC-----ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 321 LSLVRPDFLICSFYQIFGENPS-----GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~-----G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
--++++|+++.|.+. ||. |- ..|++.|+++....+.-...| ... .. .. ..+.++
T Consensus 294 PgefGaDIavGSsQR-FGV-PlGYGGPHAaFfAv~~~l~R~mPGRiiG-vtk---D~-------------~g--k~a~RL 352 (1001)
T KOG2040|consen 294 PGEFGADIAVGSSQR-FGV-PLGYGGPHAAFFAVSESLVRMMPGRIIG-VTK---DA-------------LG--KEAYRL 352 (1001)
T ss_pred hhhcCceeeeccccc-cCc-cccCCCchHHHHHHHHHHHhhCCCceEe-eee---cc-------------cc--cHHHHH
Confidence 135789999999998 333 43 456677776544333322222 111 00 00 000000
Q ss_pred hhhhccccCCCccchhhhh-----h-cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH-HHHhhCHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMR-----Q-SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD-QVDSLGLTMISR 468 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~-----~-~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd-~~~~~Gl~~I~~ 468 (632)
++.+| | -.|.|+--.++|- +-+.+-.. +.-..|++.|.+
T Consensus 353 --------------ALQTREQHIrRDKATSNICTAQALL--------------------ANmaAmyaiYHGp~gL~~IAr 398 (1001)
T KOG2040|consen 353 --------------ALQTREQHIRRDKATSNICTAQALL--------------------ANMAAMYAIYHGPHGLKEIAR 398 (1001)
T ss_pred --------------HHHHHHHHhhhhccchhhhHHHHHH--------------------HHHHHHHhhhcCcHHHHHHHH
Confidence 01111 1 1244444444442 00000000 111247999999
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
|+..++..|..+|+...| .++ -. .---++.+.+.+ +.+.|...|.+..|-+|.
T Consensus 399 rvh~~T~~l~~~l~~agh------el~---~k----~fFDTLkI~~~~------s~~~~l~rA~~~~iNlr~-------- 451 (1001)
T KOG2040|consen 399 RVHNLTLILAEGLKNAGH------ELQ---HK----PFFDTLKIRCGC------SAEEVLDRAAKRQINLRL-------- 451 (1001)
T ss_pred HHHHHHHHHHHHHhhcch------hhc---cc----cccceEEEEecC------cHHHHHHHHHhhcCceEE--------
Confidence 999999999999998743 222 11 111233343333 456666666666677762
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
...+.|-+||---.+.+||+.|+..+.
T Consensus 452 --------------------------------~ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 452 --------------------------------VEDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred --------------------------------eecCceEEeecccccHHHHHHHHHHHc
Confidence 134688999999999999999987654
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.004 Score=62.92 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=94.2
Q ss_pred cEEEeCCHHHHHHHHHhhCCCCCCC-eEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcC
Q 006746 191 GMVFTANRTSAFKLLAESYPFMSVK-NLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK 269 (632)
Q Consensus 191 ~vvft~naT~al~lv~~sl~~~~gd-~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~ 269 (632)
.|...-++-+.+.++++.. ..||+ +|+.+--..|-.+ -.|.-.+++|+.+|.+ |+..++.+.+.+.+....
T Consensus 88 nic~GvGsDE~ID~iiR~~-c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~-pdF~lnvdai~evl~~ds-- 159 (375)
T KOG0633|consen 88 NICVGVGSDELIDLIIRCV-CDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLN-PDFSLNVDAIAEVLELDS-- 159 (375)
T ss_pred ceEEecCcHHHHHHHHhhe-ecCCccceeecCCcceeEE----EEeecCCceEEEecCC-CCccccHHHHHHHHhccc--
Confidence 5777889999999999987 56784 4764321111111 1235579999999998 788899999999887642
Q ss_pred CCceeEEEEeccCCCCccccchH-HHHHHhh-CCcEEEEeccc--cCCCCCCCCCCCCCCCcE-EEEccccccCC
Q 006746 270 KKQRGLFVFPLHSRMTGARYPYL-WMRIAQE-NDWHILIDACA--LGPKDMDSFGLSLVRPDF-LICSFYQIFGE 339 (632)
Q Consensus 270 ~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~-~g~~vlvDaaq--~~g~~m~~ldls~~~~Df-~~~S~hK~~G~ 339 (632)
..+++.++...|+||.++..+ |-++.+- -+.+|+||-|- +-| ++..+.+=.--+.. +.-.+-|-||.
T Consensus 160 --~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg-~~S~~~lV~kYpNLivlqTlSKsfGL 231 (375)
T KOG0633|consen 160 --KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSG-VESRMKLVKKYPNLIVLQTLSKSFGL 231 (375)
T ss_pred --cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeecc-ccccchHhHhCCceeehhhhhhhcCc
Confidence 579999999999999999999 7777654 26789999762 223 12333332223333 33355677774
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.013 Score=60.57 Aligned_cols=186 Identities=16% Similarity=0.138 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--CCCCCe--EEEec--cccchhhHHHHH-HHHhcCCEE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--FMSVKN--LLTVY--DYESEAVEAMIR-TSEKRGARV 242 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--~~~gd~--ilt~~--d~~s~~v~~~~~-~a~~~G~~v 242 (632)
.+++..-+.+.+-+|-.-++..|.+|++...++--++.-|- ...|++ ||++. ||-.=+-..+.+ .--...-++
T Consensus 78 ~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~i 157 (417)
T COG3977 78 VLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNI 157 (417)
T ss_pred HHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCc
Confidence 45556666666666655555689999999998877776653 334554 66543 332100000000 000000011
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKDMDS 318 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~m~~ 318 (632)
..++-..=...+|.+++. +.+ .++.++++-..|+||-.+-=+ +-++|+++|+.+++|-|-.+|. -.
T Consensus 158 el~~~g~FKY~vDF~~l~--i~e------~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PF--P~ 227 (417)
T COG3977 158 ELLPAGQFKYHVDFEHLH--IGE------STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPF--PG 227 (417)
T ss_pred ccccccceeeccCHHHcc--ccc------ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCC--Cc
Confidence 111100011234555543 223 469999999999999987543 4567899999999999988775 23
Q ss_pred CCCCC----CCCc-EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceee
Q 006746 319 FGLSL----VRPD-FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSL 368 (632)
Q Consensus 319 ldls~----~~~D-f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~ 368 (632)
+-+++ |+.. .+++|.-| .|.|..-+|+++.+++++..+.... |.+++
T Consensus 228 iifsd~~~~w~~NiilC~SLSK-~GLPG~R~GIiIane~viqaitnmn--~iisL 279 (417)
T COG3977 228 IIFSDATPLWNENIILCMSLSK-LGLPGSRCGIIIANEKVIQAITNMN--GIISL 279 (417)
T ss_pred eecccccccCCCCEEEEeehhh-cCCCCcceeEEEccHHHHHHHHhcc--ceeee
Confidence 33332 5555 45667777 5553346799888888876664422 45544
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=69.31 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCCCCCccEEEe--CCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHH-------HHHhcCCEEEE
Q 006746 174 AMKKRIMDFLNISENDYGMVFT--ANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIR-------TSEKRGARVMS 244 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft--~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~-------~a~~~G~~v~~ 244 (632)
...+..|+.||+.. .+|=. -|+|.|+.+.+.++ ++|||+++....-|-..+..++. ..+..|++...
T Consensus 58 ~le~iyA~vfgaE~---ALVRpq~vSGTHAi~~~Lfg~-LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~ 133 (403)
T PF06838_consen 58 KLERIYADVFGAED---ALVRPQFVSGTHAIALALFGV-LRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYRE 133 (403)
T ss_dssp HHHHHHHHHCT-SE---EEEETTS-SHHHHHHHHHHHH---TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE
T ss_pred HHHHHHHHHhCchh---hhhcccccchHHHHHHHHHhc-CCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEE
Confidence 34455688999852 34432 28999999999998 89999987543333222222221 23678999999
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccc----cc---hH-HHHHHhh--CCcEEEEeccccCCC
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR----YP---YL-WMRIAQE--NDWHILIDACALGPK 314 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~----~p---l~-i~~~a~~--~g~~vlvDaaq~~g~ 314 (632)
+++. +++.+|.+.++++|++++ +++.+.- ..|.- +. ++ +++.+|+ -++.++||-|-.-=.
T Consensus 134 v~L~-~dg~~D~~~i~~~~~~~t------k~v~IQR---SrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFv 203 (403)
T PF06838_consen 134 VPLT-EDGTIDWEAIKKALKPNT------KMVLIQR---SRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFV 203 (403)
T ss_dssp --B--TTSSB-HHHHHHHHHTTE------EEEEEE----S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTT
T ss_pred Eeec-CCCCcCHHHHHHhhccCc------eEEEEec---CCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceec
Confidence 9998 788999999999999754 8877653 33432 23 34 4555555 489999999832211
Q ss_pred CCCCCCCCCCCCcEEEEccccccC--CCCCceEEEEEeCCCccc
Q 006746 315 DMDSFGLSLVRPDFLICSFYQIFG--ENPSGFGCLFVKKSTVPI 356 (632)
Q Consensus 315 ~m~~ldls~~~~Df~~~S~hK~~G--~~P~G~G~L~Vr~~~~~~ 356 (632)
....-...++|.++.|.-|-.| ..| .=|.+.-|+++++.
T Consensus 204 --E~~EP~~vGADl~aGSLIKNpGGgiAp-tGGYIaGr~~lVe~ 244 (403)
T PF06838_consen 204 --ETQEPTEVGADLMAGSLIKNPGGGIAP-TGGYIAGRKDLVER 244 (403)
T ss_dssp --SSS-GGGGT-SEEEEETTSGGGTTT-S-S-EEEEESHHHHHH
T ss_pred --cccCccccchhheeccceeCCCCCccC-cCCEEechHHHHHH
Confidence 1222234588999999999433 323 33677777777654
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.03 Score=63.00 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHH----HHHHHhhCCCCCCCe---E-EEec-cccchhhHHHHHHHHhcC
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSA----FKLLAESYPFMSVKN---L-LTVY-DYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~a----l~lv~~sl~~~~gd~---i-lt~~-d~~s~~v~~~~~~a~~~G 239 (632)
.++..+..+.+.++-|-+ .+.|-+|...+ =-.++++|.-.+|+. | |++. -|-.| +. .|...|
T Consensus 581 ~~lf~~Le~~Lc~iTG~D----~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN--PA---SA~Mag 651 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFD----SFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN--PA---SAAMAG 651 (1001)
T ss_pred HHHHHHHHHHhheeeccc----ceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC--hh---hHHhcC
Confidence 467777777778777775 57788775433 224566665455542 4 3443 34332 22 345569
Q ss_pred CEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccc-cchH-HHHHHhhCCcEEEEecccc---CCC
Q 006746 240 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYL-WMRIAQENDWHILIDACAL---GPK 314 (632)
Q Consensus 240 ~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~-~pl~-i~~~a~~~g~~vlvDaaq~---~g~ 314 (632)
.+|+.|..+ ..|.+|..+|+.+.++.. .+...+.++..|+ .|+- -.++ ++.+.|++|-.|.+|+|-. +|.
T Consensus 652 mkvvpV~~~-~~G~id~~dLk~kaekh~---~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGl 726 (1001)
T KOG2040|consen 652 MKVVPVGCD-ANGNIDMVDLKAKAEKHK---DNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGL 726 (1001)
T ss_pred CEEEEeecc-CCCCccHHHHHHHHHHhh---hhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecc
Confidence 999999888 788999999999887653 3455666677665 4554 4688 9999999999999999632 232
Q ss_pred CCCCCCCCCCCCcEEEEcccccc----CCCCCceEEEEEeCCCcccc
Q 006746 315 DMDSFGLSLVRPDFLICSFYQIF----GENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 315 ~m~~ldls~~~~Df~~~S~hK~~----G~~P~G~G~L~Vr~~~~~~L 357 (632)
- .|= +++.|+.-...||.| |...+|.|-+-||+-+..-|
T Consensus 727 c-~pG---d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfL 769 (1001)
T KOG2040|consen 727 C-RPG---DIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL 769 (1001)
T ss_pred c-CCc---cccccceeecccceeeecCCCCCCCCCccchhhhccccC
Confidence 1 222 357899999999944 21134889999998776554
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0081 Score=71.44 Aligned_cols=230 Identities=13% Similarity=0.093 Sum_probs=131.4
Q ss_pred HHHHHHHHhcC--cCCCceeEEEEec-cCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CC--CCCCCCCCCCC
Q 006746 257 EKLRKMVVSKG--KKKKQRGLFVFPL-HSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PK--DMDSFGLSLVR 325 (632)
Q Consensus 257 ~~l~~~i~~~~--~~~~~~~Lv~~~~-~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~--~m~~ldls~~~ 325 (632)
+.+++.|.... ....++..|++-- +....|...| ++ +.++|+++|+++|+|-++.+ |. .|-..+.-...
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC
Confidence 45666665310 0123455555555 4566788875 33 56789999999999998765 21 01222222346
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCC
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 405 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f 405 (632)
||+++++ |.+|..--=+|++++++++.+.+......+ .+. ..+ .|
T Consensus 647 PDIi~~g--KgLtgG~~Plaa~l~~~~I~~~f~~~~~~~---------~~~----------------------hg~--Ty 691 (817)
T PLN02974 647 PDIACYA--KLLTGGLVPLAATLATEEVFEAFRGPSKLD---------ALL----------------------HGH--SY 691 (817)
T ss_pred CCEEeec--ccccCCCCccEEEEEcHHHHHhhccccccC---------Ccc----------------------cCC--CC
Confidence 9999876 855421012799999988766543110000 000 011 11
Q ss_pred Cc-cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC-HHHHHHHHHHHHHHHHHHH-H
Q 006746 406 SG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNAL-M 482 (632)
Q Consensus 406 ~~-~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G-l~~I~~r~~~L~~~L~~~L-~ 482 (632)
++ +++. ..+ .+.|+.+++.+ ++++.++.+.|..+|.+.| .
T Consensus 692 ~gnpl~c------------Aaa-------------------------la~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~ 734 (817)
T PLN02974 692 TAHPMGC------------AAA-------------------------AKALQWYKDPSTNPNLIPPGSRLRELWDEELVR 734 (817)
T ss_pred CcCHHHH------------HHH-------------------------HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 111 26777777654 3577777888888777777 3
Q ss_pred ccC-CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC-ccC---HHHHHHHHH-hCCcEEccCccCChHHHhHHHHhh
Q 006746 483 KLQ-HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE-KIE---PVLVQKLAD-RENISLSYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 483 ~l~-h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~-~i~---~~~V~kla~-~~gI~lr~G~~c~~~~~~~~~~~~ 556 (632)
.+. | |.| +. -.-+|-++++.+.+.++. ... ...+++.+. ++||.+|..
T Consensus 735 ~l~~~------p~V---~~--VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~--------------- 788 (817)
T PLN02974 735 AISSL------PNV---ER--VVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL--------------- 788 (817)
T ss_pred HHhhC------CCe---eE--EEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec---------------
Confidence 332 2 322 11 023577888887653221 111 123444444 688887621
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+ .+||+.+.++++.||++++++.|.+-|
T Consensus 789 -------------------------G-nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 789 -------------------------G-NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred -------------------------C-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1 489999999999999999999988754
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.34 Score=52.31 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-CC---C-CCC--eEE-EeccccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-PF---M-SVK--NLL-TVYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-~~---~-~gd--~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
++-+.+.+.++-..-+ .|.|..|+|+|...++..- .+ + +-+ +++ ....||......|.- .+..-...
T Consensus 102 ~l~~~l~~~~~~~~~~-rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~----~~~s~y~~ 176 (433)
T KOG1401|consen 102 ELEEVLSAVLGKGSAE-RVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSV----TGNSKYGL 176 (433)
T ss_pred HHHHHHHhcccCCCcc-EEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHh----hcccccCC
Confidence 4556666666322111 6999999999998876532 11 1 112 255 556788755555431 12222223
Q ss_pred eccC--Cc----cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc-h---H-HHHHHhhCCcEEEEeccccC-C
Q 006746 246 EFSW--PR----LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP-Y---L-WMRIAQENDWHILIDACALG-P 313 (632)
Q Consensus 246 ~~~~--~~----~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p-l---~-i~~~a~~~g~~vlvDaaq~~-g 313 (632)
|+++ |+ ..-|.+++++.+..++ ..+..|++-.+.-..|...+ - . +.++|+++|+++|.|-.|.+ +
T Consensus 177 ~~~p~~p~v~~~~ynd~t~l~k~~~~h~---~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~g 253 (433)
T KOG1401|consen 177 PFDPIAPDVVTAEYNDSTALEKLFESHK---GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLG 253 (433)
T ss_pred CCCCCCCceeecccCCHHHHHHHHHhCC---CceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCcc
Confidence 3321 11 0126889999998754 23566666666655555532 2 2 45789999999999998875 3
Q ss_pred CCCCCCCCC---CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCC
Q 006746 314 KDMDSFGLS---LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDN 360 (632)
Q Consensus 314 ~~m~~ldls---~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~ 360 (632)
.. ..+-.. ...||.++.. |.+|. .-=+|+..|++++++.+.+.
T Consensus 254 R~-g~~~a~e~~~~~PDI~t~a--K~L~g-GlPigA~~v~~kV~~~i~~~ 299 (433)
T KOG1401|consen 254 RL-GYGWAQEYFGVTPDITTVA--KPLGG-GLPIGATGVRDKVAEMISPG 299 (433)
T ss_pred cc-chHHHHHHhCcCCcceeeh--hhccC-CceeEEEeehHHHHhhcCCC
Confidence 20 111111 1367876654 75543 23489999999998877653
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.055 Score=56.23 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=88.6
Q ss_pred eCCHHHHHHHHHhhCCCCCCCe-EEEe---ccccchhhHHHHHHHHhcC-CEEEEEec-cCCccccCHHHHHHHHHhcCc
Q 006746 195 TANRTSAFKLLAESYPFMSVKN-LLTV---YDYESEAVEAMIRTSEKRG-ARVMSAEF-SWPRLRINSEKLRKMVVSKGK 268 (632)
Q Consensus 195 t~naT~al~lv~~sl~~~~gd~-ilt~---~d~~s~~v~~~~~~a~~~G-~~v~~v~~-~~~~~~i~~~~l~~~i~~~~~ 268 (632)
+-++|.|+.+.++-+.---+++ |.++ .+.| ..+.++.| ..|..-+. +...-.+|.+.+..-|....
T Consensus 105 slsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH-------~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~AP- 176 (410)
T KOG1412|consen 105 SLSGTGALRIAADFLATFYNKNTVYVSNPTWENH-------HAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAP- 176 (410)
T ss_pred eccccchhhhhHHHHHHhcccceeEecCCchhHH-------HHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCC-
Confidence 3478999999887663112344 3222 1222 11336678 34444443 22445678888888887654
Q ss_pred CCCceeEEEEecc-CCCCccccchH-HHHHH---hhCCcEEEEecc-ccCCCCCCCCCCCCC--------CC-cEEEEcc
Q 006746 269 KKKQRGLFVFPLH-SRMTGARYPYL-WMRIA---QENDWHILIDAC-ALGPKDMDSFGLSLV--------RP-DFLICSF 333 (632)
Q Consensus 269 ~~~~~~Lv~~~~~-sn~TG~~~pl~-i~~~a---~~~g~~vlvDaa-q~~g~~m~~ldls~~--------~~-Df~~~S~ 333 (632)
...++++.++ .|+||.-.--+ |..++ +..+.+.+.|.| |.... .++|-+.| +. =|++=||
T Consensus 177 ---e~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfAS--GD~~~DawAiR~fV~~g~e~fv~QSF 251 (410)
T KOG1412|consen 177 ---EGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFAS--GDLDADAWAIRYFVEQGFELFVCQSF 251 (410)
T ss_pred ---CCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhccccc--CCccccHHHHHHHHhcCCeEEEEhhh
Confidence 3356666665 89999987666 76655 567899999986 55443 35555444 32 3666788
Q ss_pred ccccCCCCCceEEEEE
Q 006746 334 YQIFGENPSGFGCLFV 349 (632)
Q Consensus 334 hK~~G~~P~G~G~L~V 349 (632)
-|-||.+-.-+|+|-|
T Consensus 252 aKNfGlYneRvGnltv 267 (410)
T KOG1412|consen 252 AKNFGLYNERVGNLTV 267 (410)
T ss_pred hhhcccccccccceEE
Confidence 9977766667888865
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.015 Score=59.93 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=97.2
Q ss_pred HHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhH---HHH----HHHHhcCCEEEEEecc
Q 006746 176 KKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVE---AMI----RTSEKRGARVMSAEFS 248 (632)
Q Consensus 176 R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~---~~~----~~a~~~G~~v~~v~~~ 248 (632)
.+-.|+.||+...-...-|. |+|.|+..++.++ ++|||++++....|-..+. .|+ ...+..|+..+.+|+.
T Consensus 71 e~vyA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~-LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt 148 (416)
T COG4100 71 ERVYAQVFGAEAALVRPQII-SGTHAIACALFGI-LRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLT 148 (416)
T ss_pred HHHHHHHhccccceeeeeee-cchhHHHHHHHhc-cCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccc
Confidence 34467889986432233333 8899999999998 8999997643322211121 221 2356778999999997
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcc-------ccchH-HHHHHhhC--CcEEEEeccccC-CCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-------RYPYL-WMRIAQEN--DWHILIDACALG-PKDMD 317 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~-------~~pl~-i~~~a~~~--g~~vlvDaaq~~-g~~m~ 317 (632)
+++.+|.+.+++.+.++| +|+.+.- ..|. +-.++ +++..|+. ++.+.||-|-.- -....
T Consensus 149 -~~gkiD~~~v~~~i~~~t------kli~IQR---S~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~E 218 (416)
T COG4100 149 -ADGKIDIQAVKTAISDRT------KLIGIQR---SKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKE 218 (416)
T ss_pred -cCCcccHHHHHHhcCccc------eEEEEEe---ccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccC
Confidence 789999999999998765 7876643 3332 22344 45555653 789999987322 11113
Q ss_pred CCCCCCCCCcEEEEccccccC
Q 006746 318 SFGLSLVRPDFLICSFYQIFG 338 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G 338 (632)
|.+ .++|.++.|.-|--|
T Consensus 219 Pt~---vGaDliAGSLIKNpG 236 (416)
T COG4100 219 PTH---VGADLIAGSLIKNPG 236 (416)
T ss_pred ccc---cchhhhccceeeCCC
Confidence 433 478999999999443
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.2 Score=53.74 Aligned_cols=149 Identities=13% Similarity=0.217 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEecc-ccchhhHHHHHHHHhcCCEEEEEeccCCcc
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYD-YESEAVEAMIRTSEKRGARVMSAEFSWPRL 252 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d-~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~ 252 (632)
+..++|++|+|+.. .|++..+-+ ++..++.+| -++||-+..+.. +++ ...++ ++.+ -.+.+...
T Consensus 143 dlE~~iakF~G~E~---aivYs~gF~-ti~S~ipaf-sKrGDIi~~de~~nfa-Iq~Gl-qlSR---S~i~~Fkh----- 207 (467)
T KOG1358|consen 143 DLEKRIAKFMGTED---AIVYSYGFS-TIESAIPAF-SKRGDIIFVDEAVNFA-IQKGL-QLSR---STISYFKH----- 207 (467)
T ss_pred ccHHHHHHhhCCcc---eeeeccccc-hhhhcchhh-hccCcEEEEehhhhHH-HHHHH-hhhh---heeEEecC-----
Confidence 56788999999964 577765443 344444555 356776544332 111 22221 1222 23334332
Q ss_pred ccCHHHHHHHHHhcC----cCCC---ceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC-------CC
Q 006746 253 RINSEKLRKMVVSKG----KKKK---QRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-------MD 317 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~----~~~~---~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-------m~ 317 (632)
.|.++++..+.+.+ +.++ ..+.+++-.....||.+.|+. |+++..++...+++|-+-+.|.- -.
T Consensus 208 -ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvte 286 (467)
T KOG1358|consen 208 -NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTE 286 (467)
T ss_pred -CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccc
Confidence 36677776654432 1111 256678888999999999999 99999999999999986444320 01
Q ss_pred CCCCCCCCCcEEEEccccccC
Q 006746 318 SFGLSLVRPDFLICSFYQIFG 338 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G 338 (632)
-.+++.-.+|.+++|.--.++
T Consensus 287 H~~v~~~~iDiv~~sm~~ala 307 (467)
T KOG1358|consen 287 HFGVPITDIDIVTASMETALA 307 (467)
T ss_pred cCCCCccceeeeeeccccccc
Confidence 233344567999999877555
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.016 Score=61.70 Aligned_cols=130 Identities=14% Similarity=0.144 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEE
Q 006746 172 ESAMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 172 ~~~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
+.-+|+.+|+|+- ++|+ +|.+|.+++.|++.+..-+--.+.+-|+++. .|+ .+. +.++ ..|...+-
T Consensus 115 v~~vR~~VA~~I~rRDG~p~~p~--dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYP--LYs--Ati~-l~~~~~v~ 187 (475)
T KOG0258|consen 115 VPGVRKHVAEFIERRDGIPADPE--DIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYP--LYS--ATIS-LLGGTQVP 187 (475)
T ss_pred ChhHHHHHHHHHHhccCCCCCHH--HeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCc--hhH--HHHH-HhCCcccc
Confidence 3468888888875 3344 7999999999999999877444555577653 555 222 2222 34554433
Q ss_pred EeccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEecc
Q 006746 245 AEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 245 v~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaa 309 (632)
.-++. ....+|.++|++.+++.. +.-++++.++-..-|+||..+. ++ |++.|++.|+.++-|-+
T Consensus 188 YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEV 256 (475)
T KOG0258|consen 188 YYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEV 256 (475)
T ss_pred eeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHH
Confidence 33432 345689999999998865 3346788888888999999985 56 77889999999999986
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.24 Score=52.58 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=121.7
Q ss_pred CCceEee---cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc
Q 006746 107 SNHTCLD---YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (632)
Q Consensus 107 ~~~vyLD---~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l 183 (632)
+..||.| -.|+|-++..|+.++..= |- + |++. .-+...+..+.+.|
T Consensus 44 Sedv~IDLLTDSGTgams~~qwaamm~G-------------DE-----A-----------Yags--rs~~~L~~avkdif 92 (471)
T COG3033 44 SEDVFIDLLTDSGTGAMTDKQWAAMMRG-------------DE-----A-----------YAGS--RSYYALADAVKDIF 92 (471)
T ss_pred ccceEEEeeccCCcccccHHHHHHHhcc-------------ch-----h-----------hccc--ccHHHHHHHHHHhc
Confidence 4566655 478999999999997541 11 0 1111 11235667778888
Q ss_pred CCCCCCccEEEeCCHHHHHHHHHhhC----CCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCC--------
Q 006746 184 NISENDYGMVFTANRTSAFKLLAESY----PFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWP-------- 250 (632)
Q Consensus 184 ~a~~~ey~vvft~naT~al~lv~~sl----~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~-------- 250 (632)
|-. -++-|.-+-.|=+++...+ ...+|++.+ .+.-|+- .. +.-.+..|+.++-++++..
T Consensus 93 Gfq----~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~Fd-TT---r~h~~~ng~~~~n~~~~ea~d~~~~~p 164 (471)
T COG3033 93 GFQ----YTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFD-TT---RGHIQINGATPRNVYVDEAFDTEVKYP 164 (471)
T ss_pred Cce----eeeeccCCccHHHHHHHHHhhhccccCCccccccccceec-ch---hHHHHhcCCccccccccccccccccCC
Confidence 863 3566777777777766554 134565533 3444442 12 2233668888887766421
Q ss_pred -ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccchH----HHHHHhhCCcEEEEeccccCCC----CCCCCC
Q 006746 251 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL----WMRIAQENDWHILIDACALGPK----DMDSFG 320 (632)
Q Consensus 251 -~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~pl~----i~~~a~~~g~~vlvDaaq~~g~----~m~~ld 320 (632)
.|.+|++.|++.|++-. ..++-.++.+.-+|.. |...+++ ..++|+++++.|+.|+|-.+-. .+..-+
T Consensus 165 FKGd~D~~kLe~lidevG--~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~g 242 (471)
T COG3033 165 FKGNFDLEKLERLIDEVG--ADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPG 242 (471)
T ss_pred CCCccCHHHHHHHHHHhC--cccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcc
Confidence 36789999999998743 2234445555444444 4434443 3578999999999999765521 012222
Q ss_pred CCCC-----------CCcEEEEcccc-ccCCCCCceEEEEEeCCC
Q 006746 321 LSLV-----------RPDFLICSFYQ-IFGENPSGFGCLFVKKST 353 (632)
Q Consensus 321 ls~~-----------~~Df~~~S~hK-~~G~~P~G~G~L~Vr~~~ 353 (632)
-..| -+|.++.|.-| .+- +- -|+|..|++.
T Consensus 243 Yrd~sI~~IarEm~sYaD~~~mS~KKD~lv--nm-GGfl~~~D~~ 284 (471)
T COG3033 243 YRDWSIEEIAREMYSYADGCTMSAKKDGLV--NM-GGFLCFKDDS 284 (471)
T ss_pred cccccHHHHHHHHHhhhhhheeecccccee--cc-ccEEEecCcc
Confidence 3322 45999999999 333 22 2677777764
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.82 E-value=5.3 Score=41.77 Aligned_cols=350 Identities=14% Similarity=0.139 Sum_probs=180.5
Q ss_pred cCCCCceEeecC----CCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 104 LSLSNHTCLDYF----GIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 104 L~~~~~vyLD~a----g~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
+++++.-|||-. -.|---+.|+++....+.+.+ ..++.+ ..++++-+|...
T Consensus 42 fDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~---------------------tN~RFl----hd~lv~cA~~l~ 96 (452)
T KOG1403|consen 42 FDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATIS---------------------TNNRFL----HDELVQCARTLT 96 (452)
T ss_pred eccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhc---------------------ccchhh----HHHHHHHHHHHh
Confidence 555566677643 345566677777655443221 122222 246777777777
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCC-CCeEEEeccccchhhHHHHHHH---HhcCC---E---EEEEecc
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESY-PFMS-VKNLLTVYDYESEAVEAMIRTS---EKRGA---R---VMSAEFS 248 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~-gd~ilt~~d~~s~~v~~~~~~a---~~~G~---~---v~~v~~~ 248 (632)
..+=+.+ .+.|++++++|..++++-- .|.. .|.|++..-||.. +....+.. -.+|. + |+.+|..
T Consensus 97 stlPeLs----vc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGH-l~s~mE~SPYKF~~g~~v~kpd~VHVAPcP 171 (452)
T KOG1403|consen 97 STLPELS----VCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGH-LQSVMEVSPYKFNQGGGVAKPDYVHVAPCP 171 (452)
T ss_pred hcCCCce----EEEEecCCchhhHHHHHHHHhhcccCceEEEechhccc-eeeeeeccceeccCCCCcCCCceeEecCCc
Confidence 7665543 6899999999999876532 2333 3445566555542 22212221 01121 1 2222321
Q ss_pred C-Cc-------------cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H----HHHHhhCCcEEEEecc
Q 006746 249 W-PR-------------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W----MRIAQENDWHILIDAC 309 (632)
Q Consensus 249 ~-~~-------------~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i----~~~a~~~g~~vlvDaa 309 (632)
. -. +..-.+++++.+.+...+...+..|.--.-.+.-|.++|-+ . ....|..|-..+.|-+
T Consensus 172 DvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEV 251 (452)
T KOG1403|consen 172 DVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEV 251 (452)
T ss_pred cccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehh
Confidence 0 00 11223556666654322122222233333445788888865 3 3455778999999998
Q ss_pred ccC-CC---CCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCC
Q 006746 310 ALG-PK---DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCE 385 (632)
Q Consensus 310 q~~-g~---~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~ 385 (632)
|.+ |. ..=.+.+-.+-||.+... |-.|- ..-++++..+++..+.+... |. . |+.
T Consensus 252 QvGFGRvG~hyWafq~y~fiPDIVtmg--KpmGN-GhPVa~VattkeIA~Af~at---gv-~-------YFN-------- 309 (452)
T KOG1403|consen 252 QVGFGRVGSHYWAFQTYNFIPDIVTMG--KPMGN-GHPVAAVATTKEIAQAFHAT---GV-E-------YFN-------- 309 (452)
T ss_pred hhcccccchhhhhhhhhccccchheec--ccCCC-CCeeeEEeccHHHHHHhccc---cc-e-------ehh--------
Confidence 875 21 000111222345655443 52221 12256666666655433321 11 0 110
Q ss_pred CCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHH
Q 006746 386 TEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTM 465 (632)
Q Consensus 386 ~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~ 465 (632)
. .+|. |.+ . ..+|..++.+--++
T Consensus 310 --------T----yGGn-PVs------------------C--------------------------Av~laVm~v~e~E~ 332 (452)
T KOG1403|consen 310 --------T----YGGN-PVS------------------C--------------------------AVGLAVMRVCEDEN 332 (452)
T ss_pred --------c----cCCC-chh------------------H--------------------------HHHHHHHHHHhhhh
Confidence 0 0111 110 0 13444555555678
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEE---EccCCCC----ccCHHHHHHHHHhCCcEE
Q 006746 466 ISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN---VFDWKRE----KIEPVLVQKLADRENISL 538 (632)
Q Consensus 466 I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFn---v~~~~G~----~i~~~~V~kla~~~gI~l 538 (632)
+++|.+...++|...|.+++-.+ ++.|+ -||-=+-+- +.|.+-. ......|.+|-+.++|-+
T Consensus 333 Lq~ha~~vG~~L~~lL~~~k~kh-------~~IGD----vRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLl 401 (452)
T KOG1403|consen 333 LQEHAQQVGEKLEVLLRRLKQKH-------ECIGD----VRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLL 401 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc-------cceec----cccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEE
Confidence 89999999999999998875322 33454 244222111 1222111 111223445555556665
Q ss_pred ccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 539 SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 539 r~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
++ ++....++.+-+...-|+|+++.++..|.+.|.
T Consensus 402 sa--------------------------------------DGPh~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 402 SA--------------------------------------DGPHRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred ec--------------------------------------CCCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 42 223446888888999999999999999988875
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.74 E-value=5.4 Score=42.66 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccCCCCC------CCCCCCC
Q 006746 255 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALGPKDM------DSFGLSL 323 (632)
Q Consensus 255 ~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~g~~m------~~ldls~ 323 (632)
++++++++|.+..+++..+.-+++--+...-|--+- .. +-++++++|+.++||-+|.+|..- .-.+|+
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~- 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD- 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC-
Confidence 356677778765444434444445444455665442 33 667899999999999999885310 234443
Q ss_pred CCCcEEEEc
Q 006746 324 VRPDFLICS 332 (632)
Q Consensus 324 ~~~Df~~~S 332 (632)
.+||++.||
T Consensus 333 ~PpD~vTFS 341 (484)
T KOG1405|consen 333 SPPDVVTFS 341 (484)
T ss_pred CCccceehh
Confidence 478988876
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=85.01 E-value=2.2 Score=40.52 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcC----CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe
Q 006746 173 SAMKKRIMDFLN----ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV 220 (632)
Q Consensus 173 ~~~R~~ia~~l~----a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~ 220 (632)
+.+.+.+.+.+| ++++ .|++|++++.|+.+++..+ ..+||.|++.
T Consensus 99 ~AiA~~l~~~~g~~v~~~pd--~Ivvt~Ga~~al~~l~~~l-~dpGD~VlVp 147 (153)
T PLN02994 99 KAIANFMAEARGGRVKFDAD--MIVLSAGATAANEIIMFCI-ADPGDAFLVP 147 (153)
T ss_pred HHHHHHHHHHhCCCCccchh--heEEcCCHHHHHHHHHHHH-cCCCCEEEEe
Confidence 333344444435 3444 7999999999999999999 7899997754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 632 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 7e-07 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 1e-10
Identities = 80/541 (14%), Positives = 162/541 (29%), Gaps = 146/541 (26%)
Query: 168 ESGLESAMKKRIMDFLNISEND----YGM--VFTANRTSAFK-----LLAESYPFMSVKN 216
+ +S + K +D + +S++ + + + + +L +Y F
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----- 93
Query: 217 LLTVYDYESEAVEAMIRT-SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK---- 271
L++ E M R E+R RL +++ K VS+ +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRD-----------RLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 272 -----QRGLFVFPLHSRMTGA-----------------RYPY--LWMRIAQENDWHILID 307
+ V + + G+ + + W+ + N +++
Sbjct: 143 ALLELRPAKNVL-IDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 308 A----CALGPKDMDSFGLSLVRPDFLICSFYQ---IFGENPSGFGCLFVKKSTVPILVDN 360
+ S I S ++ CL V + N
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--------LLN 252
Query: 361 TSSGMVSLLPAKKQLWLTDEFS-SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL 419
+ + W + F+ SC+ T++ KQ + + +S++ L
Sbjct: 253 VQN---------AKAW--NAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMT-L 298
Query: 420 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMIS---RRGRCLI-N 475
E S+ K + + L++I+ R G N
Sbjct: 299 TP--------DEVKSLLLKYLDCRPQDLPREVL----TTNPRRLSIIAESIRDGLATWDN 346
Query: 476 WLVNALMKLQHPNTEGNALVKIYGPKIR--FDRGPALAFNVFD-------------W--- 517
W KL ++L + + R FD +VF W
Sbjct: 347 WKHVNCDKLTT--IIESSLNVLEPAEYRKMFD-----RLSVFPPSAHIPTILLSLIWFDV 399
Query: 518 KREKIEPVLVQ----KLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 573
+ + V+ + L +++ + S+ I+ K + E + L ++ + N
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVD----HYN 454
Query: 574 NRKDKANLGITVVTAS------LGY-LANFEDVYRLWAFVAQFLDADFVE-KARWRYTAL 625
K + + +G+ L N E R+ F FLD F+E K R TA
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 626 D 626
+
Sbjct: 515 N 515
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 45/406 (11%), Positives = 115/406 (28%), Gaps = 124/406 (30%)
Query: 13 CLCTHGGCCPSPFF--SLSPD------PLHKVSK--SRNTSA--DCR-RDFAAVTASSIF 59
L + F L + P+ + S T + R R + + +F
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---NDNQVF 126
Query: 60 PDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQL---------SLSNHT 110
+ + L+Q+L E +R + + ++
Sbjct: 127 AKYNVSRLQPYLKLRQALLE----------------LRPAKNVLIDGVLGSGKTWVALDV 170
Query: 111 CLDY-----FGIGLF--SYNQLHKQESSP-------SHLRPSLPSQNLDIPFFSVSYKTG 156
CL Y +F + + E+ + P+ + D ++ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSS-NIKLRIH 228
Query: 157 NLKTQLLHGGQESGLESAMKKR---IMDFLNISEN------DYG---MVFTANRTSAFKL 204
+++ +L L+S + ++ N+ + ++ T + L
Sbjct: 229 SIQAELRRL-----LKSKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 205 LAESYPFMSVKNLLTVYDYESEAVE-------------------------AMIRTSEKRG 239
A + +S+ + E ++I
Sbjct: 282 SAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------A 334
Query: 240 ARVMSAEFSWPRLR-INSEKLRKMV---VSKGKKKKQRGLF----VFPLHSRMTGARYPY 291
+ +W + +N +KL ++ ++ + + R +F VFP + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 292 LWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF 337
+W + + + ++ + + L +P S I+
Sbjct: 395 IWFDVIKSDVMVVV--------NKLHKYSLVEKQPKESTISIPSIY 432
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 7e-07
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 17/45 (37%)
Query: 479 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE 523
AL KLQ +L K+Y D PALA +E
Sbjct: 20 QALKKLQ------ASL-KLYAD----DSAPALAIKA------TME 47
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 42/197 (21%)
Query: 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNL-------LTVYDYE 224
++A ++ + D +N G+V A+R LLAE+ ++ D E
Sbjct: 72 DAA-REAVADLVNADPG--GVVLGADRAVLLSLLAEASS----SRAGLGYEVIVSRLDDE 124
Query: 225 SEAVE-AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-S 282
+ + GA+V AE + + + ++ + V S
Sbjct: 125 ANIAPWLRAA--HRYGAKVKWAEVDIETGELPTWQWESLISKSTR-------LVAVNSAS 175
Query: 283 RMTGARYPYLWM-RIAQENDWHILIDACALGP------KDMDSFGLSLVRPDFLICSFYQ 335
G M ++ + +++D A P ++ D+ D + + +
Sbjct: 176 GTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDA--------DVVTVNAHA 227
Query: 336 IFGENPSGFGCLFVKKS 352
G P +F S
Sbjct: 228 WGG--PPIGAMVFRDPS 242
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 632 | |||
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.97 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.97 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.97 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.97 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.97 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.97 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.97 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.96 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.96 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.96 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.96 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.96 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.96 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.95 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.95 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.94 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.94 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.94 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.94 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.94 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.94 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.93 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.93 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.93 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.93 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.92 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.92 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.91 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.91 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.91 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.91 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.91 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.91 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.91 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.9 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.9 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.9 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.9 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.9 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.9 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.9 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.9 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.9 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.9 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.9 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.9 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.9 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.9 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.9 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.89 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.89 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.89 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.89 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.89 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.89 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.89 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.89 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.88 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.88 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.88 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.88 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.88 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.88 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.88 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.88 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.88 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.88 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.88 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.87 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.87 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.87 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.87 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.87 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.87 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.87 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.87 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.87 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.87 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.87 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.87 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.86 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.86 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.86 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.86 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.86 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.86 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.86 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.86 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.86 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.86 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.86 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.86 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.86 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.86 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.86 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.86 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.85 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.85 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.85 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.85 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.85 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.85 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.85 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.85 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.85 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.85 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.84 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.84 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.84 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.84 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.84 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.84 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.84 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.84 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.83 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.83 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.83 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.83 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.83 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.83 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.83 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.83 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.83 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.82 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.82 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.82 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.82 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.81 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.81 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.81 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.81 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.8 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.8 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.8 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.8 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.8 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.8 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.8 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.8 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.79 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.79 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.79 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.79 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.78 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.77 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.77 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.76 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.76 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.76 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.75 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.75 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.75 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.75 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.75 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.75 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.75 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.75 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.74 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.73 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.73 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.73 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.72 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.72 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.72 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.71 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.71 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.7 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.7 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.7 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.7 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.69 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.69 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.69 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.68 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.67 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.67 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.65 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.65 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.65 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.64 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.64 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.64 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.64 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.63 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.63 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.63 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.63 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.63 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.6 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.6 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.38 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.59 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.59 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.58 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.57 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.57 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.56 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.54 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.54 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.54 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.53 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.52 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.5 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.5 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.44 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.42 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.37 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.34 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.72 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.07 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.04 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 98.95 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 98.82 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 98.66 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.0 |
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=367.06 Aligned_cols=348 Identities=10% Similarity=0.073 Sum_probs=253.8
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccc---ccccchhHHHHHHHHHHHHHcC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL---LHGGQESGLESAMKKRIMDFLN 184 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~---~~g~~~~~~~~~~R~~ia~~l~ 184 (632)
.++|||++|.+++|+.|++++..++... .+|+++.+ ..+....++++++|++|+++||
T Consensus 26 ~~~yl~~agpt~~p~~V~~a~~~~~~~~-------------------~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~ 86 (386)
T 3qm2_A 26 AQVFNFSSGPAMLPAEVLKLAQQELCDW-------------------HGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN 86 (386)
T ss_dssp -CCEECCSSSCCCCHHHHHHHTCC------------------------------------------CCHHHHHHHHHHHT
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHhc-------------------cccCccccccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999999998765421 14444421 1233446889999999999999
Q ss_pred CCCCCccEEE-eCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEecc-CCccc-cCHHHHH
Q 006746 185 ISENDYGMVF-TANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFS-WPRLR-INSEKLR 260 (632)
Q Consensus 185 a~~~ey~vvf-t~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~-~~~~~-i~~~~l~ 260 (632)
++ ++++|+| |+|+|+++++++.++ +++||+++ +..++++ .+|+ ..+++.| +|.+++++ .+.+. +++++++
T Consensus 87 ~~-~~~evif~t~~~T~a~n~ai~~l-~~~gd~v~~~~~~~~~--~~~~-~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~ 160 (386)
T 3qm2_A 87 IP-SNYKVLFCHGGGRGQFAGVPLNL-LGDKTTADYVDAGYWA--ASAI-KEAKKYC-APQIIDAKITVDGKRAVKPMRE 160 (386)
T ss_dssp CC-TTEEEEEEESCTTHHHHHHHHHH-CTTCCEEEEEESSHHH--HHHH-HHHTTTS-EEEEEECEEEETTEEEECCGGG
T ss_pred CC-CCceEEEEcCCchHHHHHHHHhc-cCCCCeEEEEeCCHHH--HHHH-HHHHHhC-CeEEEecCcccCCCCCCchHHH
Confidence 95 4468999 699999999999998 68899964 5566765 3664 5578889 99999986 12333 5666666
Q ss_pred HHHHhcCcCCCceeEEEEeccCCCCccc-cchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccC
Q 006746 261 KMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFG 338 (632)
Q Consensus 261 ~~i~~~~~~~~~~~Lv~~~~~sn~TG~~-~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G 338 (632)
.+|+++ ++||+++|++|.||++ .|++ |. +|++++|||+|++|+ .++|+++++ ++++|+||++|
T Consensus 161 ~~l~~~------t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~--~pidv~~~~--~~~~s~hK~lG 225 (386)
T 3qm2_A 161 WQLSDN------AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILS--APLDVSRYG--VIYAGAQKNIG 225 (386)
T ss_dssp CCCCTT------CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTS--SCCCGGGCS--EEEEETTTTTC
T ss_pred hhcCCC------CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCC--CCCCccccC--EEEEecccccC
Confidence 655543 5899999999999997 8998 75 799999999999998 699999875 67799999999
Q ss_pred CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCC
Q 006746 339 ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 418 (632)
Q Consensus 339 ~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt 418 (632)
|.|+|+||+|+++++.+++.... .. + |. ... +.+ .+.||
T Consensus 226 --P~G~g~l~v~~~~~~~~~~~~p~-~~-------~-~~----------------~~~--~~~------------~~~gT 264 (386)
T 3qm2_A 226 --PAGLTLVIVREDLLGKAHESCPS-IL-------D-YT----------------VLN--DND------------SMFNT 264 (386)
T ss_dssp --CTTEEEEEEEGGGCSCCCTTSCG-GG-------C-HH----------------HHH--HC------------------
T ss_pred --CCccEEEEECHHHHhhhcccCCc-HH-------H-HH----------------HHh--hcC------------CCCCC
Confidence 99999999999998877653210 00 0 10 000 111 14678
Q ss_pred cccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEE
Q 006746 419 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI 497 (632)
Q Consensus 419 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~I 497 (632)
+|++.|++|. +||+++.++ |+++|.+|.+.|+++|+++|.++ | .+..
T Consensus 265 p~v~~i~~l~------------------------~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~------~--~~~~ 312 (386)
T 3qm2_A 265 PPTFAWYLSG------------------------LVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS------D--FYRN 312 (386)
T ss_dssp -CCSHHHHHH------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC------S--SEEC
T ss_pred CcHHHHHHHH------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC------C--Cccc
Confidence 9999999998 999999999 89999999999999999999987 3 2332
Q ss_pred ECCCCCCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccc
Q 006746 498 YGPKIRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRK 576 (632)
Q Consensus 498 ygp~~~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 576 (632)
+++ +..|+ ++++|++++. .++...+++ ++++||.++.|..|
T Consensus 313 ~~~--~~~rs~~iv~f~~~~~---~~~~~~~~~-L~~~gI~~~~g~~~-------------------------------- 354 (386)
T 3qm2_A 313 DVA--QANRSRMNVPFQLADN---TLDKVFLEE-SFAAGLHALKGHRV-------------------------------- 354 (386)
T ss_dssp CBC--GGGBCSSEEEEEESSG---GGHHHHHHH-HHHTTEECCBCCTT--------------------------------
T ss_pred CCC--HHHcCceEEEEECCCc---cccHHHHHH-HHHCCCEEeCCCCC--------------------------------
Confidence 222 23454 6999999852 255444544 67789998876322
Q ss_pred ccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 577 DKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 577 ~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.||+|++.+||.|||++|+++|++|...
T Consensus 355 ------~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 355 ------VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 245999999999999999999999998754
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=363.86 Aligned_cols=353 Identities=12% Similarity=0.101 Sum_probs=266.4
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccc---ccccchhHHHHHHHHHHHHHcCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL---LHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~---~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
.--||.+++++.|+.|++++..++... .+|+.+.+ ..+....++++++|++++++||+
T Consensus 13 ~~~~n~at~~~~p~~Vl~a~~~~~~~~-------------------~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~ 73 (377)
T 3e77_A 13 LGTENLYFQSMLPHSVLLEIQKELLDY-------------------KGVGISVLEMSHRSSDFAKIINNTENLVRELLAV 73 (377)
T ss_dssp --CCCEECSCCCCHHHHHHHHHTSSSG-------------------GGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccccccCCCCHHHHHHHHHHHHhc-------------------ccCCccccccCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 346999999999999999998866421 14544431 12344578999999999999999
Q ss_pred CCCCccEEE-eCCHHHHHHHHHhhCCC-CCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHH
Q 006746 186 SENDYGMVF-TANRTSAFKLLAESYPF-MSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKM 262 (632)
Q Consensus 186 ~~~ey~vvf-t~naT~al~lv~~sl~~-~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~ 262 (632)
++ +++|+| |+|+|+++++++.++.. ++||+++ +..++++ ..| .+.+++.|+.++.+++++.. .+++++++..
T Consensus 74 ~~-~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~--~~~-~~~a~~~G~~~~~~~~~~~~-~~~~~~~~~~ 148 (377)
T 3e77_A 74 PD-NYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWS--AKA-AEEAKKFGTINIVHPKLGSY-TKIPDPSTWN 148 (377)
T ss_dssp CT-TEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHH--HHH-HHHHTTTSEEEECSCCCSSS-CSCCCGGGCC
T ss_pred CC-CCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHH--HHH-HHHHHHhCCceEEeccCCCc-CCCCChHHhc
Confidence 63 468999 58999999999999843 3489965 5567775 366 46778899988888887443 3455555444
Q ss_pred HHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 263 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 263 i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
+++ +++||+++|++|.||+++|+ +++++|++++||++|++|+ .++|+++++ ++++|+||++| |.
T Consensus 149 i~~------~t~lV~~~h~et~tG~~~pi----i~~~~~~~~~vD~~q~~g~--~~id~~~~~--~~~~s~~K~~g--p~ 212 (377)
T 3e77_A 149 LNP------DASYVYYCANETVHGVEFDF----IPDVKGAVLVCDMSSNFLS--KPVDVSKFG--VIFAGAQKNVG--SA 212 (377)
T ss_dssp CCT------TCSCEEEESEETTTTEECSS----CCCCTTCCEEEECTTTTTS--SCCCGGGCS--EEEEEGGGTTS--CT
T ss_pred cCC------CccEEEEeCccCchheEchh----hhccCCCEEEEEcccccCC--CCCchhhcC--EEEEecccccC--CC
Confidence 443 45899999999999999998 4788999999999999998 699998876 68999999998 99
Q ss_pred ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccc
Q 006746 343 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 422 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~ 422 (632)
|+|+||+|+++++.++|...+ +. .|. ... +.+ .+.|||+++
T Consensus 213 G~g~l~~~~~~l~~~~~~~p~-~~--------~~~----------------~~~--~~~------------~~~~Tp~v~ 253 (377)
T 3e77_A 213 GVTVVIVRDDLLGFALRECPS-VL--------EYK----------------VQA--GNS------------SLYNTPPCF 253 (377)
T ss_dssp TCEEEEEETTSCSCCCTTSCG-GG--------CHH----------------HHH--TTT------------TCSSCCCHH
T ss_pred ccEEEEEcHHHHhhccCCCCc-hh--------hHH----------------HHh--hcC------------CCCCCchHH
Confidence 999999999998877653211 10 010 000 111 136889999
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCC
Q 006746 423 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 501 (632)
Q Consensus 423 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~ 501 (632)
.|++|. +||+++.++ |+++|.+|.+.|+++|+++|.++ |.+.+ ++.
T Consensus 254 ~i~~l~------------------------~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~--------~g~~~-~~~ 300 (377)
T 3e77_A 254 SIYVMG------------------------LVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNS--------QGFYV-CPV 300 (377)
T ss_dssp HHHHHH------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS--------TTSEE-CCS
T ss_pred HHHHHH------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc--------CCcee-cCC
Confidence 999998 999999999 79999999999999999999988 55665 343
Q ss_pred CCCCCCc-EEEEEEccCCC-CccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccC
Q 006746 502 IRFDRGP-ALAFNVFDWKR-EKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKA 579 (632)
Q Consensus 502 ~~~~rg~-ivaFnv~~~~G-~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 579 (632)
.+..|++ +++|++.+.++ +-++...+.+ +.++||.++.|.
T Consensus 301 ~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~-l~~~Gi~~~~g~------------------------------------- 342 (377)
T 3e77_A 301 EPQNRSKMNIPFRIGNAKGDDALEKRFLDK-ALELNMLSLKGH------------------------------------- 342 (377)
T ss_dssp CGGGBCSSEEEEEESSTTCCHHHHHHHHHH-HHHTTEESCBCC-------------------------------------
T ss_pred CHHHcCCcEEEEEcCCCCCchhHHHHHHHH-HHHCCcEEeCCC-------------------------------------
Confidence 3345665 69999998432 1122233333 446899987662
Q ss_pred CCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 580 NLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 580 ~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.||+|++.+||.|||++|+++|++|+..
T Consensus 343 -~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 343 -RSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp -TTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -CcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12356999999999999999999999998764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=344.25 Aligned_cols=347 Identities=14% Similarity=0.132 Sum_probs=262.5
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccc---cccchhHHHHHHHHHHHHHcC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL---HGGQESGLESAMKKRIMDFLN 184 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~---~g~~~~~~~~~~R~~ia~~l~ 184 (632)
..+|+=++|.+++|+.|++++..++... .+|+.+.+. .+....++++++|+.++++||
T Consensus 4 ~~~~~f~pgpt~~~~~V~~a~~~~~~~~-------------------~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~ 64 (361)
T 3m5u_A 4 MRKINFSAGPSTLPLEILEQAQKELCDY-------------------QGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE 64 (361)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSG-------------------GGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT
T ss_pred cceEeecCCCCCCcHHHHHHHHHHHHhc-------------------ccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4678888999999999999998765321 145555321 133457899999999999999
Q ss_pred CCCCCccEEE-eCCHHHHHHHHHhhCCCCCCCeE-EEeccccchhhHHHHHHHHhcCCEEEEEeccCCccc-cCHHHHHH
Q 006746 185 ISENDYGMVF-TANRTSAFKLLAESYPFMSVKNL-LTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLR-INSEKLRK 261 (632)
Q Consensus 185 a~~~ey~vvf-t~naT~al~lv~~sl~~~~gd~i-lt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~-i~~~~l~~ 261 (632)
+++ +++|+| |+|+|+++++++.++. +|+++ .+...+++ ..|+ ..++++|++|+++++++.... +++++ +
T Consensus 65 ~~~-~~~v~f~t~~~T~a~n~~~~~~~--~~~~~~~i~~~~~~--~~~~-~~a~~~G~~v~~~~~~~~g~~~~~~~~--~ 136 (361)
T 3m5u_A 65 LND-DYEVLFLQGGASLQFAMIPMNLA--LNGVCEYANTGVWT--KKAI-KEAQILGVNVKTVASSEESNFDHIPRV--E 136 (361)
T ss_dssp CCT-TEEEEEESSHHHHHHHHHHHHHC--CSSCEEEEECSHHH--HHHH-HHHHHTTCCEEEEEECTTTTSCSCCCC--C
T ss_pred CCC-CceEEEEcCcHHHHHHHHHHhcC--CCCeEEEEeCCHHH--HHHH-HHHHHcCCceEEEecccCcCCCcCChh--h
Confidence 973 468999 9999999999999984 67764 23333443 2564 456889999999999854321 34444 3
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCC
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
|+++ ++||+++|++|.||+++|. +++. |++++||++|++|+ .++|++. +||+++|+||++| |
T Consensus 137 -l~~~------t~lv~~~~~e~~tG~~~~~----i~~~-~~~~~vD~~q~~g~--~~id~~~--~d~~~~s~~K~~g--p 198 (361)
T 3m5u_A 137 -FSDN------ADYAYICSNNTIYGTQYQN----YPKT-KTPLIVDASSDFFS--RKVDFSN--IALFYGGVQKNAG--I 198 (361)
T ss_dssp -CCTT------SSEEEEESEETTTTEECSS----CCCC-SSCEEEECGGGTTS--SCCCCTT--EEEEEEETTTTSS--C
T ss_pred -cCCC------CCEEEEeCCCCCcceeCCc----cccc-CCEEEEEcccccCC--CCCCccc--CCEEEEechhccC--C
Confidence 5544 5899999999999999883 3444 99999999999998 6999985 6999999999998 9
Q ss_pred CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCccc
Q 006746 342 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 421 (632)
Q Consensus 342 ~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~ 421 (632)
.|+|+||+|+++++.++|.+..++.+ |. ... +.+ .+.||||+
T Consensus 199 ~G~g~l~~~~~~~~~~~~~~~p~~~~--------~~----------------~~~--~~~------------~~~~Tp~v 240 (361)
T 3m5u_A 199 SGLSCIFIRKDMLERSKNKQIPSMLN--------YL----------------THA--ENQ------------SLFNTPPT 240 (361)
T ss_dssp TTCEEEEEEHHHHHHHHTCCCCGGGC--------HH----------------HHH--HTT------------TCSSCCCH
T ss_pred CccEEEEEcHHHHhhhcCCCCCceee--------hH----------------HHh--hcC------------CCCCCccH
Confidence 99999999999987776532111100 10 000 111 13688999
Q ss_pred chhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC-cEEEEC
Q 006746 422 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNA-LVKIYG 499 (632)
Q Consensus 422 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p-~v~Iyg 499 (632)
+.|++|. +||+++.++ |+++|.+|.+.|+++|+++|.++ + .+++++
T Consensus 241 ~~i~~l~------------------------~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~--------~g~~~~~~ 288 (361)
T 3m5u_A 241 FAIYMFN------------------------LEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS--------NGFYKGHA 288 (361)
T ss_dssp HHHHHHH------------------------HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS--------TTSEEESS
T ss_pred HHHHHHH------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC--------CCeeeccC
Confidence 9999998 999999999 89999999999999999999998 4 346666
Q ss_pred CCCCCCC-CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccccc
Q 006746 500 PKIRFDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 578 (632)
Q Consensus 500 p~~~~~r-g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 578 (632)
+. ..| .++++|++++.. .++. .+.+.++++||.++.|..
T Consensus 289 ~~--~~rs~~ivsf~~~~~~--~~~~-~~~~~L~~~gI~~~~g~~----------------------------------- 328 (361)
T 3m5u_A 289 DK--KDRSLMNVSFNIAKNK--DLEP-LFVKEAEEAGMIGLKGHR----------------------------------- 328 (361)
T ss_dssp CG--GGBCSSEEEEEESSCT--THHH-HHHHHHHHTTEECCBCCT-----------------------------------
T ss_pred CH--HHcCCeEEEEECCCch--hhhH-HHHHHHHHCCCEEecCCC-----------------------------------
Confidence 53 234 569999998621 1453 455667788999887621
Q ss_pred CCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 579 ANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 579 ~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|++.|||.|||++|+++|++|+..
T Consensus 329 ---~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 329 ---ILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ---TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---ccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 1246999999999999999999999998754
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=316.36 Aligned_cols=387 Identities=20% Similarity=0.285 Sum_probs=293.6
Q ss_pred hHHHHHHhhccCcCC----CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccc-ccccc
Q 006746 92 QIDQIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGG 166 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~----~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~-~~~g~ 166 (632)
++..+|+ +||.++. ++.+|||+++.++.|+.+++++.+.+... .+|++.. +.++.
T Consensus 4 ~~~~~r~-~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~ 63 (406)
T 1kmj_A 4 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHG-------------------YAAVHRGIHTLSA 63 (406)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHT-------------------CCCCSSCSSHHHH
T ss_pred CHHHHHH-hCcccccccCCCceEEecCCccCCCCHHHHHHHHHHHHhh-------------------cCCCCCCcchHHH
Confidence 4677886 6998841 13799999999999999999877654321 0233221 11121
Q ss_pred chhHHHHHHHHHHHHHcCC-CCCCccEEEeCCHHHHHHHHHhhCC---CCCCCeEEE-eccccchhhHHHHHHHHhcCCE
Q 006746 167 QESGLESAMKKRIMDFLNI-SENDYGMVFTANRTSAFKLLAESYP---FMSVKNLLT-VYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 167 ~~~~~~~~~R~~ia~~l~a-~~~ey~vvft~naT~al~lv~~sl~---~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
.....+.+.|+.+++++|+ +++ .|+||+|+|+|+.+++.++. +++||+|++ ...|++. ...+...++..|++
T Consensus 64 ~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~-~~~~~~~~~~~g~~ 140 (406)
T 1kmj_A 64 QATEKMENVRKRASLFINARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHAN-IVPWQMLCARVGAE 140 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGG-THHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC--eEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHH-HHHHHHHHHhCCCE
Confidence 2346778999999999999 443 79999999999999999985 789999765 4578763 33335566778999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
++.++.+ +++.+++++|+++|+++ ++++++++.+|+||..+|++ |.++|+++|+++++|+++..|. .+++
T Consensus 141 ~~~~~~~-~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~--~~~~ 211 (406)
T 1kmj_A 141 LRVIPLN-PDGTLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH--HPVD 211 (406)
T ss_dssp EEEECBC-TTSCBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCC
T ss_pred EEEEecC-CCCCcCHHHHHHHhccC------CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCC--CCCc
Confidence 9999987 56778999999988653 58999999999999999999 9999999999999999999886 4667
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-Cceeecccc-cccccccccCCCCCCccccchhhhhh
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAK-KQLWLTDEFSSCETEPEQTSKSKQEK 398 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~e~ 398 (632)
+..+++|++++|+||.|| |.|+|+++++++.++.+.+...| +.+...... ...|. . .+..+
T Consensus 212 ~~~~~~d~~~~s~~K~~g--~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~--- 274 (406)
T 1kmj_A 212 VQALDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWT--K----------APWRF--- 274 (406)
T ss_dssp HHHHTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEEC--C----------TTGGG---
T ss_pred ccccCCCEEEEEchhccC--CCCcEEEEEeHHHHhhcCCcccCCCceeecccccccccC--C----------Cchhc---
Confidence 777789999999999988 77899999999888778766554 222211000 00000 0 00001
Q ss_pred hccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHH
Q 006746 399 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 478 (632)
Q Consensus 399 e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~ 478 (632)
+.|++++..+.++. .+++++.+.+++.+.++.+.+.+++.
T Consensus 275 ----------------~~~~~~~~~~~a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~ 314 (406)
T 1kmj_A 275 ----------------EAGTPNTGGIIGLG------------------------AALEYVSALGLNNIAEYEQNLMHYAL 314 (406)
T ss_dssp ----------------CCSSCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ----------------cCCCCCHHHHHHHH------------------------HHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 23455555666665 78888877799999999999999999
Q ss_pred HHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhh
Q 006746 479 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 558 (632)
Q Consensus 479 ~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~ 558 (632)
+.|.++ |.+++++|. .+++++.|.+.+ ++...+.+.+.++||.++.|..|.......+
T Consensus 315 ~~L~~~--------~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~------ 372 (406)
T 1kmj_A 315 SQLESV--------PDLTLYGPQ---NRLGVIAFNLGK-----HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY------ 372 (406)
T ss_dssp HHHTTS--------TTEEEESCT---TCCSEEEEEETT-----CCHHHHHHHHHHTTEECEEECTTCHHHHHHT------
T ss_pred HHHhcC--------CCeEEecCC---CcCCEEEEEECC-----CCHHHHHHHHhhCCcEEEeccccchHHHHhc------
Confidence 999887 568888764 368999998754 4677777888889999999988886432111
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+ ..+.||+|++.++|.+|++++++.|+++++
T Consensus 373 ---------------------g-~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 403 (406)
T 1kmj_A 373 ---------------------N-VPAMCRASLAMYNTHEEVDRLVTGLQRIHR 403 (406)
T ss_dssp ---------------------T-CSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------C-CCCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 0 136999999999999999999999999875
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=317.14 Aligned_cols=373 Identities=16% Similarity=0.156 Sum_probs=283.7
Q ss_pred hHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHH
Q 006746 92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL 171 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~ 171 (632)
+++.+|+ +||.++ ++.+|||+++.++.|+.+++++.+.+... .+|+++.+.+|......
T Consensus 12 ~~~~~r~-~fp~~~-~~~~~ld~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 70 (406)
T 3cai_A 12 DVARVRG-LHPSLG-DGWVHFDAPAGMLIPDSVATTVSTAFRRS-------------------GASTVGAHPSARRSAAV 70 (406)
T ss_dssp CHHHHHH-TCTTTT-SSCEECBGGGCCCCCHHHHHHHHHHHHHC-------------------CSSSCSSSHHHHHHHHH
T ss_pred cHHHHHH-hhhhcC-CCeEEEeCCCcCCCCHHHHHHHHHHHHhc-------------------CCCCCCccHHHHHHHHH
Confidence 6778886 699994 35899999999999999999977644211 13444333344334577
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC--CCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY--PFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl--~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
++++|+.+++++|++++ .|+||+|+|+++.+++.++ .+++||+|++. .+|++ ....+..++++.|++++.++++
T Consensus 71 ~~~l~~~la~~~g~~~~--~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~-~~~~~~~~~~~~g~~v~~v~~~ 147 (406)
T 3cai_A 71 LDAAREAVADLVNADPG--GVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEA-NIAPWLRAAHRYGAKVKWAEVD 147 (406)
T ss_dssp HHHHHHHHHHHHTCCGG--GEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGG-GTHHHHHHHHHHBCEEEEECCC
T ss_pred HHHHHHHHHHHhCCCCC--eEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHH-HHHHHHHHHHhcCCeEEEEecC
Confidence 88999999999999754 7999999999999999988 57889997654 57776 3444455556679999999987
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
..++.+++++|+++|+++ +++|++++.+|+||..+|++ |.++|+++|+++++|++|..|. .++++..+++|
T Consensus 148 ~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d 219 (406)
T 3cai_A 148 IETGELPTWQWESLISKS------TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY--RLLDIRETDAD 219 (406)
T ss_dssp TTTCCCCGGGHHHHCCTT------EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTT--CCCCHHHHCCS
T ss_pred cccCCcCHHHHHHHhCCC------ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCCCchhcCCC
Confidence 456778999999988653 58999999999999999999 9999999999999999999876 46777777899
Q ss_pred EEEEccccccCCCCCceE-EEEEeCCCccccCCCC--CCCceeecccccccccccccCCCCCCccccchhhhhhhccccC
Q 006746 328 FLICSFYQIFGENPSGFG-CLFVKKSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 404 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G-~L~Vr~~~~~~L~~~~--~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~ 404 (632)
++++|+||++| |. +| +++++++.++.+++.. +|+.. +..+
T Consensus 220 ~~~~s~~K~~g--~~-~G~~~~~~~~~~~~l~~~~~~~~~~~-------------------------~~~~--------- 262 (406)
T 3cai_A 220 VVTVNAHAWGG--PP-IGAMVFRDPSVMNSFGSVSTNPYATG-------------------------PARL--------- 262 (406)
T ss_dssp EEEEEGGGGTS--CS-CEEEEESCHHHHHTSCCCCSCTTCCG-------------------------GGGG---------
T ss_pred EEEeehhhhcC--CC-cCeEEEEehHHHhhcCCcccCCCCCc-------------------------cccc---------
Confidence 99999999998 75 88 9999988776665532 11100 0001
Q ss_pred CCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC--------------HHHHHHHH
Q 006746 405 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG--------------LTMISRRG 470 (632)
Q Consensus 405 f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G--------------l~~I~~r~ 470 (632)
+.|+++.+.+.++. .+++.+.++| ++.+.++.
T Consensus 263 ----------~~~t~~~~~~~a~~------------------------~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 308 (406)
T 3cai_A 263 ----------EIGVHQFGLLAGVV------------------------ASIEYLAALDESARGSRRERLAVSMQSADAYL 308 (406)
T ss_dssp ----------CCSCCCHHHHHHHH------------------------HHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ----------cCCCccHHHHHHHH------------------------HHHHHHHHhccccccchhhhhhhhHHHHHHHH
Confidence 13445555566665 7888887766 78999999
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHh
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~ 550 (632)
+.+.+++.+.|.++ |.+++++|. ..+++++.|.+.+ ++...+.+.+.++||.++.|. +.. ...
T Consensus 309 ~~~~~~l~~~L~~~--------~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~L~~~gi~v~~g~-~~~-~~~ 371 (406)
T 3cai_A 309 NRVFDYLMVSLRSL--------PLVMLIGRP--EAQIPVVSFAVHK-----VPADRVVQRLADNGILAIANT-GSR-VLD 371 (406)
T ss_dssp HHHHHHHHHHHHTC--------TTEEECCCC--SSBCSEEEEEETT-----BCHHHHHHHHHHTTEECEECC-SCH-HHH
T ss_pred HHHHHHHHHHHhcC--------CCeEEcCCc--cccCCEEEEEECC-----cCHHHHHHHHHHCCcEEecCC-hHH-HHH
Confidence 99999999999987 668888774 2467789998875 566777776677899999886 111 100
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
.+ + ...+.+.||+|++.+++.|||+++++.|+++
T Consensus 372 ~~----------g---------------~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 372 VL----------G---------------VNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp HH----------T---------------TTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred Hc----------C---------------CCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 00 0 0012468999999999999999999998753
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=308.17 Aligned_cols=390 Identities=18% Similarity=0.252 Sum_probs=292.2
Q ss_pred hhHHHHHHhhccCcCCCC------ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc-ccc
Q 006746 91 YQIDQIRAKEYYQLSLSN------HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLL 163 (632)
Q Consensus 91 ~~~d~iR~~ef~~L~~~~------~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s-~~~ 163 (632)
..+..+|+ +||.+ ++ .+|||++..++.|+.+++++.+.+... .+|++. ...
T Consensus 8 ~~~~~~r~-~f~~~--~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~ 65 (420)
T 1t3i_A 8 SLAATVRQ-DFPIL--NQEINGHPLVYLDNAATSQKPRAVLEKLMHYYEND-------------------NANVHRGAHQ 65 (420)
T ss_dssp CHHHHHGG-GCGGG--SCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHT-------------------CCCC--CCSH
T ss_pred HHHHHHHH-hCCcc--ccccCCCceEEecCCccCCCCHHHHHHHHHHHHhc-------------------cCCCCcccch
Confidence 35567775 69988 44 799999999999999999876644211 123331 222
Q ss_pred cccchhHHHHHHHHHHHHHcCC-CCCCccEEEeCCHHHHHHHHHhhCC---CCCCCeEEEe-ccccchhhHHHHHHHHhc
Q 006746 164 HGGQESGLESAMKKRIMDFLNI-SENDYGMVFTANRTSAFKLLAESYP---FMSVKNLLTV-YDYESEAVEAMIRTSEKR 238 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a-~~~ey~vvft~naT~al~lv~~sl~---~~~gd~ilt~-~d~~s~~v~~~~~~a~~~ 238 (632)
|+......+.+.|+.+++++|. +++ .|+||+|+|+|+.+++.++. +++||+|++. ..|++. ...+...++..
T Consensus 66 y~~~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~-~~~~~~~~~~~ 142 (420)
T 1t3i_A 66 LSVRATDAYEAVRNKVAKFINARSPR--EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSN-LVPWQMVAAKT 142 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGG-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC--eEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHH-HHHHHHHHHhc
Confidence 4432346678999999999999 543 79999999999999999983 7889997654 577763 33334566778
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCC
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMD 317 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~ 317 (632)
|++++.++.+ .++.+++++|+++|+++ +++|++++.+|+||..+|++ |.++|+++|+++++|+++..+. .
T Consensus 143 g~~~~~v~~~-~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~ 213 (420)
T 1t3i_A 143 GAVLKFVQLD-EQESFDLEHFKTLLSEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH--Y 213 (420)
T ss_dssp CCEEEEECBC-TTSSBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT--S
T ss_pred CcEEEEeccC-CCCCcCHHHHHHhhCCC------ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCC--c
Confidence 9999999987 66779999999988653 58999999999999999999 9999999999999999999886 3
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhh
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
++++..+++|++++|+||++| |.|+|+++++++.++.+.+...+ +...........|. . . +..+
T Consensus 214 ~~~~~~~~~di~~~s~sK~~~--~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~-----~~~~- 278 (420)
T 1t3i_A 214 PLDVQLIDCDWLVASGHKMCA--PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTG--E-----L-----PHKF- 278 (420)
T ss_dssp CCCHHHHTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEEC--C-----T-----TGGG-
T ss_pred cCchhhcCCCEEEEehhhhcC--CCceEEEEEchHHHhhcCceecCCCccccccccccCCC--C-----c-----hhhc-
Confidence 567777789999999999988 77899999999887777665443 22221100000000 0 0 0001
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
..|++++..+.++. .+|+++.+.|++.+.++.+.+.++
T Consensus 279 ------------------~~~~~~~~~~~a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~ 316 (420)
T 1t3i_A 279 ------------------EAGTPAIAEAIALG------------------------AAVDYLTDLGMENIHNYEVELTHY 316 (420)
T ss_dssp ------------------CCSSCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ------------------cCCCccHHHHHHHH------------------------HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 12344455555554 578888878999999999999999
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCC-CCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~-~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
+.+.|.++ |.++++.|.... .+++++.|.+.+ ++...+.+.+.++||.++.|..|.......+
T Consensus 317 l~~~L~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~--- 380 (420)
T 1t3i_A 317 LWQGLGQI--------PQLRLYGPNPKHGDRAALASFNVAG-----LHASDVATMVDQDGIAIRSGHHCTQPLHRLF--- 380 (420)
T ss_dssp HHHHHHTC--------TTEEEESCCGGGSCBCSEEEEEETT-----BCHHHHHHHHHTTTEECBCSCTTCHHHHHHT---
T ss_pred HHHHHHhC--------CCeEEeCCCccccccCCEEEEEECC-----CCHHHHHHHHHHCCeEEeeccccchHHHHhc---
Confidence 99999987 568888874211 358999998764 4667777888889999999988876432111
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ ..+.||+|++.+++.+||+++++.|+++++.
T Consensus 381 ------------------------g-~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 381 ------------------------D-ASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp ------------------------T-CCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------C-CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 1468999999999999999999999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=307.14 Aligned_cols=367 Identities=17% Similarity=0.141 Sum_probs=272.4
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
.||||+++.++.|+.+++++.+.+... .+|+++.+.++....+.++++|+.+++++|++++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 61 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTES-------------------FGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG 61 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTS-------------------CCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhh-------------------cCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 379999999999999999987654321 1344443333334467889999999999999864
Q ss_pred CccEEEeCCHHHHHHHHHhhCCC---CCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 189 DYGMVFTANRTSAFKLLAESYPF---MSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~~---~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
.|+||+|+|+|+.+++.++.+ ++||+|++. .+|++ .. .....+++.|++++.++++ +++.+|+++|+++++
T Consensus 62 --~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~-~~-~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~ 136 (382)
T 4hvk_A 62 --TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMS-VI-NPAKFLQKQGFEVEYIPVG-KYGEVDVSFIDQKLR 136 (382)
T ss_dssp --EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHH-HH-HHHHHHHHTTCEEEEECBC-TTSCBCHHHHHHHCC
T ss_pred --eEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHH-HH-HHHHHHHhcCCEEEEeccC-CCCCcCHHHHHHHhc
Confidence 799999999999999999854 889997754 57775 22 2233456789999999998 677899999999987
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 343 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G 343 (632)
++ ++++++++.+|+||...|++ |.++|+++|+ +++|+++..|. .++++..+++|++++|+||++| |.|
T Consensus 137 ~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~g--~~g 205 (382)
T 4hvk_A 137 DD------TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQ--IEVDVEKIGADMLTISSNDIYG--PKG 205 (382)
T ss_dssp TT------EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTT--BCCCHHHHTCSEEEEESGGGTS--CTT
T ss_pred cC------ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCC--CCCCchhcCCCEEEEeHHHhcC--CCc
Confidence 54 48999999999999999999 9999999999 99999998886 4677777789999999999988 889
Q ss_pred eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 344 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 344 ~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
+|+++++++. .+.+...+|... ..+ +.++++.+.
T Consensus 206 ~g~~~~~~~~--~~~~~~~~~~~~-------------------------~~~-------------------~~~~~~~~~ 239 (382)
T 4hvk_A 206 VGALWIRKEA--KLQPVILGGGQE-------------------------NGL-------------------RSGSENVPS 239 (382)
T ss_dssp CEEEEEETTC--CCCCSSCSSCTG-------------------------GGT-------------------SCSCCCHHH
T ss_pred eEEEEEcCcc--CcCcccccCCCc-------------------------Ccc-------------------ccCCcCHHH
Confidence 9999999876 455444331100 000 134445555
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 503 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~ 503 (632)
+.++. .++++.. .+++.+.++.+.+.+++.+.|.++ |.++++++..
T Consensus 240 ~~~~~------------------------~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~~- 285 (382)
T 4hvk_A 240 IVGFG------------------------KAAEITA-MEWREEAERLRRLRDRIIDNVLKI--------EESYLNGHPE- 285 (382)
T ss_dssp HHHHH------------------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTS--------TTEEECSCSS-
T ss_pred HHHHH------------------------HHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcC--------CCeEEeCCcc-
Confidence 56665 7777665 378999999999999999999876 6788888752
Q ss_pred CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCC
Q 006746 504 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 583 (632)
Q Consensus 504 ~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
...+.++.|.+.+ ++...+.+.+.++||.++.|..|........ ..+... +. . .....
T Consensus 286 ~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~---g~----~-----~~~~~ 343 (382)
T 4hvk_A 286 KRLPNNVNVRFSY-----IEGESIVLSLDMAGIQASTGSACSSKTLQPS-----HVLMAC---GL----K-----HEEAH 343 (382)
T ss_dssp SBCTTEEEEEETT-----CCHHHHHHHHHHTTCBCBCC--------CCC-----HHHHHT---TC----C-----HHHHH
T ss_pred ccCCCEEEEEECC-----CCHHHHHHHHHHCCEEEeeCCccCCCCCcch-----HHHHHc---CC----C-----hhhcC
Confidence 2234689998876 5677777777788999999988876532110 001000 00 0 00114
Q ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 584 TVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 584 ~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.||+|++.++|.|||+++++.|++++..
T Consensus 344 ~~iRl~~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 344 GTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998865
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=320.64 Aligned_cols=393 Identities=12% Similarity=0.104 Sum_probs=281.1
Q ss_pred HHHHHHhhccCcC--------------CCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccc
Q 006746 93 IDQIRAKEYYQLS--------------LSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNL 158 (632)
Q Consensus 93 ~d~iR~~ef~~L~--------------~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~ 158 (632)
+..+|+ +|+... .++.+|||+++.|+.|+.+.+++...+..+ .. ...+.
T Consensus 39 l~~~r~-~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l~~~---------~~-------~~~~~ 101 (465)
T 3e9k_A 39 LRHFRE-CFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKW---------AK-------IAAYG 101 (465)
T ss_dssp TGGGGG-GEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHHHHH---------HH-------HGGGG
T ss_pred HHHHHH-hcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHHHHH---------Hh-------hCCcc
Confidence 445665 587653 126799999999999999977765543211 00 00000
Q ss_pred ccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC--CCCCCCeEEE-eccccchhhHHHHHHH
Q 006746 159 KTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY--PFMSVKNLLT-VYDYESEAVEAMIRTS 235 (632)
Q Consensus 159 ~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl--~~~~gd~ilt-~~d~~s~~v~~~~~~a 235 (632)
+... +. ...++.+++|+++++++|++++ +|+||+|+|+++++++.++ |..++++|++ ...|++....+ ...+
T Consensus 102 ~~~~-~~-~~~~~~~~l~~~la~~~g~~~~--~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~-~~~~ 176 (465)
T 3e9k_A 102 HEVG-KR-PWITGDESIVGLMKDIVGANEK--EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAI-ESQL 176 (465)
T ss_dssp GTSS-SS-CGGGTTHHHHGGGHHHHTCCGG--GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHH-HHHH
T ss_pred cccC-Cc-cHHHhHHHHHHHHHHHcCCCcC--CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHH-HHHH
Confidence 0000 00 1124556789999999999865 7999999999999999998 4445666765 45787643434 4456
Q ss_pred HhcCCEE-----EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecc
Q 006746 236 EKRGARV-----MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 236 ~~~G~~v-----~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaa 309 (632)
+..|+++ ..++.+ .++.++.++|+++|++.+ +++++|++++++|.||..+|++ |.++|+++|+++++|++
T Consensus 177 ~~~G~~~~~~~v~~~~~~-~~~~~d~~~l~~~i~~~~---~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a 252 (465)
T 3e9k_A 177 QLHGLNIEESMRMIKPRE-GEETLRIEDILEVIEKEG---DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLA 252 (465)
T ss_dssp HHTTCCHHHHEEEECCCT-TCSSCCHHHHHHHHHHHG---GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCcceeeeEEEecCC-CCCccCHHHHHHHHHhcC---CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhh
Confidence 7789875 333544 567789999999997431 2469999999999999999999 99999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEcccccc-CCCCCceEEEEEeCCCccccCCCCCC--CceeecccccccccccccCCCCC
Q 006746 310 ALGPKDMDSFGLSLVRPDFLICSFYQIF-GENPSGFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 310 q~~g~~m~~ldls~~~~Df~~~S~hK~~-G~~P~G~G~L~Vr~~~~~~L~~~~~g--G~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
|++|. .++++..+++||+++|+||++ |. |.|+|+++++++.++.+.+...| |.-.. ..+. ... .+
T Consensus 253 ~~~g~--~~~~~~~~~~D~~~~s~~K~l~~g-p~~~g~l~~~~~~~~~~~~~~~g~~~~~~~----~~~~-~~~----~~ 320 (465)
T 3e9k_A 253 HAVGN--VELYLHDWGVDFACWCSYKYLNAG-AGGIAGAFIHEKHAHTIKPALVGWFGHELS----TRFK-MDN----KL 320 (465)
T ss_dssp TTTTT--SCCCHHHHTCCEEEECSSSTTCCC-TTCCCEEEECGGGTTTSCCSSCCGGGBCHH----HHTT-CCS----CC
T ss_pred hhcCC--cCCchhhcCCCEEEECcccccccC-CCceEEEEEcHHHHhhcCCcccCccCCCCC----cccc-cCC----Cc
Confidence 99997 688998999999999999977 33 88999999999998877766444 11000 0000 000 00
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
... .++ .-.+.||+++..+.++. ++++.+...|++.+
T Consensus 321 ~~~----------------~~~---~~~~~gt~~~~~~~a~~------------------------aal~~~~~~~~~~~ 357 (465)
T 3e9k_A 321 QLI----------------PGV---CGFRISNPPILLVCSLH------------------------ASLEIFKQATMKAL 357 (465)
T ss_dssp CBC----------------SSG---GGGCCSCCCHHHHHHHH------------------------HHHHHHHHHCHHHH
T ss_pred CcC----------------CCh---HHhccCCccHHHHHHHH------------------------HHHHHHHHcCHHHH
Confidence 000 000 01246778888888887 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCC--CCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccC
Q 006746 467 SRRGRCLINWLVNALMKLQHP--NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLH 544 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~--~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c 544 (632)
.+|.+.+.+++.+.|.++... ...+.+.+++++|.+...++++++|.+.. +...+.+.+.++||.++.+
T Consensus 358 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~------~~~~l~~~L~~~Gi~v~~~--- 428 (465)
T 3e9k_A 358 RKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV------PNKDVFQELEKRGVVCDKR--- 428 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC------TTCCHHHHHHTTTEECEEE---
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC------CHHHHHHHHHHCCEEEecC---
Confidence 999999999999999986210 00012568999987555679999998862 2234555555679987511
Q ss_pred ChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 545 HIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..++||+|+ ++++|++||+++++.|++.++.
T Consensus 429 -------------------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 429 -------------------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp -------------------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred -------------------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 246999999 8999999999999999998875
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=297.55 Aligned_cols=367 Identities=17% Similarity=0.133 Sum_probs=269.7
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
.+|||+++.++.|+.+++++.+.+... .+|+++.+.++....+.++++|+.+++++|++++
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~ 61 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTES-------------------FGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG 61 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTS-------------------CCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHhc-------------------cCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 379999999999999999987654321 1344432222323457888999999999999764
Q ss_pred CccEEEeCCHHHHHHHHHhhCC---CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 189 DYGMVFTANRTSAFKLLAESYP---FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~---~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
.|+||+|+|+|+.+++.++. .++||+|++. ..|++ .... ...++..|++++.++++ +++.+|+++|+++|+
T Consensus 62 --~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~ 136 (382)
T 4eb5_A 62 --TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMS-VINP-AKFLQKQGFEVEYIPVG-KYGEVDVSFIDQKLR 136 (382)
T ss_dssp --EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHH-HHHH-HHHHTTTTCEEEEECBC-TTSCBCHHHHHHHCC
T ss_pred --eEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchH-HHHH-HHHHHhCCcEEEEeccC-CCCccCHHHHHHHhc
Confidence 79999999999999999984 2789997754 56765 2232 33445689999999997 567899999999886
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 343 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G 343 (632)
++ ++++++++.+|+||..+|++ |+++|+++|++ ++|+++..|. .++++..+++|++++|+||++| |.|
T Consensus 137 ~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~--~~~~~~~~~~di~~~s~sK~~g--~~g 205 (382)
T 4eb5_A 137 DD------TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQ--IEVDVEKIGADMLTISSNDIYG--PKG 205 (382)
T ss_dssp TT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTT--BCCCHHHHTCSEEEEETGGGTC--CSS
T ss_pred CC------CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCC--cccCccccCCCEEEeehHHhcC--CCc
Confidence 53 58999999999999999999 99999999999 9999998876 4667766789999999999988 889
Q ss_pred eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 344 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 344 ~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
+|+++++++. .+.+...+|... . .+ ..|+++.+.
T Consensus 206 ~G~~~~~~~~--~l~~~~~~~~~~------------~-------------~~-------------------~~~~~~~~~ 239 (382)
T 4eb5_A 206 VGALWIRKEA--KLQPVILGGGQE------------N-------------GL-------------------RSGSENVPS 239 (382)
T ss_dssp CEEEEEETTC--CCCCSSCSSCTG------------G-------------GT-------------------SCSCCCHHH
T ss_pred eEEEEEcccc--ccCceecCCCcc------------c-------------cc-------------------cCCCccHHH
Confidence 9999999874 244333221100 0 00 123344444
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 503 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~ 503 (632)
+.++. .+|+.+.+ +++.+.++.+.+.+++.+.|.++ |.+++++|..
T Consensus 240 ~~~~~------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~~- 285 (382)
T 4eb5_A 240 IVGFG------------------------KAAEITAM-EWREEAERLRRLRDRIIDNVLKI--------EESYLNGHPE- 285 (382)
T ss_dssp HHHHH------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTS--------TTEEECSCSS-
T ss_pred HHHHH------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhC--------CCeEEeCCcc-
Confidence 45554 78887765 68999999999999999999886 6688887642
Q ss_pred CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCC
Q 006746 504 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 583 (632)
Q Consensus 504 ~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
...++++.|.+.+ ++...+.+.+.++||.++.|..|.+...... .++... +. . ...+.
T Consensus 286 ~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~---g~---~------~~~~~ 343 (382)
T 4eb5_A 286 KRLPNNVNVRFSY-----IEGESIVLSLDMAGIQASTGSACSSKTLQPS-----HVLMAC---GL---K------HEEAH 343 (382)
T ss_dssp SBCTTEEEEEETT-----SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCC-----HHHHHT---TC---C------HHHHT
T ss_pred cCCCCEEEEEeCC-----cCHHHHHHHHHHCCEEEeccccccCCCCccc-----HHHHHc---CC---C------hhccC
Confidence 2247788898864 4666676666678999999987765321100 011100 00 0 00124
Q ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 584 TVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 584 ~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.||+|++.++|.+||+++++.|+++++.
T Consensus 344 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 344 GTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=291.06 Aligned_cols=376 Identities=13% Similarity=0.126 Sum_probs=275.4
Q ss_pred hHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHH
Q 006746 92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL 171 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~ 171 (632)
.++++|+ +|+.+ ++.+|||+++.++.|+.+++++.+.+... ...++.++..|.. ....
T Consensus 3 ~~~~~r~-~f~~~--~~~i~l~~~~~~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~y~~-~~~~ 60 (390)
T 1elu_A 3 MITPSLH-QFPGL--ANKTYFNFGGQGILPTVALEAITAMYGYL------------------QENGPFSIAANQH-IQQL 60 (390)
T ss_dssp --------CCGGG--TTSEECCTTTCCCCCHHHHHHHHHHHHHH------------------HHHCSSSHHHHHH-HHHH
T ss_pred chHHHHH-hcCCC--CCeEEecCCccCCCCHHHHHHHHHHHHHH------------------hccCCcchhhHHH-HHHH
Confidence 4677885 69977 67999999999999999999876643210 0012211111211 1356
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC-
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW- 249 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~- 249 (632)
+.+.|+.|++++|++++ .|+||+|+|+|+.+++.++.+++||+|++. ..|++ ....+...++..|++++.++.+.
T Consensus 61 ~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~ 137 (390)
T 1elu_A 61 IAQLRQALAETFNVDPN--TITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPG-IIAIVQAIAARFGITYRFFPVAAT 137 (390)
T ss_dssp HHHHHHHHHHHTTSCGG--GEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHH-HHHHHHHHHHHHCCEEEEECCGGG
T ss_pred HHHHHHHHHHHcCCCHH--HEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccH-HHHHHHHHHHHhCcEEEEEcCCCC
Confidence 78999999999999765 799999999999999999988899997754 56765 33333455677899999998863
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHh----hCCcEEEEeccccCCCCCCCCCCCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQ----ENDWHILIDACALGPKDMDSFGLSLV 324 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~----~~g~~vlvDaaq~~g~~m~~ldls~~ 324 (632)
.++.+++++|++.|++ +++++++++.+|+||..+|++ |.++|+ ++|+++++|.++..|. .++++..+
T Consensus 138 ~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~--~~~~~~~~ 209 (390)
T 1elu_A 138 LNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS--LPLDFSRL 209 (390)
T ss_dssp SSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT--BCCCTTTS
T ss_pred CCccchHHHHHHhcCC------CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC--cCCChhhc
Confidence 3556888999887764 358999999999999999999 999999 9999999999998886 47778788
Q ss_pred CCcEEEEcccc-ccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhccc
Q 006746 325 RPDFLICSFYQ-IFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 402 (632)
Q Consensus 325 ~~Df~~~S~hK-~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt 402 (632)
++|++++|+|| ++| |.|+|+++++++.++.+.+...| +.+....... .|...+ ....+
T Consensus 210 ~~d~~~~s~~K~~~~--~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~----------~~~~~------- 269 (390)
T 1elu_A 210 EVDYYAFTGHKWFAG--PAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGE-PTGWAE----------GGKRF------- 269 (390)
T ss_dssp CCSEEEEESSSTTCC--CTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSC-EEEECS----------GGGGG-------
T ss_pred CCCEEEccccccccC--CCceEEEEECHHhHhhcCCccccCCcccccccCc-cccccc----------chHhh-------
Confidence 99999999999 666 77999999999998888776555 3322110000 000000 00000
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G-l~~I~~r~~~L~~~L~~~L 481 (632)
..|+++.+.+.++. .+|+.+...| ++.+.++.+.+.+++.+.|
T Consensus 270 ------------~~~~~~~~~~~a~~------------------------~al~~l~~~~~~~~~~~~~~~~~~~l~~~L 313 (390)
T 1elu_A 270 ------------EVATSAYPQYAGLL------------------------AALQLHQRQGTAEERYQAICQRSEFLWRGL 313 (390)
T ss_dssp ------------CCSCCCHHHHHHHH------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCCCCHHHHHHHH------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 13445555555554 7888887777 9999999999999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE 561 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~ 561 (632)
.++ |.+++++|. ..+++++.|.+.+ | ++...+.+.+.++||.++.|.
T Consensus 314 ~~~--------~g~~~~~~~--~~~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~~~------------------- 360 (390)
T 1elu_A 314 NQL--------PHVHCLATS--APQAGLVSFTVDS--P--LGHRAIVQKLEEQRIYLRTIA------------------- 360 (390)
T ss_dssp HHS--------TTEEESCSS--CCSSSEEEEEECS--S--SCHHHHHHHHHHTTEECEEET-------------------
T ss_pred Hhc--------CCcEEecCc--cccccEEEEEcCC--C--CCHHHHHHHHHHCCEEEEecC-------------------
Confidence 987 568888763 3468899998752 1 456666665667899987551
Q ss_pred hhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 562 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
..+.||+|+++++|.+|++++++.|+++
T Consensus 361 --------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 --------------------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp --------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred --------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 1258999999999999999999998764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=299.54 Aligned_cols=385 Identities=15% Similarity=0.144 Sum_probs=267.9
Q ss_pred HHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHH
Q 006746 96 IRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAM 175 (632)
Q Consensus 96 iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~ 175 (632)
.|..+|+++ .+.+|||+++.++.|+.+++++.+.+... .+||++.+.++....+.++++
T Consensus 8 ~~~~~~~~~--~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l 66 (432)
T 3a9z_A 8 ARGSVESPP--NRKVYMDYNATTPLEPEVIQAVTEAMKEA-------------------WGNPSSSYVAGRKAKDIINTA 66 (432)
T ss_dssp ------------CCEECBTTTCCCCCHHHHHHHHHHHHHC-------------------CSCTTCSSHHHHHHHHHHHHH
T ss_pred ccccccCCC--CCcEEeeCCccCCCCHHHHHHHHHHHHHh-------------------cCCCccCcHHHHHHHHHHHHH
Confidence 456689988 78999999999999999999977643211 133433332333345778899
Q ss_pred HHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--C-----CCCC-------------eEE-EeccccchhhHHHHHH
Q 006746 176 KKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--F-----MSVK-------------NLL-TVYDYESEAVEAMIRT 234 (632)
Q Consensus 176 R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--~-----~~gd-------------~il-t~~d~~s~~v~~~~~~ 234 (632)
|+.+++++|++++ .|+||+|+|+|+.+++.++. | ++|| +|+ +..+|++ ....+..+
T Consensus 67 ~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s-~~~~~~~~ 143 (432)
T 3a9z_A 67 RASLAKMIGGKPQ--DIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDS-IRLPLEHL 143 (432)
T ss_dssp HHHHHHHHTCCGG--GEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHH-HHHHHHHH
T ss_pred HHHHHHHcCCCcC--eEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchh-HHHHHHHH
Confidence 9999999999765 79999999999999998873 1 3674 444 3456766 33444566
Q ss_pred HHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCC----------cE
Q 006746 235 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEND----------WH 303 (632)
Q Consensus 235 a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g----------~~ 303 (632)
++..|++++.+++++.++.+++++|+++|+++ ++++++++.+|+||..+|++ |.++|+++| ++
T Consensus 144 ~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 217 (432)
T 3a9z_A 144 VEDQVAEVTFVPVSKVNGQVEVEDILAAVRPT------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVL 217 (432)
T ss_dssp HHTTSCEEEEECCCTTTSSCCHHHHHHTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCE
T ss_pred HHhcCcEEEEEecCcccCCcCHHHHHHhccCC------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceE
Confidence 67789999999987446789999999888653 58999999999999999999 999999999 99
Q ss_pred EEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCC-ccccCCCCCCCceeecccccccccccccC
Q 006746 304 ILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST-VPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 304 vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~-~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
+++|+++..+. .++++..+++|++++|+||++| |. +|+++++++. ...+.+.++||...
T Consensus 218 livDea~~~~~--~~~~~~~~~~d~~~~s~~K~~g--~~-~G~~~~~~~~~~~~~~~~~~~~~~~--------------- 277 (432)
T 3a9z_A 218 VHTDAAQALGK--RRVDVEDLGVDFLTIVGHKFYG--PR-IGALYVRGVGKLTPLYPMLFGGGQE--------------- 277 (432)
T ss_dssp EEEECTTTTTT--SCCCHHHHCCSEEEEEGGGTTC--CS-CEEEEETTBTTTBCCCCSCCSSCGG---------------
T ss_pred EEEEchhhhCC--cccChhhcCCCEEEEehhHhcC--Cc-ceEEEEccccccCCcCceeecCCcc---------------
Confidence 99999998876 4677766789999999999998 86 9999999876 44455544432100
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
..+ +.|+++.+.+.++. ++|+++.+ +
T Consensus 278 ----------~~~-------------------~~~~~~~~~~~a~~------------------------aal~~~~~-~ 303 (432)
T 3a9z_A 278 ----------RNF-------------------RPGTENTPMIAGLG------------------------KAADLVSE-N 303 (432)
T ss_dssp ----------GGT-------------------SCSCCCHHHHHHHH------------------------HHHHHHHH-H
T ss_pred ----------ccc-------------------cCCCcCHHHHHHHH------------------------HHHHHHHh-h
Confidence 000 13445555566665 78887765 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC-CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccC
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG 541 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~-~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G 541 (632)
++.+.++.+.+.++|.+.|.++. | ..+.+++|... ...+.+++|.+.+.. ++...+.+.+ .+|.++.|
T Consensus 304 ~~~~~~~~~~~~~~l~~~L~~~~-----g-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~G 372 (432)
T 3a9z_A 304 CETYEAHMRDIRDYLEERLEAEF-----G-KRIHLNSRFPGVERLPNTCNFSIQGSQ---LRGYMVLAQC--QTLLASVG 372 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----G-GGEEESSCCTTCCBCTTEEEEEECSTT---CCHHHHHHHC--SSEECBSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----C-CcEEEeCCCCcccCCCCEEEEEeCCCC---CcHHHHHHHh--cCeEEecc
Confidence 89999999999999999999851 2 23556676321 223568999987621 2344443322 48999999
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..|.++.+... ...+..... . .....++||+|++.++|.|||+++++.|++++.
T Consensus 373 ~~~~~~~~~~~----~~~l~~~g~--~----------~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~ 426 (432)
T 3a9z_A 373 ASCHSDHEDRP----SPVLLSCGI--P----------VDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN 426 (432)
T ss_dssp CGGGGGGTTSC----CHHHHHTTC--C----------HHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCc----cHHHHhcCC--C----------ccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 98876421100 011111000 0 001236999999999999999999999999875
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=288.06 Aligned_cols=372 Identities=17% Similarity=0.138 Sum_probs=276.2
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc-ccccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s-~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
++.+|||+++.++.|+.+++++.+.+.... ..+|+++ .+.++....+.++++|+.+++++|+
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~ 83 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDG-----------------TFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 83 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTS-----------------CCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcc-----------------cccCCCccccchhHHHHHHHHHHHHHHHHHcCC
Confidence 679999999999999999999887654110 0134443 2223333457888999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCC---CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYP---FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~---~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
+++ .|+||+|+|+|+.+++.++. -++||+|++. ..|++ ....+ ..++..|++++.++.+ +++.+|+++|++
T Consensus 84 ~~~--~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~-~~~~~-~~~~~~g~~~~~v~~~-~~~~~d~~~l~~ 158 (423)
T 3lvm_A 84 DPR--EIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKA-VLDTC-RQLEREGFEVTYLAPQ-RNGIIDLKELEA 158 (423)
T ss_dssp CGG--GEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHH-HHHHH-HHHHHTTCEEEEECCC-TTSCCCHHHHHH
T ss_pred CCC--eEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchH-HHHHH-HHHHHcCCEEEEeccC-CCCccCHHHHHH
Confidence 865 79999999999999998873 1369997755 56765 33332 3336789999999998 577889999999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCC
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGEN 340 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~ 340 (632)
+|+++ ++++++++.+|+||..+|++ |.++|+++|+++++|.++..+. .++++..+++|++++|+||++|
T Consensus 159 ~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~sK~~g-- 228 (423)
T 3lvm_A 159 AMRDD------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK--LPIDLSQLKVDLMSFSGHKIYG-- 228 (423)
T ss_dssp HCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTSCCSEEEEESTTTTS--
T ss_pred hcCCC------cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCC--CCcChhhcCCCEEEechHHhcC--
Confidence 98754 58999999999999999999 9999999999999999998876 4788888899999999999988
Q ss_pred CCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcc
Q 006746 341 PSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLE 420 (632)
Q Consensus 341 P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~ 420 (632)
|.|+|+++++++....+.+...+|... . .+ ..++++
T Consensus 229 ~~g~G~~~~~~~~~~~~~~~~~~~~~~------------~-------------~~-------------------~~~~~~ 264 (423)
T 3lvm_A 229 PKGIGALYVRRKPRVRIEAQMHGGGHE------------R-------------GM-------------------RSGTLP 264 (423)
T ss_dssp CSSCEEEEECBTTBCCCCCSSCSSCTT------------T-------------TT-------------------CCSCCC
T ss_pred CCCeEEEEEeccccCCCCccccCCccc------------c-------------cc-------------------cCCCCC
Confidence 779999999998877776654431100 0 00 123444
Q ss_pred cchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECC
Q 006746 421 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGP 500 (632)
Q Consensus 421 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp 500 (632)
.+.+.++. .+++.+... ++.+.++.+.+.++|.+.|.++ |.++++++
T Consensus 265 ~~~~~a~~------------------------~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~ 311 (423)
T 3lvm_A 265 VHQIVGMG------------------------EAYRIAKEE-MATEMERLRGLRNRLWNGIKDI--------EEVYLNGD 311 (423)
T ss_dssp HHHHHHHH------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTS--------TTEEEESC
T ss_pred HHHHHHHH------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC--------CCEEEeCC
Confidence 55555554 777777654 8999999999999999999876 67899887
Q ss_pred CCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCC
Q 006746 501 KIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580 (632)
Q Consensus 501 ~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 580 (632)
.. ...++++.|.+.+ ++...+.+.+.+ |.++.|.+|.++..... .++.... .. ..
T Consensus 312 ~~-~~~~~~~~~~~~~-----~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~-----~~~~~~g--~~----------~~ 366 (423)
T 3lvm_A 312 LE-HGAPNILNVSFNY-----VEGESLIMALKD--LAVSSGSACTSASLEPS-----YVLRALG--LN----------DE 366 (423)
T ss_dssp ST-TBCTTEEEEEETT-----SCHHHHHHHTTT--EECBCCCC-----CCCC-----HHHHHHT--CC----------HH
T ss_pred cc-ccCCCeEEEEeCC-----CCHHHHHHHHhh--heeccCccccCCCcccc-----HHHHHhC--CC----------cc
Confidence 53 2346788898855 567777776655 99999999987432110 0010000 00 01
Q ss_pred CCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 581 LGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 581 ~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.||+|++..+|.|||+++++.|+++++.
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12469999999999999999999999998865
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=291.13 Aligned_cols=394 Identities=12% Similarity=0.158 Sum_probs=272.5
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccc
Q 006746 76 SLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKT 155 (632)
Q Consensus 76 a~~~F~~~~p~y~~~~~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~ 155 (632)
.|+..+... ..++++|+ +||.+ ++.+|||+++.++.|..+++++.+.+... |
T Consensus 5 ~~~~~~~~~------~~~~~~r~-~f~~~--~~~~yld~~~~~~~~~~v~~a~~~~l~~~--------~----------- 56 (416)
T 1qz9_A 5 NDCLALDAQ------DSLAPLRQ-QFALP--EGVIYLDGNSLGARPVAALARAQAVIAEE--------W----------- 56 (416)
T ss_dssp HHHHHHHHT------CTTGGGGG-GBCCC--TTCEECCTTTSCCCBTTHHHHHHHHHHTC--------C-----------
T ss_pred hHHHhcccc------chhHHHHH-hCCCC--CCeEeecCCCcCCCcHHHHHHHHHHHHHH--------H-----------
Confidence 355666644 35667886 79977 78999999999999999999877644210 0
Q ss_pred cccccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-CC----CCCCe-EEEec-cccchhh
Q 006746 156 GNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-PF----MSVKN-LLTVY-DYESEAV 228 (632)
Q Consensus 156 ~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-~~----~~gd~-ilt~~-d~~s~~v 228 (632)
+++.....+.....+.++++|+.+++++|++++ .|+||+|+|+++.+++.++ .+ ++||+ |++.. .|++ ..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~-~~ 133 (416)
T 1qz9_A 57 GNGLIRSWNSAGWRDLSERLGNRLATLIGARDG--EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPT-DL 133 (416)
T ss_dssp CCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT--SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHH-HH
T ss_pred hccCccccchhhHHHHHHHHHHHHHHHcCCCcc--cEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCc-hH
Confidence 222111011111236778999999999999765 6999999999999888776 45 78987 55544 5554 23
Q ss_pred HHHHHHHHhc--CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEE
Q 006746 229 EAMIRTSEKR--GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHIL 305 (632)
Q Consensus 229 ~~~~~~a~~~--G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vl 305 (632)
..+..+++.. |++++.++. +++|+++|++ ++++|++++.+|+||...|++ |.++|+++|++++
T Consensus 134 ~~~~~~~~~~~~g~~~~~v~~--------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li 199 (416)
T 1qz9_A 134 YIAEGLADMLQQGYTLRLVDS--------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAI 199 (416)
T ss_dssp HHHHHHHHHHCSSCEEEEESS--------GGGHHHHCST------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHhcCCceEEEeCc--------HHHHHHHhCC------CceEEEEeccccCcccccCHHHHHHHHHHcCCEEE
Confidence 3333444445 999988875 4677777754 358999999999999999999 9999999999999
Q ss_pred EeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCce-EEEEEeCCCccccCCCCCC--CceeecccccccccccccC
Q 006746 306 IDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF-GCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 306 vDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~-G~L~Vr~~~~~~L~~~~~g--G~v~~~~~~~~~~~~~~~~ 382 (632)
+|+++..|. .++++..+++|++++|+||+++. +.|+ |+++++++.++.+.+...| |... .|....
T Consensus 200 ~D~a~~~g~--~~~~~~~~~~d~~~~s~~K~l~~-g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~-------~~~~~~-- 267 (416)
T 1qz9_A 200 WDLAHSAGA--VPVDLHQAGADYAIGCTYKYLNG-GPGSQAFVWVSPQLCDLVPQPLSGWFGHSR-------QFAMEP-- 267 (416)
T ss_dssp EECTTTTTT--SCCCHHHHTCSEEEECSSSTTCC-CTTCCCEEEECTTTTTTSCCSCCCGGGBCT-------TSCCCS--
T ss_pred EEccccccC--cCCChhhcCCCEEEecCcccCCC-CCCCeEEEEECHHHHhccCCCccccCcccc-------ccCCCC--
Confidence 999999876 46677667899999999997543 4466 9999999988777764433 2210 000000
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
.+........ .+.|+++++.+.++. .+|+.+.+.|
T Consensus 268 --~~~~~~~~~~-------------------~~~~~~~~~~~~a~~------------------------~al~~~~~~~ 302 (416)
T 1qz9_A 268 --RYEPSNGIAR-------------------YLCGTQPITSLAMVE------------------------CGLDVFAQTD 302 (416)
T ss_dssp --SCCBCSSGGG-------------------GCCSCCCHHHHHHHH------------------------HHHHHHTTSC
T ss_pred --ccCCCcchHH-------------------hcCCCCCHHHHHHHH------------------------HHHHHHHhcC
Confidence 0000000000 124566666677665 7888887678
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCC--cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEcc
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNA--LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSY 540 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p--~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~ 540 (632)
++.+.++.+.+.++|.+.|.++ .| .+++++|.....+++++.|.+.+ ...+.+.+.++||.++.
T Consensus 303 ~~~~~~~~~~~~~~l~~~L~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~l~~~gi~~~~ 368 (416)
T 1qz9_A 303 MASLRRKSLALTDLFIELVEQR-------CAAHELTLVTPREHAKRGSHVSFEHPE-------GYAVIQALIDRGVIGDY 368 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HTTSCCEECSCSSGGGBCSEEEEECTT-------HHHHHHHHHTTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-------ccCCCeEEeCCCCHHHcCCEEEEecCC-------HHHHHHHHHhCCcEecc
Confidence 9999999999999999999885 13 57787774322357888887653 34555555567887531
Q ss_pred CccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccC-CCCCHHHHHHHHHHHHHhhhhccccccc
Q 006746 541 GSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDADFVEKAR 619 (632)
Q Consensus 541 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg-~~~t~eDV~rlv~~l~~~l~~~f~~~~~ 619 (632)
...+.||+|++ +++|.+||+++++.|++++.. ..
T Consensus 369 ----------------------------------------~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~-----~~ 403 (416)
T 1qz9_A 369 ----------------------------------------REPRIMRFGFTPLYTTFTEVWDAVQILGEILDR-----KT 403 (416)
T ss_dssp ----------------------------------------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH-----TT
T ss_pred ----------------------------------------CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc-----cc
Confidence 12358999998 699999999999999998654 58
Q ss_pred ceeeecccccc
Q 006746 620 WRYTALDQKTI 630 (632)
Q Consensus 620 ~~~~~~~~~~~ 630 (632)
|+.-..|+++.
T Consensus 404 ~~~~~~~~~~~ 414 (416)
T 1qz9_A 404 WAQAQFQVRHS 414 (416)
T ss_dssp TC---------
T ss_pred cccccccccCC
Confidence 99988888864
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=295.00 Aligned_cols=368 Identities=15% Similarity=0.071 Sum_probs=253.1
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
++.+|||+++.++.|+.+++++.+.+.. ..+|+++.+.++....+.++++|+.+++++|++
T Consensus 19 ~~~iyld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~ 79 (400)
T 3vax_A 19 SHMTYLDAAATTRVDQRVADIVLHWMTA-------------------EFGNAGSRHEYGIRAKRGVERAREYLASTVSAE 79 (400)
T ss_dssp ---CCCCCCCCSSSCHHHHHHHHHHHHH-------------------HHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHHh-------------------ccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC
Confidence 6789999999999999999997764421 113444433333334577889999999999998
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCC-C--CCCC-eEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYP-F--MSVK-NLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~-~--~~gd-~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
++ .|+||+|+|+|+.+++.++- + ++|| +|++. .+|++ ....+. ..++.|++++.++++ +++.+|+++|++
T Consensus 80 ~~--~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~-~~~~~~-~~~~~g~~~~~v~~~-~~~~~d~~~l~~ 154 (400)
T 3vax_A 80 PD--ELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKA-VLEPLE-HLAGRGFEVDFLTPG-PSGRISVEGVME 154 (400)
T ss_dssp GG--GEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHH-HHHHHH-HHHTTTCEEEEECCC-TTCCCCHHHHHT
T ss_pred CC--cEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHh-HHHHHH-HHHhcCCeEEEEccC-CCCCcCHHHHHH
Confidence 65 79999999999999999982 1 6899 87754 56775 333323 345689999999998 577899999998
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCC
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGEN 340 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~ 340 (632)
+|+++ ++++++++.+|+||..+|++ |.++|+++|+++++|+++..+. .++++..+ +|++++|+||++|
T Consensus 155 ~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~-~d~~~~s~~K~~g-- 223 (400)
T 3vax_A 155 RLRPD------TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGK--VPGDLTTP-IDMISISGHKIGA-- 223 (400)
T ss_dssp TCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTT--SGGGGGSC-CSEEEEETGGGTS--
T ss_pred hcCCC------ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCC--CCcChhhc-CcEEEEeHHHhCC--
Confidence 88653 58999999999999999999 9999999999999999999886 47777777 9999999999888
Q ss_pred CCceEEEE-EeCCCcc----ccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhh
Q 006746 341 PSGFGCLF-VKKSTVP----ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415 (632)
Q Consensus 341 P~G~G~L~-Vr~~~~~----~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~ 415 (632)
|.|+|+++ ++++.+. .+.+...++... .. .+
T Consensus 224 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~-------------------~~ 259 (400)
T 3vax_A 224 PKGVGALVTRRREEMDDERVPLEPIMFGGGQE-------------------------RK-------------------LR 259 (400)
T ss_dssp CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTG-------------------------GG-------------------TS
T ss_pred CCceEEEEEecchhccccccccCceecCCCce-------------------------ee-------------------ee
Confidence 88999999 9884332 233322221100 00 01
Q ss_pred cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE
Q 006746 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV 495 (632)
Q Consensus 416 ~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v 495 (632)
.|+++++.+.++. .+++.+.+ +++.+.++.+.+.+++.+.|. + +.+
T Consensus 260 ~~~~~~~~~~a~~------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~-~--------~~~ 305 (400)
T 3vax_A 260 PGTLPVPLIMGLA------------------------EAAKIFEA-EHAQWQVAAQDLRSRLLAGLA-S--------TSF 305 (400)
T ss_dssp CSCCCHHHHHHHH------------------------HHHHHHHH-SHHHHHHHHHHHHHHHHHHHT-T--------TTC
T ss_pred cCCCCHHHHHHHH------------------------HHHHHHHh-hHHHHHHHHHHHHHHHHHhhC-C--------CCE
Confidence 3445555566665 78887765 789999999999999999998 5 557
Q ss_pred EEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccc
Q 006746 496 KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 575 (632)
Q Consensus 496 ~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 575 (632)
+++++.. ...++++.|.+.+ ++...+.+.+. +||.++.|..|........ .++.... . .
T Consensus 306 ~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~-----~~~~~~g--~----~--- 364 (400)
T 3vax_A 306 QVNGDQD-HVVPHILNLSFED-----VDAEAFLVTLK-DLVAVATGSASTSASFTPS-----HVLRAMG--L----P--- 364 (400)
T ss_dssp EECSCTT-SBCTTEEEEECTT-----CCHHHHHHHHH-HHHHHTTTTEEEEEEECCH-----HHHHTTT--C----C---
T ss_pred EEeCCcc-cCCCCEEEEEeCC-----CCHHHHHHHHh-cCcEEEecccccCCCCCcc-----HHHHHcC--C----C---
Confidence 8887753 2345688898875 56677777677 8999999988876421110 0010000 0 0
Q ss_pred cccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhh
Q 006746 576 KDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 576 ~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~ 611 (632)
+....+.||+|+ +.++|.|||+++++.|+++++
T Consensus 365 ---~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 365 ---EEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp ---HHHHTSEEEEEEEEC-------------------
T ss_pred ---ccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 001147999999 999999999999999998865
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=283.41 Aligned_cols=363 Identities=10% Similarity=0.006 Sum_probs=268.9
Q ss_pred hccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 100 ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
+||.+ .+.+|||+++.++.|+.+++++.+.+.. + ++......+++.|+.+
T Consensus 2 ~fp~~--~~~~yl~~~~~~~~~~~v~~a~~~~~~~--------------------------~--~~~~~~~~~~~l~~~l 51 (392)
T 2z9v_A 2 RYPEH--ADPVITLTAGPVNAYPEVLRGLGRTVLY--------------------------D--YDPAFQLLYEKVVDKA 51 (392)
T ss_dssp CCCTT--SCCSEECSSSCCCCCHHHHHHTTSCCCC--------------------------T--TSHHHHHHHHHHHHHH
T ss_pred CcccC--CCcceeecCCCcCCCHHHHHHHhccccc--------------------------c--ccHHHHHHHHHHHHHH
Confidence 59999 6789999999999999999997654321 0 0111246778999999
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHH
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEK 258 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~ 258 (632)
++++|++++ .|+||+|+|+|+.+++.++ +++||+|++ ...|++. .+ ...++..|++++.++++ +++.+++++
T Consensus 52 a~~~g~~~~--~v~~t~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~ 124 (392)
T 2z9v_A 52 QKAMRLSNK--PVILHGEPVLGLEAAAASL-ISPDDVVLNLASGVYGK--GF-GYWAKRYSPHLLEIEVP-YNEAIDPQA 124 (392)
T ss_dssp HHHTTCSSC--CEEESSCTHHHHHHHHHHH-CCTTCCEEEEESSHHHH--HH-HHHHHHHCSCEEEEECC-TTSCCCHHH
T ss_pred HHHhCCCCC--EEEEeCCchHHHHHHHHHh-cCCCCEEEEecCCcccH--HH-HHHHHHcCCceEEeeCC-CCCCCCHHH
Confidence 999999754 7999999999999999998 789999765 4567752 33 45567789999999997 456799999
Q ss_pred HHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccc-
Q 006746 259 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQI- 336 (632)
Q Consensus 259 l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~- 336 (632)
|+++|.+. ++++++++++.+|+||..+|++ |.++|+++|+++++|+++..|. .++++..+++|++++|+||+
T Consensus 125 l~~~l~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d~~~~s~sK~~ 198 (392)
T 2z9v_A 125 VADMLKAH----PEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGG--MKTHPEDCKADIYVTGPNKCL 198 (392)
T ss_dssp HHHHHHHC----TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BSCCGGGGTCSEEEECSSSTT
T ss_pred HHHHHhcC----CCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCC--cccccccccceEEEecCcccc
Confidence 99999641 1358999999999999999999 9999999999999999998876 46777778899999999994
Q ss_pred cCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhh
Q 006746 337 FGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415 (632)
Q Consensus 337 ~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~ 415 (632)
+| |.|+|+++++++.++.+++...| |.. .......+. .+. ..+ ..
T Consensus 199 ~~--~~g~G~l~~~~~~~~~l~~~~~g~~~~--~~~~~~~~~-------~~~-----------~~~------------~~ 244 (392)
T 2z9v_A 199 GA--PPGLTMMGVSERAWAKMKANPLAPRAS--MLSIVDWEN-------AWS-----------RDK------------PF 244 (392)
T ss_dssp CC--CSCCEEEEECHHHHHHHHTCTTSCCSS--TTCSGGGTT-------TTS-----------TTS------------CC
T ss_pred cC--CCceeEEEECHHHHHHhhhccCCCCce--eccHHHHHh-------hhc-----------ccC------------CC
Confidence 55 78999999999877666542211 100 000000000 000 000 02
Q ss_pred cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE
Q 006746 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV 495 (632)
Q Consensus 416 ~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v 495 (632)
.|+++++.+.++. .+|+.+.+.|++.+.++.+.+.+++++.|.++ | +
T Consensus 245 ~~~~~~~~~~a~~------------------------~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------g---~ 291 (392)
T 2z9v_A 245 PFTPSVSEINGLD------------------------VALDLYLNEGPEAVWARHALTAKAMRAGVTAM------G---L 291 (392)
T ss_dssp SSCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---C
T ss_pred CCCCCHHHHHHHH------------------------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc------C---C
Confidence 3556666666665 78998888899999999999999999999987 3 3
Q ss_pred EEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHh-CCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccc
Q 006746 496 KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADR-ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNN 574 (632)
Q Consensus 496 ~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~-~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 574 (632)
+++.|......+.++.|.+.+ | ++...+.+.+.+ +||.++.|..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~l~~~L~~~~gi~v~~g~~~------------------------------ 337 (392)
T 2z9v_A 292 SVWAASDSIASPTTTAVRTPD--G--VDEKALRQAARARYGVVFSSGRGE------------------------------ 337 (392)
T ss_dssp CBSSSSGGGBCTTEEEEECCT--T--CCHHHHHHHHHHHHCEECEECCGG------------------------------
T ss_pred eeccCCccccCCceEEEECCC--C--CCHHHHHHHHHhcCCEEEecCCCC------------------------------
Confidence 455532112357788888752 1 455666554444 59999877421
Q ss_pred ccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 575 RKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 575 ~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.||+|+ ++++|.+||+++++.|+++++.
T Consensus 338 ------~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 338 ------TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp ------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ------CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 0235899996 5599999999999999998764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=279.30 Aligned_cols=366 Identities=18% Similarity=0.177 Sum_probs=259.5
Q ss_pred eEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCC
Q 006746 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND 189 (632)
Q Consensus 110 vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~e 189 (632)
+|||+++.++.|+.+++++.+.+... .+|+++.+.++......+.+.|+.+++++|++++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~- 62 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREK-------------------YGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS- 62 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTC-------------------CCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhc-------------------CCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-
Confidence 89999999999999999987654310 1233322222222356778999999999999865
Q ss_pred ccEEEeCCHHHHHHHHHhhCC---CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 190 YGMVFTANRTSAFKLLAESYP---FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 190 y~vvft~naT~al~lv~~sl~---~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
.|+||+|+|+|+.+++.++. +++||+|++. ..|++ .... ...++..|++++.++.+ +++.+++++|+++|++
T Consensus 63 -~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~ 138 (384)
T 1eg5_A 63 -EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKA-VLET-MKYLSMKGFKVKYVPVD-SRGVVKLEELEKLVDE 138 (384)
T ss_dssp -GEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHH-HHHH-HHHHHHTTCEEEECCBC-TTSCBCHHHHHHHCCT
T ss_pred -eEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchH-HHHH-HHHHHhcCCEEEEEccC-CCCccCHHHHHHHhCC
Confidence 79999999999999999985 3789997765 46664 2222 33346689999999987 5677999999998865
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCC--cEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEND--WHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g--~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
+ ++++++++.+|+||..+|++ |.++|+++| +++++|.++..+. .++++..+++|++++|+||++| |.
T Consensus 139 ~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~sK~~g--~~ 208 (384)
T 1eg5_A 139 D------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK--IPFSLEKLEVDYASFSAHKFHG--PK 208 (384)
T ss_dssp T------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT--SCCCCTTTCCSEEEEEGGGGTS--CT
T ss_pred C------CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCC--cccCchhcCCCEEEecHHHhcC--CC
Confidence 3 58999999999999999999 999999999 9999999988775 3667777789999999999999 77
Q ss_pred ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccc
Q 006746 343 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 422 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~ 422 (632)
|+|+++++++. .+.+.+.++.. .. .+ ..++.+.+
T Consensus 209 G~G~~~~~~~~--~~~~~~~~~~~------------~~-------------~~-------------------~~~~~~~~ 242 (384)
T 1eg5_A 209 GVGITYIRKGV--PIRPLIHGGGQ------------ER-------------GL-------------------RSGTQNVP 242 (384)
T ss_dssp TCEEEEECTTS--CCCCSBCSSCT------------TT-------------TT-------------------BCSCCCHH
T ss_pred ceEEEEEcCCC--ccccccccCcc------------cc-------------cc-------------------cCCCCChH
Confidence 89999999875 23332221000 00 00 02233444
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC
Q 006746 423 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 502 (632)
Q Consensus 423 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~ 502 (632)
.+.++. .+|+...+ +++.+.++.+.+.+++.+.|.+. | +++++|..
T Consensus 243 ~~~a~~------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~ 288 (384)
T 1eg5_A 243 GIVGAA------------------------RAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNL------G---AHIITPLE 288 (384)
T ss_dssp HHHHHH------------------------HHHHHHHH-THHHHHHHHHHHHHHHHHHHHTT------T---CEECSCTT
T ss_pred HHHHHH------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCC------C---eEEeCCcc
Confidence 444444 67777544 68899999999999999999874 3 56666532
Q ss_pred CCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCC
Q 006746 503 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 582 (632)
Q Consensus 503 ~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 582 (632)
...+.++.|.+.+ ++...+.+.+.++||.++.|..|........ .+++... .+ ....
T Consensus 289 -~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~g--~~----------~~~~ 345 (384)
T 1eg5_A 289 -ISLPNTLSVSFPN-----IRGSTLQNLLSGYGIYVSTSSACTSKDERLR-----HVLDAMG--VD----------RRIA 345 (384)
T ss_dssp -SBCTTEEEEECTT-----CCHHHHHHHHHHTTEECBC-----------------CHHHHTT--CC----------HHHH
T ss_pred -cCCCCEEEEEeCC-----CCHHHHHHHHhhCCeEEeccccccCCCCcch-----HHHHHcC--CC----------hhhc
Confidence 1245688888764 4666777777789999999987754321110 1111100 00 0012
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 583 ITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 583 ~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.||+|++.++|.+||+++++.|+++++.
T Consensus 346 ~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 346 QGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (384)
T ss_dssp HHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999864
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=276.10 Aligned_cols=366 Identities=12% Similarity=0.106 Sum_probs=271.9
Q ss_pred HHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHH
Q 006746 95 QIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA 174 (632)
Q Consensus 95 ~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~ 174 (632)
++|+ +||.+ ++.+|||+.+.+..++.+++++.+.+.. .|+....+..++
T Consensus 9 ~~r~-~f~~~--~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------------------------~~~~~~~~~~~~ 57 (386)
T 2dr1_A 9 AFKE-VYEMV--KPKYKLFTAGPVACFPEVLEIMKVQMFS----------------------------HRSKEYRKVHMD 57 (386)
T ss_dssp HHHH-HHHHH--SCCSEECCSSSCCCCHHHHHHTTSCCCC----------------------------TTSHHHHHHHHH
T ss_pred HHHH-HHhhc--CccceeecCCCcCCcHHHHHHHhccccc----------------------------ccCHHHHHHHHH
Confidence 5665 69988 5689999999999999999997653310 011112577889
Q ss_pred HHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccc
Q 006746 175 MKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLR 253 (632)
Q Consensus 175 ~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~ 253 (632)
+++.+++++|++ +...|+||+|+|+|+.+++.++ +++||+|++ ...|++. . +...++..|++++.++.+ +++.
T Consensus 58 ~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l-~~~gd~vl~~~~~~~~~--~-~~~~~~~~g~~~~~v~~~-~~~~ 131 (386)
T 2dr1_A 58 TVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNG-VSKGGKVLVTIIGAFGK--R-YKEVVESNGRKAVVLEYE-PGKA 131 (386)
T ss_dssp HHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHH-SCTTCEEEEEESSHHHH--H-HHHHHHHTTCEEEEEECC-TTCC
T ss_pred HHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHh-hcCCCeEEEEcCCchhH--H-HHHHHHHhCCceEEEecC-CCCC
Confidence 999999999997 2336999999999999999998 789999765 4566642 2 345667889999999997 5677
Q ss_pred cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 006746 254 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS 332 (632)
Q Consensus 254 i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S 332 (632)
+++++|+++|.+. ++++++++++.+|+||...|++ |.++|+++|+++++|+++..+. .++++..+++|++++|
T Consensus 132 ~d~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s 205 (386)
T 2dr1_A 132 VKPEDLDDALRKN----PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGG--ADIKFDKWGLDVVFSS 205 (386)
T ss_dssp CCHHHHHHHHHHC----TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEEEE
T ss_pred CCHHHHHHHHhcC----CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccC--ccccccccCCcEEEEe
Confidence 9999999999641 1358999999999999999999 9999999999999999998876 3567777889999999
Q ss_pred cccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh-ccccCCCccchh
Q 006746 333 FYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV-AATNTFSGPMSI 411 (632)
Q Consensus 333 ~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e-~gt~~f~~~~~~ 411 (632)
+||++|. |.|+|+++++++.++.+.+....|. ++ + +. ....... .+.
T Consensus 206 ~sK~~~~-~~g~G~~~~~~~~~~~~~~~~~~~~---------~~--~------~~-----~~~~~~~~~~~--------- 253 (386)
T 2dr1_A 206 SQKAFGV-PPGLAIGAFSERFLEIAEKMPERGW---------YF--D------IP-----LYVKYLKEKES--------- 253 (386)
T ss_dssp TTSTTCC-CSSCEEEEECHHHHHHHTTCTTCCS---------TT--C------HH-----HHHHHHHHHSS---------
T ss_pred ccccccC-CCceEEEEECHHHHHHHhcCCCCce---------EE--e------HH-----HHHHhhccCCC---------
Confidence 9998875 7789999999887766654211110 00 0 00 0000000 000
Q ss_pred hhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCC
Q 006746 412 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTE 490 (632)
Q Consensus 412 ~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~ 490 (632)
..++++.+...++. .+|+.+.+. |++.+.++.+.+.+++.+.|.++
T Consensus 254 ---~~~~~~~~~~~a~~------------------------~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~------ 300 (386)
T 2dr1_A 254 ---TPSTPPMPQVFGIN------------------------VALRIIEKMGGKEKWLEMYEKRAKMVREGVREI------ 300 (386)
T ss_dssp ---CSSCCCHHHHHHHH------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred ---CCCCCCHHHHHHHH------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc------
Confidence 12344555555554 788888777 89999999999999999999987
Q ss_pred CCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccc
Q 006746 491 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 570 (632)
Q Consensus 491 G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 570 (632)
| ++++.|.. ...+.++.|.+.+ | ++...+.+.+.++||.++.|..+
T Consensus 301 g---~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~~~~~-------------------------- 346 (386)
T 2dr1_A 301 G---LDILAEPG-HESPTITAVLTPP--G--IKGDEVYEAMRKRGFELAKGYGS-------------------------- 346 (386)
T ss_dssp T---CCBSSCTT-CBCSSEEEEECCT--T--CCHHHHHHHHHHTTEECEECCGG--------------------------
T ss_pred C---CeeCcCcc-ccCCceEEEEcCC--C--CCHHHHHHHHHHCCeEEecCccc--------------------------
Confidence 3 34455532 2357788888763 1 45666665555569999876410
Q ss_pred ccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 571 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 571 ~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.||+|++.++|.+||+++++.|+++++.
T Consensus 347 ----------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 347 ----------VKEKTFRIGHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp ----------GTTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ----------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 02358999999999999999999999998764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=265.88 Aligned_cols=356 Identities=13% Similarity=0.076 Sum_probs=263.8
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCc
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey 190 (632)
+|.+.|..++++.+++++.+.+... ++....+.++++|+.+++++|++++..
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~~~~~ 55 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVGF----------------------------TSKEFVEALAYSLKGLRYVMGASKNYQ 55 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCCT----------------------------TSHHHHHHHHHHHHHHHHHHTCCTTSE
T ss_pred eeccCCCCCCCHHHHHHhhcccccc----------------------------ccHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4566777788999999876533110 011124678899999999999986334
Q ss_pred cEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcC
Q 006746 191 GMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK 269 (632)
Q Consensus 191 ~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~ 269 (632)
.|+||+|+|+|+. ++.++ +++||+|++ ...|++. . +...++..|++++.++++ +++.+|+++|+++|++.
T Consensus 56 ~v~~~~g~t~al~-~~~~~-~~~gd~vi~~~~~~~~~--~-~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~~--- 126 (384)
T 3zrp_A 56 PLIIPGGGTSAME-SVTSL-LKPNDKILVVSNGVFGD--R-WEQIFKRYPVNVKVLRPS-PGDYVKPGEVEEEVRKS--- 126 (384)
T ss_dssp EEEEESCHHHHHH-HGGGG-CCTTCEEEEECSSHHHH--H-HHHHHTTSSCEEEEECCS-TTCCCCHHHHHHHHHHS---
T ss_pred EEEEcCCcHHHHH-HHHhh-cCCCCEEEEecCCcchH--H-HHHHHHHcCCcEEEecCC-CCCCCCHHHHHHHHHhC---
Confidence 7999999999999 88888 789999765 4567652 2 345667889999999998 56779999999999872
Q ss_pred CCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEE
Q 006746 270 KKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLF 348 (632)
Q Consensus 270 ~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~ 348 (632)
+++++++++.+|+||..+|++ |.++|+++|+++++|+++..+. .++++..+++|++++|+||+++. |.|+|+++
T Consensus 127 --~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~g~~~ 201 (384)
T 3zrp_A 127 --EYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGA--EEVKAEEWNVDVYLTASQKALGS-AAGLGLLL 201 (384)
T ss_dssp --CEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTT--SCCCTTTTTCSEEEEETTSTTCC-CSSEEEEE
T ss_pred --CCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccC--ccccccccCCCEEEecCcccccC-CCceEEEE
Confidence 258999999999999999999 9999999999999999999887 57888888999999999996643 78999999
Q ss_pred EeCCCcccc-CCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHh
Q 006746 349 VKKSTVPIL-VDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV 427 (632)
Q Consensus 349 Vr~~~~~~L-~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l 427 (632)
++++.++.+ ++....+ ++.... .+. .....++.|.. ...|+++++.+.++
T Consensus 202 ~~~~~~~~~~~~~~~~~----------~~~~~~----~~~-----~~~~~~~~~~~----------~~~g~~~~~~~~a~ 252 (384)
T 3zrp_A 202 LSPKALSILDSQNSIAG----------YYLDLR----NWL-----PVMRGAEEGKA----------AYFATPPVHVILQL 252 (384)
T ss_dssp ECHHHHHHHHHCCCSCC----------STTCHH----HHH-----HHHHHHHTTCC----------CCSSCCCHHHHHHH
T ss_pred ECHHHHHHhcCCCCCCc----------ccccHH----HHH-----HHHHhhcccCC----------CcCCCCCHHHHHHH
Confidence 999887766 4321100 010000 000 00000111000 01246667777777
Q ss_pred hhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCC
Q 006746 428 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG 507 (632)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg 507 (632)
. .+++++...|++.+.++.+.+.+++.+.|.++ | ++++.+......+
T Consensus 253 ~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~~~~~~ 299 (384)
T 3zrp_A 253 A------------------------EAFRLIEKEGIENRIKRHTMVASAIRAGLEAL------G---LEIVARRPESYSN 299 (384)
T ss_dssp H------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CCBSCSSGGGBCS
T ss_pred H------------------------HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC------C---CeEccCcccccCc
Confidence 5 88998888899999999999999999999987 3 3455553222346
Q ss_pred cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEE
Q 006746 508 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT 587 (632)
Q Consensus 508 ~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VR 587 (632)
.++.|.+.+ ++...+.+.+.++||.++.|.+|. .+.||
T Consensus 300 ~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~-------------------------------------~~~iR 337 (384)
T 3zrp_A 300 TVTGVILKV-----ADPQKVLAGTVNEGVEFAPGVHPA-------------------------------------FKYFR 337 (384)
T ss_dssp SEEEEECSS-----SCHHHHHHHHHTTTCCCEECCCTT-------------------------------------CCEEE
T ss_pred cEEEEECCC-----CCHHHHHHHHHHCCEEEecCCCCC-------------------------------------cCEEE
Confidence 777888775 466777766666799998764211 16999
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 588 ASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 588 vSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+|++.++|.+||+++++.|+++++.
T Consensus 338 i~~~~~~~~e~i~~~~~~l~~~l~~ 362 (384)
T 3zrp_A 338 IGHMGWVTPNDAIIAISVIERTLRK 362 (384)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=266.78 Aligned_cols=371 Identities=11% Similarity=0.048 Sum_probs=269.1
Q ss_pred HHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHH
Q 006746 94 DQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES 173 (632)
Q Consensus 94 d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~ 173 (632)
+..|+ .||.|. ++.+|+|+.|....|+.+++++.+.+.. + |+......++
T Consensus 6 ~~~~~-~~~~~~-~~~~~~~~~g~~~~~~~v~~a~~~~~~~--------------------------~--~~~~~~~~~~ 55 (393)
T 2huf_A 6 TPPAV-LREPLV-TPNKLLMGPGPSNAPQRVLDAMSRPILG--------------------------H--LHPETLKIMD 55 (393)
T ss_dssp CCCGG-GGSCCC-CCCCEECSSSCCCCCHHHHHHTTSCCCC--------------------------T--TSHHHHHHHH
T ss_pred cchhh-hhcccC-CCCeEEecCCCCCCCHHHHHHHHhhhcc--------------------------C--CCHHHHHHHH
Confidence 33444 599886 6789999999999999999997653311 0 0001246778
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCcc
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRL 252 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~ 252 (632)
++|+.+++++|++++ +.|+||+|+|+|+.+++.++ +++||+|++ ...|++. .+ ...++..|++++.++++ +++
T Consensus 56 ~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~~-~~~ 129 (393)
T 2huf_A 56 DIKEGVRYLFQTNNI-ATFCLSASGHGGMEATLCNL-LEDGDVILIGHTGHWGD--RS-ADMATRYGADVRVVKSK-VGQ 129 (393)
T ss_dssp HHHHHHHHHHTCCCS-EEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH--HH-HHHHHHTTCEEEEEECC-TTC
T ss_pred HHHHHHHHHhCCCCC-cEEEEcCcHHHHHHHHHHHH-hCCCCEEEEECCCcchH--HH-HHHHHHcCCeeEEEeCC-CCC
Confidence 999999999999753 37999999999999999998 789999765 4577752 33 44567789999999987 456
Q ss_pred ccCHHHHHHHHHh-cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 006746 253 RINSEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI 330 (632)
Q Consensus 253 ~i~~~~l~~~i~~-~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~ 330 (632)
.+++++|+++|++ + +++|++++.+|+||..+|++ |.++|+++|+++++|+++..+. .++++..+++|+++
T Consensus 130 ~~d~~~l~~~i~~~~------~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~ 201 (393)
T 2huf_A 130 SLSLDEIRDALLIHK------PSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGG--APMFMDRWEIDAMY 201 (393)
T ss_dssp CCCHHHHHHHHHHHC------CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEE
T ss_pred CCCHHHHHHHHhccC------CcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCcchhhcCccEEE
Confidence 7999999999986 4 48999999999999999999 9999999999999999998876 46777778899999
Q ss_pred Eccccc-cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccc
Q 006746 331 CSFYQI-FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM 409 (632)
Q Consensus 331 ~S~hK~-~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~ 409 (632)
+|+||+ +| |.|+|+++++++.++.+.+.... . .. |.... ........+... .
T Consensus 202 ~s~sK~l~g--~~G~G~~~~~~~~~~~~~~~~~~-~-------~~-~~~~~------------~~~~~~~~~~~~-~--- 254 (393)
T 2huf_A 202 TGSQKVLGA--PPGITPVSFSHRAVERYKRRNTK-V-------KV-YYWDM------------SLVGDYWGCFGR-P--- 254 (393)
T ss_dssp CCSSSTTCC--CSSCEEEEECHHHHHHHHTCSSC-C-------SC-GGGCH------------HHHHHHTTCSSS-C---
T ss_pred ECCCccccc--CCCeEEEEECHHHHHHHhhcCCC-C-------ce-EEEch------------HHHHhhhccccc-c---
Confidence 999996 55 78999999998877655432100 0 00 00000 000000000000 0
Q ss_pred hhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 006746 410 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT 489 (632)
Q Consensus 410 ~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~ 489 (632)
..+.|+++++.+.++. .+|+.+.+.|++.+.++.+.+.+++.+.|.++
T Consensus 255 ---~~~~~~~~~~~~~a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----- 302 (393)
T 2huf_A 255 ---RIYHHTISSTLLYGLR------------------------EAIAMACEEGLPALIARHEDCAKRLYRGLQDA----- 302 (393)
T ss_dssp ---CCCSCCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred ---CCCCCCCCHHHHHHHH------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 0023556666666665 78888877789999999999999999999987
Q ss_pred CCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccc
Q 006746 490 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK 568 (632)
Q Consensus 490 ~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~ 568 (632)
| +++++|.. ...+.++.|.+.+ | ++...+.+ |++++||.++.|..|.
T Consensus 303 -g---~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~g~~~~----------------------- 350 (393)
T 2huf_A 303 -G---FELYADPK-DRLSTVTTIKVPQ--G--VDWLKAAQYAMKTYLVEISGGLGPT----------------------- 350 (393)
T ss_dssp -T---CCBSSCGG-GBCTTEEEEECCT--T--CCHHHHHHHHHHHHCEECBCCCGGG-----------------------
T ss_pred -C---CeeccCcc-ccCCcEEEEEcCC--C--CCHHHHHHHHHHhCCEEEecCcccc-----------------------
Confidence 3 34455531 1124488888752 1 45555654 5566799998774220
Q ss_pred ccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 569 SKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 569 ~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|+ ++.++.+||+++++.|+++++.
T Consensus 351 -------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 351 -------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp -------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred -------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 235899999 5556899999999999998764
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=269.38 Aligned_cols=354 Identities=11% Similarity=0.080 Sum_probs=260.0
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
..|+.+.|-..+|..+++++.+.+.. + .+.. .. .+....+.++++|+.+++++|+++
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~-----~-------~~~~----~~------~~~~~~~~~~~~~~~la~~~g~~~- 60 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDE-----K-------IGVI----SH------RSKKFEEVYKTASDNLKTLLELPS- 60 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHT-----T-------TTTS----CT------TSHHHHHHHHHHHHHHHHHTTCCT-
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcC-----C-------ccCc----CC------CCHHHHHHHHHHHHHHHHHhCCCC-
Confidence 46888889889999999765443211 0 0000 00 011124778899999999999963
Q ss_pred CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCc
Q 006746 189 DYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK 268 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~ 268 (632)
..+|+||+|+|+|+.+++.++. ++ +.+++...+++ ..+ ...++..|++++.++.+ +++.+|+++|+ +++
T Consensus 61 ~~~v~~~~g~t~al~~~~~~l~-~~-~~i~~~~~~~~--~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~--~~~--- 129 (362)
T 3ffr_A 61 NYEVLFLASATEIWERIIQNCV-EK-KSFHCVNGSFS--KRF-YEFAGELGREAYKEEAA-FGKGFYPADIT--VPA--- 129 (362)
T ss_dssp TEEEEEESCHHHHHHHHHHHHC-SS-EEEEEECSHHH--HHH-HHHHHHTTCEEEEEECC-TTCCCCGGGCC--CCT---
T ss_pred CcEEEEeCCchHHHHHHHHhcc-CC-cEEEEcCcHHH--HHH-HHHHHHhCCCeEEEecC-CCCCCCHHHHh--ccC---
Confidence 3489999999999999999984 44 44556666664 233 44667889999999987 55678888887 333
Q ss_pred CCCceeEEEEeccCCCCccccchH-HHHHHhhC-CcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEE
Q 006746 269 KKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN-DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC 346 (632)
Q Consensus 269 ~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~-g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~ 346 (632)
+++++++++.+|+||..+|++ |.++|+++ |+++++|+++..+. .++++.. +|++++|+||++|. |.|+|+
T Consensus 130 ---~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~--~~~~~~~--~d~~~~s~~K~~~~-~~G~g~ 201 (362)
T 3ffr_A 130 ---DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPY--PKFDWTK--IDSVFFSVQKCFGL-PAGLGV 201 (362)
T ss_dssp ---TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTS--SCCCTTS--CSEEEEETTSTTCC-CSCCEE
T ss_pred ---CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCC--cccChhH--CcEEEEecccccCC-CCceEE
Confidence 469999999999999999999 99999999 99999999998886 4666654 89999999998885 779999
Q ss_pred EEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhh-hhccccCCCccchhhhhhcCCcccchh
Q 006746 347 LFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE-KVAATNTFSGPMSIEMRQSGKLEQGEI 424 (632)
Q Consensus 347 L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e-~e~gt~~f~~~~~~~~~~~Gt~~~~~i 424 (632)
++++++.++.+.+...| |.... ++. + ..+.+ .+.+. ..++++.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~gg~~~~~------~~~--------~------~~~~~~~~~~~------------~~~~~~~~~~ 249 (362)
T 3ffr_A 202 WILNDRVIEKSKALLAKRKSIGT------YHT--------I------PSMLEKARVNQ------------TPETPNAMNI 249 (362)
T ss_dssp EEEEHHHHHHHHHHHHTTCCCCS------TTS--------H------HHHHHHHTTTC------------CSSCCCHHHH
T ss_pred EEECHHHHHHhhhccccCCCCcc------ccc--------H------HHHHHHhhcCC------------CCCCchHHHH
Confidence 99999887766654333 22211 000 0 00000 01110 1355666666
Q ss_pred hHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCC
Q 006746 425 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF 504 (632)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~ 504 (632)
.++. .+++.+...|++.+.++.+.+.+++.+.|.++ |.++++.|....
T Consensus 250 ~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------~g~~~~~~~~~~ 297 (362)
T 3ffr_A 250 FLLG------------------------KVTGDMLQISADGIRKQTEEKAALINTYIESS--------KVFSFGVEDAKL 297 (362)
T ss_dssp HHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC--------SSEEESSSCGGG
T ss_pred HHHH------------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--------cCceeccCChhh
Confidence 6665 88888888899999999999999999999987 778888754333
Q ss_pred CCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCc
Q 006746 505 DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 584 (632)
Q Consensus 505 ~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 584 (632)
..+.++.|.+.+ +...+.+.+.++||.++.|..|. +.+
T Consensus 298 ~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~g~~~~------------------------------------~~~ 335 (362)
T 3ffr_A 298 RSMTTIVANTTM------LPGEINKILEPFDMAVGAGYGSK------------------------------------KET 335 (362)
T ss_dssp BCSSEEEEEESS------CHHHHHHHHGGGTEEEEECSGGG------------------------------------TTT
T ss_pred cCCceEEEecCC------CHHHHHHHHHHCCeEEecCcccc------------------------------------CCC
Confidence 457788888865 45566655555699999774221 236
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 585 VVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 585 ~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
.||+|++.+++.|||+++++.|++++
T Consensus 336 ~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 336 QIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999999999875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=270.23 Aligned_cols=365 Identities=16% Similarity=0.086 Sum_probs=270.6
Q ss_pred hhHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhH
Q 006746 91 YQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESG 170 (632)
Q Consensus 91 ~~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~ 170 (632)
...+++|+ +||.+. ...+|||+.+.+..++.+++++.+.+.. .|+....+
T Consensus 18 ~~~~~~r~-~~~~~~-~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------------------------~~~~~~~~ 67 (393)
T 1vjo_A 18 SINDNQRL-QLEPLE-VPSRLLLGPGPSNAHPSVLQAMNVSPVG----------------------------HLDPAFLA 67 (393)
T ss_dssp CCCCTTCC-CCCSCC-CCCCEECSSSCCCCCHHHHHHHSSCCCC----------------------------TTSHHHHH
T ss_pred eecchhhh-cCCccC-CccceeccCCCCCCCHHHHHHHhccccc----------------------------ccCHHHHH
Confidence 35567775 699885 4578999999999999999998664321 02212346
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
..+++++.+++++|++++ +.|+||+|+|+|+.+++.++ +++||+|++ ...|+++ . +...++..|++++.++.+
T Consensus 68 ~~~~~~~~la~~~g~~~~-~~v~~t~g~t~al~~~~~~~-~~~gd~Vl~~~~~~~~~--~-~~~~~~~~g~~~~~v~~~- 141 (393)
T 1vjo_A 68 LMDEIQSLLRYVWQTENP-LTIAVSGTGTAAMEATIANA-VEPGDVVLIGVAGYFGN--R-LVDMAGRYGADVRTISKP- 141 (393)
T ss_dssp HHHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH--H-HHHHHHHTTCEEEEEECC-
T ss_pred HHHHHHHHHHHHhCCCCC-cEEEEeCchHHHHHHHHHhc-cCCCCEEEEEcCChhHH--H-HHHHHHHcCCceEEEecC-
Confidence 788999999999999643 36999999999999999998 789999764 4566642 1 345567889999999997
Q ss_pred CccccCHHHHHHHHHh-cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 250 PRLRINSEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~-~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
+++.+++++|+++|++ + ++++++++.+|+||..+|++ |.++|+++|+++++|.++..|. .++++..+++|
T Consensus 142 ~~~~~d~~~l~~~l~~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~d 213 (393)
T 1vjo_A 142 WGEVFSLEELRTALETHR------PAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG--VPIFLDAWGVD 213 (393)
T ss_dssp TTCCCCHHHHHHHHHHHC------CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCS
T ss_pred CCCCCCHHHHHHHHhhCC------ceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccC--cCCcccccCcc
Confidence 4667999999999986 4 37999999999999999999 9999999999999999998876 47788888999
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccccCCC------CCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDN------TSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~------~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
++++|+||++|. |.|+|+++++++.++.+... ++.+.. |.. .+. ..+
T Consensus 214 i~~~s~sK~l~~-~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---------------~~~--~~~ 266 (393)
T 1vjo_A 214 LAYSCSQKGLGC-SPGASPFTMSSRAIEKLQRRRTKVANWYLDMN---------LLG---------------KYW--GSE 266 (393)
T ss_dssp EEECCSSSTTCS-CSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH---------HHH---------------HHH--STT
T ss_pred EEEEcCcccccC-CCceEEEEECHHHHHHHhccCCCCCceecCcH---------hhh---------------hhh--ccC
Confidence 999999997765 77999999998876655321 100000 000 000 000
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
.. ..|+++.+.+.++. .+|+.+.+.|++.+.++.+.+.+++.+.|
T Consensus 267 ~~-----------~~g~~~~~~~~a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L 311 (393)
T 1vjo_A 267 RV-----------YHHTAPINLYYALR------------------------EALRLIAQEGLANCWQRHQKNVEYLWERL 311 (393)
T ss_dssp CC-----------CCSCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCCCCHHHHHHHH------------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 00 12245566666665 78888777789999999999999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHH-HhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLA-DRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla-~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
.++ | +++++|.. ...+.++.|.+.+ | ++...+.+.+ +++||.++.|..|.
T Consensus 312 ~~~------g---~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~gi~v~~g~~~~--------------- 362 (393)
T 1vjo_A 312 EDI------G---LSLHVEKE-YRLPTLTTVCIPD--G--VDGKAVARRLLNEHNIEVGGGLGEL--------------- 362 (393)
T ss_dssp HHT------T---CCBSSCGG-GBCSSEEEEECCT--T--CCHHHHHHHHHHHHCEECEECCGGG---------------
T ss_pred HHc------C---CcccCCcc-ccCCcEEEEEcCC--C--CCHHHHHHHHHhhCCEEEecCcccc---------------
Confidence 987 3 34555532 2235678887753 1 4555555544 44599998774211
Q ss_pred hhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|+ ++.++.+|++++++.|+++++
T Consensus 363 ---------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 363 ---------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp ---------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ---------------------CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 236899995 677788899999999998864
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=269.09 Aligned_cols=348 Identities=12% Similarity=0.109 Sum_probs=246.5
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccc---ccccccchhHHHHHHHHHHHHHc
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT---QLLHGGQESGLESAMKKRIMDFL 183 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s---~~~~g~~~~~~~~~~R~~ia~~l 183 (632)
+.++|||++|..++|+.+++++.+.+.... ++..+ ...++....++.+++|+++++++
T Consensus 2 ~~~~~l~~~~~~~~~~~v~~a~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 62 (362)
T 2c0r_A 2 SERAYNFNAGPAALPLEVLERAQAEFVDYQ-------------------HTGMSIMEMSHRGAVYEAVHNEAQARLLALL 62 (362)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSST-------------------TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHT
T ss_pred CcceeeccCCCCCCCHHHHHHHHHHHhhhh-------------------hcCccccccCCCcHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999887654210 01011 00012223567889999999999
Q ss_pred CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC--Ccc-ccCHHHH
Q 006746 184 NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW--PRL-RINSEKL 259 (632)
Q Consensus 184 ~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~--~~~-~i~~~~l 259 (632)
|++++...|++|+|+|+|+++++.++ +++||+|++. ..+++ ..+ ...++..| +++.++++. ..+ .++.+++
T Consensus 63 g~~~~~~~i~~t~g~t~a~~~~~~~l-~~~gd~vl~~~~~~~~--~~~-~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~ 137 (362)
T 2c0r_A 63 GNPTGYKVLFIQGGASTQFAMIPMNF-LKEGQTANYVMTGSWA--SKA-LKEAKLIG-DTHVAASSEASNYMTLPKLQEI 137 (362)
T ss_dssp TCCSSEEEEEESSHHHHHHHHHHHHH-CCTTCEEEEEECSHHH--HHH-HHHHHHHS-CEEEEEECGGGTTCSCCCGGGC
T ss_pred CCCCCcEEEEECCCchHHHHHHHHhc-CCCCCeEEEEecCcHh--HHH-HHHHHHhC-CeEEEecccccccccCCCHHHc
Confidence 99753123578899999999999998 6899997643 44443 123 34556779 999998762 122 2455444
Q ss_pred HHHHHhcCcCCCceeEEEEeccCCCCccc-cchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccc
Q 006746 260 RKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF 337 (632)
Q Consensus 260 ~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~-~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~ 337 (632)
+ |++ +++++++++.+|+||.. .|++ | +|+++++|++|..+. .++++.++ |++++|+||++
T Consensus 138 ~--i~~------~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~--~~~~~~~~--d~~~~s~~K~~ 199 (362)
T 2c0r_A 138 Q--LQD------NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILS--RPFDLNQF--GLVYAGAQKNL 199 (362)
T ss_dssp C--CCT------TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTT
T ss_pred c--cCC------CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccC--CccchhHC--cEEEEeccccc
Confidence 2 332 46999999999999996 6787 6 799999999999987 47777654 99999999999
Q ss_pred CCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcC
Q 006746 338 GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG 417 (632)
Q Consensus 338 G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~G 417 (632)
| |.|+|+++++++.++.+.+.... ..+ |. ... +.+. ..+
T Consensus 200 g--~~G~G~l~~~~~~~~~l~~~~~~-~~~--------~~----------------~~~--~~~~------------~~~ 238 (362)
T 2c0r_A 200 G--PSGVTVVIVREDLVAESPKHLPT-MLR--------YD----------------TYV--KNNS------------LYN 238 (362)
T ss_dssp C--CSSCEEEEEEGGGSSSCCTTSCG-GGC--------HH----------------HHH--HTTT------------CSS
T ss_pred c--CcCcEEEEEcHHHHhhccccCch-HHh--------HH----------------HHh--hccC------------cCC
Confidence 9 88999999999887766542100 000 00 000 0000 135
Q ss_pred CcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEE
Q 006746 418 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVK 496 (632)
Q Consensus 418 t~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~ 496 (632)
|++.+.+.++. .+|+.+.+. |++.+.+|.+.++++|++.|.++ | ..++
T Consensus 239 t~~~~~~~a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~-~~~~ 287 (362)
T 2c0r_A 239 TPPSFGIYMVN------------------------EVLKWIEERGGLEGVQQANRKKASLIYDAIDQS------G-GFYR 287 (362)
T ss_dssp CCCHHHHHHHH------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS------T-TSSE
T ss_pred CchHHHHHHHH------------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------C-Cccc
Confidence 56666677776 899988877 79999999999999999999987 3 1225
Q ss_pred EECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccc
Q 006746 497 IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRK 576 (632)
Q Consensus 497 Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 576 (632)
++++.. ...+++++|.+.+ | ++...+.+.+.++||.++.|..
T Consensus 288 ~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~L~~~gi~~~~g~~--------------------------------- 329 (362)
T 2c0r_A 288 GCVDVD-SRSDMNITFRLAS--E--ELEKEFVKASEQEGFVGLKGHR--------------------------------- 329 (362)
T ss_dssp ESSCGG-GBCSSEEEEECSC--H--HHHHHHHHHHHHTTEESCBCCT---------------------------------
T ss_pred cCCChH-HcCCcEEEEEcCC--c--chHHHHHHHHHHCCCeeccCCC---------------------------------
Confidence 555421 2346788888753 1 3456666667778997765420
Q ss_pred ccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 577 DKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 577 ~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|++.++|.|||++|+++|++++.
T Consensus 330 -----~~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 330 -----SVGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp -----TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -----CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 124799999999999999999999998864
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=271.44 Aligned_cols=329 Identities=10% Similarity=0.068 Sum_probs=241.7
Q ss_pred ccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcC--CE
Q 006746 165 GGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRG--AR 241 (632)
Q Consensus 165 g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G--~~ 241 (632)
+....++++++|+++++++|++ ..|+||+|+|+|+++++..+ .+||+|+ ...+|++. .| ...++..| ++
T Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~--~~-~~~~~~~g~~~~ 101 (379)
T 3ke3_A 30 SKAFQEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSY--RW-TQILEKGKFAKS 101 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHH--HH-HHHHHHHCCSSE
T ss_pred CHHHHHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhH--HH-HHHHHHhCCCCc
Confidence 3345689999999999999997 27999999999999998765 5899976 45677753 33 34556666 48
Q ss_pred EEEEeccCC--------ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEecc
Q 006746 242 VMSAEFSWP--------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 242 v~~v~~~~~--------~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaa 309 (632)
++.++.++. .+.+++++++++|.+. +++++++++++|.||..+| ++ |.++|+++|+++++|++
T Consensus 102 ~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~ 176 (379)
T 3ke3_A 102 STVLTAERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI 176 (379)
T ss_dssp EEEEECEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred eEEEeccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 888887421 1358999999999642 2488999999999999999 99 99999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 310 ALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 310 q~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
|. |. .++++..+++|++++|+||++|. |.|+|+++++++.++.+.+....+. .... ..|.
T Consensus 177 ~~-g~--~~~~~~~~~~d~~~~s~~K~l~~-~~g~g~~~~~~~~~~~l~~~~~~~~---~~~~-~~~~------------ 236 (379)
T 3ke3_A 177 AS-GC--VWLDMKELGIDVLISAPQKGWSS-TPCAGLVMLSAAAIKKVESTESNCF---SLDL-KQWL------------ 236 (379)
T ss_dssp TC-TT--CCCCHHHHTCSEEEECTTTTTCS-CCCEEEEEECHHHHHHHHTCCCSCS---TTCH-HHHH------------
T ss_pred cc-CC--ccccccccCCCEEEecchhhcCC-CCceEEEEECHHHHHhhhcCCCCce---eecH-HHHH------------
Confidence 98 75 58888888999999999997765 8899999999998776654211000 0000 0010
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 469 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r 469 (632)
.....++.|..+| .+|++++.+.++. ++|+++.+.|++.+.+|
T Consensus 237 ---~~~~~~~~g~~~~----------~~t~~~~~~~a~~------------------------aal~~~~~~g~~~~~~~ 279 (379)
T 3ke3_A 237 ---TIMRAYENGGHAY----------HATMPTDSLRQFR------------------------DAILEAKEIGFDILRDA 279 (379)
T ss_dssp ---HHHHHHHTTSCCC----------SSCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHH
T ss_pred ---HHHHhhhccCCCC----------CCCCCHHHHHHHH------------------------HHHHHHHHhcHHHHHHH
Confidence 0000012332222 2467888888887 89999998999999999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEE-EEEEccCCCCccCHHH-HHHHHHhCCcEEccCccCChH
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL-AFNVFDWKREKIEPVL-VQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~iv-aFnv~~~~G~~i~~~~-V~kla~~~gI~lr~G~~c~~~ 547 (632)
.+.|.++|++.|.++ | ++++++. ..+.+++ .|.+.+ +.. ..+.+.++||.++.|..|..+
T Consensus 280 ~~~l~~~l~~~l~~~------g---~~~~~~~--~~~~~~i~~~~~~~-------~~~~~~~~L~~~Gi~v~~g~~~~~~ 341 (379)
T 3ke3_A 280 QWELGNRVRKVLTDK------G---IESVAAE--GFEAPGVVVSYTER-------DDMHKGSAFAEAGLQIAAGVPLKVG 341 (379)
T ss_dssp HHHHHHHHHHHHHHT------T---CCBSBCT--TCBCSSEEEEECSC-------HHHHSSHHHHHTTCCCEECCCCSSC
T ss_pred HHHHHHHHHHHHHHc------C---CEecCCc--cccCceEEEEccCC-------cchHHHHHHHHCCeEEeCCcccccc
Confidence 999999999999988 4 3455553 2456544 444432 222 245566789999888655421
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+.||+|++.++|.+||+++++.|+++++.
T Consensus 342 -------------------------------~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 342 -------------------------------EPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp -------------------------------CCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------------------------ccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 0113469999999999999999999999988764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=262.08 Aligned_cols=370 Identities=12% Similarity=0.041 Sum_probs=271.0
Q ss_pred ccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 101 YYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 101 f~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
|+.+. ....||...+-..++..+++++.+.... ++ +....+.++++|+.++
T Consensus 6 ~~~~~-~~~~~~~~pgp~~~~~~v~~a~~~~~~~--------~~--------------------~~~~~~~~~~~~~~la 56 (411)
T 3nnk_A 6 FSQLN-PPSRLLMGPGPINADPRVLRAMSSQLIG--------QY--------------------DPAMTHYMNEVMALYR 56 (411)
T ss_dssp SCSCC-CCCCEEESSSCCCCCHHHHHHHTSCCCC--------TT--------------------CHHHHHHHHHHHHHHH
T ss_pred ccccC-CccceeecCCCCCCCHHHHHHhhccccc--------cc--------------------cHHHHHHHHHHHHHHH
Confidence 45554 4567899889889999999997652200 00 0112367789999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHH
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKL 259 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l 259 (632)
+++|++++ ..|+||+|+|+|+.+++.++ +++||+|++ ...|+++. +...++..|++++.++++ .++.+|+++|
T Consensus 57 ~~~~~~~~-~~v~~~~sgt~al~~~~~~~-~~~gd~Vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~-~~~~~d~~~l 130 (411)
T 3nnk_A 57 GVFRTENR-WTMLVDGTSRAGIEAILVSA-IRPGDKVLVPVFGRFGHL---LCEIARRCRAEVHTIEVP-WGEVFTPDQV 130 (411)
T ss_dssp HHHTCCCS-EEEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHHHH---HHHHHHHTTCEEEEEECC-TTCCCCHHHH
T ss_pred HHhCCCCC-cEEEECCCcHHHHHHHHHHh-cCCCCEEEEecCCchHHH---HHHHHHHcCCeEEEEecC-CCCCCCHHHH
Confidence 99999854 35899999999999999999 889999764 55676532 345677889999999997 5677899999
Q ss_pred HHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccc-c
Q 006746 260 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQI-F 337 (632)
Q Consensus 260 ~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~-~ 337 (632)
+++|++. ++++|++++.+|+||...|++ |.++|+++|+++++|+++..+. .++++..+++|++++|+||+ +
T Consensus 131 ~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~d~~~~s~~K~l~ 203 (411)
T 3nnk_A 131 EDAVKRI-----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGG--NPLETDVWGLDAVSAGMQKCLG 203 (411)
T ss_dssp HHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTT--BCCCTTTTTCSEEECCSTTTTC
T ss_pred HHHHhhC-----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCC--cccchhccCCcEEEecCccccC
Confidence 9999862 248999999999999999999 9999999999999999998876 57888888999999999995 6
Q ss_pred CCCCCceEEEEEeCCCccccCC------CCCCCceee---cccccccccccccCCCCCCccccchhhhhhhccccCCCcc
Q 006746 338 GENPSGFGCLFVKKSTVPILVD------NTSSGMVSL---LPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP 408 (632)
Q Consensus 338 G~~P~G~G~L~Vr~~~~~~L~~------~~~gG~v~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~ 408 (632)
| |.|+|+++++++.++.+.+ .+.||.... ......++. + ....... +...
T Consensus 204 ~--~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~--------~------~~~~~~~-~~~~---- 262 (411)
T 3nnk_A 204 G--PSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFD--------L------GMVMDYW-GPER---- 262 (411)
T ss_dssp C--CSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTC--------H------HHHHHHH-STTC----
T ss_pred C--CCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccc--------h------HHHHhhh-cccc----
Confidence 6 7899999999987665443 233321100 000000000 0 0000000 0000
Q ss_pred chhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCC
Q 006746 409 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN 488 (632)
Q Consensus 409 ~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~ 488 (632)
...|+++++.+.++. .+++.+.+.|++.+.++.+.+.+++.+.|.++
T Consensus 263 -----~~~~~~~~~~~~a~~------------------------~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---- 309 (411)
T 3nnk_A 263 -----LNHHTEATTALFGAR------------------------ECARLILQEGLDYGIARHKLHGDALVKGIQAM---- 309 (411)
T ss_dssp -----CCCSCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred -----CCCCCCCHHHHHHHH------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----
Confidence 124667777777776 88998888899999999999999999999987
Q ss_pred CCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccc
Q 006746 489 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA 567 (632)
Q Consensus 489 ~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 567 (632)
| ++++.+.. ...+.++.|.+.+ | ++...+.+ |++++||.++.|..
T Consensus 310 --g---~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~l~~~l~~~~gi~v~~g~~------------------------ 355 (411)
T 3nnk_A 310 --G---LETFGDLK-HKMNNVLGVVIPQ--G--INGDQARKLMLEDFGIEIGTSFG------------------------ 355 (411)
T ss_dssp --T---CCBCSCGG-GBCSSEEEEECCT--T--CCHHHHHHHHHHHHSEEEEECCG------------------------
T ss_pred --C---CEeCCCcc-cccccEEEEECCC--C--CCHHHHHHHHHHhcCeEEeCccC------------------------
Confidence 3 34555532 2357788888753 1 45666655 55667999987620
Q ss_pred cccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 568 KSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+.||+|+ ++.+|.+||+++++.|+++++.
T Consensus 356 ------------~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 389 (411)
T 3nnk_A 356 ------------PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNY 389 (411)
T ss_dssp ------------GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence 01235999998 8888999999999999998875
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=256.99 Aligned_cols=340 Identities=14% Similarity=0.050 Sum_probs=255.1
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCc
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey 190 (632)
||.++|..+.|+.+++++.+.+... ++....+.+.+.|+.+++++|++++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~----------------------------~~~~~~~~~~~l~~~la~~~g~~~~-- 52 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHH----------------------------RTEAAREVFLKARGLLREAFRTEGE-- 52 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCT----------------------------TSHHHHHHHHHHHHHHHHHHTCSSE--
T ss_pred ccccCCCCCCCHHHHHHhccCCCCc----------------------------cCHHHHHHHHHHHHHHHHHhCCCCc--
Confidence 8999999999999999987643210 0111245678999999999999854
Q ss_pred cEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcC
Q 006746 191 GMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK 269 (632)
Q Consensus 191 ~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~ 269 (632)
.|++|+|+|+|+.+++.++ +++||+|++ ..+|++. . +...++..|++++.++++ +++.+++++|++ +
T Consensus 53 ~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~--~-~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~---~---- 120 (352)
T 1iug_A 53 VLILTGSGTLAMEALVKNL-FAPGERVLVPVYGKFSE--R-FYEIALEAGLVVERLDYP-YGDTPRPEDVAK---E---- 120 (352)
T ss_dssp EEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHHH--H-HHHHHHHTTCEEEEEECC-TTCCCCTTTSCC---S----
T ss_pred eEEEcCchHHHHHHHHHhc-cCCCCeEEEEeCCchhH--H-HHHHHHHcCCceEEEeCC-CCCCCCHHHHhc---c----
Confidence 7999999999999999998 789999765 4567762 2 345567789999999987 456678777755 2
Q ss_pred CCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccc-ccCCCCCceE
Q 006746 270 KKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQ-IFGENPSGFG 345 (632)
Q Consensus 270 ~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK-~~G~~P~G~G 345 (632)
+++++++++.+|+||..+|++ |.++|+++ |+++++|+++..+. .++++..+++|++++|+|| ++| |.|+|
T Consensus 121 --~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~--~~g~G 194 (352)
T 1iug_A 121 --GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV--GEVALEAMGVDAAASGSQKGLMC--PPGLG 194 (352)
T ss_dssp --SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT--BCCCSGGGTCSEEEEESSSTTCC--CSCEE
T ss_pred --CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccC--cceeccccCeeEEEecCcccccC--CCcee
Confidence 358999999999999999999 99999999 99999999998776 4677777789999999999 556 88999
Q ss_pred EEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhh
Q 006746 346 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS 425 (632)
Q Consensus 346 ~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~ 425 (632)
+++++++.++.+.+ ++.. .....++ .. ...+ ...|+++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~---~~~~---~~~~~~~-----------------~~--~~~~------------~~~~~~~~~~~~ 237 (352)
T 1iug_A 195 FVALSPRALERLKP---RGYY---LDLAREL-----------------KA--QKEG------------ESAWTPAINLVL 237 (352)
T ss_dssp EEEECHHHHHTCCC---CSST---TCHHHHH-----------------HH--HTTT------------CCSSCCCHHHHH
T ss_pred EEEECHHHHHHhhC---CCce---eeHHHHH-----------------hh--cccC------------CCCCCCCHHHHH
Confidence 99999887766654 1100 0000000 00 0000 013455666666
Q ss_pred HhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCC
Q 006746 426 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 505 (632)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~ 505 (632)
++. .+|+.+.+. ++.+.++.+.+.+++.+.|.++ | +++++|. .
T Consensus 238 a~~------------------------~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~ 280 (352)
T 1iug_A 238 AVA------------------------AVLEEVLPR-LEEHLALKAWQNALLYGVGEEG------G---LRPVPKR---F 280 (352)
T ss_dssp HHH------------------------HHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT------T---CEESCSS---B
T ss_pred HHH------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC------C---Ccccccc---c
Confidence 665 788877665 8899999999999999999986 3 4566553 2
Q ss_pred CCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcE
Q 006746 506 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV 585 (632)
Q Consensus 506 rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (632)
.+.++.|.+.+ | ++...+.+.+.++||.++.|..+ ...+.
T Consensus 281 ~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~~~~~------------------------------------~~~~~ 320 (352)
T 1iug_A 281 SPAVAAFYLPE--G--VPYARVKEAFAQRGAVIAGGQGP------------------------------------LKGKV 320 (352)
T ss_dssp CTTCEEEECCT--T--CCHHHHHHHHHTTTEECEECCGG------------------------------------GTTTE
T ss_pred CCeEEEEEcCC--C--CCHHHHHHHHHHCCEEEEeCCCc------------------------------------cCCCE
Confidence 56788888763 2 46666766666779999876410 12358
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 586 VTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 586 VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
||+|++.+++.+||+++++.|++++..
T Consensus 321 iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 321 FRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998753
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=255.40 Aligned_cols=345 Identities=12% Similarity=0.072 Sum_probs=256.0
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCc
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey 190 (632)
+|.++|..+.|+.+++++.+.+.. + ++....+.++++|+.+++++|++.+..
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~------------------------~----~~~~~~~~~~~l~~~la~~~g~~~~~~ 53 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRG------------------------H----LDPEVLRVNRAIQERLAALFDPGEGAL 53 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCC------------------------T----TCHHHHHHHHHHHHHHHHHHCCCTTCE
T ss_pred ccCCCCCCCCCHHHHHHHhccccc------------------------c----cCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 466788889999999987654321 0 111124667899999999999963334
Q ss_pred cEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcC
Q 006746 191 GMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK 269 (632)
Q Consensus 191 ~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~ 269 (632)
.|+||+|+|+|+.+++.++ .+ |+|+ ...+|++. .+ ...++..|++++.++.+ +++.+++++|++++++.
T Consensus 54 ~v~~t~g~t~a~~~~~~~~-~~--d~vl~~~~~~~~~--~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~~--- 123 (353)
T 2yrr_A 54 VAALAGSGSLGMEAGLANL-DR--GPVLVLVNGAFSQ--RV-AEMAALHGLDPEVLDFP-PGEPVDPEAVARALKRR--- 123 (353)
T ss_dssp EEEESSCHHHHHHHHHHTC-SC--CCEEEEECSHHHH--HH-HHHHHHTTCCEEEEECC-TTSCCCHHHHHHHHHHS---
T ss_pred eEEEcCCcHHHHHHHHHHh-cC--CcEEEEcCCCchH--HH-HHHHHHcCCceEEEeCC-CCCCCCHHHHHHHHHhC---
Confidence 7999999999999999988 33 6765 45577762 33 45667889999999997 56779999999999861
Q ss_pred CCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEE
Q 006746 270 KKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLF 348 (632)
Q Consensus 270 ~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~ 348 (632)
+++++++++.+|+||..+|++ |.++|+++|+++++|+++..+. .++++..+++|++++|+||+++. |.|+|+++
T Consensus 124 --~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~G~~~ 198 (353)
T 2yrr_A 124 --RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGM--LPFSMRAMGVDYAFTGSQKCLSA-PPGLAPIA 198 (353)
T ss_dssp --CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHTCSEEECCTTSTTCC-CSSCEEEE
T ss_pred --CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccc--ccccccccCceEEEecCcccccC-CCceEEEE
Confidence 248999999999999999999 9999999999999999998776 36677667899999999995443 77999999
Q ss_pred EeCCCccccCC--CCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhH
Q 006746 349 VKKSTVPILVD--NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 426 (632)
Q Consensus 349 Vr~~~~~~L~~--~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~ 426 (632)
++++.++.++. .++... . .+ .... ... ...|+++.+.+.+
T Consensus 199 ~~~~~~~~l~~~~~~~~~~-------~-~~----------------~~~~--~~~------------~~~~~~~~~~~~a 240 (353)
T 2yrr_A 199 ASLEARKAFTGKRGWYLDL-------A-RV----------------AEHW--ERG------------GYHHTTPVLLHYA 240 (353)
T ss_dssp ECHHHHHHCCCCSCSTTCH-------H-HH----------------HHHH--TTC------------CCSSCCCHHHHHH
T ss_pred ECHHHHHHhccCCCccccH-------H-HH----------------hhhh--hcC------------CCCCCCCHHHHHH
Confidence 99988766652 111000 0 00 0000 000 0134455555666
Q ss_pred hhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCC
Q 006746 427 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 506 (632)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~r 506 (632)
+. .+|+.+.+.|++.+.++.+.+.+++.+.|.++ | ++++++. ...
T Consensus 241 ~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~--~~~ 285 (353)
T 2yrr_A 241 LL------------------------EALDLVLEEGVAARERRAREVYAWVLEELKAR------G---FRPYPKA--SPL 285 (353)
T ss_dssp HH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CEESCSS--SBC
T ss_pred HH------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC------C---CccccCc--cCC
Confidence 65 78888877899999999999999999999886 3 4566642 124
Q ss_pred CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEE
Q 006746 507 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV 586 (632)
Q Consensus 507 g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V 586 (632)
+.++.|.+.+ | ++...+.+.+.++||.++.|..|. ..+.|
T Consensus 286 ~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~g~~~~------------------------------------~~~~i 325 (353)
T 2yrr_A 286 PTVLVVRPPE--G--VDADRLVRALYAEGVAVAGGIGPT------------------------------------RGQVL 325 (353)
T ss_dssp TTEEEEECCT--T--CCHHHHHHHHHHTTEECEECCGGG------------------------------------TTTCE
T ss_pred CeEEEEECCC--C--CCHHHHHHHHHHCCEEEeCCcccc------------------------------------CCCeE
Confidence 6677888752 1 466677766666799998774221 23589
Q ss_pred EEccCCCCCHHHHH-HHHHHHHHhhh
Q 006746 587 TASLGYLANFEDVY-RLWAFVAQFLD 611 (632)
Q Consensus 587 RvSlg~~~t~eDV~-rlv~~l~~~l~ 611 (632)
|+|++.+++.+|++ ++++.|+++++
T Consensus 326 Ri~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 326 RLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp EEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEecCccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999 99999998875
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-28 Score=260.45 Aligned_cols=366 Identities=15% Similarity=0.106 Sum_probs=264.4
Q ss_pred hccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 100 ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
.||.|. ...+|+++.+-..+++.+++++.+.+.. + |+......+++.|+.+
T Consensus 10 ~~~~~~-~~~~~~~~~~p~~~~~~v~~a~~~~~~~--------------------------~--~~~~~~~~~~~l~~~l 60 (396)
T 2ch1_A 10 LRNPLI-IPEKIMMGPGPSNCSKRVLTAMTNTVLS--------------------------N--FHAELFRTMDEVKDGL 60 (396)
T ss_dssp GSSCCC-CCCCBCCSSSSCCCCHHHHHHTTSCCCC--------------------------T--TCHHHHHHHHHHHHHH
T ss_pred cCCCCC-CCcceeecCCCCCCCHHHHHHhcccccc--------------------------C--CChhHHHHHHHHHHHH
Confidence 388885 5778999999889999999987553210 0 1111235678999999
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHH
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEK 258 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~ 258 (632)
++++|++++ +.|++|+|+|+|+.+++.++ +++||+|++ ...|++ ..+ ...++..|++++.++.+ +++.+|+++
T Consensus 61 a~~~~~~~~-~~v~~~~g~t~al~~~~~~~-~~~gd~vl~~~~~~~~--~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~ 134 (396)
T 2ch1_A 61 RYIFQTENR-ATMCVSGSAHAGMEAMLSNL-LEEGDRVLIAVNGIWA--ERA-VEMSERYGADVRTIEGP-PDRPFSLET 134 (396)
T ss_dssp HHHHTCCCS-CEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHH--HHH-HHHHHHTTCEEEEEECC-TTSCCCHHH
T ss_pred HHHhCCCCC-cEEEECCcHHHHHHHHHHHh-cCCCCeEEEEcCCccc--HHH-HHHHHHcCCceEEecCC-CCCCCCHHH
Confidence 999999754 36999999999999999998 789999764 456764 333 34567889999999987 567799999
Q ss_pred HHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccc
Q 006746 259 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF 337 (632)
Q Consensus 259 l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~ 337 (632)
|+++|++. ++++|++++.+|+||..+|++ |.++|+++|+++++|+++..|. .++++..+++|++++|+||++
T Consensus 135 l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~d~~~~s~~K~~ 207 (396)
T 2ch1_A 135 LARAIELH-----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG--VPFYMDKWEIDAVYTGAQKVL 207 (396)
T ss_dssp HHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCCEEECCCC-CC
T ss_pred HHHHHHhC-----CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccC--CccchhhcCcCEEEEcCCccc
Confidence 99999862 148999999999999999999 9999999999999999998876 477888889999999999965
Q ss_pred CCCCCceEEEEEeCCCccccCCCC--CCC-ceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhh
Q 006746 338 GENPSGFGCLFVKKSTVPILVDNT--SSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR 414 (632)
Q Consensus 338 G~~P~G~G~L~Vr~~~~~~L~~~~--~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~ 414 (632)
+. |.|+|+++++++.++.+.... .+. ..+.. ....+|... .. .. .
T Consensus 208 ~~-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------~~-~~---------~ 255 (396)
T 2ch1_A 208 GA-PPGITPISISPKALDVIRNRRTKSKVFYWDLL-LLGNYWGCY--------------------DE-PK---------R 255 (396)
T ss_dssp CC-CSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH-HHHHHTTCS--------------------SS-CC---------C
T ss_pred cC-CCCeEEEEECHHHHHhhhhccCcccceEechH-HHHHhhhhh--------------------cc-cC---------C
Confidence 54 789999999987776554321 010 00000 000001000 00 00 0
Q ss_pred hcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCc
Q 006746 415 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL 494 (632)
Q Consensus 415 ~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~ 494 (632)
..|+++.+.+.++. .+|+.+.+.+++.+.++.+.+.+++.+.|.++ |
T Consensus 256 ~~~~~~~~~~~a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g--- 302 (396)
T 2ch1_A 256 YHHTVASNLIFALR------------------------EALAQIAEEGLENQIKRRIECAQILYEGLGKM------G--- 302 (396)
T ss_dssp CCCCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH------T---
T ss_pred CCCCCcHHHHHHHH------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC------C---
Confidence 13445555555554 78888766789999999999999999999987 4
Q ss_pred EEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccc
Q 006746 495 VKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 573 (632)
Q Consensus 495 v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 573 (632)
++++.|......+.++.|.+.+ | ++...+.+ |++++||.++.|..|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~g~~~----------------------------- 349 (396)
T 2ch1_A 303 LDIFVKDPRHRLPTVTGIMIPK--G--VDWWKVSQYAMNNFSLEVQGGLGP----------------------------- 349 (396)
T ss_dssp CCBSSCSGGGBCTTEEEEECCT--T--CCHHHHHHHHHHHHCBCCBCCCGG-----------------------------
T ss_pred CeeccCCccccCCceEEEEcCC--C--CCHHHHHHHHHHhCCEEEecCccc-----------------------------
Confidence 3455553212234588888752 2 45666654 555679999876421
Q ss_pred cccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 574 NRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 574 ~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.||+|+ ++.++.||++++++.|+++++.
T Consensus 350 -------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 350 -------TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp -------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred -------cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 0235899999 6778999999999999998864
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=254.44 Aligned_cols=357 Identities=13% Similarity=0.104 Sum_probs=254.7
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
...|+...|-..+++.+++++...... + .++. ....+.+.|+.++++++...
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~--------~------------~~~~--------~~~~~~~~~~~l~~~~~~~~ 55 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLG--------H------------TSPE--------FVSIFQRVLKNTRAVFKSAA 55 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCC--------T------------TSHH--------HHHHHHHHHHHHHHHTTCCG
T ss_pred ccceeecCCCcCchHHHHHHHhccccc--------c------------CCHH--------HHHHHHHHHHHHHHHhCCCC
Confidence 355788888888889888886543210 0 1221 12355678888888888741
Q ss_pred --CCccEEEeCCHHHHHHHHHhhCC--CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec-cCCccccCHHHHHH
Q 006746 188 --NDYGMVFTANRTSAFKLLAESYP--FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF-SWPRLRINSEKLRK 261 (632)
Q Consensus 188 --~ey~vvft~naT~al~lv~~sl~--~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~-~~~~~~i~~~~l~~ 261 (632)
+...|+||+|+|+|+.+++.++. +++||+|++. ..++...+ ...++..|++++.+++ + .++.+|+++|++
T Consensus 56 ~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~ 131 (385)
T 2bkw_A 56 ASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVVRPLK-IGESVPLELITE 131 (385)
T ss_dssp GGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEECCSS-TTSCCCHHHHHH
T ss_pred CCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEEecCC-CCCCCCHHHHHH
Confidence 11379999999999999999874 3789997654 44443222 2455778999999998 6 567799999999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccC
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFG 338 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G 338 (632)
+|++. ++++|++++.+|+||..+|++ |.++|+++ |+++++|+++..+. .++++..+++|++++|+||+++
T Consensus 132 ~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~ 204 (385)
T 2bkw_A 132 KLSQN-----SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC--EEFEFDEWGVDFALTASQKAIG 204 (385)
T ss_dssp HHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTC
T ss_pred HHhcC-----CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCC--ccccccccCceEEEecCccccc
Confidence 99862 248999999999999999999 99999999 99999999998876 4677888899999999999554
Q ss_pred CCCCceEEEEEeCCCcc-ccCC------CCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchh
Q 006746 339 ENPSGFGCLFVKKSTVP-ILVD------NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI 411 (632)
Q Consensus 339 ~~P~G~G~L~Vr~~~~~-~L~~------~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~ 411 (632)
. |.|+|+++++++.++ .+++ ..+++... .|. +....++.++..
T Consensus 205 ~-~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~---------------~~~~~~~~~~~~------- 254 (385)
T 2bkw_A 205 A-PAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLR-------RWT---------------PIMENYEAGKGA------- 254 (385)
T ss_dssp C-CSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHH-------HHH---------------HHHHHHHTTCCC-------
T ss_pred c-CCcceEEEEcHHHHHHHHhhccCCCCCceeecHH-------HHh---------------hHHHhhhccCCC-------
Confidence 3 789999999988766 5531 11111100 000 000001111100
Q ss_pred hhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH-HccCCCCCC
Q 006746 412 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL-MKLQHPNTE 490 (632)
Q Consensus 412 ~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L-~~l~h~~~~ 490 (632)
+.++++++.+.++. .+|+.+.+.|++.+.++.+.+.++|.+.| .++
T Consensus 255 ---~~~~~~~~~~~a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------ 301 (385)
T 2bkw_A 255 ---YFATPPVQLINSLD------------------------VALKEILEEGLHKRWDLHREMSDWFKDSLVNGL------ 301 (385)
T ss_dssp ---CSSCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT------
T ss_pred ---CCCCCCHHHHHHHH------------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 12456666666665 88988877799999999999999999999 776
Q ss_pred CCCcEEEECCCCCC-CCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccc
Q 006746 491 GNALVKIYGPKIRF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS 569 (632)
Q Consensus 491 G~p~v~Iygp~~~~-~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 569 (632)
| ++++.|.... ..+.++.|.+.+ ...+.+.+.++||.++.|..+.
T Consensus 302 g---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~gi~v~~g~~~~------------------------ 347 (385)
T 2bkw_A 302 Q---LTSVSRYPSNMSAHGLTAVYVAD-------PPDVIAFLKSHGVVIAGGIHKD------------------------ 347 (385)
T ss_dssp C---CEESSCSSSTTBCSSCEEEECSC-------HHHHHHHHHHTTEECBCCCCTT------------------------
T ss_pred C---ceecccCcccccCCceEEEecCC-------HHHHHHHHHHCCeEEeCCCCcc------------------------
Confidence 3 5666543212 367888888753 3445555567899998774321
Q ss_pred cccccccccCCCCCcEEEEc-cC---CCCCHHHHHHHHHHHHHhhh
Q 006746 570 KSDNNRKDKANLGITVVTAS-LG---YLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 570 ~~~~~~~~~~~~~~~~VRvS-lg---~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+.||+| ++ +.+|.|||+++++.|+++++
T Consensus 348 -----------~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 348 -----------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp -----------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred -----------cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 123689999 76 35899999999999998865
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=256.24 Aligned_cols=327 Identities=13% Similarity=0.104 Sum_probs=245.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.++++|+.+++++|++++ ..+++|+|+|+|+.+++.++ +++||+|++ ...|+++. +...++..|++++.+++
T Consensus 43 ~~~~~~l~~~la~~~g~~~~-~~~~~~~s~t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~ 117 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNR-WAYPIDGTSRAGIEAVLASV-IEPEDDVLIPIYGRFGYL---LTEIAERYGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCS-EEEEEESCHHHHHHHHHHHH-CCTTCEEEEEESSHHHHH---HHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCC-cEEEecCcHHHHHHHHHHHh-cCCCCEEEEecCCcccHH---HHHHHHhcCCeeEEEec
Confidence 46788999999999999854 24459999999999999999 899999764 56776522 34567888999999999
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+ +++.+|+++|+++|++. ++++|++++.+|+||...|++ |.++|+++|+++++|++|..+. .++++..+++
T Consensus 118 ~-~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~ 189 (416)
T 3isl_A 118 E-WGTVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGG--CEVKVDEWKI 189 (416)
T ss_dssp C-TTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTT--SCCCTTTTTC
T ss_pred C-CCCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccC--CCcchhhcCC
Confidence 8 56788999999999842 248999999999999999999 9999999999999999998886 5788888899
Q ss_pred cEEEEccccc-cCCCCCceEEEEEeCCCccccCCCC---------------CCCceeecccccccccccccCCCCCCccc
Q 006746 327 DFLICSFYQI-FGENPSGFGCLFVKKSTVPILVDNT---------------SSGMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 327 Df~~~S~hK~-~G~~P~G~G~L~Vr~~~~~~L~~~~---------------~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
|++++|+||+ +| |.|+|+++++++.++.+.+.. .||.. .. ..++ .
T Consensus 190 d~~~~s~~K~l~g--~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~-~~---~~~~----------~--- 250 (416)
T 3isl_A 190 DAAIGGTQKCLSV--PSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRP-IT---SNYF----------D--- 250 (416)
T ss_dssp SEEECCSSSTTCC--CSSEEEEEECHHHHHHHHTC------------------CCC-CS---CSTT----------C---
T ss_pred CEEEecCccccCC--CCCeEEEEECHHHHHHhhccccccccccccccchhccCCCC-CC---cccc----------c---
Confidence 9999999995 66 889999999998877665421 11110 00 0000 0
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 470 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~ 470 (632)
.+.+.. ...... ...|+++.+.+.++. .+++.+...|++.+.++.
T Consensus 251 -~~~~~~-~~~~~~---------~~~~~~~~~~~~a~~------------------------~al~~~~~~g~~~~~~~~ 295 (416)
T 3isl_A 251 -LSQLED-YWSERR---------LNHHTEATTMLYALR------------------------EGVRLVLEEGLETRFERH 295 (416)
T ss_dssp -HHHHHH-HTSTTC---------CCSSCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHH
T ss_pred -hHHHHh-hhcccC---------CCCCCCCHHHHHHHH------------------------HHHHHHHHhhHHHHHHHH
Confidence 000000 000000 124667777777776 889988888999999999
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHH
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~ 549 (632)
+.+.+++.+.|.++ | +++++|.. ...+.++.|.+++. ++...+.+ |++++||.++.|..
T Consensus 296 ~~~~~~l~~~L~~~------g---~~~~~~~~-~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~g~~------ 355 (416)
T 3isl_A 296 RHHEAALAAGIKAM------G---LRLFGDDS-CKMPVVTCVEIPGG----IDGESVRDMLLAQFGIEIASSFG------ 355 (416)
T ss_dssp HHHHHHHHHHHHHT------T---CCBCSCGG-GBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECBCCCS------
T ss_pred HHHHHHHHHHHHHc------C---CEeccCcc-ccCCcEEEEeCCCC----CCHHHHHHHHHHhCCEEEecCCC------
Confidence 99999999999986 3 44556542 23467888888531 45566655 44556999987630
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHH-HHHHHHHHHHhhhh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFED-VYRLWAFVAQFLDA 612 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eD-V~rlv~~l~~~l~~ 612 (632)
....+.||+|++.+++.+| |+++++.|+++++.
T Consensus 356 ------------------------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 356 ------------------------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp ------------------------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence 1134699999988887777 99999999998875
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-28 Score=255.67 Aligned_cols=352 Identities=11% Similarity=0.069 Sum_probs=253.7
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
.+|+-+.|-.++|+.+++++.+.+..+ ++....+.++++++.+++++|++++
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~~~----------------------------~~~~~~~~~~~~~~~la~~~g~~~~ 70 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVPYF----------------------------RTTEFSSTMLENEKFMLEYAKAPEG 70 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCCCC----------------------------SSHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CceeecCCCCCCcHHHHHHhcCCCCCC----------------------------CCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 556667778889999999976532100 0111246778999999999999754
Q ss_pred CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcC
Q 006746 189 DYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG 267 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~ 267 (632)
...+++|+|+|+|+++++.++ .++||+|++. ..+++ ..+ ...++..|+++..++.+ .++.+|+++|+++++++
T Consensus 71 ~~~i~~~~ggt~al~~~~~~~-~~~gd~vi~~~~~~~~--~~~-~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~~~~~- 144 (376)
T 3f0h_A 71 SKAVFMTCSSTGSMEAVVMNC-FTKKDKVLVIDGGSFG--HRF-VQLCEIHEIPYVALKLE-HGKKLTKEKLYEYDNQN- 144 (376)
T ss_dssp CEEEEESSCHHHHHHHHHHHH-CCTTCCEEEEESSHHH--HHH-HHHHHHTTCCEEEEECC-TTCCCCHHHHHTTTTSC-
T ss_pred ceEEEEcCChhHHHHHHHHhc-cCCCCeEEEEeCChhh--HHH-HHHHHHcCCceEEEeCC-CCCCCCHHHHHHhhccC-
Confidence 334445999999999999998 6899997654 34553 222 34567789999999987 55679999998876543
Q ss_pred cCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEE
Q 006746 268 KKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC 346 (632)
Q Consensus 268 ~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~ 346 (632)
++++++++.+|+||..+|++ |.++|+++|+++++|++|..+. .++++..+++|++++|+||++|. |.|+|+
T Consensus 145 -----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~~d~~~~s~~K~l~~-~~G~g~ 216 (376)
T 3f0h_A 145 -----FTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLA--DPFNMNECGADVMITGSQKVLAC-PPGISV 216 (376)
T ss_dssp -----CCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHTCSEEEEETTTTTCC-CSSCEE
T ss_pred -----ceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccC--ccccccccCccEEEecCcccccC-CCceEE
Confidence 58999999999999999999 9999999999999999998876 46777778899999999998875 779999
Q ss_pred EEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhH
Q 006746 347 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 426 (632)
Q Consensus 347 L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~ 426 (632)
++++++.++.+.+....+.. .....++ ... ...++ ..++++..+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------~~~--~~~~~-------------~~~~~~~~~~a 262 (376)
T 3f0h_A 217 IVLAPRGVERVEKSKVRTMY---FDLKDAL----------------KNQ--ERGQT-------------PFTPAVGILLQ 262 (376)
T ss_dssp EEECHHHHHHHHTCCCCCST---TCHHHHH----------------HHH--TTTCC-------------SSCCCHHHHHH
T ss_pred EEECHHHHHHhhcCCCCcee---ecHHHHH----------------hhc--ccCCC-------------CCCCcHHHHHH
Confidence 99999887666542211100 0000000 000 00111 11223333355
Q ss_pred hhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCC
Q 006746 427 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 505 (632)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~ 505 (632)
+. ++++.+.+. |++.+.++.+.+.+++.+.|.++ | ++++.+. .
T Consensus 263 ~~------------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~---~~~~~~~---~ 306 (376)
T 3f0h_A 263 IN------------------------ERLKEIKKHGGADAEVARIASQAADFRAKIKDL------P---FELVSES---P 306 (376)
T ss_dssp HH------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS------S---EEECCSS---B
T ss_pred HH------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc------C---CccCccc---c
Confidence 54 788888887 69999999999999999999887 3 5666542 3
Q ss_pred CCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCc
Q 006746 506 RGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 584 (632)
Q Consensus 506 rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 584 (632)
...++.+...+ ++...+.+ |.++.||.++.|. + ....+
T Consensus 307 ~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~----~--------------------------------~~~~~ 345 (376)
T 3f0h_A 307 ANGVTSVHPTT-----ANAYDIFLKLKDEYGIWICPNG----G--------------------------------EMKDT 345 (376)
T ss_dssp BTTEEEEEESS-----SCHHHHHHHHHHHSSEECEECC----G--------------------------------GGTTT
T ss_pred CceEEEEeCCC-----CCHHHHHHHHHHhCCEEEecCc----c--------------------------------ccCCC
Confidence 45666666443 45566654 5555599998762 0 01236
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 585 VVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 585 ~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
+||+|++.++|.|||+++++.|+++++..
T Consensus 346 ~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 346 IFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999998754
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=247.77 Aligned_cols=323 Identities=11% Similarity=0.076 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+++.|+++++++|.+.+...|+||+|+|+|+.+++.++ .++||+|+ ....+|.. .+...++..|++++.++++
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~-~~~gd~vi~~~~~~~~~---~~~~~~~~~g~~~~~v~~~ 112 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA-LGPQDKVLIVSNGAYGA---RMVEMAGLMGIAHHAYDCG 112 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS-CCTTCCEEEEESSHHHH---HHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh-cCCCCeEEEEeCCCccH---HHHHHHHHhCCceEEEeCC
Confidence 4567899999999994322136999999999999999999 57899865 43333321 1234567789999999987
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
+.+.+|+++|+++|++++ +++++++++.+|+||..+|++ |.++|+++|+++++|+++..+. .++++..+++|
T Consensus 113 -~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~d 185 (366)
T 1m32_A 113 -EVARPDVQAIDAILNADP----TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGG--IPMDIAALHID 185 (366)
T ss_dssp -TTSCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCS
T ss_pred -CCCCCCHHHHHHHHhcCC----CeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccC--cCccccccCcc
Confidence 567799999999998632 358899999999999999999 9999999999999999998876 46777778899
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCc
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 407 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~ 407 (632)
++++|+||+++. |.|+|+++++++.++.+.+...+ . .......|. .+. ...++
T Consensus 186 i~~~s~~K~~~~-~~g~G~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~----------------~~~-~~~~~----- 238 (366)
T 1m32_A 186 YLISSANKCIQG-VPGFAFVIAREQKLAACKGHSRS-L---SLDLYAQWR----------------CME-DNHGK----- 238 (366)
T ss_dssp EEEEESSSTTCC-CSSEEEEEEEHHHHTTCTTCCSC-S---TTCHHHHHH----------------HHH-HTTTC-----
T ss_pred EEEecCcccccC-CCceEEEEECHHHHHhhcCCCCC-c---cccHHHHHh----------------hhc-ccCCC-----
Confidence 999999996533 88999999999877666542110 0 000000000 000 00011
Q ss_pred cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHccCC
Q 006746 408 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQH 486 (632)
Q Consensus 408 ~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G-l~~I~~r~~~L~~~L~~~L~~l~h 486 (632)
+.++++.+.+.++. ++|+.+.+.| ++.+.++.+.+.+++.+.|.++
T Consensus 239 -------~~~~~~~~~~~a~~------------------------~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-- 285 (366)
T 1m32_A 239 -------WRFTSPTHTVLAFA------------------------QALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-- 285 (366)
T ss_dssp -------CSSCCCHHHHHHHH------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred -------CCCCCCHHHHHHHH------------------------HHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--
Confidence 12344555555555 8888888878 8999999999999999999987
Q ss_pred CCCCCCCcEEEECCCCCCCCCc-EEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhc
Q 006746 487 PNTEGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 565 (632)
Q Consensus 487 ~~~~G~p~v~Iygp~~~~~rg~-ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~ 565 (632)
| ++++.|.. .+++ ++.|.+.+..+ ++...+.+.+.++||.++.|..|
T Consensus 286 ----~---~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~--------------------- 333 (366)
T 1m32_A 286 ----G---FNTLLDDE--LHSPIITAFYSPEDPQ--YRFSEFYRRLKEQGFVIYPGKVS--------------------- 333 (366)
T ss_dssp ----T---CCBSSCGG--GBCSSEEEEECCCCTT--CCHHHHHHHHHHTTEECEECCCS---------------------
T ss_pred ----C---CeeccCch--hcCceEEEEEcCccCC--CCHHHHHHHHHHCCEEEECCcCC---------------------
Confidence 3 34445421 2444 88888763111 46666766666679999876433
Q ss_pred cccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 566 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|++.+++.+||+++++.|+++++
T Consensus 334 ----------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 334 ----------------QSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp ----------------SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred ----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 235899999999999999999999998865
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=275.19 Aligned_cols=392 Identities=11% Similarity=-0.001 Sum_probs=249.5
Q ss_pred HHHHHHHHHHh--CCCCCCc-hhHHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhc--CCCCCCCCCCCCCCCCc
Q 006746 73 LQQSLTEFTKA--YPQYFDT-YQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQES--SPSHLRPSLPSQNLDIP 147 (632)
Q Consensus 73 l~~a~~~F~~~--~p~y~~~-~~~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~--~~~~~~~~~P~~~~~~p 147 (632)
.++...+.+.. .|+.+.+ .++.++|+ +|+.+ +..+||||+++|++|..|++++.. +..... | .+
T Consensus 45 ~~~~~~~~~~~~~lp~~g~~~~~i~~~~~-~~~~~--~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~---~-----~~ 113 (456)
T 2z67_A 45 YLKEIEDVFNHRKIPENGIDDEKIKLFLK-FLSMM--DTDKDPKSVRIGEREARTYSKIHEELSSGFCH---G-----IG 113 (456)
T ss_dssp HTHHHHHHHHHCSCCSSCCCHHHHHHHHH-HHHTT--BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTT---C-----BS
T ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHH-HHHhc--cccccccccccccccccccccccCccccccCC---C-----cc
Confidence 33334444432 4655543 56888886 69988 568999999999999998887653 111000 0 00
Q ss_pred cccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHH-HHHHHHhhC-CCCCCCeEE-Eecccc
Q 006746 148 FFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTS-AFKLLAESY-PFMSVKNLL-TVYDYE 224 (632)
Q Consensus 148 ~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~-al~lv~~sl-~~~~gd~il-t~~d~~ 224 (632)
.. -.+...|+. ...+....++++++|+.+++++|++++ ++||+|+|+ ++-+++.++ .+.++++|+ +..+|+
T Consensus 114 ~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~g~~~~---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~ 187 (456)
T 2z67_A 114 RS-GNLVDPQPK--ASGASIMYALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHK 187 (456)
T ss_dssp BT-TBTTSCCTT--BHHHHHHHHHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_pred HH-HHHHhhCcc--cccCcHHHHHHHHHHHHHHHHcCCCCC---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcH
Confidence 00 001112331 111112457889999999999999853 999999995 443233332 122566666 445666
Q ss_pred chhhHHHHHHHHhcCCEEEEEecc--CCccccCHHHHHHHH-HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC
Q 006746 225 SEAVEAMIRTSEKRGARVMSAEFS--WPRLRINSEKLRKMV-VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN 300 (632)
Q Consensus 225 s~~v~~~~~~a~~~G~~v~~v~~~--~~~~~i~~~~l~~~i-~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~ 300 (632)
+ + ...++..|++++.++.. ..++.+|+++|+++| ++.. +.++.+++++..+|.||...|++ |.++|+++
T Consensus 188 s--~---~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~ 260 (456)
T 2z67_A 188 S--P---IKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIE--LGNRPCVLSTLTFFPPRNSDDIVEIAKICENY 260 (456)
T ss_dssp H--H---HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHH--TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH
T ss_pred H--H---HHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhh--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc
Confidence 4 2 34556789999999873 256789999999999 4310 01357777888889999999999 99999999
Q ss_pred CcEEEEecc---ccCCCCCCCCCCCCC--CCcEEEEccccccCCCCCceEEEEEeC-CCccccCCCCCCCceeecccccc
Q 006746 301 DWHILIDAC---ALGPKDMDSFGLSLV--RPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQ 374 (632)
Q Consensus 301 g~~vlvDaa---q~~g~~m~~ldls~~--~~Df~~~S~hK~~G~~P~G~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~ 374 (632)
|++++||+| |..|. .+++++.+ ++|++++|+||+++. |.|+|+|++|+ +.+..+.+.+.|+.
T Consensus 261 g~~v~vD~A~~~~~~g~--~~~~~~~~~~~~D~~~~s~hK~~~~-p~g~G~l~~~~~~~~~~l~~~~~g~~--------- 328 (456)
T 2z67_A 261 DIPHIINGAYAIQNNYY--LEKLKKAFKYRVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPGRA--------- 328 (456)
T ss_dssp TCCEEEECTTTTTCHHH--HHHHHHHHTSCCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCSCB---------
T ss_pred CCcEEEECcchHHHHHh--hHHHHHhhCCCCCEEEEcCCCCcCC-CCCeEEEEEcCHHHHhhcCcCCCCCC---------
Confidence 999999965 44443 24444334 799999999997554 89999999964 55555554443310
Q ss_pred cccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhH
Q 006746 375 LWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRG 454 (632)
Q Consensus 375 ~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 454 (632)
.++ + +.++. .+
T Consensus 329 -------------------------~~~-------------------~-~~~~~------------------------aa 339 (456)
T 2z67_A 329 -------------------------SAT-------------------P-VVNTL------------------------VS 339 (456)
T ss_dssp -------------------------CSH-------------------H-HHHHH------------------------HH
T ss_pred -------------------------CCC-------------------H-HHHHH------------------------HH
Confidence 000 0 11121 56
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhC
Q 006746 455 LDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRE 534 (632)
Q Consensus 455 Ld~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~ 534 (632)
+..+...|++.+.++.+.++++|.+.|.++.+.. .+.+++|. ++++|++... + . ...+.+.+.+.
T Consensus 340 l~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-----g~~v~~~~------~~v~~~~~~~-~--~-~~~l~~~L~~~ 404 (456)
T 2z67_A 340 LLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKT-----GGKFLDVE------SPIASCISVN-S--D-PVEIAAKLYNL 404 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----SCCBCCCC------CSSEEEEECS-S--C-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----CCEecCCC------CeEEEEEecc-c--H-HHHHHHHHHHc
Confidence 6666667899999999999999999999872110 35555552 7788887311 1 1 34455545556
Q ss_pred CcE-EccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 535 NIS-LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 535 gI~-lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
||. +|... ..+ .+ . +..|. ....+.||+|+++++|.|||+++++.|++++
T Consensus 405 gi~~~rv~~--~~g---~f--------~-G~~~~------------~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 405 RVTGPRGIK--KTD---HF--------G-NCYLG------------TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp TEESCEEEC--TTC---HH--------H-HTCSS------------CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CCCcceEEe--ecC---cc--------c-ccccc------------ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 651 22210 000 00 0 11111 1134699999999999999999999998764
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=250.20 Aligned_cols=362 Identities=14% Similarity=0.086 Sum_probs=261.3
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
...||+..+-..++..+++++.+.... + +.....+.+++.|+.++++++.++
T Consensus 22 ~~~~~~~p~p~~~~~~v~~a~~~~~~~--------------------------~--~~~~~~~~~~~l~~~la~~~~~~~ 73 (393)
T 3kgw_A 22 PTRLLLGPGPSNLAPRVLAAGSLRMIG--------------------------H--MQKEMLQIMEEIKQGIQYVFQTRN 73 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHTTCCCCC--------------------------T--TSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccceeccCCCCCCCHHHHHHhcccccC--------------------------c--ccHHHHHHHHHHHHHHHHHhCCCC
Confidence 355888888889999999997542210 0 000123667899999999999974
Q ss_pred CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhc
Q 006746 188 NDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
+..|+||+|+|+|+.+++.++ +++||+|++. +.|++. .+...++..|++++.++++ +++.+|+++|+++|++.
T Consensus 74 -~~~v~~~~gg~~al~~~~~~~-~~~gd~vl~~~~~~~~~---~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~ 147 (393)
T 3kgw_A 74 -PLTLVVSGSGHCAMETALFNL-LEPGDSFLTGTNGIWGM---RAAEIADRIGARVHQMIKK-PGEHYTLQEVEEGLAQH 147 (393)
T ss_dssp -SEEEEESCCTTTHHHHHHHHH-CCTTCEEEEEESSHHHH---HHHHHHHHTTCEEEEEECC-TTCCCCHHHHHHHHHHH
T ss_pred -CcEEEEeCCcHHHHHHHHHhc-CCCCCEEEEEeCCchhH---HHHHHHHHcCCceEEEeCC-CCCCCCHHHHHHHHhhC
Confidence 346999999999999999999 8999997654 555432 2245667889999999987 55679999999999872
Q ss_pred CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceE
Q 006746 267 GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFG 345 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G 345 (632)
++++|++++.+|+||..+|++ |.++|+++|+++++|+++..|. .++++..+++|++++|+||+++. |.|+|
T Consensus 148 -----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~--~~~~~~~~~~d~~~~s~sK~~~~-~~g~g 219 (393)
T 3kgw_A 148 -----KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGG--VPIYMDQQGIDIMYSSSQKVLNA-PPGIS 219 (393)
T ss_dssp -----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTT--SCCCTTTTTCCEEEEESSSTTCC-CSSCE
T ss_pred -----CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccC--cccchhhcCCCEEEecCcccccC-CCcee
Confidence 248999999999999999999 9999999999999999998776 47788888999999999995543 78999
Q ss_pred EEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhh
Q 006746 346 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS 425 (632)
Q Consensus 346 ~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~ 425 (632)
+++++++.++.+.+...+ ... ++.. + ........+.. .. ....+++++..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~-~~~-------~~~~-------~------~~~~~~~~~~~-~~------~~~~~~~~~~~~~ 271 (393)
T 3kgw_A 220 LISFNDKAKYKVYSRKTK-PVS-------FYTD-------I------TYLAKLWGCEG-ET------RVIHHTTPVTSLY 271 (393)
T ss_dssp EEEECHHHHHHHHTCSSC-CSC-------STTC-------H------HHHHHHTTCSS-SC------CCCCCCCCHHHHH
T ss_pred EEEECHHHHHHHhccCCC-CCc-------eeec-------H------HHHHHhhhhcc-cc------CCCCCCCCHHHHH
Confidence 999999887766543211 000 0000 0 00000000000 00 0024556666667
Q ss_pred HhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCC
Q 006746 426 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 505 (632)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~ 505 (632)
++. .+++.+.+.|++.+.++.+.+.+++.+.|.++ | ++++.+.....
T Consensus 272 a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~~~~ 318 (393)
T 3kgw_A 272 CLR------------------------ESLALIAEQGLENCWRRHREATAHLHKHLQEM------G---LKFFVKDPEIR 318 (393)
T ss_dssp HHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CCBSSSSGGGB
T ss_pred HHH------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CeeccCChhhc
Confidence 665 78888888899999999999999999999987 3 34444432222
Q ss_pred CCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCc
Q 006746 506 RGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 584 (632)
Q Consensus 506 rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 584 (632)
.+.++.|.+.+ + ++...+.+ |++++||.++.|..+ ...+
T Consensus 319 ~~~~~~~~~~~--~--~~~~~~~~~l~~~~gi~v~~g~~~------------------------------------~~~~ 358 (393)
T 3kgw_A 319 LPTITTVTVPA--G--YNWRDIVSYVLDHFSIEISGGLGP------------------------------------TEER 358 (393)
T ss_dssp CSSEEEEECCT--T--BCHHHHHHHHHHHHCEECBCCCGG------------------------------------GTTT
T ss_pred CCeEEEEeCCC--C--CCHHHHHHHHHHhCCEEEeCCccc------------------------------------CCCC
Confidence 34566677653 1 45666654 555559999877311 1235
Q ss_pred EEEEcc-CCCCCHHHHHHHHHHHHHhhhh
Q 006746 585 VVTASL-GYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 585 ~VRvSl-g~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.||+|+ ++.+|.+|++++++.|+++++.
T Consensus 359 ~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 359 VLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp EEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 999998 7777999999999999998864
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=246.40 Aligned_cols=351 Identities=13% Similarity=0.042 Sum_probs=245.4
Q ss_pred CCceEeec-CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHH-HHHHcC
Q 006746 107 SNHTCLDY-FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR-IMDFLN 184 (632)
Q Consensus 107 ~~~vyLD~-ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~-ia~~l~ 184 (632)
++.+|||+ ++.++.++.+++++.+.+.... .. ..+|.+ . ++......+.+.|+. +++++|
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~--------~~-------~~~~~~-~--~~~~~~~~~~~l~~~~la~~~~ 68 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYS--------VC-------DFCTTG-R--LDEIKTPPIHDFIHNQLPKFLG 68 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------------------------CCHHHHHHTHHHHHTT
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcc--------cC-------Cccccc-c--chhhHHHHHHHHHHHHHHHHcC
Confidence 56899999 6688999999999887653210 00 001100 0 111123456789999 999999
Q ss_pred CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe--ccCCccccCHHHHHH
Q 006746 185 ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE--FSWPRLRINSEKLRK 261 (632)
Q Consensus 185 a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~--~~~~~~~i~~~~l~~ 261 (632)
++ .|+||+|+|+|+.+++.++ +++||+|++. ..|++ .. ..++..|++++.++ .+ +++.+|+++|++
T Consensus 69 ~~----~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~-~~----~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~ 137 (371)
T 2e7j_A 69 CD----VARVTNGAREAKFAVMHSL-AKKDAWVVMDENCHYS-SY----VAAERAGLNIALVPKTDY-PDYAITPENFAQ 137 (371)
T ss_dssp SS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HH----HHHHHTTCEEEEECCCCT-TTCCCCHHHHHH
T ss_pred CC----EEEEeCChHHHHHHHHHHH-hCCCCEEEEccCcchH-HH----HHHHHcCCeEEEeecccC-CCCCcCHHHHHH
Confidence 86 6999999999999999998 7899997755 56664 22 23567899999999 76 457799999999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCC
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGEN 340 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~ 340 (632)
+|++... .++++++++++.+|+||..+|++ |.++|+++|+++++|+++..+. .++++..+++|++++|+||+++.
T Consensus 138 ~l~~~~~-~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s~sK~~~~- 213 (371)
T 2e7j_A 138 TIEETKK-RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGADFIVGSGHKSMAA- 213 (371)
T ss_dssp HHHHHTT-TSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTCSEEEEEHHHHSSC-
T ss_pred HHHhhcc-cCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCC--CCCChhhcCCCEEEecCCcCCCC-
Confidence 9974311 12468999999999999999999 9999999999999999998876 35667677899999999996664
Q ss_pred CCceEEEEEeCCCccc-cCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCc
Q 006746 341 PSGFGCLFVKKSTVPI-LVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL 419 (632)
Q Consensus 341 P~G~G~L~Vr~~~~~~-L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~ 419 (632)
|.|+|+++++++.++. +.+...++... ..+ + .|++
T Consensus 214 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~---~----------------~~~~ 249 (371)
T 2e7j_A 214 SGPIGVMGMKEEWAEIVLRRSEKYKNKE-------------------------VEL---L----------------GCTA 249 (371)
T ss_dssp CSSCEEEEECTTTTTTTTCBCSSCTTSB-------------------------GGG---T----------------TCCC
T ss_pred CCCcEEEEEechhhhhhccccccCcccc-------------------------ccc---c----------------cCCc
Confidence 7799999999988776 65533221100 000 1 2223
Q ss_pred ccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH--HHHHHHHHHHHHccCCCCCCCCCcEEE
Q 006746 420 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG--RCLINWLVNALMKLQHPNTEGNALVKI 497 (632)
Q Consensus 420 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~--~~L~~~L~~~L~~l~h~~~~G~p~v~I 497 (632)
+...+.++. .+++++.. .+.+|. +.+.+++.+.|.++ | +++
T Consensus 250 ~~~~~~a~~------------------------~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~------~---~~~ 292 (371)
T 2e7j_A 250 RGATIITLM------------------------ASFPHVRE----RIKRWDEEVEKARRFAAEMEKL------G---IKQ 292 (371)
T ss_dssp CSHHHHHHH------------------------HHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT------T---CEE
T ss_pred CHHHHHHHH------------------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc------C---cEE
Confidence 333344443 67776654 667888 89999999999886 3 566
Q ss_pred ECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccc
Q 006746 498 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD 577 (632)
Q Consensus 498 ygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 577 (632)
++|.. .+++++.|.+. +...+.+.+.++||.++. . ... .. .
T Consensus 293 ~~~~~--~~~~~~~~~~~-------~~~~~~~~l~~~gi~~~~-~-------~~~-------~~-~-------------- 333 (371)
T 2e7j_A 293 LGDNP--HNHDLMFFHAE-------VLYEISKKAKGGRFFLYR-E-------LKS-------RK-I-------------- 333 (371)
T ss_dssp ESSSS--CCSSEEEEECH-------HHHHHHHHSSSGGGHHHH-H-------HHH-------TT-E--------------
T ss_pred ecCCC--ccCceEEEECC-------CHHHHHHHHHHCCEEEEe-c-------ccc-------cc-c--------------
Confidence 76632 25788888764 234455555567877642 0 000 00 0
Q ss_pred cCCCCCcEEE-EccCCC-CCHHHHHHHHHHHHHhhh
Q 006746 578 KANLGITVVT-ASLGYL-ANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 578 ~~~~~~~~VR-vSlg~~-~t~eDV~rlv~~l~~~l~ 611 (632)
.+...+.|| +|++.+ ++.+||+++++.|+++++
T Consensus 334 -~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~ 368 (371)
T 2e7j_A 334 -HGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 368 (371)
T ss_dssp -ECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred -cCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 011246899 999999 999999999999999875
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=247.07 Aligned_cols=348 Identities=13% Similarity=0.124 Sum_probs=240.1
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
.+|+++.|..++|+.+++++.+.+... . +| . .+......++....+.++++|+.+++++|++ +
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~~~~-~-~~----~----------~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~ 65 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKELLNF-N-DT----Q----------MSVMELSHRSQSYEEVHEQAQNLLRELLQIP-N 65 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSS-T-TS----S----------SCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-T
T ss_pred ceEeecCCCcCCCHHHHHHHHHHhhhh-c-cc----c----------ccccccCCCCHHHHHHHHHHHHHHHHHhCCC-C
Confidence 589999999999999999988765421 0 01 0 0000000001113467889999999999996 2
Q ss_pred CccEEEeCCH-HHHHHHHHhhCCC--CCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH-HH
Q 006746 189 DYGMVFTANR-TSAFKLLAESYPF--MSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK-MV 263 (632)
Q Consensus 189 ey~vvft~na-T~al~lv~~sl~~--~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~-~i 263 (632)
.++|+||+|+ |+|+.+++.++-. ++|+.|++. +.|.+ ...++..| +++.++++.+++.+++++|++ ++
T Consensus 66 ~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~------~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i 138 (360)
T 1w23_A 66 DYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKA------LKEAKLLG-ETHIAASTKANSYQSIPDFSEFQL 138 (360)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHH------HHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCC
T ss_pred CceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHH------HHHHHHhC-CeEEeecccccCcCCccchHhhcc
Confidence 3489999999 9999999988743 234455543 34432 22356789 999999873355678888877 66
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 343 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G 343 (632)
++ +++++++++.+|+||..+| +| ++++|+++++|+++..+. .++++..+ |++++|+||+|| |.|
T Consensus 139 ~~------~~k~v~~~~~~nptG~~~~-~i---~~~~~~~li~D~a~~~~~--~~~~~~~~--di~~~s~sK~~~--~~G 202 (360)
T 1w23_A 139 NE------NDAYLHITSNNTIYGTQYQ-NF---PEINHAPLIADMSSDILS--RPLKVNQF--GMIYAGAQKNLG--PSG 202 (360)
T ss_dssp CT------TEEEEEEESEETTTTEECS-SC---CCCCSSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTTS--CTT
T ss_pred CC------CCCEEEEeCCCCCcceecc-cc---cccCCceEEEechhhcCC--CCcCcccC--CEEEEEcccccC--CCC
Confidence 43 3699999999999999998 43 347999999999999886 46677654 999999999999 779
Q ss_pred eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccch
Q 006746 344 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 423 (632)
Q Consensus 344 ~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~ 423 (632)
+|+++++++.++.+.+.. ++.++ + ... ...+. ..|+++++.
T Consensus 203 ~G~~~~~~~~~~~~~~~~-~~~~~--------~-----------------~~~-~~~~~------------~~~~~~~~~ 243 (360)
T 1w23_A 203 VTVVIVKKDLLNTKVEQV-PTMLQ--------Y-----------------ATH-IKSDS------------LYNTPPTFS 243 (360)
T ss_dssp CEEEEEEHHHHCSCCTTC-CGGGC--------H-----------------HHH-HHTTT------------CSSCCCHHH
T ss_pred cEEEEEcHHHHhhcccCC-cchhh--------h-----------------hhh-hhccC------------CCCCCCHHH
Confidence 999999998876665432 10000 0 000 00000 124455555
Q ss_pred hhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCC
Q 006746 424 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPK 501 (632)
Q Consensus 424 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~ 501 (632)
+.++. .+|+.+.+. |++.+.++.+.+.+++.+.|.++ +.+ .++.+.
T Consensus 244 ~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~~ 291 (360)
T 1w23_A 244 IYMLR------------------------NVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES--------NGFYVGHAEK 291 (360)
T ss_dssp HHHHH------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT--------TTSSEESSCG
T ss_pred HHHHH------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--------cCcccccCCc
Confidence 66665 788888776 68999999999999999999987 322 333211
Q ss_pred CCCCCCc-EEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCC
Q 006746 502 IRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580 (632)
Q Consensus 502 ~~~~rg~-ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 580 (632)
..+++ ++.|.+.+. .+...+.+.+.++||.++.|..
T Consensus 292 --~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~------------------------------------- 328 (360)
T 1w23_A 292 --GSRSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNGHR------------------------------------- 328 (360)
T ss_dssp --GGBCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBCCT-------------------------------------
T ss_pred --hhccCcEEEEEcCCC----ccHHHHHHHHHHCCeeeecCCC-------------------------------------
Confidence 12445 888887541 2334444445668988765420
Q ss_pred CCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 581 LGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 581 ~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|++.+++.+||+++++.|++++.
T Consensus 329 -~~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 329 -SVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp -TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -CCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 135899999999999999999999998864
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=248.02 Aligned_cols=372 Identities=10% Similarity=-0.013 Sum_probs=233.1
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccc-cccccchhHHHHHHHHHHHHHcCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~-~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
...||||..+++.|..++..+.... .|+... +..+....++++++++.+++++|++
T Consensus 108 ~p~~~~~~~~~~~~~~~~~~~l~~~-----------------------~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~ 164 (515)
T 2jis_A 108 HPRFFNQLFSGLDPHALAGRIITES-----------------------LNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS 164 (515)
T ss_dssp STTEESSSCCCCCHHHHHHHHHHHH-----------------------HCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeeCCCCHHHHHHHHHHHH-----------------------hccCCCchhhchHHHHHHHHHHHHHHHHhCCC
Confidence 4579999999999998887543210 111110 0011123577889999999999998
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCC------CC-CCC------eEEEe-ccccchhhHHHHHHHHhcCC---EEEEEeccC
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYP------FM-SVK------NLLTV-YDYESEAVEAMIRTSEKRGA---RVMSAEFSW 249 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~------~~-~gd------~ilt~-~d~~s~~v~~~~~~a~~~G~---~v~~v~~~~ 249 (632)
++ .++||+|+|+|+.+++.... ++ +|+ +|+++ ..|++ + ...++..|. +++.+|.+
T Consensus 165 ~~--~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s--~---~~~~~~~g~g~~~v~~v~~~- 236 (515)
T 2jis_A 165 SG--DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS--I---QKGAAFLGLGTDSVRVVKAD- 236 (515)
T ss_dssp SC--EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH--H---HHHHHHTTSCGGGEEEECBC-
T ss_pred CC--CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH--H---HHHHHHcCCCCCcEEEEecC-
Confidence 44 79999999999877766642 12 464 56654 45664 2 233445566 89999987
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC-----CCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG-----LSL 323 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld-----ls~ 323 (632)
+++.+++++|+++|++......++++|++++.+|.||...|++ |.++|+++|++++||+++.++. ...+ +..
T Consensus 237 ~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~--~~~~~~~~~~~g 314 (515)
T 2jis_A 237 ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSV--LLSQTHRHLLDG 314 (515)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGG--GGCTTTGGGGTT
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHH--HhChhhHhhcCC
Confidence 5788999999999986321122478999999999999999999 9999999999999999988765 2332 444
Q ss_pred C-CCcEEEEccccccCCCCCceEEEEEeCC--Ccccc---CCCCC-CCceeecccccccccccccCCCCCCccccchhhh
Q 006746 324 V-RPDFLICSFYQIFGENPSGFGCLFVKKS--TVPIL---VDNTS-SGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 324 ~-~~Df~~~S~hK~~G~~P~G~G~L~Vr~~--~~~~L---~~~~~-gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
+ ++|++++++||++|. |.|+|++++|++ .+..+ .+.+. ++.... ...|
T Consensus 315 ~~~aD~v~~s~hK~l~~-p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~----~~~~-------------------- 369 (515)
T 2jis_A 315 IQRADSVAWNPHKLLAA-GLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFY----DVAL-------------------- 369 (515)
T ss_dssp GGGCSEEEECTTSTTCC-CSCCEEEEESCCSCHHHHHHCC---------CCS----CGGG--------------------
T ss_pred CccCCEEEECcccccCC-CCCeeEEEEeChHHHHHHHhcCCchhccCCcccc----cccC--------------------
Confidence 4 889999999998876 889999999987 43321 12221 211000 0000
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
+.++.++... ++.+ ..++- .++..+...|++.+.+|...++++
T Consensus 370 --~~~~~~~~~~-----rr~~------al~~~------------------------~~l~~lg~~g~~~~~~~~~~~a~~ 412 (515)
T 2jis_A 370 --DTGDKVVQCG-----RRVD------CLKLW------------------------LMWKAQGDQGLERRIDQAFVLARY 412 (515)
T ss_dssp --CCGGGCSCSS-----CCCC------HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCCCCC-----Cccc------HHHHH------------------------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 0111111100 0000 01111 345555556889999999999999
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccC--CCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDW--KREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~--~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
+.+.|.++ |.++++++. +.++|+|.+.+. +|. .+...+.+.+++. +..
T Consensus 413 l~~~L~~~--------~g~~~~~~~----~~~~v~f~~~p~~~~~~-~~~~~~~~~l~~~----------~~~------- 462 (515)
T 2jis_A 413 LVEEMKKR--------EGFELVMEP----EFVNVCFWFVPPSLRGK-QESPDYHERLSKV----------APV------- 462 (515)
T ss_dssp HHHHHHTS--------TTEEESSCC----SSSEEEEEECCGGGTTC-TTSTTHHHHHHTH----------HHH-------
T ss_pred HHHHHhcC--------CCEEEeCCC----CeeEEEEEEeCcccccc-ccchhHHHHHHHH----------HHH-------
Confidence 99999987 679998863 357788977431 110 0111111111100 000
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHHhhh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.+.+.+..|...... ....++||+|+ ++++|.+||+++++.|+++++
T Consensus 463 l~~~l~~~G~~~~~~~~~-------~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 463 LKERMVKEGSMMIGYQPH-------GTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp HHHHHHHHTSCEEEEEEE-------TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEEEEE-------CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 001111112111100000 01236899999 899999999999999998764
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=250.07 Aligned_cols=319 Identities=14% Similarity=0.073 Sum_probs=216.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.++++++|+.+++++|++++ ++++|.|+|.+++.+..++.+++||+|+++ ..|++ ....+...++..|++++.++.
T Consensus 107 ~~~~~~~~~~la~~~g~~~~--~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s-~~~~~~~~a~~~G~~v~~v~~ 183 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIA--NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPL 183 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEE--CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCcc--ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHh-HHHHHHHHHHHCCCEEEEEcC
Confidence 47889999999999999865 588999999544444444345789997755 56665 444445667789999999987
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecc-ccCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDAC-ALGPKDMDSFGLSLVR 325 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaa-q~~g~~m~~ldls~~~ 325 (632)
+ ++.+++++ |++ +++++++++. |.||...|++ |+++||++|+++++|+. ++.|. ...+ ..++
T Consensus 184 ~--~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~--~~~~-~~~g 247 (438)
T 1wyu_A 184 E--GGRTPLPE----VGE------EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV--LKPP-GAYG 247 (438)
T ss_dssp B--TTBCCCCC----CCT------TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT--BCCH-HHHT
T ss_pred c--CCccCHHH----hCC------CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccC--cCCC-ccCC
Confidence 3 45666555 333 3699999998 9999999999 99999999999998765 54443 1222 4578
Q ss_pred CcEEEEcccc-----ccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 326 PDFLICSFYQ-----IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 326 ~Df~~~S~hK-----~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
+|++++|+|| ++|. | |+|+++++++.++.+.+...|+.++.. ....|.. .+.+.+ ...+++.
T Consensus 248 ~D~~~~s~kk~~~~~~~~G-p-~~G~l~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~------~l~~~~---~~~r~~~ 314 (438)
T 1wyu_A 248 ADIAVGDGQSLGLPMGFGG-P-HFGFLATKKAFVRQLPGRLVSETVDVE--GRRGFIL------TLQARE---QYIRRAK 314 (438)
T ss_dssp CSEEEEECTTTTCCCGGGC-S-CCEEEEECGGGGGGCCSCCEEEEEBTT--SCEEEEE------CCGGGS---HHHHGGG
T ss_pred CCEEEECCcccCCCccCCC-C-CeeEEEEcHHHHHhCCCceeccccccC--CCcceee------eccccc---cccchhc
Confidence 9999999887 4443 7 999999999887777544433222110 0000100 000000 0001233
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhH--HHHHHhhCHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRG--LDQVDSLGLTMISRRGRCLINWLV 478 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a--Ld~~~~~Gl~~I~~r~~~L~~~L~ 478 (632)
+|.++... ..+.++. ++ +..+...|++.+.+|.+.+++++.
T Consensus 315 ~t~~~~~~-------------~~~~a~~------------------------aa~~l~~~~~~g~~~~~~~~~~~~~~l~ 357 (438)
T 1wyu_A 315 AKSNITTN-------------AQLTALM------------------------GAMYLAALGPEGLREVALKSVEMAHKLH 357 (438)
T ss_dssp SSCCCCSC-------------CHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccch-------------HHHHHHH------------------------HHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 44333111 2233332 34 666666789999999999999999
Q ss_pred HHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEE--ccCccCChHHHhHHHHhh
Q 006746 479 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL--SYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 479 ~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~l--r~G~~c~~~~~~~~~~~~ 556 (632)
+.|.++ |.++++++. ..-.++.|.+. .+...+.+.+.++||.+ +.|.+|
T Consensus 358 ~~L~~~--------~g~~~~~~~---~~~~~~~~~~~------~~~~~~~~~L~~~gi~v~~~~~~~~------------ 408 (438)
T 1wyu_A 358 ALLLEV--------PGVRPFTPK---PFFNEFALALP------KDPEAVRRALAERGFHGATPVPREY------------ 408 (438)
T ss_dssp HHHTTS--------TTCEECSCS---SBCSEEEEECS------SCHHHHHHHHHHTTCCCCEECCTTS------------
T ss_pred HHHhcC--------CCeEECCCC---CeEEEEEEeCC------CCHHHHHHHHHHCCceecccccccc------------
Confidence 999987 568888763 23345555432 35666666555679988 334211
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+.+.||+|++.++|.+||+++++.|++++
T Consensus 409 -------------------------~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 409 -------------------------GENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -------------------------CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -------------------------CCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 24699999999999999999999998875
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=238.67 Aligned_cols=351 Identities=12% Similarity=0.079 Sum_probs=240.0
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
...+|+++.|..++|+.+++++.++.... . ... + ++....+.++++|+.+++++|++
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-------------~------~~~--~--~~~~~~~~~~~~~~~la~~~g~~ 94 (398)
T 2fyf_A 38 KPRDGRFGSGPSKVRLEQLQTLTTTAAAL-------------F------GTS--H--RQAPVKNLVGRVRSGLAELFSLP 94 (398)
T ss_dssp SCSSCBCCSSSCCCCHHHHHGGGTTTTTT-------------T------TSC--T--TSHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCccccCCCCCCCHHHHHHHhhcCCCc-------------c------CcC--c--CCHHHHHHHHHHHHHHHHHhCCC
Confidence 34678999999999999999976531100 0 000 0 11112467889999999999997
Q ss_pred CCCccEEE-eCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhc--CCEEEEEeccCCccccCHHHHHHHH
Q 006746 187 ENDYGMVF-TANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKR--GARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 187 ~~ey~vvf-t~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~--G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
+ +++|+| |+|+|+|+++++.++ +++| .+++...+++. .+ ...+... |++++.++++ . +.+...+ +
T Consensus 95 ~-~~~i~~~t~g~t~al~~~~~~l-~~~g-v~~v~~~~~~~--~~-~~~~~~~~~g~~~~~v~~~-~-g~~~~~~----i 162 (398)
T 2fyf_A 95 D-GYEVILGNGGATAFWDAAAFGL-IDKR-SLHLTYGEFSA--KF-ASAVSKNPFVGEPIIITSD-P-GSAPEPQ----T 162 (398)
T ss_dssp T-TCEEEEEETCHHHHHHHHHHHT-CSSC-EEEEECSHHHH--HH-HHHHHHCTTSCCCEEEECC-T-TCCCCCC----C
T ss_pred C-CceEEEeCCchhHHHHHHHHHh-cCCC-eEEEeCCHHHH--HH-HHHHHHhCCCCceEEEecC-C-CCCCCcc----c
Confidence 3 347898 999999999999998 6666 22223333321 11 2234555 8899999886 2 2222111 2
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
+ .++++|++++.+|+||..+|++ |.++ +|+++++|+++..+. .++++. ++|++++|+||++|. |.
T Consensus 163 ~------~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~--~~~~~~--~~di~~~s~sK~~~~-~g 228 (398)
T 2fyf_A 163 D------PSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGG--LPVDIA--ETDAYYFAPQKNFAS-DG 228 (398)
T ss_dssp C------TTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTT--SCCCGG--GCSEEEECTTSTTCS-CS
T ss_pred c------CCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCC--cccCcc--cCcEEEEecCcccCC-CC
Confidence 2 2468999999999999999999 8776 899999999999886 466664 489999999999995 55
Q ss_pred ceEEEEEeCCCccccCCCC-CCCceeecccccccccccccCCCCCCccccchhhhh-hhccccCCCccchhhhhhcCCcc
Q 006746 343 GFGCLFVKKSTVPILVDNT-SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE-KVAATNTFSGPMSIEMRQSGKLE 420 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~-~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e-~e~gt~~f~~~~~~~~~~~Gt~~ 420 (632)
|+|+++++++.++.++... .+..+ ..+|... .... ...+. ..++++
T Consensus 229 g~g~l~~~~~~~~~l~~~~~~~~~~------~~~~~~~--------------~~~~~~~~~~------------~~~t~~ 276 (398)
T 2fyf_A 229 GLWLAIMSPAALSRIEAIAATGRWV------PDFLSLP--------------IAVENSLKNQ------------TYNTPA 276 (398)
T ss_dssp SEEEEEECHHHHHHHHHHHHTTCCC------CGGGCHH--------------HHHHHHTTTC------------CSSCCC
T ss_pred ceEEEEECHHHHHHhhcccccCCCC------CcEEehH--------------HHhhhcccCC------------CCCCCC
Confidence 7999999998776553210 00000 0011000 0000 00010 134556
Q ss_pred cchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEEC
Q 006746 421 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYG 499 (632)
Q Consensus 421 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G-l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iyg 499 (632)
++.+.++. .+|+.+.+.| ++.+.++.+.+.+++.+.|.++ |.++++.
T Consensus 277 ~~~~~a~~------------------------~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--------~g~~~~~ 324 (398)
T 2fyf_A 277 IATLALLA------------------------EQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER--------PYTTPFV 324 (398)
T ss_dssp HHHHHHHH------------------------HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS--------TTEEESC
T ss_pred HHHHHHHH------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc--------CCceecc
Confidence 66666665 8898888777 9999999999999999999987 5688875
Q ss_pred CCCCCCCCc-EEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccccc
Q 006746 500 PKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 578 (632)
Q Consensus 500 p~~~~~rg~-ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 578 (632)
+. +..+++ ++.|.+.+ | ++...+.+.+.++||.++.|.
T Consensus 325 ~~-~~~~~~~~~~~~~~~--~--~~~~~l~~~L~~~gI~v~~g~------------------------------------ 363 (398)
T 2fyf_A 325 TD-PGLRSQVVGTIDFVD--D--VDAGTVAKILRANGIVDTEPY------------------------------------ 363 (398)
T ss_dssp CS-GGGBCSSEEEEEECT--T--SCHHHHHHHHHHTTCBCCSCC------------------------------------
T ss_pred CC-hhhcCCcEEEEECCC--C--CCHHHHHHHHHHCCcEEecCc------------------------------------
Confidence 31 112566 88998853 2 566677666666699998651
Q ss_pred CCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 579 ANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 579 ~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+.+.||+|++.++|.|||+++++.|+++++
T Consensus 364 ~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 364 RKLGRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp TTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 011236899999999999999999999998864
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-24 Score=227.47 Aligned_cols=334 Identities=13% Similarity=-0.032 Sum_probs=237.6
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
..||.++...+. +.+++++.+.+... + .++.. |. ...+..+++++.+++++|++++
T Consensus 32 ~~~~~~~~~~~~-~~v~~a~~~~~~~~--------~-----------~~~~~---~~-~~~~~~~~l~~~la~~~~~~~~ 87 (397)
T 3f9t_A 32 GNIFGSMCSNVL-PITRKIVDIFLETN--------L-----------GDPGL---FK-GTKLLEEKAVALLGSLLNNKDA 87 (397)
T ss_dssp TCBCSCSCCCCC-THHHHHHHHHTTCC--------T-----------TSGGG---BH-HHHHHHHHHHHHHHHHTTCTTC
T ss_pred CCeEEEecCCCc-HHHHHHHHHHHhhc--------C-----------CCccc---Ch-hHHHHHHHHHHHHHHHhCCCCC
Confidence 368988866554 46778776644321 0 12211 11 1357788999999999999865
Q ss_pred CccEEEeCCHHHHHHHHHhhCCCC------------CCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccC
Q 006746 189 DYGMVFTANRTSAFKLLAESYPFM------------SVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRIN 255 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~~~------------~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~ 255 (632)
.|+||+|+|+|+.+++.++... +||+|++.. .|++ ....++..|++++.++.+ +++.+|
T Consensus 88 --~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~-----~~~~~~~~g~~~~~v~~~-~~~~~d 159 (397)
T 3f9t_A 88 --YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFS-----FEKGREMMDLEYIYAPIK-EDYTID 159 (397)
T ss_dssp --EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTH-----HHHHHHHHTCEEEEECBC-TTSSBC
T ss_pred --CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhH-----HHHHHHHcCceeEEEeeC-CCCcCC
Confidence 7999999999999999887322 488877654 5554 234456679999999998 567899
Q ss_pred HHHHHHHHHh-cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC---C---------CCCCCC
Q 006746 256 SEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK---D---------MDSFGL 321 (632)
Q Consensus 256 ~~~l~~~i~~-~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~---~---------m~~ldl 321 (632)
+++|+++|++ ++ +++++.+.+|+||...|++ |.++|+++|+++++|.++..+. . ..++++
T Consensus 160 ~~~l~~~i~~~~~------~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
T 3f9t_A 160 EKFVKDAVEDYDV------DGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDF 233 (397)
T ss_dssp HHHHHHHHHHSCC------CEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSG
T ss_pred HHHHHHHHhhcCC------eEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccc
Confidence 9999999987 44 8999999999999999999 9999999999999999987431 0 015566
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEeCCCc-cccC---CCCCCCceeecccccccccccccCCCCCCccccchhhhh
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV-PILV---DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 397 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~-~~L~---~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 397 (632)
.. ++|++++|+||+++. |.++|+++++++.+ +.+. +.+.++.. . .
T Consensus 234 ~~-~~~~~~~s~~K~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~------------------~--- 282 (397)
T 3f9t_A 234 SL-GVDSITIDPHKMGHC-PIPSGGILFKDIGYKRYLDVDAPYLTETRQ--------A------------------T--- 282 (397)
T ss_dssp GG-TCSEEECCTTTTTCC-CSSCEEEEESSGGGGGGTCEECTTSSSSEE--------C------------------S---
T ss_pred cc-cCCeEEEccccccCC-CCCceEEEEeCHHHHHhhccCCccccCCCc--------c------------------c---
Confidence 66 899999999997754 77999999987653 2221 11111000 0 0
Q ss_pred hhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHH
Q 006746 398 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477 (632)
Q Consensus 398 ~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L 477 (632)
..++. ....+.++. .+++.+...+++.+.++.+.+.+++
T Consensus 283 -~~~~~----------------~~~~~~~~~------------------------a~~~~~~~~~~~~~~~~~~~~~~~l 321 (397)
T 3f9t_A 283 -ILGTR----------------VGFGGACTY------------------------AVLRYLGREGQRKIVNECMENTLYL 321 (397)
T ss_dssp -SCSSC----------------CSHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccc----------------ccchHHHHH------------------------HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 01111 111122222 5677676778899999999999999
Q ss_pred HHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 478 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 478 ~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
.+.|.++ |.+ ++.+ ..++++.|.+.+ ...+.+.+.++||.++.|.
T Consensus 322 ~~~L~~~------g~~---~~~~----~~~~~~~~~~~~-------~~~~~~~l~~~gi~v~~~~--------------- 366 (397)
T 3f9t_A 322 YKKLKEN------NFK---PVIE----PILNIVAIEDED-------YKEVCKKLRDRGIYVSVCN--------------- 366 (397)
T ss_dssp HHHHHHT------TCC---BSSC----CSSSEEEEECTT-------HHHHHHHHHHTTCBCEECS---------------
T ss_pred HHHHHHC------CCE---EEcC----CCccEEEEEeCC-------HHHHHHHHHhCCeEEeccC---------------
Confidence 9999987 322 2333 357788776643 3455555556699887541
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|++.++|.|||+++++.|+++++
T Consensus 367 ------------------------~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 367 ------------------------CVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp ------------------------SSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred ------------------------CCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 136999999999999999999999998864
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=237.37 Aligned_cols=324 Identities=11% Similarity=0.008 Sum_probs=228.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCCC---ccEEEeCCHHHHHHHHHhhCCC-------CCC-----CeEEEeccccchhhHHHH
Q 006746 168 ESGLESAMKKRIMDFLNISEND---YGMVFTANRTSAFKLLAESYPF-------MSV-----KNLLTVYDYESEAVEAMI 232 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~e---y~vvft~naT~al~lv~~sl~~-------~~g-----d~ilt~~d~~s~~v~~~~ 232 (632)
..++.+++++.+++++|+++++ ..++||+|+|+|+.+++.++.. ++| ++|+++. .|. .+.
T Consensus 79 ~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~----~~~ 153 (452)
T 2dgk_A 79 SAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQI----CWH 153 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCH----HHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcH----HHH
Confidence 3577889999999999998652 2489999999999998766521 134 4777655 443 224
Q ss_pred HHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC------CcEEE
Q 006746 233 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN------DWHIL 305 (632)
Q Consensus 233 ~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~------g~~vl 305 (632)
..++..|++++.++.++.++.+|+++|+++|+++ +++|++++.+|.||...|++ |.++|+++ |++++
T Consensus 154 ~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~ 227 (452)
T 2dgk_A 154 KFARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMH 227 (452)
T ss_dssp HHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHcCceEEEEecCCCCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEE
Confidence 4567789999999987437889999999999764 48999999999999999999 99999995 99999
Q ss_pred EeccccCCCC-----CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCC-c-ccc--CCCCCCCceeecccccccc
Q 006746 306 IDACALGPKD-----MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST-V-PIL--VDNTSSGMVSLLPAKKQLW 376 (632)
Q Consensus 306 vDaaq~~g~~-----m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~-~-~~L--~~~~~gG~v~~~~~~~~~~ 376 (632)
||+|+..+.. -.++++...++|++++++||+++. |.|+|+++++++. + ..+ .+.+.+|... .|
T Consensus 228 vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 299 (452)
T 2dgk_A 228 IDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGCGWVIWRDEEALPQELVFNVDYLGGQIG-------TF 299 (452)
T ss_dssp EECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEECCTTCCEE-------EC
T ss_pred EEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCC-CCCeEEEEEcCHHHHHHHhccCccccCCCCC-------Cc
Confidence 9999876420 013555556899999999996644 8899999998753 2 222 1222221100 00
Q ss_pred cccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH
Q 006746 377 LTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD 456 (632)
Q Consensus 377 ~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd 456 (632)
. ..++.++ ..+.++. .+|.
T Consensus 300 --------~-------------~~~~r~~----------------~~~~~~~------------------------aal~ 318 (452)
T 2dgk_A 300 --------A-------------INFSRPA----------------GQVIAQY------------------------YEFL 318 (452)
T ss_dssp --------C-------------SCCSCBC----------------HHHHHHH------------------------HHHH
T ss_pred --------c-------------cCCCChh----------------HHHHHHH------------------------HHHH
Confidence 0 0111111 1112222 5566
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCc
Q 006746 457 QVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENI 536 (632)
Q Consensus 457 ~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI 536 (632)
.+...|+..+.++...++++|.+.|.++ +.++++.|..+..+.++|+|.+.+..+..++...+.+.+.+.||
T Consensus 319 ~lg~~g~~~~~~~~~~~a~~l~~~L~~~--------~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi 390 (452)
T 2dgk_A 319 RLGREGYTKVQNASYQVAAYLADEIAKL--------GPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGW 390 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--------SSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCC
Confidence 6656688999999999999999999987 56888866322246789999987532222454566666666799
Q ss_pred EEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 537 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 537 ~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.++.. +.+. ...+.+++|+|++.++|.|||++|++.|++.+..
T Consensus 391 ~v~~~--~~~~-------------------------------~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 391 QVPAF--TLGG-------------------------------EATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 433 (452)
T ss_dssp BCCEE--ECST-------------------------------TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeeee--eCCc-------------------------------ccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 87641 1110 0012459999999999999999999999988754
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=240.90 Aligned_cols=385 Identities=12% Similarity=0.025 Sum_probs=243.6
Q ss_pred CCCCCc--hhHHHHHHhhccCcC-CCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccc
Q 006746 85 PQYFDT--YQIDQIRAKEYYQLS-LSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ 161 (632)
Q Consensus 85 p~y~~~--~~~d~iR~~ef~~L~-~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~ 161 (632)
|+-+.. .-++.+++.-.+..- .....||||.++++.+..+++++..+.. |.+ .
T Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~-----------------------n~~-~ 129 (497)
T 2qma_A 74 DNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAAL-----------------------NQS-M 129 (497)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHH-----------------------CCC-T
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhh-----------------------ccc-c
Confidence 554432 345667664344331 1456899999999999999998654221 110 0
Q ss_pred ccccc--chhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC---------C---CC------CC-eEEEe
Q 006746 162 LLHGG--QESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP---------F---MS------VK-NLLTV 220 (632)
Q Consensus 162 ~~~g~--~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~---------~---~~------gd-~ilt~ 220 (632)
..|+. ....+++++++.+++++|+++. ..++||+|+|+|+.+++.+.. + .+ |+ +|+++
T Consensus 130 ~~~~~~~~~~~le~~~~~~la~~~g~~~~-~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s 208 (497)
T 2qma_A 130 DSWDQASSATYVEQKVVNWLCDKYDLSEK-ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCS 208 (497)
T ss_dssp TCGGGCHHHHHHHHHHHHHHHHHTTCCTT-CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEE
T ss_pred cchhhChHHHHHHHHHHHHHHHHhCCCCC-CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEEC
Confidence 11111 2356777889999999999752 379999999999998777631 1 12 45 56655
Q ss_pred -ccccchhhHHHHHHHHhcCC---EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHH
Q 006746 221 -YDYESEAVEAMIRTSEKRGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMR 295 (632)
Q Consensus 221 -~d~~s~~v~~~~~~a~~~G~---~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~ 295 (632)
..|++ + ...++..|. +++.+|.+ +++.+|+++|+++|+++......+.+|++++.+|.||...|++ |.+
T Consensus 209 ~~~h~s--~---~~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~ 282 (497)
T 2qma_A 209 KKSHFT--V---QKSASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIAD 282 (497)
T ss_dssp TTSCTH--H---HHHHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred CCchHH--H---HHHHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHH
Confidence 46664 2 223344444 79999987 6788999999999986421111234889999999999999999 999
Q ss_pred HHhhCCcEEEEeccccCCCCCCCCC----CCCC-CCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecc
Q 006746 296 IAQENDWHILIDACALGPKDMDSFG----LSLV-RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLP 370 (632)
Q Consensus 296 ~a~~~g~~vlvDaaq~~g~~m~~ld----ls~~-~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~ 370 (632)
+|+++|++++||+++.++. .+.+ +..+ ++|++++|+||+++. |.|+|+++++++.. +++....+
T Consensus 283 l~~~~~~~l~vD~a~~~~~--~~~~~~~~~~gi~~~D~i~~s~hK~l~~-p~~~G~l~~~~~~~--~~~~~~~~------ 351 (497)
T 2qma_A 283 MAVKHDMWMHVDGAYGGAL--ILSSHKSRLKGVERAHSISVDFHKLFYQ-TISCGALLVNDKSN--FKFLLHHA------ 351 (497)
T ss_dssp HHHHHTCEEEEEETTGGGG--GGSTTGGGGTTGGGCSEEEEETTTTTCC-CSSCEEEEESCGGG--GGGGCC--------
T ss_pred HHHHcCCEEEEehhhhHHH--HhCcchHhhcCcccCCEEEEcchhccCC-CcceEEEEEeCHHH--HHHhcCCc------
Confidence 9999999999999988765 2333 3334 789999999997776 88999999997652 22111110
Q ss_pred cccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchh
Q 006746 371 AKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEI 450 (632)
Q Consensus 371 ~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 450 (632)
.|..... ..++++.+ +++ .++..... .++-
T Consensus 352 ---~yl~~~~-------------------~~~~~~~~-~~~----~~~r~~~a-l~~~---------------------- 381 (497)
T 2qma_A 352 ---DYLNREH-------------------DELPNLVD-KSI----ATTKRFDA-LKVF---------------------- 381 (497)
T ss_dssp ---------------------------------------------CCSCCCTH-HHHH----------------------
T ss_pred ---hhcCCcc-------------------ccCCCccc-cCC----CCCCchhH-HHHH----------------------
Confidence 0000000 00000000 000 00000000 1111
Q ss_pred hhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccC--HHHHH
Q 006746 451 ECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE--PVLVQ 528 (632)
Q Consensus 451 ~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~--~~~V~ 528 (632)
.+++.+...|+..+.+|...+++++.+.|.++ |.++++++. ++++|+|.+.+... ..+ ...+.
T Consensus 382 --~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~--------~~~~~~~~~----~~~~v~f~~~~~~~-~~~~l~~~l~ 446 (497)
T 2qma_A 382 --MTMQNVGPKALGDMYDHLLAQTLEVADMIRTN--------DQFELLAEP----SLSTVLFRATHETA-DLDELNKALR 446 (497)
T ss_dssp --HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC--------TTEEECSCC----SSSEEEEEECCSSS-CHHHHHHHHH
T ss_pred --HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC--------CCeEEEcCC----CceEEEEEEcCCcc-CHHHHHHHHH
Confidence 35555544567888999999999999999987 668888753 57899999865311 000 11222
Q ss_pred HHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHH
Q 006746 529 KLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVA 607 (632)
Q Consensus 529 kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~ 607 (632)
+.+.+.|+.+..+. ...+.++||+|+ ++++|.+||+++++.|+
T Consensus 447 ~~l~~~G~~~~~~~------------------------------------~~~g~~~lRis~~~~~~t~edi~~~~~~l~ 490 (497)
T 2qma_A 447 LEALTRGIAVLGET------------------------------------IVDGKTALKFTILNPCLTTSDFESLLSKIN 490 (497)
T ss_dssp HHHHHHTSCBCEEE------------------------------------EETTEEEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEEee------------------------------------EECCEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 22333344432110 001236899998 99999999999999999
Q ss_pred Hhhhh
Q 006746 608 QFLDA 612 (632)
Q Consensus 608 ~~l~~ 612 (632)
++++.
T Consensus 491 ~~~~~ 495 (497)
T 2qma_A 491 MLAVE 495 (497)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88653
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=233.73 Aligned_cols=352 Identities=15% Similarity=0.016 Sum_probs=246.2
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC--
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS-- 186 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~-- 186 (632)
..+|....++.++..+.+++...+.... .++. .+. ...++.+++++.+++++|++
T Consensus 57 ~~~l~s~~t~~~~~~v~~~l~~~~~~~~-------------------~~~~---~~p-~~~~le~~~~~~la~l~g~~~~ 113 (502)
T 3hbx_A 57 RLNLASFVTTWMEPECDKLIMSSINKNY-------------------VDMD---EYP-VTTELQNRCVNMIAHLFNAPLE 113 (502)
T ss_dssp GGBTTCCSCCCCCHHHHHHHHHTTTCBT-------------------TCTT---TCH-HHHHHHHHHHHHHHHHTTCCCC
T ss_pred CceeccccCCCCCHHHHHHHHHHhccCC-------------------CChh---cCh-hHHHHHHHHHHHHHHHhCCCcc
Confidence 3344444456778888888776543210 1111 011 13578889999999999998
Q ss_pred CCCc-cEEEeCCHHHHHHHHHhhCCCC-------CCC-----eEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCcc
Q 006746 187 ENDY-GMVFTANRTSAFKLLAESYPFM-------SVK-----NLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRL 252 (632)
Q Consensus 187 ~~ey-~vvft~naT~al~lv~~sl~~~-------~gd-----~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~ 252 (632)
+++. .-+||+|+|+|+.+++.++... +|+ +|+++. .|.+ +...++..|++++.+++++.++
T Consensus 114 ~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s-----~~~~~~~~G~~~~~v~~~~~~~ 188 (502)
T 3hbx_A 114 EAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVC-----WEKFARYFEVELKEVKLSEGYY 188 (502)
T ss_dssp SSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHH-----HHHHHHHTTCEEEEECCBTTBC
T ss_pred cccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHH-----HHHHHHHcCceeEEEecCCCcC
Confidence 4322 2347999999999887765221 255 776654 4443 2456677899999999985558
Q ss_pred ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC------CcEEEEeccccC-------CCCCCC
Q 006746 253 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN------DWHILIDACALG-------PKDMDS 318 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~------g~~vlvDaaq~~-------g~~m~~ 318 (632)
.+|+++|+++|+++ +++|++++.+|.||...|++ |.++|+++ |++++||+|+.. +. .+
T Consensus 189 ~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~--~~ 260 (502)
T 3hbx_A 189 VMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPE--LE 260 (502)
T ss_dssp SCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT--CC
T ss_pred cCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcc--cc
Confidence 89999999999764 48999999999999999999 99999998 999999999873 32 35
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCC-ccc-c--CCCCCCCceeecccccccccccccCCCCCCccccchh
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST-VPI-L--VDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 394 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~-~~~-L--~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 394 (632)
.++...++|++++++||+++. |.|+|++++++.. +.. + .+.+.++...
T Consensus 261 ~~~~~~~~D~v~~s~hK~l~~-p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~--------------------------- 312 (502)
T 3hbx_A 261 WDFRLPLVKSINVSGHKYGLV-YAGIGWVIWRNKEDLPEELIFHINYLGADQP--------------------------- 312 (502)
T ss_dssp CSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEECSSSSCEE---------------------------
T ss_pred cccCCCCceEEEECcccccCC-CCCeEEEEEeCHHHhhHHhccCcccccCCCC---------------------------
Confidence 666667899999999997754 8899999998653 211 1 1122221100
Q ss_pred hhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHH
Q 006746 395 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 474 (632)
Q Consensus 395 ~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~ 474 (632)
.-+.. ++.....+.++. .+|..+...|+..+.+|...++
T Consensus 313 -----~~~~~------------~sr~~~~~~a~~------------------------~al~~lg~~g~~~~~~~~~~~a 351 (502)
T 3hbx_A 313 -----TFTLN------------FSKGSSQVIAQY------------------------YQLIRLGHEGYRNVMENCRENM 351 (502)
T ss_dssp -----ECCSC------------CSCBSHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----Ccccc------------CCchHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 111111223332 5677666678899999999999
Q ss_pred HHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 475 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 475 ~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
++|.+.|.++ +.++++.+. ...++|+|.+.+.. .++...+.+.+.++||.++... .+.
T Consensus 352 ~~l~~~L~~~--------~~~~~~~~~---~~~~~v~f~~~~~~--~~~~~~l~~~L~~~Gi~v~~~~--~p~------- 409 (502)
T 3hbx_A 352 IVLREGLEKT--------ERFNIVSKD---EGVPLVAFSLKDSS--CHTEFEISDMLRRYGWIVPAYT--MPP------- 409 (502)
T ss_dssp HHHHHHHHTT--------TCEEECSCS---SSSSEEEEEESSCS--SCCHHHHHHHHHTTTCBCCEEE--CCT-------
T ss_pred HHHHHHHHhC--------CCEEEEeCC---CCceEEEEEecCCC--cCCHHHHHHHHHhCCcEEeecc--CCc-------
Confidence 9999999987 568888762 36789999997632 2566667777777899875321 000
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+...+|++++..+|.|||++|++.|++.++
T Consensus 410 ------------------------~~~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 410 ------------------------NAQHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp ------------------------TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------ccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 012346899999999999999999999998775
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-24 Score=229.95 Aligned_cols=327 Identities=10% Similarity=0.033 Sum_probs=214.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
....++++|+++++++|++ .++||+|+|+|+++++.++ +++||+|++ ...|++ ....+...++..|++++.++
T Consensus 54 ~~~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~al~~l-~~~gd~vi~~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 127 (412)
T 2cb1_A 54 KDPTAKALEERLKALEGAL----EAVVLASGQAATFAALLAL-LRPGDEVVAAKGLFGQ-TIGLFGQVLSLMGVTVRYVD 127 (412)
T ss_dssp CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTCCHH-HHHHHHHTTTTTTCEEEEEC
T ss_pred CChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchh-HHHHHHHHHHHcCCEEEEEC
Confidence 3466789999999999985 5999999999999999998 789999765 457765 33333334567899999887
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC-CCCCCCCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP-KDMDSFGLSLV 324 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g-~~m~~ldls~~ 324 (632)
.+ +++|+++|+++ +++|++.+.+|+||...|++ |.++|+++|+++++|+++..+ ....++ .+
T Consensus 128 ~~-------~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~---~~ 191 (412)
T 2cb1_A 128 PE-------PEAVREALSAK------TRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPL---AW 191 (412)
T ss_dssp SS-------HHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGG---GG
T ss_pred CC-------HHHHHHHhccC------CeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCcc---cc
Confidence 53 78888888653 58999999999999999999 999999999999999999887 321233 35
Q ss_pred CCcEEEEccccccCCCCCc-eEEEEEeCCCcc-----ccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhh
Q 006746 325 RPDFLICSFYQIFGENPSG-FGCLFVKKSTVP-----ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 398 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G-~G~L~Vr~~~~~-----~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 398 (632)
++|++++|+||++|. |.+ +|++++.++... .+.++...|.... .. +... ......
T Consensus 192 ~~di~~~S~~K~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~----~~~~-------------~~~~~~ 252 (412)
T 2cb1_A 192 GAHVVVESLTKWASG-HGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW-EA----LRAR-------------CFPERV 252 (412)
T ss_dssp TCSEEEEETTTTTTC-SSCCCCEEEEECCCSGGGGSGGGGCC-------H-HH----HGGG-------------HHHHHH
T ss_pred CCeEEEECCcccccC-CCCcEEEEEEeccccccccccccccccccccchh-hc----cchH-------------HHHHHH
Confidence 799999999998875 666 899998874321 1222211111100 00 0000 000001
Q ss_pred hccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHH
Q 006746 399 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 478 (632)
Q Consensus 399 e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~ 478 (632)
+.++.+..+ . ...... .++....--.+....++...+..++.
T Consensus 253 r~~~~~~~g----------~-~~~~~~---------------------------a~~~~~~l~~l~~~~~~~~~~~~~l~ 294 (412)
T 2cb1_A 253 RTLGLSLCG----------M-ALSPFN---------------------------AYLLFQGLETVALRVARMSETARFLA 294 (412)
T ss_dssp HHHHTTTTC----------C-CCCHHH---------------------------HHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC----------C-CCChHH---------------------------hHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 111111111 0 000000 11111111123444555668889999
Q ss_pred HHHHccCCCCCCCCCcEE-EECCCCC------------CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccC----
Q 006746 479 NALMKLQHPNTEGNALVK-IYGPKIR------------FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG---- 541 (632)
Q Consensus 479 ~~L~~l~h~~~~G~p~v~-Iygp~~~------------~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G---- 541 (632)
+.|.++ |.|. +++|... ..++++++|++ + +.+.+.+++++.||.+ +|
T Consensus 295 ~~L~~~--------~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~------~~~~~~~~l~~~~i~~-~~s~g~ 358 (412)
T 2cb1_A 295 ERLQGH--------PKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G------DLERASRFLGAIRLLK-AANLGD 358 (412)
T ss_dssp HHHHTC--------TTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S------SHHHHHHHHHHCSSEE-CSCCSC
T ss_pred HHHHcC--------CCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C------CHHHHHHHHHhCCeee-ecccCC
Confidence 999876 4455 6666432 14689999998 5 5678888999999999 88
Q ss_pred -----ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 006746 542 -----SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 542 -----~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~ 608 (632)
++|......... ...+++. +...+.||+|+|.+++.+||++|.++|++
T Consensus 359 ~~sl~~~~~~~~~~~~~---~~~~~~~----------------g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 359 ARTLLVHPWTTTHSRLK---EEARLQA----------------GVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SSCEEECTTTTTTTTSC---HHHHHHT----------------TCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CcceeecCcccccccCC---HHHHHhc----------------CCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 467654322110 0111111 12357999999999999999999999864
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=234.54 Aligned_cols=365 Identities=12% Similarity=0.052 Sum_probs=234.1
Q ss_pred CceEeecCCCCCCCHHHHHHH-hcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQ-ESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~-~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
...||+|..+++.|..++..+ ..+.+. |..+ +..+.....+.+++++.+++++|++
T Consensus 92 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~----------------------~~~~-~~~~~~~~~le~~~~~~la~~~g~~ 148 (504)
T 2okj_A 92 HPRFFNQLSTGLDIIGLAGEWLTSTANT----------------------NMFT-YEIAPVFVLMEQITLKKMREIVGWS 148 (504)
T ss_dssp CTTEESSSSCCCCHHHHHHHHHHHHHCC----------------------BSSC-TTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEccCCCCHHHHHHHHHHHhhcc----------------------CCCc-hhhChHHHHHHHHHHHHHHHHhCCC
Confidence 456999999998888776543 222211 1100 0011113466778889999999998
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCC-------CCC-----C-eEEEe-ccccchhhHHHHHHHHhcCC---EEEEEeccC
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPF-------MSV-----K-NLLTV-YDYESEAVEAMIRTSEKRGA---RVMSAEFSW 249 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~-------~~g-----d-~ilt~-~d~~s~~v~~~~~~a~~~G~---~v~~v~~~~ 249 (632)
.+...++||+|+|+|+.+++.++.. ++| + +|+++ ..|++ + ...++..|. +++.+|.+
T Consensus 149 ~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s--~---~~~~~~~g~g~~~v~~v~~~- 222 (504)
T 2okj_A 149 SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS--I---KKAGAALGFGTDNVILIKCN- 222 (504)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH--H---HHHHHHTTSCGGGEEEECBC-
T ss_pred CCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH--H---HHHHHHcCCCcccEEEEecC-
Confidence 4234799999999999988877631 245 5 56655 46664 2 223344455 89999987
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC---CCCCCCC-C
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM---DSFGLSL-V 324 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m---~~ldls~-~ 324 (632)
+++.+++++|+++|++......++++|++++.+|.||...|++ |+++|+++|++++||+++.++.-. ....+.. .
T Consensus 223 ~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~ 302 (504)
T 2okj_A 223 ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 302 (504)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcc
Confidence 6788999999999976321122478999999999999999999 999999999999999998776410 0123332 3
Q ss_pred CCcEEEEccccccCCCCCceEEEEEeCC-Cccc---cCCCCC-CCcee--ecccccccccccccCCCCCCccccchhhhh
Q 006746 325 RPDFLICSFYQIFGENPSGFGCLFVKKS-TVPI---LVDNTS-SGMVS--LLPAKKQLWLTDEFSSCETEPEQTSKSKQE 397 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G~G~L~Vr~~-~~~~---L~~~~~-gG~v~--~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 397 (632)
++|++++++||++|. |.|+|++++|++ .+.. ..+.+. ++... ...... .| .++
T Consensus 303 ~~D~i~~~~hK~~~~-p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~--------~~~---------- 362 (504)
T 2okj_A 303 RANSVTWNPHKMMGV-LLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG-DK--------AIQ---------- 362 (504)
T ss_dssp GCSEEEECTTSTTCC-CSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCG-GG--------SSC----------
T ss_pred cCCEEEECchhhcCC-CcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcc-cC--------CCC----------
Confidence 789999999999887 889999999985 4332 122222 21110 000000 00 000
Q ss_pred hhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHH
Q 006746 398 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477 (632)
Q Consensus 398 ~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L 477 (632)
.+..+ + ..++. .++..+...|+..+.+|...++++|
T Consensus 363 ---~~rr~-----------~------~l~~~------------------------a~l~~lg~~g~~~~~~~~~~~a~~l 398 (504)
T 2okj_A 363 ---CGRHV-----------D------IFKFW------------------------LMWKAKGTVGFENQINKCLELAEYL 398 (504)
T ss_dssp ---SSCBC-----------C------HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCc-----------c------HHHHH------------------------HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 00000 0 01111 3344444567889999999999999
Q ss_pred HHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC--C----C-------ccCHHHHHHHHHhCCc-EEccCcc
Q 006746 478 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--R----E-------KIEPVLVQKLADRENI-SLSYGSL 543 (632)
Q Consensus 478 ~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~--G----~-------~i~~~~V~kla~~~gI-~lr~G~~ 543 (632)
.+.|.++ |.++++++. ....++|+|.+.+.. + . .....+.++|.+ .|+ .++.+.
T Consensus 399 ~~~L~~~--------~~~~~~~~~--~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~G~~~~~~~~- 466 (504)
T 2okj_A 399 YAKIKNR--------EEFEMVFNG--EPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQP- 466 (504)
T ss_dssp HHHHTTC--------TTEEESSSS--CCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHH-HTSCEEEEEE-
T ss_pred HHHHhcC--------CCEEEEecC--CCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHh-CCcEEEEeeE-
Confidence 9999886 678998752 146788999875421 0 0 001122333333 343 332110
Q ss_pred CChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccC-CCCCHHHHHHHHHHHHHhhhh
Q 006746 544 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 544 c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg-~~~t~eDV~rlv~~l~~~l~~ 612 (632)
. .+ ..++||+|++ +++|.+||+++++.|+++++.
T Consensus 467 ----------------------------~------~~-~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 467 ----------------------------Q------GD-KANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp ----------------------------E------TT-EEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred ----------------------------E------CC-ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 00 1258999996 999999999999999988653
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=248.18 Aligned_cols=362 Identities=15% Similarity=0.107 Sum_probs=243.5
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccc--hhHHHHHHHHHHHHHcCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ--ESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~--~~~~~~~~R~~ia~~l~a~ 186 (632)
.+.| .++.++.|+.+++++.+.+... |..++|.+.+ |++. ..++++.+|+++++++|++
T Consensus 46 ~i~L-~a~e~~~~~~V~eA~~~~l~~~-----------------~~~g~p~~~~-y~~~~~~~~le~~~~~~~a~~~g~~ 106 (483)
T 1rv3_A 46 GLEL-IASENFASRAVLEALGSCLNNK-----------------YSLGYPGQRY-YGGTEHIDELETLCQKRALQAYGLD 106 (483)
T ss_dssp SEEC-CTTCCCCCHHHHHHHTSGGGTC-----------------CCCEETTEES-SSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CeEE-EcCCCCCCHHHHHHHHHHHhcc-----------------CcccCCCccc-cCcchhHHHHHHHHHHHHHHHhCCC
Confidence 4555 4667789999999987655321 1114554443 3322 2567789999999999998
Q ss_pred CCC--ccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHH---HHHhcC--CEEEEEeccCCccccCHHH
Q 006746 187 END--YGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIR---TSEKRG--ARVMSAEFSWPRLRINSEK 258 (632)
Q Consensus 187 ~~e--y~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~---~a~~~G--~~v~~v~~~~~~~~i~~~~ 258 (632)
+++ ..|++|+|+ +++..+..++ +++||+|++ ..+|.+....+... .++..| ++++.++++..++.+|.++
T Consensus 107 ~~~~~~~V~~~sGs-~an~~~~~al-l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~ 184 (483)
T 1rv3_A 107 PQCWGVNVQPYSGS-PANFAVYTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDR 184 (483)
T ss_dssp TTTEEEECCCSSHH-HHHHHHHHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHH
T ss_pred cccCceEEEECCcH-HHHHHHHHHh-cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHH
Confidence 654 247777766 7777778888 799999765 45666532222100 001123 4444444464567899999
Q ss_pred HHHHHH-hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCC---CCcEEEEcc
Q 006746 259 LRKMVV-SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLV---RPDFLICSF 333 (632)
Q Consensus 259 l~~~i~-~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~---~~Df~~~S~ 333 (632)
|+++++ .+ ++++++ +.+|.+ ...|++ |.++|+++|+++++|++|+.|. ...++..+ ++|++++|+
T Consensus 185 le~~i~~~~------tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~--~~~~~~~~p~~~~div~~s~ 254 (483)
T 1rv3_A 185 LEENARLFH------PKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGL--VVAGVVPSPFEHCHVVTTTT 254 (483)
T ss_dssp HHHHHHHHC------CSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHH--HHHTSSCCGGGTCSEEEEES
T ss_pred HHHHHhhcC------CcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcc--cccCCCCCCCCCCcEEEecC
Confidence 999998 43 488988 889988 899999 9999999999999999988654 23333333 689999999
Q ss_pred ccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhh
Q 006746 334 YQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 413 (632)
Q Consensus 334 hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~ 413 (632)
||+++. |.| |+++++++... ++ ..+|.... |. +. ..+. .. .+.+
T Consensus 255 ~K~l~G-prg-G~i~~~~~~~~-~~--~~~g~~~~-------y~--------~~-----~~~~---~~--~~~~------ 298 (483)
T 1rv3_A 255 HKTLRG-CRA-GMIFYRRGVRS-VD--PKTGKEIL-------YN--------LE-----SLIN---SA--VFPG------ 298 (483)
T ss_dssp SGGGCC-CSC-EEEEEECSBCC----------CCB-------CC--------HH-----HHHH---HH--HTTT------
T ss_pred cccCCC-CCc-eEEEEcchhhh-hc--cccCcchh-------hH--------HH-----HHhh---hh--cCCc------
Confidence 996643 989 99999988653 33 12222100 00 00 0000 00 0000
Q ss_pred hhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 006746 414 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA 493 (632)
Q Consensus 414 ~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p 493 (632)
..|+++.+.+.++. .|++.+...+++.+.++.+.++++|.+.|.++ |
T Consensus 299 -~~g~~~~~~iaal~------------------------~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g-- 345 (483)
T 1rv3_A 299 -LQGGPHNHAIAGVA------------------------VALKQAMTPEFKEYQRQVVANCRALSAALVEL------G-- 345 (483)
T ss_dssp -TCCSCCHHHHHHHH------------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T--
T ss_pred -ccCCccHHHHHHHH------------------------HHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc------C--
Confidence 14677777788876 78888766678999999999999999999987 4
Q ss_pred cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEc----cCccCChHHHhHHHHhhhhhhhhhhccccc
Q 006746 494 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS----YGSLHHIWFSDKYQKEKDNVLEKTDREAKS 569 (632)
Q Consensus 494 ~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr----~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~ 569 (632)
++++++.. ....+.+.+.. .| ++...+.+++++.||.++ .|..|.
T Consensus 346 -~~~~~~~~---~~~~~~v~~~~-~g--~~~~~~~~~L~~~gI~v~~~~~pg~~~~------------------------ 394 (483)
T 1rv3_A 346 -YKIVTGGS---DNHLILVDLRS-KG--TDGGRAEKVLEACSIACNKNTCPGDKSA------------------------ 394 (483)
T ss_dssp -CEEGGGSC---SSSEEEEEGGG-GT--CCHHHHHHHHHHTTEECEEECCSSCSCT------------------------
T ss_pred -CEeccCCC---CCceEEEeccC-CC--CCHHHHHHHHHhCCcEEecCCCCCCCcC------------------------
Confidence 45665531 11233333332 12 577788888888999987 443221
Q ss_pred cccccccccCCCCCcEEEEccCCCCC----HHHHHHHHHHHHHhhhh
Q 006746 570 KSDNNRKDKANLGITVVTASLGYLAN----FEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 570 ~~~~~~~~~~~~~~~~VRvSlg~~~t----~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||+|++.+|| .+|+++++++|+++++.
T Consensus 395 -----------~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 395 -----------LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp -----------TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 134689999999999 99999999999998875
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-23 Score=216.58 Aligned_cols=340 Identities=15% Similarity=0.116 Sum_probs=234.4
Q ss_pred CCCCCCchhHHHHHHhhccCcCCCCceEeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccc
Q 006746 84 YPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL 162 (632)
Q Consensus 84 ~p~y~~~~~~d~iR~~ef~~L~~~~~vyLD~ag~gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~ 162 (632)
.+.|.......++++ +|.. ++.+.|+.+-..+ .|+.+++++.+.+.... .++.
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------------------~y~~--- 66 (363)
T 3ffh_A 13 LSSYKPGKREEEVMA-ELGL---TKITKLSSNENPLGTSKKVAAIQANSSVETE-------------------IYPD--- 66 (363)
T ss_dssp CCC----CHHHHHHH-TTTC---SCCEECSSCSCTTCCCHHHHHHHHTCBSCCC-------------------BC-----
T ss_pred CCCCCCCCCHHHHHH-hcCC---CceEEccCCCCCCCCCHHHHHHHHHHHHHhh-------------------cCCC---
Confidence 455654456666665 4652 5678888775553 57888888776442110 1111
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCE
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~ 241 (632)
....+.|+++++++|++++ .|+||+|+|+|+++++.++ +++||+|++. ..|++ ....++..|++
T Consensus 67 -------~~~~~lr~~la~~~~~~~~--~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~-----~~~~~~~~g~~ 131 (363)
T 3ffh_A 67 -------GWASSLRKEVADFYQLEEE--ELIFTAGVDELIELLTRVL-LDTTTNTVMATPTFVQ-----YRQNALIEGAE 131 (363)
T ss_dssp ---------CHHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CSTTCEEEEEESSCHH-----HHHHHHHHTCE
T ss_pred -------cchHHHHHHHHHHhCCChh--hEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCChHH-----HHHHHHHcCCE
Confidence 1235899999999999865 7999999999999999998 7899997654 45543 24456778999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccC---CCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALG---PKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~---g~~ 315 (632)
++.++.+ +++.+|+++|+++++++ ++++++++.+|+||..+|++ |.++++.. |+++++|.++.. +..
T Consensus 132 ~~~v~~~-~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~ 204 (363)
T 3ffh_A 132 VREIPLL-QDGEHDLEGMLNAIDEK------TTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQP 204 (363)
T ss_dssp EEEEECC-TTSCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCC
T ss_pred EEEecCC-CCCCcCHHHHHHhcccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccc
Confidence 9999998 46789999999988653 58999999999999999999 99988877 999999999872 110
Q ss_pred CCCCCC-CCCCCcEEEEccccccCCCCCce--EEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 316 MDSFGL-SLVRPDFLICSFYQIFGENPSGF--GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 316 m~~ldl-s~~~~Df~~~S~hK~~G~~P~G~--G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
...+.. ...+-++++.|+.|.+| +.|+ |+++++++.++.+.+... .|
T Consensus 205 ~~~~~~~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~~------------~~---------------- 254 (363)
T 3ffh_A 205 EKHEKLVRTYKNLIITRTFSKIYG--LASARVGYGIADKEIIRQLNIVRP------------PF---------------- 254 (363)
T ss_dssp CCCGGGGGTCTTEEEEEESSSTTC--CSSCCCEEEEECHHHHHHHHHTCC------------SC----------------
T ss_pred cCHHHHhhcCCCEEEEeechhhhc--CchhceeeeecCHHHHHHHHHhCC------------CC----------------
Confidence 011111 12344688999999999 5576 999998776654433110 00
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC 472 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~ 472 (632)
+.+.+...++. ++|+.. ..++.+.++.+.
T Consensus 255 -------------------------~~~~~~~~~~~------------------------~~l~~~--~~~~~~~~~~~~ 283 (363)
T 3ffh_A 255 -------------------------NTTSIGQKLAI------------------------EAIKDQ--AFIGECRTSNAN 283 (363)
T ss_dssp -------------------------CCBHHHHHHHH------------------------HHHHCH--HHHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHH------------------------HHhcCH--HHHHHHHHHHHH
Confidence 00111112221 444422 246788899999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHH
Q 006746 473 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 473 L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
+.+++.+.|.++ +.++++.+ .+..+.+.+.. +...+.+.+.++||.++.|..+.
T Consensus 284 ~~~~l~~~l~~~--------~g~~~~~~-----~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~------- 337 (363)
T 3ffh_A 284 GIKQYEAFAKRF--------EKVKLYPA-----NGNFVLIDLGI------EAGTIFSYLEKNGYITRSGAALG------- 337 (363)
T ss_dssp HHHHHHHHHHHC--------TTCEECCC-----CSSEEEEECSS------CHHHHHHHHHHTTEECEETTTTT-------
T ss_pred HHHHHHHHHhhC--------CCceECCC-----CCeEEEEECCC------CHHHHHHHHHHCCeEEEeCccCC-------
Confidence 999999999984 33566533 46677777653 45666666667899998764211
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
..+.||+|++ |.+|++++++.|+++|
T Consensus 338 -----------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 338 -----------------------------FPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp -----------------------------CTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred -----------------------------CCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 1369999988 9999999999998764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-24 Score=222.24 Aligned_cols=331 Identities=10% Similarity=0.045 Sum_probs=227.2
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
+..+|||+++.+..++.+++++.+.+... ... +| ..+..+++++.+++++|++
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~--------~~~-----------------~g--~~~~~~~~~~~l~~~~g~~ 65 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDNMTQ--------HAG-----------------YG--QDSHCAKAARLIGELLERP 65 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHTTCC--------CCS-----------------TT--CSHHHHHHHHHHHHHHTCT
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHHhhc--------ccc-----------------cc--ccHHHHHHHHHHHHHhCCC
Confidence 45799999999999999999987654311 000 01 2367789999999999987
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
++ .|+||+|+|+|+.+++.++ .++||+|++. ..|++ .... ..++..|++++.++.+ ++.+|+++|++.+++
T Consensus 66 ~~--~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~-~~~~--~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~ 137 (359)
T 1svv_A 66 DA--DVHFISGGTQTNLIACSLA-LRPWEAVIATQLGHIS-THET--GAIEATGHKVVTAPCP--DGKLRVADIESALHE 137 (359)
T ss_dssp TS--EEEEESCHHHHHHHHHHHH-CCTTEEEEEETTSHHH-HSST--THHHHTTCCEEEECCT--TSCCCHHHHHHHHHH
T ss_pred Cc--cEEEeCCchHHHHHHHHHH-hCCCCEEEEcccchHH-HHHH--HHHhcCCCeeEEEeCC--CCeecHHHHHHHHHH
Confidence 65 7999999999999999998 6789997754 46654 2221 1246689999999875 567999999999986
Q ss_pred cC-cCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccc---cCCCCCCCCCCCC----CCCcEEEEcc
Q 006746 266 KG-KKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACA---LGPKDMDSFGLSL----VRPDFLICSF 333 (632)
Q Consensus 266 ~~-~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq---~~g~~m~~ldls~----~~~Df~~~S~ 333 (632)
+. ....+++++++++. |.||..+| ++ |.++|+++|+++++|.++ ..+. .+++... ..+|++++++
T Consensus 138 ~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~d~~~~s~ 214 (359)
T 1svv_A 138 NRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSS--PVNDLTLADIARLTDMFYIGA 214 (359)
T ss_dssp SCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTS--TTCCCCHHHHHHHCSEEEEEC
T ss_pred HHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcC--CCcchhhhhhhhcCCEEEEec
Confidence 41 11124689999998 68999999 88 899999999999999998 4443 2344332 4689999999
Q ss_pred ccccCCCCCceEEEEEeCCCccccCCCCC-CCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhh
Q 006746 334 YQIFGENPSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIE 412 (632)
Q Consensus 334 hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~-gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~ 412 (632)
||++| |.|.|+++++++.++.+.+... +|.. +..
T Consensus 215 ~K~g~--~~~~g~l~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~----- 249 (359)
T 1svv_A 215 TKAGG--MFGEALIILNDALKPNARHLIKQRGAL--------------------------------------MAK----- 249 (359)
T ss_dssp TTTTC--SSCEEEEECSGGGCTTHHHHHHHTTCC--------------------------------------CTT-----
T ss_pred ccCCC--CCceEEEEEcccHHHHHHHHHhcCCcc--------------------------------------ccc-----
Confidence 99866 8899999998887665543210 0000 000
Q ss_pred hhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCC
Q 006746 413 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN 492 (632)
Q Consensus 413 ~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~ 492 (632)
..+...++ ...+...+++.+.++.+.+.++|.+.| ++
T Consensus 250 -------~~~~~~~~---------------------------~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~-------- 286 (359)
T 1svv_A 250 -------GWLLGIQF---------------------------EVLMKDNLFFELGAHSNKMAAILKAGL-EA-------- 286 (359)
T ss_dssp -------THHHHHHH---------------------------HHHTSTTHHHHHHHHHHHHHHHHHHHH-HH--------
T ss_pred -------chhhHHHH---------------------------HHHHhhhhHHHHHHHHHHHHHHHHHHh-cc--------
Confidence 00000111 112223346778899999999999999 55
Q ss_pred CcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccc
Q 006746 493 ALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD 572 (632)
Q Consensus 493 p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 572 (632)
+.+++++|. .+.++.+.+ +.+.++++++++||.+- |.
T Consensus 287 ~~~~~~~~~----~~~~~~~~~--------~~~~~~~l~~~~gi~v~-~~------------------------------ 323 (359)
T 1svv_A 287 CGIRLAWPS----ASNQLFPIL--------ENTMIAELNNDFDMYTV-EP------------------------------ 323 (359)
T ss_dssp TTCCBSSCC----SSSEECBEE--------EHHHHHHHTTTEECEEE-EE------------------------------
T ss_pred CCeEEccCC----ccceEEEEc--------CHHHHHHHHHhcCEEEE-ec------------------------------
Confidence 335565553 344444433 23455555554599881 10
Q ss_pred ccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 573 NNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 573 ~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.+.||+|+++.++.+||+++++.|+++++.
T Consensus 324 ------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 324 ------LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp ------ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred ------ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 0012468999999999999999999999988653
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-23 Score=226.10 Aligned_cols=173 Identities=12% Similarity=0.098 Sum_probs=137.6
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
|+......+++.|++|++++|++ ..|+|+ ++++|+++++.++ +++||+|++....+.....++...+++.|++++
T Consensus 108 y~r~~~~~~~~l~~~lA~l~g~~---~~v~~~-sG~~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~ 182 (445)
T 1qgn_A 108 YGRYGNPTTVVLEEKISALEGAE---STLLMA-SGMCASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITAT 182 (445)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS---EEEEES-CHHHHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---cEEEeC-CHHHHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEE
Confidence 44444577889999999999985 255555 5559999999987 688999876554443355555555678899999
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS 322 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls 322 (632)
.++.+ |+++|+++|++++ +++|.+.+.+|+||...|++ |.++|+++|+++++|.++..|....++
T Consensus 183 ~v~~~------d~~~l~~ai~~~t-----v~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~--- 248 (445)
T 1qgn_A 183 VIDPA------DVGALELALNQKK-----VNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKAL--- 248 (445)
T ss_dssp EECSS------CHHHHHHHHHHSC-----EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTT---
T ss_pred EeCCC------CHHHHHHHhccCC-----CCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc---
Confidence 98763 7899999998642 38999999999999999999 999999999999999999877521232
Q ss_pred CCCCcEEEEccccccCCCCCc---eEEEEEeCCCcccc
Q 006746 323 LVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPIL 357 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G---~G~L~Vr~~~~~~L 357 (632)
.+++|+++.|+||++| |.| .|+++.+++.++.+
T Consensus 249 ~~g~Div~~S~sK~~g--g~gd~~~G~l~~~~~l~~~l 284 (445)
T 1qgn_A 249 ALGADLVLHSATKFLG--GHNDVLAGCISGPLKLVSEI 284 (445)
T ss_dssp TTTCSEEEECTTTTTT--CSSSCCCEEEEECHHHHHHH
T ss_pred ccCCEEEEECCccccc--ccccceEEEEEECHHHHHHH
Confidence 4689999999999999 667 89999987665443
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=225.95 Aligned_cols=311 Identities=12% Similarity=0.067 Sum_probs=200.7
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCcc
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRL 252 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~ 252 (632)
+.|+++++++|++ + .|+++ |+|+|+.+++.++ +++||+|++ ...|++ ....+...++..|++++.++.
T Consensus 2 ~l~~~la~~~g~~-~--~i~~~-sG~~a~~~~~~~~-~~~g~~v~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A--CAATA-SGMGAIAASVWTF-LKAGDHLISDDCLYGC-THALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHHTCS-E--EEEES-SHHHHHHHHHHHH-CCTTCEEEEESCCCHH-HHHHHHTHHHHTTCEEEEECT-----
T ss_pred hHHHHHHHHhCCC-e--EEEeC-ChHHHHHHHHHHh-cCCCCEEEEcCCCcch-HHHHHHHHHHhcCCEEEEeCC-----
Confidence 5789999999986 2 45555 5599999999988 688999765 456665 333334445678999998875
Q ss_pred ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh-CCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 006746 253 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE-NDWHILIDACALGPKDMDSFGLSLVRPDFLI 330 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~-~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~ 330 (632)
.|.++++++++++ ++++++++.+|+||..+|++ |.++|++ +|+++++|+++..|.. ..++ .+++|+++
T Consensus 71 -~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~--~~~~-~~~~d~~~ 140 (331)
T 1pff_A 71 -AVPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL--TNPL-DLGVDIVV 140 (331)
T ss_dssp -TSTTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH--CCGG-GGTCSEEE
T ss_pred -CCHHHHHHhhcCC------CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCccccc--CChh-hcCCcEEE
Confidence 3567888877643 58999999999999999999 9999999 9999999999987641 2233 46899999
Q ss_pred EccccccCCCCCc--eEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCc
Q 006746 331 CSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 407 (632)
Q Consensus 331 ~S~hK~~G~~P~G--~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~ 407 (632)
+|+||+||. |.+ .|++++++ +.++.+.+...++ | .++
T Consensus 141 ~s~~K~~~~-~~~r~~G~~~~~~~~~~~~l~~~~~~~-----------~-----------------------~~~----- 180 (331)
T 1pff_A 141 HSATKYING-HTDVVAGLVCSRADIIAKVKSQGIKDI-----------T-----------------------GAI----- 180 (331)
T ss_dssp EETTTTTSS-SSSCCCEEEEECHHHHHHHHHTCCCCC-----------C-----------------------CCC-----
T ss_pred EECccccCC-CCCceEEEEEeCcHHHHHHHHHHHHhh-----------c-----------------------CCC-----
Confidence 999998875 766 79999988 7665554422110 0 000
Q ss_pred cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccC--
Q 006746 408 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ-- 485 (632)
Q Consensus 408 ~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~-- 485 (632)
.+......+. ++++.... -++...+....+.+++.+. ..++
T Consensus 181 -----------~~~~~~~~~~------------------------~~l~~~~~-~~~~~~~~~~~~~~~l~~~-~~l~~~ 223 (331)
T 1pff_A 181 -----------ISPHDAWLIT------------------------RGTLTLDM-RVKRAAENAQKVAEFLHEH-KAVKKV 223 (331)
T ss_dssp -----------CCHHHHHHHH------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHC-TTCCCE
T ss_pred -----------CCHHHHHHHH------------------------cCcchHHH-HHHHHHHHHHHHHHHHHcC-CCeeEE
Confidence 0000001111 34443321 1344445555555555432 1110
Q ss_pred -CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccC---------ccCChHHHhHHHHh
Q 006746 486 -HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG---------SLHHIWFSDKYQKE 555 (632)
Q Consensus 486 -h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G---------~~c~~~~~~~~~~~ 555 (632)
++.-...|.++++++.. ..++++++|.+. +.+.+.+++++.||.++.+ ++|.........
T Consensus 224 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~-- 293 (331)
T 1pff_A 224 YYPGLPDHPGHEIAKKQM-KMFGSMIAFDVD-------GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVP-- 293 (331)
T ss_dssp ECTTSTTSTTHHHHHHHC-SSCCSEEEEECS-------SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSC--
T ss_pred ECCCCCCCccHHHHHhhC-CCCceEEEEEEC-------CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccC--
Confidence 00000123344444322 236889999875 3567888899999987654 455543211110
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
...+.. .+...+.||+|+|.++|.+||++|+++|+++
T Consensus 294 -~~~~~~----------------~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 294 -KEEREA----------------AGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp -HHHHHH----------------TTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred -HHHHHh----------------cCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 000000 1123479999999999999999999998764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-23 Score=216.80 Aligned_cols=352 Identities=9% Similarity=0.017 Sum_probs=226.2
Q ss_pred CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeC
Q 006746 117 IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTA 196 (632)
Q Consensus 117 ~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~ 196 (632)
.+++|+.+++++.+.+... + .++ ...+.+.|+.|++++|++ .++||+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~--------~-----------~~~----------~~~~~~l~~~la~~~~~~----~v~~~~ 54 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSK--------Q-----------LTQ----------GKRSLLFEEALCEFLGVK----HALVFN 54 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSS--------C-----------CSS----------SHHHHHHHHHHHHHHTCS----EEEEES
T ss_pred CCCCCHHHHHHHHHHHHcC--------c-----------ccC----------ChHHHHHHHHHHHHhCCC----eEEEeC
Confidence 5788999999987644210 0 111 245679999999999986 699999
Q ss_pred CHHHHHHHHHhhCC--CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCce
Q 006746 197 NRTSAFKLLAESYP--FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR 273 (632)
Q Consensus 197 naT~al~lv~~sl~--~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~ 273 (632)
|+|+|+.+++.++. +++||+|++. ..|++ .. ..++..|++++.++++ +++.+|+++|+++++++ +
T Consensus 55 ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~-~~----~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~------~ 122 (375)
T 2fnu_A 55 SATSALLTLYRNFSEFSADRNEIITTPISFVA-TA----NMLLESGYTPVFAGIK-NDGNIDELALEKLINER------T 122 (375)
T ss_dssp CHHHHHHHHHHHSSCCCTTSCEEEECSSSCTH-HH----HHHHHTTCEEEECCBC-TTSSBCGGGSGGGCCTT------E
T ss_pred CHHHHHHHHHHHhcccCCCCCEEEECCCccHh-HH----HHHHHCCCEEEEeccC-CCCCCCHHHHHhhcCcC------c
Confidence 99999999999997 7899997754 56665 22 2345689999999987 44578999988877643 5
Q ss_pred eEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC--CCCCCCcEEEEc--cccccCCCCCceEEEE
Q 006746 274 GLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG--LSLVRPDFLICS--FYQIFGENPSGFGCLF 348 (632)
Q Consensus 274 ~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld--ls~~~~Df~~~S--~hK~~G~~P~G~G~L~ 348 (632)
+++++.+. ||...|++ |.++|+++|+++++|+++..+.. ..+ +..++ |++++| .||++| | |+|+++
T Consensus 123 ~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~~~-~i~~~s~s~~K~~~--~-g~g~~~ 193 (375)
T 2fnu_A 123 KAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSE--YQNKKVGGFA-LASVFSFHAIKPIT--T-AEGGAV 193 (375)
T ss_dssp EEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCE--ETTEETTSSS-SEEEEECCTTSSSC--C-SSCEEE
T ss_pred eEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCe--ECCeeccccC-CeEEEeCCCCCCcc--c-cCceEE
Confidence 77777766 99999999 99999999999999999988752 222 32333 555555 559998 8 899999
Q ss_pred EeC--CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhH
Q 006746 349 VKK--STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 426 (632)
Q Consensus 349 Vr~--~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~ 426 (632)
+++ +.++.+.+...+|..+. ..| .+ +.++..+.. .+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------------~~---~~~~~~~~~---------------~~~~ 233 (375)
T 2fnu_A 194 VTNDSELHEKMKLFRSHGMLKK-----DFF-----------------EG---EVKSIGHNF---------------RLNE 233 (375)
T ss_dssp EESCHHHHHHHHHHTBTTEEES-----SSS-----------------CE---EESSCCCBC---------------CCCH
T ss_pred EeCCHHHHHHHHHHHhcCCccc-----ccc-----------------cc---ccccccccC---------------CCCH
Confidence 963 35455544322222110 001 00 111111110 0011
Q ss_pred hhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCC
Q 006746 427 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 506 (632)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~r 506 (632)
+. .++.+....+++.+.++.+.+.+++.+.|.++ |.++++++......
T Consensus 234 ~~------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~ 281 (375)
T 2fnu_A 234 IQ------------------------SALGLSQLKKAPFLMQKREEAALTYDRIFKDN--------PYFTPLHPLLKDKS 281 (375)
T ss_dssp HH------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC--------SSEEESGGGCSSCC
T ss_pred HH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCccccCCCCCCCc
Confidence 11 33333334578899999999999999999887 66888776311112
Q ss_pred -CcEEEEEEccCCCCcc-CHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCc
Q 006746 507 -GPALAFNVFDWKREKI-EPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 584 (632)
Q Consensus 507 -g~ivaFnv~~~~G~~i-~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 584 (632)
+.++.+.+.+. | + +...+.+.+.++||.++.+ |.+.......+. . +.... +. + ......+
T Consensus 282 ~~~~~~~~~~~~-~--~~~~~~l~~~L~~~gi~v~~~--~~p~~~~~~~~~--~-~~~~~-~~-----~----~~~~~~~ 343 (375)
T 2fnu_A 282 SNHLYPILMHQK-F--FTCKKLILESLHKRGILAQVH--YKPIYQYQLYQQ--L-FNTAP-LK-----S----AEDFYHA 343 (375)
T ss_dssp CCSCEEEEECGG-G--GGGHHHHHHHHHHTTEECBCC--CCCGGGSHHHHH--H-HCCCC-CH-----H----HHHHHHH
T ss_pred ceEEEEEEeCcc-c--cchHHHHHHHHHHCCCCcccc--ccccccchhhhc--C-CCccC-Ch-----H----HHHHHhC
Confidence 23444555431 1 3 4566666667789999843 444321111000 0 00000 00 0 0001236
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 585 VVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 585 ~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.||+|++.++|.+||+++++.|+++++.
T Consensus 344 ~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 344 EISLPCHANLNLESVQNIAHSVLKTFES 371 (375)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=224.21 Aligned_cols=200 Identities=9% Similarity=0.010 Sum_probs=141.1
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
..-.||.+.+.....+.+++..+ .|+.+.+.|+.......+++|+++++++|++
T Consensus 28 ~~~p~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~-- 81 (398)
T 1gc0_A 28 LVPPVYQTATFTFPTVEYGAACF------------------------AGEQAGHFYSRISNPTLNLLEARMASLEGGE-- 81 (398)
T ss_dssp SSCCBCCCSCBCCC---------------------------------------------CCHHHHHHHHHHHHHHTCS--
T ss_pred cCCCccCCCccccCCHHHHHHhh------------------------cCCcCCCcccCCCChHHHHHHHHHHHHhCCC--
Confidence 45678888887766665553211 2222333344434577889999999999985
Q ss_pred CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcC
Q 006746 189 DYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG 267 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~ 267 (632)
..+++.|+|+|+.+++.++ +++||+|++. ..|++ ....+...++..|++++.++.+ +.++|+++|+++
T Consensus 82 --~~i~~~sG~~a~~~~l~~~-~~~gd~vl~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~i~~~- 150 (398)
T 1gc0_A 82 --AGLALASGMGAITSTLWTL-LRPGDEVLLGNTLYGC-TFAFLHHGIGEFGVKLRHVDMA------DLQALEAAMTPA- 150 (398)
T ss_dssp --EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCSH-HHHHHHHTGGGGTCEEEEECTT------CHHHHHHHCCTT-
T ss_pred --cEEEECCHHHHHHHHHHHH-hcCCCEEEEeCCCchh-HHHHHHHHHHHcCCEEEEECCC------CHHHHHHhcCCC-
Confidence 3455666789999999988 6889997754 56765 3444344457789999988753 788999888653
Q ss_pred cCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc--e
Q 006746 268 KKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--F 344 (632)
Q Consensus 268 ~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G--~ 344 (632)
+++|++...+|+||...|++ |.++|+++|+++++|.++..+..-.++ .+++|+++.|+||++|. |.+ .
T Consensus 151 -----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~---~~~~d~~~~S~sK~~~~-~~~~~~ 221 (398)
T 1gc0_A 151 -----TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL---ELGADLVVHSATKYLSG-HGDITA 221 (398)
T ss_dssp -----EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG---GGTCSEEEEETTTTTTC-SSSCCC
T ss_pred -----CeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCch---hhCceEEEECCccccCC-CCCCeE
Confidence 58999999999999999999 999999999999999998876411133 35789999999998885 554 5
Q ss_pred EEEEEeCCCc
Q 006746 345 GCLFVKKSTV 354 (632)
Q Consensus 345 G~L~Vr~~~~ 354 (632)
|+++++++.+
T Consensus 222 G~l~~~~~~~ 231 (398)
T 1gc0_A 222 GIVVGSQALV 231 (398)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEChHHH
Confidence 9998887654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=223.43 Aligned_cols=320 Identities=13% Similarity=0.103 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+++.|+++++++|++ .++||+|+|+|+.+++.++.+++||+|++ ...|++ .. ..++..|++++.++.+
T Consensus 36 ~~~~~l~~~la~~~~~~----~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~-~~----~~~~~~g~~~~~~~~~ 106 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVN----YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIA-TA----LAVSYTGAKPIFVEPD 106 (373)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTH-HH----HHHHHHSCEEEEECEE
T ss_pred chHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHH-HH----HHHHHcCCEEEEEecc
Confidence 56679999999999985 58999999999999999998889999765 457775 22 3356679999999988
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC--
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR-- 325 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~-- 325 (632)
..++.+|+++|+++|+++ +++++ .+|+||...|++ |.++|+++|+++++|++|+.|. .++...++
T Consensus 107 ~~~~~~d~~~l~~~l~~~------~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~~~ 174 (373)
T 3frk_A 107 IRTYNIDPSLIESAITEK------TKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGS---LYKGMKVGSL 174 (373)
T ss_dssp TTTTEECGGGTGGGCCTT------EEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTC---EETTEETTSS
T ss_pred ccccCcCHHHHHHhcCCC------CeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCC---EECCEecccc
Confidence 566788999998887653 46666 567999999999 9999999999999999999876 24444444
Q ss_pred CcEEEEccc--cccCCCCCc-eEEEEEeCC-CccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 326 PDFLICSFY--QIFGENPSG-FGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 326 ~Df~~~S~h--K~~G~~P~G-~G~L~Vr~~-~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
+|++++||+ |++| |.| .|+++.++. ..+.+++...+|... .+. . ...|
T Consensus 175 ~d~~~~S~~~~K~l~--~~g~gg~~~~~~~~~~~~~~~~~~~g~~~------~~~-~-------------------~~~g 226 (373)
T 3frk_A 175 GDAAGFSFYPAKNLG--SLGDGGAVVTNDKDLAEKIKALSNYGSEK------KYH-H-------------------IYKG 226 (373)
T ss_dssp SSEEEEECCTTSSSC--CSSSCEEEEESCHHHHHHHHHHHBTTCSB------TTB-C-------------------CSCC
T ss_pred ccEEEEeCcCCCccC--ccceeEEEEeCCHHHHHHHHHHHhcCccc------CCc-c-------------------cccc
Confidence 799999965 9888 534 455555443 333343322222110 000 0 0011
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
. ++. +..+. .++......+++.+.+|.+.+.+++.+.|
T Consensus 227 ~-~~~-----------------~~~~~------------------------aa~~~~~~~~~~~~~~~~~~~~~~~~~~l 264 (373)
T 3frk_A 227 F-NSR-----------------LDELQ------------------------AGFLRVKLKYLDKWNEERRKIAQKYIAGI 264 (373)
T ss_dssp C-BCC-----------------CCHHH------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred c-cCC-----------------CCHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 000 11122 45555555578899999999999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCc----cCChHHHhHHHHhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS----LHHIWFSDKYQKEKD 557 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~----~c~~~~~~~~~~~~~ 557 (632)
.++ + +++..... ......+.|.+.. .+...+.+.+.++||.++.++ +|.+.+...
T Consensus 265 ~~~--------~-~~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~------ 323 (373)
T 3frk_A 265 NNP--------N-VIIPVEAD-YAKHVWYTFVIRS-----EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDL------ 323 (373)
T ss_dssp CCT--------T-EECCCCCT-TEECCCSSEEEEE-----SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGG------
T ss_pred ccC--------c-eEeccCCC-CCceeeEEEEEEe-----CCHHHHHHHHHHCCCCcccCcCCccccChHHHhc------
Confidence 877 4 55543321 1233444555554 256677777777899999664 343322110
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+ +....... ......+.||+|++.++|.+||+++++.|++..+.
T Consensus 324 -----~--~~~~~~~~----~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 324 -----G--FKTGNFPI----AEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp -----C--CCTTSSHH----HHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred -----C--CCCCCCHH----HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 0 00000000 00112369999999999999999999999887654
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-22 Score=208.89 Aligned_cols=326 Identities=10% Similarity=0.069 Sum_probs=226.5
Q ss_pred CCceEeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
++.+.|+.+-..+ .|+.+++++.+.+... + .++ .....+.|+++++++|+
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--------~-----------~y~----------~~~~~~l~~~la~~~~~ 66 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAVVKA--------N-----------RYA----------KNEILMLGNKLAAHHQV 66 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTGGGT--------T-----------SCC----------HHHHHHHHHHHHHHTTS
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHhhC--------c-----------CCC----------CCchHHHHHHHHHHhCC
Confidence 4567777665443 6788888877644311 0 111 13456899999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
+++ .|+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.++.+ +++.+++++|+++|+
T Consensus 67 ~~~--~i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~-----~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~l~ 137 (354)
T 3ly1_A 67 EAP--SILLTAGSSEGIRAAIEAY-ASLEAQLVIPELTYGD-----GEHFAKIAGMKVTKVKML-DNWAFDIEGLKAAVA 137 (354)
T ss_dssp CGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEESSSCTH-----HHHHHHHTTCEEEEECCC-TTSCCCHHHHHHHHH
T ss_pred ChH--HEEEeCChHHHHHHHHHHH-hCCCCeEEECCCCchH-----HHHHHHHcCCEEEEecCC-CCCCCCHHHHHHHhc
Confidence 765 7999999999999999998 6889997754 45553 234567789999999987 467899999999998
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEeccccCCCC----CCCCC-CCCC-CCcEEEEcccc
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACALGPKD----MDSFG-LSLV-RPDFLICSFYQ 335 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~g~~----m~~ld-ls~~-~~Df~~~S~hK 335 (632)
+. ++++++++++.+|+||..+|++ +.++++. +|+++++|.++..... ...+. +... +.++++.|++|
T Consensus 138 ~~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 213 (354)
T 3ly1_A 138 AY----SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSK 213 (354)
T ss_dssp TC----SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSS
T ss_pred cC----CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChh
Confidence 31 1358999999999999999999 8888877 9999999999764210 00111 1223 56799999999
Q ss_pred ccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhh
Q 006746 336 IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415 (632)
Q Consensus 336 ~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~ 415 (632)
.+|.+..++|+++++++.++.+...... |
T Consensus 214 ~~g~~G~r~G~~~~~~~~~~~~~~~~~~------------~--------------------------------------- 242 (354)
T 3ly1_A 214 IHAMAGMRVGYAVAHPTVIALMGRYVAG------------E--------------------------------------- 242 (354)
T ss_dssp TTCCGGGCCEEEECCHHHHHHHGGGTTC------------S---------------------------------------
T ss_pred hccChhhhheeeecCHHHHHHHHHhcCC------------C---------------------------------------
Confidence 9984233478888876655444321100 0
Q ss_pred cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE
Q 006746 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV 495 (632)
Q Consensus 416 ~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v 495 (632)
+.+.+...++. ++|+.. ..++.+.++.+.+.++|.+.|.++ |.
T Consensus 243 --~~~~~~~~a~~------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~------~~--- 285 (354)
T 3ly1_A 243 --KINFSGVDAAL------------------------ASMNDS--AFITYSKKSNDVSRQILLKALEDL------KL--- 285 (354)
T ss_dssp --CCCHHHHHHHH------------------------HHTTCH--HHHHHHHHHHHHHHHHHHHHHHHH------TC---
T ss_pred --CCCHHHHHHHH------------------------HHhcCH--HHHHHHHHHHHHHHHHHHHHHHHC------CC---
Confidence 01111122221 344322 236788889999999999999887 32
Q ss_pred EEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccc
Q 006746 496 KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 575 (632)
Q Consensus 496 ~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 575 (632)
+++. ..+..+.+.+.+ +...+.+.+.++||.++ |.+|.
T Consensus 286 ~~~~-----~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~-g~~~~------------------------------ 323 (354)
T 3ly1_A 286 PYLP-----SEGNFVFHQLVV------PLKDYQTHMADAGVLIG-RAFPP------------------------------ 323 (354)
T ss_dssp CBCC-----CCSSEEEEECSS------CHHHHHHHHHHTTEECC-CCCTT------------------------------
T ss_pred eECC-----CCceEEEEECCC------CHHHHHHHHHHCCEEEe-ecCCC------------------------------
Confidence 2322 246677776654 45666666667899998 75432
Q ss_pred cccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 576 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 576 ~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
..+.||+|++ |.+||+++++.|++++...
T Consensus 324 ------~~~~iRis~~---~~~~i~~~~~~l~~~l~~~ 352 (354)
T 3ly1_A 324 ------ADNWCRISLG---TPQEMQWVADTMREFRKKS 352 (354)
T ss_dssp ------CTTEEEEECC---CHHHHHHHHHHHHHHHHTT
T ss_pred ------CCCEEEEEcC---CHHHHHHHHHHHHHHHHhh
Confidence 2358999976 8999999999999988754
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=213.34 Aligned_cols=339 Identities=12% Similarity=0.094 Sum_probs=232.6
Q ss_pred CceEeecCCCCC----CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc
Q 006746 108 NHTCLDYFGIGL----FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (632)
Q Consensus 108 ~~vyLD~ag~gl----~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l 183 (632)
+.-|+|.++..+ .++.+++++.+.+.... .++..+...+|. .+...+.++.|++++
T Consensus 63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~------------------~~~~~~~~~~G~--~~~~~~l~~~la~~~ 122 (427)
T 2w8t_A 63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEKFG------------------SGTCGSRMLNGT--FHDHMEVEQALRDFY 122 (427)
T ss_dssp TEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHC------------------SCCCSCTTTTCC--CHHHHHHHHHHHHHH
T ss_pred CceEEEEECcccccCCCCHHHHHHHHHHHHHhC------------------CCCcccccccCC--cHHHHHHHHHHHHHh
Confidence 456788777642 55777777655332110 011112222232 256789999999999
Q ss_pred CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 184 NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 184 ~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
|++ .++++.|+|+|+..++.++ .++||.|++....|.... ..++..|++++.++. +|+++|+++|
T Consensus 123 g~~----~~i~~~sGs~a~~~al~~l-~~~gd~vl~~~~~h~~~~----~~~~~~g~~~~~~~~------~d~~~le~~l 187 (427)
T 2w8t_A 123 GTT----GAIVFSTGYMANLGIISTL-AGKGEYVILDADSHASIY----DGCQQGNAEIVRFRH------NSVEDLDKRL 187 (427)
T ss_dssp TCS----EEEEESCHHHHHHHHHHHH-SCTTCEEEEETTCCHHHH----HHHHHSCSEEEEECT------TCHHHHHHHH
T ss_pred CCC----ceEEecCcHHHHHHHHHHh-cCCCCEEEECCcccHHHH----HHHHHcCCeeEEeCC------CCHHHHHHHH
Confidence 985 3566778888999888887 688999876654443222 334567999887753 5889999999
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC--------CCCCCCCCcEEEEccc
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS--------FGLSLVRPDFLICSFY 334 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~--------ldls~~~~Df~~~S~h 334 (632)
.+.. ..++++|++.++.|+||...|++ |.++|+++|+++++|.++..+.- .. +++. .++|+++.|++
T Consensus 188 ~~~~--~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~-~~~g~~~~~~~~~~-~~~di~~~s~s 263 (427)
T 2w8t_A 188 GRLP--KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFF-GPNGRGVYEAQGLE-GQIDFVVGTFS 263 (427)
T ss_dssp HTSC--SSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS-STTSCCHHHHTTCT-TCCSEEEEESS
T ss_pred Hhcc--CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCcccccc-CCCCCchHhhcCCC-cCCcEEEecch
Confidence 7631 12468999999999999999999 99999999999999999987641 11 5553 37899999999
Q ss_pred cccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhh
Q 006746 335 QIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR 414 (632)
Q Consensus 335 K~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~ 414 (632)
|++| +.| |+++.+++.++.+.+.. . .+. ..
T Consensus 264 K~~g--~~g-G~v~~~~~l~~~l~~~~-----------~--------------------~~~--~~-------------- 293 (427)
T 2w8t_A 264 KSVG--TVG-GFVVSNHPKFEAVRLAC-----------R--------------------PYI--FT-------------- 293 (427)
T ss_dssp STTC--SCC-EEEEECCTTGGGGGGTC-----------H--------------------HHH--SS--------------
T ss_pred hhhc--cCC-CEEEeCHHHHHHHHHhc-----------c--------------------ccc--cc--------------
Confidence 9999 557 99999988776554320 0 000 00
Q ss_pred hcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCc
Q 006746 415 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL 494 (632)
Q Consensus 415 ~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~ 494 (632)
++.+...+.++. ++|+.+.. ++.+.++.+.+.++|++.|.++ |
T Consensus 294 --~~~~~~~~aa~~------------------------~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~------g--- 336 (427)
T 2w8t_A 294 --ASLPPSVVATAT------------------------TSIRKLMT--AHEKRERLWSNARALHGGLKAM------G--- 336 (427)
T ss_dssp --CCCCHHHHHHHH------------------------HHHHHHTS--CHHHHHHHHHHHHHHHHHHHHH------T---
T ss_pred --CCCCHHHHHHHH------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc------C---
Confidence 011112222222 56666542 5788999999999999999987 4
Q ss_pred EEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccc
Q 006746 495 VKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNN 574 (632)
Q Consensus 495 v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 574 (632)
+.++++. ..++++.+.+.+. .....+.+.+.++||.++.|..+..
T Consensus 337 ~~~~~~~---~~~~~~~~~~~~~----~~~~~l~~~L~~~Gi~v~~~~~~~~---------------------------- 381 (427)
T 2w8t_A 337 FRLGTET---CDSAIVAVMLEDQ----EQAAMMWQALLDGGLYVNMARPPAT---------------------------- 381 (427)
T ss_dssp CEESCSS---CCSSEEEEEESSH----HHHHHHHHHHHHTTEECEEECTTTS----------------------------
T ss_pred CcccCCC---CCCCEEEEEECCH----HHHHHHHHHHHHCCeEEeeeCCCCC----------------------------
Confidence 3455442 2678888887641 2344455544456999987643221
Q ss_pred ccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 575 RKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 575 ~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.+.||+|++.++|.+||+++++.|+++++.
T Consensus 382 -----~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 382 -----PAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp -----CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 113468999999999999999999999998765
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=215.18 Aligned_cols=340 Identities=11% Similarity=0.077 Sum_probs=230.1
Q ss_pred CCceEeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (632)
Q Consensus 107 ~~~vyLD~ag~gl~----~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~ 182 (632)
++..|+|.++..++ ++.+++++.+.+... + . ....+.+.+| ......+.|++|+++
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~----~----~----------~~~~~~~~~g--~~~~~~~l~~~la~~ 102 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSH----G----F----------GMASVRFICG--TQDSHKELEQKLAAF 102 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHH----C----S----------CCCSCHHHHC--CBHHHHHHHHHHHHH
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHHHHh----C----C----------CCCCCCcccC--CcHHHHHHHHHHHHH
Confidence 45679998887654 678888766533211 0 0 0001111112 135678999999999
Q ss_pred cCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 183 LNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 183 l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
+|++ +.+++.|+|+|+.+++.++ .++||+|++.. .|.+ . ...++..|++++.++. ++.++|++
T Consensus 103 ~g~~----~~i~~~sGs~a~~~~~~~~-~~~gd~v~~~~~~~~~-~----~~~~~~~g~~~~~~~~------~d~~~l~~ 166 (401)
T 1fc4_A 103 LGME----DAILYSSCFDANGGLFETL-LGAEDAIISDALNHAS-I----IDGVRLCKAKRYRYAN------NDMQELEA 166 (401)
T ss_dssp HTCS----EEEEESCHHHHHHTTHHHH-CCTTCEEEEETTCCHH-H----HHHHHTSCSEEEEECT------TCHHHHHH
T ss_pred hCCC----cEEEeCChHHHHHHHHHHH-cCCCCEEEEcchhHHH-H----HHHHHHcCCceEEECC------CCHHHHHH
Confidence 9986 2456667789999988888 68899987655 4433 2 2345678999988763 47889999
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC--------CCCCCCCCcEEEEc
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS--------FGLSLVRPDFLICS 332 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~--------ldls~~~~Df~~~S 332 (632)
+|++......++++|++++.+|+||..+|++ |.++|+++|+++++|.++..+.. .+ +++.. ++|+++.|
T Consensus 167 ~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~-~~~g~~~~~~~~~~~-~~di~~~s 244 (401)
T 1fc4_A 167 RLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV-GENGRGSHEYCDVMG-RVDIITGT 244 (401)
T ss_dssp HHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTS-STTSCCHHHHTTCTT-CCSEEEEE
T ss_pred HHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccccc-CCCCCccHHHcCCCc-CCcEEEec
Confidence 8875210001358999999999999999999 99999999999999999864431 11 55543 67999999
Q ss_pred cccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhh
Q 006746 333 FYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIE 412 (632)
Q Consensus 333 ~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~ 412 (632)
++|+++. +.| |+++++++.++.+.... . .| .+
T Consensus 245 ~sK~~~~-~~g-G~~~~~~~~~~~l~~~~-----------~-~~-----------------~~----------------- 276 (401)
T 1fc4_A 245 LGKALGG-ASG-GYTAARKEVVEWLRQRS-----------R-PY-----------------LF----------------- 276 (401)
T ss_dssp SSSTTCS-SSC-EEEEECHHHHHHHHHHC-----------H-HH-----------------HH-----------------
T ss_pred chhhccC-CCC-EEEEcCHHHHHHHHHhC-----------c-Cc-----------------ee-----------------
Confidence 9998832 557 99999877655443210 0 00 00
Q ss_pred hhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCC
Q 006746 413 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN 492 (632)
Q Consensus 413 ~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~ 492 (632)
.++.+.....++. ++|+.+.. ++.+.++.+.+.+++.+.|.++ |.
T Consensus 277 ---~~~~~~~~~~a~~------------------------~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~------g~ 321 (401)
T 1fc4_A 277 ---SNSLAPAIVAASI------------------------KVLEMVEA--GSELRDRLWANARQFREQMSAA------GF 321 (401)
T ss_dssp ---SCCCCHHHHHHHH------------------------HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT------TC
T ss_pred ---CCCCCHHHHHHHH------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc------CC
Confidence 0111122222232 66776654 4788899999999999999987 43
Q ss_pred CcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccc
Q 006746 493 ALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD 572 (632)
Q Consensus 493 p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 572 (632)
+++ | ..+.++.+.+.+. .+...+.+.+.++||.++.|..|..
T Consensus 322 ---~~~-~----~~~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~~~~~~-------------------------- 363 (401)
T 1fc4_A 322 ---TLA-G----ADHAIIPVMLGDA----VVAQKFARELQKEGIYVTGFFYPVV-------------------------- 363 (401)
T ss_dssp ---CBC-C----SSSSEEEEEEECH----HHHHHHHHHHHHTTEECCEECTTSS--------------------------
T ss_pred ---ccc-C----CCCCEEEEEcCCh----HHHHHHHHHHHHCCcEEeeecCCCC--------------------------
Confidence 233 2 3678888887541 3445565555567999987754321
Q ss_pred ccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 573 NNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 573 ~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.+.||+|++.++|.+|++++++.|+++++.
T Consensus 364 -------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 364 -------PKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp -------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 112358999999999999999999999998764
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-23 Score=226.72 Aligned_cols=311 Identities=10% Similarity=0.080 Sum_probs=228.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCC----CCC---CeEEEec-cccchhhHHHHHHHHhcCC
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPF----MSV---KNLLTVY-DYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~----~~g---d~ilt~~-d~~s~~v~~~~~~a~~~G~ 240 (632)
.++.+++++.+++++|++.+...++||+|+|+|+.+++.++.- ++| ++|++.. .|++ ....++..|+
T Consensus 106 ~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~-----~~~~~~~~G~ 180 (497)
T 3mc6_A 106 RKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAG-----FDKAAYYFGM 180 (497)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHH-----HHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHH-----HHHHHHHcCC
Confidence 4677889999999999983334799999999999999988621 024 7777654 4443 2445667899
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-----
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK----- 314 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~----- 314 (632)
+++.++++..++.+|+++|+++|+++ +++|++++.+|.||...|++ |.++|+++|+++++|+++.++.
T Consensus 181 ~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~ 254 (497)
T 3mc6_A 181 KLRHVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFME 254 (497)
T ss_dssp EEEEECBCTTTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGT
T ss_pred eEEEEecCcccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhh
Confidence 99999998437789999999888653 58999999999999999999 9999999999999999976311
Q ss_pred -----CCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 315 -----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 315 -----~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
.+.+++....++|++++++||+++. |.|+|+++++++.+........ ..|....
T Consensus 255 ~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~--------- 313 (497)
T 3mc6_A 255 KAGYKNLPLLDFRVPGVTSISCDTHKYGFA-PKGSSVIMYRNSDLRMHQYYVN-----------PAWTGGL--------- 313 (497)
T ss_dssp TTTCCSCCCCSTTSTTCCEEEEETTTTTCC-CSSCEEEECSSHHHHTTTSCCB-----------TTCTTSC---------
T ss_pred hhcccCCccccccCCCCcEEEECchhhcCC-CCCceeEEecCHHHHhhhhccc-----------ccccCCC---------
Confidence 1124677778999999999997543 8899999999876533221100 0010000
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 469 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r 469 (632)
.+++.+ .|+.....+.++. .+++.+...|+..+.++
T Consensus 314 ----------~~~~~~----------~g~~~~~~~~a~~------------------------aal~~l~~~~~~~~~~~ 349 (497)
T 3mc6_A 314 ----------YGSPTL----------AGSRPGAIVVGCW------------------------ATMVNMGENGYIESCQE 349 (497)
T ss_dssp ----------BCCSSS----------CSSCBHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
T ss_pred ----------cCCcCc----------ccCCcchhHHHHH------------------------HHHHHHhHHHHHHHHHH
Confidence 011111 1222222233343 67888877889999999
Q ss_pred HHHHHHHHHHHHHc-cCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 470 GRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 470 ~~~L~~~L~~~L~~-l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
...+++++.+.|.+ + |.++++++ .++++++|...+ ++...+.+.+.++||.++.+.
T Consensus 350 ~~~~~~~l~~~L~~~~--------~g~~~~~~----~~~~~v~~~~~~-----~~~~~l~~~L~~~Gi~v~~~~------ 406 (497)
T 3mc6_A 350 IVGAAMKFKKYIQENI--------PDLDIMGN----PRYSVISFSSKT-----LNIHELSDRLSKKGWHFNALQ------ 406 (497)
T ss_dssp HHHHHHHHHHHHHHSC--------TTCEECSC----CCSSEEEEECTT-----TTHHHHHHHHHTTTCBCEECC------
T ss_pred HHHHHHHHHHHHHhcC--------CCEEEecC----CCeeEEEEeCCC-----CCHHHHHHHHHhCCEEEecCC------
Confidence 99999999999998 5 66788876 367899987654 567778777777899776331
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+|+++. .+|.+||+++++.|++.+..
T Consensus 407 ---------------------------------~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 407 ---------------------------------KPVALHMAFT-RLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp ---------------------------------SSCCEEEECC-TTTTCTHHHHHHHHHHHHHH
T ss_pred ---------------------------------CCCeEEEEEe-CCCHHHHHHHHHHHHHHHHH
Confidence 1236789888 78999999999999998865
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=216.95 Aligned_cols=294 Identities=14% Similarity=0.134 Sum_probs=212.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc--C
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS--W 249 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~--~ 249 (632)
.+.|+.|+++++++++ .|+||+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.++.+ .
T Consensus 64 ~~l~~~la~~~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~~~~ 135 (381)
T 1v2d_A 64 PALREALAEEFAVEPE--SVVVTSGATEALYVLLQSL-VGPGDEVVVLEPFFDV-Y----LPDAFLAGAKARLVRLDLTP 135 (381)
T ss_dssp HHHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEECEEET
T ss_pred HHHHHHHHHhcCCChh--hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEEeCCCCC
Confidence 4799999999999876 6999999999999999998 788999765 456664 2 23457789999999986 3
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCC-CCCCCCC--
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKD-MDSFGLS-- 322 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~-m~~ldls-- 322 (632)
+++.+++++|++++++ +++++++++.+|+||..+| ++ |+++|+++|+++++|.++..... ....++.
T Consensus 136 ~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~ 209 (381)
T 1v2d_A 136 EGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF 209 (381)
T ss_dssp TEEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH
T ss_pred ccCCcCHHHHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh
Confidence 4567899999887754 3589999999999999998 67 88999999999999999875310 0122222
Q ss_pred CCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 323 LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
..+.|+++.|+||++| +.| +|+++++++.++.+.... .. ..
T Consensus 210 ~~~~~~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~--------------------------------~~---~~ 252 (381)
T 1v2d_A 210 APERTFTVGSAGKRLE--ATGYRVGWIVGPKEFMPRLAGMR--------------------------------QW---TS 252 (381)
T ss_dssp CTTTEEEEEEHHHHTT--CGGGCCEEEECCTTTHHHHHHHH--------------------------------HH---HT
T ss_pred cCCCEEEEeechhhcC--CcccceEEEEeCHHHHHHHHHHH--------------------------------hh---cc
Confidence 3578999999999999 558 899999877655442210 00 00
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHH-hhCHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD-SLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~-~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.+.+.+...++. .+|+... ..+++.+.++.+.+.++|.+
T Consensus 253 ----------------~~~~~~~~~a~~------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (381)
T 1v2d_A 253 ----------------FSAPTPLQAGVA------------------------EALKLARREGFYEALREGYRRRRDLLAG 292 (381)
T ss_dssp ----------------SSCCHHHHHHHH------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cCCCcHHHHHHH------------------------HHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 011112222222 5666442 23578889999999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
.|.++ | ++++.|. .+..+.+.+.+. + +.+++.++||.++.|..|...
T Consensus 293 ~L~~~------g---~~~~~~~----~~~~~~~~~~~~-----~---~~~~l~~~gi~v~~g~~~~~~------------ 339 (381)
T 1v2d_A 293 GLRAM------G---LRVYVPE----GTYFLMAELPGW-----D---AFRLVEEARVALIPASAFYLE------------ 339 (381)
T ss_dssp HHHHT------T---CCEECCS----BSSEEEEECTTC-----C---HHHHHHHTCEECEEGGGGCSS------------
T ss_pred HHHHC------C---CEecCCC----cceEEEEecChH-----h---HHHHHHhCCEEEecchHhCCC------------
Confidence 99886 4 3455552 245666666541 2 778888899999877544320
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.+.||+|++. +.+||+++++.|+++++.
T Consensus 340 --------------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 340 --------------------DPPKDLFRFAFCK--TEEELHLALERLGRVVNS 370 (381)
T ss_dssp --------------------SCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred --------------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 1134699999987 999999999999998765
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-23 Score=219.03 Aligned_cols=351 Identities=11% Similarity=0.054 Sum_probs=234.4
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccc-hhHHHHHHHHHHHHHcCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~-~~~~~~~~R~~ia~~l~a~~ 187 (632)
..++|+++.+++|+.+++++.+.+... +..+++.+....|.. ..++.+.+|+.+++++|+++
T Consensus 24 ~~~~~~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~ 86 (405)
T 2vi8_A 24 AKIELIASENFVSRAVMEAQGSVLTNK-----------------YAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH 86 (405)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred cceeeccCcccCCHHHHHHHHHHhhcc-----------------cccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc
Confidence 457888999999999999987654210 001233332211222 23555568999999999974
Q ss_pred CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhH-HHH-HHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 188 NDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVE-AMI-RTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~-~~~-~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
..+++.|+|+|+.+++.++ +++||+|++. ..|++ ... +.. .. ...++++..++++..++.+|+++|+++|+
T Consensus 87 ---~~i~~~sGt~a~~~a~~~~-~~~gd~Vl~~~~~~~~-~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~l~~~i~ 160 (405)
T 2vi8_A 87 ---ANVQPHSGAQANMAVYFTV-LEHGDTVLGMNLSHGG-HLTHGSPVNF-SGVQYNFVAYGVDPETHVIDYDDVREKAR 160 (405)
T ss_dssp ---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTC-CTTTTCTTSH-HHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred ---eEEEecCcHHHHHHHHHHh-cCCCCEEEEecccccc-hhcccchhhh-ccceeEEEecccccccCCcCHHHHHHHHH
Confidence 3555556699999999998 7899997654 45554 221 110 11 11234777777653456789999999998
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEccccccCCC
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGEN 340 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~---~m~~ldls~~~~Df~~~S~hK~~G~~ 340 (632)
+. ++++++++. +..|...|++ |.++|+++|+++++|.++..+. ++....+ ..+|++++|+||++|.
T Consensus 161 ~~-----~~~~v~~~~--~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~--~~~di~~~s~sK~~~g- 230 (405)
T 2vi8_A 161 LH-----RPKLIVAAA--AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV--PYAHFVTTTTHKTLRG- 230 (405)
T ss_dssp HH-----CCSEEEECC--SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--TTCSEEEEESSSTTCC-
T ss_pred hc-----CCeEEEEeC--CCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCcc--ccCCEEEEeccccCCC-
Confidence 62 136777632 3457888999 9999999999999999987532 1112111 2689999999998864
Q ss_pred CCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcc
Q 006746 341 PSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLE 420 (632)
Q Consensus 341 P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~ 420 (632)
|.| |++++++++++.+.+.... | ..|+++
T Consensus 231 ~~g-G~~~~~~~~~~~l~~~~~~------------~--------------------------------------~~~~~~ 259 (405)
T 2vi8_A 231 PRG-GMILCQEQFAKQIDKAIFP------------G--------------------------------------IQGGPL 259 (405)
T ss_dssp CSC-EEEEECHHHHHHHHHHHTT------------T--------------------------------------TCSSCC
T ss_pred CCC-eEEEEcHHHHHHHHhhhcc------------c--------------------------------------ccCCCC
Confidence 778 9999987665444321000 0 012223
Q ss_pred cchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECC
Q 006746 421 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGP 500 (632)
Q Consensus 421 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp 500 (632)
...+.++. .+|+.+...+++.+.++.+.+.++|.+.|.++ | +++++|
T Consensus 260 ~~~~aa~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~ 306 (405)
T 2vi8_A 260 MHVIAAKA------------------------VAFGEALQDDFKAYAKRVVDNAKRLASALQNE------G---FTLVSG 306 (405)
T ss_dssp HHHHHHHH------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGG
T ss_pred HHHHHHHH------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC------C---CeEecC
Confidence 33334443 67777765678999999999999999999987 3 456665
Q ss_pred CCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCC
Q 006746 501 KIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 580 (632)
Q Consensus 501 ~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 580 (632)
. ..+.++.+.+.+. | ++...+.+.+.++||.++.|..+... . ..
T Consensus 307 ~---~~~~~~~~~~~~~-~--~~~~~~~~~l~~~gi~v~~g~~~~~~----~--------------------------~~ 350 (405)
T 2vi8_A 307 G---TDNHLLLVDLRPQ-Q--LTGKTAEKVLDEVGITVNKNTIPYDP----E--------------------------SP 350 (405)
T ss_dssp S---CSSSEEEEECGGG-T--CCHHHHHHHHHHHTEECEEECCTTCS----S--------------------------CT
T ss_pred C---CCceEEEEEccCC-C--CCHHHHHHHHHHcCceeccCcCcccc----C--------------------------CC
Confidence 2 2467777777642 1 46677777777889999987543100 0 01
Q ss_pred CCCcEEEEccCCC----CCHHHHHHHHHHHHHhhhh
Q 006746 581 LGITVVTASLGYL----ANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 581 ~~~~~VRvSlg~~----~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.+|+|++.+ .+.+|++++++.|+++++.
T Consensus 351 ~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 351 FVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 1235799999984 5799999999999998754
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=217.56 Aligned_cols=329 Identities=12% Similarity=0.051 Sum_probs=217.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-------------CCCCeEEEec-cccchhhHHHHHH
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPF-------------MSVKNLLTVY-DYESEAVEAMIRT 234 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~-------------~~gd~ilt~~-d~~s~~v~~~~~~ 234 (632)
.++.+++++.+++++|.+++...++||+|+|+|+..++.+... .+++.|+++. .|++ + ...
T Consensus 134 ~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s--~---~~~ 208 (511)
T 3vp6_A 134 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS--I---KKA 208 (511)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTH--H---HHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHH--H---HHH
Confidence 5777889999999999985444799999999998876554321 1345666554 5554 2 344
Q ss_pred HHhcCC---EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccc
Q 006746 235 SEKRGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACA 310 (632)
Q Consensus 235 a~~~G~---~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq 310 (632)
++..|+ +++.++.+ +++.+|+++|+++|.++......++++++++.+|.||..-|++ |+++|+++|++++||+++
T Consensus 209 ~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~ 287 (511)
T 3vp6_A 209 GAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAW 287 (511)
T ss_dssp HHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETT
T ss_pred HHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccc
Confidence 566777 89999998 6789999999999986532223478999999999999999999 999999999999999998
Q ss_pred cCCCCCC---CCCCC-CCCCcEEEEccccccCCCCCceEEEEEeCCC-cccc---CCCCCCCceeecccccccccccccC
Q 006746 311 LGPKDMD---SFGLS-LVRPDFLICSFYQIFGENPSGFGCLFVKKST-VPIL---VDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 311 ~~g~~m~---~ldls-~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~-~~~L---~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
.++.-.. ...+. ..++|++++++||++|. |.|+|+++++++. +..+ .+.+..+.-. .....+
T Consensus 288 ~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~---~~~~~~------ 357 (511)
T 3vp6_A 288 GGGLLMSRKHRHKLNGIERANSVTWNPHKMMGV-LLQCSAILVKEKGILQGCNQMHASYLFQQDK---HYDVSY------ 357 (511)
T ss_dssp GGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCC-CSCCEEEEESSTTHHHHHHCCCCTTTCCSSC---SSCGGG------
T ss_pred hhhHhhChhhhhhccCCccCCEEEECcccccCC-CcCeEEEEEeCHHHHHHHhccCCccccCccc---cccccc------
Confidence 7764100 11122 23679999999998876 8999999999864 2222 1222110000 000000
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
+. ..-+.. .|. .. .+.++- .+|..+...|
T Consensus 358 --~~------------~~~~~~-----------~~r-~~-~al~~~------------------------~al~~~g~~g 386 (511)
T 3vp6_A 358 --DT------------GDKAIQ-----------CGR-HV-DIFKFW------------------------LMWKAKGTVG 386 (511)
T ss_dssp --CC------------GGGSSC-----------SSC-CC-CHHHHH------------------------HHHHHHHHHH
T ss_pred --Cc------------cCCCCC-----------CCC-ch-HHHHHH------------------------HHHHHHhHHH
Confidence 00 000000 000 00 122222 5677666678
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC--CCcc-----------CHHHHHH
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--REKI-----------EPVLVQK 529 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~--G~~i-----------~~~~V~k 529 (632)
++.+.+|...+++++.+.|.++ |.++++.+. ....++|+|.+.... +..- ..++.++
T Consensus 387 l~~~~~~~~~~a~~l~~~L~~~--------pg~~l~~~~--~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~ 456 (511)
T 3vp6_A 387 FENQINKCLELAEYLYAKIKNR--------EEFEMVFNG--EPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKAL 456 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC--------TTEEESSSS--CCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--------CCEEEEecC--CCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 779998742 236788999875421 1000 0122333
Q ss_pred HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHH
Q 006746 530 LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 530 la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~ 608 (632)
|.++..+.+..+ . ...+.+.+|+++ +..+|.+||+++++.|++
T Consensus 457 L~~~G~~~~~~~------------------------------~------~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~ 500 (511)
T 3vp6_A 457 MMESGTTMVGYQ------------------------------P------QGDKANFFRMVISNPAATQSDIDFLIEEIER 500 (511)
T ss_dssp HHHHTSCEEEEE------------------------------E------ETTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEE------------------------------E------eCCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 333322222210 0 011235799999 899999999999999987
Q ss_pred hh
Q 006746 609 FL 610 (632)
Q Consensus 609 ~l 610 (632)
+-
T Consensus 501 ~~ 502 (511)
T 3vp6_A 501 LG 502 (511)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=211.83 Aligned_cols=339 Identities=10% Similarity=0.066 Sum_probs=234.6
Q ss_pred CCCCCCchhHHHHHHhhccCcCCCCceEeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccc
Q 006746 84 YPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL 162 (632)
Q Consensus 84 ~p~y~~~~~~d~iR~~ef~~L~~~~~vyLD~ag~gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~ 162 (632)
.++|........+++ +|.. ++.++|+.+-..+ .|+.+++++.+.+.... .++...
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------------------~y~~~~- 66 (365)
T 3get_A 11 LSNYEPGKDIEVIAK-EYGV---KEVIKLASNENPFGTPPKAIECLRQNANKAH-------------------LYPDDS- 66 (365)
T ss_dssp SCCCCCCCCHHHHHH-HTTC---SCCEECSSCCCTTCSCHHHHHHHHHHGGGTT-------------------SCCCTT-
T ss_pred cCCCCCCCCHHHHHH-hcCC---CceEEecCCCCCCCCCHHHHHHHHHHHHhhc-------------------cCCCCC-
Confidence 455655455666665 3653 5678888765543 67888888765432110 111111
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCE
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~ 241 (632)
. .+.|++|++++|++++ .|+||+|+|+|+.+++.++ +++||+|++.. .|++ ....++..|++
T Consensus 67 ------~---~~lr~~la~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~-----~~~~~~~~g~~ 129 (365)
T 3get_A 67 ------M---IELKSTLAQKYKVQNE--NIIIGAGSDQVIEFAIHSK-LNSKNAFLQAGVTFAM-----YEIYAKQCGAK 129 (365)
T ss_dssp ------C---HHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTH-----HHHHHHHHTCE
T ss_pred ------h---HHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHHH-hCCCCEEEEeCCChHH-----HHHHHHHcCCE
Confidence 1 3789999999999765 7999999999999999998 78999987653 4542 23456778999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHh--hCCcEEEEecccc------C
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQ--ENDWHILIDACAL------G 312 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~--~~g~~vlvDaaq~------~ 312 (632)
++.++++..++ +++++|+++++++ ++++++++.+|+||..+|++ +.++++ ++|+++++|.++. .
T Consensus 130 ~~~v~~~~~~~-~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~ 202 (365)
T 3get_A 130 CYKTQSITHNL-DEFKKLYETHKDE------IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKD 202 (365)
T ss_dssp EEECSSSSCCH-HHHHHHHHHTTTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHC
T ss_pred EEEEecCCCCC-CCHHHHHHHhCCC------CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccC
Confidence 99998832566 8999999988753 58999999999999999999 888887 6799999999987 4
Q ss_pred CCCCCCCCC----CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 313 PKDMDSFGL----SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 313 g~~m~~ldl----s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
+. ...+. ...+.++++.|++|.+|.+..++|+++++++.++.+..... .|
T Consensus 203 ~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~------------~~------------ 256 (365)
T 3get_A 203 SK--KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRA------------PF------------ 256 (365)
T ss_dssp GG--GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSC------------TT------------
T ss_pred Cc--ccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcC------------CC------------
Confidence 32 11221 22466899999999998433357999987665544422100 00
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
+++.+...++. ++|+.. ..++.+.+
T Consensus 257 -----------------------------~~~~~~~~~~~------------------------~~l~~~--~~~~~~~~ 281 (365)
T 3get_A 257 -----------------------------NVSNLALKAAV------------------------AAMDDD--EFTEKTLE 281 (365)
T ss_dssp -----------------------------CSCHHHHHHHH------------------------HHHTCH--HHHHHHHH
T ss_pred -----------------------------CcCHHHHHHHH------------------------HHhCCH--HHHHHHHH
Confidence 01111112222 444422 24678889
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
+.+.+.+++.+.|.++ | ++++.+ .+..+.+.+.+. +...+.+.+.++||.++.|..|.
T Consensus 282 ~~~~~~~~l~~~l~~~------g---~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~--- 339 (365)
T 3get_A 282 NNFSQMELYKEFAKKH------N---IKIIDS-----YTNFITYFFDEK-----NSTDLSEKLLKKGIIIRNLKSYG--- 339 (365)
T ss_dssp HHHHHHHHHHHHHHHT------T---CEECCC-----SSSEEEEECSSS-----CHHHHHHHHHTTTEECEECGGGT---
T ss_pred HHHHHHHHHHHHHHhC------C---CEECCC-----CCeEEEEECCCC-----CHHHHHHHHHHCCEEEEECccCC---
Confidence 9999999999999887 3 445433 456677776542 56667666667899998763211
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
.+.||+|++ +.+|++++++.|++++
T Consensus 340 ----------------------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 340 ----------------------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ----------------------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ----------------------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 358999987 8999999999999876
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=225.97 Aligned_cols=171 Identities=11% Similarity=0.045 Sum_probs=133.9
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+.......+++|++|++++|++ .+++++|+|+|+++++.++ +++||+|++. .+|++ ....+...+++.|+++
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~----~~i~~ssGt~Ai~~al~~l-~~~Gd~Vi~~~~~y~~-~~~~~~~~l~~~G~~v 149 (415)
T 2fq6_A 76 YGRRGTLTHFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEP-SQDFCSKILSKLGVTT 149 (415)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTSCHH-HHHHHHHTGGGGTCEE
T ss_pred ccCCCCchHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchH-HHHHHHHHHHHcCcEE
Confidence 33333466789999999999985 2455688899999999998 7899997754 56765 3434444557789999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEeccccCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACALGPKDMDSF 319 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~g~~m~~l 319 (632)
+.++.+ |+++|+++|+++ ++||++.+.+|+||..+|++ |+++|++ +|+++++|+++..|....++
T Consensus 150 ~~v~~~------d~~~le~ai~~~------tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~ 217 (415)
T 2fq6_A 150 SWFDPL------IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL 217 (415)
T ss_dssp EEECTT------CGGGGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG
T ss_pred EEECCC------CHHHHHHhhccC------CcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc
Confidence 998753 567888777653 59999999999999999999 9999999 99999999999866422344
Q ss_pred CCCCCCCcEEEEccccccCCCCCc---eEEEEEeCCCcccc
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPIL 357 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G---~G~L~Vr~~~~~~L 357 (632)
+ +++|++++|+||++| |.| .|+++.+++.++.+
T Consensus 218 ~---~g~Div~~S~sK~lg--~~g~~~~G~l~~~~~~~~~l 253 (415)
T 2fq6_A 218 D---FGIDVSIQAATKYLV--GHSDAMIGTAVCNARCWEQL 253 (415)
T ss_dssp G---GTCSEEEEETTTTTT--CSSSCCCEEEEECTTTHHHH
T ss_pred c---cCCeEEEEeCccccC--CCCCceEEEEEeCHHHHHHH
Confidence 3 588999999999999 555 69999887655433
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=222.11 Aligned_cols=309 Identities=12% Similarity=0.067 Sum_probs=223.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccE--EEeCCHHHHHHHHHhhCCCCCC--------CeEEEec-cccchhhHHHHHHHHh
Q 006746 169 SGLESAMKKRIMDFLNISENDYGM--VFTANRTSAFKLLAESYPFMSV--------KNLLTVY-DYESEAVEAMIRTSEK 237 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~v--vft~naT~al~lv~~sl~~~~g--------d~ilt~~-d~~s~~v~~~~~~a~~ 237 (632)
..+.+++++.+++++|++++...+ +||+|+|+|+.+++.++. .+| |+|++.. .|++ +...++.
T Consensus 138 ~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~-----~~~~~~~ 211 (514)
T 3mad_A 138 AKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAA-----FDKAAQY 211 (514)
T ss_dssp HHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchH-----HHHHHHH
Confidence 466778889999999998521246 999999999999998872 333 7877654 5553 2345567
Q ss_pred cCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC---
Q 006746 238 RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP--- 313 (632)
Q Consensus 238 ~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g--- 313 (632)
.|++++.++.+ +++.+|+++|+++|+++ +++|++++.+|.||...|++ |.++|+++|+++++|+++...
T Consensus 212 ~G~~v~~v~~~-~~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~ 284 (514)
T 3mad_A 212 FGIKLVRTPLD-ADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILP 284 (514)
T ss_dssp HTCEEEEECBC-TTSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHH
T ss_pred cCCeeEEeeeC-CCCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccch
Confidence 79999999998 57889999999999754 58999999999999999999 999999999999999986643
Q ss_pred ------CCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCC
Q 006746 314 ------KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE 387 (632)
Q Consensus 314 ------~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e 387 (632)
....+++....++|++++|+||+++. |.|+|+++++++.+........ ..|....
T Consensus 285 ~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~------- 345 (514)
T 3mad_A 285 WAERLGYPVPPFDFRLEGVTSVSADTHKYGYG-AKGTSVILYRRPDLLHYQYFIA-----------ADWPGGL------- 345 (514)
T ss_dssp HHHHTTCCCCCCSTTSTTCCEEEECTTTTTCC-CSSCEEEEESSHHHHTTTCEEE-----------SSCTTCS-------
T ss_pred hHHhcCCCCCcccccCCCCcEEEECchhccCC-CCCeEEEEEeCHHHhccccccc-----------cccCCCc-------
Confidence 21125677778999999999997443 8899999999876533221100 0110000
Q ss_pred ccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHH
Q 006746 388 PEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMIS 467 (632)
Q Consensus 388 ~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~ 467 (632)
+ .. .. ..|+.+...+.++. .+++.+...|++.+.
T Consensus 346 -------~---~~--~~----------~~gs~~~~~~~a~~------------------------aal~~l~~~~~~~~~ 379 (514)
T 3mad_A 346 -------Y---FS--PT----------FAGSRPGALSATAW------------------------AAMLSLGEEGYLDAT 379 (514)
T ss_dssp -------E---EE--SS----------SCSSCCHHHHHHHH------------------------HHHHHHHHHHHHHHH
T ss_pred -------c---cC--Cc----------cCCCCchHHHHHHH------------------------HHHHHHhHHHHHHHH
Confidence 0 00 00 01222223333343 678877777899999
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChH
Q 006746 468 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 468 ~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~ 547 (632)
++.+.+.+++.+.|.++ |.++++++. .+++.|...+ ++...+.+.+.++||.+ .|.
T Consensus 380 ~~~~~~~~~l~~~L~~~--------~g~~~~~~~-----~~~~~~~~~~-----~~~~~l~~~L~~~Gi~v-~g~----- 435 (514)
T 3mad_A 380 RRILQAADRLKAGVRAI--------PSLKILGDP-----LWVIAVASDE-----LNIYQVMEEMAGRGWRL-NGL----- 435 (514)
T ss_dssp HHHHHHHHHHHHHHHTS--------TTCEESSCC-----SSEEEEECSS-----SCHHHHHHHHHTTTCBC-EEE-----
T ss_pred HHHHHHHHHHHHHHhhC--------CCeEEeCCC-----eEEEEEeCCC-----CCHHHHHHHHHhcCCEe-ccC-----
Confidence 99999999999999987 567887663 4488887644 56667776666779876 221
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccC-CCCCHHHHHHHHHHHHHhhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg-~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+|+++. +.++.+||+++++.|++.++.
T Consensus 436 ---------------------------------~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~ 468 (514)
T 3mad_A 436 ---------------------------------HRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQ 468 (514)
T ss_dssp ---------------------------------TTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred ---------------------------------CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 01247999998 445679999999999998764
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=221.81 Aligned_cols=202 Identities=10% Similarity=0.042 Sum_probs=152.0
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
...+.|+.+....-..+.+++..+. |..+.+.|+.......++.|+++++++|++
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~la~~~g~~- 80 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAARFA------------------------LEESGYIYTRLGNPTTDALEKKLAVLERGE- 80 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHHHC-----------------------------CCSBTTTCCHHHHHHHHHHHHHHTCS-
T ss_pred CcCCCCcCCCccccCCHHHHHHhhc------------------------CCCCCCceeCCCChHHHHHHHHHHHHhCCC-
Confidence 4678999999888877777755211 111222233323467789999999999985
Q ss_pred CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhc
Q 006746 188 NDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
.++++.++|+|+.+++.++ +++||+|++. ..|++ ....+...++..|++++.++.+ ++++|+++|+++
T Consensus 81 ---~~i~~~sG~~a~~~~l~~~-~~~gd~vi~~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~ 149 (398)
T 2rfv_A 81 ---AGLATASGISAITTTLLTL-CQQGDHIVSASAIYGC-THAFLSHSMPKFGINVRFVDAA------KPEEIRAAMRPE 149 (398)
T ss_dssp ---EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCHH-HHHHHHTHHHHTTCEEEEECTT------SHHHHHHHCCTT
T ss_pred ---cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCCccc-HHHHHHHHHHHcCCEEEEeCCC------CHHHHHHhcCCC
Confidence 3566667889999999988 6889997754 56664 3433344457789999988763 788998888653
Q ss_pred CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCc--
Q 006746 267 GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG-- 343 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G-- 343 (632)
+++|++++.+|+||..+|++ |.++|+++|+++++|.++..+..-.++ .+++|+++.|+||++|. |.+
T Consensus 150 ------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~---~~~~di~~~s~sK~~~~-~g~~~ 219 (398)
T 2rfv_A 150 ------TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL---QLGADIVVHSVTKYING-HGDVI 219 (398)
T ss_dssp ------EEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG---GGTCSEEEEETTTTTTC-SSCCC
T ss_pred ------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch---hhCCcEEEEeCcccccC-CCCce
Confidence 58999999999999999999 999999999999999999876521232 35789999999998875 655
Q ss_pred eEEEEEeCCCcc
Q 006746 344 FGCLFVKKSTVP 355 (632)
Q Consensus 344 ~G~L~Vr~~~~~ 355 (632)
.|+++++++.++
T Consensus 220 ~G~~~~~~~~~~ 231 (398)
T 2rfv_A 220 GGIIVGKQEFID 231 (398)
T ss_dssp CEEEEECHHHHH
T ss_pred EEEEEECHHHHH
Confidence 599998876653
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-22 Score=220.37 Aligned_cols=324 Identities=11% Similarity=0.012 Sum_probs=213.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCC-------ccEEEeCCHHHHHHHHHhhCCC------------------CCCCeEEEe-c
Q 006746 168 ESGLESAMKKRIMDFLNISEND-------YGMVFTANRTSAFKLLAESYPF------------------MSVKNLLTV-Y 221 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~e-------y~vvft~naT~al~lv~~sl~~------------------~~gd~ilt~-~ 221 (632)
..++.+++.+.+++++|.+++. ...+||+|+|+|+.+.+..... .+++.|+++ .
T Consensus 111 ~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~ 190 (475)
T 3k40_A 111 CTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQ 190 (475)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCC
Confidence 3578888999999999997531 2589999999997665444310 123456655 4
Q ss_pred cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC
Q 006746 222 DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN 300 (632)
Q Consensus 222 d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~ 300 (632)
.|++ + .+.++..|++++.+|.+ +++ +++++|+++|+++++....+.++++++.++.||...|++ |+++|+++
T Consensus 191 ~H~s--~---~~~~~~~g~~~~~v~~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~ 263 (475)
T 3k40_A 191 AHSS--V---ERAGLLGGVKLRSVQSE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKH 263 (475)
T ss_dssp SCHH--H---HHHHHHHTCEEEEECCB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred chHH--H---HHHHHHcCCceEEEECC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHh
Confidence 5554 2 33455679999999998 677 999999999987542233467899999999999999999 99999999
Q ss_pred CcEEEEeccccCCCCCC-CCC--CCC-CCCcEEEEccccccCCCCCceEEEEEeCCCc-c-cc--CCCCCCCceeecccc
Q 006746 301 DWHILIDACALGPKDMD-SFG--LSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTV-P-IL--VDNTSSGMVSLLPAK 372 (632)
Q Consensus 301 g~~vlvDaaq~~g~~m~-~ld--ls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~-~-~L--~~~~~gG~v~~~~~~ 372 (632)
|++++||+|+.++.-.. ... +.. ..+|++++++||+++. |.|+|++++++... . .+ .+.+..+...
T Consensus 264 ~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~----- 337 (475)
T 3k40_A 264 NLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLV-NFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ----- 337 (475)
T ss_dssp TCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESSGGGC---------------------
T ss_pred CCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCC-CCceEEEEEeCHHHHHHHhcCCccccCCCcC-----
Confidence 99999999987653100 110 111 2569999999997775 99999999998643 1 11 1111110000
Q ss_pred cccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhh
Q 006746 373 KQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIEC 452 (632)
Q Consensus 373 ~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (632)
...+ +.. ...+ +.+. +| ...++-
T Consensus 338 ~~~~--------~~~----~~~~---~~sr-~~-----------------~~l~l~------------------------ 360 (475)
T 3k40_A 338 GSAP--------DYR----HWQI---PLGR-RF-----------------RALKLW------------------------ 360 (475)
T ss_dssp --------------------------CCCG-GG-----------------THHHHH------------------------
T ss_pred CCCC--------Ccc----cccc---cCCC-cc-----------------cHHHHH------------------------
Confidence 0000 000 0000 0000 01 112222
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHH
Q 006746 453 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLAD 532 (632)
Q Consensus 453 ~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~ 532 (632)
.+|..+...|++.+.+|...+++++.+.|.++ |.+++++|. ..++|+|.+.+.+ ....++.+++.+
T Consensus 361 ~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~--------~g~~l~~~~----~~~iv~f~~~~~~--~~~~~l~~~L~~ 426 (475)
T 3k40_A 361 FVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD--------SRFELAAEI----NMGLVCFRLKGSN--ERNEALLKRING 426 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------TTEEESSCC----BTTEEEEEESSCH--HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEecCC----ceEEEEEEeCCch--HHHHHHHHHHHh
Confidence 66777777789999999999999999999997 779998763 5789999987521 122334444544
Q ss_pred hCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccC-CCCCHHHHHHHHHHHHHhhh
Q 006746 533 RENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 533 ~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg-~~~t~eDV~rlv~~l~~~l~ 611 (632)
+..+.+..+ ...+...+|+++. +.+|.+||+++++.|+++++
T Consensus 427 ~g~~~~~~~-------------------------------------~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 469 (475)
T 3k40_A 427 RGHIHLVPA-------------------------------------KIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAAD 469 (475)
T ss_dssp HTSCBCEEE-------------------------------------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEee-------------------------------------EECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 433322211 0113469999964 67799999999999999875
Q ss_pred h
Q 006746 612 A 612 (632)
Q Consensus 612 ~ 612 (632)
.
T Consensus 470 ~ 470 (475)
T 3k40_A 470 E 470 (475)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=210.17 Aligned_cols=172 Identities=15% Similarity=0.139 Sum_probs=136.5
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+........+.|++|+++++++ ..|+|+ |+|+|+.+++.++ +++||+|++. ..|++ ....+...++..|+++
T Consensus 46 ~~~~~~~~~~~l~~~la~~~~~~---~~i~~~-sGt~a~~~~~~~~-~~~g~~vl~~~~~~~~-~~~~~~~~~~~~g~~~ 119 (386)
T 1cs1_A 46 YSRRGNPTRDVVQRALAELEGGA---GAVLTN-TGMSAIHLVTTVF-LKPGDLLVAPHDCYGG-SYRLFDSLAKRGCYRV 119 (386)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEES-SHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHHHHHHHTTTSCEE
T ss_pred eeCCCCccHHHHHHHHHHHhCCC---cEEEeC-CHHHHHHHHHHHH-hCCCCEEEEecCCcHh-HHHHHHHHHHhcCCEE
Confidence 44434567789999999999986 256665 5599999999998 7889997654 56665 4555555667889999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
..++.+ |.++|+++|+++ +++|++++.+|+||...|++ |.++|+++|+++++|.++..+.. ...+
T Consensus 120 ~~~~~~------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~--~~~~ 185 (386)
T 1cs1_A 120 LFVDQG------DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL--QNPL 185 (386)
T ss_dssp EEECTT------CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT--CCGG
T ss_pred EEeCCC------CHHHHHHhhccC------CcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc--CCcc
Confidence 988763 789999999864 48999999999999999999 99999999999999999988752 2223
Q ss_pred CCCCCcEEEEccccccCCCCCce--EEEEEeC-CCcccc
Q 006746 322 SLVRPDFLICSFYQIFGENPSGF--GCLFVKK-STVPIL 357 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~--G~L~Vr~-~~~~~L 357 (632)
.+++|+++.|+||++|. |.+. |++++++ +.++.+
T Consensus 186 -~~~~di~~~s~sK~~~~-~~~~~~G~~~~~~~~l~~~l 222 (386)
T 1cs1_A 186 -ALGADLVLHSCTKYLNG-HSDVVAGVVIAKDPDVVTEL 222 (386)
T ss_dssp -GGTCSEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHH
T ss_pred -ccCceEEEEcCcccccC-CCCceeEEEEeCcHHHHHHH
Confidence 36899999999998875 6664 9999987 554444
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-24 Score=228.83 Aligned_cols=168 Identities=11% Similarity=0.114 Sum_probs=131.3
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCE
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~ 241 (632)
.|+......++++|++|++++|++ ..|+| .|+|+|+++++. + +++||+|++. ..|++ ...++...++..|++
T Consensus 48 ~~~~~~~~~~~~lr~~la~~~g~~---~~i~~-~sGt~a~~~al~-~-~~~gd~Vi~~~~~y~~-~~~~~~~~~~~~G~~ 120 (393)
T 1n8p_A 48 EYSRSQNPNRENLERAVAALENAQ---YGLAF-SSGSATTATILQ-S-LPQGSHAVSIGDVYGG-THRYFTKVANAHGVE 120 (393)
T ss_dssp CBTTTCCHHHHHHHHHHHHHTTCS---EEEEE-SCHHHHHHHHHH-T-SCSSCEEEEESSCCHH-HHHHHHHTSTTTCSC
T ss_pred ceecCCChhHHHHHHHHHHHhCCC---cEEEE-CChHHHHHHHHH-H-cCCCCEEEEeCCCchH-HHHHHHHHHHHcCcE
Confidence 355545577889999999999986 24555 556999999999 6 6899997755 45554 454544456778999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC----CcEEEEeccccCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN----DWHILIDACALGPKDM 316 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~----g~~vlvDaaq~~g~~m 316 (632)
++.++.+ | ++|+++|+++ +++|++++.+|+||..+|++ |.++|+++ |+++++|++|..+..
T Consensus 121 v~~v~~~------d-~~l~~~i~~~------t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~- 186 (393)
T 1n8p_A 121 TSFTNDL------L-NDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI- 186 (393)
T ss_dssp CEEESSH------H-HHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-
T ss_pred EEEeCCC------h-HHHHHhcccC------ceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCcccccc-
Confidence 9998764 5 7888877643 59999999999999999999 99999999 999999999987651
Q ss_pred CCCCCCCCCCcEEEEccccccCCCCCc--e-EEEEEe-CCCcc
Q 006746 317 DSFGLSLVRPDFLICSFYQIFGENPSG--F-GCLFVK-KSTVP 355 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~~G~~P~G--~-G~L~Vr-~~~~~ 355 (632)
.+...+++|+++.|+||++| |.| + |+++++ ++.++
T Consensus 187 --~~~~~~~~di~~~S~sK~~g--~~G~rigG~~~~~~~~~~~ 225 (393)
T 1n8p_A 187 --SNPLNFGADIVVHSATKYIN--GHSDVVLGVLATNNKPLYE 225 (393)
T ss_dssp --CCGGGGTCSEEEEETTTTTT--CSSCCCCEEEEESCHHHHH
T ss_pred --CCHHHcCCeEEEEECccccc--CCCCceeEEEEeCCHHHHH
Confidence 13334589999999999999 778 7 888876 34443
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=207.92 Aligned_cols=287 Identities=9% Similarity=0.065 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHcCC-CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 172 ESAMKKRIMDFLNI-SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 172 ~~~~R~~ia~~l~a-~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
..+.|+++++++|+ +++ .|+||+|+|+|+++++.++ +++||+|++ ...|++ .. ..++..|++++.++++
T Consensus 69 ~~~l~~~la~~~g~~~~~--~i~~~~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~~----~~~~~~g~~~~~v~~~- 139 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGM--EVLLGNGSDEIISMLALAA-ARPGAKVMAPVPGFVM-YA----MSAQFAGLEFVGVPLR- 139 (367)
T ss_dssp HHHHHHHHHHHHTCCTTC--EEEEEEHHHHHHHHHHHHT-CCTTCEEEEEESCSCC-SC----HHHHTTTCEEEEEECC-
T ss_pred HHHHHHHHHHHhCCCCcc--eEEEcCCHHHHHHHHHHHH-cCCCCEEEEcCCCHHH-HH----HHHHHcCCeEEEecCC-
Confidence 35899999999999 443 7999999999999999999 789999765 446654 22 2356789999999998
Q ss_pred CccccCHHHHHHHHHh-cCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhC--CcEEEEeccccCC--CCCCCCC
Q 006746 250 PRLRINSEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQEN--DWHILIDACALGP--KDMDSFG 320 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~-~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~--g~~vlvDaaq~~g--~~m~~ld 320 (632)
+++.+|+++|++++++ + ++++++++.+|+||..+|. + |+++|+++ |+++++|.++..- .. ..-.
T Consensus 140 ~~~~~d~~~l~~~l~~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~ 212 (367)
T 3euc_A 140 ADFTLDRGAMLAAMAEHQ------PAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSR 212 (367)
T ss_dssp TTSCCCHHHHHHHHHHHC------CSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGG
T ss_pred CCCCCCHHHHHHHhhccC------CCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHH
Confidence 5778999999999987 4 4899999999999999864 4 56778999 9999999987631 11 0112
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
+...+.++++.|++|. |.+..++|+++++++.++.+..... .|
T Consensus 213 ~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~------------~~------------------------ 255 (367)
T 3euc_A 213 LTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRP------------PY------------------------ 255 (367)
T ss_dssp GGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCC------------SS------------------------
T ss_pred HhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCC------------CC------------------------
Confidence 3345667999999998 7433457888887666544432110 00
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
+.+.+...++. .+|+. ...++.+.++.+.+.++|.+.
T Consensus 256 -----------------~~~~~~~~a~~------------------------~~l~~--~~~~~~~~~~~~~~~~~l~~~ 292 (367)
T 3euc_A 256 -----------------NVNVLTEATAL------------------------FALEH--VAVLDEQAAQLRAERSRVAEG 292 (367)
T ss_dssp -----------------CCCHHHHHHHH------------------------HHHTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHH------------------------HHhcC--HHHHHHHHHHHHHHHHHHHHH
Confidence 00111112221 44444 123678889999999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
|.++ |.++++.+ .+..+.+.+. +...+.+.+.++||.++.|..|..
T Consensus 293 l~~~--------~g~~~~~~-----~~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~~~~~-------------- 338 (367)
T 3euc_A 293 MAAH--------GGVTVFPS-----AANFLLARVP-------DAAQTFDRLLARKVLIKNVSKMHP-------------- 338 (367)
T ss_dssp HHTS--------TTCEECCC-----SSSEEEEECS-------CHHHHHHHHHTTTEECEECGGGCG--------------
T ss_pred HHhC--------CCcEECCC-----CCeEEEEECC-------CHHHHHHHHHHCCeEEEECCccCC--------------
Confidence 9886 55665432 4566666654 455666667788999998755431
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+.||+|++ |.+|++++++.|+++++
T Consensus 339 --------------------~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 339 --------------------LLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp --------------------GGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred --------------------CCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 12469999977 99999999999998864
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-22 Score=211.76 Aligned_cols=342 Identities=12% Similarity=0.076 Sum_probs=228.3
Q ss_pred CceEeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc
Q 006746 108 NHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (632)
Q Consensus 108 ~~vyLD~ag~gl~----~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l 183 (632)
+.-|+|.++..++ ++.+.+++.+.+..... ....+...+| ..+..++.|+.+++++
T Consensus 42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~------------------~~~~~~~~~g--~~~~~~~l~~~la~~~ 101 (399)
T 3tqx_A 42 EKEVLNFCANNYLGLADHPALIKTAQTVVEQYGF------------------GMASVRFICG--TQTIHKELEKDISEFL 101 (399)
T ss_dssp TEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCS------------------CCCSCCCCCC--CBHHHHHHHHHHHHHH
T ss_pred CeeEEEeeccCcccccCCHHHHHHHHHHHHHhCC------------------CCCCcCcccc--CchHHHHHHHHHHHHH
Confidence 4568898887643 46777776543321100 1111122222 2366789999999999
Q ss_pred CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 184 NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 184 ~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
|++ ..+++.|+|+|+.+++.++ +++||+|++..-.|. .+...++..|++++.++. +++++|++++
T Consensus 102 ~~~----~~i~~~sGt~a~~~~l~~~-~~~gd~v~~~~~~~~----~~~~~~~~~g~~~~~~~~------~d~~~l~~~l 166 (399)
T 3tqx_A 102 GTD----DTILYSSCFDANGGLFETL-LGPEDAIISDELNHA----SIIDGIRLCKAQRYRYKN------NAMGDLEAKL 166 (399)
T ss_dssp TCS----EEEEESCHHHHHHTTHHHH-CCTTCEEEEETTCCH----HHHHHHHSCCSEEEEECT------TCTTHHHHHH
T ss_pred CCC----cEEEECchHHHHHHHHHHh-cCCCCEEEECCcccH----HHHHHHHHcCCceeEeCC------CCHHHHHHHH
Confidence 985 2444556788999988888 789999876653333 123345678999988875 3567888888
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC-----CCCCC--CCCcEEEEcccc
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS-----FGLSL--VRPDFLICSFYQ 335 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~-----ldls~--~~~Df~~~S~hK 335 (632)
++......+++++++++.+|+||..+|++ |.++|+++|+++++|.++..+.. .. ++... .++|+++.|+||
T Consensus 167 ~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~di~~~s~sK 245 (399)
T 3tqx_A 167 KEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFI-GENGRGTPEYCGVADRVDILTGTLGK 245 (399)
T ss_dssp HHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS-STTSCCHHHHHTCTTCCSEEEEESSS
T ss_pred HhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccccc-CCCCCchHHhhCCCCCCcEEEecchH
Confidence 76321112469999999999999999999 99999999999999999865431 11 11111 267999999999
Q ss_pred ccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhh
Q 006746 336 IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415 (632)
Q Consensus 336 ~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~ 415 (632)
++|. |.| |+++.+++.++.+.... . .|. .
T Consensus 246 ~~~g-~~g-G~~~~~~~~~~~~~~~~-----------~-~~~---------------------~---------------- 274 (399)
T 3tqx_A 246 ALGG-ASG-GYTSGHKEIIEWLRNRS-----------R-PYL---------------------F---------------- 274 (399)
T ss_dssp SSCS-SCC-EEEEECHHHHHHHHHHC-----------H-HHH---------------------S----------------
T ss_pred hccc-Cce-EEEEcCHHHHHHHHHhC-----------c-cee---------------------c----------------
Confidence 8873 667 99998887655443210 0 000 0
Q ss_pred cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE
Q 006746 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV 495 (632)
Q Consensus 416 ~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v 495 (632)
.++.+...+.++. .+++... .+++.+.++.+.+.+++.+.|.++ |.+
T Consensus 275 ~~~~~~~~~~~~~------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~------g~~-- 321 (399)
T 3tqx_A 275 SNTVAPVIVATSL------------------------KVLELLK-TEGPQLRKQLQENSRYFRAGMEKL------GFQ-- 321 (399)
T ss_dssp SCCCCHHHHHHHH------------------------HHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH------TCC--
T ss_pred cCCCcHHHHHHHH------------------------HHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc------CCC--
Confidence 0111222222232 5666664 468999999999999999999988 433
Q ss_pred EEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccc
Q 006746 496 KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 575 (632)
Q Consensus 496 ~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 575 (632)
++. ..++++.+.+.+. .+...+.+.+.++||.++.+.+..
T Consensus 322 -~~~-----~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~~------------------------------ 361 (399)
T 3tqx_A 322 -LVP-----GNHPIIPVMLGDA----QLATNMADHLLQEGIYVVGFSYPV------------------------------ 361 (399)
T ss_dssp -BCC-----CSSSEEEEEEECH----HHHHHHHHHHHHTTEECCEECTTT------------------------------
T ss_pred -cCC-----CCCCEEEEEeCCH----HHHHHHHHHHHHCCCEEeeeCCCC------------------------------
Confidence 222 3577888877641 234455555555799998543211
Q ss_pred cccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 576 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 576 ~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.+.||+|+++++|.+||+++++.|+++++.
T Consensus 362 ---~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 362 ---VPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp ---SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 0123469999999999999999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=208.34 Aligned_cols=307 Identities=13% Similarity=0.054 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.++.+++++.+++.+|.+.+...|+||+|+|+|+.+++.++ +++||+|++.. .|++ ....++..|++++.++.
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~-----~~~~~~~~g~~~~~~~~ 138 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-TSPGDQILVQEPVYNM-----FYSVIEGNGRRVISSDL 138 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH-SCTTCEEEECSSCCHH-----HHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh-CCCCCeEEECCCCcHH-----HHHHHHHcCCEEEEeee
Confidence 46677888888888884322338999999999999999998 78999987654 5553 23456778999999988
Q ss_pred cC--CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc---chH-HHHHHhhCCcEEEEeccccCCCC--CCCC
Q 006746 248 SW--PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY---PYL-WMRIAQENDWHILIDACALGPKD--MDSF 319 (632)
Q Consensus 248 ~~--~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~---pl~-i~~~a~~~g~~vlvDaaq~~g~~--m~~l 319 (632)
++ .+..+++++|+++|++. +++++++++.+|+||..+ +++ |+++|+++|+++++|.++..... ....
T Consensus 139 ~~~~~~~~~d~~~l~~~l~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 213 (391)
T 3dzz_A 139 IYENSKYSVNWADLEEKLATP-----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDIT 213 (391)
T ss_dssp EEETTEEECCHHHHHHHHTST-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred eecCCceeecHHHHHHHHhcc-----CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCce
Confidence 52 33348999999999731 368999999999999995 566 78889999999999999874210 0123
Q ss_pred CCCCCC---Cc--EEEEccccccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 320 GLSLVR---PD--FLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 320 dls~~~---~D--f~~~S~hK~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
.+..+. +| +++.|+||.+|.+..++|+++++ ++.++.+.....
T Consensus 214 ~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~------------------------------- 262 (391)
T 3dzz_A 214 PAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFF------------------------------- 262 (391)
T ss_dssp CGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHH-------------------------------
T ss_pred ehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHH-------------------------------
Confidence 333333 67 99999999888423358998887 544433321100
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
..+ ..+++.+...++. .+|+... ..++.+.++.+.+
T Consensus 263 -----~~~--------------~~~~~~~~~~a~~------------------------~~l~~~~-~~~~~~~~~~~~~ 298 (391)
T 3dzz_A 263 -----LAG--------------IGEPNLLAIPAAI------------------------AAYEEGH-DWLRELKQVLRDN 298 (391)
T ss_dssp -----HHT--------------CSSCCTTHHHHHH------------------------HHHHHCH-HHHHHHHHHHHHH
T ss_pred -----hhc--------------cCCCCHHHHHHHH------------------------HHHhccH-HHHHHHHHHHHHH
Confidence 000 0011222222222 4554422 2368888999999
Q ss_pred HHHHHHHHHc-cCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHH-HhCCcEEccCccCChHHHhH
Q 006746 474 INWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLA-DRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 474 ~~~L~~~L~~-l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla-~~~gI~lr~G~~c~~~~~~~ 551 (632)
.+++.+.|.+ + |.++++.|. .+..+.+.+... | ++...+.+.+ +++||.++.|..|..
T Consensus 299 ~~~l~~~l~~~~--------~~~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~----- 358 (391)
T 3dzz_A 299 FAYAREFLAKEV--------PEVKVLDSN----ASYLAWVDISAL-G--MNAEDFCKYLREKTGLIISAGNGYRG----- 358 (391)
T ss_dssp HHHHHHHHHHHC--------TTSEECCCC----BSSEEEEECGGG-C--SCHHHHHHHHHHHHCEECEESGGGCT-----
T ss_pred HHHHHHHHHhhC--------CCcEEeccC----ceEEEEEehhhc-C--CCHHHHHHHHHHhCCEEEeCchhhCC-----
Confidence 9999999998 5 567777653 233444555531 1 4556665544 688999998855442
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||+|++ ++.+||+++++.|+++++.
T Consensus 359 -----------------------------~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 359 -----------------------------NGHEFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp -----------------------------TGGGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred -----------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 12469999999 7999999999999998753
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=210.36 Aligned_cols=298 Identities=11% Similarity=0.106 Sum_probs=209.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.+..+++++.+++++|++ .++||+|+|+|+.+++.++ .++||+|++..-.|. .+ ...++..|++++.++.
T Consensus 87 ~~~~~~l~~~la~~~g~~----~v~~~~ggt~a~~~~~~~~-~~~gd~V~~~~p~~~-~~---~~~~~~~g~~~~~v~~- 156 (398)
T 3a2b_A 87 LDIHVELEEKLSAYVGKE----AAILFSTGFQSNLGPLSCL-MGRNDYILLDERDHA-SI---IDGSRLSFSKVIKYGH- 156 (398)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHS-SCTTCEEEEETTCCH-HH---HHHHHHSSSEEEEECT-
T ss_pred cHHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEECCccCH-HH---HHHHHHcCCceEEeCC-
Confidence 367789999999999973 6999999999999999999 789999876653333 12 3345678999988875
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-CCCCCCC-CCC-
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK-DMDSFGL-SLV- 324 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~-~m~~ldl-s~~- 324 (632)
+|.++|++++++.. ..+++++++++.+|+||...|++ |.++|+++|+++++|.++..+. +-...++ +.+
T Consensus 157 -----~d~~~l~~~l~~~~--~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 229 (398)
T 3a2b_A 157 -----NNMEDLRAKLSRLP--EDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFG 229 (398)
T ss_dssp -----TCHHHHHHHHHTSC--SSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHT
T ss_pred -----CCHHHHHHHHHhhc--cCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcC
Confidence 57899999998632 11468999999999999999999 9999999999999999987542 1001222 111
Q ss_pred ---CCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 325 ---RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 325 ---~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
++|+++.|++|++| |.| |+++++++.++.+..... .|. ..+
T Consensus 230 ~~~~~di~~~s~sK~~~--~~G-G~~~~~~~~~~~l~~~~~------------~~~---------------------~~~ 273 (398)
T 3a2b_A 230 LNDDVDLIMGTFSKSLA--SLG-GFVAGDADVIDFLKHNAR------------SVM---------------------FSA 273 (398)
T ss_dssp CGGGCSEEEEESSSTTC--SSC-EEEEECHHHHHHHHHHCH------------HHH---------------------SSB
T ss_pred CCcCCeEEEeccccccc--CCC-cEEEeCHHHHHHHHHhcc------------cce---------------------ecC
Confidence 47999999999999 778 999998776554432100 000 000
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
+ ++.....++. .+|+..+. ++.+.++.+.+.+++.+.|
T Consensus 274 ~----------------~~~~~~a~~~------------------------~~l~~~~~--~~~~~~~~~~~~~~l~~~L 311 (398)
T 3a2b_A 274 S----------------MTPASVASTL------------------------KALEIIQN--EPEHIEKLWKNTDYAKAQL 311 (398)
T ss_dssp C----------------CCHHHHHHHH------------------------HHHHHHHH--CTHHHHHHHHHHHHHHHHH
T ss_pred C----------------CCHHHHHHHH------------------------HHHHHHhh--CHHHHHHHHHHHHHHHHHH
Confidence 0 0111111111 56665432 4677888999999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE 561 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~ 561 (632)
.++ |.+ ++.| .+.++.+.+.+ + ++...+.+.+.++||.++.|..|..
T Consensus 312 ~~~------g~~---~~~~-----~g~~~~~~~~~--~--~~~~~l~~~l~~~gi~v~~~~~~~~--------------- 358 (398)
T 3a2b_A 312 LDH------GFD---LGAT-----ESPILPIFIRS--N--EKTFWVTKMLQDDGVFVNPVVSPAV--------------- 358 (398)
T ss_dssp HHT------TCC---BCSC-----CSSEEEEECCC--H--HHHHHHHHHHHHTTEECEEECTTTS---------------
T ss_pred Hhc------CCC---cCCC-----CCCEEEEEcCC--H--HHHHHHHHHHHHCCcEEEeeCCCCC---------------
Confidence 987 433 3333 36777777643 1 3344555444455999987754431
Q ss_pred hhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 562 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.+.||+|++.+++.+|++++++.|+++++.
T Consensus 359 ------------------~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 359 ------------------PAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp ------------------CGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 012468999999999999999999999998753
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=217.20 Aligned_cols=360 Identities=11% Similarity=0.075 Sum_probs=231.0
Q ss_pred CCCCCCchhHHHHHHhhccCcCC-----CCceEeecC---CCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccc
Q 006746 84 YPQYFDTYQIDQIRAKEYYQLSL-----SNHTCLDYF---GIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYK 154 (632)
Q Consensus 84 ~p~y~~~~~~d~iR~~ef~~L~~-----~~~vyLD~a---g~gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~ 154 (632)
...|.....++.+|+ +||.+.. ++.-|+||. ..++ .++.+++++.+.+....
T Consensus 17 ~~~~~~~~~~~~~~~-~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~------------------ 77 (401)
T 2bwn_A 17 EGRYRTFIDIEREKG-AFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVG------------------ 77 (401)
T ss_dssp TTCCCCCCEEEECTT-STTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHC------------------
T ss_pred cCCceehhhhhcccc-cccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcC------------------
Confidence 334554445566776 6998841 123344444 3332 34568888765443210
Q ss_pred cccccc-ccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEEEec-cccchhhHHH
Q 006746 155 TGNLKT-QLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-PFMSVKNLLTVY-DYESEAVEAM 231 (632)
Q Consensus 155 ~~n~~s-~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~gd~ilt~~-d~~s~~v~~~ 231 (632)
.|++. ...|+ ..+.+++.|++|++++|++ ..|+||+|++ ++..+...+ .+.+||+|++.. .|++ ..
T Consensus 78 -~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~---~~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~-~~--- 146 (401)
T 2bwn_A 78 -AGSGGTRNISG--TTAYHRRLEAEIAGLHQKE---AALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHAS-MI--- 146 (401)
T ss_dssp -SCCCSBTTTBC--CBHHHHHHHHHHHHHTTCS---EEEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHH-HH---
T ss_pred -CCCCCcCcccC--ChHHHHHHHHHHHHHhCCC---cEEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHH-HH---
Confidence 11111 11122 2356789999999999974 3688877766 555554443 235799977654 6654 22
Q ss_pred HHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccc
Q 006746 232 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACA 310 (632)
Q Consensus 232 ~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq 310 (632)
..++..|++++.++.+ +.+++++++.... ..++++|++++.+|+||..+|++ |.++|+++|+++++|.++
T Consensus 147 -~~~~~~g~~~~~v~~~------d~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~ 217 (401)
T 2bwn_A 147 -EGIKRNAGPKRIFRHN------DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVH 217 (401)
T ss_dssp -HHHHHSCCCEEEECTT------CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTT
T ss_pred -HHHHHcCCeEEEEcCC------CHHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccc
Confidence 2345689999988864 6788988887421 12468999999999999999999 999999999999999999
Q ss_pred cCCCCCCC--------CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccC
Q 006746 311 LGPKDMDS--------FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 311 ~~g~~m~~--------ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
..|. ..+ .++. .++|+++.|+.|.||. .| |+++.+++.++.+... ...|
T Consensus 218 ~~g~-~~~~g~~~~~~~~~~-~~~~i~~~s~sK~~~~--~G-G~~~~~~~~~~~l~~~------------~~~~------ 274 (401)
T 2bwn_A 218 AVGM-YGPRGAGVAERDGLM-HRIDIFNGTLAKAYGV--FG-GYIAASARMVDAVRSY------------APGF------ 274 (401)
T ss_dssp TTTT-SSTTSCCHHHHHTCG-GGCSEEEEESSSTTCS--CC-EEEEECHHHHHHHHHH------------CHHH------
T ss_pred cccc-cCCCCceeeeccCcc-ccCcEEEeechhhccC--CC-CEEecCHHHHHHHHHh------------CcCc------
Confidence 8542 011 1110 1469999999999994 36 8777765443322110 0000
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
. +..+ +++ ..+.++. ++|+++...|
T Consensus 275 -----------~---~~~~----------------~~~-~~~~a~~------------------------~al~~~~~~~ 299 (401)
T 2bwn_A 275 -----------I---FSTS----------------LPP-AIAAGAQ------------------------ASIAFLKTAE 299 (401)
T ss_dssp -----------H---TSBC----------------CCH-HHHHHHH------------------------HHHHHHTSHH
T ss_pred -----------e---ecCC----------------CCH-HHHHHHH------------------------HHHHHHHhcc
Confidence 0 0111 111 2223333 7888887778
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccC
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYG 541 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G 541 (632)
++.+.++.+.+.+++.+.|.++ |. ++++| +++++.|.+.+ + ++...+.+ |++++||.++.|
T Consensus 300 ~~~~~~~~~~~~~~l~~~L~~~------g~---~~~~~-----~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~~ 361 (401)
T 2bwn_A 300 GQKLRDAQQMHAKVLKMRLKAL------GM---PIIDH-----GSHIVPVVIGD--P--VHTKAVSDMLLSDYGVYVQPI 361 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------TC---CBCCC-----SSSCEEEECCC--H--HHHHHHHHHHHHHHCEECCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHC------CC---cccCC-----CCCeEEEEeCC--h--HHHHHHHHHHHhcCCEEEeec
Confidence 8999999999999999999987 32 34443 35688888753 1 34455554 446789998754
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.. ++ ...+.+.||+|++.++|.+||+++++.|+++++
T Consensus 362 ~~--~~-------------------------------~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 362 NF--PT-------------------------------VPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp CT--TT-------------------------------SCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred CC--CC-------------------------------CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 21 00 011235899999999999999999999998864
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=215.04 Aligned_cols=324 Identities=11% Similarity=0.032 Sum_probs=214.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCC-------CccEEEeCCHHHHHHHHHhhCCC--CC------CC--------e--EEEe-c
Q 006746 168 ESGLESAMKKRIMDFLNISEN-------DYGMVFTANRTSAFKLLAESYPF--MS------VK--------N--LLTV-Y 221 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~-------ey~vvft~naT~al~lv~~sl~~--~~------gd--------~--ilt~-~ 221 (632)
...+.+++++.+++++|++++ ...++||+|+|+|+.+++.+... .+ || + |+++ .
T Consensus 111 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~ 190 (486)
T 1js3_A 111 CTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQ 190 (486)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCC
Confidence 357778899999999999852 13589999999998887755411 01 32 4 4444 4
Q ss_pred cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC
Q 006746 222 DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN 300 (632)
Q Consensus 222 d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~ 300 (632)
.|++ + ...++..|++++.+|++ +++.+|+++|+++|+++++....+.+|++++.+|.||...|++ |+++|+++
T Consensus 191 ~h~s--~---~~~~~~~G~~v~~v~~d-~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~ 264 (486)
T 1js3_A 191 AHSS--V---ERAGLIGGVKLKAIPSD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE 264 (486)
T ss_dssp CCHH--H---HHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred CcHH--H---HHHHHhCCCceEEeecC-CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHc
Confidence 5653 2 34566779999999997 6889999999999987652222345899999999999999999 99999999
Q ss_pred CcEEEEeccccCCCCCCCC-CC-----CCCCCcEEEEccccccCCCCCceEEEEEeCCC--ccccC--CCCCC-Cceeec
Q 006746 301 DWHILIDACALGPKDMDSF-GL-----SLVRPDFLICSFYQIFGENPSGFGCLFVKKST--VPILV--DNTSS-GMVSLL 369 (632)
Q Consensus 301 g~~vlvDaaq~~g~~m~~l-dl-----s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~--~~~L~--~~~~g-G~v~~~ 369 (632)
|++++||+|+.++.- .. +. ...++|++++++||+++. |.|+|+++++++. .+.+. +.+.. +...
T Consensus 265 ~~~lhvD~a~g~~~~--~~~~~~~~~~g~~~adsi~~~~hK~~~~-p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~-- 339 (486)
T 1js3_A 265 DIWLHVDAAYAGSAF--ICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQG-- 339 (486)
T ss_dssp TCEEEEECTTGGGGG--GSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCHHHHHGGGC--------------
T ss_pred CCEEEEehhhHHHHH--HCHHHHHHhcCccccCeeEEchhhhcCC-CcceEEEEEeCHHHHHHHhcCCchhhCCCccc--
Confidence 999999999876431 11 11 113689999999998886 8899999998763 23332 22211 1100
Q ss_pred ccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCch
Q 006746 370 PAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSE 449 (632)
Q Consensus 370 ~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 449 (632)
....+ .+. .-+.... ... ...++.
T Consensus 340 --~~~~~-----------------~~~---~~~~~~~------------rr~-~~~~~~--------------------- 363 (486)
T 1js3_A 340 --SGLIT-----------------DYR---HWQLPLG------------RRF-RSLKMW--------------------- 363 (486)
T ss_dssp --CCSCC-----------------CGG---GSSSCSC------------CCC-THHHHH---------------------
T ss_pred --ccCCC-----------------Ccc---ccCCCCC------------Cch-hHHHHH---------------------
Confidence 00000 000 0000000 000 011222
Q ss_pred hhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHH
Q 006746 450 IECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQK 529 (632)
Q Consensus 450 ~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~k 529 (632)
.++..+...|++.+.++...+++++.+.|.++ |.++++++. ..++++|.+.+.+ .+...+.++
T Consensus 364 ---~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~--------~~~~~~~~~----~~~~v~f~~~~~~--~~~~~l~~~ 426 (486)
T 1js3_A 364 ---FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD--------PRFEVCAEV----TLGLVCFRLKGSD--GLNEALLER 426 (486)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------TTEEECSCC----CSSEEEEEESSCH--HHHHHHHHH
T ss_pred ---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--------CCeEEeCCC----ceeEEEEEecChH--HHHHHHHHH
Confidence 56665555688899999999999999999987 779998752 4789999886421 123333344
Q ss_pred HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEcc-CCCCCHHHHHHHHHHHHH
Q 006746 530 LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 530 la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSl-g~~~t~eDV~rlv~~l~~ 608 (632)
|.+ .|+.+..+. ...+.+++|+|+ +.++|.+||+++++.|++
T Consensus 427 L~~-~g~~~~~~~------------------------------------~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 469 (486)
T 1js3_A 427 INS-ARKIHLVPC------------------------------------RLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (486)
T ss_dssp HHH-HTSCBCEEE------------------------------------EETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHh-cCCEEEEEE------------------------------------EECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 443 454322110 001246999996 788999999999999999
Q ss_pred hhhh
Q 006746 609 FLDA 612 (632)
Q Consensus 609 ~l~~ 612 (632)
+++.
T Consensus 470 ~~~~ 473 (486)
T 1js3_A 470 LAAE 473 (486)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-22 Score=210.74 Aligned_cols=337 Identities=11% Similarity=0.014 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
....+.|+.+++++|++ .+++|+|+|+|+.+++.++.+++||+|++. ..|++ . ...++..|++++.++++
T Consensus 39 ~~~~~l~~~la~~~~~~----~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~~ 109 (393)
T 1mdo_A 39 PKNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVS-T----LNMIVLLGANPVMVDVD 109 (393)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH-H----HHHHHHTTCEEEEECBC
T ss_pred hHHHHHHHHHHHHhCCC----cEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHh-H----HHHHHHCCCEEEEEecc
Confidence 45678999999999985 589999999999999999977899997654 56664 2 23456789999999987
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC-C
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR-P 326 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~-~ 326 (632)
+.++.+++++|+++|+++ +++|+++ ++||...|++ |.++|+++|+++++|+++..|.. . +...++ +
T Consensus 110 ~~~~~~d~~~l~~~l~~~------~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~--~-~~~~~~~~ 177 (393)
T 1mdo_A 110 RDTLMVTPEHIEAAITPQ------TKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTS--Y-KGRHIGAR 177 (393)
T ss_dssp TTTCCBCHHHHHHHCCTT------EEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE--E-TTEETTSS
T ss_pred CCcCCCCHHHHHHhcCCC------ceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCe--E-CCeecCCC
Confidence 444679999999988653 4777765 4799999999 99999999999999999987641 1 112234 8
Q ss_pred cEEEEccc--cccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcccc
Q 006746 327 DFLICSFY--QIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 403 (632)
Q Consensus 327 Df~~~S~h--K~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~ 403 (632)
|++++|+| |+++ |...|+++.+ ++.++.+.+...+|... .....++... +..+ +.++
T Consensus 178 d~~~~S~~k~K~l~--~~~~g~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~------------~~~~---~~~~- 237 (393)
T 1mdo_A 178 GTAIFSFHAIKNIT--CAEGGIVVTDNPQFADKLRSLKFHGLGV--DAWDRQSGGR------------APQA---EVLA- 237 (393)
T ss_dssp SEEEEECCTTSSSC--SSSCEEEEESCHHHHHHHHHHTBTTEEC--C-----------------------CC---EESS-
T ss_pred CeEEEeCCCCCccc--cccceEEEeCCHHHHHHHHHHHhcCCcc--cchhhhcccc------------cccc---cccc-
Confidence 99999999 8777 4356777775 45655554422222210 0000000000 0000 0011
Q ss_pred CCCccchhhhhhcCC-cccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 006746 404 TFSGPMSIEMRQSGK-LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 404 ~f~~~~~~~~~~~Gt-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
.|+ ..++.+.+. .++..+ .+++.+.++.+.+.++|.+.|.
T Consensus 238 ------------~g~~~~~~~~~~a-------------------------~~~~~l--~~~~~~~~~~~~~~~~l~~~L~ 278 (393)
T 1mdo_A 238 ------------PGYKYNLPDLNAA-------------------------IALAQL--QKLDALNARRAAIAAQYHQAMA 278 (393)
T ss_dssp ------------CCCBCCCCHHHHH-------------------------HHHHHH--HTHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------cCccCCCCHHHHH-------------------------HHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 111 111111111 223333 2578888899999999999999
Q ss_pred ccCCCCCCCCCcEEEECCCCCC--CCCcEEEEEEccC-CCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 483 KLQHPNTEGNALVKIYGPKIRF--DRGPALAFNVFDW-KREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~~--~rg~ivaFnv~~~-~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
++ + ++++++.... ..+.++.+.+.+. .| ++...+.+.+.++||.++.|..|.... .+... +
T Consensus 279 ~~--------~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~l~~~gi~v~~~~~~~~~~--~~~~~-~-- 342 (393)
T 1mdo_A 279 DL--------P-FQPLSLPSWEHIHAWHLFIIRVDEARCG--ITRDALMASLKTKGIGTGLHFRAAHTQ--KYYRE-R-- 342 (393)
T ss_dssp TS--------S-CEECCCCSSCEECCCSCEEEECCHHHHS--SCHHHHHHHHHHTTBCCBCCCCCGGGS--HHHHH-H--
T ss_pred cC--------C-cccccCCCCCCCceeEEEEEEecccccc--cCHHHHHHHHHhCCCCcccccCccccC--hhhhc-c--
Confidence 87 5 6776542111 2234677776520 01 466777777777899999998774321 11000 0
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..... +... .......||+|++.++|.+||+++++.|++++..
T Consensus 343 ~~~~~-~~~~---------~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 343 FPTLT-LPDT---------EWNSERICSLPLFPDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp STTCC-CHHH---------HHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred CCccC-ChhH---------HHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 00000 0000 0012358999999999999999999999998764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-21 Score=200.34 Aligned_cols=315 Identities=14% Similarity=0.170 Sum_probs=216.2
Q ss_pred CCceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
++.++|+.+-.. ..|+.+++++....... ..|. ...+.+.|+.|++++|+
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~--------------------------~~y~---~~~~~~lr~~la~~~~~ 66 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARI--------------------------NRYP---FDAEPRVMRKLAEHFSC 66 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGT--------------------------TSCC---TTHHHHHHHHHHHHHTS
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhh--------------------------ccCC---CCchHHHHHHHHHHhCc
Confidence 457899988554 46777888766533211 0011 12356899999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
+++ .|+||+|+|+++++++.++ +||+|++. ..|++ ....++..|++++.++.+ +++.+++++|+++
T Consensus 67 ~~~--~i~~t~G~~~~l~~~~~~~---~gd~vl~~~p~~~~-----~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~-- 133 (337)
T 3p1t_A 67 PED--NLMLVRGIDECFDRISAEF---SSMRFVTAWPGFDG-----YRARIAVSGLRHFEIGLT-DDLLLDPNDLAQV-- 133 (337)
T ss_dssp CGG--GEEEESHHHHHHHHHHHHS---TTSEEEEESSSCSH-----HHHHHTTSCCEEEEECBC-TTSSBCHHHHTTC--
T ss_pred CHH--HEEEeCCHHHHHHHHHHhc---CCCeEEEeCCCcHH-----HHHHHHHcCCEEEEecCC-CCCCCCHHHHHhh--
Confidence 865 7999999999999999998 79997754 35543 234567889999999987 4567899988764
Q ss_pred hcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecccc--CCCCCCCCCCCCCCCcEEEEccccccCCCC
Q 006746 265 SKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACAL--GPKDMDSFGLSLVRPDFLICSFYQIFGENP 341 (632)
Q Consensus 265 ~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~--~g~~m~~ldls~~~~Df~~~S~hK~~G~~P 341 (632)
. +++++++++.+|+||..+|++ +.++|+++++ +++|.++. .+. ....+...+.|+++.|++|++|.++
T Consensus 134 ~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~--~~~~~~~~~~~i~~~S~sK~~g~~G 204 (337)
T 3p1t_A 134 S------RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSF--RARGLAYGENELVFRSFSKSYGLAG 204 (337)
T ss_dssp C------TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSC--SSSCCCCBTTEEEEEESSSTTCCTT
T ss_pred c------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccc--cccccccCCCEEEEeeCchhccCcc
Confidence 1 248999999999999999999 9999999997 56698765 332 2333344567899999999998433
Q ss_pred CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCccc
Q 006746 342 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 421 (632)
Q Consensus 342 ~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~ 421 (632)
.++|+++++++.++.+...... | +.+.
T Consensus 205 ~r~G~~~~~~~~~~~l~~~~~~------------~-----------------------------------------~~~~ 231 (337)
T 3p1t_A 205 LRLGALFGPSELIAAMKRKQWF------------C-----------------------------------------NVGT 231 (337)
T ss_dssp TCCEEEECCHHHHHHHHTTSCT------------T-----------------------------------------CSCH
T ss_pred hheEEEEeCHHHHHHHHhhcCC------------C-----------------------------------------CCCH
Confidence 4568888877665544321100 0 0111
Q ss_pred chhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCC
Q 006746 422 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 501 (632)
Q Consensus 422 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~ 501 (632)
+...++. .+|+... .++...++++...++|.+.|.++ |. +++.+
T Consensus 232 ~~~~a~~------------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------g~---~~~~~- 275 (337)
T 3p1t_A 232 LDLHALE------------------------AALDNDR--AREAHIAKTLAQRRRVADALRGL------GY---RVASS- 275 (337)
T ss_dssp HHHHHHH------------------------HHHTCHH--HHHHHHHHHHHHHHHHHHHHHHT------TC---CBCCC-
T ss_pred HHHHHHH------------------------HHhCCHH--HHHHHHHHHHHHHHHHHHHHHHC------cC---EECCC-
Confidence 1112121 3332211 24556667777788899999886 42 33332
Q ss_pred CCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCC
Q 006746 502 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 581 (632)
Q Consensus 502 ~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 581 (632)
.++.+.+...+ ...+.+++.++||.++.|..|.
T Consensus 276 ----~~~~~~~~~~~-------~~~~~~~l~~~gi~v~~g~~~~------------------------------------ 308 (337)
T 3p1t_A 276 ----EANFVLVENAA-------GERTLRFLRERGIQVKDAGQFG------------------------------------ 308 (337)
T ss_dssp ----SSSEEEEECTT-------THHHHHHHHHTTEECEEGGGGT------------------------------------
T ss_pred ----CCeEEEEEcCC-------HHHHHHHHHHCCeEEEECccCC------------------------------------
Confidence 45666665443 3466777788899998774331
Q ss_pred CCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 582 GITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 582 ~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|++ +.+|+++|+++|+++++
T Consensus 309 ~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 309 LHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 1359999987 89999999999998865
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=209.38 Aligned_cols=338 Identities=12% Similarity=0.138 Sum_probs=226.5
Q ss_pred CCceEeecCCC---C-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI---G-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (632)
Q Consensus 107 ~~~vyLD~ag~---g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~ 182 (632)
++..|+|.++. + ..++.+++++.+.+.... .++..+.+.+| ......+.|+.|+++
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~------------------~~~~~~~~~~g--~~~~~~~l~~~la~~ 96 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFG------------------IGSGGSGHVSG--YSVVHQALEEELAEW 96 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHC------------------SCCCSBTTTTC--CCHHHHHHHHHHHHH
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhC------------------CCCCCcCcccC--ChHHHHHHHHHHHHH
Confidence 35679998884 3 356778887665432110 01111222222 235678999999999
Q ss_pred cCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHH
Q 006746 183 LNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKM 262 (632)
Q Consensus 183 l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~ 262 (632)
+|++ +.+++.|+|+|+.+++.++ .++||.|++....|. .....++..|++++.+|. ++.++|+++
T Consensus 97 ~g~~----~~i~~~sGt~a~~~~~~~~-~~~gd~v~~~~~~~~----~~~~~~~~~g~~~~~~~~------~d~~~l~~~ 161 (384)
T 1bs0_A 97 LGYS----RALLFISGFAANQAVIAAM-MAKEDRIAADRLSHA----SLLEAASLSPSQLRRFAH------NDVTHLARL 161 (384)
T ss_dssp HTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCH----HHHHHHHTSSSEEEEECT------TCHHHHHHH
T ss_pred hCCC----cEEEeCCcHHHHHHHHHHh-CCCCcEEEEcccccH----HHHHHHHHcCCCEEEeCC------CCHHHHHHH
Confidence 9985 3666777799999999988 678999876654443 122345668999988864 478899999
Q ss_pred HHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-C--CCCC-CCCCCCCcEEEEcccccc
Q 006746 263 VVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK-D--MDSF-GLSLVRPDFLICSFYQIF 337 (632)
Q Consensus 263 i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~-~--m~~l-dls~~~~Df~~~S~hK~~ 337 (632)
|++.. ..+++++++..+|+||..+|++ |.++|+++|+++++|.++..+. . ...+ +.-..++|+++.|+||++
T Consensus 162 l~~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~ 238 (384)
T 1bs0_A 162 LASPC---PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF 238 (384)
T ss_dssp HHSCC---SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred HHhcC---CCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh
Confidence 97642 1358999999999999999999 9999999999999999987653 0 0011 111135899999999999
Q ss_pred CCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcC
Q 006746 338 GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG 417 (632)
Q Consensus 338 G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~G 417 (632)
| |.| |+++++++.++.+.... ..| ..+ +
T Consensus 239 ~--~~G-G~~~~~~~~~~~l~~~~------------~~~----------------------~~~---------------~ 266 (384)
T 1bs0_A 239 G--VSG-AAVLCSSTVADYLLQFA------------RHL----------------------IYS---------------T 266 (384)
T ss_dssp S--SCC-EEEEECHHHHHHHHHHC------------HHH----------------------HSS---------------B
T ss_pred h--ccC-cEEEeCHHHHHHHHHhc------------hhh----------------------hcC---------------C
Confidence 9 778 99999877655443210 000 000 0
Q ss_pred CcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEE
Q 006746 418 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI 497 (632)
Q Consensus 418 t~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~I 497 (632)
+.+.....++. ++|+.+.+..++.+.++.+.+.+++.+.|.++ | +++
T Consensus 267 ~~~~~~~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~ 313 (384)
T 1bs0_A 267 SMPPAQAQALR------------------------ASLAVIRSDEGDARREKLAALITRFRAGVQDL------P---FTL 313 (384)
T ss_dssp CCCHHHHHHHH------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS------S---CEE
T ss_pred CCCHHHHHHHH------------------------HHHHHHhccccHHHHHHHHHHHHHHHHHHHhc------C---Ccc
Confidence 01112222222 56776653245788899999999999999887 4 455
Q ss_pred ECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccc
Q 006746 498 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD 577 (632)
Q Consensus 498 ygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 577 (632)
+. ..++++.+.+.+ + ++...+.+.+.++||.++.|....
T Consensus 314 ~~-----~~~~~~~~~~~~--~--~~~~~l~~~l~~~gi~v~~~~~~~-------------------------------- 352 (384)
T 1bs0_A 314 AD-----SCSAIQPLIVGD--N--SRALQLAEKLRQQGCWVTAIRPPT-------------------------------- 352 (384)
T ss_dssp CS-----CCSSBCCEEEES--H--HHHHHHHHHHHHTTEECCEECTTS--------------------------------
T ss_pred cC-----CCCCEEEEEeCC--H--HHHHHHHHHHHHCCcEEEeecCCC--------------------------------
Confidence 42 246677677653 1 344555555555699998663210
Q ss_pred cCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 578 KANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 578 ~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
...+.+.||+|++.+++.+||+++++.|+++
T Consensus 353 -~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 353 -VPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -SCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred -CCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 0113468999999999999999999999864
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=205.70 Aligned_cols=347 Identities=9% Similarity=0.083 Sum_probs=229.9
Q ss_pred HHHHHHhhccCcCCCCceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHH
Q 006746 93 IDQIRAKEYYQLSLSNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL 171 (632)
Q Consensus 93 ~d~iR~~ef~~L~~~~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~ 171 (632)
+|... ++|.. .+.+.|..+..+ +.|+.+++++.+.+... .+ .|+....++
T Consensus 22 ~d~~~-~~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------~~-------------~y~~~~~~~ 72 (391)
T 4dq6_A 22 WSEME-KKYGT---NDLLPMWVADMDFKAAPCIIDSLKNRLEQE------------IY-------------GYTTRPDSY 72 (391)
T ss_dssp HHCHH-HHHSC---SCSEECCSSSCSSCCCHHHHHHHHHHHTTC------------CC-------------CCBCCCHHH
T ss_pred eeecc-cccCC---CCceeccccCCCCCCCHHHHHHHHHHHhCC------------CC-------------CCCCCCHHH
Confidence 34333 45741 457788776655 44678888876543210 00 011112467
Q ss_pred HHHHHHHHHHHcC--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 172 ESAMKKRIMDFLN--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 172 ~~~~R~~ia~~l~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.+++++.+++++| ++++ .|+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.++++
T Consensus 73 ~~~l~~~l~~~~g~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~-----~~~~~~~~g~~~~~~~~~ 144 (391)
T 4dq6_A 73 NESIVNWLYRRHNWKIKSE--WLIYSPGVIPAISLLINEL-TKANDKIMIQEPVYSP-----FNSVVKNNNRELIISPLQ 144 (391)
T ss_dssp HHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SCTTCEEEECSSCCTH-----HHHHHHHTTCEEEECCCE
T ss_pred HHHHHHHHHHHhCCCCcHH--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCHH-----HHHHHHHcCCeEEeeeee
Confidence 7899999999999 5544 7999999999999999998 7889997754 45553 234557789999999887
Q ss_pred -CC--ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 249 -WP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 249 -~~--~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
+. +..+++++|++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++.. |. .
T Consensus 145 ~~~~~~~~~d~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~ 215 (391)
T 4dq6_A 145 KLENGNYIMDYEDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--K 215 (391)
T ss_dssp ECTTSCEECCHHHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--C
T ss_pred ecCCCceEeeHHHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--C
Confidence 33 335899999998865 489999999999999965 56 77889999999999999876 22 1
Q ss_pred CCCCCCCCCc-----EEEEccccccCCCCCceEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 318 SFGLSLVRPD-----FLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 318 ~ldls~~~~D-----f~~~S~hK~~G~~P~G~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
...+..+.+| +++.|++|.+|.+..++|++++++ +.++.+....
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~------------------------------ 265 (391)
T 4dq6_A 216 HIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAF------------------------------ 265 (391)
T ss_dssp CCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH------------------------------
T ss_pred ccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHH------------------------------
Confidence 2333333334 999999999883223468887765 4433332110
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGR 471 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~ 471 (632)
...+ .++++.+...++. .+|+...+ .++.+.++.+
T Consensus 266 -------~~~~-------------~~~~~~~~~~a~~------------------------~~l~~~~~-~~~~~~~~~~ 300 (391)
T 4dq6_A 266 -------TRID-------------IKRNNCFSLVATE------------------------ASYNNGES-WLESFLEYLE 300 (391)
T ss_dssp -------HHTT-------------CCCCCHHHHHHHH------------------------HHHHHCHH-HHHHHHHHHH
T ss_pred -------Hhhc-------------CCCCCHHHHHHHH------------------------HHHhchHH-HHHHHHHHHH
Confidence 0000 0112222222222 44443222 2678888999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEE-EEEccCCCCccCHHHHHHHH-HhCCcEEccCccCChHHH
Q 006746 472 CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA-FNVFDWKREKIEPVLVQKLA-DRENISLSYGSLHHIWFS 549 (632)
Q Consensus 472 ~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~iva-Fnv~~~~G~~i~~~~V~kla-~~~gI~lr~G~~c~~~~~ 549 (632)
.+.+++.+.|.+. .|.++++.|. ++.+. +.+... + ++...+.+.+ +++||.++.|..|..
T Consensus 301 ~~~~~l~~~l~~~-------~~~~~~~~~~-----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~--- 362 (391)
T 4dq6_A 301 SNIDFAIKYINEN-------MPKLKVRKPE-----GTYLLWVDFSAL-G--LSDEELESILVQKGKVALNQGNSFGI--- 362 (391)
T ss_dssp HHHHHHHHHHHHH-------CTTSEECCCS-----BSSEEEEECGGG-C--CCHHHHHHHHHHTTCEECEEGGGGCT---
T ss_pred HHHHHHHHHHHhh-------CCCCEecCCC-----ccEEEEEEhhhc-C--CCHHHHHHHHHHhCCEEeeCchhhCC---
Confidence 9999999999873 1567777653 34443 566531 1 4566665544 445999988754432
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+.+.||+|++ ++.|||+++++.|++.++
T Consensus 363 -------------------------------~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 363 -------------------------------GGSGYQRINLA--CPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp -------------------------------TCTTEEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred -------------------------------CCCCeEEEEEc--CCHHHHHHHHHHHHHHhC
Confidence 13469999999 799999999999998763
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-22 Score=208.80 Aligned_cols=319 Identities=12% Similarity=0.077 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
....+.|++++++++++ .++||+|+|+|+.+++.++.+++||+|++ ...|++ . ...++..|++++.++.+
T Consensus 38 ~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~-~----~~~~~~~g~~~~~~~~~ 108 (374)
T 3uwc_A 38 AELEKFEKRFAALHNAP----HAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIA-S----VGAIVQAGATPVLVDSE 108 (374)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH-H----HHHHHHTTCEEEEECBC
T ss_pred hhHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHH-H----HHHHHHcCCEEEEEecC
Confidence 45678999999999986 58999999999999999997889999765 456664 2 23457789999999998
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC--
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR-- 325 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~-- 325 (632)
.++.+|+++++++++++ +++++ .+|+||...|++ |.++|+++|+++++|.++..+. .++...++
T Consensus 109 -~~~~~d~~~l~~~~~~~------~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~---~~~~~~~~~~ 175 (374)
T 3uwc_A 109 -NGYVIDPEKIEAAITDK------TKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILG---RINDKFVGSW 175 (374)
T ss_dssp -TTSSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC---EETTEETTSS
T ss_pred -CCCCcCHHHHHHhCCCC------ceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCc---eeCCeecccc
Confidence 67778999998887653 46666 677999999999 9999999999999999998875 23333333
Q ss_pred CcEEEEccc--cccCCCCCc-eEEEEEeCC-CccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 326 PDFLICSFY--QIFGENPSG-FGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 326 ~Df~~~S~h--K~~G~~P~G-~G~L~Vr~~-~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
+|++++|+| |++| |.| .|+++.++. ..+.+.+...+|... .++ .. ..
T Consensus 176 ~d~~~~s~~~~K~l~--~~g~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~--------------------~~ 226 (374)
T 3uwc_A 176 GQFACFSLHPLKNLN--VWSDAGVIITHSDEYAEKLRLYRNHGLIN------RDV-CV--------------------EY 226 (374)
T ss_dssp SSEEEEECSSSSSSC--CSSCCEEEEESCHHHHHHHHHHTBTTEEE------TTE-ES--------------------SC
T ss_pred ccEEEEeCCCCCcCC--ccceeEEEEeCCHHHHHHHHHHHhcCccc------cCc-cc--------------------cc
Confidence 699999999 9988 534 555555553 333333322112110 000 00 00
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
+.++ .+..+. .++......+++.+.+|.+.+.+++.+.|
T Consensus 227 ~~~~-----------------~~~~~~------------------------aa~~~~~~~~~~~~~~~~~~~~~~l~~~l 265 (374)
T 3uwc_A 227 GINC-----------------RMDTIQ------------------------AVIANRLMNQLETITEKRRGIAHLYDQSF 265 (374)
T ss_dssp CCBC-----------------BCCHHH------------------------HHHHHHHGGGHHHHHHHHHHHHHHHHHHT
T ss_pred cccC-----------------CCCHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0011 011122 45555555578889999999999999999
Q ss_pred HccCCCCCCCCCc-EEEECCCCCCCC-CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCc----cCChHHHhHHHHh
Q 006746 482 MKLQHPNTEGNAL-VKIYGPKIRFDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS----LHHIWFSDKYQKE 555 (632)
Q Consensus 482 ~~l~h~~~~G~p~-v~Iygp~~~~~r-g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~----~c~~~~~~~~~~~ 555 (632)
.++ +. +++..+. ..+ ...+.|.+.. .+...+.+.+.++||.++.|+ +|.+.+... +
T Consensus 266 ~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~--~- 327 (374)
T 3uwc_A 266 VDL--------SEFIDVPVRR--EGVYHVFHIYVLRV-----KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSL--G- 327 (374)
T ss_dssp GGG--------TTTEECCCCC--TTEECCCSSEEEEE-----TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGG--C-
T ss_pred ccC--------CCeEEeccCC--CCCceeeEEEEEEc-----CCHHHHHHHHHHCCCccccCCCCccccChhhhhc--C-
Confidence 887 44 5553322 122 2223454443 256677777777899999885 333321100 0
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.... +. . ........||+|++.++|.|||+++++.|+++++.
T Consensus 328 ----~~~~~-~~-----~----~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 328 ----YQQGD-FP-----M----AEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp ----CCTTS-CH-----H----HHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ----CccCC-Cc-----c----HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 00000 00 0 00012369999999999999999999999998764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=214.16 Aligned_cols=325 Identities=10% Similarity=0.020 Sum_probs=214.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCCC--------ccEEEeCCHHHHHHHHHhhCCC------------------CCCCeEEEec
Q 006746 168 ESGLESAMKKRIMDFLNISEND--------YGMVFTANRTSAFKLLAESYPF------------------MSVKNLLTVY 221 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~e--------y~vvft~naT~al~lv~~sl~~------------------~~gd~ilt~~ 221 (632)
..++.+++.+.+++++|.+.+. -..+||+++|+|+.+.+..... .+++.|+++.
T Consensus 116 ~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~ 195 (481)
T 4e1o_A 116 CTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASD 195 (481)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEET
T ss_pred HHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcC
Confidence 3577888889999999997531 1578999999998765544311 1355666554
Q ss_pred -cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh
Q 006746 222 -DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE 299 (632)
Q Consensus 222 -d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~ 299 (632)
.|.+ + .+.++..|++++.+|.+ +++.+|+++|+++|++++.....+.++++++.++.||..-|++ |+++|++
T Consensus 196 ~~H~s--~---~~~~~~~g~~~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~ 269 (481)
T 4e1o_A 196 QAHSS--V---EKAGLISLVKMKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAR 269 (481)
T ss_dssp TSCHH--H---HHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred cchHH--H---HHHHHhCCCceEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH
Confidence 5543 2 23345579999999997 6789999999999986532223467899999999999999999 9999999
Q ss_pred CCcEEEEeccccCCCCCC-CCC--CC-CCCCcEEEEccccccCCCCCceEEEEEeCCCc--ccc--CCCCCCCceeeccc
Q 006746 300 NDWHILIDACALGPKDMD-SFG--LS-LVRPDFLICSFYQIFGENPSGFGCLFVKKSTV--PIL--VDNTSSGMVSLLPA 371 (632)
Q Consensus 300 ~g~~vlvDaaq~~g~~m~-~ld--ls-~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~--~~L--~~~~~gG~v~~~~~ 371 (632)
+|++++||+|+.++.-.. ... +. ...+|++++++||+++. |.|+|+++++++.. ..+ .+.+..+.
T Consensus 270 ~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~------ 342 (481)
T 4e1o_A 270 EGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMV-HFDCTGFWVKDKYKLQQTFSVNPIYLRHA------ 342 (481)
T ss_dssp HTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESBHHHHHTTTCCCCGGGCCT------
T ss_pred cCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCC-CCceEEEEEeCHHHHHHHhcCCchhccCc------
Confidence 999999999987652101 111 11 11459999999998876 99999999998643 111 11111100
Q ss_pred ccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhh
Q 006746 372 KKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIE 451 (632)
Q Consensus 372 ~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 451 (632)
..+. . +.+. .-+... +.. ....++-
T Consensus 343 -------~~~~---~------~~~~---~~~~~~------------~r~-~~~l~~~----------------------- 367 (481)
T 4e1o_A 343 -------NSGV---A------TDFM---HWQIPL------------SRR-FRSVKLW----------------------- 367 (481)
T ss_dssp -------TTTT---S------CCGG---GGSSSS------------CCC-CTHHHHH-----------------------
T ss_pred -------ccCC---C------CCcc---cccccC------------CCC-ccHHHHH-----------------------
Confidence 0000 0 0000 000000 000 1112222
Q ss_pred hhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHH
Q 006746 452 CRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLA 531 (632)
Q Consensus 452 ~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla 531 (632)
.+|..+...|++.+.+|...+++++.+.|.++ |.++++.+. ..++|+|.+.+.+ ....++.+++.
T Consensus 368 -~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~--------~g~~~~~~~----~~~~v~f~~~~~~--~~~~~l~~~L~ 432 (481)
T 4e1o_A 368 -FVIRSFGVKNLQAHVRHGTEMAKYFESLVRND--------PSFEIPAKR----HLGLVVFRLKGPN--SLTENVLKEIA 432 (481)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTEECCSCC----CSSEEEEEESSCH--HHHHHHHHHHH
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCeEEecCC----ceeEEEEEeCCch--HHHHHHHHHHH
Confidence 56666666788999999999999999999987 778888763 5789999986521 12233444454
Q ss_pred HhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccC-CCCCHHHHHHHHHHHHHhh
Q 006746 532 DRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 532 ~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg-~~~t~eDV~rlv~~l~~~l 610 (632)
++..+.+..+ ...+...+|+++. +.+|.+||+++++.|++++
T Consensus 433 ~~g~~~~~~~-------------------------------------~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 433 KAGRLFLIPA-------------------------------------TIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAA 475 (481)
T ss_dssp HHCSSBCEEE-------------------------------------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hCCeEEEEee-------------------------------------EECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4432332211 0113468999965 6679999999999999887
Q ss_pred hh
Q 006746 611 DA 612 (632)
Q Consensus 611 ~~ 612 (632)
+.
T Consensus 476 ~~ 477 (481)
T 4e1o_A 476 TL 477 (481)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=210.18 Aligned_cols=317 Identities=12% Similarity=-0.027 Sum_probs=211.5
Q ss_pred HHHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCC-CCCCC--eEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 173 SAMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYP-FMSVK--NLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 173 ~~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~-~~~gd--~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
.+.|+.|+++++ ++++ .|+||+|+|+|+.+++.++. +++|| +|++. ..|++ ....++..|+++
T Consensus 85 ~~lr~~la~~~~~~~g~~~~~~--~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~-----~~~~~~~~g~~~ 157 (437)
T 3g0t_A 85 PELKQEASRFAKLFVNIDIPAR--ACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNL-----NKLQCRILGQKF 157 (437)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHH-----HHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhhCCCCCcc--cEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHh-----HHHHHHHcCCEE
Confidence 367888888877 4554 79999999999999999983 28899 87654 45553 234556789999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCC--CC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPK--DM 316 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~--~m 316 (632)
+.++++..+..+|+++|++++... +++++++++.+|+||..+| ++ |+++|+++|+++++|.++.... ..
T Consensus 158 ~~v~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~ 232 (437)
T 3g0t_A 158 ESFDLFEYRGEKLREKLESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD 232 (437)
T ss_dssp EEEEGGGGCTTHHHHHHHHHHTTT-----CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC
T ss_pred EEEeecCCCCccCHHHHHHHHhcC-----CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC
Confidence 999997344468999999999321 3588999999999999998 55 6888999999999999986421 00
Q ss_pred CC--------CCCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCcc-ccCCC---CCCCceeecccccccccccccCC
Q 006746 317 DS--------FGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVP-ILVDN---TSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 317 ~~--------ldls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~-~L~~~---~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
.+ .++.. .+.++++.|++|.+|.+..++|+++++++.++ .+... ..++... ..++ .
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~---- 301 (437)
T 3g0t_A 233 YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFG-----EALS--S---- 301 (437)
T ss_dssp CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHH-----HHHH--T----
T ss_pred cCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchh-----HHHH--H----
Confidence 12 23333 67789999999999932223899999877655 42211 1110000 0000 0
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC-
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG- 462 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G- 462 (632)
.. ...+ ..+.+.+...++. .+|+......
T Consensus 302 ----------~~---~~~~-------------~~~~~~~~~~a~~------------------------~~l~~~~~~~~ 331 (437)
T 3g0t_A 302 ----------SA---LYAL-------------SSGATHSAQWGMA------------------------AMLKACNDGEY 331 (437)
T ss_dssp ----------TH---HHHH-------------HSSSCHHHHHHHH------------------------HHHHHHHTTSC
T ss_pred ----------HH---Hhhh-------------cCCCCHHHHHHHH------------------------HHHhCcHhHHH
Confidence 00 0000 1112222223222 4555443211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC---CCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEE
Q 006746 463 -LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI---RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL 538 (632)
Q Consensus 463 -l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~---~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~l 538 (632)
++.+.++.+.+.+++.+.|.++ | ++++.+.. +...+..+.+.+.+ ++...+.+.+.++||.+
T Consensus 332 ~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gi~v 397 (437)
T 3g0t_A 332 NFRDSVIEYGRKARIMKKMFLDN------G---FNIVYDKDGNEPLADGFYFTVGYKG-----MDSSKLIEKFVRYGMCA 397 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT------T---EEESSCEETTEECCSSSEEEEEETT-----CCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc------C---CEEeccccCCCCCceeEEEEEecCC-----CCHHHHHHHHHHcCeEE
Confidence 8899999999999999999987 3 56662110 01345667777763 56667766666779999
Q ss_pred ccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 539 SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 539 r~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+.|..|.. ...+.||+|++.. |.+||+++++.|++++.
T Consensus 398 ~~~~~~~~----------------------------------~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 398 ITLKTTGS----------------------------------KRNEAMRICTSLL-PESQFPDLEKRLQMLNA 435 (437)
T ss_dssp EESTTTTC----------------------------------CCTTCEEEECSSS-CGGGHHHHHHHHHHHHH
T ss_pred eeccccCC----------------------------------CCCCEEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 87754431 1225899999954 99999999999998865
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=207.90 Aligned_cols=324 Identities=12% Similarity=0.102 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
....+.|+.+++++|++ .++||+|+|+|+.+++.++.+++||+|++ ...|++ . ...++..|++++.++++
T Consensus 56 ~~~~~l~~~la~~~~~~----~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~~~~~ 126 (391)
T 3dr4_A 56 RFIVEFEKAFADYCGVK----HAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIA-S----ANSVTYCGATPVLVDND 126 (391)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECBC
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHH-H----HHHHHHCCCEEEEEecC
Confidence 45679999999999986 58999999999999999987889999765 457765 2 23456789999999998
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
..++.+++++|+++++++ +++++ .+|+||...|++ |.++|+++|+++++|++|..|.......+..+ .|
T Consensus 127 ~~~~~~d~~~l~~~~~~~------~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~d 196 (391)
T 3dr4_A 127 PRTFNLDAAKLEALITPR------TKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GD 196 (391)
T ss_dssp TTTCSBCGGGSGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SS
T ss_pred ccccCcCHHHHHHhcCCC------ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CC
Confidence 556788999998887653 46666 357999999999 99999999999999999987652111112222 36
Q ss_pred EEEEc--cccccCCCCCceEEEEEeCC-CccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccC
Q 006746 328 FLICS--FYQIFGENPSGFGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 404 (632)
Q Consensus 328 f~~~S--~hK~~G~~P~G~G~L~Vr~~-~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~ 404 (632)
+.++| .||+++ +...|+++.+++ ..+.+.+...+|... ...+|.. ..|. +
T Consensus 197 i~~~S~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~--------------------~~g~-~ 249 (391)
T 3dr4_A 197 CATFSFFGNAIIT--TGEGGMITTNDDDLAAKMRLLRGQGMDP----NRRYWFP--------------------IVGF-N 249 (391)
T ss_dssp EEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHHBTTCCT----TSTTCCS--------------------SCCC-B
T ss_pred EEEEECCCCCcCC--cCCeEEEEECCHHHHHHHHHHHhcCCCC----CCccccc--------------------cccc-c
Confidence 77777 559887 433455555543 333343322112110 0011100 0110 0
Q ss_pred CCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Q 006746 405 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL 484 (632)
Q Consensus 405 f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l 484 (632)
+ .+..+. .++......+++.+.+|.+.+.+++.+.|.++
T Consensus 250 ~-----------------~~~~l~------------------------aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 288 (391)
T 3dr4_A 250 Y-----------------RMTNIQ------------------------AAIGLAQLERVDEHLAARERVVGWYEQKLARL 288 (391)
T ss_dssp C-----------------BCCHHH------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG
T ss_pred c-----------------CCCHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 0 011122 45555555678999999999999999999987
Q ss_pred CCCCCCCCCcEEEECC--CCC-CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCc---cCChHHHhHHHHhhhh
Q 006746 485 QHPNTEGNALVKIYGP--KIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS---LHHIWFSDKYQKEKDN 558 (632)
Q Consensus 485 ~h~~~~G~p~v~Iygp--~~~-~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~---~c~~~~~~~~~~~~~~ 558 (632)
| ++++.+ ... .....++.+.+.+..| ++...+.+.+.++||.++.|. +|.+.+..... ..
T Consensus 289 ------g---~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~---~~ 354 (391)
T 3dr4_A 289 ------G---NRVTKPHVALTGRHVFWMYTVRLGEGLS--TTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLAT---DD 354 (391)
T ss_dssp ------T---TSEECCCCCTTSCCCCSSEEEEECSSCS--SCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCC---TT
T ss_pred ------C---ccccCcCCCCCCcceeEEEEEEECCccc--hhHHHHHHHHHHCCCceeecCCccccChhhhhcCc---CC
Confidence 3 234454 211 1223456666664222 567778777778899999886 66654322100 00
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+... .......||++++.++|.|||+++++.|++++
T Consensus 355 -------~~~~---------~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 355 -------LKIA---------EACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp -------CHHH---------HHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred -------ChHH---------HHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0000 01123589999999999999999999998875
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=207.27 Aligned_cols=331 Identities=12% Similarity=0.014 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+.+.|++|++++|++ .|+||+|+|+|+.+++.++.+++||+|++ ...|++ ... .++..|++++.++++
T Consensus 32 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~-~~~----~~~~~g~~~~~v~~~ 102 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKSE----NALALNSATAALHLALRVAGVKQDDIVLASSFTFIA-SVA----PICYLKAKPVFIDCD 102 (394)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGG-GTH----HHHHTTCEEEEECBC
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHH-HHH----HHHHcCCEEEEEEeC
Confidence 56679999999999983 69999999999999999987789999765 457775 222 234579999999998
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC---CCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL---SLV 324 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl---s~~ 324 (632)
.++.+|+++|+++|++.. .++++|++++ +||...|++ |.++|+++|+++++|+++..|.. ..+. +..
T Consensus 103 -~~~~~d~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~--~~~~~~~~~~ 173 (394)
T 1o69_A 103 -ETYNIDVDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSF--YKNKALGTFG 173 (394)
T ss_dssp -TTSSBCHHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE--ETTEETTSSS
T ss_pred -CCCCcCHHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccce--eCCccccccc
Confidence 677899999999998621 1257888875 799999999 99999999999999999986541 1121 123
Q ss_pred CCcEEEEccccccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcccc
Q 006746 325 RPDFLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 403 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~ 403 (632)
++|++++|.+|.+| |.++|+++++ ++.++.+.+....|... .+ | +.. .+.|.
T Consensus 174 ~~~~~s~s~~K~l~--~~~~G~~~~~~~~l~~~l~~~~~~~~~~-~~-----~---------~~~---------~~~g~- 226 (394)
T 1o69_A 174 EFGVYSYNGNKIIT--TSGGGMLIGKNKEKIEKARFYSTQAREN-CL-----H---------YEH---------LDYGY- 226 (394)
T ss_dssp SEEEEECCTTSSSC--CSSCEEEEESCHHHHHHHHHHTBTCCCS-SS-----S---------CCC---------SSCCC-
T ss_pred CcEEEEEeCCccCC--CCCceEEEECCHHHHHHHHHHHHhcccc-Cc-----c---------ccc---------cccCc-
Confidence 57899999999888 7799999996 56555554321111100 00 0 000 00010
Q ss_pred CCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Q 006746 404 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK 483 (632)
Q Consensus 404 ~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~ 483 (632)
+.|++++....++. .++. ++.+.+|.+.+.+++.+.|.+
T Consensus 227 -----------~~~~~~~~aa~~l~-------------------------~l~~-----l~~~~~~~~~~~~~l~~~L~~ 265 (394)
T 1o69_A 227 -----------NYRLSNVLGAIGVA-------------------------QMEV-----LEQRVLKKREIYEWYKEFLGE 265 (394)
T ss_dssp -----------BCBCCHHHHHHHHH-------------------------HHTT-----HHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------ccCcCHHHHHHHHH-------------------------HHHH-----HHHHHHHHHHHHHHHHHHhcc
Confidence 12233333333321 2322 455778899999999999875
Q ss_pred cCCCCCCCCCcEEEECCCCCCCCC--cEEEEEEccCC---------------CC--ccCHHHHHHHHHhCCcEEccCccC
Q 006746 484 LQHPNTEGNALVKIYGPKIRFDRG--PALAFNVFDWK---------------RE--KIEPVLVQKLADRENISLSYGSLH 544 (632)
Q Consensus 484 l~h~~~~G~p~v~Iygp~~~~~rg--~ivaFnv~~~~---------------G~--~i~~~~V~kla~~~gI~lr~G~~c 544 (632)
+ ++++++.. ..++ .++.|.+.+.. |. .++...+.+.+.++||.++.|..|
T Consensus 266 ~----------~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~ 334 (394)
T 1o69_A 266 Y----------FSFLDELE-NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKA 334 (394)
T ss_dssp T----------EECCCCCT-TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCC
T ss_pred c----------ccccCCCC-CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCc
Confidence 3 55555421 1122 26778776310 00 135667777777799999999655
Q ss_pred ChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 545 HIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
... ... +......+- .. ........+|+..+.++|.|||+++++.|++++..+
T Consensus 335 ~~~--~p~-------~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 335 MHT--QEV-------FKGAKAYLN---GN----SELFFQKGICLPSGTAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp GGG--CGG-------GTTCEEEEC---SH----HHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ccc--chh-------hhccCCCCC---hH----HHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 321 000 000000000 00 000011356666799999999999999999987654
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-21 Score=205.46 Aligned_cols=297 Identities=12% Similarity=0.095 Sum_probs=202.2
Q ss_pred HHHHHHHHH----cCCCCCCc-cEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDF----LNISENDY-GMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~----l~a~~~ey-~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.++++ +|.+.+.. .|+||+|+|+|+.+++.++ .++||+|++ ...|++ . ...++..|++++.++.
T Consensus 71 ~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~v~~ 144 (386)
T 1u08_A 71 ALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-VRNGDEVICFDPSYDS-Y----APAIALSGGIVKRMAL 144 (386)
T ss_dssp HHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHh-CCCCCEEEEeCCCchh-H----HHHHHHcCCEEEEeec
Confidence 556666665 47543333 6999999999999999998 688999765 456664 2 2345678999999998
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMDSF 319 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~~l 319 (632)
+..++.++.++|++++.+ +++++++++.+|+||..+| ++ |+++|+++|+++++|.++.. |....++
T Consensus 145 ~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 218 (386)
T 1u08_A 145 QPPHFRVDWQEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASV 218 (386)
T ss_dssp CTTTCCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCG
T ss_pred CcccCcCCHHHHHHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcCh
Confidence 744567899999998864 3589999999999999997 46 78899999999999999875 2210122
Q ss_pred -CCC-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 320 -GLS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 320 -dls-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
.+. ..+.|+++.|++|+|| +.| +|+++++++.++.+..... .
T Consensus 219 ~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~--------------------------------~ 264 (386)
T 1u08_A 219 LAHPQLRERAVAVSSFGKTYH--MTGWKVGYCVAPAPISAEIRKVHQ--------------------------------Y 264 (386)
T ss_dssp GGSHHHHTTEEEEEEHHHHTT--CGGGCCEEEECCHHHHHHHHHHHH--------------------------------H
T ss_pred hcccCccCcEEEEecchhhcC--CcccceEEEEcCHHHHHHHHHHHH--------------------------------h
Confidence 221 3578999999999999 558 8999988766544432100 0
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~ 475 (632)
. .+ +.+.+...++. .+|+.. ...++.+.++.+.+.+
T Consensus 265 ---~----~~------------~~~~~~~~a~~------------------------~~l~~~-~~~~~~~~~~~~~~~~ 300 (386)
T 1u08_A 265 ---L----TF------------SVNTPAQLALA------------------------DMLRAE-PEHYLALPDFYRQKRD 300 (386)
T ss_dssp ---H----TS------------SCCHHHHHHHH------------------------HHHHHC-THHHHTHHHHHHHHHH
T ss_pred ---h----cc------------CCChHHHHHHH------------------------HHHhCC-cHHHHHHHHHHHHHHH
Confidence 0 00 01111112221 455432 2246778889999999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHH-HHHHhCCcEEccCccCChHHHhHHHH
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQ-KLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~-kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
+|.+.|.++ | ++++.|. .+..+.+.+.+.. .++...+. ++++++||.++.|..|..
T Consensus 301 ~l~~~L~~~------g---~~~~~~~----~g~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~-------- 357 (386)
T 1u08_A 301 ILVNALNES------R---LEILPCE----GTYFLLVDYSAVS--TLDDVEFCQWLTQEHGVAAIPLSVFCA-------- 357 (386)
T ss_dssp HHHHHTTSS------S---CEECCCC----BSSEEEEECTTTC--CSCHHHHHHHHHHHSCEECEEGGGGCS--------
T ss_pred HHHHHHHHC------C---CeecCCC----ceEEEEEecCCCC--CCCHHHHHHHHHHhCCEEEeCchHhCC--------
Confidence 999999876 3 4555542 3557777765421 03455554 566789999987632211
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
+..+.+.||+|++ ++.+||+++++.|++|
T Consensus 358 ------------------------~~~~~~~iRis~~--~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 358 ------------------------DPFPHKLIRLCFA--KKESTLLAAAERLRQL 386 (386)
T ss_dssp ------------------------SCCCSCEEEEECC--SCHHHHHHHHHHHTTC
T ss_pred ------------------------CCCCCCEEEEEEc--CCHHHHHHHHHHHhhC
Confidence 0113468999998 4899999999988653
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=206.18 Aligned_cols=299 Identities=13% Similarity=0.119 Sum_probs=202.4
Q ss_pred HHHHHHHHHHc----CCCCCCcc-EEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 173 SAMKKRIMDFL----NISENDYG-MVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~ey~-vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+.|+.+++++ |.+.+... |++|+|+|+|+.+++.++ .++||+|++ ...|++ . ...++..|++++.++
T Consensus 66 ~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~-~----~~~~~~~g~~~~~v~ 139 (389)
T 1gd9_A 66 LELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-LKDGEEVLIPTPAFVS-Y----APAVILAGGKPVEVP 139 (389)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-CCTTCEEEEEESCCTT-H----HHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHCCCEEEEec
Confidence 36677777777 84322226 999999999999999998 788999765 456764 2 234566899999999
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCCCC--CC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKDMD--SF 319 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~m~--~l 319 (632)
.++. ...+++++|+++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++..+..-. ..
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 213 (389)
T 1gd9_A 140 TYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHY 213 (389)
T ss_dssp CCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCC
T ss_pred cCCccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCC
Confidence 8732 3468999999988653 588999999999999996 77 8899999999999999987643100 11
Q ss_pred CCC----CCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 320 GLS----LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 320 dls----~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
++. ..+.|+++.|++|++| +.| +|+++++++.++.+.+...++ .|
T Consensus 214 ~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~~----------~~----------------- 264 (389)
T 1gd9_A 214 SIASLDGMFERTITVNGFSKTFA--MTGWRLGFVAAPSWIIERMVKFQMYN----------AT----------------- 264 (389)
T ss_dssp CGGGSTTCGGGEEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHHTTT----------TC-----------------
T ss_pred CHhhccCCCCCEEEEecChhhcC--CcccceEEEEECHHHHHHHHHHHhhh----------cc-----------------
Confidence 221 1467999999999999 557 699999876655443211000 00
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh-hCHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMISRRGRC 472 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~-~Gl~~I~~r~~~ 472 (632)
+.+.+...++. ++|+.... .+++.+.++.+.
T Consensus 265 ------------------------~~~~~~~~a~~------------------------~~l~~~~~~~~~~~~~~~~~~ 296 (389)
T 1gd9_A 265 ------------------------CPVTFIQYAAA------------------------KALKDERSWKAVEEMRKEYDR 296 (389)
T ss_dssp ------------------------SCCHHHHHHHH------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHHH------------------------HHHhCCCcchHHHHHHHHHHH
Confidence 00111111111 34443221 146788889999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHhH
Q 006746 473 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 473 L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~~ 551 (632)
+.++|.+.|.++ |. +++.|. .+..+.+.+.+. | ++...+.+ |++++||.++.|..|..
T Consensus 297 ~~~~l~~~L~~~------g~---~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~----- 355 (389)
T 1gd9_A 297 RRKLVWKRLNEM------GL---PTVKPK----GAFYIFPRIRDT-G--LTSKKFSELMLKEARVAVVPGSAFGK----- 355 (389)
T ss_dssp HHHHHHHHHHHT------TC---CCCCCC----BTTEECCBCGGG-T--CCHHHHHHHHHHHTCEECEEGGGGCG-----
T ss_pred HHHHHHHHHHHc------CC---eecCCC----eeeEEEEeccCC-C--CCHHHHHHHHHHhCCEEEeCchhhCC-----
Confidence 999999999886 32 333332 233444455420 1 35555554 55589999987754331
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||+|++. +.+||+++++.|+++++.
T Consensus 356 -----------------------------~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 356 -----------------------------AGEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp -----------------------------GGTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 023589999985 899999999999988764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=205.61 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=129.8
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+......+++.|+++++++|++ +.| +++++|+|+.+++.++ +++||+|++ ...|++. ...+...++..|+++
T Consensus 52 y~~~~~~~~~~l~~~la~~~g~~---~~v-~~~sGt~A~~~~l~~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~~~g~~~ 125 (421)
T 2ctz_A 52 YSRIMNPTVDVLEKRLAALEGGK---AAL-ATASGHAAQFLALTTL-AQAGDNIVSTPNLYGGT-FNQFKVTLKRLGIEV 125 (421)
T ss_dssp CBTTBCHHHHHHHHHHHHHHTCS---EEE-EESSHHHHHHHHHHHH-CCTTCEEEECSCCCHHH-HHHHHTHHHHTTCEE
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---ceE-EecCHHHHHHHHHHHH-hCCCCEEEEeCCCchHH-HHHHHHHHHHcCCEE
Confidence 33334467789999999999986 245 4556799999999988 789999765 4677763 333334457789999
Q ss_pred EEE-eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccc-cCCCCCCCC
Q 006746 243 MSA-EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACA-LGPKDMDSF 319 (632)
Q Consensus 243 ~~v-~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq-~~g~~m~~l 319 (632)
+.+ +.+ ++++|+++|+++ +++|++++.+|+||...|++ |.++|+++|+++++|++| ..|....++
T Consensus 126 ~~~~~~~------d~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~ 193 (421)
T 2ctz_A 126 RFTSREE------RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL 193 (421)
T ss_dssp EECCTTC------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG
T ss_pred EEECCCC------CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCcc
Confidence 888 653 788999888753 58999999999999999999 999999999999999999 777522233
Q ss_pred CCCCCCCcEEEEccccccCCCCC-ceEEEEEe
Q 006746 320 GLSLVRPDFLICSFYQIFGENPS-GFGCLFVK 350 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~-G~G~L~Vr 350 (632)
.+++|++++|+||++|. |. ++|++++.
T Consensus 194 ---~~~~Di~~~s~~K~l~~-~g~~~G~~~~~ 221 (421)
T 2ctz_A 194 ---AWGAALVTHSLTKWVGG-HGAVIAGAIVD 221 (421)
T ss_dssp ---GGTCSEEEEETTTTTTC-SSCCCCEEEEE
T ss_pred ---ccCCeEEEECCcccccC-CCCcEEEEEEe
Confidence 35799999999998885 54 37888886
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-21 Score=203.80 Aligned_cols=335 Identities=13% Similarity=0.103 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC------CCCCCCeEEE-eccccchhhHHHHHHHHhcCCEE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY------PFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl------~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
..+++.|+.+++++|++ .++|++|+|+|+.+++.++ .+++|++|++ ..+|++. . ..++..|+++
T Consensus 34 ~~~~~l~~~la~~~~~~----~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~-~----~~~~~~g~~~ 104 (390)
T 3b8x_A 34 EYVKQYETQFAKTFGSK----YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTT-Y----YPLQQYGLRV 104 (390)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHH-H----HHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHH-H----HHHHHcCCEE
Confidence 56679999999999986 4789999999999999998 5788999765 5677752 2 2345689999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.+++++.++.+|+++|+++|+++ +++|++++ .+|...|++ |.++|+++|+++++|++|+.|.. . +.
T Consensus 105 ~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~--~-~~ 172 (390)
T 3b8x_A 105 KFVDIDINTLNIDIESLKEAVTDS------TKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGAT--F-NN 172 (390)
T ss_dssp EEECBCTTTCSBCHHHHHHHCCTT------EEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCE--E-TT
T ss_pred EEEecCccccCcCHHHHHHHhCcC------CeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCE--E-CC
Confidence 999998545789999999988753 47888863 689999999 99999999999999999998752 2 33
Q ss_pred CCCCC--cEEEEcc---ccccCCCCCceEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 322 SLVRP--DFLICSF---YQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 322 s~~~~--Df~~~S~---hK~~G~~P~G~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
..++. |+.++|+ ||+.+ |.| |++++++ ...+.+++...+|............. .. ....+. .+..+
T Consensus 173 ~~~g~~~~~~~~s~~~~k~~~~--g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~---~~~~~ 244 (390)
T 3b8x_A 173 KCAGTFGLMGTFSSFYSNHIAT--MEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTG-VK-SDDQFE---ESFKF 244 (390)
T ss_dssp EETTSSSSEEEEECCTTSSSCS--SSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTE-EC-CSCTTT---SSSCB
T ss_pred cccccccceEEEEccCCCCCcc--CCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccc-cc-cccccc---cccce
Confidence 33343 7777664 55544 556 8888887 44444443222221000000000000 00 000000 00000
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~ 475 (632)
. ..|. +.++.++..+.++ .+|+ .++.+.+|.+.+.+
T Consensus 245 ~--~~g~------------~~~~~~~~aa~~l-------------------------~~l~-----~l~~~~~~~~~~~~ 280 (390)
T 3b8x_A 245 V--LPGY------------NVRPLEMSGAIGI-------------------------EQLK-----KLPRFISVRRKNAE 280 (390)
T ss_dssp C--SCCC------------BCCCCHHHHHHHH-------------------------HHHH-----HHHHHHHHHHHHHH
T ss_pred e--cccc------------ccCcCHHHHHHHH-------------------------HHHH-----HHHHHHHHHHHHHH
Confidence 0 0110 1123344434433 2233 24678889999999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEE--EEccCCCCccCHHHHHHHHHhCCcEEcc---CccCCh-HHH
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF--NVFDWKREKIEPVLVQKLADRENISLSY---GSLHHI-WFS 549 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaF--nv~~~~G~~i~~~~V~kla~~~gI~lr~---G~~c~~-~~~ 549 (632)
++.+.|.++ |.++++++. .+.+.+.| .+.+..| ++...+.+.+.++||.++. |.+|.. +..
T Consensus 281 ~l~~~L~~~--------~~~~~~~~~---~~~~~~~~~i~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~ 347 (390)
T 3b8x_A 281 YFLDKFKDH--------PYLDVQQET---GESSWFGFSFIIKKDSG--VIRKQLVENLNSAGIECRPIVTGNFLKNTDVL 347 (390)
T ss_dssp HHHHHHTTC--------SSEEECCCC---SBCCCCEEEEEECTTSC--CCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHH
T ss_pred HHHHHhcCC--------CCcccCCCC---CCcccEEEEEEecCcCc--ccHHHHHHHHHHCCCCeeeecCCchhhcchhh
Confidence 999999876 668887653 23444334 4442112 5677787777789999998 677765 432
Q ss_pred hHHHHhhhhh-hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHH
Q 006746 550 DKYQKEKDNV-LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 606 (632)
Q Consensus 550 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l 606 (632)
... ... +.+ |... .....+.||+|++.++|.|||+++++.|
T Consensus 348 ~~~----~~~~~~~---~~~~---------~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 348 KYF----DYTVHNN---VDNA---------EYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TTC----EEEESSC---CHHH---------HHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcC----CCCCcCC---ChHH---------HHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 210 000 000 0000 0112358999999999999999999876
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=199.85 Aligned_cols=331 Identities=14% Similarity=0.060 Sum_probs=220.0
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
+..+||++...+..++.+++++.+.+... ...|+ .....+++++.+++++| +
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~~-------------------------~~~~~--~~~~~~~l~~~la~~~g-~ 58 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSGQ-------------------------AGPYG--TDELTAQVKRKFCEIFE-R 58 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSSC-------------------------CCSTT--CSHHHHHHHHHHHHHHT-S
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccCc-------------------------ccccc--cchHHHHHHHHHHHHhC-C
Confidence 45678888877888899999987643110 00122 13567899999999999 4
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhc--CCEEEEEeccCCccccCHHHHHH-H
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKR--GARVMSAEFSWPRLRINSEKLRK-M 262 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~--G~~v~~v~~~~~~~~i~~~~l~~-~ 262 (632)
+..|+||+|+|+|+.+++.++ .++||+|++.. .|.+ .... ..++.. |++++.++.+ ++.+++++|++ +
T Consensus 59 --~~~v~~~~~gt~a~~~al~~~-~~~gd~vi~~~~~~~~-~~~~--~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~ 130 (356)
T 1v72_A 59 --DVEVFLVPTGTAANALCLSAM-TPPWGNIYCHPASHIN-NDEC--GAPEFFSNGAKLMTVDGP--AAKLDIVRLRERT 130 (356)
T ss_dssp --CCEEEEESCHHHHHHHHHHTS-CCTTEEEEECTTSHHH-HSST--THHHHHTTSCEEEECCCG--GGCCCHHHHHHHT
T ss_pred --CCcEEEeCCccHHHHHHHHHh-cCCCCEEEEcCccchh-hhhc--hHHHHHhCCcEEEEecCC--CCeEcHHHHHHHh
Confidence 336999999999999999987 67899987654 4443 1211 012344 9999888875 46789999998 8
Q ss_pred HHhcC-cCCCceeEEEEeccCCCCcccc---chH-HHHHHhhCCcEEEEeccccC------CCCCCCCCCCCCCCcEEEE
Q 006746 263 VVSKG-KKKKQRGLFVFPLHSRMTGARY---PYL-WMRIAQENDWHILIDACALG------PKDMDSFGLSLVRPDFLIC 331 (632)
Q Consensus 263 i~~~~-~~~~~~~Lv~~~~~sn~TG~~~---pl~-i~~~a~~~g~~vlvDaaq~~------g~~m~~ldls~~~~Df~~~ 331 (632)
|++.. ....++++|++.+.+| ||..+ +++ |.++|+++|+++++|+++.. +.....+++ ..++|++++
T Consensus 131 i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~ 208 (356)
T 1v72_A 131 REKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTW-KAGVDALSF 208 (356)
T ss_dssp TSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTG-GGTCCEEEE
T ss_pred hhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhh-hhcCCEEEE
Confidence 86410 0112468999998766 99954 567 88999999999999998753 221111111 136899999
Q ss_pred ccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchh
Q 006746 332 SFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI 411 (632)
Q Consensus 332 S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~ 411 (632)
|+||+ |. |.|.|+++.+++.++.+..... ..|+..-
T Consensus 209 s~sK~-g~-~~G~g~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~------ 244 (356)
T 1v72_A 209 GATKN-GV-LAAEAIVLFNTSLATEMSYRRK------------------------------------RAGHLSS------ 244 (356)
T ss_dssp CCGGG-TC-SSCEEEEESSGGGHHHHHHHHH------------------------------------HTTCCCS------
T ss_pred ecccC-CC-cCccEEEEECHHHHhhHHHHhh------------------------------------ccCchhh------
Confidence 99999 65 8899999988776544321100 0010000
Q ss_pred hhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCC
Q 006746 412 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEG 491 (632)
Q Consensus 412 ~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G 491 (632)
+...+.. .+++.+.+-.+..+.++.+.+.++|.+.|.++
T Consensus 245 ----------~~~~~~~------------------------~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~------- 283 (356)
T 1v72_A 245 ----------KMRFLSA------------------------QIDAYLTDDLWLRNARKANAAAQRLAQGLEGL------- 283 (356)
T ss_dssp ----------STHHHHH------------------------HHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred ----------hHHHHHH------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC-------
Confidence 0001110 23333333224556778889999999999876
Q ss_pred CCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccc
Q 006746 492 NALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS 571 (632)
Q Consensus 492 ~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~ 571 (632)
+.++++.|. .+.++.+.+. .+.+++| .++||.++.|.+
T Consensus 284 -~g~~~~~~~----~~~~~~~~~~--------~~~~~~l-~~~gi~v~~g~~---------------------------- 321 (356)
T 1v72_A 284 -GGVEVLGGT----EANILFCRLD--------SAMIDAL-LKAGFGFYHDRW---------------------------- 321 (356)
T ss_dssp -TTEEEESCC----CSSEEEEEEC--------HHHHHHH-HHTTCBCBCSSS----------------------------
T ss_pred -CCcEEccCC----CccEEEEEcC--------HHHHHHH-HhcCeEEecccc----------------------------
Confidence 568887652 4566666543 2344444 567998876520
Q ss_pred cccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 572 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 572 ~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+.||+|+++.+|.+|++++++.|+++++.
T Consensus 322 ----------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 322 ----------GPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp ----------STTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred ----------CCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 1358999999999999999999999998754
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=212.04 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...++.|++|++++|++ ..|+|+ ++++|+.+++. + +++||+|++. ..|++ ....+...++..|++++.++.+
T Consensus 67 p~~~~l~~~la~~~g~~---~~i~~~-sG~~ai~~~~~-l-~~~gd~Vl~~~~~y~~-~~~~~~~~~~~~G~~v~~v~~~ 139 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK---YCLAFA-SGLAATVTITH-L-LKAGDQIICMDDVYGG-TNRYFRQVASEFGLKISFVDCS 139 (403)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEES-CHHHHHHHHHT-T-SCTTCEEEEESSCCHH-HHHHHHHTGGGGTCEEEEECTT
T ss_pred chHHHHHHHHHHHhCCC---cEEEEC-CHHHHHHHHHH-H-hCCCCEEEEeCCCcch-HHHHHHHHHHHcCCEEEEECCC
Confidence 34568999999999986 256666 55799999998 7 7899997755 56664 3443455567889999998764
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCC-cEEEEeccccCCCCCCCCCCCCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEND-WHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g-~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+.++|+++|+++ ++++.+.+.+|+||..+|++ |+++|+++| +++++|.++..+....+++ +++
T Consensus 140 ------d~~~l~~~i~~~------t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~---~~~ 204 (403)
T 3cog_A 140 ------KIKLLEAAITPE------TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLA---LGA 204 (403)
T ss_dssp ------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTT---TTC
T ss_pred ------CHHHHHHhcCcC------CeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccc---cCC
Confidence 678898888653 58999999999999999999 999999999 9999999998874213554 578
Q ss_pred cEEEEccccccCCCCCce--EEEEEeC-CCcccc
Q 006746 327 DFLICSFYQIFGENPSGF--GCLFVKK-STVPIL 357 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~--G~L~Vr~-~~~~~L 357 (632)
|+++.|++|++|. |.|+ |++++++ +.++.+
T Consensus 205 div~~S~sK~~~g-~~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 205 DISMYSATKYMNG-HSDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp SEEEEETTTTTTC-SSCCCCEEEEECCHHHHHHH
T ss_pred eEEEEcChhhccC-CCCCeEEEEEECcHHHHHHH
Confidence 9999999998875 7774 9998864 444433
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=203.10 Aligned_cols=294 Identities=8% Similarity=-0.010 Sum_probs=201.7
Q ss_pred HHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.++++++ ++++ .|+||+|+|+|+++++.++ .++||+|++ ...|++ ....++..|++++.++
T Consensus 62 ~lr~~la~~~~~~~~~~~~~~--~i~~t~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~-----~~~~~~~~g~~~~~~~ 133 (377)
T 3fdb_A 62 LLSQATAEFYADRYGYQARPE--WIFPIPDVVRGLYIAIDHF-TPAQSKVIVPTPAYPP-----FFHLLSATQREGIFID 133 (377)
T ss_dssp CHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SCTTCCEEEEESCCTH-----HHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCHH--HEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCcHh-----HHHHHHHcCCEEEEcc
Confidence 56777777766 6554 7999999999999999998 688999765 446654 1344567899999999
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----C-CCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----P-KDMD 317 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g-~~m~ 317 (632)
.+. + +++++|++++++++ +++++++.+|+||..+|.+ |+++|+++|+++++|.++.. | . .
T Consensus 134 ~~~-~--~d~~~l~~~l~~~~------~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~ 202 (377)
T 3fdb_A 134 ATG-G--INLHDVEKGFQAGA------RSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH--T 202 (377)
T ss_dssp CTT-S--CCHHHHHHHHHTTC------CEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCC--C
T ss_pred CCC-C--CCHHHHHHHhccCC------CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCC--C
Confidence 973 3 99999999998754 7999999999999999754 55669999999999999875 2 1 1
Q ss_pred CCCCC---CCCCcEEEEccccccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 318 SFGLS---LVRPDFLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 318 ~ldls---~~~~Df~~~S~hK~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
..++. ..+.++++.|++|.+|.+...+|++++. ++.++.+..... +
T Consensus 203 ~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-------------~----------------- 252 (377)
T 3fdb_A 203 VAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSP-------------V----------------- 252 (377)
T ss_dssp CGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCH-------------H-----------------
T ss_pred cccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHH-------------h-----------------
Confidence 22222 2344599999999998422236777763 344333321100 0
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.. ++.+.+...++. ++|+... ..++.+.++.+.+
T Consensus 253 -----~~----------------~~~~~~~~~a~~------------------------~~l~~~~-~~~~~~~~~~~~~ 286 (377)
T 3fdb_A 253 -----IK----------------DGASTLGLIAAE------------------------AAYRYGT-DFLNQEVAYLKNN 286 (377)
T ss_dssp -----HH----------------CCCCHHHHHHHH------------------------HHHHHCH-HHHHHHHHHHHHH
T ss_pred -----hc----------------CCCCHHHHHHHH------------------------HHHhccH-HHHHHHHHHHHHH
Confidence 00 011111222221 4444322 2367888899999
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
.++|.+.|.++ .|.++++.|. .+.++.+.+.+. + ++.+.++++++++||.++.|..|...
T Consensus 287 ~~~l~~~L~~~-------~~~~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~l~~~~gi~v~~g~~~~~~------ 346 (377)
T 3fdb_A 287 HDFLLHEIPKR-------IPGAKITPMQ----ATYLMWIDFRDT-T--IEGSPSEFFIEKAKVAMNDGAWFGED------ 346 (377)
T ss_dssp HHHHHHHHHHH-------STTCEECCCS----BCSEEEEECTTS-C--CCSCHHHHHHHHHCEECEEGGGGCGG------
T ss_pred HHHHHHHHHhh-------CCCceEecCC----eeEEEEEECccc-C--CCHHHHHHHHHhCCEEecCChhccCC------
Confidence 99999999883 2667777653 233445666542 1 34456778888889999988655431
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+.||+|++ ++.|||+++++.|+++++.
T Consensus 347 ----------------------------~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 347 ----------------------------GTGFCRLNFA--TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp ----------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 2469999998 4899999999999988753
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-21 Score=205.19 Aligned_cols=348 Identities=12% Similarity=0.026 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
++.+++++.+++++|++ .++|++|+|+|+.+++.++.+++||+|++ ...|++ . ...++..|++++.++++
T Consensus 42 ~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~~~~~ 112 (418)
T 2c81_A 42 SMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIA-T----ATAVLNVNALPVFVDVE 112 (418)
T ss_dssp CHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHh-H----HHHHHHcCCEEEEEecC
Confidence 56789999999999986 47889999999999999997789999765 457765 2 23456789999999987
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
..++.+|+++|+++|+++ +++|++ +|+||...|++ |.++|+++|+++++|+++..+.....-.+..+ .|
T Consensus 113 ~~~~~~d~~~l~~~i~~~------~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~ 182 (418)
T 2c81_A 113 ADTYCIDPQLIKSAITDK------TKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTI-GD 182 (418)
T ss_dssp TTTCSBCHHHHGGGCCTT------EEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SS
T ss_pred CCCCCcCHHHHHHhhCCC------CeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccc-cc
Confidence 446789999998888653 477765 45899999999 99999999999999999988751010011112 36
Q ss_pred EEEEcc--ccccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh--ccc
Q 006746 328 FLICSF--YQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV--AAT 402 (632)
Q Consensus 328 f~~~S~--hK~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e--~gt 402 (632)
+.+.|+ ||++| +...|+++.+ ++.++.+.+...+|.... .. .+... ..+ + .++
T Consensus 183 ~~~~s~s~~K~~~--~g~~g~~~~~~~~l~~~~~~~~~~~~~~~--~~--~~~~~-------------~~~---~~~~~~ 240 (418)
T 2c81_A 183 IGAFSCQQGKVLT--AGEGGIIVTKNPRLFELIQQLRADSRVYC--DD--SSELM-------------HGD---MQLVKK 240 (418)
T ss_dssp EEEEECCTTSSSC--SSSCEEEEESCHHHHHHHHHHHBTTEEEC--SC--GGGCC-------------TTC---BSEEEC
T ss_pred eEEEeccCCcccC--CCCeEEEEECCHHHHHHHHHHHHhCcccc--cc--ccccc-------------cch---hhcccc
Confidence 666766 99999 5345666664 355555543222222110 00 00000 000 0 111
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
..+.+.- ... ..+ ..++......+++.+.+|.+.+.++|.+.|.
T Consensus 241 ~~~~g~~---------~~~---~~~------------------------~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~ 284 (418)
T 2c81_A 241 GDIQGSN---------YCL---SEF------------------------QSAILLDQLQELDDKNAIREKNAMFLNDALS 284 (418)
T ss_dssp CSSCCCB---------CCC---CHH------------------------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCcC---------CCc---CHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111100 000 001 1333333333678889999999999999998
Q ss_pred ccCCCCCCCCCcEEEECCCCC-CCCC-cEEEEEEccCCCCccCHHHHHHHHHhC-CcE---EccCccCChHHHhHHHHh-
Q 006746 483 KLQHPNTEGNALVKIYGPKIR-FDRG-PALAFNVFDWKREKIEPVLVQKLADRE-NIS---LSYGSLHHIWFSDKYQKE- 555 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~-~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~-gI~---lr~G~~c~~~~~~~~~~~- 555 (632)
++ |.++++++... .... .+++|.+.+.....++...+.+.+.++ ||. ++.|+.|.... ..+...
T Consensus 285 ~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~-~~~~~~~ 355 (418)
T 2c81_A 285 KI--------DGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKN-PLFCPWT 355 (418)
T ss_dssp TS--------TTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGC-TTCCGGG
T ss_pred cC--------CCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccC-chhcccc
Confidence 76 67888865321 1123 477787763100115666676666566 999 99887442110 000000
Q ss_pred hhh-------hhhhh--hccccccccccccccCCCCCcEEEEccCCCC-CHHHHHHHHHHHHHhhhh
Q 006746 556 KDN-------VLEKT--DREAKSKSDNNRKDKANLGITVVTASLGYLA-NFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~-------~l~~~--~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~-t~eDV~rlv~~l~~~l~~ 612 (632)
... .++.. ..+... .....++||+|++.++ |.|||+++++.|++++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 356 KNRYLKSVRKTEAYWRGLHYPVS---------ERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp CTTSCHHHHCCHHHHHTCCCHHH---------HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccCCChHH---------HHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 000 00000 000000 0011369999999999 999999999999998753
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=207.93 Aligned_cols=317 Identities=11% Similarity=0.048 Sum_probs=205.7
Q ss_pred HHHHHHHHHc----CCCCCCc-cEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDFL----NISENDY-GMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey-~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.+++++ |.+.+.. .|+||+|+|+|+.+++.++ .++||+|++ ...|++ . ...++..|++++.++.
T Consensus 66 ~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~-~~~gd~Vl~~~~~y~~-~----~~~~~~~g~~~~~v~~ 139 (411)
T 2o0r_A 66 PLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL-VEPGSEVLLIEPFYDS-Y----SPVVAMAGAHRVTVPL 139 (411)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCcHh-H----HHHHHHcCCEEEEeec
Confidence 4566666655 7543333 6999999999999999998 688999765 456764 2 2345678999999998
Q ss_pred cCC--ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccCCC----CCC
Q 006746 248 SWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALGPK----DMD 317 (632)
Q Consensus 248 ~~~--~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~g~----~m~ 317 (632)
+.. ++.+++++|+++|+++ ++++++++.+|+||..+|. + |+++|+++|+++++|.++.... ...
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 213 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAVTPR------TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHL 213 (411)
T ss_dssp EEETTEEECCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCC
T ss_pred cccccCCCCCHHHHHHhhccC------ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 632 3568999999988643 5899999999999999985 6 8899999999999999987532 001
Q ss_pred CC-CCC-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 318 SF-GLS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 318 ~l-dls-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
++ .+. ..+.|+++.|++|.+| +.| +|+++++++.++.+....
T Consensus 214 ~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~-------------------------------- 259 (411)
T 2o0r_A 214 PLAGFDGMAERTITISSAAKMFN--CTGWKIGWACGPAELIAGVRAAK-------------------------------- 259 (411)
T ss_dssp CGGGSTTTGGGEEEEEEHHHHTT--CTTTCEEEEECCHHHHHHHHHHH--------------------------------
T ss_pred ChhhccCCCCCEEEEeechhhcC--CccceEEEEeeCHHHHHHHHHHH--------------------------------
Confidence 11 121 2578999999999999 558 899998876654332210
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.. ...+ .+.+...++. .+|+.. ...++.+.++.+.+
T Consensus 260 ~~---~~~~----------------~~~~~~~a~~------------------------~~l~~~-~~~~~~~~~~~~~~ 295 (411)
T 2o0r_A 260 QY---LSYV----------------GGAPFQPAVA------------------------LALDTE-DAWVAALRNSLRAR 295 (411)
T ss_dssp HH---HTSC----------------CCTTHHHHHH------------------------HHHHHC-HHHHHHHHHHHHHH
T ss_pred hh---ccCC----------------CChHHHHHHH------------------------HHHhCC-hHHHHHHHHHHHHH
Confidence 00 0000 0111112222 455433 22467888999999
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
.++|.+.|.++ | ++++.|. .+..+.+.+.+..+ ++...+ +++++++||.++.|..|........
T Consensus 296 ~~~l~~~L~~~------g---~~~~~~~----~g~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~ 360 (411)
T 2o0r_A 296 RDRLAAGLTEI------G---FAVHDSY----GTYFLCADPRPLGY--DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQA 360 (411)
T ss_dssp HHHHHHHHHHH------T---CEECCCC----BSSEEEEECGGGTC--CCHHHHHHHHHHHHSEECEEGGGGSCCC----
T ss_pred HHHHHHHHHHc------C---CEecCCC----eeEEEEEecCCCCC--CCHHHHHHHHHHhCCEEEcChhhhCCCccccc
Confidence 99999999887 3 4555542 34577777765211 344444 4566778999988765532100000
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhcccccccce
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWR 621 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~f~~~~~~~ 621 (632)
..+ ...+.+.||+|++ ++.+||+++++.|+++++.. -.+-+|-
T Consensus 361 -----~~~------------------~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~-~~~~~~~ 403 (411)
T 2o0r_A 361 -----SQQ------------------ADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERP-ATGVPRG 403 (411)
T ss_dssp ---------------------------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC----------
T ss_pred -----ccc------------------ccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhcc-CcCCCcc
Confidence 000 0113468999987 48999999999999987653 3344553
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-21 Score=202.66 Aligned_cols=334 Identities=11% Similarity=0.052 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+.+.|++|++++|++ +.|++| |+|+|+++++.++..++||+|++ ...|++ . ...++..|++++.++++
T Consensus 38 ~~~~~l~~~la~~~~~~---~~i~~~-sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~-~----~~~~~~~g~~~~~v~~~ 108 (388)
T 1b9h_A 38 DEVNSFEREFAAHHGAA---HALAVT-NGTHALELALQVMGVGPGTEVIVPAFTFIS-S----SQAAQRLGAVTVPVDVD 108 (388)
T ss_dssp SHHHHHHHHHHHHTTCS---EEEEES-CHHHHHHHHHHHTTCCTTCEEEEESSSCTH-H----HHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHhCCC---eEEEeC-CHHHHHHHHHHHcCCCCcCEEEECCCccHH-H----HHHHHHcCCEEEEEecC
Confidence 45678999999999986 256555 55999999999987788999765 567775 2 23456789999999998
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC-C
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR-P 326 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~-~ 326 (632)
..++.+|+++|+++|+++ +++|+ .+|.||...|++ |.++|+++|+++++|++|+.|......++..++ +
T Consensus 109 ~~~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i 179 (388)
T 1b9h_A 109 AATYNLDPEAVAAAVTPR------TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSI 179 (388)
T ss_dssp TTTCCBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSC
T ss_pred CCcCCCCHHHHHHhcCcC------ceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccce
Confidence 545779999999988653 46666 678899999999 999999999999999999876521113344444 5
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCCc---cccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcccc
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKSTV---PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 403 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~~---~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~ 403 (632)
++..+|.||+++. + ..|+++.+++.+ +.+.....+|... . .| .++ ....|+.
T Consensus 180 ~~~S~s~~K~l~g-~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~--------~~~---------~~~~g~~ 234 (388)
T 1b9h_A 180 ATFSFQNGKLMTA-G-EGGAVVFPDGETEKYETAFLRHSCGRPR-----D-DR--------RYF---------HKIAGSN 234 (388)
T ss_dssp EEEECCTTSSSCS-S-SCEEEEECTTCHHHHHHHHHHTBTTCCT-----T-CS--------SCC---------CCSCCCB
T ss_pred EEEEccCCCcccC-C-CeEEEEECCHHHHHHHHHHHHHhCCCCc-----c-Cc--------cce---------eeccccc
Confidence 5566666787762 4 458888777633 3332111111100 0 00 000 0001221
Q ss_pred CCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Q 006746 404 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK 483 (632)
Q Consensus 404 ~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~ 483 (632)
.-. +...+..+. .+++ -++...++.+.+.+++.+.|.+
T Consensus 235 ~~~-------------~~~~~a~~~------------------------~~~~-----~l~~~~~~~~~~~~~l~~~L~~ 272 (388)
T 1b9h_A 235 MRL-------------NEFSASVLR------------------------AQLA-----RLDEQIAVRDERWTLLSRLLGA 272 (388)
T ss_dssp CBC-------------BHHHHHHHH------------------------HHHT-----THHHHHHHHHHHHHHHHHHHHT
T ss_pred CCc-------------CHHHHHHHH------------------------HHHH-----HHHHHHHHHHHHHHHHHHHhcc
Confidence 000 000011111 2222 2455667788889999999988
Q ss_pred cCCCCCCCCCcEEEECCCCC--CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh------
Q 006746 484 LQHPNTEGNALVKIYGPKIR--FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE------ 555 (632)
Q Consensus 484 l~h~~~~G~p~v~Iygp~~~--~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~------ 555 (632)
+ |.++++++... ...+.++.|.+.+..+ .+...+.+.+.++||.++.|+..... ...+...
T Consensus 273 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~-~~~~~~~~~~~~~ 341 (388)
T 1b9h_A 273 I--------DGVVPQGGDVRADRNSHYMAMFRIPGLTE--ERRNALVDRLVEAGLPAFAAFRAIYR-TDAFWELGAPDES 341 (388)
T ss_dssp S--------TTCEECCCCTTCCBCCCSEEEEECTTCCH--HHHHHHHHHHHHTTCCEEECCCCGGG-SHHHHHSSCCSSC
T ss_pred C--------CCccccCCCcCCCccceEEEEEEeCCcCc--ccHHHHHHHHHHCCCCcccccCcccc-ChHhHhcCCCccc
Confidence 6 55778775321 1235788888765210 13455655556689999987532110 0001000
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCC-CHHHHHHHHHHHHHhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLA-NFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~-t~eDV~rlv~~l~~~l~ 611 (632)
...... .|... .....+.||+|++..+ |.|||+++++.|+++++
T Consensus 342 ~~~~~~---~~~~~---------~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 342 VDAIAR---RCPNT---------DAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 386 (388)
T ss_dssp HHHHHH---TCHHH---------HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred cccccc---CCHHH---------HHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 000000 00000 0012358999999999 99999999999999875
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-21 Score=208.28 Aligned_cols=303 Identities=10% Similarity=0.038 Sum_probs=205.6
Q ss_pred HHHHHHHHHHcC-----CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 173 SAMKKRIMDFLN-----ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 173 ~~~R~~ia~~l~-----a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+.|+.++++++ ++++ .|+||+|+|+|+.+++..+ .++||+|++. ..|++ ....++..|++++.++
T Consensus 99 ~~lr~~la~~~~~~~~~~~~~--~v~~t~g~t~al~~~~~~l-~~~gd~vl~~~p~~~~-----~~~~~~~~g~~~~~~~ 170 (427)
T 3dyd_A 99 LSSREEIASYYHCPEAPLEAK--DVILTSGCSQAIDLCLAVL-ANPGQNILVPRPGFSL-----YKTLAESMGIEVKLYN 170 (427)
T ss_dssp HHHHHHHHHHHCBTTBCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTH-----HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCChH--HEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCchh-----HHHHHHHcCCEEEEEe
Confidence 478999999999 6654 7999999999999999998 5789997654 45542 2345677899999998
Q ss_pred ccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
.+. .+..+++++|++.++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++.. +. .
T Consensus 171 ~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~ 242 (427)
T 3dyd_A 171 LLPEKSWEIDLKQLEYLIDEK------TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--K 242 (427)
T ss_dssp EEGGGTTEECHHHHHSSCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--C
T ss_pred cccccCCCCCHHHHHHHhccC------CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--c
Confidence 863 24468999998887653 588999999999999999 88 89999999999999998765 22 1
Q ss_pred CCCCCCCCCc---EEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 318 SFGLSLVRPD---FLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 318 ~ldls~~~~D---f~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
...+..+..| +++.|++|.||. .| +|++++++... .+.+....
T Consensus 243 ~~~~~~~~~~~~vi~~~S~sK~~~~--~G~riG~~~~~~~~~-~~~~~i~~----------------------------- 290 (427)
T 3dyd_A 243 YEPLATLSTDVPILSCGGLAKRWLV--PGWRLGWILIHDRRD-IFGNEIRD----------------------------- 290 (427)
T ss_dssp CCCGGGGCSSCCEEEEEESTTTSSC--GGGCCEEEEEECSTT-SSHHHHHH-----------------------------
T ss_pred CccHHHhCCCCcEEEEeeccccCCC--cCcceEEEEecCcch-hhHHHHHH-----------------------------
Confidence 2233333333 677899999884 36 79999886421 11100000
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC 472 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~ 472 (632)
.+...... ..+++.....++. ++|+......++.+.++++.
T Consensus 291 -~l~~~~~~--------------~~~~~~~~~~a~~------------------------~~L~~~~~~~~~~~~~~~~~ 331 (427)
T 3dyd_A 291 -GLVKLSQR--------------ILGPCTIVQGALK------------------------SILCRTPGEFYHNTLSFLKS 331 (427)
T ss_dssp -HHHHHHHH--------------HCCSCHHHHHHHH------------------------HHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHhc--------------cCCCCHHHHHHHH------------------------HHHHhcCHHHHHHHHHHHHH
Confidence 00000000 0111222222222 44443223346778888999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccC-CCCccC-HHHHHHHHHhCCcEEccCccCChHHHh
Q 006746 473 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDW-KREKIE-PVLVQKLADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 473 L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~-~G~~i~-~~~V~kla~~~gI~lr~G~~c~~~~~~ 550 (632)
+.++|++.|.++ |.++++.|. .+..+.+.+... -....+ .+.++++++++||.++.|..|.
T Consensus 332 ~~~~l~~~L~~~--------~g~~~~~p~----~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~----- 394 (427)
T 3dyd_A 332 NADLCYGALAAI--------PGLRPVRPS----GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE----- 394 (427)
T ss_dssp HHHHHHHHHHHS--------TTEEEECCS----BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-----
T ss_pred HHHHHHHHHhcC--------CCceecCCC----eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC-----
Confidence 999999999987 668877663 344555555421 000123 3455677778899998764322
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.+|+|++ ++.++|+++++.|++++..
T Consensus 395 -------------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 395 -------------------------------YPNFIRVVIT--VPEVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp -------------------------------CTTEEEEESC--SCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCeEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 1359999987 7999999999999998754
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=204.26 Aligned_cols=325 Identities=12% Similarity=0.084 Sum_probs=215.0
Q ss_pred CCceEeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcC-
Q 006746 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN- 184 (632)
Q Consensus 107 ~~~vyLD~ag~gl-~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~- 184 (632)
++.++|+.+...+ .|+.+.+++.+.+.... ..|+.. .-..+.|+.|+++++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------------------------~~y~~~--~~~~~l~~~la~~~~~ 81 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-------------------------THYTDS--RGILELREKISELYKD 81 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-------------------------CSCCCT--TCCHHHHHHHHHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-------------------------cCCCCC--CCCHHHHHHHHHHHHH
Confidence 4567888776654 47778887655332100 001100 112367777777764
Q ss_pred -----CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHH
Q 006746 185 -----ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEK 258 (632)
Q Consensus 185 -----a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~ 258 (632)
++++ .|++|+|+|+|+.+++.++ +++||+|++. ..|++ + ...++..|++++.++ +|.++
T Consensus 82 ~~g~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~--~---~~~~~~~g~~~~~v~-------~d~~~ 146 (370)
T 2z61_A 82 KYKADIIPD--NIIITGGSSLGLFFALSSI-IDDGDEVLIQNPCYPC--Y---KNFIRFLGAKPVFCD-------FTVES 146 (370)
T ss_dssp HSSCCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCTH--H---HHHHHHTTCEEEEEC-------SSHHH
T ss_pred HhCCCCChh--hEEECCChHHHHHHHHHHh-cCCCCEEEEeCCCchh--H---HHHHHHcCCEEEEeC-------CCHHH
Confidence 4443 7999999999999999998 7889997654 56664 2 334567899998876 57889
Q ss_pred HHHHHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCC-CCCCCC----CCCCcEEEEcc
Q 006746 259 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDM-DSFGLS----LVRPDFLICSF 333 (632)
Q Consensus 259 l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m-~~ldls----~~~~Df~~~S~ 333 (632)
|+++++++ ++++++++.+|+||..+|++|.++|+++|+++++|.++..+..- .+.++. ..+.|+++.|+
T Consensus 147 l~~~l~~~------~~~v~~~~p~nptG~~~~~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~ 220 (370)
T 2z61_A 147 LEEALSDK------TKAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGF 220 (370)
T ss_dssp HHHHCCSS------EEEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEES
T ss_pred HHHhcccC------ceEEEEcCCCCCcCcccCHHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecC
Confidence 98888643 58899999999999999999889999999999999998764310 012222 34679999999
Q ss_pred ccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchh
Q 006746 334 YQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI 411 (632)
Q Consensus 334 hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~ 411 (632)
+|++| +.| +|+++++++.++.+.....+ | .
T Consensus 221 sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~~------------~-----------------------~----------- 252 (370)
T 2z61_A 221 SKLYA--MTGWRIGYVISNDEIIEAILKLQQN------------L-----------------------F----------- 252 (370)
T ss_dssp TTTTT--CGGGCCEEEECCHHHHHHHHHHHHH------------H-----------------------T-----------
T ss_pred hhccC--CccceEEEEEECHHHHHHHHHHHhh------------c-----------------------c-----------
Confidence 99999 558 89999888665444321000 0 0
Q ss_pred hhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCC
Q 006746 412 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEG 491 (632)
Q Consensus 412 ~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G 491 (632)
++.+.+...++. ++|+.+....++.+.++.+.+.+++.+.|.++ |
T Consensus 253 -----~~~~~~~~~a~~------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g 297 (370)
T 2z61_A 253 -----ISAPTISQYAAL------------------------KAFEKETEREINSMIKEFDRRRRLVLKYVKDF------G 297 (370)
T ss_dssp -----SSSCHHHHHHHG------------------------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T
T ss_pred -----cCCCHHHHHHHH------------------------HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc------C
Confidence 011111122222 44543112346778888999999999999886 3
Q ss_pred CCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccc
Q 006746 492 NALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 570 (632)
Q Consensus 492 ~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 570 (632)
++++.|. .+..+.+.+.+ +...+ +++++++||.++.|..|..
T Consensus 298 ---~~~~~~~----~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~f~~------------------------ 340 (370)
T 2z61_A 298 ---WEVNNPI----GAYYVFPNIGE------DGREFAYKLLKEKFVALTPGIGFGS------------------------ 340 (370)
T ss_dssp ---CBCCCCC----BTTEECCBCSS------CHHHHHHHHHHHHCEECEEGGGGCG------------------------
T ss_pred ---CeecCCC----cceEEEEecCC------CHHHHHHHHHHhCCEEEeCchhhCC------------------------
Confidence 2333332 23333334432 34444 4555578999987744321
Q ss_pred ccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 571 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 571 ~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+.+.||+|++ ++.+||+++++.|+++++
T Consensus 341 ----------~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 341 ----------KGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp ----------GGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred ----------CCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 02358999999 799999999999998864
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-20 Score=203.14 Aligned_cols=306 Identities=9% Similarity=0.036 Sum_probs=206.0
Q ss_pred HHHHHHHHHc----CCCCCCc-cEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDFL----NISENDY-GMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey-~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.+++++ |.+.+.. .|+||+|+|+|+.+++.++ .++||+|++. ..|++ . ...++..|++++.++.
T Consensus 81 ~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~~~~ 154 (429)
T 1yiz_A 81 RLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-VDEGDEVIIIEPFFDC-Y----EPMVKAAGGIPRFIPL 154 (429)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEEeC
Confidence 5566666664 7543333 6999999999999999998 6789997654 46664 2 2345678999999998
Q ss_pred cCC---------ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC--
Q 006746 248 SWP---------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG-- 312 (632)
Q Consensus 248 ~~~---------~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~-- 312 (632)
+.. ++.+++++|++++++ +++++++++.+|+||..+| ++ |+++|+++|+++++|.++..
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 228 (429)
T 1yiz_A 155 KPNKTGGTISSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMV 228 (429)
T ss_dssp BCCCSSSSEEGGGCBCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred CcccccccccccCcccCHHHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccc
Confidence 743 346899999998864 3588999999999999996 77 89999999999999999874
Q ss_pred --CCCCCCC-CCC-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCC
Q 006746 313 --PKDMDSF-GLS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 313 --g~~m~~l-dls-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
+....++ .+. ..+.|+++.|++|.|| +.| +|++++++++++.+......
T Consensus 229 ~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~----------------------- 283 (429)
T 1yiz_A 229 FEPFEHIRICTLPGMWERTITIGSAGKTFS--LTGWKIGWAYGPEALLKNLQMVHQN----------------------- 283 (429)
T ss_dssp CTTSCCCCGGGSTTTGGGEEEEEEHHHHHT--CGGGCCEEEESCHHHHHHHHHHHHT-----------------------
T ss_pred cCCCCCcChhhccCCcCceEEEecchhccC--CCCcceEEEEeCHHHHHHHHHHHhh-----------------------
Confidence 2111122 222 4578999999999999 668 89999987765444221000
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHH-----HH-h
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ-----VD-S 460 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~-----~~-~ 460 (632)
. . .+.+.+...++. ++|+. .. .
T Consensus 284 --------------~--~------------~~~~~~~~~a~~------------------------~~l~~~~~~~~~~~ 311 (429)
T 1yiz_A 284 --------------C--V------------YTCATPIQEAIA------------------------VGFETELKRLKSPE 311 (429)
T ss_dssp --------------T--T------------CCCCHHHHHHHH------------------------HHHHHHHTTTTSTT
T ss_pred --------------c--c------------cCCChHHHHHHH------------------------HHHhcccccccchH
Confidence 0 0 001111112222 45544 10 1
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC--------CccCHHH-HHHHH
Q 006746 461 LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR--------EKIEPVL-VQKLA 531 (632)
Q Consensus 461 ~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G--------~~i~~~~-V~kla 531 (632)
-.++.+.++.+.+.++|.+.|.++ | ++++.|. .+..+.+.+.+... ...+... +++++
T Consensus 312 ~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (429)
T 1yiz_A 312 CYFNSISGELMAKRDYMASFLAEV------G---MNPTVPQ----GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMT 378 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH------T---CEEEECS----BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------C---CcccCCC----cceEEEEEcccccccccccccccCCCHHHHHHHHH
Confidence 127788899999999999999987 4 3455442 35577777764210 0123344 45567
Q ss_pred HhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 532 DRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 532 ~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+++||.++.|..|..... ...+.+.||+|++ ++.+||+++++.|+++++
T Consensus 379 ~~~gv~v~~g~~f~~~~~-----------------------------~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 379 KSVGLQGIPPSAFYSEPN-----------------------------KHLGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp HHTSEECBCGGGGSCGGG-----------------------------GGGTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred HhCCEEEeCchHhCCCcc-----------------------------cCCCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 789999987743321100 0012469999998 489999999999999876
Q ss_pred h
Q 006746 612 A 612 (632)
Q Consensus 612 ~ 612 (632)
+
T Consensus 428 ~ 428 (429)
T 1yiz_A 428 S 428 (429)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=203.12 Aligned_cols=168 Identities=8% Similarity=0.045 Sum_probs=137.1
Q ss_pred ccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcC
Q 006746 161 QLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 161 ~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G 239 (632)
.+.|+.......++.|++|++++|++ .++|++|+|+|+++++.++ +++||+|++. ..|++ ....+....+..|
T Consensus 57 ~~~y~r~~~~~~~~l~~~la~~~g~~----~~~~~~sGt~A~~~al~~~-~~~gd~Vi~~~~~y~~-~~~~~~~~~~~~g 130 (392)
T 3qhx_A 57 GYEYARTGNPTRTALEAALAAVEDAA----FGRAFSSGMAAADCALRAM-LRPGDHVVIPDDAYGG-TFRLIDKVFTGWN 130 (392)
T ss_dssp TBCBTTTCCHHHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHHHHHTGGGGT
T ss_pred CccccCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCcch-HHHHHHHHHHhcC
Confidence 45566666678889999999999986 4889999999999999988 7899997755 56664 3444445557789
Q ss_pred CEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC
Q 006746 240 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS 318 (632)
Q Consensus 240 ~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ 318 (632)
++++.++.+ ++++|+++|+++ +++|.+...+|+||...|++ |.++|+++|+++++|.++..+....+
T Consensus 131 ~~~~~v~~~------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~ 198 (392)
T 3qhx_A 131 VEYTPVALA------DLDAVRAAIRPT------TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQP 198 (392)
T ss_dssp CEEEEECTT------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCG
T ss_pred cEEEEeCCC------CHHHHHHhhCCC------CeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCCh
Confidence 999999864 788999988754 58999999999999999999 99999999999999999887652223
Q ss_pred CCCCCCCCcEEEEccccccCCCCCc---eEEEEEeC
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKK 351 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G---~G~L~Vr~ 351 (632)
+ .+++|+++.|+||++| |.| .|+++.++
T Consensus 199 ~---~~~~di~~~S~sK~lg--~~g~~~~G~v~~~~ 229 (392)
T 3qhx_A 199 L---SLGADVVLHSTTKYIG--GHSDVVGGALVTND 229 (392)
T ss_dssp G---GGTCSEEEEETTTTTT--CSSCCCCEEEEESC
T ss_pred H---HhCCcEEEEcCccccC--CCCCceEEEEEECc
Confidence 3 4689999999999999 555 78887774
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=222.79 Aligned_cols=320 Identities=11% Similarity=0.027 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+.+.++.+++++|++. .+++++++|+|+++++.++ .++||+|+++ ..|+| .... ++..|+++++++.+
T Consensus 205 g~v~~~ee~la~l~G~d~---~i~~~~Gtt~a~~~~i~al-~~~GD~Vlv~~~~h~s-~~~~----~~~~G~~~v~v~~~ 275 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKS-IEQG----LMLTGAKPVYMVPS 275 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHH-HHHH----HHHHCCEEEEECCC
T ss_pred cHHHHHHHHHHHHhCCCc---eEEECCcHHHHHHHHHHHh-cCCCCEEEECCCchHH-HHHH----HHHcCCEEEEEeCC
Confidence 567799999999999962 5788888889999999998 7899998765 46665 3332 34579999999875
Q ss_pred CCc----ccc-----CHHHHHHHHHhc--Cc--CCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC
Q 006746 249 WPR----LRI-----NSEKLRKMVVSK--GK--KKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK 314 (632)
Q Consensus 249 ~~~----~~i-----~~~~l~~~i~~~--~~--~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~ 314 (632)
..+ +.+ +.++|+++|+++ ++ ...+++++++++. |.+|..+|++ |+++|+++|+++++|+|+....
T Consensus 276 ~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 276 RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp BCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred CCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhc
Confidence 321 335 999999999763 21 1223468888884 7999999999 9999999999999999986532
Q ss_pred CCCCC--CCCC-CC--CcE------EEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 315 DMDSF--GLSL-VR--PDF------LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 315 ~m~~l--dls~-~~--~Df------~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
...+. +.+. .+ +|+ ++.|+||+++. |.|.|+++++++.. .+.. .. + .
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~-~i~~-------------~~-~--~---- 412 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRG-AINF-------------SR-F--N---- 412 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBT-CCCH-------------HH-H--H----
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCccc-ccCH-------------HH-H--H----
Confidence 11111 1222 34 576 99999997764 88899999988710 0100 00 0 0
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 463 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl 463 (632)
..+. ..+.++++++.+.++. .|++++...|.
T Consensus 413 ---------~~~~----------------~~~s~sp~~~~iaal~------------------------aA~~~l~~~gg 443 (755)
T 2vyc_A 413 ---------QAYM----------------MHATTSPLYAICASND------------------------VAVSMMDGNSG 443 (755)
T ss_dssp ---------HHHH----------------HTSCSSCCHHHHHHHH------------------------HHHHHHSTHHH
T ss_pred ---------HHHH----------------HhCCCCHHHHHHHHHH------------------------HHHHHHHhhhH
Confidence 0000 0124567777788887 88888876656
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCC--CCCCCCcEEEECCCCCCC------------------------------------
Q 006746 464 TMISRRGRCLINWLVNALMKLQHP--NTEGNALVKIYGPKIRFD------------------------------------ 505 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~--~~~G~p~v~Iygp~~~~~------------------------------------ 505 (632)
..+.++...++.+++++|.++... +. +.-.+++|+|.....
T Consensus 444 ~~~~~~~~~~a~~~r~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 522 (755)
T 2vyc_A 444 LSLTQEVIDEAVDFRQAMARLYKEFTAD-GSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFK 522 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc-ccceeeccCchhccccccccccccccccchhccchhhhhccCccccccccc
Confidence 778899999999999999988210 00 001288888752100
Q ss_pred ---C------CcEEEEEEcc--CCCC----ccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccc
Q 006746 506 ---R------GPALAFNVFD--WKRE----KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 570 (632)
Q Consensus 506 ---r------g~ivaFnv~~--~~G~----~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 570 (632)
. ...|+|++.+ .+|+ -+++..+.+.++++||.+..
T Consensus 523 ~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~------------------------------ 572 (755)
T 2vyc_A 523 DIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTR------------------------------ 572 (755)
T ss_dssp TCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSE------------------------------
T ss_pred ccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEee------------------------------
Confidence 1 2478898874 3442 37888999888888987641
Q ss_pred ccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 571 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 571 ~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+.||+++++.+|.+|+++|+++|++|..
T Consensus 573 ----------~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 573 ----------TTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp ----------ECSSEEEEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred ----------cCCCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 1346999999999999999999999999864
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-20 Score=194.44 Aligned_cols=285 Identities=13% Similarity=0.147 Sum_probs=200.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|++++++++++++ .|+||+|+|+|+++++.++ |+|++ ...|++ ....++..|++++.++.+ +.
T Consensus 64 ~~l~~~la~~~~~~~~--~i~~~~g~t~al~~~~~~~-----d~vi~~~~~~~~-----~~~~~~~~g~~~~~~~~~-~~ 130 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDI--GIVLGNGASEIIELSISLF-----EKILIIVPSYAE-----YEINAKKHGVSVVFSYLD-EN 130 (361)
T ss_dssp HHHHHHHHHHHTCCSC--EEEEESSHHHHHHHHHTTC-----SEEEEEESCCTH-----HHHHHHHTTCEEEEEECC-TT
T ss_pred HHHHHHHHHHhCCCcc--eEEEcCCHHHHHHHHHHHc-----CcEEEecCChHH-----HHHHHHHcCCeEEEeecC-cc
Confidence 5889999999999876 7999999999999999998 78664 455653 234567789999999998 45
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCC---CCCCCC-CC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKD---MDSFGL-SL 323 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~---m~~ldl-s~ 323 (632)
+.++++++++++++ + +++++++.+|+||..+|.+ |+++|+++|+++++|.++..... ...+.+ ..
T Consensus 131 ~~~~~~~l~~~l~~-~------~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 203 (361)
T 3ftb_A 131 MCIDYEDIISKIDD-V------DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKN 203 (361)
T ss_dssp SCCCHHHHHHHTTT-C------SEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTT
T ss_pred cCCCHHHHHHhccC-C------CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhccc
Confidence 56888999988875 4 8999999999999999854 56677799999999998763210 011111 12
Q ss_pred CCCcEEEEccccccCCCCCceEEEE-EeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccc
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLF-VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 402 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~-Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt 402 (632)
.+.++++.|++|.+|.+..++|+++ .+++.++.+..... .|
T Consensus 204 ~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~------------~~-------------------------- 245 (361)
T 3ftb_A 204 YSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN------------PW-------------------------- 245 (361)
T ss_dssp CSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC------------TT--------------------------
T ss_pred CCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC------------CC--------------------------
Confidence 3445888899999983223357777 44444333322100 00
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
+++.+...++. ++|+. ...++.+.++.+.+.+++.+.|.
T Consensus 246 ---------------~~~~~~~~~~~------------------------~~l~~--~~~~~~~~~~~~~~~~~l~~~l~ 284 (361)
T 3ftb_A 246 ---------------NINCFAEMAAI------------------------NCLKD--TNYIEESLLWIKKERKRFIEELN 284 (361)
T ss_dssp ---------------CSCHHHHHHHH------------------------HTSSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHH------------------------HHhcC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111122222 34432 12467888999999999999998
Q ss_pred ccCCCCCCCCCcEE-EECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhh
Q 006746 483 KLQHPNTEGNALVK-IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE 561 (632)
Q Consensus 483 ~l~h~~~~G~p~v~-Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~ 561 (632)
++ |.++ ++.+ .++.+.+.+.+ .+...+.+.+.++||.++.|..|..
T Consensus 285 ~~--------~~~~~~~~~-----~~~~~~~~~~~-----~~~~~l~~~l~~~gi~v~~g~~~~~--------------- 331 (361)
T 3ftb_A 285 KI--------GFIKRVFSP-----HANFVLCRLEN-----ISGEKLYDSLLKEDIVIRRCCNFIG--------------- 331 (361)
T ss_dssp HS--------SSEEEEECC-----SSSEEEEEESS-----SCHHHHHHHHHTTTEECEECTTSTT---------------
T ss_pred hC--------CCCceecCC-----CCeEEEEEcCC-----CCHHHHHHHHHHCCeEEeeCccCCC---------------
Confidence 87 6687 7655 36778888765 4566666666666999998865431
Q ss_pred hhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 562 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+.+.||+|++ +.+|+++|++.|+++++
T Consensus 332 -------------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 332 -------------------LDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp -------------------CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 13469999987 99999999999998764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=200.66 Aligned_cols=295 Identities=12% Similarity=0.114 Sum_probs=196.2
Q ss_pred HHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 174 AMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+.|+.+++++ |++.+...|+||+|+|+|+.+++.++ +++||+|++. ..|++ + ...++..|++++.++.+
T Consensus 71 ~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~--~---~~~~~~~g~~~~~v~~~ 144 (388)
T 1j32_A 71 RLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM-IEPGDEVIIPAPFWVS--Y---PEMVKLAEGTPVILPTT 144 (388)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTH--H---HHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCChh--H---HHHHHHcCCEEEEecCC
Confidence 4455555554 65332337999999999999999998 7899997654 46664 2 33456789999999986
Q ss_pred CC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCC----C---C
Q 006746 249 WP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPK----D---M 316 (632)
Q Consensus 249 ~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~----~---m 316 (632)
.. ++.+++++|+++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++.... . +
T Consensus 145 ~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 218 (388)
T 1j32_A 145 VETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI 218 (388)
T ss_dssp GGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred cccCCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCH
Confidence 32 4568999999988653 589999999999999987 77 8899999999999999876521 0 1
Q ss_pred CCCCCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchh
Q 006746 317 DSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 394 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 394 (632)
..++....+.|+++.|+||++| +.| +|+++++++.++.+.+...
T Consensus 219 ~~~~~~~~~~~~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~-------------------------------- 264 (388)
T 1j32_A 219 GAASPEAYERSVVCSGFAKTYA--MTGWRVGFLAGPVPLVKAATKIQG-------------------------------- 264 (388)
T ss_dssp GGSCHHHHHTEEEEEESTTTTT--CTTTCCEEEECCHHHHHHHHHHHH--------------------------------
T ss_pred HHccccccCCEEEEeechhccC--CcccceEEEEeCHHHHHHHHHHHh--------------------------------
Confidence 1121111457999999999998 558 8999988776544432100
Q ss_pred hhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHH
Q 006746 395 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 474 (632)
Q Consensus 395 ~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~ 474 (632)
.++. +.+.+.... ..++|+.. ...++.+.++.+.+.
T Consensus 265 -----~~~~----------------~~~~~~~~a----------------------~~~~l~~~-~~~~~~~~~~~~~~~ 300 (388)
T 1j32_A 265 -----HSTS----------------NVCTFAQYG----------------------AIAAYENS-QDCVQEMLAAFAERR 300 (388)
T ss_dssp -----TTTC----------------SCCHHHHHH----------------------HHHHHHSC-SHHHHHHHHHHHHHH
T ss_pred -----hccc----------------CCCHHHHHH----------------------HHHHHhCC-cHHHHHHHHHHHHHH
Confidence 0000 000011000 00233211 112677788899999
Q ss_pred HHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcE-EEEEEccCCCCccCHHHHH-HHHHhCCcEEccCccCChHHHhHH
Q 006746 475 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA-LAFNVFDWKREKIEPVLVQ-KLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 475 ~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~i-vaFnv~~~~G~~i~~~~V~-kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
++|.+.|.++ |.++++.|. ++. +.+.+.+. | ++...+. +|++++||.++.|..|.
T Consensus 301 ~~l~~~L~~~--------~g~~~~~~~-----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~------- 357 (388)
T 1j32_A 301 RYMLDALNAM--------PGLECPKPD-----GAFYMFPSIAKT-G--RSSLDFCSELLDQHQVATVPGAAFG------- 357 (388)
T ss_dssp HHHHHHHHTC--------TTCBCCCCC-----BTTEECCBCGGG-T--CCHHHHHHHHHHHHCEECEEGGGGT-------
T ss_pred HHHHHHHhhC--------CCCcccCCC-----eeEEEEEecCCC-C--CCHHHHHHHHHHhCCEEEeChhhhC-------
Confidence 9999999886 445555542 333 22233321 1 3455555 45556899998763211
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|++ ++.+||+++++.|+++++.
T Consensus 358 -----------------------------~~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 358 -----------------------------ADDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp -----------------------------CTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 1358999987 7999999999999988754
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-20 Score=206.52 Aligned_cols=314 Identities=13% Similarity=-0.001 Sum_probs=207.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhh---CCCCCCC-----eEEEec-cccchhhHHHHHHHHhcC
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAES---YPFMSVK-----NLLTVY-DYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~s---l~~~~gd-----~ilt~~-d~~s~~v~~~~~~a~~~G 239 (632)
.++++++++.+++++|++. .+++|+++|+|+.+++.. +..++|| +|++.. .|++ +. ..++..|
T Consensus 106 ~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~--~~---~~~~~~G 177 (474)
T 1wyu_B 106 LRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGS--NP---ATASMAG 177 (474)
T ss_dssp HHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTH--HH---HHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChh--hH---HHHHHCC
Confidence 4788899999999999973 477899999999873333 2234665 777654 4543 22 3456789
Q ss_pred CEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccc-cchH-HHHHHhhCCcEEEEeccccCCCCCC
Q 006746 240 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYL-WMRIAQENDWHILIDACALGPKDMD 317 (632)
Q Consensus 240 ~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~-~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~ 317 (632)
++++.++.+ +++.+|+++|+++|+++ +++|++++. |.||.. .|++ |+++|+++|+++++|+++..+. +.
T Consensus 178 ~~vv~v~~~-~~~~~d~~~L~~~i~~~------t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~-~g 248 (474)
T 1wyu_B 178 YQVREIPSG-PEGEVDLEALKRELGPH------VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAI-MG 248 (474)
T ss_dssp CEEEEECBC-TTSSBCHHHHHHHCSTT------EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGT-TT
T ss_pred CEEEEecCC-CCCCcCHHHHHHhhCCC------ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhh-cc
Confidence 999999987 57889999999998754 488889885 679998 6999 9999999999999999997654 12
Q ss_pred CCCCCCCCCcEEEEccccccCCCCC-----ceEEEEEeCCCccccCCCCCC--CceeecccccccccccccCCCCCCccc
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPS-----GFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~-----G~G~L~Vr~~~~~~L~~~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
.++...+++|++++|+||+||. |. |+|+++++++.++.+.....+ |. ..... |. .... +
T Consensus 249 ~~~~~~~g~di~~~s~~K~~~~-p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~-~~~~~----~~-~~~~---~---- 314 (474)
T 1wyu_B 249 WARPGDMGFDVVHLNLHKTFTV-PHGGGGPGSGPVGVKAHLAPYLPVPLVERGEE-GFYLD----FD-RPKS---I---- 314 (474)
T ss_dssp TCCHHHHTCSEEECCTTTTTCC-CCTTSCCCCCCEEECGGGGGGCCSCEEEECSS-CEEEE----CC-CTTC---C----
T ss_pred CCCcccCCCcEEEEeCcccccc-CCCCCCCCeEEEEEcHHHHHhCCCCeeeccCC-eeEec----cc-Cccc---C----
Confidence 3444556899999999998876 74 699999999887767533221 10 00000 00 0000 0
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh---CHHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL---GLTMIS 467 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~---Gl~~I~ 467 (632)
.++ +.++.+. .++. +++..+..+ |+..+.
T Consensus 315 --~~~-------------------~~~~~~~---~~~~------------------------aa~~~l~~~g~~~l~~~~ 346 (474)
T 1wyu_B 315 --GRV-------------------RSFYGNF---LALV------------------------RAWAYIRTLGLEGLKKAA 346 (474)
T ss_dssp --CCS-------------------SSTTSCH---HHHH------------------------HHHHHHHHHHHHHHHHHH
T ss_pred --ccc-------------------ccCcCcH---HHHH------------------------HHHHHHHHHHHHHHHHHH
Confidence 000 0111111 1111 455555433 466668
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChH
Q 006746 468 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 468 ~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~ 547 (632)
++.+.++++|.+.|.++ |... ++++. ..+..++.| . .| ++...+.+.+.++||.+.+..+
T Consensus 347 ~~~~~~~~~l~~~L~~~------g~~~--~~~~~--~~~~~~~~~--~--~~--~~~~~l~~~L~~~Gi~~~~~~~---- 406 (474)
T 1wyu_B 347 ALAVLNARYLKELLKEK------GYRV--PYDGP--SMHEFVAQP--P--EG--FRALDLAKGLLELGFHPPTVYF---- 406 (474)
T ss_dssp HHHHHHHHHHHHHHHHT------TCBC--SSCSS--CCSCEEEBC--S--TT--CCHHHHHHHHHHTTCCCCEESC----
T ss_pred HHHHHHHHHHHHHHhhc------CcEe--cCCCC--cceEEEEEc--C--CC--CCHHHHHHHHHHCCcccccccc----
Confidence 88999999999999886 3222 12211 112233332 1 12 4566666655566887521100
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+.||+|++.++|.+||+++++.|+++++.
T Consensus 407 -------------------------------~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 407 -------------------------------PLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp -------------------------------STTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred -------------------------------ccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 0012368999999999999999999999998865
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-20 Score=199.50 Aligned_cols=168 Identities=11% Similarity=0.078 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
....++.|+++++++|++ .+++++|+|+|+.+++.++ +++||+|++. ..|++ ....+...++..|++++.++.
T Consensus 58 ~~~~~~l~~~la~~~g~~----~~i~~~sG~~ai~~~~~~~-~~~gd~vl~~~~~y~~-~~~~~~~~~~~~g~~~~~v~~ 131 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA----GSAAFGSGMGAISSSTLAF-LQKGDHLIAGDTLYGC-TVSLFTHWLPRFGIEVDLIDT 131 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHTTT-CCTTCEEEEESSCCHH-HHHHHHHHHHHTTCEEEEECT
T ss_pred ChHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchH-HHHHHHHHHHHcCCEEEEECC
Confidence 456789999999999986 3566778899999999998 7899997754 56665 344445556789999999876
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
.+.++++++|+++ +++|.++..+|+||...|++ |.++|+++|+++++|.++..+....+++ +++
T Consensus 132 ------~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~~ 196 (389)
T 3acz_A 132 ------SDVEKVKAAWKPN------TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LGA 196 (389)
T ss_dssp ------TCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TTC
T ss_pred ------CCHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cCC
Confidence 3788888888653 58999999999999999999 9999999999999999988765213554 579
Q ss_pred cEEEEccccccCCCCCc--eEEEEEeC-CCccccC
Q 006746 327 DFLICSFYQIFGENPSG--FGCLFVKK-STVPILV 358 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G--~G~L~Vr~-~~~~~L~ 358 (632)
|+++.|++|++|. |.+ .|++++++ +.++.+.
T Consensus 197 di~~~S~sK~~~~-~~~~~~G~v~~~~~~~~~~l~ 230 (389)
T 3acz_A 197 DIALHSVSKYING-HGDVIGGVSSAKTAEDIATIK 230 (389)
T ss_dssp SEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHHH
T ss_pred eEEEECChhhccC-CCCceeEEEEECcHHHHHHHH
Confidence 9999999998775 666 59999988 6655443
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-21 Score=202.79 Aligned_cols=324 Identities=12% Similarity=0.129 Sum_probs=216.7
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|+|.++. |+.|+.+++++.+.+... .+.... | .....++++++++
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la 97 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL--------------------MAMPQT--L---PTPMRGEFYRTLT 97 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------CCCCTT--S---CCHHHHHHHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhC--------------------CCCccc--c---CCHHHHHHHHHHH
Confidence 45789999654 668888888876543211 000000 1 2356789999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEEE-eccccchhhHHHHHHHHhcCCE------------EEEEe
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PFMSVKNLLT-VYDYESEAVEAMIRTSEKRGAR------------VMSAE 246 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~------------v~~v~ 246 (632)
++++++++ .|+||+|+|+|+.+++.++ .+.+|++|++ ...||+....++ +..|.+ +..++
T Consensus 98 ~~~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~----~~~g~~~~~~~~~p~~~~~~~~~ 171 (395)
T 1vef_A 98 AILPPELN--RVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSL----SVTWEPKYREPFLPLVEPVEFIP 171 (395)
T ss_dssp HTSCTTEE--EEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHH----HTCCCHHHHGGGCSCSSCEEEEC
T ss_pred HhcCCCcC--EEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhh----hhcCCcccccccCCCCCCeeEeC
Confidence 99988654 7999999999999998875 2356888664 456775333332 223443 33332
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc-CCCC--CCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL-GPKD--MDS 318 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~g~~--m~~ 318 (632)
. .|+++|+++|+++ +++|++.+.+|.||...| ++ |.++|+++|+++++|.++. .+.. ..+
T Consensus 172 ~------~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~ 239 (395)
T 1vef_A 172 Y------NDVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 239 (395)
T ss_dssp T------TCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred C------CcHHHHHHHhccC------EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhH
Confidence 2 4789999888643 589999988889999998 99 9999999999999999987 3221 011
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhh
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 398 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 398 (632)
++.....+|++ |++|++|. +.++|+++++++.++.+.+...++ .|
T Consensus 240 ~~~~~~~~d~~--s~sK~~~~-g~~~G~~~~~~~~~~~l~~~~~~~----------~~---------------------- 284 (395)
T 1vef_A 240 FEHFGIVPDIL--TLAKALGG-GVPLGVAVMREEVARSMPKGGHGT----------TF---------------------- 284 (395)
T ss_dssp HHHHTCCCSEE--EECGGGGT-TSSCEEEEEEHHHHHTSCTTSSCC----------SS----------------------
T ss_pred hhhcCCCCCEE--EEcccccC-CCceEEEEehHHHHhhhccCCcCC----------Cc----------------------
Confidence 22233467977 77998875 678999999988666554311100 00
Q ss_pred hccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHH
Q 006746 399 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 478 (632)
Q Consensus 399 e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~ 478 (632)
. .+.+...++. ++|+.+.+ +.+.++.+.+.+++.
T Consensus 285 -------~------------~~~~~~~a~~------------------------~al~~~~~---~~~~~~~~~~~~~l~ 318 (395)
T 1vef_A 285 -------G------------GNPLAMAAGV------------------------AAIRYLER---TRLWERAAELGPWFM 318 (395)
T ss_dssp -------T------------TCHHHHHHHH------------------------HHHHHHHH---HTTHHHHHHHHHHHH
T ss_pred -------C------------CCHHHHHHHH------------------------HHHHHHHh---CCHHHHHHHHHHHHH
Confidence 0 0111112222 56776654 456788999999999
Q ss_pred HHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhh
Q 006746 479 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 558 (632)
Q Consensus 479 ~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~ 558 (632)
+.|.++ +.+.+... ...+.++.|.+.+. ....+++|++++||.++.+
T Consensus 319 ~~l~~~------~~~~~~~~-----~~~g~~~~~~~~~~-----~~~l~~~l~~~~gi~v~~~----------------- 365 (395)
T 1vef_A 319 EKLRAI------PSPKIREV-----RGMGLMVGLELKEK-----AAPYIARLEKEHRVLALQA----------------- 365 (395)
T ss_dssp HHHHTS------CCTTEEEE-----EEETTEEEEEESSC-----SHHHHHHHHHHHCEECEES-----------------
T ss_pred HHHHHh------hcCceEEE-----EEEEEEEEEEEcCh-----HHHHHHHHHHHCCeEEecC-----------------
Confidence 999987 32333221 12467888877641 3344455553679988642
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+.+.||+|++++++.+|++++++.|++++
T Consensus 366 -----------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 366 -----------------------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp -----------------------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 23589999999999999999999999876
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=205.04 Aligned_cols=349 Identities=11% Similarity=0.017 Sum_probs=225.0
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchh-HHHHHHHHHHHHHcCCCCCC
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQES-GLESAMKKRIMDFLNISEND 189 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~-~~~~~~R~~ia~~l~a~~~e 189 (632)
...+++.+++++.+++++.+.+.... ..+++.+....|.... ...+.+|+.+++++|+++
T Consensus 26 i~~~~~~~~~~~~v~~a~~~~~~~~~-----------------~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~-- 86 (407)
T 2dkj_A 26 LELIASENFVSKQVREAVGSVLTNKY-----------------AEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW-- 86 (407)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCC-----------------CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--
T ss_pred eeeccCCCCCCHHHHHHHHhhhhcCc-----------------ccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc--
Confidence 33456667779999999876543100 0022222221122222 333358889999999974
Q ss_pred ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCC--EEEEEeccCCccccCHHHHHHHHHhc
Q 006746 190 YGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGA--RVMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 190 y~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~--~v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
..+++.|+|+|+.+++.++ +++|++|++. ..|++ .... ...++..|+ .+..++++..++.+|+++|++++++.
T Consensus 87 -~~i~~~sGt~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 162 (407)
T 2dkj_A 87 -ANVQPHSGSQANMAVYMAL-MEPGDTLMGMDLAAGG-HLTH-GSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH 162 (407)
T ss_dssp -EECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTC-CGGG-TCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH
T ss_pred -ceEEecchHHHHHHHHHHh-cCCCCEEEEecccccC-ccch-HHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhc
Confidence 3455556778999999998 7899997654 46654 2110 011223344 34444434235678999999999752
Q ss_pred CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 267 GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~---~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
++++++++...| |...|++ |.++|+++|+++++|.++..|. +.....++ .+|++++|+||+++. |.
T Consensus 163 -----~~~~v~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g-~~ 232 (407)
T 2dkj_A 163 -----RPKVIVAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP--YAHVVTSTTHKTLRG-PR 232 (407)
T ss_dssp -----CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT--TCSEEEEESSGGGCC-CS
T ss_pred -----CCeEEEEecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc--cccEEEEeccccCCC-CC
Confidence 247888854444 5889999 9999999999999999987632 10111111 379999999996653 77
Q ss_pred ceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCccc
Q 006746 343 GFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 421 (632)
Q Consensus 343 G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~ 421 (632)
| |+++++ ++.++.+.+.... | ..++++.
T Consensus 233 ~-G~~~~~~~~~~~~l~~~~~~------------~--------------------------------------~~~~~~~ 261 (407)
T 2dkj_A 233 G-GLILSNDPELGKRIDKLIFP------------G--------------------------------------IQGGPLE 261 (407)
T ss_dssp C-EEEEESCHHHHHHHHHHHTT------------T--------------------------------------TCSSCCH
T ss_pred c-eEEEECCHHHHHHHHhhhcc------------c--------------------------------------ccCCCcH
Confidence 6 999998 5665444321100 0 0111222
Q ss_pred chhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCC
Q 006746 422 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 501 (632)
Q Consensus 422 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~ 501 (632)
..+.++. ++|+.+...+++.+.++.+.+.+++.+.|.++ | ++++++.
T Consensus 262 ~~~~a~~------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~ 308 (407)
T 2dkj_A 262 HVIAGKA------------------------VAFFEALQPEFKEYSRLVVENAKRLAEELARR------G---YRIVTGG 308 (407)
T ss_dssp HHHHHHH------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS
T ss_pred HHHHHHH------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC------C---ceeecCC
Confidence 2223333 67777655578999999999999999999987 3 4566542
Q ss_pred CCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCC
Q 006746 502 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 581 (632)
Q Consensus 502 ~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 581 (632)
..+.++.+.+.+. | ++...+.+.+.++||.++.|..... .. ...
T Consensus 309 ---~~~~~~~~~~~~~-~--~~~~~~~~~l~~~gi~v~~~~~~~~----~~--------------------------~~~ 352 (407)
T 2dkj_A 309 ---TDNHLFLVDLRPK-G--LTGKEAEERLDAVGITVNKNAIPFD----PK--------------------------PPR 352 (407)
T ss_dssp ---CSSSEEEEECGGG-T--CCHHHHHHHHHHTTEECEECCCTTC----SS--------------------------CTT
T ss_pred ---CCceEEEEECccc-C--CCHHHHHHHHHHcCceecCCcCccc----cc--------------------------ccc
Confidence 3578888887641 1 4667777777889999987742100 00 011
Q ss_pred CCcEEEEccCCC----CCHHHHHHHHHHHHHhhhh
Q 006746 582 GITVVTASLGYL----ANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 582 ~~~~VRvSlg~~----~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.+|+|++.+ .|.+|++++++.|+++++.
T Consensus 353 ~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 353 VTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp TCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 235899999876 7999999999999999876
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=213.44 Aligned_cols=285 Identities=13% Similarity=0.043 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..++++|+.+++ +|++ ..++||+|+|+|+.+++.++ +++||+|++.. .|++ ... .+...|++++.++..
T Consensus 57 ~~~~~~~~~la~-~g~~---~~v~~~~G~t~a~~~~~~a~-~~~gd~Vlv~~~~h~s-~~~----~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY---DGYFLVNGTTSGILSVIQSF-SQKKGDILMARNVHKS-VLH----ALDISQQEGHFIETH 126 (446)
T ss_dssp SHHHHHHHHHCS-CTTE---EEEEESSHHHHHHHHHHHTT-TTSSSCEEECTTCCHH-HHH----HHHHHTCCEEECEEE
T ss_pred hHHHHHHHHHHh-cCCC---ceEEEeCCHHHHHHHHHHHh-cCCCCEEEEecCccHH-HHH----HHHHcCCeEEEEeCe
Confidence 466899999999 9986 27999999999999999998 78999987654 5664 232 234479999998873
Q ss_pred C-Cc----cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC-C-CCC
Q 006746 249 W-PR----LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM-D-SFG 320 (632)
Q Consensus 249 ~-~~----~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m-~-~ld 320 (632)
+ ++ +.++.++| +.+ +++++++++ .|.+|..+|++ |+++|+++|+++++|.++...... . +++
T Consensus 127 ~~~~~~~~~~~d~~~l---~~~------~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~ 196 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRL---NND------GHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDS 196 (446)
T ss_dssp ECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCC
T ss_pred eccccCcCCCCCHHHH---cCC------CceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCC
Confidence 2 22 45777776 333 358899999 67799999999 999999999999999998761100 0 445
Q ss_pred CCCCCCcEEEEcccc-ccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 321 LSLVRPDFLICSFYQ-IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 321 ls~~~~Df~~~S~hK-~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
...+++|+++.|+|| ++| |.|+|+|+++++.++ +.+...+ . .. +
T Consensus 197 ~~~~g~Di~~~S~~K~l~~--~~g~g~l~~~~~~i~-~~~~~~~------------~-----------------~~--~- 241 (446)
T 2x3l_A 197 TLNYQADYVVQSFHKTLPA--LTMGSVLYIHKNAPY-RENIIEY------------L-----------------SY--F- 241 (446)
T ss_dssp GGGGTCSEEEECHHHHSSS--CTTCEEEEEETTCTT-HHHHHHH------------H-----------------HH--H-
T ss_pred hHHcCCCEEEECCcccccc--ccccEEEEEcCCcCC-HHHHHHH------------H-----------------HH--H-
Confidence 555678999999999 555 889999999987653 2110000 0 00 0
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
+.++++...+.++. .+++++...|.+.+.+|.+.+.+++++
T Consensus 242 ---------------~~~s~~~~~~aal~------------------------~a~~~l~~~g~~~~~~~~~~l~~~l~~ 282 (446)
T 2x3l_A 242 ---------------QTSSPSYLIMASLE------------------------SAAQFYKTYDSTLFFAKRAQLIECLEN 282 (446)
T ss_dssp ---------------SCSSCCHHHHHHHH------------------------HHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ---------------cCCCchHHHHHHHH------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 12334444455565 678888888888889999999999888
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEc-cCccCChHHHhHHHHhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS-YGSLHHIWFSDKYQKEKDN 558 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr-~G~~c~~~~~~~~~~~~~~ 558 (632)
. . ++++++.+ +..+.|.+.+ ++...+.+.+.++||.++ .|
T Consensus 283 ~--g-----------~~~~~~~~----~~~l~i~~~~-----~~~~~l~~~L~~~GI~v~~~g----------------- 323 (446)
T 2x3l_A 283 K--G-----------FEMLQVDD----PLKLLIKYEG-----FTGHDIQNWFMNAHIYLELAD----------------- 323 (446)
T ss_dssp H--T-----------CEEEECSS----TTEEEEECTT-----SCHHHHHHHHHHTTEEESEEC-----------------
T ss_pred c--C-----------CEECcCCC----CeEEEEEeCC-----cCHHHHHHHHHHCCCEEEecC-----------------
Confidence 7 2 34555532 2346777653 566777766666699986 22
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.||++++.++|.+|+ ++++.|+++++.
T Consensus 324 ------------------------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 324 ------------------------DYQALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp ------------------------SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred ------------------------CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 25899999999999999 999999998754
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=202.04 Aligned_cols=323 Identities=13% Similarity=0.085 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
....+.|+++++++|++ .++|++|+|+|+.+++.++.+++||+|++. ..|++ + ...++..|++++.++++
T Consensus 63 ~~~~~l~~~la~~~~~~----~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~--~---~~~~~~~g~~~~~~~~~ 133 (399)
T 2oga_A 63 PELEGFEAEFAAYCETD----HAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIA--S---WLAVSATGATPVPVEPH 133 (399)
T ss_dssp HHHHHHHHHHHHHTTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH--H---HHHHHHTTCEEEEECBC
T ss_pred hhHHHHHHHHHHHHCCC----eEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHH--H---HHHHHHCCCEEEEEecC
Confidence 45678999999999985 478899999999999999877899997654 56664 2 23456789999999987
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC--
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR-- 325 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~-- 325 (632)
+.++.+++++|+++|+++ +++|+ .+|+||...|++ |.++|+++|+++++|+++..+.. .+...++
T Consensus 134 ~~~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~---~~~~~~~~~ 201 (399)
T 2oga_A 134 EDHPTLDPLLVEKAITPR------TRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGAR---YRGRRIGAG 201 (399)
T ss_dssp SSSSSBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCE---ETTEETTCT
T ss_pred CCCCCcCHHHHHHhcCCC------CeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCc---cCCeecccc
Confidence 445679999999988753 46666 357899999999 99999999999999999987741 1222233
Q ss_pred CcEEEEccc--cccCCCCCc-eEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 326 PDFLICSFY--QIFGENPSG-FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 326 ~Df~~~S~h--K~~G~~P~G-~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
+|++++|+| |++| |.| .|+++.+ ++.++.+.+....|... . |... ..|
T Consensus 202 ~di~~~S~~~sK~~~--~~G~~g~~~~~~~~~~~~l~~~~~~g~~~------~-~~~~-------------------~~g 253 (399)
T 2oga_A 202 SSVAAFSFYPGKNLG--CFGDGGAVVTGDPELAERLRMLRNYGSRQ------K-YSHE-------------------TKG 253 (399)
T ss_dssp TCEEEEECCTTSSSC--CSSCCEEEEESCHHHHHHHHHHHBTTCSS------T-TCCC-------------------SCC
T ss_pred cCEEEEeCCCCccCC--cCCceEEEEeCCHHHHHHHHHHHhcCccc------c-cccc-------------------ccc
Confidence 699999996 9999 534 5566655 45554444321111100 0 0000 001
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
.. +. .+......+ .++|+. ++.+.++.+.+.+++.+.|
T Consensus 254 ~~-~~------------~~~~~~a~~------------------------~~~l~~-----~~~~~~~~~~~~~~l~~~L 291 (399)
T 2oga_A 254 TN-SR------------LDEMQAAVL------------------------RIRLAH-----LDSWNGRRSALAAEYLSGL 291 (399)
T ss_dssp CB-CC------------CCHHHHHHH------------------------HHHHHT-----HHHHHHHHHHHHHHHHHHT
T ss_pred cC-CC------------cCHHHHHHH------------------------HHHHHH-----HHHHHHHHHHHHHHHHHHh
Confidence 00 00 000001111 133333 4556788889999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCCcE-EEEEEccCCCCccCHHHHHHHHHhCCcEEccCcc-CChHHHhHHHHhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRGPA-LAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHIWFSDKYQKEKDNV 559 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg~i-vaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~-c~~~~~~~~~~~~~~~ 559 (632)
.++ |.+++..+. ....++ +.|.+.. .+...+.+.+.++||.++.++. +... .. .
T Consensus 292 ~~~--------~g~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gI~v~~~~~~~~~~--~~-------~ 347 (399)
T 2oga_A 292 AGL--------PGIGLPVTA--PDTDPVWHLFTVRT-----ERRDELRSHLDARGIDTLTHYPVPVHL--SP-------A 347 (399)
T ss_dssp TTC--------TTCBCCCCC--TTEECCCSSEEEEC-----SSHHHHHHHHHHTTBCCBCSCSSCGGG--SH-------H
T ss_pred ccC--------CCccccCCC--CCCcceeEEEEEEC-----CCHHHHHHHHHHCCCceecCCCCcccc--ch-------h
Confidence 876 445554322 122233 3455543 2566677767778999987642 1110 00 0
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.... ........ ......++||+|++.++|.+||+++++.|+++++.
T Consensus 348 ~~~~~--~~~~~~p~---~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 348 YAGEA--PPEGSLPR---AESFARQVLSLPIGPHLERPQALRVIDAVREWAER 395 (399)
T ss_dssp HHTTS--CCTTSCHH---HHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred hcccC--CCCCCChh---HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 00000000 00001258999999999999999999999998753
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=198.98 Aligned_cols=282 Identities=13% Similarity=0.133 Sum_probs=197.7
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+++++++|++++ .|+||+|+|+|+++++.++ +++||+|++. ..|++ ....++..|++++.++.+ +.
T Consensus 68 ~~lr~~la~~~g~~~~--~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~-----~~~~~~~~g~~~~~v~~~-~~ 138 (360)
T 3hdo_A 68 QKLREVAGELYGFDPS--WIIMANGSDEVLNNLIRAF-AAEGEEIGYVHPSYSY-----YGTLAEVQGARVRTFGLT-GD 138 (360)
T ss_dssp HHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCTH-----HHHHHHHHTCEEEEECBC-TT
T ss_pred HHHHHHHHHHhCcCcc--eEEEcCCHHHHHHHHHHHH-hCCCCEEEEcCCChHH-----HHHHHHHCCCEEEEeeCC-CC
Confidence 4789999999998765 7999999999999999998 7899997754 45553 234567789999999986 33
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC--CCCCCCCCC-CCCCCc
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG--PKDMDSFGL-SLVRPD 327 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~--g~~m~~ldl-s~~~~D 327 (632)
+.+ +++++. .+++++++++.+|+||..+|++ +.++|+++|+++++|.++.. +. ..+.+ ...+.+
T Consensus 139 ~~~--~~l~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~ 206 (360)
T 3hdo_A 139 FRI--AGFPER--------YEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAES--NALELVRRHENV 206 (360)
T ss_dssp SSB--TTCCSS--------BCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSC--CCTHHHHHCSSE
T ss_pred CCH--HHHHhh--------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCc--chhHHhccCCCE
Confidence 334 333211 1246999999999999999999 99999999999999998773 22 12211 234567
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCc
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 407 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~ 407 (632)
+++.|++|.+|.+..++|+++++++.++.+..... .|
T Consensus 207 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~------------~~------------------------------- 243 (360)
T 3hdo_A 207 VVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD------------HY------------------------------- 243 (360)
T ss_dssp EEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC------------SC-------------------------------
T ss_pred EEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC------------CC-------------------------------
Confidence 99999999988422346888876655443322100 00
Q ss_pred cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCC
Q 006746 408 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP 487 (632)
Q Consensus 408 ~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~ 487 (632)
+.+.+...++. ++|+.. ..++.+.++.+.+.+++.+.|.++
T Consensus 244 ----------~~~~~~~~a~~------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~--- 284 (360)
T 3hdo_A 244 ----------NLDRLAQAACV------------------------AALRDQ--AYLSECCRRIRETREWFTTELRSI--- 284 (360)
T ss_dssp ----------CSCHHHHHHHH------------------------HHHHCH--HHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ----------CCCHHHHHHHH------------------------HHhcCH--HHHHHHHHHHHHHHHHHHHHHHHC---
Confidence 01111112221 444431 136788889999999999999887
Q ss_pred CCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccc
Q 006746 488 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA 567 (632)
Q Consensus 488 ~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~ 567 (632)
| ++++.+ .+..+.+.+.+ ++...+.+.+.++||.++.|..
T Consensus 285 ---~---~~~~~~-----~~~~~~~~~~~-----~~~~~l~~~l~~~gi~v~~~~~------------------------ 324 (360)
T 3hdo_A 285 ---G---YDVIPS-----QGNYLFATPPD-----RDGKRVYDGLYARKVLVRHFSD------------------------ 324 (360)
T ss_dssp ---T---CEECCC-----SSSEEEEECTT-----CCHHHHHHHHHHTTEECBCCCS------------------------
T ss_pred ---C---CEEcCC-----CccEEEEECCC-----CCHHHHHHHHHHCCEEEEECCC------------------------
Confidence 3 344432 46677776654 4677777777788999986521
Q ss_pred cccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 568 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+.||+|++ +.+|+++|++.|+++.+.
T Consensus 325 ------------~~~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 325 ------------PLLAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp ------------TTTTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred ------------CCCCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 012368999987 999999999999988664
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=203.21 Aligned_cols=289 Identities=17% Similarity=0.172 Sum_probs=198.3
Q ss_pred HHHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 173 SAMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.|+.+++++ |++.+...|++|+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.++.
T Consensus 81 ~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~ 154 (389)
T 1o4s_A 81 YELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-LDPGDEVIVFSPVWVS-Y----IPQIILAGGTVNVVET 154 (389)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEEec
Confidence 36677777776 76322237999999999999999998 788999765 456664 2 2345678999999998
Q ss_pred cCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCCCC-CCCC
Q 006746 248 SWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKDMD-SFGL 321 (632)
Q Consensus 248 ~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~m~-~ldl 321 (632)
+.. +..+++++|+++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++..+..-. ..++
T Consensus 155 ~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~ 228 (389)
T 1o4s_A 155 FMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSI 228 (389)
T ss_dssp CGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCH
T ss_pred CCccCCCCCHHHHHHhcccC------ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCH
Confidence 632 3468999999888643 588999999999999998 88 8999999999999999987643100 1111
Q ss_pred ---C-CCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 322 ---S-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 322 ---s-~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
. ..+.|+++.|++|++| +.| +|+++++++.++.+.+...
T Consensus 229 ~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~l~~~~~~~~~l~~~~~--------------------------------- 273 (389)
T 1o4s_A 229 LDVSEGFDRIVYINGFSKSHS--MTGWRVGYLISSEKVATAVSKIQS--------------------------------- 273 (389)
T ss_dssp HHHCSSSTTEEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHHH---------------------------------
T ss_pred hhcCCCCCcEEEEeechhhcC--CcccceEEEEeCHHHHHHHHHHhh---------------------------------
Confidence 1 1467999999999998 557 8999998766544332100
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~ 475 (632)
.++.. .+.+... .++..+. .|++.+.++.+.+.+
T Consensus 274 ----~~~~~----------------~~~~~~~-------------------------a~~~~l~-~~~~~~~~~~~~~~~ 307 (389)
T 1o4s_A 274 ----HTTSC----------------INTVAQY-------------------------AALKALE-VDNSYMVQTFKERKN 307 (389)
T ss_dssp ----HHTCS----------------CCHHHHH-------------------------HHHHHTT-CCCHHHHHHHHHHHH
T ss_pred ----hcccC----------------CCHHHHH-------------------------HHHHHHh-ccHHHHHHHHHHHHH
Confidence 00000 0000000 2222232 247888999999999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
++.+.|.++ |. +++.|. .+..+.+.+. .+...+ ++|++++||.++.|..|.
T Consensus 308 ~l~~~L~~~------g~---~~~~~~----~~~~~~~~~~------~~~~~l~~~l~~~~gi~v~~g~~f~--------- 359 (389)
T 1o4s_A 308 FVVERLKKM------GV---KFVEPE----GAFYLFFKVR------GDDVKFCERLLEEKKVALVPGSAFL--------- 359 (389)
T ss_dssp HHHHHHHHT------TC---CCCCCS----BSSEEEEECS------SCHHHHHHHHHHHHCEECEEGGGGT---------
T ss_pred HHHHHHHhc------CC---eeecCC----cceEEEEeCC------CCHHHHHHHHHHHCCEEEeCchhcC---------
Confidence 999999987 32 333331 2334444543 244445 455568899998663211
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|++ ++.+||+++++.|+++++
T Consensus 360 ---------------------------~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 360 ---------------------------KPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp ---------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 1258999998 499999999999998875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=195.72 Aligned_cols=294 Identities=15% Similarity=0.133 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
..++.++.+++++|++. .+++.++|+|+..++.++ .++||.|++.. .|++ .. ...+..|++++.++.
T Consensus 105 ~~~~l~~~la~~~g~~~----~i~~~sGt~a~~~~l~~~-~~~gd~Vl~~~~~~~~-~~----~~~~~~g~~~~~~~~-- 172 (409)
T 3kki_A 105 DKPMIEKRLAKFTGFDE----CLLSQSGWNANVGLLQTI-CQPNTNVYIDFFAHMS-LW----EGARYANAQAHPFMH-- 172 (409)
T ss_dssp TSCHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHH-CCTTCEEEEETTSCHH-HH----HHHHHTTCEEEEECT--
T ss_pred HHHHHHHHHHHHhCCCe----EEEecchHHHHHHHHHHh-cCCCCEEEECCCcCHH-HH----HHHHHcCCeEEEecC--
Confidence 34578999999999862 345566789999888888 68999987654 4443 22 234557888876653
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCC--------CCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMD--------SFG 320 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~--------~ld 320 (632)
.|+++|+++|.+++ +++|++++..|+||...|++ |.++|+++|+++++|.++..+.- . .++
T Consensus 173 ----~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~-g~~g~~~~~~~~ 242 (409)
T 3kki_A 173 ----NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTH-GPNGAGLLAELG 242 (409)
T ss_dssp ----TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS-SGGGCCHHHHHT
T ss_pred ----CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccccc-CCCCCcchhhcC
Confidence 57899999998642 48999999999999999999 99999999999999999876431 1 122
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
+. .++|+++.|++|.+| +. .|+++.+++.++.+..... .| .+ .
T Consensus 243 ~~-~~~di~~~s~sK~~~--~~-gg~v~~~~~~~~~~~~~~~------------~~-----------------~~----~ 285 (409)
T 3kki_A 243 LT-REVHFMTASLAKTFA--YR-AGAIWCNNEVNRCVPFISY------------PA-----------------IF----S 285 (409)
T ss_dssp CG-GGCSEEEEESSSTTC--SS-CEEEEESSSGGGTHHHHCH------------HH-----------------HH----S
T ss_pred CC-CCCCEEEeecchhhC--CC-ceEEEECHHHHHHHHHhCc------------Cc-----------------cc----c
Confidence 21 368999999999999 43 4888888876654432100 00 00 0
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
+ +.+...+.++. ++|+.++.. +.+.++.+.+.++|++.
T Consensus 286 ~----------------~~~~~~~aa~~------------------------aal~~~~~~--~~~~~~~~~~~~~l~~~ 323 (409)
T 3kki_A 286 S----------------TLLPYEAAGLE------------------------TTLEIIESA--DNRRQHLDRMARKLRIG 323 (409)
T ss_dssp B----------------CCCHHHHHHHH------------------------HHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred C----------------CCcHHHHHHHH------------------------HHHHHHhcC--HHHHHHHHHHHHHHHHH
Confidence 0 01111222332 677777654 67888999999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
|.++ |.+ +. ..+.++.+.+.+. .+...+.+.+.++||.++.+++..
T Consensus 324 L~~~------g~~---~~------~~~~~~~~~~~~~----~~~~~~~~~L~~~Gv~v~~~~~~~--------------- 369 (409)
T 3kki_A 324 LSQL------GLT---IR------SESQIIGLETGDE----RNTEKVRDYLESNGVFGSVFCRPA--------------- 369 (409)
T ss_dssp HHTT------TCC---CC------CSSSEEEEEEESH----HHHHHHHHHHHHTTEECEEECTTS---------------
T ss_pred HHHc------CCc---cC------CCCCEEEEEeCCH----HHHHHHHHHHHHCCceEeeeCCCC---------------
Confidence 9987 432 22 2577888877642 123344444445599987543211
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhccccccccee
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRY 622 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~f~~~~~~~~ 622 (632)
...+.+.||+|++.++|.+||+++++.|++.++. ..|++
T Consensus 370 ------------------~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~-----~~~~~ 408 (409)
T 3kki_A 370 ------------------TSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY-----GDFYF 408 (409)
T ss_dssp ------------------SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH-----SSCCC
T ss_pred ------------------cCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc-----CCCCc
Confidence 0124579999999999999999999999998764 36764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=199.26 Aligned_cols=285 Identities=10% Similarity=0.066 Sum_probs=195.6
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|++++++++++++ .|+||+|+|+|+.+++.++ +||+|++ ...|++ ....++..|++++.++.+..+
T Consensus 62 ~~l~~~la~~~~~~~~--~v~~~~g~~~al~~~~~~~---~gd~vl~~~p~y~~-----~~~~~~~~g~~~~~v~~~~~~ 131 (364)
T 1lc5_A 62 FHLHQALARHHQVPAS--WILAGNGETESIFTVASGL---KPRRAMIVTPGFAE-----YGRALAQSGCEIRRWSLREAD 131 (364)
T ss_dssp HHHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHH---CCSEEEEEESCCTH-----HHHHHHHTTCEEEEEECCGGG
T ss_pred HHHHHHHHHHHCcCHH--HEEECCCHHHHHHHHHHHc---CCCeEEEeCCCcHH-----HHHHHHHcCCeEEEEeCCccc
Confidence 5899999999999765 7999999999999999998 5788765 445654 234457789999999986322
Q ss_pred cccC-HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCC--CCCCCCC-CC
Q 006746 252 LRIN-SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPK--DMDSFGL-SL 323 (632)
Q Consensus 252 ~~i~-~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~--~m~~ldl-s~ 323 (632)
+ ++ ++++.+.+.+ +++++++++.+|+||..+| ++ |+++|+++|+++++|.++.... ....+++ ..
T Consensus 132 ~-~~~l~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 204 (364)
T 1lc5_A 132 G-WQLTDAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKD 204 (364)
T ss_dssp T-TCCCTTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTT
T ss_pred c-cchhHHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhcc
Confidence 2 33 3444444432 3588999999999999999 77 8999999999999999986422 0012332 34
Q ss_pred CCCcEEEEccccccCCCCCc--eEEEE-EeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 324 VRPDFLICSFYQIFGENPSG--FGCLF-VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G--~G~L~-Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
.+.|+++.|++|++|. .| +|+++ .+++.++.+.+... .|
T Consensus 205 ~~~~i~~~s~sK~~~~--~G~r~G~~~~~~~~~~~~l~~~~~------------~~------------------------ 246 (364)
T 1lc5_A 205 NPHIWVLRSLTKFYAI--PGLRLGYLVNSDDAAMARMRRQQM------------PW------------------------ 246 (364)
T ss_dssp CTTEEEEEESTTTTTC--TTTCCEEEECCCHHHHHHHHHHSC------------TT------------------------
T ss_pred CCCEEEEEECchhhcC--CccceEEEEECCHHHHHHHHHhCC------------CC------------------------
Confidence 6779999999999984 36 69999 77766554432100 01
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
+.+.+...++. ++|+.. ..++.+.++.+.+.+++.+.
T Consensus 247 -----------------~~~~~~~~~~~------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~ 283 (364)
T 1lc5_A 247 -----------------SVNALAALAGE------------------------VALQDS--AWQQATWHWLREEGARFYQA 283 (364)
T ss_dssp -----------------CSCHHHHHHHH------------------------HGGGCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHH------------------------HHHhCc--HHHHHHHHHHHHHHHHHHHH
Confidence 00111111111 333321 24677888888999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
|.++ |.++++.+ .+..+.+.+.+. ....+++|. ++||.++.|..|..
T Consensus 284 L~~~--------~~~~~~~~-----~g~~~~~~~~~~-----~~~l~~~l~-~~gi~v~~g~~~~~-------------- 330 (364)
T 1lc5_A 284 LCQL--------PLLTVYPG-----RANYLLLRCERE-----DIDLQRRLL-TQRILIRSCANYPG-------------- 330 (364)
T ss_dssp HHTS--------TTEEECCC-----SSSEEEEEESCT-----TCCHHHHHH-TTTEECEECTTSTT--------------
T ss_pred HhcC--------CCCEECCC-----CCeEEEEECCCc-----HHHHHHHHH-HCCcEEeeCcccCC--------------
Confidence 9876 56777632 467777777541 123444444 56999987754421
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+.+.||+|++ +.+|+++|++.|+++++
T Consensus 331 --------------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 358 (364)
T 1lc5_A 331 --------------------LDSRYYRVAIR---SAAQNERLLAALRNVLT 358 (364)
T ss_dssp --------------------CCTTEEEEECC---CHHHHHHHHHHHHHHC-
T ss_pred --------------------CCCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 12469999964 79999999999999865
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=202.54 Aligned_cols=296 Identities=12% Similarity=0.083 Sum_probs=200.6
Q ss_pred HHHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.+++++ +++++ .|++|+|+|+|+.+++.++ +++||+|++ ...|++ ....++..|++++.+
T Consensus 81 ~~l~~~la~~l~~~~g~~~~~~--~v~~t~g~~~al~~~~~~l-~~~gd~Vl~~~~~~~~-----~~~~~~~~g~~~~~v 152 (406)
T 1xi9_A 81 PELRKAIVEREKRKNGVDITPD--DVRVTAAVTEALQLIFGAL-LDPGDEILVPGPSYPP-----YTGLVKFYGGKPVEY 152 (406)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCHH--HEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCcc-----HHHHHHHcCCEEEEe
Confidence 35677777776 34443 7999999999999999998 788999765 456653 234456789999999
Q ss_pred eccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCC-CCCC
Q 006746 246 EFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKD-MDSF 319 (632)
Q Consensus 246 ~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~-m~~l 319 (632)
+.+. .+..+|+++|+++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++..... -...
T Consensus 153 ~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 226 (406)
T 1xi9_A 153 RTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI 226 (406)
T ss_dssp EEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC
T ss_pred ecCCCcCCcCCHHHHHHhhCcC------ceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCC
Confidence 9873 23457999999988653 588999999999999988 77 89999999999999999876320 0011
Q ss_pred CCCC--CCC-cEEEEccccccCCCCCc--eEEEE--EeC----CCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 320 GLSL--VRP-DFLICSFYQIFGENPSG--FGCLF--VKK----STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 320 dls~--~~~-Df~~~S~hK~~G~~P~G--~G~L~--Vr~----~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
.+.. .+. |+++.|++|++| +.| +|+++ .++ +.++.+....
T Consensus 227 ~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~l~~~l~~~~--------------------------- 277 (406)
T 1xi9_A 227 SPGSLTKDVPVIVMNGLSKVYF--ATGWRLGYMYFVDPENKLSEVREAIDRLA--------------------------- 277 (406)
T ss_dssp CHHHHCSSSCEEEEEESTTTTC--CGGGCCEEEEEECTTCTTHHHHHHHHHHH---------------------------
T ss_pred CHHHcCCCceEEEEeccccccC--CCccEEEEEEEecCchhHHHHHHHHHHHH---------------------------
Confidence 2221 355 899999999999 557 89999 565 3333221100
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
.. + + +.+.+...++. ++|+... .+++.+.+
T Consensus 278 ----------~~-~--~------------~~~~~~~~a~~------------------------~~l~~~~-~~~~~~~~ 307 (406)
T 1xi9_A 278 ----------RI-R--L------------CPNTPAQFAAI------------------------AGLTGPM-DYLKEYMK 307 (406)
T ss_dssp ----------HH-T--C------------CSCSHHHHHHH------------------------HHHHSCC-HHHHHHHH
T ss_pred ----------Hh-h--c------------CCCHHHHHHHH------------------------HHHhCCc-HHHHHHHH
Confidence 00 0 0 01111112221 4443211 13677888
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEE-EEccCCCCccCHHHHH-HHHHhCCcEEccCccCCh
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF-NVFDWKREKIEPVLVQ-KLADRENISLSYGSLHHI 546 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaF-nv~~~~G~~i~~~~V~-kla~~~gI~lr~G~~c~~ 546 (632)
+.+.+.+++.+.|.++ |.++++.|. ++.+.+ .+.+..| .+...+. ++++++||.++.|..|..
T Consensus 308 ~~~~~~~~l~~~L~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~ 372 (406)
T 1xi9_A 308 KLKERRDYIYKRLNEI--------PGISTTKPQ-----GAFYIFPKIEVGPW--KNDKEFVLDVLHNAHVLFVHGSGFGE 372 (406)
T ss_dssp HHHHHHHHHHHHHHTS--------TTEECCCCC-----BSSEECCEECSCSC--SSHHHHHHHHHHHHCEECEEGGGGCG
T ss_pred HHHHHHHHHHHHHHhC--------CCCeeecCC-----eeEEEEEecCccCC--CCHHHHHHHHHHhCCEEEeCchhcCC
Confidence 8999999999999886 567766542 444433 4442101 3455554 555688999987743321
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||+|++ ++.+||+++++.|+++++.
T Consensus 373 ----------------------------------~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 373 ----------------------------------YGAGHFRAVFL--PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp ----------------------------------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 02368999998 9999999999999998764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=206.68 Aligned_cols=364 Identities=11% Similarity=0.083 Sum_probs=219.3
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch-hHHHHHHHHHHHHHcCCCCCCc-cE
Q 006746 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESAMKKRIMDFLNISENDY-GM 192 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~-~~~~~~~R~~ia~~l~a~~~ey-~v 192 (632)
++-.+.|+.|++++...+... |..+||.+.+..|... ..+.+.+|++++++||++.+++ ..
T Consensus 61 as~n~~~~~V~eA~~~~l~~~-----------------y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~ 123 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNK-----------------YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVN 123 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTC-----------------CCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred CCCCCCCHHHHHHHHHHHcCC-----------------CccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceE
Confidence 677788999999987655321 1225666664323332 3555689999999999987555 45
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhH-HHHH--HHHhcCCE--EEEEeccCCccccCHHHHHHHHHhc
Q 006746 193 VFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVE-AMIR--TSEKRGAR--VMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 193 vft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~-~~~~--~a~~~G~~--v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
|++.|+|.|+..+..++ .++||+|++ ...|.+.... .+.. .....|.. +..+++++.++.+|.++|++++.+.
T Consensus 124 v~~~sGt~An~~al~al-~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~ 202 (490)
T 2a7v_A 124 VQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF 202 (490)
T ss_dssp CCCSSHHHHHHHHHHHH-CCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHH
T ss_pred EeCCchHHHHHHHHHHH-cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhc
Confidence 77779999999999998 799999764 3444321111 1100 11223443 3344455557889999999999753
Q ss_pred CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 267 GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~---~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
+ ++++++.... +|...|++ |.++|+++|+++++|++|++|. ...+..+. ++|++++|+||.++. |.
T Consensus 203 ~-----~klIi~~~s~--~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~G-p~ 272 (490)
T 2a7v_A 203 R-----PRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRG-AR 272 (490)
T ss_dssp C-----CSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCS-CS
T ss_pred C-----CcEEEEcCCC--CCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCcc-cc
Confidence 2 4777765443 46778999 9999999999999999986531 00122222 689999999996643 88
Q ss_pred ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccc
Q 006746 343 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 422 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~ 422 (632)
| |+++.+++... ..+. . |. .. ++ ++. ..+. .. -|.+ ..|+++..
T Consensus 273 G-G~i~~~~~~~~-~~~~-~-~~-~~------~~--------~l~-----~~i~---~~--~~~g-------~qggp~~~ 316 (490)
T 2a7v_A 273 S-GLIFYRKGVKA-VDPK-T-GR-EI------PY--------TFE-----DRIN---FA--VFPS-------LQGGPHNH 316 (490)
T ss_dssp C-EEEEEECSEEE-EETT-T-EE-EE------EC--------CCH-----HHHH---HH--HTTT-------TCCSCCHH
T ss_pred c-hheeeccchhc-cccc-c-cc-hh------hH--------HHH-----HHHH---HH--hccc-------CCCCchHH
Confidence 7 99999886431 1110 0 00 00 00 000 0000 00 0000 13456666
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC
Q 006746 423 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 502 (632)
Q Consensus 423 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~ 502 (632)
.+.++. .|+..+..-+++...+++...+++|.+.|.++ | +++..+.
T Consensus 317 ~iaAla------------------------~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~------G---~~v~~~~- 362 (490)
T 2a7v_A 317 AIAAVA------------------------VALKQACTPMFREYSLQVLKNARAMADALLER------G---YSLVSGG- 362 (490)
T ss_dssp HHHHHH------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS-
T ss_pred HHHHHH------------------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc------C---cEEecCC-
Confidence 677775 67776654345778889999999999999987 5 3444321
Q ss_pred CCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCC
Q 006746 503 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 582 (632)
Q Consensus 503 ~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 582 (632)
....++.+.+.+. | ++...+.+++++.||.+..+.. ++ + .....
T Consensus 363 --t~t~lv~vdl~~~-g--~~~~~~~~~L~~~GI~v~~~~~--p~--------------------d---------~~p~~ 406 (490)
T 2a7v_A 363 --TDNHLVLVDLRPK-G--LDGARAERVLELVSITANKNTC--PG--------------------D---------RSAIT 406 (490)
T ss_dssp --CSSSEEEEECTTT-T--CCHHHHHHHHHHTTEECEEECC--TT--------------------C---------CCSSS
T ss_pred --CCCeEEEEEeCCC-C--CCHHHHHHHHHhCCeEEecCcc--CC--------------------C---------CCCCC
Confidence 1246676766542 2 6778888888889999864421 10 0 01223
Q ss_pred CcEEEEccCC----CCCHHHHHHHHHHHHHhhhh
Q 006746 583 ITVVTASLGY----LANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 583 ~~~VRvSlg~----~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.||+++.. ..+.+|+++++++|.+.|+.
T Consensus 407 ~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 407 PGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp CSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 5689997644 45899999999999998763
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-20 Score=199.27 Aligned_cols=302 Identities=13% Similarity=0.107 Sum_probs=205.6
Q ss_pred HHHHHHHHHHcC------------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcC
Q 006746 173 SAMKKRIMDFLN------------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRG 239 (632)
Q Consensus 173 ~~~R~~ia~~l~------------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G 239 (632)
.+.|+.|+++++ ++++ .|++|+|+|+|+.+++.++ .++||+|++ ...|++ + ...++..|
T Consensus 78 ~~lr~~la~~~~~~~~~~~~~~~~~~~~--~v~~~~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~--~---~~~~~~~g 149 (416)
T 1bw0_A 78 PEAREAVATWWRNSFVHKEELKSTIVKD--NVVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPH--Y---ETVCKAYG 149 (416)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTGGGCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--H---HHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcccccCCCCCCcc--eEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCcHh--H---HHHHHHcC
Confidence 478888998888 5554 7999999999999999998 688999765 456664 2 33567789
Q ss_pred CEEEEEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC--
Q 006746 240 ARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG-- 312 (632)
Q Consensus 240 ~~v~~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~-- 312 (632)
++++.++.+.. ...+|+++|+++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++..
T Consensus 150 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 223 (416)
T 1bw0_A 150 IGMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMV 223 (416)
T ss_dssp CEEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred cEEEEeecCcccCCCCCHHHHHHHhccC------CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 99999998632 2458999999988653 488999999999999999 88 89999999999999998775
Q ss_pred --CC----CCCCC-CCCCCCCcEEEEccccccCCCCCc--eEEEEEeCC--CccccCCCCCCCceeeccccccccccccc
Q 006746 313 --PK----DMDSF-GLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKS--TVPILVDNTSSGMVSLLPAKKQLWLTDEF 381 (632)
Q Consensus 313 --g~----~m~~l-dls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~--~~~~L~~~~~gG~v~~~~~~~~~~~~~~~ 381 (632)
+. ...++ .+...+.++++.|++|.||. .| +|+++++++ .++.+....
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~Glr~G~~~~~~~~~~~~~~~~~~-------------------- 281 (416)
T 1bw0_A 224 FKGKDPNATFTSVADFETTVPRVILGGTAKNLVV--PGWRLGWLLYVDPHGNGPSFLEGL-------------------- 281 (416)
T ss_dssp CCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSC--GGGCCEEEEEECTTCSCHHHHHHH--------------------
T ss_pred cCCCCCCCCccCHHHccCCCcEEEEecchhhCCC--CCceEEEEEeeCchhhHHHHHHHH--------------------
Confidence 22 11111 22222345888999999884 36 799998874 433221100
Q ss_pred CCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh
Q 006746 382 SSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL 461 (632)
Q Consensus 382 ~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~ 461 (632)
..+. .. .++.+.+...++. ++|+.....
T Consensus 282 -----------~~~~---~~--------------~~~~~~~~~~a~~------------------------~~l~~~~~~ 309 (416)
T 1bw0_A 282 -----------KRVG---ML--------------VCGPCTVVQAALG------------------------EALLNTPQE 309 (416)
T ss_dssp -----------HHHH---HH--------------HTCSCHHHHHHHH------------------------HHHHSSCHH
T ss_pred -----------HHHh---cc--------------ccCCCcHHHHHHH------------------------HHHhcccHH
Confidence 0000 00 0111222222222 444432233
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC-CCccCHHHH-HHHHHhCCcEEc
Q 006746 462 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK-REKIEPVLV-QKLADRENISLS 539 (632)
Q Consensus 462 Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~-G~~i~~~~V-~kla~~~gI~lr 539 (632)
+++.+.++.+.+.+++.+.|.++ |.++++.|. .+..+.+.+...+ +...+...+ +++++++||.++
T Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~--------~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 377 (416)
T 1bw0_A 310 HLDQIVAKIEESAMYLYNHIGEC--------IGLAPTMPR----GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVL 377 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS--------TTEEECCCC----BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--------CCCcccCCC----eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEe
Confidence 57788889999999999999876 567776552 3555666664210 001244444 556678899998
Q ss_pred cCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 540 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 540 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.|..|. ..+.||+|++ ++.+|+++.++.|+++++.
T Consensus 378 ~g~~f~------------------------------------~~~~iRis~~--~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 378 PGTIFH------------------------------------APGFTRLTTT--RPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp EGGGGT------------------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred cccccC------------------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 763221 1358999996 6899999999999988754
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-20 Score=197.23 Aligned_cols=169 Identities=12% Similarity=0.051 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
...+++.|++|++++|++ ++++++++++|+.+++.++ +++||+|++. ..|++ ....+...++..|++++.++.
T Consensus 61 ~~~~~~l~~~ia~~~g~~----~~i~~~~g~~ai~~~~~~l-~~~gd~Vl~~~~~y~~-~~~~~~~~~~~~g~~~~~v~~ 134 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTI-LKAGDHLISDECLYGC-THALFEHALTKFGIQVDFINT 134 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHH-HHHHHHTHHHHTTCEEEEECT
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEeCChHHHHHHHHHHH-hCCCCEEEEeCCCchh-HHHHHHHHHHHcCCEEEEECC
Confidence 456779999999999985 4666777789999999988 6899997755 46664 333333356778999999886
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh-CCcEEEEeccccCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE-NDWHILIDACALGPKDMDSFGLSLVR 325 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~-~g~~vlvDaaq~~g~~m~~ldls~~~ 325 (632)
+ |.++|+++|+++ ++++++++.+|+||..+|++ |+++|++ +|+++++|.++..+..-.++ .++
T Consensus 135 ~------d~~~l~~~i~~~------t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~---~~~ 199 (404)
T 1e5e_A 135 A------IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV---DFG 199 (404)
T ss_dssp T------STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG---GGT
T ss_pred C------CHHHHHHhcCCC------CcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc---ccC
Confidence 4 567888888653 58999999999999999999 9999999 99999999999876521233 257
Q ss_pred CcEEEEccccccCCCCCc--eEEEEEeCCCcc-ccCC
Q 006746 326 PDFLICSFYQIFGENPSG--FGCLFVKKSTVP-ILVD 359 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~-~L~~ 359 (632)
.|+++.|++|+||. |.+ .|+++++++.+. .+.+
T Consensus 200 ~di~~~S~sK~~~~-~g~ri~G~~~~~~~~~~~~l~~ 235 (404)
T 1e5e_A 200 VDVVVHSATKYING-HTDVVAGLICGKADLLQQIRMV 235 (404)
T ss_dssp CSEEEEETTTTTTC-SSCCCCEEEEECHHHHHHHHHT
T ss_pred CEEEEEcCccccCC-CCCCeEEEEEECHHHHHHHHHH
Confidence 89999999998885 655 699999987765 4543
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=191.81 Aligned_cols=283 Identities=9% Similarity=0.052 Sum_probs=202.3
Q ss_pred HHHHHHHHHH------cCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDF------LNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~------l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.++++ ++++++ .|+||+|+|+|+.+++.++ .++||+|++ ...|++ + ...++..|++++.+
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~--~v~~~~G~~~al~~~~~~l-~~~gd~Vl~~~~~y~~--~---~~~~~~~g~~~~~v 143 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRD--NLWAANGSNEILQQLLQAF-GGPGRTALGFQPSYSM--H---PILAKGTHTEFIAV 143 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHH-CSTTCEEEEEESSCTH--H---HHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhhhhcccCCCChH--hEEECCChHHHHHHHHHHh-cCCCCEEEEcCCChHH--H---HHHHHHcCCEEEEe
Confidence 3678888887 566654 7999999999999999998 688999765 456664 2 23456789999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC-CCCCCC-C
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-MDSFGL-S 322 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-m~~ldl-s 322 (632)
+.+ +++.+++++|++++++. +++++++++.+|+||..+|++ +.++++..++++++|.++..+.. ...+++ .
T Consensus 144 ~~~-~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~ 217 (369)
T 3cq5_A 144 SRG-ADFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLE 217 (369)
T ss_dssp ECC-TTSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTT
T ss_pred cCC-cCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHh
Confidence 986 45578999999999761 247888999999999999999 99999999999999999876431 011332 2
Q ss_pred CCC-CcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 323 LVR-PDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 323 ~~~-~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
.++ .++++.|++|++| +.| +|+++++++.++.+..... .|.
T Consensus 218 ~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~------------~~~---------------------- 261 (369)
T 3cq5_A 218 KYPTKLVVSRTMSKAFD--FAGGRLGYFVANPAFIDAVMLVRL------------PYH---------------------- 261 (369)
T ss_dssp TCTTTEEEEEESSSTTS--CGGGCCEEEEECTHHHHHHHTTSC------------TTC----------------------
T ss_pred hCCCCEEEEEechHhcC--CcccceEEEEeCHHHHHHHHHcCC------------CCC----------------------
Confidence 345 6799999999998 346 6999998876554432110 010
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.+.+...++. ++|+.. ..++.+.++.+.+.++|.+
T Consensus 262 -------------------~~~~~~~a~~------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~ 296 (369)
T 3cq5_A 262 -------------------LSALSQAAAI------------------------VALRHS--ADTLGTVEKLSVERVRVAA 296 (369)
T ss_dssp -------------------SCHHHHHHHH------------------------HHHHTH--HHHHTHHHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHHH------------------------HHhcCH--HHHHHHHHHHHHHHHHHHH
Confidence 0001111111 344432 1367778889999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
.|.++ | ++++.+ .+.++.+.+. .+...+.+.+.++||.++.|.
T Consensus 297 ~L~~~------g---~~~~~~-----~~~~~~~~~~------~~~~~l~~~l~~~gi~v~~~~----------------- 339 (369)
T 3cq5_A 297 RLEEL------G---YAVVPS-----ESNFVFFGDF------SDQHAAWQAFLDRGVLIRDVG----------------- 339 (369)
T ss_dssp HHHHH------T---CEEECC-----SSSEEEEECC------SSHHHHHHHHHHTTEECBCCS-----------------
T ss_pred HHHhC------C---CEECCC-----CCeEEEEECC------CCHHHHHHHHHHCCEEEEECC-----------------
Confidence 99876 4 455522 4677777654 245566666678899987540
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|++ +.+|++++++.|+++++.
T Consensus 340 ----------------------~~~~iRis~~---~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 340 ----------------------IAGHLRTTIG---VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp ----------------------CTTEEEEECC---CHHHHHHHHHHHHHHHTT
T ss_pred ----------------------CCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 1258999998 899999999999998754
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=196.20 Aligned_cols=283 Identities=10% Similarity=0.065 Sum_probs=196.0
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC-CeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSV-KNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~g-d~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
.+.|++|+++++++++ .|++|+|+|+++.+++.++ .++| |+|++. ..|++ + ...++..|++++.++.+ +
T Consensus 61 ~~lr~~la~~~~~~~~--~v~~~~G~~~ai~~~~~~~-~~~g~d~Vl~~~p~~~~--~---~~~~~~~g~~~~~v~~~-~ 131 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGM--Y---SVSAETIGVECRTVPTL-D 131 (356)
T ss_dssp HHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCTH--H---HHHHHHHTCEEEECCCC-T
T ss_pred HHHHHHHHHHhCCChH--HEEEcCCHHHHHHHHHHHH-hCCCCCEEEEeCCChHH--H---HHHHHHcCCEEEEeeCC-C
Confidence 5899999999999865 7999999999999999998 6789 897765 45553 1 33456689999999886 4
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HH---HHHhhCCcEEEEeccccCCCC-CCCCCC-CCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WM---RIAQENDWHILIDACALGPKD-MDSFGL-SLV 324 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~---~~a~~~g~~vlvDaaq~~g~~-m~~ldl-s~~ 324 (632)
++.+|+++++++++ + ++++++++.+|+||..+|.+ +. +.|+ +|+++++|.++..... ...+++ ..+
T Consensus 132 ~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~ 203 (356)
T 1fg7_A 132 NWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEY 203 (356)
T ss_dssp TSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTC
T ss_pred CCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhC
Confidence 55689999887765 3 58999999999999999976 54 4555 8999999999774221 011222 345
Q ss_pred CCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccc
Q 006746 325 RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 402 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt 402 (632)
+.++++.|++|+|| +.| +|+++++++.++.+.... ..|.
T Consensus 204 ~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~------------~~~~------------------------- 244 (356)
T 1fg7_A 204 PHLAILRTLSKAFA--LAGLRCGFTLANEEVINLLMKVI------------APYP------------------------- 244 (356)
T ss_dssp TTEEEEEESSSTTC--CGGGCCEEEEECHHHHHHHHHHS------------CSSC-------------------------
T ss_pred CCEEEEecchHhhc--CchhhhEEEEeCHHHHHHHHHhc------------CCCC-------------------------
Confidence 67899999999999 457 699999877655443210 0010
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
.+.+...+.. ++|+......++.+.++.+.+.++|.+.|.
T Consensus 245 ----------------~~~~~~~a~~------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 284 (356)
T 1fg7_A 245 ----------------LSTPVADIAA------------------------QALSPQGIVAMRERVAQIIAEREYLIAALK 284 (356)
T ss_dssp ----------------SCHHHHHHHH------------------------HHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCHHHHHHHH------------------------HHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111 333221100167778888999999999999
Q ss_pred ccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEcc-CccCChHHHhHHHHhhhhhhh
Q 006746 483 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSY-GSLHHIWFSDKYQKEKDNVLE 561 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~-G~~c~~~~~~~~~~~~~~~l~ 561 (632)
++ +.+..+.|. .+..+.+.+. +...+.+.+.++||.++. |..|.
T Consensus 285 ~~--------~~~~~~~~~----~~~~~~~~~~-------~~~~l~~~L~~~gI~v~~~g~~~~---------------- 329 (356)
T 1fg7_A 285 EI--------PCVEQVFDS----ETNYILARFK-------ASSAVFKSLWDQGIILRDQNKQPS---------------- 329 (356)
T ss_dssp HS--------TTEEEECCC----SSSEEEEEET-------THHHHHHHHHHTTEECEECTTSTT----------------
T ss_pred hC--------CCceEECCC----CCeEEEEECC-------CHHHHHHHHHHCCEEEEECCCCCC----------------
Confidence 87 334334442 4667766664 244555555788999986 64321
Q ss_pred hhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 562 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
..+.||+|++ +.+|++++++.|+++
T Consensus 330 --------------------~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 330 --------------------LSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp --------------------CTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred --------------------CCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 1248999987 699999999999865
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=200.54 Aligned_cols=305 Identities=12% Similarity=0.088 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCC-ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 169 SGLESAMKKRIMDFLNISEND-YGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~e-y~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.++.+++++.+++++|.+.+. ..|+||+|+|+|+.+++.++ +++||+|++. ..|++ ....++..|++++.++
T Consensus 81 ~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~-----~~~~~~~~g~~~~~~~ 154 (407)
T 3nra_A 81 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFA-----NRKLVEFFEGEMVPVQ 154 (407)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT-CCTTCEEEEEESCCTH-----HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-CCCCCEEEEcCCcccc-----hHHHHHHcCCEEEEee
Confidence 467788889999999985321 37999999999999999998 7899997754 45553 2345677899999999
Q ss_pred ccC-----CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----C
Q 006746 247 FSW-----PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----P 313 (632)
Q Consensus 247 ~~~-----~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g 313 (632)
.+. .++.+++++|++++.++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++.. +
T Consensus 155 ~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g 228 (407)
T 3nra_A 155 LDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAG 228 (407)
T ss_dssp BCCCSSCCSSCCBCHHHHHHHHHTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTT
T ss_pred cccccccCcCCCcCHHHHHHHHhhC------CcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence 831 45678999999999864 488999999999999999 88 88999999999999999876 2
Q ss_pred CCCCC---CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccc
Q 006746 314 KDMDS---FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 314 ~~m~~---ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
....+ ++....+.++++.|++|.+|.+..++|+++.++++++.+..... .|
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~------------~~-------------- 282 (407)
T 3nra_A 229 ASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQA------------IV-------------- 282 (407)
T ss_dssp CCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHH------------HH--------------
T ss_pred CCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHh------------hh--------------
Confidence 21111 11023456799999999998422346888877665544432100 00
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 470 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~ 470 (632)
..+ .+.+...++. .+|+.. ...++...++.
T Consensus 283 ---------~~~----------------~~~~~~~a~~------------------------~~l~~~-~~~~~~~~~~~ 312 (407)
T 3nra_A 283 ---------SLR----------------AAGYSQAVLR------------------------GWFDEA-PGWMEDRIARH 312 (407)
T ss_dssp ---------TSS----------------SCHHHHGGGG------------------------GTTCCC-TTHHHHHHHHH
T ss_pred ---------ccC----------------CChHHHHHHH------------------------HHHhcc-chHHHHHHHHH
Confidence 000 0000011111 222110 01256677888
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHH-HHHHhCCcEEccCccCChHHH
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQ-KLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~-kla~~~gI~lr~G~~c~~~~~ 549 (632)
+.+.++|.+.|.++ |.++++.|. .+..+.+.+.+. .++...+. +|++++||.++.|..|.+
T Consensus 313 ~~~~~~l~~~L~~~--------~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~~~~--- 374 (407)
T 3nra_A 313 QAIRDELLHVLRGC--------EGVFARTPQ----AGSYLFPRLPKL---AVAPAEFVKILRLQAGVVVTPGTEFSP--- 374 (407)
T ss_dssp HHHHHHHHHHHHTS--------TTCBCCCCS----BSSEECCBCCCB---SSCHHHHHHHHHHHHCEECEEGGGTCT---
T ss_pred HHHHHHHHHHHhcC--------CCceeccCC----eeEEEEEeCCCC---CCCHHHHHHHHHHhCCEEEeCchhhCC---
Confidence 88999999999876 446555542 233443333321 14555555 455678999998865542
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||+|++. +.+||+++++.|+++++.
T Consensus 375 -------------------------------~~~~~iRis~~~--~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 375 -------------------------------HTADSVRLNFSQ--DHEAAVAAARRIVTLVER 404 (407)
T ss_dssp -------------------------------TCTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 134699999984 999999999999988753
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=202.46 Aligned_cols=301 Identities=14% Similarity=0.105 Sum_probs=204.5
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPR 251 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~ 251 (632)
.+.|+.+++++|++++ .|++|+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.++.+ ++
T Consensus 77 ~~l~~~la~~~g~~~~--~v~~~~g~~~al~~~~~~~-~~~gd~Vl~~~p~y~~-----~~~~~~~~g~~~~~~~~~-~~ 147 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPE--EVLITTGSQQALDLVGKVF-LDEGSPVLLEAPSYMG-----AIQAFRLQGPRFLTVPAG-EE 147 (397)
T ss_dssp HHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHTTCCEEEEEEEE-TT
T ss_pred HHHHHHHHHHhCCChh--hEEEeccHHHHHHHHHHHh-CCCCCEEEEeCCCcHH-----HHHHHHHcCCEEEecCcC-CC
Confidence 5789999999998765 7999999999999999998 6789997654 45553 234466789999999987 34
Q ss_pred cccCHHHHHHHHHhcCcCCCceeEE-EEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCC--CCCCCCCCC
Q 006746 252 LRINSEKLRKMVVSKGKKKKQRGLF-VFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKD--MDSFGLSLV 324 (632)
Q Consensus 252 ~~i~~~~l~~~i~~~~~~~~~~~Lv-~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~--m~~ldls~~ 324 (632)
+ +++++|++++++. +++++ ++++.+|+||..+|.+ |+++|+++|+++++|.++....- ....++..+
T Consensus 148 ~-~d~~~l~~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 221 (397)
T 2zyj_A 148 G-PDLDALEEVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFEL 221 (397)
T ss_dssp E-ECHHHHHHHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHH
T ss_pred C-CCHHHHHHHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhh
Confidence 4 8999999999862 23666 6799999999999864 77889999999999999876320 012333333
Q ss_pred CC------cEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhh
Q 006746 325 RP------DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 398 (632)
Q Consensus 325 ~~------Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 398 (632)
++ ++++.|++|++| +..++|+++++++.++.+..... .|
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~------------~~---------------------- 266 (397)
T 2zyj_A 222 AREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQ------------GA---------------------- 266 (397)
T ss_dssp HHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHH------------HH----------------------
T ss_pred CcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHH------------hh----------------------
Confidence 33 389999999999 32357999988766544432100 00
Q ss_pred hccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHH
Q 006746 399 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 478 (632)
Q Consensus 399 e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~ 478 (632)
..++ +.+...++. ++|+......++.+.++.+...++|.
T Consensus 267 ~~~~-----------------~~~~~~a~~------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~ 305 (397)
T 2zyj_A 267 DLHT-----------------PMLNQMLVH------------------------ELLKEGFSERLERVRRVYREKAQAML 305 (397)
T ss_dssp HSSC-----------------CHHHHHHHH------------------------HHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-----------------CHHHHHHHH------------------------HHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 0011 001111111 23321100125677778888888999
Q ss_pred HHHHccCCCCCCCCC-cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 479 NALMKLQHPNTEGNA-LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 479 ~~L~~l~h~~~~G~p-~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
+.|.++ .| .++++.|. .+..+.+.+.+ + ++...+.+.+.++||.++.|..|...
T Consensus 306 ~~L~~~-------~~~g~~~~~~~----~g~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~g~~f~~~---------- 360 (397)
T 2zyj_A 306 HALDRE-------VPKEVRYTRPK----GGMFVWMELPK--G--LSAEGLFRRALEENVAFVPGGPFFAN---------- 360 (397)
T ss_dssp HHHHHH-------SCTTSEECCCS----BSSEEEEECST--T--CCHHHHHHHHHHTTEEEEESGGGCTT----------
T ss_pred HHHHHH-------CCCCeEEccCC----ccEEEEEEcCC--C--CCHHHHHHHHHHCCCEEechHHhcCC----------
Confidence 998874 14 36665552 45667676653 1 45666665555669999887543320
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+.||+|++.. +.+||+++++.|+++++.
T Consensus 361 ----------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 361 ----------------------GGGENTLRLSYATL-DREGIAEGVRRLGRALKG 392 (397)
T ss_dssp ----------------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 11346999999986 999999999999988754
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=217.24 Aligned_cols=318 Identities=11% Similarity=0.001 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+.++++.+++++|++. .+++++++|+|+.+++.++ .++||+|++. ..|.| .... .++..|++++.++..
T Consensus 173 ~~i~e~e~~lA~~~gae~---~i~v~nGtt~an~~ai~al-~~pGD~VLv~~~~H~S-~~~~---~~~l~Ga~~v~v~~~ 244 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSAL-VSNGDLVLFDRNNHKS-VYNS---ALAMAGGRPVYLQTN 244 (730)
T ss_dssp THHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHH---HTTTTCCEEEEECEE
T ss_pred HHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHh-cCCCCEEEEcCCchHH-HHHH---HHHHCCCEEEEEeCC
Confidence 567899999999999963 5778888889999999998 7899998765 45654 2222 145679999988764
Q ss_pred CC----ccccCHHHH-----HHHHHhcCcC---C-CceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC-
Q 006746 249 WP----RLRINSEKL-----RKMVVSKGKK---K-KQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP- 313 (632)
Q Consensus 249 ~~----~~~i~~~~l-----~~~i~~~~~~---~-~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g- 313 (632)
.. .+.+|.++| +++|.++... . ..++++++++. |.+|...|++ |+++|+++|+++++|+|+..+
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~ 323 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 323 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence 22 134677777 8877653100 0 11278888875 6899999999 999999999999999998642
Q ss_pred -CC-----CCCCCCCCCCCc----EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 314 -KD-----MDSFGLSLVRPD----FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 314 -~~-----m~~ldls~~~~D----f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
.. ..++++..+++| +++.|+||++|. |.+.|+++++++.+.. +. ..++.
T Consensus 324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g--~~---~~i~~--------------- 382 (730)
T 1c4k_A 324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKG--QL---RYCDH--------------- 382 (730)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTT--ST---TCCCH---------------
T ss_pred ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcC--cc---cccCH---------------
Confidence 10 124555556788 999999997775 8889999999876411 00 00000
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh-hC
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LG 462 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~-~G 462 (632)
..+.+.. ...+.++++.+.+.++. .|++++.. .|
T Consensus 383 ---------~~~~~~~------------~~~~stsp~~~~iaal~------------------------aA~~~l~~~~g 417 (730)
T 1c4k_A 383 ---------KHFNNSF------------NLFMSTSPFYPMYAALD------------------------VNAAMQEGEAG 417 (730)
T ss_dssp ---------HHHHHHH------------HHHSCSSCCHHHHHHHH------------------------HHHHHHSHHHH
T ss_pred ---------HHHHHHH------------HHhCCCCCcHHHHHHHH------------------------HHHHHHHhhhh
Confidence 0000000 00124556667777776 78877765 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-cCCCCCCCCCcEEEECCCC--------------------------------CCCCCc-
Q 006746 463 LTMISRRGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKI--------------------------------RFDRGP- 508 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~-l~h~~~~G~p~v~Iygp~~--------------------------------~~~rg~- 508 (632)
. ...++...++.++++.|.+ + +.+++++|.. .....+
T Consensus 418 ~-~~~~~~~~~a~~lr~~L~~~i--------~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 488 (730)
T 1c4k_A 418 R-KLWHDLLITTIEARKKLIKAG--------SMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQ 488 (730)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHTT--------CSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTC
T ss_pred H-HHHHHHHHHHHHHHHHHhhhC--------CCeEEccccccccccccccccccccccchhhccCccchhccccccCCcc
Confidence 4 4457889999999999988 5 5678887742 000011
Q ss_pred --E----EEEEEcc---CCC----CccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccc
Q 006746 509 --A----LAFNVFD---WKR----EKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 575 (632)
Q Consensus 509 --i----vaFnv~~---~~G----~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 575 (632)
+ |+|++++ .+| ..++...+.+.+.++||.++.
T Consensus 489 ~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~----------------------------------- 533 (730)
T 1c4k_A 489 YYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK----------------------------------- 533 (730)
T ss_dssp EEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE-----------------------------------
T ss_pred cccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEE-----------------------------------
Confidence 2 6777743 111 126788888877777887641
Q ss_pred cccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 576 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 576 ~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+.+.||++++..+|.+|+++|+++|+++..
T Consensus 534 -----~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 534 -----SDLNSILFLMTPAETPAKMNNLITQLLQLQR 564 (730)
T ss_dssp -----ECSSEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----CCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1346899999999999999999999998864
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-19 Score=190.93 Aligned_cols=295 Identities=11% Similarity=0.083 Sum_probs=197.8
Q ss_pred HHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 175 MKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 175 ~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.|+.|++++ | ++++ .|+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.+|.
T Consensus 69 lr~~la~~l~~~~g~~~~~~--~v~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~-----~~~~~~~~g~~~~~v~~ 140 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQ--TVVYGPSVIYMVSELIRQW-SETGEGVVIHTPAYDA-----FYKAIEGNQRTVMPVAL 140 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGG--GEEEESCHHHHHHHHHHHS-SCTTCEEEEEESCCHH-----HHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHH-----HHHHHHHCCCEEEEeec
Confidence 566666655 6 5444 7999999999999999998 6789997654 45553 23445678999999998
Q ss_pred cCCc--cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCC--CCCC
Q 006746 248 SWPR--LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKD--MDSF 319 (632)
Q Consensus 248 ~~~~--~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~--m~~l 319 (632)
++.. ..+++++|++++++. +++++++++.+|+||..+| ++ |+++|+++|+++++|.++..... ....
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 215 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI 215 (390)
T ss_dssp EECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC
T ss_pred ccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 6432 248999999999742 3588999999999999999 67 88999999999999999876310 0122
Q ss_pred CCCCCCC---cEEEEccccccCCCCCc--eEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 320 GLSLVRP---DFLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 320 dls~~~~---Df~~~S~hK~~G~~P~G--~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
++..+.+ |. +.|++|++| +.| +|++++++ +.++.+.....|
T Consensus 216 ~~~~~~~~~~d~-~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~~~------------------------------ 262 (390)
T 1d2f_A 216 PWSNVARGDWAL-LTSGSKSFN--IPALTGAYGIIENSSSRDAYLSALKG------------------------------ 262 (390)
T ss_dssp CGGGTCCSSEEE-EECSHHHHT--CGGGCCEEEEECSHHHHHHHHHHHHT------------------------------
T ss_pred CHHHcchhhHhh-ccCccHhhc--ccChhheEEEECCHHHHHHHHHHHhh------------------------------
Confidence 3332322 77 999999998 446 69999863 444333221000
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
+ ..+ ++.+.+...++. ++|+...+ .++.+.++.+.+
T Consensus 263 -------~-~~~-----------~~~~~~~~~a~~------------------------~~l~~~~~-~~~~~~~~~~~~ 298 (390)
T 1d2f_A 263 -------R-DGL-----------SSPSVLALTAHI------------------------AAYQQGAP-WLDALRIYLKDN 298 (390)
T ss_dssp -------T-SCC-----------CSCCHHHHHHHH------------------------HHHHHCHH-HHHHHHHHHHHH
T ss_pred -------h-ccc-----------CCCCHHHHHHHH------------------------HHHhcCHH-HHHHHHHHHHHH
Confidence 0 000 111222222222 45543222 367788889999
Q ss_pred HHHHHHHHHc-cCCCCCCCCCcEEEECCCCCCCCCcEE-EEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHh
Q 006746 474 INWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPAL-AFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 474 ~~~L~~~L~~-l~h~~~~G~p~v~Iygp~~~~~rg~iv-aFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~ 550 (632)
.+++.+.|.+ + |.++++.| .++.+ .+.+.+. | ++...+.+ +++++||.++.|..|..
T Consensus 299 ~~~l~~~L~~~~--------~~~~~~~~-----~~~~~~~~~~~~~-~--~~~~~l~~~l~~~~gi~v~~g~~f~~---- 358 (390)
T 1d2f_A 299 LTYIADKMNAAF--------PELNWQIP-----QSTYLAWLDLRPL-N--IDDNALQKALIEQEKVAIMPGYTYGE---- 358 (390)
T ss_dssp HHHHHHHHHHHC--------SSCCCCCC-----SBCSEEEEECGGG-C--CCHHHHHHHHHHTTCEECEEGGGGCG----
T ss_pred HHHHHHHHHhhC--------CCCEEecC-----CccEEEEEEcccc-C--CCHHHHHHHHHHHcCEEeeCccccCC----
Confidence 9999999987 5 44555444 34444 4566532 1 34555554 44478999988754432
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
...+.||+|++. +.+|++.+++.|++.++
T Consensus 359 ------------------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (390)
T 1d2f_A 359 ------------------------------EGRGFVRLNAGC--PRSKLEKGVAGLINAIR 387 (390)
T ss_dssp ------------------------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 023689999997 58999999999988775
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=195.10 Aligned_cols=320 Identities=11% Similarity=0.134 Sum_probs=208.2
Q ss_pred CCceEeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~g------l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|+|.++.. ..++.+++++.+.+... .++... |. .....+.|+.|+
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~--------------------~~~~~~--y~---~~~~~~l~~~la 80 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL--------------------LHVSNL--YE---NPWQEELAHKLV 80 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC--------------------SCCCTT--BC---CHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhc--------------------cccCcc--cC---CHHHHHHHHHHH
Confidence 567899998643 26788888876543211 111111 21 134568899999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC--C---CCC-CeEEE-eccccchhhHHHHHHHH----hcCCE-----EEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP--F---MSV-KNLLT-VYDYESEAVEAMIRTSE----KRGAR-----VMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~--~---~~g-d~ilt-~~d~~s~~v~~~~~~a~----~~G~~-----v~~ 244 (632)
+++|++ + .|+||+|+|+|+.+++..+. . ++| |+|++ ...||.....++ .... ..|.. +..
T Consensus 81 ~~~g~~-~--~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (375)
T 2eh6_A 81 KHFWTE-G--KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSL-SATGQPKFHKGFEPLVPGFSY 156 (375)
T ss_dssp HTSSSC-E--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHH-HHCBCGGGTTTTCSCCSSEEE
T ss_pred hhcCCC-C--eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhh-hhcCCccccCCCCCCCCCcee
Confidence 999983 3 79999999999999986521 2 567 88765 456675322222 1110 01222 333
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc-CCCCCCC
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL-GPKDMDS 318 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~g~~m~~ 318 (632)
++. .|+++|+++|++ +++++++.+.+|.||...| ++ |.++|+++|+++++|.++. ++..-..
T Consensus 157 ~~~------~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 224 (375)
T 2eh6_A 157 AKL------NDIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF 224 (375)
T ss_dssp ECT------TCHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCC------chHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Confidence 332 478888887764 3589999999999999988 99 9999999999999999988 4431012
Q ss_pred CCCCCCC--CcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 319 FGLSLVR--PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 319 ldls~~~--~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
+++..++ +|++++| |.+|. |.++|+++++++.++.+.+...++. |
T Consensus 225 ~~~~~~~~~~d~~s~S--K~~~~-g~~~G~~~~~~~~~~~~~~~~~~~~----------~-------------------- 271 (375)
T 2eh6_A 225 YAYQHFNLKPDVIALA--KGLGG-GVPIGAILAREEVAQSFTPGSHGST----------F-------------------- 271 (375)
T ss_dssp SGGGGGTCCCSEEEEC--GGGGT-TSCCEEEEEEHHHHTTCCTTSCCCS----------S--------------------
T ss_pred hhhhhcCCCCCEEEEc--ccccC-CCCeEEEEEcHHHHhhhcCCCCCCC----------C--------------------
Confidence 3444455 8999777 87774 6789999999877666654211100 0
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
+++++ . .... .++|+... .+.++.+.+.++
T Consensus 272 ----~~~~~----------------~-~~~~------------------------~~~l~~~~-----~~~~~~~~~~~~ 301 (375)
T 2eh6_A 272 ----GGNPL----------------A-CRAG------------------------TVVVDEVE-----KLLPHVREVGNY 301 (375)
T ss_dssp ----TTCHH----------------H-HHHH------------------------HHHHHHHH-----HHHHHHHHHHHH
T ss_pred ----CCCHH----------------H-HHHH------------------------HHHHHHHH-----HHHHHHHHHHHH
Confidence 00000 0 0111 14454443 677889999999
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~ 556 (632)
|.+.|.++ +...+ ...+.++.+.+.+ +...+.+.+.++||.++.+
T Consensus 302 l~~~L~~~------~~~~~--------~~~g~~~~~~~~~------~~~~~~~~l~~~gi~~~~~--------------- 346 (375)
T 2eh6_A 302 FKEKLKEL------GKGKV--------KGRGLMLGLELER------ECKDYVLKALEKGLLINCT--------------- 346 (375)
T ss_dssp HHHHHHHT------TSSEE--------EEETTEEEEECSS------CCHHHHHHHHHTTEECEEE---------------
T ss_pred HHHHHHHH------hcCCc--------eEEEEEEEEEEcC------cHHHHHHHHHHCCCEEecC---------------
Confidence 99999887 22111 1246777777653 2334444444589887632
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+.+.||+|+++.++.+|++++++.|+++|
T Consensus 347 -------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 347 -------------------------AGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp -------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred -------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 13589999999999999999999998764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-20 Score=195.69 Aligned_cols=296 Identities=15% Similarity=0.093 Sum_probs=196.6
Q ss_pred HHHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|+++++ ++++ .|+||+|+|+|+++++.++ .++||+|++. ..|++ ....++..|++++.+
T Consensus 71 ~~lr~~ia~~~~~~~g~~~~~~--~v~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~~~~-----~~~~~~~~g~~~~~v 142 (391)
T 3h14_A 71 PALRQRIARLYGEWYGVDLDPG--RVVITPGSSGGFLLAFTAL-FDSGDRVGIGAPGYPS-----YRQILRALGLVPVDL 142 (391)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHH--HEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCCcc-----HHHHHHHcCCEEEEe
Confidence 356777777664 4544 7999999999999999998 6889997654 45543 234567789999999
Q ss_pred eccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCC-CCCC
Q 006746 246 EFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKD-MDSF 319 (632)
Q Consensus 246 ~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~-m~~l 319 (632)
+++.. ...+++++|+++ + ++++++++.+|+||..+| ++ |+++|+++|+++++|.++..... -...
T Consensus 143 ~~~~~~~~~~d~~~l~~~---~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 213 (391)
T 3h14_A 143 PTAPENRLQPVPADFAGL---D------LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAV 213 (391)
T ss_dssp ECCGGGTTSCCHHHHTTS---C------CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC
T ss_pred ecCcccCCCCCHHHHHhc---C------CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCc
Confidence 98732 235788888765 2 488999999999999998 77 78899999999999999874210 0012
Q ss_pred CCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhh
Q 006746 320 GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 398 (632)
Q Consensus 320 dls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 398 (632)
.+.. .+.++++.|++|.+|.+..++|+++++++.++.+..... .|
T Consensus 214 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~------------~~---------------------- 259 (391)
T 3h14_A 214 TALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQ------------NM---------------------- 259 (391)
T ss_dssp CGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHH------------HT----------------------
T ss_pred ChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHh------------hh----------------------
Confidence 2222 345688999999998423347888877765543321100 00
Q ss_pred hccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHH
Q 006746 399 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 478 (632)
Q Consensus 399 e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~ 478 (632)
. ++.+.+...++. ++|+ ....++.+.++.+.+.++|.
T Consensus 260 -~----------------~~~~~~~~~a~~------------------------~~l~--~~~~~~~~~~~~~~~~~~l~ 296 (391)
T 3h14_A 260 -F----------------ICAPHASQVAAL------------------------AALD--CDAELQANLDVYKANRKLML 296 (391)
T ss_dssp -T----------------CCCCHHHHHHHH------------------------HHTT--CHHHHHHHHHHHHHHHHHHH
T ss_pred -c----------------cCCCHHHHHHHH------------------------HHhC--ChHHHHHHHHHHHHHHHHHH
Confidence 0 011111122221 3444 12346778889999999999
Q ss_pred HHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 479 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 479 ~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
+.|.++ |. +.++.|. .+..+.+.+.+. + ++...+ +++++++||.++.|..|...
T Consensus 297 ~~l~~~------~~--~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~---------- 351 (391)
T 3h14_A 297 ERLPKA------GF--TRIAPPD----GAFYVYADVSDL-T--DDSRAFAAEILEKAGVAVTPGLDFDPE---------- 351 (391)
T ss_dssp HHHHHH------TC--CCBCCCC----BTTEEEEECTTT-C--SCHHHHHHHHHHHHCEECEEGGGTCTT----------
T ss_pred HHHHHc------CC--CcccCCC----eeEEEEEecCcc-C--CCHHHHHHHHHHHCCEEEcCchhhCCC----------
Confidence 999887 22 2222221 233444455431 1 345555 55677779999988666431
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||+|++. +.+||+.+++.|+++++.
T Consensus 352 -----------------------~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 352 -----------------------RGAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp -----------------------TGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 134699999998 789999999999988653
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-19 Score=192.45 Aligned_cols=298 Identities=10% Similarity=0.056 Sum_probs=200.8
Q ss_pred HHHHHHHHHH----cC--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDF----LN--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~----l~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.++++ +| ++++ .|+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.+
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~~--~v~~t~g~~~a~~~~~~~l-~~~gd~vl~~~p~~~~-----~~~~~~~~g~~~~~~ 140 (399)
T 1c7n_A 69 EEYKKTVKKWMKDRHQWDIQTD--WIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYP-----FFMAIKNQERKIIEC 140 (399)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTH-----HHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCChh--hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHh-----HHHHHHHcCCEEEec
Confidence 3566666666 47 4443 7999999999999999998 6789997764 35553 234456789999988
Q ss_pred eccCCc--cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCC--CC
Q 006746 246 EFSWPR--LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKD--MD 317 (632)
Q Consensus 246 ~~~~~~--~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~--m~ 317 (632)
+.++++ ..+++++|+++|++. +++++++++.+|+||..+| ++ |+++|+++|+++++|.++..... ..
T Consensus 141 ~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~ 215 (399)
T 1c7n_A 141 ELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYE 215 (399)
T ss_dssp CCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCC
T ss_pred ccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 875332 358999999999732 3588999999999999999 88 89999999999999999876210 01
Q ss_pred CCCCCC-----CCCcEEEEccccccCCCCCc--eEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 318 SFGLSL-----VRPDFLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 318 ~ldls~-----~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
..++.. .+.++++.|++|.+| +.| +|++++++ +.++.+.... ..|
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~l~~~~------------~~~------------- 268 (399)
T 1c7n_A 216 HTVFQSIDEQLADKTITFTAPSKTFN--IAGMGMSNIIIKNPDIRERFTKSR------------DAT------------- 268 (399)
T ss_dssp CCCGGGSCHHHHTTEEEEECSHHHHT--CGGGCCEEEECCCHHHHHHHHHHH------------HHT-------------
T ss_pred cccHHHcCccccCcEEEEEeChhhcc--ccchheEEEEECCHHHHHHHHHHH------------hhc-------------
Confidence 223322 345799999999998 446 69999874 3544332210 000
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 469 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r 469 (632)
+ .++.+.+...++. ++|+... ..++.+.++
T Consensus 269 -----------~--------------~~~~~~~~~~a~~------------------------~~l~~~~-~~~~~~~~~ 298 (399)
T 1c7n_A 269 -----------S--------------GMPFTTLGYKACE------------------------ICYKECG-KWLDGCIKV 298 (399)
T ss_dssp -----------T--------------CCCCCHHHHHHHH------------------------HHHHHCH-HHHHHHHHH
T ss_pred -----------c--------------cCCCCHHHHHHHH------------------------HHHhCCh-HHHHHHHHH
Confidence 0 0011111122221 4444321 246788888
Q ss_pred HHHHHHHHHHHHHc-cCCCCCCCCCcEEEECCCCCCCCCcEE-EEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCCh
Q 006746 470 GRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPAL-AFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHI 546 (632)
Q Consensus 470 ~~~L~~~L~~~L~~-l~h~~~~G~p~v~Iygp~~~~~rg~iv-aFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~ 546 (632)
.+.+.++|.+.|.+ + |.++++.| .++.+ .+.+.+. | ++...+.+ |++++||.++.|..|..
T Consensus 299 ~~~~~~~l~~~L~~~~--------~~~~~~~~-----~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~ 362 (399)
T 1c7n_A 299 IDKNQRIVKDFFEVNH--------PEIKAPLI-----EGTYLQWIDFRAL-K--MDHKAMEEFMIHKAQIFFDEGYIFGD 362 (399)
T ss_dssp HHHHHHHHHHHHHHHC--------TTSBCCCC-----SBSSEEEEECGGG-C--CCHHHHHHHHHHTTCCCCEEGGGGCG
T ss_pred HHHHHHHHHHHHHhhC--------CCCeEecC-----CceEEEEEEcccC-C--CCHHHHHHHHHHhCCEEEeCccccCC
Confidence 99999999999987 5 44555443 34544 4566531 1 35555554 54678999987754432
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.||+|++.. .++++.+++.|+++++.
T Consensus 363 ----------------------------------~~~~~iRis~~~~--~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 363 ----------------------------------GGIGFERINLAAP--SSVIQESLERLNKALKD 392 (399)
T ss_dssp ----------------------------------GGTTEEEEECCSC--HHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------CCCCeEEEEeccC--HHHHHHHHHHHHHHHHH
Confidence 0236899999875 79999999999988764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-20 Score=197.57 Aligned_cols=305 Identities=11% Similarity=0.129 Sum_probs=208.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.++.+++++.+++.++.+.+...|+||+|+++|+++++.++ .++||+|++ ...|++ ....++..|.+++.+|+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~-~~~gd~Vi~~~~~y~~-----~~~~~~~~g~~~~~~~~ 172 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF-SEKGDAVLINSPVYYP-----FARTIRLNDHRLVENSL 172 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-SCTEEEEEEEESCCHH-----HHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCcHH-----HHHHHHHCCCEEEeccc
Confidence 46778888899998884333338999999999999999998 688999765 445653 23345678999999998
Q ss_pred cC--CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc---chH-HHHHHhhCCcEEEEeccccC----CCC--
Q 006746 248 SW--PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY---PYL-WMRIAQENDWHILIDACALG----PKD-- 315 (632)
Q Consensus 248 ~~--~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~---pl~-i~~~a~~~g~~vlvDaaq~~----g~~-- 315 (632)
++ +...+|+++|+++|++. ++++|++++.+|+||..+ +++ |.++|+++|+++++|.+|.. |..
T Consensus 173 ~~~~~~~~~d~~~le~~i~~~-----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~ 247 (421)
T 3l8a_A 173 QIINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHH 247 (421)
T ss_dssp EEETTEEECCHHHHHHHHHHT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred cccCCCeeeCHHHHHHHhhcc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 62 33468999999999832 358999999999999884 677 88899999999999999875 211
Q ss_pred -CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 316 -MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 316 -m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
+..++.+..+.++++.|++|.+|.+...+|+++++ +++.+.+.+...
T Consensus 248 ~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~------------------------------- 296 (421)
T 3l8a_A 248 SLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQL------------------------------- 296 (421)
T ss_dssp CGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH-------------------------------
T ss_pred cHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHH-------------------------------
Confidence 11222222355699999999988321234888887 444333321000
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
..+ .+++|.+.+.++. ++|+...+ .++.+.++.+.+
T Consensus 297 -----~~~--------------~~~~n~~~~~a~~------------------------aal~~~~~-~~~~~~~~~~~~ 332 (421)
T 3l8a_A 297 -----ANN--------------QHEVPTVGMIATQ------------------------AAFQYGKP-WLEELKTVIEGN 332 (421)
T ss_dssp -----HTT--------------CSCCCHHHHHHHH------------------------HHHHHCHH-HHHHHHHHHHHH
T ss_pred -----hcc--------------cCCCCHHHHHHHH------------------------HHHhccHH-HHHHHHHHHHHH
Confidence 000 1122333333333 55553222 368888999999
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEE-EEEccCCCCccCH-HHHHHHHHhCCcEEccCccCChHHHhH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA-FNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~iva-Fnv~~~~G~~i~~-~~V~kla~~~gI~lr~G~~c~~~~~~~ 551 (632)
.++|.+.|.++ |.++++.|. ++.+. +.+... | ++. +.++++++++||.++.|..|..
T Consensus 333 ~~~l~~~L~~~--------~~i~~~~~~-----~~~~~~v~~~~~-~--~~~~~l~~~l~~~~gi~v~~g~~f~~----- 391 (421)
T 3l8a_A 333 IKLVIKELEAK--------TKIKVMEPE-----GTYLVWLDFSAY-A--IAQPQLSEKLQNEAKVVLNDGAHFGK----- 391 (421)
T ss_dssp HHHHHHHHHHH--------CSCEEECCS-----BSSEEEEECGGG-T--CCTTHHHHHHHHTTCEECEEGGGGCG-----
T ss_pred HHHHHHHHHhC--------CCceEeCCC-----eeEEEEEecccc-C--CCHHHHHHHHHHhCCEEEECchhhCC-----
Confidence 99999999887 557777653 44444 555431 1 233 4455566788999988754432
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+.++||+|++ ++.+||+.+++.|++.++
T Consensus 392 -----------------------------~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 392 -----------------------------EGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp -----------------------------GGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred -----------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 13469999998 699999999999998764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=193.85 Aligned_cols=296 Identities=10% Similarity=0.068 Sum_probs=194.7
Q ss_pred HHHHHHHHH----cCCCCCCccEEEeCCHHHHHHHHHhhCCCCCC-CeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDF----LNISENDYGMVFTANRTSAFKLLAESYPFMSV-KNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~----l~a~~~ey~vvft~naT~al~lv~~sl~~~~g-d~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.++++ +|.+.+...|+||+|+|+|+.+++.++ +++| |+|++. ..|++ ....++..|++++.++.
T Consensus 80 ~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l-~~~g~d~vl~~~p~~~~-----~~~~~~~~g~~~~~v~~ 153 (398)
T 3ele_A 80 ETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRAL-TSDAYDEFITIAPYFPE-----YKVFVNAAGARLVEVPA 153 (398)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-CCSTTCEEEEESSCCTH-----HHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHH-cCCCCCEEEEeCCCchh-----hHHHHHHcCCEEEEEec
Confidence 445555555 453222337999999999999999998 7899 997754 45553 23456778999999999
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhh------CCcEEEEeccccC----C
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQE------NDWHILIDACALG----P 313 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~------~g~~vlvDaaq~~----g 313 (632)
++.+..+++++|+++++++ ++++++++.+|+||..+| ++ |+++|++ +|+++++|.++.. +
T Consensus 154 ~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~ 227 (398)
T 3ele_A 154 DTEHFQIDFDALEERINAH------TRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDG 227 (398)
T ss_dssp CTTTSSCCHHHHHHTCCTT------EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTT
T ss_pred CCcCCcCCHHHHHHHhCcC------CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCC
Confidence 7555678999999988653 589999999999999999 45 6688888 8999999998765 2
Q ss_pred CCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 314 KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 314 ~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
.. .+...+..+.++++.|++|.+|.+..++|+++++++.++... ... . + .
T Consensus 228 ~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~--~~~-------~----~----------------~ 277 (398)
T 3ele_A 228 IK-VPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAE--LYA-------A----V----------------C 277 (398)
T ss_dssp CC-CCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHH--HHH-------H----H----------------H
T ss_pred CC-cCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHH--HHH-------H----H----------------H
Confidence 11 233334566789999999999843345899999887643110 000 0 0 0
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.. ... .++.+.+.+... .+...++... ..++.+..
T Consensus 278 ~~---~~~--------------~~~~~~~~~~~~-------------------------a~~~~l~~~~---~~~~~~~~ 312 (398)
T 3ele_A 278 GA---GRA--------------LGYVCAPSLFQK-------------------------MIVKCQGATG---DINAYKEN 312 (398)
T ss_dssp HH---HHH--------------TTCCCSCHHHHH-------------------------HHTTCTTCCC---CHHHHHHH
T ss_pred HH---hhh--------------ccccCCCHHHHH-------------------------HHHHHhcCHH---HHHHHHHH
Confidence 00 000 000001101100 1111111111 24566777
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
.+++.+.|.++ | ++++.|. .+-.+.+.+.+ .+...+.+.+.++||.++.|..|.
T Consensus 313 ~~~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~-------- 366 (398)
T 3ele_A 313 RDLLYEGLTRI------G---YHCFKPD----GAFYMFVKALE-----DDSNAFCEKAKEEDVLIVAADGFG-------- 366 (398)
T ss_dssp HHHHHHHHHHH------T---CCEECCS----BSSEEEEECSS-----SCHHHHHHHHHTTTEECEESGGGT--------
T ss_pred HHHHHHHHHHc------C---CeecCCC----eeEEEEEEcCC-----CCHHHHHHHHHHCCEEEeCccccC--------
Confidence 78888888877 4 3445442 23336666554 356677777788999998774332
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|++ ++.|||+++++.|+++++.
T Consensus 367 ----------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 367 ----------------------------CPGWVRISYC--VDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp ----------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 1359999997 7999999999999998764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-21 Score=209.25 Aligned_cols=165 Identities=10% Similarity=0.104 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
...+++++.+++++|++ ++++++|+++|+.+++. + +++||+|++. ..|++ ....+...++..|++++.++.+
T Consensus 133 ~~~~~l~~~la~~~g~~----~~i~~~sGt~al~~~l~-~-~~~Gd~Vi~~~~~y~~-~~~~~~~~~~~~G~~v~~v~~~ 205 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD----RAFCFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGG-SDRLLSQVVPRSGVVVKRVNTT 205 (464)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHT-T-SCTTCEEEEESSCCHH-HHHHHHHTSGGGTCEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHH-H-hCCCCEEEEECCCchh-HHHHHHHHHHHcCCEEEEeCCC
Confidence 46789999999999974 47777888999998886 4 6899997755 45654 3333334457789999998763
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
+.++|+++|+++ ++++.+++.+|+||..+|++ |+++|+++|+++++|.+++.|....+++ +++|
T Consensus 206 ------d~~~l~~~i~~~------tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~---~~~d 270 (464)
T 1ibj_A 206 ------KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE---LGAD 270 (464)
T ss_dssp ------SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG---TTCS
T ss_pred ------CHHHHHHHhccC------ceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---cCCE
Confidence 788999888653 59999999999999999999 9999999999999999998775212443 5789
Q ss_pred EEEEccccccCCCCCce--EEEEEeC-CCcccc
Q 006746 328 FLICSFYQIFGENPSGF--GCLFVKK-STVPIL 357 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~--G~L~Vr~-~~~~~L 357 (632)
+++.|++|++|. |.|+ |++++++ +.++.+
T Consensus 271 iv~~S~sK~~~g-~~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 271 IVMHSATKFIAG-HSDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp EEEEETTTTTTC-SSCCCCEEEEECSHHHHHHH
T ss_pred EEEECCcccccC-CCCCcEEEEEEChHHHHHHH
Confidence 999999997764 7787 9999986 444433
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-20 Score=196.29 Aligned_cols=303 Identities=13% Similarity=0.098 Sum_probs=203.5
Q ss_pred HHHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 173 SAMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.|+.+++++ |.+.+...|+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.++.
T Consensus 78 ~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~-~~~gd~vl~~~p~~~~-----~~~~~~~~g~~~~~v~~ 151 (407)
T 2zc0_A 78 PELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVL-IDPGDVVITENPSYIN-----TLLAFEQLGAKIEGVPV 151 (407)
T ss_dssp HHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHH-----HHHHHHHcCCEEEEccc
Confidence 46788888887 84333337999999999999999998 6789997654 45553 23445778999999998
Q ss_pred cCCccccCHHHHHHHHH----hcCcCCCceeEE-EEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCC--C
Q 006746 248 SWPRLRINSEKLRKMVV----SKGKKKKQRGLF-VFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKD--M 316 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~----~~~~~~~~~~Lv-~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~--m 316 (632)
+ +++ +++++|+++++ +. .+++++ ++++.+|+||..+|++ |+++|+++|+++++|.++....- .
T Consensus 152 ~-~~~-~d~~~l~~~l~~~~~~~----~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~ 225 (407)
T 2zc0_A 152 D-NDG-MRVDLLEEKIKELKAKG----QKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG 225 (407)
T ss_dssp E-TTE-ECHHHHHHHHHHHHHTT----CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS
T ss_pred C-CCC-CCHHHHHHHHHhhhccc----CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC
Confidence 7 344 89999999997 41 135776 6889999999999983 67889999999999999876320 0
Q ss_pred CCCCCC---CCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 317 DSFGLS---LVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 317 ~~ldls---~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
....+. ..+.++++.|++|++| | ..+|+++++++.++.+...... |.
T Consensus 226 ~~~~~~~~~~~~~~i~~~s~sK~~~--~G~r~G~~~~~~~~~~~~~~~~~~------------~~--------------- 276 (407)
T 2zc0_A 226 DIVPLKALDNEGRVIVAGTLSKVLG--TGFRIGWIIAEGEILKKVLMQKQP------------ID--------------- 276 (407)
T ss_dssp SCCCGGGGCSSCCEEEEEESTTTTC--TTSCCEEEECCHHHHHHHHHHHTT------------TT---------------
T ss_pred CCCChhhcCCCCCEEEEcccccccC--CCcceEEEecCHHHHHHHHHHHHh------------hc---------------
Confidence 111222 2245689999999999 4 2489999887665444321000 00
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHH-Hh-hCHHHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV-DS-LGLTMISRRG 470 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~-~~-~Gl~~I~~r~ 470 (632)
.++ +.+...++. .+|+.. .. ..++.+.++.
T Consensus 277 -------~~~-----------------~~~~~~~~~------------------------~~l~~~~~~~~~~~~~~~~~ 308 (407)
T 2zc0_A 277 -------FCA-----------------PAISQYIAL------------------------EYLKRGYFEKYHLEGALLGY 308 (407)
T ss_dssp -------SSS-----------------CHHHHHHHH------------------------HHHHTTHHHHHTTTTHHHHH
T ss_pred -------CCC-----------------CHHHHHHHH------------------------HHHHcCCchHHHHHHHHHHH
Confidence 000 000011111 333321 11 3567788888
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHH-HHHHhCCcEEccCccCChHHH
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQ-KLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~-kla~~~gI~lr~G~~c~~~~~ 549 (632)
+.+.++|.+.|.++ .|.++++.|. .+..+.+.+.+ | ++...+. +|++++||.++.|..|...
T Consensus 309 ~~~~~~l~~~L~~~-------~~~~~~~~~~----~~~~~~~~~~~--~--~~~~~l~~~l~~~~gi~v~~g~~~~~~-- 371 (407)
T 2zc0_A 309 KEKRDIMLKALENH-------LPNAEFTKPI----AGMFVMFFLPE--G--ADGISFANELMEREGVVVVPGKPFYTD-- 371 (407)
T ss_dssp HHHHHHHHHHHHHH-------CTTSCBCCCS----BSSEEEEECST--T--CCHHHHHHHHHHHTCEECBCSGGGCSS--
T ss_pred HHHHHHHHHHHHHh-------CCCCEEecCC----CcEEEEEEcCC--C--CCHHHHHHHHHHhCCeEEECchhccCC--
Confidence 99999999999874 1444554442 35567777653 1 4555555 4555559999987544321
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+.||+|++.. |.+||+++++.|++.++.
T Consensus 372 ------------------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 372 ------------------------------ESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp ------------------------------SCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 11246999999988 899999999999998764
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-20 Score=196.48 Aligned_cols=346 Identities=12% Similarity=0.065 Sum_probs=216.2
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccc-hhHHHHHHHHHHHHHcCCCCCCccEE
Q 006746 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYGMV 193 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~-~~~~~~~~R~~ia~~l~a~~~ey~vv 193 (632)
++..++++.+++++.+.+... |..+++.+.+..+.. ...+.+.+|+.+++++|++++ .|+
T Consensus 32 ~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~i~ 92 (417)
T 3n0l_A 32 ASENFTLPEVMEVMGSILTNK-----------------YAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA--NVQ 92 (417)
T ss_dssp TTCCCCCHHHHHHHTBGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECC
T ss_pred cccCCCCHHHHHHHhhhhhcc-----------------ccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc--ceE
Confidence 455667999999987654211 011333322211221 235556788999999999754 466
Q ss_pred EeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCc
Q 006746 194 FTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ 272 (632)
Q Consensus 194 ft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~ 272 (632)
+|++ |+|+.+++.++ +++||+|++. ..|++....+..-.....++.+..++++ .++.+|+++|+++|++. +
T Consensus 93 ~~sG-t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~ 164 (417)
T 3n0l_A 93 PNSG-SQANQGVYAAL-INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-LDGRIDYEKVREIAKKE-----K 164 (417)
T ss_dssp CSSH-HHHHHHHHHHH-SCTTCEEEEECC----------------CCSEEEEECCC-TTSSCCHHHHHHHHHHH-----C
T ss_pred eccH-HHHHHHHHHHh-cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC-CCCCcCHHHHHHHHHhc-----C
Confidence 6655 89999999999 8999997654 4665421212111112245666777777 67779999999999842 2
Q ss_pred eeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC---CCCCCCCCCCCcEEEEccccccCCCCCceEEEE
Q 006746 273 RGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLF 348 (632)
Q Consensus 273 ~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~---m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~ 348 (632)
++++++.+.+ +|...|++ |.++|+++|+++++|.+|+.|.. ..+..+. .+|++++|+||.++. |.| |+++
T Consensus 165 ~~~v~~~~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g-~~~-G~~~ 238 (417)
T 3n0l_A 165 PKLIVCGASA--YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRG-PRG-GIIM 238 (417)
T ss_dssp CSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCS-CSC-EEEE
T ss_pred CeEEEECCcc--cCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCC-CCe-eEEE
Confidence 4778766655 49999999 99999999999999999865320 0122222 579999999996654 765 8888
Q ss_pred EeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHh
Q 006746 349 VKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV 427 (632)
Q Consensus 349 Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l 427 (632)
.++ +..+.+...... ++ .|+++...+.++
T Consensus 239 ~~~~~~~~~~~~~~~~-------------------------------------~~-------------~~~~~~~~~aa~ 268 (417)
T 3n0l_A 239 TNDEELAKKINSAIFP-------------------------------------GI-------------QGGPLMHVIAAK 268 (417)
T ss_dssp ESCHHHHHHHHHHHTT-------------------------------------TT-------------CSSCCHHHHHHH
T ss_pred ECCHHHHHHHhhhhCC-------------------------------------cc-------------cCCcHHHHHHHH
Confidence 873 444333221100 00 112222333333
Q ss_pred hhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCC
Q 006746 428 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG 507 (632)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg 507 (632)
. .+++.....+++.+.++.+.+.++|.+.|.++ | ++++.+. ..+
T Consensus 269 ~------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~~ 312 (417)
T 3n0l_A 269 A------------------------VGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR------K---FKLVSDG---TDN 312 (417)
T ss_dssp H------------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---CSS
T ss_pred H------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC------C---ceeccCC---CCc
Confidence 3 45554433457788889999999999999885 3 3444321 234
Q ss_pred cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEE
Q 006746 508 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT 587 (632)
Q Consensus 508 ~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VR 587 (632)
.++.+.+.+ ..++...+.+++.++||.++.+.. +.. . ........+|
T Consensus 313 ~~~~~~~~~---~~~~~~~~~~~l~~~gi~v~~~~~--~~~-----------------------~-----~~~~~~~~~r 359 (417)
T 3n0l_A 313 HLVLMSFLD---REFSGKDADLALGNAGITANKNTV--PGE-----------------------I-----RSPFITSGLR 359 (417)
T ss_dssp SEEEEECTT---SSSCHHHHHHHHHHTTEECEECCC--TTC-----------------------C-----SCTTTCSEEE
T ss_pred eEEEEEccc---CCCCHHHHHHHHHHcCeEEecccc--CCC-----------------------C-----cccCCCCeeE
Confidence 455555543 125778888888899999985421 100 0 0112335799
Q ss_pred EccCCCC----CHHHHHHHHHHHHHhhhh
Q 006746 588 ASLGYLA----NFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 588 vSlg~~~----t~eDV~rlv~~l~~~l~~ 612 (632)
+++..++ +.+||+++++.|++.|+.
T Consensus 360 i~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 360 LGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp EECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 9987654 589999999999998865
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-20 Score=196.69 Aligned_cols=297 Identities=12% Similarity=0.068 Sum_probs=195.6
Q ss_pred HHHHHHHHHHcC----CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 173 SAMKKRIMDFLN----ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 173 ~~~R~~ia~~l~----a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.|+.++++++ .+.+...|++|+|+|+|+.+++.++ +++||+|++ ...|++ . ...++..|++++.++.
T Consensus 82 ~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~----~~~~~~~g~~~~~v~~ 155 (409)
T 2gb3_A 82 WELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI-ANPGDEILVLEPFYAN-Y----NAFAKIAGVKLIPVTR 155 (409)
T ss_dssp HHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH-H----HHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCchh-H----HHHHHHcCCEEEEecc
Confidence 356777777764 2222237999999999999999998 788999765 456664 2 2345668999999998
Q ss_pred cC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCCC-CCCC-
Q 006746 248 SW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKDM-DSFG- 320 (632)
Q Consensus 248 ~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~m-~~ld- 320 (632)
+. .+..+ +++|++++++ +++++++++.+|+||..+| ++ |+++|+++|+++++|.++..+..- ..+.
T Consensus 156 ~~~~~~~~-~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~ 228 (409)
T 2gb3_A 156 RMEEGFAI-PQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA 228 (409)
T ss_dssp CGGGTSCC-CTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG
T ss_pred CCCCCCcc-HHHHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc
Confidence 73 12233 6777776654 3588999999999999986 66 889999999999999998764210 0122
Q ss_pred CCC-CCCcEEEEccccccCCCCCc--eEEEEEeC-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 321 LSL-VRPDFLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 321 ls~-~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
+.. .+.|+++.|++|++| +.| +|++++++ +.++.+.....
T Consensus 229 ~~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~l~~~l~~~~~---------------------------------- 272 (409)
T 2gb3_A 229 LSIESDKVVVIDSVSKKFS--ACGARVGCLITRNEELISHAMKLAQ---------------------------------- 272 (409)
T ss_dssp GGSCCTTEEEEEESTTTTT--CGGGCCEEEECSCHHHHHHHHHHHH----------------------------------
T ss_pred cccCCCCEEEEecchhccC--CccceEEEEEECcHHHHHHHHHHHh----------------------------------
Confidence 232 367999999999999 557 89999988 66544422100
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
..+ +.+.+...++. ++|+.. ..+++.+.++.+.+.++
T Consensus 273 ---~~~---------------~~~~~~~~a~~------------------------~~l~~~-~~~~~~~~~~~~~~~~~ 309 (409)
T 2gb3_A 273 ---GRL---------------APPLLEQIGSV------------------------GLLNLD-DSFFDFVRETYRERVET 309 (409)
T ss_dssp ---HSC---------------CCCHHHHHHHH------------------------HHHTCC-HHHHHHHHHHHHHHHHH
T ss_pred ---ccC---------------CCCHHHHHHHH------------------------HHHhcc-HHHHHHHHHHHHHHHHH
Confidence 000 00111111111 344221 12467788889999999
Q ss_pred HHHHHHccCCCCCCCCCcEEE-ECCCCCCCCCcEEEEEEccCCCCccCHHHHH-HHHHh-----CCcEEccCccCChHHH
Q 006746 477 LVNALMKLQHPNTEGNALVKI-YGPKIRFDRGPALAFNVFDWKREKIEPVLVQ-KLADR-----ENISLSYGSLHHIWFS 549 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~I-ygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~-kla~~-----~gI~lr~G~~c~~~~~ 549 (632)
+.+.|.++ |. ++ +.|. .+..+.+.+.+ .+...+. +|+++ +||.++.|..|...
T Consensus 310 l~~~L~~~------g~---~~~~~~~----~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~-- 369 (409)
T 2gb3_A 310 VLKKLEEH------GL---KRFTKPS----GAFYITAELPV-----EDAEEFARWMLTDFNMDGETTMVAPLRGFYLT-- 369 (409)
T ss_dssp HHHHHHHT------TC---CCBCCCS----BSSEEEEECSS-----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--
T ss_pred HHHHHHHc------Cc---eeeeCCC----eeEEEEEEeCC-----CCHHHHHHHHHhccccccCcEEEeCchHhCCC--
Confidence 99999886 32 23 2331 23334335542 3555555 45555 49999876433210
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.+.||+|++ ++.+||+++++.|+++++.
T Consensus 370 -----------------------------~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 370 -----------------------------PGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp -----------------------------TTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 0113469999999 8999999999999998764
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=198.00 Aligned_cols=297 Identities=13% Similarity=0.062 Sum_probs=199.1
Q ss_pred HHHHHHHHHHc----CCCCCC-ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 173 SAMKKRIMDFL----NISEND-YGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~e-y~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+.|+.|++++ |.+.+. ..|+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.++
T Consensus 78 ~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~-~~~gd~Vl~~~p~~~~-----~~~~~~~~g~~~~~~~ 151 (412)
T 2x5d_A 78 PRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT-LDHGDTILVPNPSYPI-----HIYGAVIAGAQVRSVP 151 (412)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh-----HHHHHHHcCCEEEEee
Confidence 46788888887 863221 37999999999999999998 6889997654 46653 2334566899999999
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccCCCC--CCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALGPKD--MDSF 319 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~g~~--m~~l 319 (632)
.+.. ...+|+++|+++++++ ++++++++.+|+||..+|. + |+++|+++|+++++|.++....- -...
T Consensus 152 ~~~~~~~~~d~~~l~~~i~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 225 (412)
T 2x5d_A 152 LVPGIDFFNELERAIRESIPK------PRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAP 225 (412)
T ss_dssp CSTTSCHHHHHHHHHHTEESC------CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred cCCccCCCCCHHHHHHhcccC------ceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCC
Confidence 8743 2236788888877643 4788899999999999984 5 78899999999999999876320 0112
Q ss_pred CCCC----CCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 320 GLSL----VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 320 dls~----~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
++.. .+.|+++.|++|+|| +.| +|+++++++.++.+.....
T Consensus 226 ~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~------------------------------- 272 (412)
T 2x5d_A 226 SIMQVPGAKDIAVEFFTLSKSYN--MAGWRIGFMVGNPELVSALARIKS------------------------------- 272 (412)
T ss_dssp CGGGSTTGGGTEEEEEECC-CCS--CTTSCCEEEEECHHHHHHHHHHHH-------------------------------
T ss_pred ChhhccCccCcEEEEecCccccC--CcccceEEEEcCHHHHHHHHHHHh-------------------------------
Confidence 2221 467999999999998 446 6999998766544432100
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
. .. .+.+.+...++. ++|+... ..++.+.++.+.+
T Consensus 273 -~---~~----------------~~~~~~~~~a~~------------------------~~l~~~~-~~~~~~~~~~~~~ 307 (412)
T 2x5d_A 273 -Y---HD----------------YGTFTPLQVAAI------------------------AALEGDQ-QCVRDIARQYQQR 307 (412)
T ss_dssp -H---HC----------------CCCCHHHHHHHH------------------------HHHHSCS-HHHHHHHHHHHHH
T ss_pred -h---hc----------------cCCCHHHHHHHH------------------------HHHhCCH-HHHHHHHHHHHHH
Confidence 0 00 001111112111 3333211 1367788889999
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCcc---CHHHH-HHHHHhCCcEEccCccCChHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI---EPVLV-QKLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i---~~~~V-~kla~~~gI~lr~G~~c~~~~~ 549 (632)
.+++.+.|.++ |. +++.| ..+..+.+.+.+ + + +...+ ++|++++||.++.|..|..
T Consensus 308 ~~~l~~~L~~~------g~---~~~~~----~~g~~~~~~~~~--~--~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--- 367 (412)
T 2x5d_A 308 RDVLVKGLREA------GW---MVENP----KASMYVWAKIPE--P--YAHLGSLEFAKKLLQDAKVSVSPGIGFGD--- 367 (412)
T ss_dssp HHHHHHHHHHH------TC---CCCCC----SBSSEEEEECCT--T--TGGGCHHHHHHHHHHHHCEECEEGGGGCG---
T ss_pred HHHHHHHHHHC------CC---EecCC----CeeeEEEEEcCC--c--cCCCCHHHHHHHHHHHCCEEEeCchhhCC---
Confidence 99999999887 32 23332 123356666642 1 2 34444 4566778999987754421
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||+|++. +.+|++.+++.|+++++.
T Consensus 368 -------------------------------~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~ 397 (412)
T 2x5d_A 368 -------------------------------YGDDHVRFALIE--NRDRLRQAVRGIKAMFRA 397 (412)
T ss_dssp -------------------------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 123689999997 899999999999998876
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=193.92 Aligned_cols=327 Identities=13% Similarity=0.080 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+.+.|++|+++++++ .|+||+|+|+|+.+++.++. +||+|++ ...|++ .. ..++..|++++.++++
T Consensus 52 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~l~~l~--~gd~Vlv~~~~~~~-~~----~~~~~~G~~~~~v~~~ 120 (424)
T 2po3_A 52 PLVREFEERVAGLAGVR----HAVATCNATAGLQLLAHAAG--LTGEVIMPSMTFAA-TP----HALRWIGLTPVFADID 120 (424)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHHT--CCSEEEEESSSCTH-HH----HHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcC--CCCEEEECCCccHH-HH----HHHHHcCCEEEEEecC
Confidence 45678999999999984 69999999999999999984 6888765 457764 22 2456689999999997
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
..++.+|+++|+++|+++ ++++++.+ +||...|++ |.++|+++|+++++|+++..|.....-.+..+ +|
T Consensus 121 ~~~~~~d~~~l~~~i~~~------~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~d 190 (424)
T 2po3_A 121 PDTGNLDPDQVAAAVTPR------TSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GD 190 (424)
T ss_dssp TTTSSBCHHHHGGGCCTT------EEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SS
T ss_pred CCcCCcCHHHHHHhhCcC------CcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccc-cC
Confidence 446778999998887643 57887754 799999999 99999999999999999986541110111112 58
Q ss_pred EEEEccc--cccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccC
Q 006746 328 FLICSFY--QIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 404 (632)
Q Consensus 328 f~~~S~h--K~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~ 404 (632)
++++|++ |.++ |...|+++.+ ++.++.+.+....|... .|. .. ..|...
T Consensus 191 i~~~S~sk~K~l~--~~~~G~~v~~~~~l~~~l~~~~~~~~~~-------~~~--------~~-----------~~g~~~ 242 (424)
T 2po3_A 191 AEVFSFHATKAVN--AFEGGAVVTDDADLAARIRALHNFGFDL-------PGG--------SP-----------AGGTNA 242 (424)
T ss_dssp EEEEECCTTSSSC--CSSCEEEEESCHHHHHHHHHHHBTTTTC-------TTC--------CT-----------TCCCBC
T ss_pred EEEEeCCCCCCcc--CCCCeEEEeCCHHHHHHHHHHHhcCccc-------ccc--------cc-----------ccCcCC
Confidence 9999998 6776 6456777777 45555444321111000 000 00 001000
Q ss_pred CCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Q 006746 405 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL 484 (632)
Q Consensus 405 f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l 484 (632)
.+..+.+. .++..+ .+++.+.+|.+.+.++|.+.|.++
T Consensus 243 ---------------~~~~~~aa-------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~ 280 (424)
T 2po3_A 243 ---------------KMSEAAAA-------------------------MGLTSL--DAFPEVIDRNRRNHAAYREHLADL 280 (424)
T ss_dssp ---------------CCCHHHHH-------------------------HHHHHH--HHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred ---------------CcCHHHHH-------------------------HHHHHH--HHHHHHHHHHHHHHHHHHHHhccC
Confidence 00111111 233222 246778899999999999999876
Q ss_pred CCCCCCCCCcEEEECCCCCCCC-CcEEEEEEccCC-CCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhh
Q 006746 485 QHPNTEGNALVKIYGPKIRFDR-GPALAFNVFDWK-REKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK 562 (632)
Q Consensus 485 ~h~~~~G~p~v~Iygp~~~~~r-g~ivaFnv~~~~-G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~ 562 (632)
|.++++.+...... ..++.+.+.+.. | ++...+.+.+.++||.++.. |.+.... . ..+..
T Consensus 281 --------~g~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~L~~~gI~v~~~--~~~~~~~-~-----~~~~~ 342 (424)
T 2po3_A 281 --------PGVLVADHDRHGLNNHQYVIVEIDEATTG--IHRDLVMEVLKAEGVHTRAY--FSPGCHE-L-----EPYRG 342 (424)
T ss_dssp --------TTEEECCGGGGSCCCCCCEEEEECHHHHS--SCHHHHHHHHHHTTEECBCT--TCSCGGG-S-----TTTTT
T ss_pred --------CCccccCCCCCCccccEEEEEEECCccch--hhHHHHHHHHHHCCCceecc--cCCcccc-c-----hhhhh
Confidence 56888763211112 357777775200 1 46777877888899999863 3211100 0 00000
Q ss_pred hhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 563 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
. +.....+. .......||++++.++|.+||+++++.|+++++.
T Consensus 343 ~---g~~~~~~~----~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 343 Q---PHAPLPHT----ERLAARVLSLPTGTAIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp S---CCCCCHHH----HHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred c---CCCCChhH----HHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0 00000000 0001235999999999999999999999998765
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=195.54 Aligned_cols=317 Identities=10% Similarity=0.043 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
..+.+.|+++++++|++ .++||+|+|+|+.+++.++.+++||+|++ ...|++ + ...++..|++++.++++
T Consensus 35 ~~~~~l~~~la~~~~~~----~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~--~---~~~~~~~G~~~~~~~~~ 105 (367)
T 3nyt_A 35 PEVTELEDRLADFVGAK----YCISCANGTDALQIVQMALGVGPGDEVITPGFTYVA--T---AETVALLGAKPVYVDID 105 (367)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH--H---HHHHHHTTCEEEEECBC
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHH--H---HHHHHHcCCEEEEEecC
Confidence 45678999999999986 58999999999999999998889999765 456664 2 23356789999999998
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC-
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP- 326 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~- 326 (632)
..++.+|+++|+++|+++ +++|+ .+|+||...|++ |.++|+++|+++++|++|+.|.. .+....+.
T Consensus 106 ~~~~~~d~~~l~~~i~~~------~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~---~~~~~~~~~ 173 (367)
T 3nyt_A 106 PRTYNLDPQLLEAAITPR------TKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGAS---YKGKRSCNL 173 (367)
T ss_dssp TTTCSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCE---ETTEETTSS
T ss_pred CccCCcCHHHHHHhcCcC------CcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCe---ECCeeccCC
Confidence 555789999999888653 46666 567999999999 99999999999999999987652 22222222
Q ss_pred -cEEEEcc--ccccCCCCCceEEEEEe-C-CCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 327 -DFLICSF--YQIFGENPSGFGCLFVK-K-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 327 -Df~~~S~--hK~~G~~P~G~G~L~Vr-~-~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
|++++|| +|++| +.|.|.+++. + +..+.+.+....|... .++.. ..|
T Consensus 174 ~di~~~Sf~~~K~l~--~~g~gg~~~~~~~~l~~~~~~~~~~g~~~------~~~~~--------------------~~g 225 (367)
T 3nyt_A 174 STVACTSFFPSAPLG--CYGDGGAIFTNDDELATAIRQIARHGQDR------RYHHI--------------------RVG 225 (367)
T ss_dssp SSEEEEECCTTSSSC--CSSCCEEEEESCHHHHHHHHHHTBTTEEE------TTEEC--------------------SCC
T ss_pred CCEEEEECCCCCcCC--CcCceeEEEeCCHHHHHHHHHHHhcCCCc------Cceee--------------------ccC
Confidence 9999997 79999 5454444444 3 3334443322112210 00000 001
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
.. + ....+.+. .++..++ .++.+.+|.+.+.+++.+.|
T Consensus 226 ~~-~--------------~~~~~~aa-------------------------~~~~~l~--~~~~~~~~~~~~~~~~~~~L 263 (367)
T 3nyt_A 226 VN-S--------------RLDTLQAA-------------------------ILLPKLE--IFEEEIALRQKVAAEYDLSL 263 (367)
T ss_dssp CB-C--------------CCCHHHHH-------------------------HHHHHHH--THHHHHHHHHHHHHHHHHHH
T ss_pred cC-C--------------CccHHHHH-------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 10 0 00111110 2222232 46778889999999999999
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCC-CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~r-g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
.++ | +++......... ..++.+.+. +.+.+.+.+.++||.++.++.+.......+..
T Consensus 264 ~~~------~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~------ 321 (367)
T 3nyt_A 264 KQV------G---IGTPFIEVNNISVYAQYTVRMD-------NRESVQASLKAAGVPTAVHYPIPLNKQPAVAD------ 321 (367)
T ss_dssp HHT------T---CCCCCCCTTEECCCSSEEEECS-------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCC------
T ss_pred ccC------C---eeccCCCCCCceeeEEEEEEeC-------CHHHHHHHHHHCCCceeccCCCccccChhhhc------
Confidence 987 2 111111100011 122333222 45667777777899999875322211111100
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
....+... .......||++++..+|.+||+++++.|+++
T Consensus 322 -~~~~~~~~---------~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 322 -EKAKLPVG---------DKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp -TTCCCHHH---------HHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred -cCCCChHH---------HHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 00000000 0112369999999999999999999998764
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=197.59 Aligned_cols=297 Identities=13% Similarity=0.049 Sum_probs=201.8
Q ss_pred HHHHHHHHHHc----CCCCCC-ccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 173 SAMKKRIMDFL----NISEND-YGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~e-y~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+.|+.|++++ |++.+. ..|+||+|+|+|+.+++.++ .++||+|++ ...|++ . ...++..|++++.++
T Consensus 88 ~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~-~----~~~~~~~g~~~~~v~ 161 (404)
T 2o1b_A 88 EAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV-INPGDYVLLPDPGYTD-Y----LAGVLLADGKPVPLN 161 (404)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCSS-H----HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHh-cCCCCEEEEcCCCchh-H----HHHHHHCCCEEEEec
Confidence 46777888877 875221 37999999999999999998 678999765 456664 2 234567899999999
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCC-CCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKD-MDSFGL 321 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~-m~~ldl 321 (632)
.+.....+|+++|+++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++..... -.+.++
T Consensus 162 ~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~ 235 (404)
T 2o1b_A 162 LEPPHYLPDWSKVDSQIIDK------TKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSI 235 (404)
T ss_dssp CCTTTCCCCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCG
T ss_pred cCcccCcCCHHHHHHhhccC------ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCh
Confidence 87423347889999888654 489999999999999997 56 78899999999999999876320 012222
Q ss_pred C----CCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 322 S----LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 322 s----~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
. ..+.|+++.|++|+||. .| +|+++++++.++.+..... .|
T Consensus 236 ~~~~~~~~~~i~~~s~sK~~g~--~G~r~G~~~~~~~~~~~l~~~~~------------~~------------------- 282 (404)
T 2o1b_A 236 LASENGKDVAIEIYSLSKGYNM--SGFRVGFAVGNKDMIQALKKYQT------------HT------------------- 282 (404)
T ss_dssp GGSTTHHHHEEEEEESTTTTTC--GGGCCEEEEECHHHHHHHHHHHH------------HH-------------------
T ss_pred hhcCCCCCCEEEEEecchhccC--chhheEeEecCHHHHHHHHHHHh------------hc-------------------
Confidence 1 12568999999999983 46 6999887766544422100 00
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~ 475 (632)
. ++.+.+...++. ++|+.. ...++.+.++.+.+.+
T Consensus 283 ----~----------------~~~~~~~~~a~~------------------------~~l~~~-~~~~~~~~~~~~~~~~ 317 (404)
T 2o1b_A 283 ----N----------------AGMFGALQDAAI------------------------YALNHY-DDFLEEQSNVFKTRRD 317 (404)
T ss_dssp ----C----------------CCCCHHHHHHHH------------------------HHHHHC-HHHHHHHHHHHHHHHH
T ss_pred ----c----------------CCCCHHHHHHHH------------------------HHHhcC-HHHHHHHHHHHHHHHH
Confidence 0 001111112221 444432 1246778888999999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
+|.+.|.++ | ++++.|. .+-.+.+.+.+ + ++...+ +++++++||.++.|..|..
T Consensus 318 ~l~~~L~~~------g---~~~~~~~----~g~~~~~~~~~--~--~~~~~l~~~l~~~~gi~v~~g~~f~~-------- 372 (404)
T 2o1b_A 318 RFEAMLAKA------D---LPFVHAK----GGIYVWLETPP--G--YDSEQFEQFLVQEKSILVAPGKPFGE-------- 372 (404)
T ss_dssp HHHHHHHHT------T---CCEECCC----BSSEEEEECCT--T--CCHHHHHHHHHHHHCEECEESGGGCG--------
T ss_pred HHHHHHHhc------C---CeecCCC----cceEEEEeCCC--C--CCHHHHHHHHHHHCCEEEeCchhhCc--------
Confidence 999999886 3 3444442 23345666642 1 344444 5566678999998754431
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+.||+|++. +.+|++++++.|+++++.
T Consensus 373 --------------------------~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 373 --------------------------NGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp --------------------------GGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred --------------------------CCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 023589999996 789999999999988754
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=193.36 Aligned_cols=296 Identities=11% Similarity=0.050 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHc----CCCCCCc-cEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEE
Q 006746 171 LESAMKKRIMDFL----NISENDY-GMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 171 ~~~~~R~~ia~~l----~a~~~ey-~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
-..+.|+.|++++ |++.+.. .|+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.
T Consensus 64 ~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~p~y~~-----~~~~~~~~g~~~~~ 137 (376)
T 2dou_A 64 CTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLAL-TEPEDLLLLPEVAYPS-----YFGAARVASLRTFL 137 (376)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCHH-----HHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh-cCCCCEEEECCCCcHh-----HHHHHHHcCCEEEE
Confidence 3467888888888 8763222 7999999999999999998 6789997754 45553 23445678999999
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccCCC----CC
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALGPK----DM 316 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~g~----~m 316 (632)
++.+ ....+|.++|++++.++ ++++++++.+|+||..+|. + |+++|+++|+++++|.++.... ..
T Consensus 138 ~~~~-~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 210 (376)
T 2dou_A 138 IPLR-EDGLADLKAVPEGVWRE------AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAP 210 (376)
T ss_dssp ECBC-TTSSBCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCC
T ss_pred eeCC-CCCCCCHHHHHHhhccC------ceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9883 34457888998888654 4899999999999999984 5 7788999999999999987531 00
Q ss_pred CCCCC-CCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 317 DSFGL-SLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 317 ~~ldl-s~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
..+++ ...+.++++.|++|.+| +.| +|+++.+++.++.+..... .|
T Consensus 211 ~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~------------~~----------------- 259 (376)
T 2dou_A 211 SPLALPGAKERVVELFSLSKSYN--LAGFRLGFALGSEEALARLERVKG------------VI----------------- 259 (376)
T ss_dssp CGGGSTTGGGTEEEEEEHHHHHT--CGGGCCEEEEECHHHHHHHHHHHH------------HH-----------------
T ss_pred ChhhcCCCCCcEEEEecchhhcC--ChhheeEEEecCHHHHHHHHHHHH------------hc-----------------
Confidence 11222 22456899999999998 446 6999887766544422100 00
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.. +.+.+...++. ++|+.. ...++.+.++.+.+
T Consensus 260 ------~~----------------~~~~~~~~a~~------------------------~~l~~~-~~~~~~~~~~~~~~ 292 (376)
T 2dou_A 260 ------DF----------------NQYAGVLRMGV------------------------EALKTP-KEVVRGYARVYRER 292 (376)
T ss_dssp ------CC----------------CSCHHHHHHHH------------------------HHHTSC-HHHHHHHHHHHHHH
T ss_pred ------cc----------------CCCHHHHHHHH------------------------HHHhCc-HHHHHHHHHHHHHH
Confidence 00 00111112121 334321 12367777888888
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
.++|.+.|.++ ++++.|. .+..+.+.+.+ + ++...+.+.+.++||.++.|..|..
T Consensus 293 ~~~l~~~L~~~----------~~~~~~~----~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~g~~f~~------- 347 (376)
T 2dou_A 293 ALGMAEALKGV----------LSLLPPR----ATMYLWGRLPE--G--VDDLEFGLRLVERGVALAPGRGFGP------- 347 (376)
T ss_dssp HHHHHHHHTTT----------SEECCCC----BSSEEEEECCT--T--CCHHHHHHHHHHTTEECEEGGGGCG-------
T ss_pred HHHHHHHHHHh----------cCccCCC----eeEEEEEECCC--C--CCHHHHHHHHHHCCEEEcCchhhCC-------
Confidence 89998888653 3444432 23445566653 1 4555555544455999987754421
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+.+.||+|++. +.+||+++++.|+++++
T Consensus 348 ---------------------------~~~~~~Ris~~~--~~~~i~~~l~~l~~~l~ 376 (376)
T 2dou_A 348 ---------------------------GGKGFVRIALVR--PLEELLEAAKRIREALD 376 (376)
T ss_dssp ---------------------------GGTTEEEEECCS--CHHHHHHHHHHHHHTC-
T ss_pred ---------------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHhC
Confidence 023689999985 89999999999988764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=195.34 Aligned_cols=346 Identities=10% Similarity=0.073 Sum_probs=211.2
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccc-hhHHHHHHHHHHHHHcCCCCCCccE
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~-~~~~~~~~R~~ia~~l~a~~~ey~v 192 (632)
+++..+.++.+++++.+.+... | ..+++.+.+..+.. .....+.+|+.+++++|++++ .|
T Consensus 36 ~~~~n~~~~~v~~a~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~v 96 (420)
T 3gbx_A 36 IASENYTSPRVMQAQGSQLTNK--------Y---------AEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA--NV 96 (420)
T ss_dssp CTTCCCCCHHHHHHHTSGGGGC--------C---------C--------------CHHHHHHHHHHHHHHHTCSEE--EC
T ss_pred eccCCCCCHHHHHHHHHHHhcc--------c---------ccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc--ee
Confidence 4555567999999987654211 0 01233322211111 134566788999999999754 45
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCC
Q 006746 193 VFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 271 (632)
Q Consensus 193 vft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~ 271 (632)
++| ++|+|+.+++.++ +++||+|++. ..|++....+..-.....++.+..++.+ .++.+|+++|+++|++++
T Consensus 97 ~~~-sGs~a~~~a~~~~-~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~---- 169 (420)
T 3gbx_A 97 QPH-SGSQANFAVYTAL-LQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHK---- 169 (420)
T ss_dssp CCS-SHHHHHHHHHHHH-CCTTCEEEEEEEC------------CHHHHSEEEEEEEC-TTCSCCHHHHHHHHHHHC----
T ss_pred Eec-CcHHHHHHHHHHh-cCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC-ccCCcCHHHHHHHHHhcC----
Confidence 455 5589999998888 7899997654 4555422222211112234555566666 667799999999998642
Q ss_pred ceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEccccccCCCCCceEEE
Q 006746 272 QRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL 347 (632)
Q Consensus 272 ~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~---~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L 347 (632)
++++++.+.++ |...|++ |.++|+++|+++++|.+|..+. ...+..+. .+|++++|+||++|. |.| |++
T Consensus 170 -~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g-~~g-g~~ 242 (420)
T 3gbx_A 170 -PKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAG-PRG-GLI 242 (420)
T ss_dssp -CSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCS-CSC-EEE
T ss_pred -CeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCC-CCc-eEE
Confidence 47888866443 6789999 9999999999999999976532 00122222 489999999998843 777 888
Q ss_pred EEeCC---CccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchh
Q 006746 348 FVKKS---TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI 424 (632)
Q Consensus 348 ~Vr~~---~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i 424 (632)
+.++. ..+.+....+. ++ .|+++.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~-------------------------------------~~-------------~~~~~~~~~ 272 (420)
T 3gbx_A 243 LAKGGDEELYKKLNSAVFP-------------------------------------SA-------------QGGPLMHVI 272 (420)
T ss_dssp EESSCCHHHHHHHHHHHC------------------------------------------------------CCCCHHHH
T ss_pred EEcCCcHHHHHHhhhhcCC-------------------------------------CC-------------CCCcchhHH
Confidence 88773 32222211000 00 112222333
Q ss_pred hHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCC
Q 006746 425 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF 504 (632)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~ 504 (632)
.++. .++......+++.+.++.+.+.+++.+.|.++ | ++++.+.
T Consensus 273 ~a~~------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~--- 316 (420)
T 3gbx_A 273 AGKA------------------------VALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR------G---YKVVSGG--- 316 (420)
T ss_dssp HHHH------------------------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---
T ss_pred HHHH------------------------HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc------C---CeeccCC---
Confidence 3332 34433323356788899999999999999885 4 4454431
Q ss_pred CCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCcc-CChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCC
Q 006746 505 DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 583 (632)
Q Consensus 505 ~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~-c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
..+.++.+.+.+. .++...+.+++.++||.++.+.. .+.+ .....
T Consensus 317 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~~~~~~-------------------------------~~~~~ 362 (420)
T 3gbx_A 317 TENHLFLLDLVDK---NLTGKEADAALGRANITVNKNSVPNDPK-------------------------------SPFVT 362 (420)
T ss_dssp CSSSEEEEECGGG---TCCHHHHHHHHHHTTEECEEECCTTCSS-------------------------------CTTTC
T ss_pred CCCeEEEEEcCCC---CCCHHHHHHHHHHCCcEeccccCCCCcc-------------------------------ccCCC
Confidence 3466766666531 15677888888889999875210 0000 11223
Q ss_pred cEEEEccCCCCC----HHHHHHHHHHHHHhhhh
Q 006746 584 TVVTASLGYLAN----FEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 584 ~~VRvSlg~~~t----~eDV~rlv~~l~~~l~~ 612 (632)
..||+++...++ .+||+++++.|++.|+.
T Consensus 363 ~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 363 SGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred cceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 469999987754 89999999999998866
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-19 Score=187.30 Aligned_cols=323 Identities=10% Similarity=0.128 Sum_probs=213.0
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+.-|||+++. |..++.+++++.+.+...... .+ . + ..+..++.+++++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-----------------~~---~--~---~~~~~~~l~~~la 88 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT-----------------SR---A--F---HSDQLGPWYEKVA 88 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCC-----------------CT---T--S---EETTHHHHHHHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccc-----------------cc---c--c---CCHHHHHHHHHHH
Confidence 45779999763 335788888876544321000 00 0 0 1245678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC---------CCCCeEEE-eccccchhhHHHHHHHHh----c-----CCE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF---------MSVKNLLT-VYDYESEAVEAMIRTSEK----R-----GAR 241 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~---------~~gd~ilt-~~d~~s~~v~~~~~~a~~----~-----G~~ 241 (632)
+++|. + .++||+|+|+|+.+++..+.- ..+++|++ ...||+.....+ ..... . ...
T Consensus 89 ~~~g~--~--~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 163 (392)
T 3ruy_A 89 KLTNK--E--MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAV-SMSSNEEYKRGFGPMLPG 163 (392)
T ss_dssp HHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHH-HTCSCTTTTTTCCSCCSS
T ss_pred HhcCC--C--EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhh-hccCChhhccccCCCCCC
Confidence 99983 3 699999999999998876521 12557665 557776322221 11000 0 012
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc-CCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL-GPKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~g~~ 315 (632)
+..++. .|+++|+++|++ ++++|++.+.+|+||..+| ++ |.++|+++|+++++|.++. ++..
T Consensus 164 ~~~~~~------~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~ 231 (392)
T 3ruy_A 164 IIVIPY------GDLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT 231 (392)
T ss_dssp EEEECT------TCHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTT
T ss_pred CeeeCc------ccHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcc
Confidence 433333 278899988874 3599999999999999999 99 9999999999999999985 2221
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCC--CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENP--SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P--~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
...++.....+|++++| |.++ + ..+|+++++++.++.+.+...+++ |
T Consensus 232 g~~~~~~~~~~~~d~~~~S--K~l~--gG~~~~G~~~~~~~~~~~~~~~~~~~~----------~--------------- 282 (392)
T 3ruy_A 232 GKVFACDWDNVTPDMYILG--KALG--GGVFPISCAAANRDILGVFEPGSHGST----------F--------------- 282 (392)
T ss_dssp SSSSGGGGGTCCCSEEEEC--GGGG--TTTSCCEEEEECHHHHTTCCTTSSCCS----------S---------------
T ss_pred ccchhhhccCCCCCEEEEc--hhhh--CChhhhEEEEECHHHHhhhccCCcCCC----------C---------------
Confidence 11223333467998776 9766 3 248999998877665544221100 0
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGR 471 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~ 471 (632)
+.+.+...++. ++|+.+.. +.+.++.+
T Consensus 283 --------------------------~~~~~~~~a~~------------------------~~l~~~~~---~~~~~~~~ 309 (392)
T 3ruy_A 283 --------------------------GGNPLACAVSI------------------------AALEVLEE---EKLTERSL 309 (392)
T ss_dssp --------------------------TTCHHHHHHHH------------------------HHHHHHHH---TTHHHHHH
T ss_pred --------------------------CCCHHHHHHHH------------------------HHHHHHHh---hhHHHHHH
Confidence 00111122222 56666543 67788999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhH
Q 006746 472 CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 472 ~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~ 551 (632)
.+.+++.+.|.++ +.+.+.... ..+.++.+.+.+ +...+.+.+.++||.++.|
T Consensus 310 ~~~~~l~~~L~~~------~~~~~~~~~-----~~g~~~~~~~~~------~~~~l~~~l~~~gi~v~~~---------- 362 (392)
T 3ruy_A 310 QLGEKLVGQLKEI------DNPMITEVR-----GKGLFIGIELNE------PARPYCEQLKAAGLLCKET---------- 362 (392)
T ss_dssp HHHHHHHHHHTTC------CCTTEEEEE-----EETTEEEEEESS------CSHHHHHHHHTTTEECCCB----------
T ss_pred HHHHHHHHHHHHh------cCCCceEEE-----eeeeEEEEEEcc------hHHHHHHHHHHCCcEEecC----------
Confidence 9999999999988 335454432 257888888754 3345555555789988743
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
..+.||+|+++.+|.+|++++++.|++++
T Consensus 363 ------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 363 ------------------------------HENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp ------------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 23599999999999999999999999876
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-20 Score=197.20 Aligned_cols=304 Identities=10% Similarity=0.055 Sum_probs=202.2
Q ss_pred HHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|+++++ ++++ ..|+||+|+|+|+++++.++ .++||+|++ ...|++ + ...++..|++++.++
T Consensus 71 ~lr~~la~~~~~~~g~~~~~~-~~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~--~---~~~~~~~g~~~~~~~ 143 (422)
T 3fvs_A 71 PLTKILASFFGELLGQEIDPL-RNVLVTVGGYGALFTAFQAL-VDEGDEVIIIEPFFDC--Y---EPMTMMAGGRPVFVS 143 (422)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--H---HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCC-CcEEEECChHHHHHHHHHHH-cCCCCEEEEcCCCchh--h---HHHHHHcCCEEEEEe
Confidence 45555555554 4431 37999999999999999998 789999765 446654 2 334567899999999
Q ss_pred ccC-----------CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc---chH-HHHHHhhCCcEEEEecccc
Q 006746 247 FSW-----------PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY---PYL-WMRIAQENDWHILIDACAL 311 (632)
Q Consensus 247 ~~~-----------~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~---pl~-i~~~a~~~g~~vlvDaaq~ 311 (632)
.++ .+..+++++|+++++++ ++++++++.+|+||..+ +++ |+++|+++|+++++|.++.
T Consensus 144 ~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~ 217 (422)
T 3fvs_A 144 LKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ 217 (422)
T ss_dssp CBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cccccccccccccccCCCCCHHHHHhhcCCC------ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccch
Confidence 873 13358999998887643 58999999999999999 477 8899999999999999987
Q ss_pred C----CCCCCCCCCC----CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 312 G----PKDMDSFGLS----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 312 ~----g~~m~~ldls----~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
. +. ...++. .++.++++.|++|.||.+..++|+++++++.++.+......
T Consensus 218 ~~~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-------------------- 275 (422)
T 3fvs_A 218 WMVYDGH--QHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQN-------------------- 275 (422)
T ss_dssp TCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHT--------------------
T ss_pred hhccCCC--CCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhh--------------------
Confidence 5 32 122222 23456999999999983212378888777655433221000
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHH-----
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV----- 458 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~----- 458 (632)
. . .+.+.+...++. ++|+..
T Consensus 276 -----------------~--~------------~~~~~~~~~a~~------------------------~~l~~~~~~~~ 300 (422)
T 3fvs_A 276 -----------------S--V------------FHCPTQSQAAVA------------------------ESFEREQLLFR 300 (422)
T ss_dssp -----------------T--T------------CCCCHHHHHHHH------------------------HHHHHHHHTTT
T ss_pred -----------------c--c------------CCCCcHHHHHHH------------------------HHHhhcccccc
Confidence 0 0 001111122221 344321
Q ss_pred -HhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC----------CCccCHHHH
Q 006746 459 -DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK----------REKIEPVLV 527 (632)
Q Consensus 459 -~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~----------G~~i~~~~V 527 (632)
....++.+.++.+.+.++|.+.|.++ | ++++.|. .+..+.+.+.... .+....+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (422)
T 3fvs_A 301 QPSSYFVQFPQAMQRCRDHMIRSLQSV------G---LKPIIPQ----GSYFLITDISDFKRKMPDLPGAVDEPYDRRFV 367 (422)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHTT------T---CEEEBCS----BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHc------C---CeecCCC----eeeEEEEechhhcccccccccccccccHHHHH
Confidence 01236788899999999999999887 4 4555553 3445555543210 000023556
Q ss_pred HHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHH
Q 006746 528 QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 607 (632)
Q Consensus 528 ~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~ 607 (632)
.++++++||.+..|..|..... ...+.+.||+|++. +.+||+.+++.|+
T Consensus 368 ~~ll~~~gv~v~~g~~f~~~~~-----------------------------~~~~~~~iRis~~~--~~e~i~~~l~~l~ 416 (422)
T 3fvs_A 368 KWMIKNKGLVAIPVSIFYSVPH-----------------------------QKHFDHYIRFCFVK--DEATLQAMDEKLR 416 (422)
T ss_dssp HHHHHHHCEECEEGGGGSCHHH-----------------------------HTTSCSEEEEECCC--CHHHHHHHHHHHH
T ss_pred HHHHHhcCEEEeCcHHhcCCcC-----------------------------CCCCCCeEEEEecC--CHHHHHHHHHHHH
Confidence 6778888999998877654310 01245799999887 9999999999999
Q ss_pred Hhhh
Q 006746 608 QFLD 611 (632)
Q Consensus 608 ~~l~ 611 (632)
+++.
T Consensus 417 ~~l~ 420 (422)
T 3fvs_A 417 KWKV 420 (422)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8874
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-19 Score=190.99 Aligned_cols=294 Identities=15% Similarity=0.140 Sum_probs=193.6
Q ss_pred HHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 174 AMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+.|+.|++++ |++.+...|++|+|+|+|+.+++.++ +++||+|++ ...|+. ....++..|++++.++.+
T Consensus 72 ~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~-----~~~~~~~~g~~~~~v~~~ 145 (385)
T 1b5p_A 72 ELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI-LDPGDEVIVLSPYWVS-----YPEMVRFAGGVVVEVETL 145 (385)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH-----HHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHh-cCCCCEEEEcCCCchh-----HHHHHHHcCCEEEEeecC
Confidence 5677777766 43222237999999999999999998 789999765 456653 234567789999999987
Q ss_pred C-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCCC-CCCCCC
Q 006746 249 W-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKDM-DSFGLS 322 (632)
Q Consensus 249 ~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~m-~~ldls 322 (632)
. .+..+++++|+++++++ ++++++++.+|+||..+| ++ |+++|+++|+++++|.++.....- ....+.
T Consensus 146 ~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 219 (385)
T 1b5p_A 146 PEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPG 219 (385)
T ss_dssp GGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGG
T ss_pred cccCCCCCHHHHHHhcCCC------CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHH
Confidence 3 23468999998877643 589999999999999988 67 889999999999999986642100 011222
Q ss_pred CC--CCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhh
Q 006746 323 LV--RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 398 (632)
Q Consensus 323 ~~--~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 398 (632)
.+ +.++++.|++|.+| +.| +|+++++++.++.+.+...
T Consensus 220 ~~~~~~~i~~~s~SK~~~--~~G~RiG~~~~~~~~~~~l~~~~~------------------------------------ 261 (385)
T 1b5p_A 220 RVAPEHTLTVNGAAKAFA--MTGWRIGYACGPKEVIKAMASVSR------------------------------------ 261 (385)
T ss_dssp GTCTTTEEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHHH------------------------------------
T ss_pred HcCCCCEEEEEechhhcC--CcccceEEEEeCHHHHHHHHHHHh------------------------------------
Confidence 22 56899999999999 558 8999987765544332100
Q ss_pred hccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHH---HHhhCHHHHHHHHHHHHH
Q 006746 399 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ---VDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 399 e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~---~~~~Gl~~I~~r~~~L~~ 475 (632)
.++.. .+.+...++ .++|+. ..+ .++.+.++.+...+
T Consensus 262 -~~~~~--------------~~~~~~~a~------------------------~~~l~~~~~~~~-~~~~~~~~~~~~~~ 301 (385)
T 1b5p_A 262 -QSTTS--------------PDTIAQWAT------------------------LEALTNQEASRA-FVEMAREAYRRRRD 301 (385)
T ss_dssp -TTTCS--------------CCHHHHHHH------------------------HHHHHCHHHHHH-HHHHHHHHHHHHHH
T ss_pred -hccCC--------------CCHHHHHHH------------------------HHHHhCCCcchH-HHHHHHHHHHHHHH
Confidence 00000 000000111 134432 111 26677888888889
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
++.+.|.++ | ++++.|. -+..+-..+.. .| ++...+.+.+.++||.++.|..|.
T Consensus 302 ~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~-~~--~~~~~l~~~l~~~gv~v~~g~~f~---------- 355 (385)
T 1b5p_A 302 LLLEGLTAL------G---LKAVRPS----GAFYVLMDTSP-IA--PDEVRAAERLLEAGVAVVPGTDFA---------- 355 (385)
T ss_dssp HHHHHHHHH------T---CCBCCCS----BTTEEEEECTT-TC--SSHHHHHHHHHHTTEECEESGGGT----------
T ss_pred HHHHHHHHC------C---CeecCCC----eeEEEEEecCC-CC--CCHHHHHHHHHHCCeEEecccccC----------
Confidence 999999886 3 2334432 12233334431 12 455555554448899998774331
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|++ ++.+++++.++.|+++++
T Consensus 356 --------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 356 --------------------------AFGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp --------------------------CTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred --------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 1358999988 899999999988877654
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=195.90 Aligned_cols=310 Identities=13% Similarity=0.072 Sum_probs=202.7
Q ss_pred HHHHHHHHHHc----CCC-CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 173 SAMKKRIMDFL----NIS-ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~-~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+.|+.|++++ |.+ .+...|+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.++
T Consensus 88 ~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~-----~~~~~~~~g~~~~~v~ 161 (425)
T 1vp4_A 88 PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYLG-----AINAFRQYLANFVVVP 161 (425)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHh-CCCCCEEEEeCCCcHH-----HHHHHHHcCCEEEEec
Confidence 46788888888 843 22237999999999999999998 6789997654 45553 2344567899999999
Q ss_pred ccCCccccCHHHHHHHHHhcCc--CCCceeEE-EEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccCCCC--CC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGK--KKKQRGLF-VFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALGPKD--MD 317 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~--~~~~~~Lv-~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~g~~--m~ 317 (632)
.+. ++ +++++|+++|++... ...+++++ +++..+|+||..+|. + |+++|+++|+++++|.++....- -.
T Consensus 162 ~~~-~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 239 (425)
T 1vp4_A 162 LED-DG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET 239 (425)
T ss_dssp EET-TE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC
T ss_pred cCC-CC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC
Confidence 873 44 899999999975100 00135787 689999999999985 4 77889999999999999876210 01
Q ss_pred CCCC---CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchh
Q 006746 318 SFGL---SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 394 (632)
Q Consensus 318 ~ldl---s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 394 (632)
...+ ...+.++++.|++|+|| +...+|++++++++++.+..... .+
T Consensus 240 ~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~------------~~------------------ 288 (425)
T 1vp4_A 240 VDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQ------------SA------------------ 288 (425)
T ss_dssp CCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHH------------HH------------------
T ss_pred CcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCHHHHHHHHHHhh------------hh------------------
Confidence 1222 22356899999999999 31236999988766544322100 00
Q ss_pred hhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHH-HhhCHHHHHHHHHHH
Q 006746 395 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV-DSLGLTMISRRGRCL 473 (632)
Q Consensus 395 ~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~-~~~Gl~~I~~r~~~L 473 (632)
..+ .+.+...++. ++|+.. ....++.+.++.+..
T Consensus 289 -----~~~----------------~~~~~~~a~~------------------------~~l~~~~~~~~~~~~~~~~~~~ 323 (425)
T 1vp4_A 289 -----DLC----------------SPAITHRLAA------------------------RYLERYDLLEQLKPTIELYRRK 323 (425)
T ss_dssp -----HSS----------------CCHHHHHHHH------------------------HHHHHSCHHHHTHHHHHHHHHH
T ss_pred -----cCC----------------CCHHHHHHHH------------------------HHHhcCCHHHHHHHHHHHHHHH
Confidence 000 0111111111 344331 011356777888888
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHH-HHHHHHHhCCcEEccCccCChHHHhHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~-~V~kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
.+++.+.|.++.. +.|.++++.|. .+..+.+.+.+ + ++.. +.++|+++ ||.++.|..|...
T Consensus 324 ~~~l~~~L~~~~~----~~~g~~~~~~~----~g~~~~~~~~~--~--~~~~~l~~~l~~~-gi~v~~g~~f~~~----- 385 (425)
T 1vp4_A 324 RTVMLNALEEYFS----DIPGVKWVKSE----GGLFIWLTLPE--G--FDTWEMFEYAKRK-KVFYVPGRVFKVY----- 385 (425)
T ss_dssp HHHHHHHHHHHST----TSTTCEECCCS----BSSEEEEECCT--T--CCTTTTHHHHHHH-TEECEEGGGGCTT-----
T ss_pred HHHHHHHHHHhCC----CCCceEEecCC----ccEEEEEEcCC--C--CCHHHHHHHHHHC-CCEEECchhhcCC-----
Confidence 9999999987510 01146776552 35677777753 1 2333 44555555 9999877433220
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+.||+|++.. +.+||+++++.|++++..
T Consensus 386 ---------------------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 386 ---------------------------DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp ---------------------------CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 11346999999986 999999999999998865
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-19 Score=187.05 Aligned_cols=293 Identities=15% Similarity=0.081 Sum_probs=201.7
Q ss_pred HHHHHHHHHHc-CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 173 SAMKKRIMDFL-NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 173 ~~~R~~ia~~l-~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
.+.|+.+++++ +++++ .|++|+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.++++++
T Consensus 66 ~~l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~ 137 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPE--QILQTNGATGANLLVLYSL-IEPGDHVISLYPTYQQ-----LYDIPKSLGAEVDLWQIEEE 137 (375)
T ss_dssp HHHHHHHHTTSSSCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESSCTH-----HHHHHHHTTCEEEEEEEEGG
T ss_pred HHHHHHHHHHhccCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCchh-----HHHHHHHcCCEEEEEecccc
Confidence 47899999998 46654 7999999999999999998 7899997754 45553 23446778999999998743
Q ss_pred -ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCCCCCC--CCCC
Q 006746 251 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKDMDSF--GLSL 323 (632)
Q Consensus 251 -~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~m~~l--dls~ 323 (632)
+..+|+++|+++++++ +++++++..+|+||..+| ++ |+++|+++|+++++|.++..... .++ -.+.
T Consensus 138 ~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~-~~~~~~~~~ 210 (375)
T 3op7_A 138 NGWLPDLEKLRQLIRPT------TKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE-LDVPSIIEV 210 (375)
T ss_dssp GTTEECHHHHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS-SCCCCHHHH
T ss_pred CCCCCCHHHHHHhhccC------CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc-cCCCchhhh
Confidence 3347999999998754 488999999999999999 88 99999999999999999765321 111 0123
Q ss_pred CCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 324 VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
++.++++.|++|.+|. .| +|++++++++++.+..... .+
T Consensus 211 ~~~~i~~~s~sK~~~~--~G~r~G~v~~~~~l~~~~~~~~~------------~~------------------------- 251 (375)
T 3op7_A 211 YDKGIAVNSLSKTYSL--PGIRIGWVAANHQVTDILRDYRD------------YT------------------------- 251 (375)
T ss_dssp CTTEEEEEESSSSSSC--GGGCCEEEECCHHHHHHHTTTGG------------GT-------------------------
T ss_pred cCCEEEEeEChhhcCC--cccceEEEEeCHHHHHHHHHHHh------------hh-------------------------
Confidence 4567999999999983 35 5998887766555433110 00
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
+ +. .+.+..... ..+|+..+. .+++..++.+...+++.+.|
T Consensus 252 ~--~~------------~~~~~~~~~------------------------~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l 292 (375)
T 3op7_A 252 M--IC------------AGVFDDLVA------------------------QLALAHYQE-ILERNRHILEENLAILDQWI 292 (375)
T ss_dssp T--SC------------CCHHHHHHH------------------------HHHHHTHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred c--cC------------CCcHHHHHH------------------------HHHHhccHH-HHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000001111 144554333 25677777788888899888
Q ss_pred HccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHH-HHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVL-VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~-V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
.++ |.++++.|. .+..+.+.+... .+... +++++.++||.++.|..+.
T Consensus 293 ~~~--------~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~~g~~~~--------------- 341 (375)
T 3op7_A 293 EEE--------PLVSYIRPA----VVSTSFVKIAVD----MPMEDFCLQLLQEHGVLLVPGNRFE--------------- 341 (375)
T ss_dssp HHC--------TTEEECCCS----SSSCEEEEECCS----SCHHHHHHHHHHHHCEECEEGGGGT---------------
T ss_pred hhC--------CCceEecCC----CeEEEeEEcCCC----CCHHHHHHHHHHhCCEEEeChhhhC---------------
Confidence 875 567776553 233333344321 34444 4566688899998663211
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|++.. .+||+++++.|+++++.
T Consensus 342 ---------------------~~~~iRi~~~~~--~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 342 ---------------------RDGYVRLGFACE--QETLIKGLEKLSQFLRR 370 (375)
T ss_dssp ---------------------CTTEEEECCCSC--HHHHHHHHHHHHHHHGG
T ss_pred ---------------------CCCeEEEEecCC--HHHHHHHHHHHHHHHHH
Confidence 136899998754 49999999999998864
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=193.28 Aligned_cols=351 Identities=10% Similarity=0.057 Sum_probs=213.7
Q ss_pred ecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch-hHHHHHHHHHHHHHcCCCCCCcc
Q 006746 113 DYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESAMKKRIMDFLNISENDYG 191 (632)
Q Consensus 113 D~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~-~~~~~~~R~~ia~~l~a~~~ey~ 191 (632)
..++..++++.+++++.+.+... | ..+++...+..+... ....+.+|+.+++++|+++ .
T Consensus 37 l~~~~~~~~~~v~~a~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~ 96 (425)
T 3ecd_A 37 LIASENIVSRAVLDAQGSVLTNK--------Y---------AEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH---A 96 (425)
T ss_dssp CCTTCCCCCHHHHHHHTSGGGSS--------C---------TTC------------CCHHHHHHHHHHHHHHTCSE---E
T ss_pred eecccCCCCHHHHHHHhhhhhcc--------c---------ccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCC---c
Confidence 34566677999999987654211 0 012232222111111 2445567799999999874 3
Q ss_pred EEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCC
Q 006746 192 MVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK 270 (632)
Q Consensus 192 vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~ 270 (632)
.++++|+|+|+.+++.++ +++||+|++. ..|++....+........++++..++.+...+.+|+++|++++.+.
T Consensus 97 ~v~~~~Gs~a~~~al~~~-~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~---- 171 (425)
T 3ecd_A 97 NVQPHSGAQANGAVMLAL-AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH---- 171 (425)
T ss_dssp ECCCSSHHHHHHHHHHHH-CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHH----
T ss_pred eeecCchHHHHHHHHHHc-cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhc----
Confidence 467899999999999988 7899997654 5665422222111112223355566665445678999999999742
Q ss_pred CceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC--CCCCCCCCCCcEEEEccccccCCCCCceEEE
Q 006746 271 KQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM--DSFGLSLVRPDFLICSFYQIFGENPSGFGCL 347 (632)
Q Consensus 271 ~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m--~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L 347 (632)
+++++++.+..| |...+++ |.++|+++|+++++|.+|+.+.-. ..... .-.+|++++|+||+++. |.| |++
T Consensus 172 -~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~-~~~~di~~~s~sK~l~g-~~~-g~~ 245 (425)
T 3ecd_A 172 -KPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP-VEHAHVVTSTTHKTLRG-PRG-GFV 245 (425)
T ss_dssp -CCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG-GGTCSEEEEESSGGGCC-CSC-EEE
T ss_pred -CCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCc-hhcCcEEEecCCcccCC-CCc-EEE
Confidence 247888875444 8899999 999999999999999997553200 01111 11379999999997754 754 888
Q ss_pred EEeCC-CccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhH
Q 006746 348 FVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 426 (632)
Q Consensus 348 ~Vr~~-~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~ 426 (632)
+.+++ ..+.+.+..+. ++ .|+++.+.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~-------------------------------------~~-------------~~~~~~~~~~a 275 (425)
T 3ecd_A 246 LTNDEEIAKKINSAVFP-------------------------------------GL-------------QGGPLMHVIAG 275 (425)
T ss_dssp EESCHHHHHHHHHHHC-------------------------------------------------------CCCHHHHHH
T ss_pred EeCCHHHHHHHHhhhCc-------------------------------------cc-------------cCCccHHHHHH
Confidence 87753 32222221100 00 11122223333
Q ss_pred hhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCC
Q 006746 427 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 506 (632)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~r 506 (632)
+. .++......+++.+.++.+.+.++|.+.|.++ | ++++.|. ..
T Consensus 276 ~~------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~ 319 (425)
T 3ecd_A 276 KA------------------------VAFGEALTDDFKTYIDRVLANAQALGDVLKAG------G---VDLVTGG---TD 319 (425)
T ss_dssp HH------------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---CS
T ss_pred HH------------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC------C---CeeccCC---CC
Confidence 32 44444333457788999999999999999886 4 4555432 34
Q ss_pred CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEE
Q 006746 507 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV 586 (632)
Q Consensus 507 g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V 586 (632)
+.++.+.+.+. .++...+.+++.++||.++.+.. ++... .....+.|
T Consensus 320 ~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~--p~~~~----------------------------~~~~~~~i 366 (425)
T 3ecd_A 320 NHLLLVDLRPK---GLKGAQVEQALERAGITCNKNGI--PFDPE----------------------------KPTITSGI 366 (425)
T ss_dssp SSEEEEECGGG---TCCHHHHHHHHHHTTEECEECCC--TTCSS----------------------------CTTTCSEE
T ss_pred ceEEEEEeCCC---CCCHHHHHHHHHHcCCEeccccc--CCCCC----------------------------CCCCccce
Confidence 66777776542 15678888888889999986531 11000 11234589
Q ss_pred EEccCCCCC----HHHHHHHHHHHHHhhhhc
Q 006746 587 TASLGYLAN----FEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 587 RvSlg~~~t----~eDV~rlv~~l~~~l~~~ 613 (632)
|++++.+++ .+||+++++.|++.++..
T Consensus 367 Ri~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 367 RLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 999877776 999999999999988764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=188.97 Aligned_cols=209 Identities=9% Similarity=0.017 Sum_probs=142.7
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
..++||+....+.++.+++++...... ...|+. .....+.|+++++++|++
T Consensus 4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~--------------------------~~~y~~--~~~~~~l~~~la~~~g~~- 54 (347)
T 1jg8_A 4 MMIDLRSDTVTKPTEEMRKAMAQAEVG--------------------------DDVYGE--DPTINELERLAAETFGKE- 54 (347)
T ss_dssp -CEECSCGGGCCCCHHHHHHHHTCCCC--------------------------CGGGTC--CHHHHHHHHHHHHHHTCS-
T ss_pred eEEEeccccCCCCCHHHHHHHhcCCCC--------------------------CcccCC--ChHHHHHHHHHHHHhCCc-
Confidence 468999999988888888887542210 001221 134568999999999985
Q ss_pred CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhc
Q 006746 188 NDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
.+++|+|+|+|+.+++.++ .++||+|++.. .|.+ .... ...++..|++++.+ .+ +++.+|+++|+++|++.
T Consensus 55 ---~~~~~~~gt~a~~~~~~~~-~~~gd~Vl~~~~~~~~-~~~~-~~~~~~~g~~~~~v-~~-~~~~~d~~~l~~~i~~~ 126 (347)
T 1jg8_A 55 ---AALFVPSGTMGNQVSIMAH-TQRGDEVILEADSHIF-WYEV-GAMAVLSGVMPHPV-PG-KNGAMDPDDVRKAIRPR 126 (347)
T ss_dssp ---EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCHHH-HSST-THHHHHTCCEEEEE-CE-ETTEECHHHHHHHSCCS
T ss_pred ---eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCcchhh-hccc-cchhhccCeEEEEe-cC-CCCccCHHHHHHHhccc
Confidence 4788999999999888887 68999987654 4433 2221 12345679999888 44 45668999999988642
Q ss_pred CcCCCceeEEEEeccCCCC-ccccch---H-HHHHHhhCCcEEEEeccccCCC-CCCCCCCCC--CCCcEEEEccccccC
Q 006746 267 GKKKKQRGLFVFPLHSRMT-GARYPY---L-WMRIAQENDWHILIDACALGPK-DMDSFGLSL--VRPDFLICSFYQIFG 338 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~T-G~~~pl---~-i~~~a~~~g~~vlvDaaq~~g~-~m~~ldls~--~~~Df~~~S~hK~~G 338 (632)
....++++++.+++.+|+| |..+|. + |+++|+++|+++++|+++..+. .....++.. ..+|.+++|+||++|
T Consensus 127 ~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~ 206 (347)
T 1jg8_A 127 NIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLC 206 (347)
T ss_dssp CTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTC
T ss_pred cccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccC
Confidence 1001247999999999999 999886 4 7789999999999999874310 000111111 357999999999888
Q ss_pred CCCCceEEEEEeCCCcc
Q 006746 339 ENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 339 ~~P~G~G~L~Vr~~~~~ 355 (632)
. |.| |+++.+++.++
T Consensus 207 ~-~~G-~~~~~~~~~~~ 221 (347)
T 1jg8_A 207 A-PVG-SVVVGDRDFIE 221 (347)
T ss_dssp C-SSC-EEEEECHHHHH
T ss_pred C-Cce-EEEEcCHHHHH
Confidence 5 543 24454554443
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=195.56 Aligned_cols=306 Identities=14% Similarity=0.111 Sum_probs=199.5
Q ss_pred HHHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEE
Q 006746 173 SAMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 173 ~~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
.+.|+.++++++ ++++ .|++|+|+|+++.+++.++ .++||+|++. ..|++ .. ..+++..|++++
T Consensus 86 ~~lr~~la~~~~~~~g~~~~~~~~--~i~~~~G~~~ai~~~~~~~-~~~gd~Vl~~~p~y~~-~~---~~~~~~~g~~~~ 158 (428)
T 1iay_A 86 PEFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPA-FN---RDLRWRTGVQLI 158 (428)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTT-HH---HHTTTTTCCEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCChh--hEEEccChHHHHHHHHHHh-CCCCCeEEEccCCCcc-hH---HHHHHhcCCEEE
Confidence 478888888887 6555 7999999999999999998 5789997755 45554 22 123345799999
Q ss_pred EEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCC-C-C
Q 006746 244 SAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPK-D-M 316 (632)
Q Consensus 244 ~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~-~-m 316 (632)
.++.+.. ...+++++|++++++......++++++++..+|+||..+| ++ |+++|+++|+++++|.++.... . -
T Consensus 159 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 238 (428)
T 1iay_A 159 PIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238 (428)
T ss_dssp EECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred EeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC
Confidence 9988632 2357999999998752111224789999999999999999 88 8999999999999999987521 0 0
Q ss_pred CCCCCC---------CCCCc--EEEEccccccCCCCCce--EEEEEe-CCCccccCCCCCCCceeecccccccccccccC
Q 006746 317 DSFGLS---------LVRPD--FLICSFYQIFGENPSGF--GCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 317 ~~ldls---------~~~~D--f~~~S~hK~~G~~P~G~--G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
...++. .+++| +++.|++|.||. .|+ |++++. ++.++.+.... .+|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~--~Glr~G~~~~~~~~~~~~~~~~~------------~~~~----- 299 (428)
T 1iay_A 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGL--PGFRVGIIYSFNDDVVNCARKMS------------SFGL----- 299 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSC--GGGCEEEEEESCHHHHHHHHHHH------------TTSC-----
T ss_pred CccCHHHhccccccccCCCCcEEEEecchhhcCC--CCceEEEEEeCCHHHHHHHHHHH------------hccc-----
Confidence 011111 12378 899999999994 474 999984 44443332100 0000
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHH--h
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD--S 460 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~--~ 460 (632)
.+.+...++. .+|+... +
T Consensus 300 ------------------------------------~~~~~~~a~~------------------------~~l~~~~~~~ 319 (428)
T 1iay_A 300 ------------------------------------VSTQTQYFLA------------------------AMLSDEKFVD 319 (428)
T ss_dssp ------------------------------------CCHHHHHHHH------------------------HHTTCHHHHH
T ss_pred ------------------------------------CCHHHHHHHH------------------------HHhcChHHHH
Confidence 0000111111 2232211 1
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC--ccCH-HHHHHHHHhCCcE
Q 006746 461 LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE--KIEP-VLVQKLADRENIS 537 (632)
Q Consensus 461 ~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~--~i~~-~~V~kla~~~gI~ 537 (632)
..++.+.++++...++|.+.|.++ |. +++.+ ..+..+.+.+.+.... .... .+.++|++++||.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~------g~---~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~ 386 (428)
T 1iay_A 320 NFLRESAMRLGKRHKHFTNGLEVV------GI---KCLKN----NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLN 386 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT------TC---CBCCC----SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------CC---cccCC----CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEE
Confidence 135677888889999999999887 32 33333 2355666766542100 0122 3445566667999
Q ss_pred EccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 538 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 538 lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
++.|..|.. .+.++||+|++ ..+.+|++++++.|+++++.
T Consensus 387 v~~~~~~~~----------------------------------~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 387 VSPGSSFEC----------------------------------QEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp CEEGGGGTC----------------------------------SSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred EeCchhhCC----------------------------------CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 987632221 12468999999 68999999999999998754
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-19 Score=190.76 Aligned_cols=299 Identities=13% Similarity=0.108 Sum_probs=203.5
Q ss_pred HHHHHHHHHHc-----CCCCCCcc---EEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHh-cCCEE
Q 006746 173 SAMKKRIMDFL-----NISENDYG---MVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEK-RGARV 242 (632)
Q Consensus 173 ~~~R~~ia~~l-----~a~~~ey~---vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~-~G~~v 242 (632)
.+.|+.|++++ +++++ . |+||+|+|+|+.+++.++ .++||+|++. ..|++ ....++. .|+++
T Consensus 91 ~~lr~~ia~~~~~~~~~~~~~--~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~y~~-----~~~~~~~~~g~~~ 162 (430)
T 2x5f_A 91 EELRDLWQQKMLRDNPELSID--NMSRPIVTNALTHGLSLVGDLF-VNQDDTILLPEHNWGN-----YKLVFNTRNGANL 162 (430)
T ss_dssp HHHHHHHHHHHHHHCTTCCGG--GBCCCEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTH-----HHHHHTTTTCCEE
T ss_pred HHHHHHHHHHHhccCcccCCC--ccceEEEcCCchHHHHHHHHHH-hCCCCEEEEcCCcCcc-----HHHHHHHhcCCeE
Confidence 47899999999 88765 6 999999999999999998 6889997755 45553 2345566 89999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhh-----CCcEEEEeccccCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQE-----NDWHILIDACALGP 313 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~-----~g~~vlvDaaq~~g 313 (632)
+.++.+..++.+++++|++++++.. ++++++++++.+|+||..+| ++ |+++|++ +|+++++|.++...
T Consensus 163 ~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~ 239 (430)
T 2x5f_A 163 QTYPIFDKDGHYTTDSLVEALQSYN---KDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGL 239 (430)
T ss_dssp EEECCBCTTSCBCSHHHHHHHHHCC---SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTC
T ss_pred EEEeccCccCCcCHHHHHHHHHhcC---CCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccc
Confidence 9999874345689999999998621 24689999999999999999 77 8899999 99999999987642
Q ss_pred CC----CCCC--CCCC-CCC---cEEEEccccccCCCCCc--eEEEEE---eCCCccccCCCCCCCceeecccccccccc
Q 006746 314 KD----MDSF--GLSL-VRP---DFLICSFYQIFGENPSG--FGCLFV---KKSTVPILVDNTSSGMVSLLPAKKQLWLT 378 (632)
Q Consensus 314 ~~----m~~l--dls~-~~~---Df~~~S~hK~~G~~P~G--~G~L~V---r~~~~~~L~~~~~gG~v~~~~~~~~~~~~ 378 (632)
.. ..++ ++.. .+. ++++.|++|.|| +.| +|++++ +++.++.+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~riG~~~~~~~~~~~~~~l~~~~~---------------- 301 (430)
T 2x5f_A 240 FYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF--AWGFRVGFMTFGTSDQTTKEVLEAKVK---------------- 301 (430)
T ss_dssp BCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTT--CGGGCCEEEEEBCCCHHHHHHHHHHHH----------------
T ss_pred cCCcccchHHHHHHhhccCCcceEEEEEecccCCC--CCCCCeEEEEEecCCHHHHHHHHHHHh----------------
Confidence 10 0121 2322 344 688999999998 447 699999 6665543322100
Q ss_pred cccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH--
Q 006746 379 DEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD-- 456 (632)
Q Consensus 379 ~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd-- 456 (632)
... ...+ .+.+.+...++. ++|+
T Consensus 302 ---------------~~~--~~~~--------------~~~~~~~~~a~~------------------------~~l~~~ 326 (430)
T 2x5f_A 302 ---------------GLI--RSNI--------------SSGPLPTQSAVK------------------------HVLKNN 326 (430)
T ss_dssp ---------------HHH--HTTT--------------SSCCHHHHHHHH------------------------HHHHSC
T ss_pred ---------------hhh--hccc--------------CCCChHHHHHHH------------------------HHHccC
Confidence 000 0000 011122222222 4554
Q ss_pred --HHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHH-HHHHh
Q 006746 457 --QVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQ-KLADR 533 (632)
Q Consensus 457 --~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~-kla~~ 533 (632)
+.+ .++++.++.+.+.++|.+.|.+.... ..++++.|. .+-.+.+.+.+ ++...+. +|+++
T Consensus 327 ~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~-----~g~~~~~~~----~g~~~~~~~~~-----~~~~~~~~~l~~~ 390 (430)
T 2x5f_A 327 KQFDK--EIEQNIQTLKERYEVTKEVVYADQYH-----SHWQAYDFN----SGYFMAIKVHD-----VDPEALRKHLIDK 390 (430)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHTCGGGT-----TTEEECCCC----BSSEEEEEESS-----SCHHHHHHHHHHH
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCC-----CCceeeCCC----ceEEEEeCCCC-----CCHHHHHHHHHHh
Confidence 222 24668888889999999999743100 126665542 23346677753 4555554 45554
Q ss_pred CCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 534 ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 534 ~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+||.++.| ..+.||+|+++ ++.+||+++++.|+++++.
T Consensus 391 ~gi~v~~g----------------------------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 391 YSIGVIAL----------------------------------------NATDIRIAFSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp HCEECEEC----------------------------------------SSSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred CCEEEecC----------------------------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 89998754 12589999996 5999999999999988753
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=189.01 Aligned_cols=345 Identities=9% Similarity=0.034 Sum_probs=220.3
Q ss_pred CCceEeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~g------l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|||+++.. +.++.+++++.+.+.... .++.+. | ......+.+++++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~-------------------~~~~~~--~---~~~~~~~l~~~la 96 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS-------------------HVMFGG--I---THAPAIELCRKLV 96 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCS-------------------CCCCSS--E---ECHHHHHHHHHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcc-------------------cccccc--c---CCHHHHHHHHHHH
Confidence 467899986543 357888888765442110 000000 1 1234567888999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-C----CCCeEEEec-cccchhhHHHHHHHH-----hc-----CCEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-M----SVKNLLTVY-DYESEAVEAMIRTSE-----KR-----GARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-~----~gd~ilt~~-d~~s~~v~~~~~~a~-----~~-----G~~v~ 243 (632)
++++++++ .|+||+|+|+|+++++..+. + + +|++|++.. .||.....++. ... +. ...+.
T Consensus 97 ~~~~~~~~--~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 173 (429)
T 1s0a_A 97 AMTPQPLE--CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMS-VCDPDNSMHSLWKGYLPENL 173 (429)
T ss_dssp HHSCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHT-TSCTTTTTGGGGTTTSCCCE
T ss_pred HhCCCCCC--EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhh-hcCCchhhcccccCCCCCce
Confidence 99998765 79999999999999987642 1 1 488877544 56653232221 100 01 11355
Q ss_pred EEeccC-----CccccCHHHHHHHHHhcCcCCCceeEEEEecc-CCCCccccc----hH-HHHHHhhCCcEEEEecccc-
Q 006746 244 SAEFSW-----PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYP----YL-WMRIAQENDWHILIDACAL- 311 (632)
Q Consensus 244 ~v~~~~-----~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~-sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~- 311 (632)
.++++. ..+.+|+++|+++|++.. .++++|++..+ +|.||.+.| ++ |.++|+++|+++++|.+|.
T Consensus 174 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 250 (429)
T 1s0a_A 174 FAPAPQSRMDGEWDERDMVGFARLMAAHR---HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG 250 (429)
T ss_dssp EECCCCSBC-CCCCGGGGHHHHHHHHHHT---TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred EeCCCcccccccchHHHHHHHHHHHHhCC---CCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhC
Confidence 566531 113478999999997421 24688999888 999999988 99 9999999999999999987
Q ss_pred CCCC--CCCCCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 312 GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 312 ~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
++.. +..++.....+|++++| |.+|. + .++|+++++++.++.+.....+ . +.
T Consensus 251 ~g~~g~~~~~~~~~~~~d~~t~s--K~l~~-G~~~iG~~~~~~~~~~~l~~~~~~-~---------~~------------ 305 (429)
T 1s0a_A 251 FGRTGKLFACEHAEIAPDILCLG--KALTG-GTMTLSATLTTREVAETISNGEAG-C---------FM------------ 305 (429)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEEC--GGGGT-SSSCCEEEEECHHHHHHHHTSTTS-S---------CS------------
T ss_pred CcccchHHHhhhcCCCCCEEEec--ccccC-CCccceEEEeCHHHHHHhhcCCCc-c---------cc------------
Confidence 4321 11233223468988766 97773 5 6799999998776555331000 0 00
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
..+| + +.|.+.+.+.. ++|+.+.+ +.+.+
T Consensus 306 ----------~~~t--~------------~~n~~~~~a~~------------------------aal~~~~~---~~~~~ 334 (429)
T 1s0a_A 306 ----------HGPT--F------------MGNPLACAAAN------------------------ASLAILES---GDWQQ 334 (429)
T ss_dssp ----------CCCT--T------------TTCHHHHHHHH------------------------HHHHHHHT---CHHHH
T ss_pred ----------cCCC--C------------CCCHHHHHHHH------------------------HHHHHHHh---CCHHH
Confidence 0011 0 01222233332 67777655 25678
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHH
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 548 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~ 548 (632)
|++.+.++|++.|.++.. .|.+..+. ..+.++.+.+.+. ++...+.+.+.++||.++.+
T Consensus 335 ~~~~~~~~l~~~L~~l~~-----~~~~~~~~-----~~g~~~~~~~~~~----~~~~~l~~~l~~~Gi~v~~~------- 393 (429)
T 1s0a_A 335 QVADIEVQLREQLAPARD-----AEMVADVR-----VLGAIGVVETTHP----VNMAALQKFFVEQGVWIRPF------- 393 (429)
T ss_dssp HHHHHHHHHHHHHGGGGG-----CTTEEEEE-----EETTEEEEEESSC----BCHHHHHHHHHHTTEECCCB-------
T ss_pred HHHHHHHHHHHHHHHHhc-----CCCEEEEE-----EeeEEEEEEECCc----ccHHHHHHHHHHCCCEEecc-------
Confidence 899999999999988721 24454221 1366777777541 45666665555789887521
Q ss_pred HhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 549 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 549 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.||+|+++.+|.+||+++++.|+++++.
T Consensus 394 ----------------------------------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 394 ----------------------------------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ----------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred ----------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 158999999999999999999999998753
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=191.23 Aligned_cols=302 Identities=13% Similarity=0.132 Sum_probs=202.8
Q ss_pred HHHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 173 SAMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.|+.|++++ |++ +...|++|+|+|+|+.+++.++ .++||+|++. ..|++ ....++..|++++.++.
T Consensus 121 ~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l-~~~Gd~Vlv~~p~y~~-----~~~~~~~~g~~~~~v~~ 193 (448)
T 3aow_A 121 TPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVF-LNPGDIVVVEAPTYLA-----ALQAFNFYEPQYIQIPL 193 (448)
T ss_dssp HHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHH-cCCCCEEEEeCCChHH-----HHHHHHHcCCEEEEecc
Confidence 46788888888 984 3337999999999999999998 6889997754 45553 23445678999999998
Q ss_pred cCCccccCHHHHHHHHH----hcCcCCCceeEE-EEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccCCC----
Q 006746 248 SWPRLRINSEKLRKMVV----SKGKKKKQRGLF-VFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALGPK---- 314 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~----~~~~~~~~~~Lv-~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~g~---- 314 (632)
+ +++ +++++|+++|+ +. ++++++ +++..+|+||..+|. + |+++|+++|+++++|.++....
T Consensus 194 ~-~~g-~d~~~L~~~l~~~~~~~----~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~ 267 (448)
T 3aow_A 194 D-DEG-MKVEILEEKLKELKSQG----KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN 267 (448)
T ss_dssp E-TTE-ECHHHHHHHHHHHHHTT----CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC
T ss_pred C-CCC-CCHHHHHHHHhhhhccC----CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC
Confidence 7 344 89999999997 31 135776 679999999999985 4 7889999999999999876531
Q ss_pred CCCCC-CCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 315 DMDSF-GLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 315 ~m~~l-dls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
...++ .+...+.++++.|+.|++| | | +|++++++++++.+..... .+
T Consensus 268 ~~~~~~~~~~~~~vi~~~S~SK~~~--~-GlriG~v~~~~~l~~~l~~~~~------------~~--------------- 317 (448)
T 3aow_A 268 PEKKIKALDNEGRVIYLGTFSKILA--P-GFRIGWMVGDPGIIRKMEIAKQ------------ST--------------- 317 (448)
T ss_dssp CCCCTGGGCTTSCEEEEEESTTTTC--G-GGCCEEEEECHHHHHHHHHHHH------------HH---------------
T ss_pred CCcCHHhcCCCCCEEEEccchhhcc--c-cccEEEEEeCHHHHHHHHHHHH------------Hh---------------
Confidence 00111 2223456899999999999 4 6 7999998776554432100 00
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHH-hhCHHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD-SLGLTMISRRG 470 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~-~~Gl~~I~~r~ 470 (632)
..++ +.+...++. ++|+... ...++.+.++.
T Consensus 318 -------~~~~-----------------~~~~q~a~~------------------------~~L~~~~~~~~~~~~~~~~ 349 (448)
T 3aow_A 318 -------DLCT-----------------NVFGQVVAW------------------------RYVDGGYLEKHIPEIRKFY 349 (448)
T ss_dssp -------HSSC-----------------CHHHHHHHH------------------------HHHHTTHHHHHHHHHHHHH
T ss_pred -------cCCC-----------------CHHHHHHHH------------------------HHHHhCCHHHHHHHHHHHH
Confidence 0000 000011111 2332210 01256677778
Q ss_pred HHHHHHHHHHHHccCCCCCCCCC-cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHH
Q 006746 471 RCLINWLVNALMKLQHPNTEGNA-LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p-~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~ 549 (632)
+...++|.+.|.+. .| .++++.|. .|..+.+.+.+ + ++...+.+.+.++||.++.|..|...
T Consensus 350 ~~~~~~l~~~L~~~-------~~~g~~~~~p~----~g~~~~v~~~~--~--~~~~~l~~~l~~~gV~v~pg~~f~~~-- 412 (448)
T 3aow_A 350 KPRRDAMLEALEEF-------MPEGVKWTKPE----GGMFIWVTLPD--G--IDSKKMLERAIKKGVAYVPGEAFYAH-- 412 (448)
T ss_dssp HHHHHHHHHHHHHH-------CCTTCEECCCS----BSSEEEEECST--T--CCHHHHHHHHHHTTEECEEGGGGSTT--
T ss_pred HHHHHHHHHHHHHh-------CCCCeEEeCCC----ccEEEEEEcCC--C--CCHHHHHHHHHHCCcEEEcchhhcCC--
Confidence 88889999999874 24 46665552 35566666653 1 45555554444559999877543320
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
....+.||+|++.. +.|||+.+++.|+++++..
T Consensus 413 ------------------------------~~~~~~iRls~~~~-~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 413 ------------------------------RDVKNTMRLNFTYV-DEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp ------------------------------CCCCSEEEEECSSS-CTHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCCCEEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 11346899999974 8999999999999988654
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-19 Score=191.31 Aligned_cols=325 Identities=12% Similarity=0.038 Sum_probs=199.5
Q ss_pred HHHHHHHHHH-HHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 170 GLESAMKKRI-MDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 170 ~~~~~~R~~i-a~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
...++.|+++ ++++|.. + .+++|+|+|+|+.+++.++.+++||+|++ ...|++ + ...++..|++++.+++
T Consensus 36 ~~~~~l~~~~~a~~~g~~-~--~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~--~---~~~~~~~G~~~~~v~~ 107 (377)
T 3ju7_A 36 PINQRFEQTIMSGFFQNR-G--AVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPA--T---PLAAIWCGLEPYFIDI 107 (377)
T ss_dssp HHHHHHHHHHHHHTSTTC-S--EEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTH--H---HHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHHHhCCC-C--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHH--H---HHHHHHcCCEEEEEec
Confidence 4567899999 9999932 2 58999999999999999987899999765 456764 2 2345678999999999
Q ss_pred cCCccccCHHHHHHHH-HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCC-
Q 006746 248 SWPRLRINSEKLRKMV-VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLV- 324 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i-~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~- 324 (632)
++.++.+|+++|+++| +++ .++++++ ..|.+|...|++ |.++|+ +|+++++|++|+.|.. .+....
T Consensus 108 ~~~~~~~d~~~l~~~i~~~~----~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~---~~~~~~g 176 (377)
T 3ju7_A 108 SIDDWYMDKTVLWDKIEELK----EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLM---NGGMHYG 176 (377)
T ss_dssp CTTTCSBCHHHHHHHHHHHG----GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCE---ETTEETT
T ss_pred CCccCCcCHHHHHHHHhcCC----CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCe---ECCEecc
Confidence 8667789999999998 443 1247776 346799999999 999999 9999999999988752 111111
Q ss_pred --CCcEEEEcc--ccccCCCCCceEEEEEeCC-CccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 325 --RPDFLICSF--YQIFGENPSGFGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 325 --~~Df~~~S~--hK~~G~~P~G~G~L~Vr~~-~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
..|+.++|+ +|.+| +...|+++.+++ ..+.++.....|... .+.. .+
T Consensus 177 ~~~~d~~~~S~~~~K~l~--~g~gG~~~~~~~~l~~~~~~~~~~g~~~------~~~~--------------------~~ 228 (377)
T 3ju7_A 177 QDFSGMIIYSFHATKPFG--IGEGGLIYSKNEEDIQRIKRMGNFGFDT------NREC--------------------TM 228 (377)
T ss_dssp TTCSSEEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHTBTTBCT------TSCB--------------------CS
T ss_pred CCCCcEEEEECCCCCcCC--CCCcEEEEECCHHHHHHHHHHHhcCCCC------CCce--------------------ee
Confidence 246777765 69998 523344444433 233333321112110 0000 00
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.|.. ..+..+. +++-......++.+.+|.+.+.+++.+
T Consensus 229 ~g~~---------------~~~~~~~---------------------------aa~~~~~l~~l~~~~~~~~~~~~~~~~ 266 (377)
T 3ju7_A 229 MGFN---------------CKMSEYA---------------------------AAIGIATMKKWDDKLKERTRISEWYKQ 266 (377)
T ss_dssp SCCB---------------CCCCHHH---------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cccc---------------CCCCHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0011111 222222223567888899999999999
Q ss_pred HHHccCCCCCCCCCcEEE-ECCCCCCCCCc-EEEEEEccCCCCccCHHHHHHHHHhCCcEEccCc--cCChHHHhHHHHh
Q 006746 480 ALMKLQHPNTEGNALVKI-YGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGS--LHHIWFSDKYQKE 555 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~I-ygp~~~~~rg~-ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~--~c~~~~~~~~~~~ 555 (632)
.|.++. .+++ +.+........ .+.+.+.+ + .+.+.+.+.+.++||.++.++ .|+.......
T Consensus 267 ~L~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~--- 331 (377)
T 3ju7_A 267 LLQSNG--------LMKKGWQLQKTEAVIQQFMPILCPE--E--VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRN--- 331 (377)
T ss_dssp HHHHTT--------TTTTTCBCCCCSCBCCSSEEEECCT--T--SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTT---
T ss_pred HhcCCC--------CccccccCCCCCcceEEEEEEEeCC--h--hhHHHHHHHHHHCCCceecccCCccccchhhhc---
Confidence 998872 1100 11211111111 23343332 1 357788888888999999886 4554211100
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
... ..|. + ........||++++...|.+||+++++.|++++..
T Consensus 332 --~~~---~~~p-----~----~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 332 --YKS---TDLT-----R----TNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp --SCB---SCCH-----H----HHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred --CCC---CCCH-----H----HHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 000 0000 0 00112369999999999999999999999887643
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=192.95 Aligned_cols=342 Identities=9% Similarity=-0.041 Sum_probs=219.1
Q ss_pred CCceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcC-
Q 006746 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN- 184 (632)
Q Consensus 107 ~~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~- 184 (632)
.+.++|+.+... +.|+.+++++.+.+.... ...|+.. .-..+.|+.++++++
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~------------------------~~~y~~~--~g~~~l~~~la~~~~~ 76 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDN------------------------MNQYTRG--FGHPALVKALSCLYGK 76 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGG------------------------GGSCCCT--TCCHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCcc------------------------ccCCCCC--CChHHHHHHHHHHHHH
Confidence 457899988766 357778887765432100 0001110 001356777777766
Q ss_pred -----CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC---------
Q 006746 185 -----ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW--------- 249 (632)
Q Consensus 185 -----a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~--------- 249 (632)
++++ ..|+||+|+|+|+.+++.++ .++||+|++. ..|++ + ...++..|++++.++++.
T Consensus 77 ~~~~~~~~~-~~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~--~---~~~~~~~g~~~~~~~~~~~~~~g~~~~ 149 (410)
T 3e2y_A 77 IYQRQIDPN-EEILVAVGAYGSLFNSIQGL-VDPGDEVIIMVPFYDC--Y---EPMVRMAGAVPVFIPLRSKPTDGMKWT 149 (410)
T ss_dssp HHTSCCCTT-TSEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--H---HHHHHHTTCEEEEEECEECCCCSSCCB
T ss_pred HhCCCCCCC-CCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchh--h---HHHHHHcCCEEEEEecccccccccccc
Confidence 5541 27999999999999999998 7889997654 45553 2 234567899999998862
Q ss_pred -CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc---chH-HHHHHhhCCcEEEEeccccC----CCCCCCCC
Q 006746 250 -PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY---PYL-WMRIAQENDWHILIDACALG----PKDMDSFG 320 (632)
Q Consensus 250 -~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~---pl~-i~~~a~~~g~~vlvDaaq~~----g~~m~~ld 320 (632)
.++.+++++|++++++ ++++++++..+|+||..+ +++ |+++|+++|+++++|.++.. +. ....
T Consensus 150 ~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~ 221 (410)
T 3e2y_A 150 SSDWTFDPRELESKFSS------KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVK 221 (410)
T ss_dssp GGGEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCC
T ss_pred ccCCcCCHHHHHhhcCC------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCC
Confidence 2445799999887754 358999999999999996 577 88899999999999999864 22 1112
Q ss_pred CC----CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 321 LS----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 321 ls----~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
+. ..+.++++.|++|.+|.+..++|+++.+++.++.+......
T Consensus 222 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--------------------------------- 268 (410)
T 3e2y_A 222 IATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQN--------------------------------- 268 (410)
T ss_dssp GGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHT---------------------------------
T ss_pred HHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHHHh---------------------------------
Confidence 21 23446999999999983222378888877665443221000
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHH------HhhCHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV------DSLGLTMISRRG 470 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~------~~~Gl~~I~~r~ 470 (632)
++ + +.+.+...++. .+|+.. ....++.+.++.
T Consensus 269 ----~~--~------------~~~~~~~~a~~------------------------~~l~~~~~~~~~~~~~~~~~~~~~ 306 (410)
T 3e2y_A 269 ----SF--Y------------TCATPLQAALA------------------------EAFWIDIKRMDDPECYFNSLPKEL 306 (410)
T ss_dssp ----TT--C------------CCCHHHHHHHH------------------------HHHHHHHTTTTSTTSHHHHHHHHH
T ss_pred ----hc--c------------CCChHHHHHHH------------------------HHHHhhhccccchHHHHHHHHHHH
Confidence 00 0 00111111111 333320 012367888889
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccC---------HHHHHHHHHhCCcEEccC
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE---------PVLVQKLADRENISLSYG 541 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~---------~~~V~kla~~~gI~lr~G 541 (632)
+.+.++|.+.|.++ | ++++.|. .+..+.+.+..... .++ .+.++++++++||.+..|
T Consensus 307 ~~~~~~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g 372 (410)
T 3e2y_A 307 EVKRDRMVRLLNSV------G---LKPIVPD----GGYFIIADVSSLGA-DLSDMNSDEPYDYKFVKWMTKHKKLTAIPV 372 (410)
T ss_dssp HHHHHHHHHHHHTT------T---CEEEBCS----BSSEEEEECGGGCC-CCTTCCSSCCHHHHHHHHHHHHHSEECEEG
T ss_pred HHHHHHHHHHHHHC------C---CeecCCC----ccEEEEEEchhhhc-ccccccccccCHHHHHHHHHHHcCEEEeCc
Confidence 99999999999887 4 4555552 34455555543111 122 266677888899999988
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
..|...... ..+.+.||+|++. +.|||+++++.|++|
T Consensus 373 ~~f~~~~~~-----------------------------~~~~~~iRis~~~--~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 373 SAFCDSKSK-----------------------------PHFEKLVRFCFIK--KDSTLDAAEEIFRAW 409 (410)
T ss_dssp GGGSCTTTH-----------------------------HHHTTEEEEECCC--CHHHHHHHHHHHHTC
T ss_pred hhhCCCCCC-----------------------------CCCCCEEEEEEcC--CHHHHHHHHHHHHhc
Confidence 666431100 0134799999876 999999999998764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-19 Score=190.52 Aligned_cols=304 Identities=15% Similarity=0.132 Sum_probs=199.0
Q ss_pred HHHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHH-hcCCEE
Q 006746 173 SAMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSE-KRGARV 242 (632)
Q Consensus 173 ~~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~-~~G~~v 242 (632)
.+.|++|+++++ ++++ .|+||+|+|+|+.+++.++ .++||+|++. ..|++ .. ..++ ..|+++
T Consensus 89 ~~l~~~la~~~~~~~~~~~~~~~~--~v~~~~gg~~a~~~~~~~l-~~~gd~vl~~~p~~~~-~~----~~~~~~~g~~~ 160 (435)
T 3piu_A 89 PAFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPG-FD----RDLKWRTGVEI 160 (435)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-HH----HHTTTTTCCEE
T ss_pred HHHHHHHHHHHHHhhCCCCCCCHH--HEEEcCChHHHHHHHHHHh-cCCCCeEEECCCcccc-HH----HHHHHhcCCEE
Confidence 478888888887 5554 7999999999999999998 6889997754 45654 22 2233 579999
Q ss_pred EEEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC----C
Q 006746 243 MSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG----P 313 (632)
Q Consensus 243 ~~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~----g 313 (632)
+.++.+.. ...+|+++|+++|.+......++++++++..+|+||..+|. + |+++|+++|+++++|.++.. +
T Consensus 161 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~ 240 (435)
T 3piu_A 161 VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240 (435)
T ss_dssp EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS
T ss_pred EEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence 99998732 23479999999997632112357899999999999999987 4 67789999999999999865 2
Q ss_pred CCCCCCCCC----C---------CCCcEEEEccccccCCCCCceEEEEEeCC-CccccCCCCCCCceeeccccccccccc
Q 006746 314 KDMDSFGLS----L---------VRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTD 379 (632)
Q Consensus 314 ~~m~~ldls----~---------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~-~~~~L~~~~~gG~v~~~~~~~~~~~~~ 379 (632)
.. ...+. + .+.++++.|++|.||.+...+|+++++++ ..+.++.. ..++
T Consensus 241 ~~--~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~------------~~~~--- 303 (435)
T 3piu_A 241 PS--FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM------------SSFG--- 303 (435)
T ss_dssp SC--CCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHH------------GGGS---
T ss_pred CC--CcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHH------------hhcC---
Confidence 21 11111 1 12238999999999842223799888543 32222110 0000
Q ss_pred ccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH---
Q 006746 380 EFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD--- 456 (632)
Q Consensus 380 ~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd--- 456 (632)
+ .+.+....+. ..|+
T Consensus 304 ----------------------~----------------~~~~~~~~~~------------------------~~l~~~~ 321 (435)
T 3piu_A 304 ----------------------L----------------VSSQTQHLLS------------------------AMLSDKK 321 (435)
T ss_dssp ----------------------C----------------CCHHHHHHHH------------------------HHHHCHH
T ss_pred ----------------------C----------------CCHHHHHHHH------------------------HHhcChH
Confidence 0 0000001111 2222
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc---cCHHHHHHHHHh
Q 006746 457 QVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK---IEPVLVQKLADR 533 (632)
Q Consensus 457 ~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~---i~~~~V~kla~~ 533 (632)
++.+ .++...++.+...++|.+.|.++ | ++++.+ ..+.++.+.+.+..... -..+.+++++++
T Consensus 322 ~~~~-~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~----~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 387 (435)
T 3piu_A 322 LTKN-YIAENHKRLKQRQKKLVSGLQKS------G---ISCLNG----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYE 387 (435)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHTT------T---CEECCC----CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhc------C---CcccCC----CeeEEEEEEcccccccCCchhHHHHHHHHHHH
Confidence 1111 34667788888899999999876 4 445443 23456767765421000 012455667777
Q ss_pred CCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 534 ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 534 ~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+||.++.|..|.+ .+.++||++++.. +.+||+++++.|+++++.
T Consensus 388 ~gi~v~~g~~~~~----------------------------------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 388 VHLNISPGSSCHC----------------------------------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp SCEECEEGGGGTC----------------------------------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCcccCC----------------------------------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 7999987754332 1346999999877 999999999999998764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=185.07 Aligned_cols=325 Identities=11% Similarity=0.069 Sum_probs=210.0
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|+|.++. |+.++.+++++.+.+... .+.... | ..+..++.+++++
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la 92 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL--------------------IHCSNL--F---WNRPQMELAELLS 92 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------SCCCTT--S---EEHHHHHHHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhc--------------------ccCccc--c---CCHHHHHHHHHHH
Confidence 45789998654 455788888876543211 010000 1 2356778999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-----CC-CCeEE-EeccccchhhHHHHHHHHhcCCE------------
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF-----MS-VKNLL-TVYDYESEAVEAMIRTSEKRGAR------------ 241 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~-----~~-gd~il-t~~d~~s~~v~~~~~~a~~~G~~------------ 241 (632)
+++|. + .|+||+|+|+|+.+++..+.. .+ +++|+ ....||+....++ +..|.+
T Consensus 93 ~~~g~--~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~----~~~g~~~~~~~~~p~~~~ 164 (397)
T 2ord_A 93 KNTFG--G--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSL----TATGQPKYQKPFEPLVPG 164 (397)
T ss_dssp HTTTS--C--EEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHH----HHSBCHHHHGGGCSCCTT
T ss_pred HhcCC--C--eEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhh----hccCChhhccccCCCCCC
Confidence 99984 3 699999999999999887621 04 45665 4456765333232 233443
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcc----ccchH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA----RYPYL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~----~~pl~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
+..++. .|+++|++++++ ++++|++.+.+|+||. ..+++ |.++|+++|+++++|.++.. +..
T Consensus 165 ~~~~~~------~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~ 232 (397)
T 2ord_A 165 FEYFEF------NNVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRT 232 (397)
T ss_dssp EEEECT------TCHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred eeEecC------CCHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccC
Confidence 656654 278899888864 3589999999999999 35677 88999999999999999862 211
Q ss_pred CCCCCCCCC--CCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 316 MDSFGLSLV--RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 316 m~~ldls~~--~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
-..+.+..+ .+|++ ++.|.+|. +.++|+++++++.+ .+.+...++ .|
T Consensus 233 g~~~~~~~~~~~~d~~--s~sK~~~~-G~r~G~~~~~~~~~-~l~~~~~~~----------~~----------------- 281 (397)
T 2ord_A 233 GKLFAYQKYGVVPDVL--TTAKGLGG-GVPIGAVIVNERAN-VLEPGDHGT----------TF----------------- 281 (397)
T ss_dssp SSSSHHHHHTCCCSEE--EECGGGGT-TSCCEEEEECSTTC-CCCTTSSCC----------SS-----------------
T ss_pred ccchhhhhhCCCCCee--eeccccCC-CcCeEEEEEchHhc-ccCCCCcCC----------CC-----------------
Confidence 002222222 37976 56798883 45699999998865 553311100 00
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
. .+.+...++. ++|+.+.+ +.+.++.+.+
T Consensus 282 ------------~------------~~~~~~~a~~------------------------~~l~~~~~---~~~~~~~~~~ 310 (397)
T 2ord_A 282 ------------G------------GNPLACRAGV------------------------TVIKELTK---EGFLEEVEEK 310 (397)
T ss_dssp ------------T------------TCHHHHHHHH------------------------HHHHHHTS---TTHHHHHHHH
T ss_pred ------------C------------CCHHHHHHHH------------------------HHHHHHHh---CCHHHHHHHH
Confidence 0 0111112221 56665543 4677888889
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
.++|.+.|.++.. +.+.+... ...+.++.|.+.+. .+...+.+.+.++||.++.|
T Consensus 311 ~~~l~~~L~~~~~----~~~~~~~~-----~~~g~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~------------ 365 (397)
T 2ord_A 311 GNYLMKKLQEMKE----EYDVVADV-----RGMGLMIGIQFREE----VSNREVATKCFENKLLVVPA------------ 365 (397)
T ss_dssp HHHHHHHHHHHHH----HCTTEEEE-----EEETTEEEEEECTT----SCHHHHHHHHHHTTEECEEE------------
T ss_pred HHHHHHHHHHHHH----hCCceEEE-----EEEeEEEEEEECCh----HHHHHHHHHHHHCCCEEccC------------
Confidence 9999999887610 12333221 12477888887642 24555555555589988643
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+.+.||+|+++.++.+|++++++.|+++++
T Consensus 366 ----------------------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 366 ----------------------------GNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp ----------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 135899999999999999999999998875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=182.49 Aligned_cols=306 Identities=12% Similarity=0.109 Sum_probs=206.7
Q ss_pred CceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcC--
Q 006746 108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN-- 184 (632)
Q Consensus 108 ~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~-- 184 (632)
+.+|||++... ..|+.+++++.+.+.... ...|+.. . ..+.|+.|+++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~------------------------~~~y~~~--~-~~~lr~~la~~~~~~ 72 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDA------------------------LRIYYDS--P-DEELIEKILSYLDTD 72 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGG------------------------GGSCCCS--S-CHHHHHHHHHHHTCS
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhh------------------------hhcCCCC--c-hHHHHHHHHHHcCCC
Confidence 57899998875 368889998876542100 0011110 1 3589999999999
Q ss_pred -CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 185 -ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 185 -a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
++++ .|+||+|+|+|+.+++.++ ||+|++...|++ ....++..|++++.++.+ +++.+++++|
T Consensus 73 ~~~~~--~v~~~~G~~~al~~~~~~~----gd~Vl~~p~y~~-----~~~~~~~~g~~~~~v~~~-~~~~~d~~~l---- 136 (335)
T 1uu1_A 73 FLSKN--NVSVGNGADEIIYVMMLMF----DRSVFFPPTYSC-----YRIFAKAVGAKFLEVPLT-KDLRIPEVNV---- 136 (335)
T ss_dssp SCCGG--GEEEESSHHHHHHHHHHHS----SEEEECSSSCHH-----HHHHHHHHTCEEEECCCC-TTSCCCCCCC----
T ss_pred CCCHH--HEEEcCChHHHHHHHHHHh----CCcEEECCCcHH-----HHHHHHHcCCeEEEeccC-CCCCCCHHHc----
Confidence 7765 7999999999999999998 888775533432 234567789999998886 4445666665
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC-CCCCCCCC-CCCCCCcEEEEccccccCCC
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG-PKDMDSFG-LSLVRPDFLICSFYQIFGEN 340 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~-g~~m~~ld-ls~~~~Df~~~S~hK~~G~~ 340 (632)
+ +++++++++.+|+||..+|.+ +.++++..| ++++|.++.. ... ..++ +...+.++++.|++|++|
T Consensus 137 -~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g-- 205 (335)
T 1uu1_A 137 -G------EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFS-- 205 (335)
T ss_dssp -C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTT--
T ss_pred -C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcC--
Confidence 2 248999899999999999999 999998888 8999999863 111 1122 234567899999999999
Q ss_pred CCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCC
Q 006746 341 PSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 418 (632)
Q Consensus 341 P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt 418 (632)
+.| +|+++++++.++.+.+... .| +
T Consensus 206 ~~G~r~G~~~~~~~~~~~l~~~~~------------~~-----------------------------------------~ 232 (335)
T 1uu1_A 206 LAAQRVGYVVASEKFIDAYNRVRL------------PF-----------------------------------------N 232 (335)
T ss_dssp CGGGCCEEEEECHHHHHHHHHHSC------------TT-----------------------------------------C
T ss_pred CcccCeEEEEeCHHHHHHHHHhcC------------CC-----------------------------------------C
Confidence 447 6999998766554432100 00 0
Q ss_pred cccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEE
Q 006746 419 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 498 (632)
Q Consensus 419 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iy 498 (632)
.+.+...++. ++|+.. ..++.+.++.+.+.+++.+.|.++ |. +++
T Consensus 233 ~~~~~~~~~~------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~------g~---~~~ 277 (335)
T 1uu1_A 233 VSYVSQMFAK------------------------VALDHR--EIFEERTKFIVEERERMKSALREM------GY---RIT 277 (335)
T ss_dssp SCHHHHHHHH------------------------HHHHTH--HHHHHHHHHHHHHHHHHHHHHHHH------TC---CBC
T ss_pred cCHHHHHHHH------------------------HHhCCH--HHHHHHHHHHHHHHHHHHHHHHHC------Cc---EEc
Confidence 0111112221 444432 136778888999999999999887 32 233
Q ss_pred CCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccccc
Q 006746 499 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 578 (632)
Q Consensus 499 gp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 578 (632)
| ..+..+.+.+.+ .+...+.+.+.++||.++.
T Consensus 278 -~----~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~-------------------------------------- 309 (335)
T 1uu1_A 278 -D----SRGNFVFVFMEK-----EEKERLLEHLRTKNVAVRS-------------------------------------- 309 (335)
T ss_dssp -C----CCSSEEEEECCT-----HHHHHHHHHHHHHTEEEEE--------------------------------------
T ss_pred -C----CCCeEEEEECCC-----CCHHHHHHHHHHCCEEEEE--------------------------------------
Confidence 2 235667666543 3444555544567998863
Q ss_pred CCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 579 ANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 579 ~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
..+.||+|++ +.+|++++++.|+++
T Consensus 310 ---~~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 310 ---FREGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp ---ETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred ---CCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 1248999985 579999999998764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-18 Score=178.67 Aligned_cols=280 Identities=11% Similarity=0.075 Sum_probs=190.2
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec-cCC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF-SWP 250 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~-~~~ 250 (632)
.+.|+.+++++|++++ .|+||+|+|+|+.+++.++. ||+|++. ..|++ ....++..|++++.++. + +
T Consensus 53 ~~lr~~la~~~~~~~~--~i~~t~g~~~al~~~~~~l~---gd~Vi~~~p~~~~-----~~~~~~~~g~~~~~v~~~~-~ 121 (350)
T 3fkd_A 53 GTLRQMLAKRNSVDNN--AILVTNGPTAAFYQIAQAFR---GSRSLIAIPSFAE-----YEDACRMYEHEVCFYPSNE-D 121 (350)
T ss_dssp HHHHHHHHHHTTCCGG--GEEEESHHHHHHHHHHHHTT---TCEEEEEESCCHH-----HHHHHHHTTCEEEEEETTS-C
T ss_pred HHHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHHC---CCEEEEeCCCcHH-----HHHHHHHcCCeEEEEecCC-c
Confidence 4789999999999865 79999999999999999985 8997654 44543 23556778999999998 5 3
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCC-cEEEEeccccCCC-C--CCCCCCCCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEND-WHILIDACALGPK-D--MDSFGLSLVR 325 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g-~~vlvDaaq~~g~-~--m~~ldls~~~ 325 (632)
...+++ + +++++++++.+|+||..+|++ +.++++..+ .++++|.++.... + .....+...+
T Consensus 122 ~~~~~~--------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 187 (350)
T 3fkd_A 122 IGEADF--------S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRK 187 (350)
T ss_dssp GGGSCC--------T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCS
T ss_pred cccCcc--------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCC
Confidence 233332 2 358999999999999999999 988888765 6999999876421 0 0112333456
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCC
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 405 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f 405 (632)
.++++.|++|.+|.+..++|+++++++.++.+..... .|.
T Consensus 188 ~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~------------~~~---------------------------- 227 (350)
T 3fkd_A 188 NLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST------------PWA---------------------------- 227 (350)
T ss_dssp SEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC------------TTC----------------------------
T ss_pred CEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC------------CCC----------------------------
Confidence 6799999999988422347998887666554432110 000
Q ss_pred CccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHc
Q 006746 406 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG--LTMISRRGRCLINWLVNALMK 483 (632)
Q Consensus 406 ~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G--l~~I~~r~~~L~~~L~~~L~~ 483 (632)
.+.+... .++..+...+ ++.+.++. .+.+++.+.|.+
T Consensus 228 -------------~~~~~~~---------------------------~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~ 266 (350)
T 3fkd_A 228 -------------VNALAIE---------------------------AAKFILIHPAQFTLPIRKWQ-RNTVDFITALNR 266 (350)
T ss_dssp -------------SCHHHHH---------------------------HHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHH
T ss_pred -------------CCHHHHH---------------------------HHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 0000111 2222233322 23444444 778888888887
Q ss_pred cCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHH-HHHhCCcEEccCccCChHHHhHHHHhhhhhhhh
Q 006746 484 LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQK-LADRENISLSYGSLHHIWFSDKYQKEKDNVLEK 562 (632)
Q Consensus 484 l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~k-la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~ 562 (632)
+ |.++++.+ .+..+.+.+.+. +...+.+ |++++||.++.|..|..
T Consensus 267 ~--------~~~~~~~~-----~~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v~~g~~f~~---------------- 312 (350)
T 3fkd_A 267 L--------DGVEVHPS-----GTTFFLLRLKKG-----TAAELKKYMLEEYNMLIRDASNFRG---------------- 312 (350)
T ss_dssp S--------TTEEECCC-----SSSEEEEEESSS-----CHHHHHHHHHHTTCEECEECTTSTT----------------
T ss_pred C--------CCcEECCC-----CCcEEEEECCCC-----CHHHHHHHHHHHCCEEEEeCccCCC----------------
Confidence 6 66777533 466776777652 4555554 55449999998865531
Q ss_pred hhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 563 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
.+.+.||+|++ +.+|+++|+++|++++...
T Consensus 313 ------------------~~~~~iRis~~---~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 313 ------------------LDESYVRITTQ---RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp ------------------CCTTEEEEECC---CHHHHHHHHHHHHHHHTC-
T ss_pred ------------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHHHh
Confidence 13469999976 8999999999999987664
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-19 Score=193.31 Aligned_cols=315 Identities=13% Similarity=0.071 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC--------------eEEE--eccccchhhH
Q 006746 172 ESAMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVK--------------NLLT--VYDYESEAVE 229 (632)
Q Consensus 172 ~~~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd--------------~ilt--~~d~~s~~v~ 229 (632)
+.+.|+.|++++ +++++ .|+||+|+|+|+++++.++ .++|| +|++ ...|+. ...
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~-~~~ 160 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSE--NIALTNGSQNAFFYLFNLF-GGAFVNEHSQDKESKSVDKSILLPLTPEYIG-YSD 160 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHS-SEEEECC-------CEEEEEEEESSSSCCGG-GTT
T ss_pred CHHHHHHHHHHHHhhcCCCCCHH--HEEEecCcHHHHHHHHHHH-hCCCccccccccccccccceEEEeCCCCccc-hhh
Confidence 357888888887 56655 7999999999999999998 67777 6654 234443 111
Q ss_pred HH--HHHHHhcCCEEEEEeccCCcc----ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhh
Q 006746 230 AM--IRTSEKRGARVMSAEFSWPRL----RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQE 299 (632)
Q Consensus 230 ~~--~~~a~~~G~~v~~v~~~~~~~----~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~ 299 (632)
.+ .......|..+..++++..++ .+|+++|++++..-+ ++++++++++.+|+||..+| ++ |+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~ 237 (444)
T 3if2_A 161 VHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKE---GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKR 237 (444)
T ss_dssp CCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHT---TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred cccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcC---CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 00 001245688888888763232 689999998743211 24689999999999999999 77 8888999
Q ss_pred CCcEEEEeccccCCCC---CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccc
Q 006746 300 NDWHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLW 376 (632)
Q Consensus 300 ~g~~vlvDaaq~~g~~---m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~ 376 (632)
+|+++++|.++..+.. ...+.....+.++++.|++|+ +.+..++|+++.++++++.+..... .
T Consensus 238 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~------------~- 303 (444)
T 3if2_A 238 YDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNA------------V- 303 (444)
T ss_dssp TTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHH------------H-
T ss_pred CCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHH------------h-
Confidence 9999999999874321 012222235678999999996 5322446777766555443321100 0
Q ss_pred cccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH
Q 006746 377 LTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD 456 (632)
Q Consensus 377 ~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd 456 (632)
.....+ ..... .+..
T Consensus 304 ----------------------~~~~~~----------------~~~~~---------------------------a~~~ 318 (444)
T 3if2_A 304 ----------------------VNLAPT----------------RFGAA---------------------------IATP 318 (444)
T ss_dssp ----------------------HHSSCC----------------CHHHH---------------------------HHHH
T ss_pred ----------------------ccCCCC----------------hHHHH---------------------------HHHH
Confidence 000000 00000 1111
Q ss_pred HHHhhCH-----HHHHHHHHHHHHHHHHHHHc-cCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHH
Q 006746 457 QVDSLGL-----TMISRRGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKL 530 (632)
Q Consensus 457 ~~~~~Gl-----~~I~~r~~~L~~~L~~~L~~-l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kl 530 (632)
.+....+ +.+.++.+...+.+.+.|.+ +. + -.++++.|. .+..+.+.+.+. .++...+.+.
T Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~-~~~~~~~~~----~g~~~~~~~~~~---~~~~~~l~~~ 385 (444)
T 3if2_A 319 LVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALG-----D-YPLMIHKPE----GAIFLWLWFKDL---PISTLDLYER 385 (444)
T ss_dssp HHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSS-----S-SSEEEECCC----BSSEEEEEETTC---SSCHHHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c-CCceEecCC----ccEEEEEEcCCC---CCCHHHHHHH
Confidence 1111111 11334444555555555554 21 0 136676653 456666666531 1567777777
Q ss_pred HHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 531 ADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 531 a~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+.++||.++.|..|..+..... .....+.||+|++. +.+||+++++.|++++
T Consensus 386 l~~~gi~v~~g~~~~~~~~~~~--------------------------~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~ 437 (444)
T 3if2_A 386 LKAKGTLIVPSEYFFPGVDVSD--------------------------YQHAHECIRMSIAA--DEQTLIDGIKVIGEVV 437 (444)
T ss_dssp HHHTTEECEEGGGSCTTCCCTT--------------------------CSGGGSEEEEESSS--CHHHHHHHHHHHHHHH
T ss_pred HHHCCeEEecchhhcCCCCCcc--------------------------cccCCCeEEEEEeC--CHHHHHHHHHHHHHHH
Confidence 7889999999987765311000 01134699999997 9999999999999987
Q ss_pred hhc
Q 006746 611 DAD 613 (632)
Q Consensus 611 ~~~ 613 (632)
..-
T Consensus 438 ~~~ 440 (444)
T 3if2_A 438 REL 440 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=183.23 Aligned_cols=291 Identities=9% Similarity=0.029 Sum_probs=187.9
Q ss_pred HHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCC--CCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMS--VKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~--gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.+++++ |++.+...|+||+|+|+|+.+++.++ .++ ||+|++. ..|++ ....++..|++++.++
T Consensus 63 ~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~-~~~~~gd~vl~~~p~~~~-----~~~~~~~~g~~~~~~~ 136 (376)
T 3ezs_A 63 SLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFV-LFDYQNPTIAYPNPFYQI-----YEGAAKFIKAKSLLMP 136 (376)
T ss_dssp HHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHH-TTTCSSCEEEEEESCCTH-----HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHH-cCCCCCCEEEEecCCcHh-----HHHHHHHcCCEEEEcc
Confidence 4555555555 87322338999999999999999998 678 8997654 45553 2345677899999999
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCC-CCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKD-MDSFGL 321 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~-m~~ldl 321 (632)
.++.. .+++ ++++.+.+++ +++++++.+|+||..+|.+ |+++|+++|+++++|.++..... -....+
T Consensus 137 ~~~~~-~~~~-~l~~~~~~~~------~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 208 (376)
T 3ezs_A 137 LTKEN-DFTP-SLNEKELQEV------DLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSL 208 (376)
T ss_dssp CCGGG-TSCC-CCCHHHHHHC------SEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCH
T ss_pred cCCCC-Ccch-hHHhhhccCC------CEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCH
Confidence 87432 3444 6666676543 7899999999999999954 56679999999999999876210 001111
Q ss_pred ---------CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 322 ---------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 322 ---------s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
...+.++++.|++|.+|.+..++|+++.+++.++.+......
T Consensus 209 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~----------------------------- 259 (376)
T 3ezs_A 209 LEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAY----------------------------- 259 (376)
T ss_dssp HHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTT-----------------------------
T ss_pred HHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhh-----------------------------
Confidence 145778999999999984223468888776655443221000
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC 472 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~ 472 (632)
. . .+.+.+...++. ++|+.. ..++.+.++.+.
T Consensus 260 --------~--~------------~~~~~~~~~a~~------------------------~~l~~~--~~~~~~~~~~~~ 291 (376)
T 3ezs_A 260 --------L--G------------YTSANAIQKASE------------------------AAWLDD--RHAEFFRNIYAN 291 (376)
T ss_dssp --------T--C------------CCCCHHHHHHHH------------------------HHHHCS--HHHHHHHHHHHH
T ss_pred --------h--c------------CCCChHHHHHHH------------------------HHHhCc--HHHHHHHHHHHH
Confidence 0 0 001111122221 344321 125777778888
Q ss_pred HHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHH
Q 006746 473 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 473 L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
+.+++.+.|..+ . .| ..+..+.+.+.+ ..+.+++|++++||.++.|..|...
T Consensus 292 ~~~~l~~~l~~~-----------~--~~----~~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~~~~~----- 343 (376)
T 3ezs_A 292 NLKLARKIFKNT-----------L--IY----PYSFYVYLPVQN------GENFAKTLYQNEGIITLPALYLGRN----- 343 (376)
T ss_dssp HHHHHHHHSTTC-----------C--CC----SBSSEEEEECSC------HHHHHHHHHHHHCCBCEEGGGGCST-----
T ss_pred HHHHHHHHhcCC-----------C--CC----CcceEEEEECCC------HHHHHHHHHHhCCEEEeCcHHhCCC-----
Confidence 888887776411 1 11 245555555541 2344455666589999988655421
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
....+.||+|++. |.+||+++++.|+++++.
T Consensus 344 ---------------------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 344 ---------------------------RIGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp ---------------------------TTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred ---------------------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 1234699999984 999999999999998753
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-17 Score=179.85 Aligned_cols=351 Identities=11% Similarity=0.094 Sum_probs=218.1
Q ss_pred CCceEeecCCC---CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc
Q 006746 107 SNHTCLDYFGI---GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (632)
Q Consensus 107 ~~~vyLD~ag~---gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l 183 (632)
.+..|||+.+. ..++..+++++..... .|+ ....+.+.|++|++++
T Consensus 40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~~~~-----------------------------~y~--~~~~~~~l~~~la~~~ 88 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAMSDKQWAGMMMGDE-----------------------------AYA--GSENFYHLERTVQELF 88 (456)
T ss_dssp GGGCSEECSCSSSCCCCCHHHHHHHTTCCC-----------------------------CSS--SCHHHHHHHHHHHHHH
T ss_pred cccceeeeccccCCccCCHHHHHHhhcchh-----------------------------hcc--cChhHHHHHHHHHHHh
Confidence 45779998543 3667888888652100 011 1234568999999999
Q ss_pred CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCC---------cccc
Q 006746 184 NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWP---------RLRI 254 (632)
Q Consensus 184 ~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~---------~~~i 254 (632)
+.+ .++||+|+|+|+.+++.++ +++|| |+....|+. ++ ...++..|++++.++++.. .+.+
T Consensus 89 ~~~----~~~~~~~gt~a~~~al~~l-~~~gd-i~~~~~~~~-~~---~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~ 158 (456)
T 2ez2_A 89 GFK----HIVPTHQGRGAENLLSQLA-IKPGQ-YVAGNMYFT-TT---RYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDI 158 (456)
T ss_dssp CCS----EEEEESSHHHHHHHHHHHH-CCTTC-EEEESSCCH-HH---HHHHHHTTCEEEECBCGGGGCTTCCCSCTTCB
T ss_pred CCC----cEEEeCCcHHHHHHHHHHh-CCCCC-Eeccccccc-hh---HHHHHHcCCEEEEecccccccccccccccCCC
Confidence 985 5999999999999999998 78999 777777754 22 2334678999999988621 2568
Q ss_pred CHHHHHHHHHhcCcCCCceeEEEEeccCC-CCccccc---hH-HHHHHhhCCcEEEEeccccCC---------CCCCCCC
Q 006746 255 NSEKLRKMVVSKGKKKKQRGLFVFPLHSR-MTGARYP---YL-WMRIAQENDWHILIDACALGP---------KDMDSFG 320 (632)
Q Consensus 255 ~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn-~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g---------~~m~~ld 320 (632)
|+++|+++|++++ ...++++++...+| .||..+| ++ |+++|+++|+++++|.++..| .......
T Consensus 159 d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~ 236 (456)
T 2ez2_A 159 DLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKS 236 (456)
T ss_dssp CHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSC
T ss_pred CHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcc
Confidence 9999999998754 12458888887777 9999998 88 999999999999999998763 2101111
Q ss_pred CC------CCCCcEEEEccccccCCCCCceEEEEEe-CCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 321 LS------LVRPDFLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 321 ls------~~~~Df~~~S~hK~~G~~P~G~G~L~Vr-~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
+. ...+|++++|+||+++. | ..|+++.+ +++++.+..... .+
T Consensus 237 ~~~~~~~~~~~~d~~~~S~kk~~~~-~-~gG~~~~~~~~~~~~~~~~~~------------~~----------------- 285 (456)
T 2ez2_A 237 IAEIVHEMFSYADGCTMSGKKDCLV-N-IGGFLCMNDDEMFSSAKELVV------------VY----------------- 285 (456)
T ss_dssp HHHHHHHHHTTCSEEEEETTTTTCC-S-SCEEEEESCHHHHHHHHHHHH------------HH-----------------
T ss_pred hhhhhhhhcccCCEEEEeCcccCCC-C-ceeEEEECCHHHHHHHHHHHh------------hc-----------------
Confidence 10 12469999999998773 3 36777774 444443322100 00
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
.+...+. | .+...+.+ .++...+.+. +...+|.+.+
T Consensus 286 ------~~~~~~~----------~-~~~~~~~a--------------------------~a~~~~~~~~-~~~~~~~~~~ 321 (456)
T 2ez2_A 286 ------EGMPSYG----------G-LAGRDMEA--------------------------MAIGLREAMQ-YEYIEHRVKQ 321 (456)
T ss_dssp ------TCCTTTT----------T-CCHHHHHH--------------------------HHHHHHHHTC-HHHHHHHHHH
T ss_pred ------cCccccc----------C-cchhHHHH--------------------------HHHHHHHHhH-HHHHHHHHHH
Confidence 0000000 0 00011111 1333333333 4566777888
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEc----cCCCCcc-CHHHHHHHHHhCCcEEc-cCccCChH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVF----DWKREKI-EPVLVQKLADRENISLS-YGSLHHIW 547 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~----~~~G~~i-~~~~V~kla~~~gI~lr-~G~~c~~~ 547 (632)
.+++.+.|.++ |.+ ++.|. .+..+.+.+. +.+...+ ...+..+|+.++||.+. .|.+|.+.
T Consensus 322 ~~~l~~~L~~~------g~~---~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~ 388 (456)
T 2ez2_A 322 VRYLGDKLKAA------GVP---IVEPV----GGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR 388 (456)
T ss_dssp HHHHHHHHHHT------TCC---BCSSC----CSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB
T ss_pred HHHHHHHHhcC------CCc---cccCC----CceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccccccccc
Confidence 99999999886 332 33442 3556666653 2121112 11113444477899753 45433210
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCC-CCHHHHHHHHHHHHHhhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~-~t~eDV~rlv~~l~~~l~~ 612 (632)
... . +. ....+.+.||+|++.. ++.+||+++++.|+++++.
T Consensus 389 --~~~-------~------g~---------~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 389 --NNV-------T------GE---------HHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp --CTT-------T------CS---------BCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred --Ccc-------c------cc---------cccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 000 0 00 0011246899999988 9999999999999999876
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=186.24 Aligned_cols=340 Identities=15% Similarity=0.080 Sum_probs=208.8
Q ss_pred CCceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHH--c
Q 006746 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF--L 183 (632)
Q Consensus 107 ~~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~--l 183 (632)
.+.++|+.+... +.++.+++++.+.+.... +......|+.. .-..+.|+.|+++ .
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--------------------~~~~~~~y~~~--~g~~~lr~~la~~l~~ 90 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARLS--------------------SPTTCRGYGPD--FGLPALRQKLSEDFYR 90 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHHT--------------------SSSCCCCCCCT--TCCHHHHHHHHHTTST
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhccc--------------------ccccccCCCCC--CCCHHHHHHHHHHHHc
Confidence 457888887665 456777777655332110 00000112110 1124789999999 4
Q ss_pred C-CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCE-EEEEeccCCccccCHHHHH
Q 006746 184 N-ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGAR-VMSAEFSWPRLRINSEKLR 260 (632)
Q Consensus 184 ~-a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~-v~~v~~~~~~~~i~~~~l~ 260 (632)
| ++++ .|+||+|+|+++.++...+ .+||+|++. ..|++ ....++..|++ ++.++.+. .+.+.. +++
T Consensus 91 g~~~~~--~v~~~~G~~~al~~~~~~~--~~gd~Vl~~~p~y~~-----~~~~~~~~g~~~~~~~~~~~-~~~~~~-~l~ 159 (400)
T 3asa_A 91 GFVDAK--EIFISDGAKVDLFRLLSFF--GPNQTVAIQDPSYPA-----YLDIARLTGAKEIIALPCLQ-ENAFFP-EFP 159 (400)
T ss_dssp TSSCGG--GEEEESCHHHHHHHHHHHH--CSSCEEEEEESCCHH-----HHHHHHHTTCSEEEEEECCG-GGTTCC-CCC
T ss_pred CCCCHH--HEEEccChHHHHHHHHHHc--CCCCEEEECCCCcHH-----HHHHHHHcCCcceEecccch-hcCccc-Chh
Confidence 7 5554 7999999999999987654 689997654 45553 23445678998 99998862 222221 111
Q ss_pred HHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEecccc-CCCC-CCCCCCCCC----CCcEEE
Q 006746 261 KMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACAL-GPKD-MDSFGLSLV----RPDFLI 330 (632)
Q Consensus 261 ~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~-~g~~-m~~ldls~~----~~Df~~ 330 (632)
+ + .+++++++++.+|+||..+|. + |+++|+++|+++++|.++. ...+ ..+..+..+ +.++++
T Consensus 160 ~-~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 231 (400)
T 3asa_A 160 E-D-------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEI 231 (400)
T ss_dssp T-T-------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEE
T ss_pred h-c-------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEE
Confidence 1 0 246899999999999999985 4 6778999999999999987 3211 012333222 245999
Q ss_pred EccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCcc
Q 006746 331 CSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP 408 (632)
Q Consensus 331 ~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~ 408 (632)
.|++|+|| +.| +|+++++++....+. . .+ ...+ ... ...+ +
T Consensus 232 ~s~sK~~g--~~GlriG~~~~~~~~~~~~~----~-~~------~~~~----------------~~~---~~~~--~--- 274 (400)
T 3asa_A 232 NSFSKPLG--FAGIRLGWTVIPQELTYADG----H-FV------IQDW----------------ERF---LSTT--F--- 274 (400)
T ss_dssp EECCGGGT--TTTCCCEEEECCTTCBCTTS----C-BH------HHHH----------------HHH---HHHH--C---
T ss_pred ecchhhcC--CcchheeEEeeChhhccchh----h-hH------HHHH----------------HHH---hccC--c---
Confidence 99999999 446 699999887643221 0 00 0000 000 0000 0
Q ss_pred chhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCC
Q 006746 409 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN 488 (632)
Q Consensus 409 ~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~ 488 (632)
++.+.+...++. ++|+ ...++.+.++.+.+.++|.+.|.++
T Consensus 275 --------~~~~~~~~~a~~------------------------~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~---- 315 (400)
T 3asa_A 275 --------NGASIPAQEAGV------------------------AGLS---ILPQLEAIHYYRENSDLLRKALLAT---- 315 (400)
T ss_dssp --------CCCCHHHHHHHH------------------------HHHH---HTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred --------cCCChHHHHHHH------------------------HHhC---cHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 111222222221 3333 2257788899999999999999887
Q ss_pred CCCCCcEEEECCCCCCCCCcEEEEE-EccCCCCccCH-HHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcc
Q 006746 489 TEGNALVKIYGPKIRFDRGPALAFN-VFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE 566 (632)
Q Consensus 489 ~~G~p~v~Iygp~~~~~rg~ivaFn-v~~~~G~~i~~-~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~ 566 (632)
| +++++|. .+..+.+. +.+ + ++. +.++++++++||.++.|..|...
T Consensus 316 --g---~~~~~~~----~~~~~~~~~~~~--~--~~~~~~~~~l~~~~gv~v~~g~~f~~~------------------- 363 (400)
T 3asa_A 316 --G---FEVFGGE----HAPYLWVKPTQA--N--ISDRDLFDFFLREYHIAITPGIGFGRS------------------- 363 (400)
T ss_dssp --T---CEEEECS----SSSEEEEECCCT--T--CCTTTHHHHHHHHHSEECEEGGGGCGG-------------------
T ss_pred --C---CeeeCCC----CceEEEEeccCC--C--CCHHHHHHHHHHhCCEEEeChhHhCCC-------------------
Confidence 4 4566542 35667777 542 1 233 45567777789999887544320
Q ss_pred ccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 567 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+.||+| ++++.+|++++++.|+++++.
T Consensus 364 ---------------~~~~iRis--~~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 364 ---------------GSGFVRFS--SLGKREDILAACERLQMAPAL 392 (400)
T ss_dssp ---------------GTTCEEEE--CCSCHHHHHHHHHHHHC----
T ss_pred ---------------CCCEEEEE--eeCCHHHHHHHHHHHHHHHHh
Confidence 23589999 478999999999999887653
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=178.88 Aligned_cols=302 Identities=10% Similarity=0.026 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHcCCC-CCCc-cEEEeCCHHHHHHHHHhhCCCCCC-----CeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 171 LESAMKKRIMDFLNIS-ENDY-GMVFTANRTSAFKLLAESYPFMSV-----KNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~-~~ey-~vvft~naT~al~lv~~sl~~~~g-----d~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
+.+.+.+.+.+.+|.+ .+.. .|+||+|+|+|+.+++.++ .++| |+|++. ..|++ ....++..|+++
T Consensus 71 lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~-~~~g~~~~~d~vl~~~p~~~~-----~~~~~~~~g~~~ 144 (396)
T 3jtx_A 71 LRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTV-LNPVSDGIKPAIVSPNPFYQI-----YEGATLLGGGEI 144 (396)
T ss_dssp HHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHH-CCC---CCCCEEEEEESCCHH-----HHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHH-hCCCCccCCCEEEEcCCCcHh-----HHHHHHHcCCEE
Confidence 3344444444445753 1222 6999999999999999998 5676 677654 45543 234567789999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCCC--
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKDM-- 316 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~m-- 316 (632)
+.++.+.....+|.++|++++.++ +++++++..+|+||..+|.+ |+++|+++|+++++|.++.....-
T Consensus 145 ~~v~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~ 218 (396)
T 3jtx_A 145 HFANCPAPSFNPDWRSISEEVWKR------TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN 218 (396)
T ss_dssp EEEECCTTTCCCCGGGSCHHHHHT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC
T ss_pred EEeecCCCCCccCHHHHHHhhccC------cEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence 999986444467889999988764 48999999999999999865 567789999999999997752100
Q ss_pred CCCCC--------CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 317 DSFGL--------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 317 ~~ldl--------s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
.++.+ ...+.++++.|++|.||.+..++|+++.+++.++.+....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~--------------------------- 271 (396)
T 3jtx_A 219 KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYR--------------------------- 271 (396)
T ss_dssp CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHH---------------------------
T ss_pred CCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHH---------------------------
Confidence 12221 1257789999999988842223687776655544332100
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
.. .. ++.+.+...++. .+|+. ...++.+.+
T Consensus 272 -----~~---~~----------------~~~~~~~~~a~~------------------------~~l~~--~~~~~~~~~ 301 (396)
T 3jtx_A 272 -----TY---HG----------------SAMSIPVQRASI------------------------AAWDD--EQHVIDNRR 301 (396)
T ss_dssp -----HH---HT----------------CCCCHHHHHHHH------------------------HHHHC--CHHHHHHHH
T ss_pred -----hh---cc----------------cCCCHHHHHHHH------------------------HHhCC--HHHHHHHHH
Confidence 00 00 011112222221 34432 123677788
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHH-HHHHHHHhCCcEEccCccCChH
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~-~V~kla~~~gI~lr~G~~c~~~ 547 (632)
+.+...+++.+.|.++ +.++.| ..+..+.+.+.+ .+.. .+++|++++||.++.|..|...
T Consensus 302 ~~~~~~~~l~~~l~~~----------~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~ 362 (396)
T 3jtx_A 302 LYQEKFERVIPILQQV----------FDVKLP----DASFYIWLKVPD-----GDDLAFARNLWQKAAIQVLPGRFLARD 362 (396)
T ss_dssp HHHHHHHHHHHHHTTT----------SCCCCC----SSSSEEEEECTT-----SCHHHHHHHHHHHHCEECEEGGGGCCC
T ss_pred HHHHHHHHHHHHHHhc----------CCccCC----CeeEEEEEECCC-----CCHHHHHHHHHHHCCEEEeCChHhCCc
Confidence 8888888888888764 112222 234556666654 3444 4456667889999988766542
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
.. ....+.+.||+|++. +.+||+++++.|++++
T Consensus 363 ~~----------------------------~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 363 TE----------------------------QGNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp CT----------------------------TCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred cc----------------------------ccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 10 011245799999986 9999999999998875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-18 Score=185.29 Aligned_cols=297 Identities=14% Similarity=0.109 Sum_probs=192.3
Q ss_pred HHHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCE------
Q 006746 173 SAMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGAR------ 241 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~------ 241 (632)
.+.|++|++++ +++++ .|+||+|+++++.++ .++ +++||+|++. ..|++ . ...++..|++
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~--~i~~t~G~~~al~~~-~~l-~~~gd~Vl~~~p~~~~-~----~~~~~~~g~~g~~~~~ 184 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAAD--EIFISDGSKCDIARI-QMM-FGSKPTVAVQDPSYPV-Y----VDTSVMMGMTGDHNGT 184 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGG--GEEEESCHHHHHHHH-HHH-HCSSSCEEEEESCCTH-H----HHHHHHHTCSCCBCSS
T ss_pred HHHHHHHHHHHHcCCCCCHH--HEEEccCHHHHHHHH-HHH-hCCCCEEEEcCCCChh-H----HHHHHHcCCccccccc
Confidence 47899999998 67655 899999999999998 666 6889997654 45654 2 2345667888
Q ss_pred ----EEEEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC
Q 006746 242 ----VMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 242 ----v~~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~ 312 (632)
++.++.+.. ....+.+++ .+++++++...+|+||..+| ++ |+++|+++|+++++|.++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~ 253 (449)
T 3qgu_A 185 GFDGIEYMVCNPDNHFFPDLSKA-----------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYAL 253 (449)
T ss_dssp SBTTEEEEECCGGGTTCCCGGGC-----------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred ccceeEEEecccccCCcCChhHc-----------CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHh
Confidence 999988633 222222111 24589999999999999998 55 67789999999999998775
Q ss_pred ----CCCCCCCCCCC----CCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCC
Q 006746 313 ----PKDMDSFGLSL----VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC 384 (632)
Q Consensus 313 ----g~~m~~ldls~----~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~ 384 (632)
+. .+..+.. .+.++++.|++|.||.+...+|+++++++.++...... ...|.
T Consensus 254 ~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~-----------~~~~~------- 313 (449)
T 3qgu_A 254 YISNPD--CPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPV-----------HADWN------- 313 (449)
T ss_dssp GCCCTT--SCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBH-----------HHHHH-------
T ss_pred hhcCCC--CCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhH-----------HHHHH-------
Confidence 22 1222221 35679999999999842334899999887754200000 00000
Q ss_pred CCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHH
Q 006746 385 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 464 (632)
Q Consensus 385 ~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~ 464 (632)
.. ...+ + .+.+.+...+.. .+|+......++
T Consensus 314 ---------~~---~~~~--~-----------~~~~~~~~~a~~------------------------~~l~~~~~~~~~ 344 (449)
T 3qgu_A 314 ---------RV---MTTC--F-----------NGASNIVQAGGL------------------------ACLQPEGLKEMN 344 (449)
T ss_dssp ---------HH---HHHS--C-----------CCCCHHHHHHHH------------------------HHTSHHHHHHHH
T ss_pred ---------HH---hhcc--c-----------CCCCHHHHHHHH------------------------HHHhhcCHHHHH
Confidence 00 0000 0 011111112111 333321112367
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHH-HHHHHHHhCCcEEccCcc
Q 006746 465 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSL 543 (632)
Q Consensus 465 ~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~-~V~kla~~~gI~lr~G~~ 543 (632)
.+.++.+.+.++|++.|.++ | +++++|. .+..+.+.+.+ ++.. .+++|++++||.++.|..
T Consensus 345 ~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~-----~~~~~~~~~l~~~~gI~v~pg~~ 406 (449)
T 3qgu_A 345 AMIKFYKENAQILKTTFTEM------G---FSVYGGD----DAPYIWVGFPG-----KPSWDVFAEILERCNIVTTPGSG 406 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------T---CCEEESS----SSSEEEEECTT-----SCHHHHHHHHHHHHCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHC------C---CeeeCCC----CeeEEEEECCC-----CCHHHHHHHHHHHCCEEEecchH
Confidence 77888999999999999987 4 3445442 46666666652 3444 455777778999988755
Q ss_pred CChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 544 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 544 c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|.+ .+.+.||+|+ .++.+||+++++.|+++++.
T Consensus 407 f~~----------------------------------~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 407 YGP----------------------------------AGEGFVRASA--FGSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp GCG----------------------------------GGTTEEEEEC--CSCHHHHHHHHHHHHHHHC-
T ss_pred hCC----------------------------------CCCCeEEEEe--cCCHHHHHHHHHHHHHHHHh
Confidence 432 1346999994 56999999999999998765
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=189.51 Aligned_cols=303 Identities=10% Similarity=0.080 Sum_probs=199.6
Q ss_pred HHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 174 AMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+.|+.|++++ |.+.+...|++|+|+|+|+.+++.++ .++||+|++. ..|++ . ...++..|++++.++.+
T Consensus 99 ~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~-~----~~~~~~~g~~~~~v~~~ 172 (447)
T 3b46_A 99 SLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGL-LNAGDEVIVFEPFFDQ-Y----IPNIELCGGKVVYVPIN 172 (447)
T ss_dssp HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-H----HHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchh-H----HHHHHHcCCEEEEEeCC
Confidence 5666666665 54322227999999999999999998 6889997654 45553 2 23456789999999986
Q ss_pred CC-----------ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCC
Q 006746 249 WP-----------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGP 313 (632)
Q Consensus 249 ~~-----------~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g 313 (632)
.. +..+++++|+++|.+ +++++++++.+|+||..+| ++ |+++|+++|+++++|.++...
T Consensus 173 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 246 (447)
T 3b46_A 173 PPKELDQRNTRGEEWTIDFEQFEKAITS------KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHL 246 (447)
T ss_dssp CCGGGGTSCBCSTTSEECHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred CccccccccccccCcccCHHHHHHhhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhc
Confidence 33 346899999888764 3589999999999999985 67 889999999999999987652
Q ss_pred C---CCCCC-CC--CCCCCcEEEEccccccCCCCCc--eEEEEE-eCCCccccCCCCCCCceeecccccccccccccCCC
Q 006746 314 K---DMDSF-GL--SLVRPDFLICSFYQIFGENPSG--FGCLFV-KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC 384 (632)
Q Consensus 314 ~---~m~~l-dl--s~~~~Df~~~S~hK~~G~~P~G--~G~L~V-r~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~ 384 (632)
. ...++ .+ ..++.|+++.|++|.|| ++| +|++++ ++++++.+....
T Consensus 247 ~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~--~~G~riG~~~~~~~~l~~~l~~~~----------------------- 301 (447)
T 3b46_A 247 YFTDSFTRIATLSPEIGQLTLTVGSAGKSFA--ATGWRIGWVLSLNAELLSYAAKAH----------------------- 301 (447)
T ss_dssp BCSSCCCCGGGSCHHHHTTEEEEEEHHHHTT--CTTSCCEEEECSCHHHHHHHHHHH-----------------------
T ss_pred ccCCCCcCHHHcCCCCCCcEEEEecCchhcC--CcchhhEEEEeCCHHHHHHHHHHH-----------------------
Confidence 1 00111 12 13478999999999998 447 899998 665544332100
Q ss_pred CCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC-H
Q 006746 385 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-L 463 (632)
Q Consensus 385 ~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G-l 463 (632)
.. . .+ +.+.+...++. ++|+.....+ +
T Consensus 302 ---------~~---~----~~------------~~~~~~~~a~~------------------------~aL~~~~~~~~~ 329 (447)
T 3b46_A 302 ---------TR---I----CF------------ASPSPLQEACA------------------------NSINDALKIGYF 329 (447)
T ss_dssp ---------HH---H----TS------------SCCHHHHHHHH------------------------HHHHHHHHHTHH
T ss_pred ---------hh---c----cC------------CCChHHHHHHH------------------------HHHhCCcchHHH
Confidence 00 0 00 01111222222 5666543223 6
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC---C--------CccCH-HHHHHHH
Q 006746 464 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK---R--------EKIEP-VLVQKLA 531 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~---G--------~~i~~-~~V~kla 531 (632)
+.+.++.+.+.++|.+.|.++ |. +++.|. .+..+.+.+.+.. + ...+. +.+++++
T Consensus 330 ~~~~~~~~~~~~~l~~~L~~~------g~---~~~~~~----~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
T 3b46_A 330 EKMRQEYINKFKIFTSIFDEL------GL---PYTAPE----GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLI 396 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------TC---CEECCS----BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC------CC---eecCCC----eeEEEEEecccccCccccccccccccCCCHHHHHHHHH
Confidence 788899999999999999987 43 344442 3445556664310 0 01223 4445677
Q ss_pred HhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 532 DRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 532 ~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
+++||.++.|..+..... ...+.+.||+|++. +.|||+..++.|+++
T Consensus 397 ~~~gV~v~pg~~f~~~~~-----------------------------~~~~~~~iRls~~~--~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 397 NELGVVAIPPTEFYIKEH-----------------------------EKAAENLLRFAVCK--DDAYLENAVERLKLL 443 (447)
T ss_dssp HHTCEECBCGGGGSCGGG-----------------------------GGGGTTEEEEECCS--CHHHHHHHHHHGGGG
T ss_pred HhCCEEEECchHhCCCCc-----------------------------cCCCCCEEEEEEeC--CHHHHHHHHHHHHHH
Confidence 789999987643321100 00124699999984 899999999988875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=180.47 Aligned_cols=342 Identities=10% Similarity=0.053 Sum_probs=213.5
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|+|.++ .|+.++.+++++.+.+... .+... .|+ ......+.|+.|+
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~--------------------~~~~~--~~~--~~~~~~~l~~~la 94 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL--------------------SHTCF--QVL--AYEPYLELCEIMN 94 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC--------------------SCCCT--TTE--ECHHHHHHHHHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC--------------------CCccc--ccc--CCHHHHHHHHHHH
Confidence 4567888753 3556788888877654321 00000 011 2355678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHh---hCCCCCCCeEE-EeccccchhhHHHHHHHHhcCC-------------EEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAE---SYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGA-------------RVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~---sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~-------------~v~ 243 (632)
++++.+. ...|+||+|+|+|+.+++. .+ ..+| +|+ ....||.....++. ..|. .++
T Consensus 95 ~~~~~~~-~~~v~~~~g~~~a~~~~~~~a~~~-~~~~-~vi~~~p~y~~~~~~~~~----~~g~~~~~~~~~~~~~~~v~ 167 (426)
T 1sff_A 95 QKVPGDF-AKKTLLVTTGSEAVENAVKIARAA-TKRS-GTIAFSGAYHGRTHYTLA----LTGKVNPYSAGMGLMPGHVY 167 (426)
T ss_dssp HHSSCSS-CEEEEEESSHHHHHHHHHHHHHHH-HTCC-EEEEETTCCCCSSHHHHH----HSSCCTTTTTTSCCCCSSEE
T ss_pred HhCCccc-ccEEEEeCchHHHHHHHHHHHHHh-hCCC-eEEEECCCcCCCchHhhh----hcCCccccccccCCCCCCcE
Confidence 9994232 1379999999999999987 54 2445 655 44567753333322 2232 267
Q ss_pred EEeccC----CccccCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccc----hH-HHHHHhhCCcEEEEecccc-C
Q 006746 244 SAEFSW----PRLRINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP----YL-WMRIAQENDWHILIDACAL-G 312 (632)
Q Consensus 244 ~v~~~~----~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~ 312 (632)
.++++. ..+.+++++|+++|++.. ...++++|++.. .+| ||...| ++ |.++|+++|+++++|.++. +
T Consensus 168 ~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 245 (426)
T 1sff_A 168 RALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA 245 (426)
T ss_dssp EECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred EeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhcc
Confidence 777752 123468899999987410 012467887754 456 998888 88 9999999999999999987 2
Q ss_pred CCC--CCCCCCCCCCCcEEEEccccccCCCCCc--eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 313 PKD--MDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 313 g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
+.. +..++.....+|++ |+.|.+| + | +|+++++++.++.+.+...+++ |
T Consensus 246 ~~~g~~~~~~~~~~~~di~--s~sK~~~--~-GlriG~~~~~~~~~~~l~~~~~~~~----------~------------ 298 (426)
T 1sff_A 246 GRTGTLFAMEQMGVAPDLT--TFAKSIA--G-GFPLAGVTGRAEVMDAVAPGGLGGT----------Y------------ 298 (426)
T ss_dssp TTTSSSSGGGGTTSCCSEE--EECGGGG--T-SSCCEEEEEEHHHHTTSCTTSBCCS----------S------------
T ss_pred CcccchhhhhhcCCCCCEE--EEccccc--C-CCceEEEEEcHHHHhhhccCCcCcC----------C------------
Confidence 221 11223323357876 6679999 6 7 5999999877665543111000 0
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
. .+.....++. ++|+.+.+. .+.+
T Consensus 299 -----------------~------------~~~~~~~a~~------------------------aal~~~~~~---~~~~ 322 (426)
T 1sff_A 299 -----------------A------------GNPIACVAAL------------------------EVLKVFEQE---NLLQ 322 (426)
T ss_dssp -----------------S------------SCHHHHHHHH------------------------HHHHHHHHT---THHH
T ss_pred -----------------C------------CCHHHHHHHH------------------------HHHHHHHhc---CHHH
Confidence 0 0111112222 677777652 4668
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC----CCccCHHHHHHHHHhCCcEEccCccC
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK----REKIEPVLVQKLADRENISLSYGSLH 544 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~----G~~i~~~~V~kla~~~gI~lr~G~~c 544 (632)
|++.+.+++++.|.++.. ..+.+..+. ..|.++.+.+.+.. ...++...+.+.+.++||.++.|..
T Consensus 323 ~~~~~~~~l~~~l~~~~~----~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~- 392 (426)
T 1sff_A 323 KANDLGQKLKDGLLAIAE----KHPEIGDVR-----GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP- 392 (426)
T ss_dssp HHHHHHHHHHHHHHHHHH----TCTTEEEEE-----EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-
T ss_pred HHHHHHHHHHHHHHHHHH----hCCCeEEEE-----EEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-
Confidence 888999999999987620 024443221 13788888885311 0012344555545567999875420
Q ss_pred ChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 545 HIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
..+.||+|+++.++.+||+++++.|+++++
T Consensus 393 -------------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 422 (426)
T 1sff_A 393 -------------------------------------YYNVLRILVPLTIEDAQIRQGLEIISQCFD 422 (426)
T ss_dssp -------------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 135899999999999999999999998875
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=180.61 Aligned_cols=168 Identities=11% Similarity=0.058 Sum_probs=134.7
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+.......++.++++++++|.+ .+++++|+++|+.+++.++ .++||+|++. ..|++ ....+...+++.|+++
T Consensus 75 y~r~~~p~~~~l~~~la~~~g~~----~~~~~~sG~~Ai~~al~~l-~~~Gd~Vi~~~~~y~~-~~~~~~~~~~~~g~~~ 148 (414)
T 3ndn_A 75 YSRYGNPTVSVFEERLRLIEGAP----AAFATASGMAAVFTSLGAL-LGAGDRLVAARSLFGS-CFVVCSEILPRWGVQT 148 (414)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEESCCCHH-HHHHHHTHHHHTTCEE
T ss_pred cCCCCChHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCccch-HHHHHHHHHHHcCcEE
Confidence 33333466789999999999974 5789999999999999998 7899997754 46664 3444445567799999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++.+ |+++|+++|+++ +++|.+...+|+||...|++ |.++|+++|+++++|.++..|....++
T Consensus 149 ~~v~~~------d~~~l~~ai~~~------t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-- 214 (414)
T 3ndn_A 149 VFVDGD------DLSQWERALSVP------TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF-- 214 (414)
T ss_dssp EEECTT------CHHHHHHHTSSC------CSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG--
T ss_pred EEeCCC------CHHHHHHhcCCC------CeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch--
Confidence 999864 788999988764 48999999999999999999 999999999999999998765311233
Q ss_pred CCCCCcEEEEccccccCCCCCc---eEEEEEeCCCc
Q 006746 322 SLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTV 354 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G---~G~L~Vr~~~~ 354 (632)
.+++|+++.|++|++| +.| .|+++.+++.+
T Consensus 215 -~~g~div~~S~sK~l~--~~G~~~~G~vv~~~~~~ 247 (414)
T 3ndn_A 215 -PLGVDVVVYSGTKHID--GQGRVLGGAILGDREYI 247 (414)
T ss_dssp -GGTCSEEEEETTTTTT--CSSCCCCEEEEECHHHH
T ss_pred -hcCCCeEeccCCcccc--CCCCceEEEEEECHHHH
Confidence 4578999999999998 557 69988877654
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-18 Score=186.46 Aligned_cols=353 Identities=11% Similarity=0.038 Sum_probs=218.2
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHH-HHHHHHHHcCCCCCCccE
Q 006746 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA-MKKRIMDFLNISENDYGM 192 (632)
Q Consensus 114 ~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~-~R~~ia~~l~a~~~ey~v 192 (632)
.++-.++++.+++++...+... |..+++.+.+..|....+.+++ +|+++++++|++. ..
T Consensus 51 ~~~~~~~~~~v~~a~~~~~~~~-----------------~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~---~~ 110 (447)
T 3h7f_A 51 IASENFVPRAVLQAQGSVLTNK-----------------YAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF---AN 110 (447)
T ss_dssp CTTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE---EE
T ss_pred ecCCCCCCHHHHHHHHHHhcCC-----------------ccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc---eE
Confidence 3455677999999987654210 1124555544334333333344 4499999999973 34
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHH-HHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCC
Q 006746 193 VFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAM-IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK 270 (632)
Q Consensus 193 vft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~-~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~ 270 (632)
+++.|+|+|+..++.++ .++||+|++. ..|++....+. ... ...+..+..++++..++.+|.++|++++.+.+
T Consensus 111 v~~~sGs~a~~~a~~~~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--- 185 (447)
T 3h7f_A 111 VQPHSGAQANAAVLHAL-MSPGERLLGLDLANGGHLTHGMRLNF-SGKLYENGFYGVDPATHLIDMDAVRATALEFR--- 185 (447)
T ss_dssp CCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSH-HHHSSEEEEECCCTTTCSCCHHHHHHHHHHHC---
T ss_pred EEeCCHHHHHHHHHHHh-cCCCCEEEecCcccccccchhhhhhh-cCCeeEEEEcCcCcccCCcCHHHHHHHHHhcC---
Confidence 54788899999999988 7899997754 45543111111 011 12356777777765567799999999996532
Q ss_pred CceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC--CCCCCCCCCCcEEEEccccccCCCCCceEEE
Q 006746 271 KQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM--DSFGLSLVRPDFLICSFYQIFGENPSGFGCL 347 (632)
Q Consensus 271 ~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m--~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L 347 (632)
++++++....|.++. |++ |.++|+++|+++++|.+|+.|... ...+. ...+|++++|+||.+|. |.| |++
T Consensus 186 --~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~~~di~~~s~sK~l~G-~~g-G~i 258 (447)
T 3h7f_A 186 --PKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VPHADVVSTTVHKTLGG-GRS-GLI 258 (447)
T ss_dssp --CSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEEEESSGGGCC-CSC-EEE
T ss_pred --CeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CCCCcEEEecCCcCCCC-CCe-EEE
Confidence 478888777676665 999 999999999999999998653100 01111 12579999999997765 877 999
Q ss_pred EEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHh
Q 006746 348 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV 427 (632)
Q Consensus 348 ~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l 427 (632)
+.+++.++.+.+.... ++ .|+++.+.+.++
T Consensus 259 ~~~~~~~~~l~~~~~~-------------------------------------~~-------------~~~~~~~~~~a~ 288 (447)
T 3h7f_A 259 VGKQQYAKAINSAVFP-------------------------------------GQ-------------QGGPLMHVIAGK 288 (447)
T ss_dssp EECGGGHHHHHHHHTT-------------------------------------TT-------------CSSCCHHHHHHH
T ss_pred EECHHHHHHHhhhcCC-------------------------------------cc-------------cCCccHHHHHHH
Confidence 8887665444321100 00 122223333444
Q ss_pred hhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCC
Q 006746 428 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG 507 (632)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg 507 (632)
. .++..+...+++...++++...++|.+.|.++... .+.++++.+. ..+
T Consensus 289 ~------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~----~~g~~~~~~~---~~~ 337 (447)
T 3h7f_A 289 A------------------------VALKIAATPEFADRQRRTLSGARIIADRLMAPDVA----KAGVSVVSGG---TDV 337 (447)
T ss_dssp H------------------------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHH----HTTCEEGGGS---CSS
T ss_pred H------------------------HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEecCC---CCC
Confidence 3 45554433356777888888888888888764000 0234554321 234
Q ss_pred cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEE
Q 006746 508 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT 587 (632)
Q Consensus 508 ~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VR 587 (632)
..+.+.+.+ ..++...+.+++++.||.++.... ++. .. .....+.||
T Consensus 338 ~~~~~~~~~---~~~~~~~~~~~l~~~GI~v~~~~i--~~~--~~--------------------------~p~~~~~lR 384 (447)
T 3h7f_A 338 HLVLVDLRD---SPLDGQAAEDLLHEVGITVNRNAV--PND--PR--------------------------PPMVTSGLR 384 (447)
T ss_dssp SEEEEECTT---SSCCHHHHHHHHHHTTEECBC-------------------------------------------CEEE
T ss_pred CEEEEEcCC---CCCCHHHHHHHHHHCCeEEecccC--CCC--CC--------------------------CCCCCCcee
Confidence 455555543 125778888999989999873210 000 00 011235799
Q ss_pred EccCCC----CCHHHHHHHHHHHHHhhhh
Q 006746 588 ASLGYL----ANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 588 vSlg~~----~t~eDV~rlv~~l~~~l~~ 612 (632)
+++... .+.+||+++++.|++.|+.
T Consensus 385 ig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 385 IGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp EECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred ccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 998777 4689999999999998765
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-17 Score=178.03 Aligned_cols=313 Identities=14% Similarity=0.072 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHcCCCCCC-------ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCE
Q 006746 170 GLESAMKKRIMDFLNISEND-------YGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~e-------y~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~ 241 (632)
++.+.+.+.+.+..|.+.++ ..|++|+|+++|+.+++.++ .++||+|++.. .|++ ....++..|++
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~-----~~~~~~~~g~~ 155 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI-INPGDNVLLDEPAYSG-----TLQSLHPLGCN 155 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCHH-----HHHHHGGGTCE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh-CCCCCEEEEeCCCcHH-----HHHHHHHcCCE
Confidence 34444555555556876421 37999999999999999998 68899977543 4543 24456778999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCc------CCCceeEEEE-eccCCCCccccchH----HHHHHhhCCcEEEEeccc
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGK------KKKQRGLFVF-PLHSRMTGARYPYL----WMRIAQENDWHILIDACA 310 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~------~~~~~~Lv~~-~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq 310 (632)
++.++.+ +++ +++++|+++++.... ...+++++.+ +..+|+||..+|.+ |+++|+++|+++++|.++
T Consensus 156 ~~~v~~~-~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~ 233 (425)
T 2r2n_A 156 IINVASD-ESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY 233 (425)
T ss_dssp EEEECEE-TTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEeCcC-CCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 9999987 343 899999999973110 0124577755 89999999999854 678899999999999987
Q ss_pred cC----CCCCCC-CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCC
Q 006746 311 LG----PKDMDS-FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCE 385 (632)
Q Consensus 311 ~~----g~~m~~-ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~ 385 (632)
.. +....+ ..+...+.++++.|++|.|| +...+|++++++++++.+......
T Consensus 234 ~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~---------------------- 290 (425)
T 2r2n_A 234 YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQV---------------------- 290 (425)
T ss_dssp GGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHT----------------------
T ss_pred ccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHH----------------------
Confidence 52 321011 12222345799999999998 312379999988765544321000
Q ss_pred CCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh----h
Q 006746 386 TEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS----L 461 (632)
Q Consensus 386 ~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~----~ 461 (632)
.. .+.+.+...++. ++|+.+.. .
T Consensus 291 -------------~~----------------~~~~~~~q~a~~------------------------~~l~~~~~~~~~~ 317 (425)
T 2r2n_A 291 -------------ST----------------LHPSTFNQLMIS------------------------QLLHEWGEEGFMA 317 (425)
T ss_dssp -------------TT----------------CSSCHHHHHHHH------------------------HHHHHHHHHHHHH
T ss_pred -------------hc----------------CCCCHHHHHHHH------------------------HHHHhcccchHHH
Confidence 00 001111111121 44443211 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccCCCCccCH-HHHHHHHHhCCcEEc
Q 006746 462 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLS 539 (632)
Q Consensus 462 Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~~G~~i~~-~~V~kla~~~gI~lr 539 (632)
-++.+.++.+...++|.+.|.++ .|.+ .+..| ..|..+.+.+.+. .+. +.+.+++.++||.++
T Consensus 318 ~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~p----~~g~~~~~~~~~~----~~~~~~~~~~l~~~gv~v~ 382 (425)
T 2r2n_A 318 HVDRVIDFYSNQKDAILAAADKW-------LTGLAEWHVP----AAGMFLWIKVKGI----NDVKELIEEKAVKMGVLML 382 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------CSSSEEECCC----SBSSEEEEEETTC----SCCHHHHHTHHHHTTEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------CCCCeEEeCC----CceEEEEEEeCCC----CCHHHHHHHHHHHCCcEEe
Confidence 25666777788888888888874 1333 44444 2355666666542 233 435667778999998
Q ss_pred cCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 540 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 540 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
.|..|... ...+.+.||+|++. .+.+|++++++.|++++...
T Consensus 383 pg~~f~~~-------------------------------~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 383 PGNAFYVD-------------------------------SSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp EGGGGSSS-------------------------------TTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCC-------------------------------CCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 77544321 01134689999985 59999999999999987653
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=179.91 Aligned_cols=300 Identities=13% Similarity=0.117 Sum_probs=196.1
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHH--HHHhhCCCC--C---------CCeEEEe-ccccchhhHHHHHHHHhc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFK--LLAESYPFM--S---------VKNLLTV-YDYESEAVEAMIRTSEKR 238 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~--lv~~sl~~~--~---------gd~ilt~-~d~~s~~v~~~~~~a~~~ 238 (632)
.+.|+.|+++++++++ .|++|+|+|+++. +++.++- . + ||+|++. ..|+. ....++..
T Consensus 73 ~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~gd~Vlv~~p~y~~-----~~~~~~~~ 144 (423)
T 3ez1_A 73 PSARALFAGYLDVKAE--NVLVWNNSSLELQGLVLTFALL-HGVRGSTGPWLSQTPKMIVTVPGYDR-----HFLLLQTL 144 (423)
T ss_dssp HHHHHHHHHHTTSCGG--GEEECSSCHHHHHHHHHHHHHH-TCCTTCSSCGGGGCCEEEEEESCCHH-----HHHHHHHH
T ss_pred HHHHHHHHHHhCCChh--hEEEeCCcHHHHHHHHHHHHHh-ccCCCccccccCCCCEEEEcCCCcHH-----HHHHHHHc
Confidence 4799999999999876 7999999999998 8888762 3 5 5887654 45543 23445678
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEE-EeccCCCCccccchH-H---HHHH-hhCCcEEEEeccccC
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYL-W---MRIA-QENDWHILIDACALG 312 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~-~~~~sn~TG~~~pl~-i---~~~a-~~~g~~vlvDaaq~~ 312 (632)
|++++.++.+ +++ +++++|++++.+. +++++|. .+..+|+||..+|.+ + +++| +++|+++++|.++..
T Consensus 145 g~~~~~v~~~-~~g-~d~~~l~~~l~~~----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~ 218 (423)
T 3ez1_A 145 GFELLTVDMQ-SDG-PDVDAVERLAGTD----PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV 218 (423)
T ss_dssp TCEEEEEEEE-TTE-ECHHHHHHHHHSC----TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSS
T ss_pred CCEEEeccCC-CCC-CCHHHHHHHHhhC----CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcch
Confidence 9999999997 344 8999999999621 2357775 568999999999986 4 4566 889999999998763
Q ss_pred CC----CC-CCCCC-------CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccc
Q 006746 313 PK----DM-DSFGL-------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDE 380 (632)
Q Consensus 313 g~----~m-~~ldl-------s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~ 380 (632)
.. .. ...++ ...+.++++.|++|.++ +..++|+++.+++.++.+....... .|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~----------~~---- 283 (423)
T 3ez1_A 219 HHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF-AGAGLGFVASSEDNIRWLSKYLGAQ----------SI---- 283 (423)
T ss_dssp CBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSC-SSSSCEEEEECHHHHHHHHHHHHHS----------CS----
T ss_pred hhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhcc-CCcceEEEEeCHHHHHHHHHHHhhh----------cc----
Confidence 11 00 01111 13456799999999633 2567899988876655443210000 00
Q ss_pred cCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH----
Q 006746 381 FSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD---- 456 (632)
Q Consensus 381 ~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd---- 456 (632)
++ +.+...++. .+|+
T Consensus 284 --------------------~~-----------------~~~~~~a~~------------------------~~l~~~~~ 302 (423)
T 3ez1_A 284 --------------------GP-----------------NKVEQARHV------------------------KFLTEYPG 302 (423)
T ss_dssp --------------------CC-----------------CHHHHHHHH------------------------HHHHHSTT
T ss_pred --------------------CC-----------------CHHHHHHHH------------------------HHHHhccc
Confidence 00 000000000 1111
Q ss_pred ----HHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC-cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHH
Q 006746 457 ----QVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA-LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLA 531 (632)
Q Consensus 457 ----~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p-~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla 531 (632)
++.+. .+.+.+|...|.+.|.+.|..+ + .+++..|. .+..+.+.+.+ .+...+.+++
T Consensus 303 ~~~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~--------~~~~~~~~p~----~g~~~~~~~~~-----~~~~~~~~~l 364 (423)
T 3ez1_A 303 GLEGLMRDH-AAIIAPKFRAVDEVLRAELGEG--------GEYATWTLPK----GGYFISLDTAE-----PVADRVVKLA 364 (423)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTT--------TSSEEECCCS----BSSCEEEEESS-----SCHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcC--------CCceEEeCCC----ccEEEEEECCC-----CcHHHHHHHH
Confidence 12111 2344455555666666666554 3 46666552 45567777765 2567788888
Q ss_pred HhCCcEEcc-CccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 532 DRENISLSY-GSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 532 ~~~gI~lr~-G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
.++||.++. |.+|..+ .....+.||+|++.. +.+||+++++.|++++
T Consensus 365 ~~~gv~v~~~g~~~~~~-------------------------------~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 365 EAAGVSLTPAGATYPAG-------------------------------QDPHNRNLRLAPTRP-PVEEVRTAMQVVAACI 412 (423)
T ss_dssp HHTTEECCCTTTTSSTT-------------------------------CCSSSCEEEECCSSS-CHHHHHHHHHHHHHHH
T ss_pred HHCCcEEecCcccccCC-------------------------------CCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHH
Confidence 889999987 5544321 012357999999877 9999999999999988
Q ss_pred hh
Q 006746 611 DA 612 (632)
Q Consensus 611 ~~ 612 (632)
..
T Consensus 413 ~~ 414 (423)
T 3ez1_A 413 RL 414 (423)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=180.62 Aligned_cols=307 Identities=12% Similarity=0.089 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC-----eEEEe--ccccchhhHHHHHH--HH
Q 006746 172 ESAMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVK-----NLLTV--YDYESEAVEAMIRT--SE 236 (632)
Q Consensus 172 ~~~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd-----~ilt~--~d~~s~~v~~~~~~--a~ 236 (632)
+.+.|+.|++++ +++++ .|+||+|+|+|+++++.++ .++|| +|+++ ..|+. ........ ..
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~vi~~~~p~~~~-~~~~~~~~~~~~ 152 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQ--NIALTNGSQSAFFYLFNLF-AGRRADGSTKKVLFPLAPEYIG-YADSGLEDDLFV 152 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SBC----CCBEEEESSCCCHHH-HHC-----CCEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc--cEEEeCCcHHHHHHHHHHH-cCCCccCCcceEEEeCCCcccc-chhhccchhhhc
Confidence 357888888887 56655 7999999999999999998 56766 77653 34543 21111100 01
Q ss_pred hcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC
Q 006746 237 KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 237 ~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~ 312 (632)
..+..+..++.+.....+|+++|+ +.+ +++++++++.+|+||..+| ++ |+++|+++|+++++|.++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~l~--~~~------~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~ 224 (417)
T 3g7q_A 153 SARPNIELLPEGQFKYHVDFEHLH--IGE------ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGV 224 (417)
T ss_dssp ECCCEEEEEGGGEEEEECCGGGCC--CCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred cccCcccccCCcccccccCHHHhc--ccc------CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcc
Confidence 123444444432112356777776 332 4689999999999999999 77 88899999999999999864
Q ss_pred CCC---CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 313 PKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 313 g~~---m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
+.. ...+.....+.++++.|++| ++.+..++|+++.+++.++.+..... .+
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~~~~~~~~~~~~~~~------------~~------------- 278 (417)
T 3g7q_A 225 PFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGIIIANDKTITAIANMNG------------II------------- 278 (417)
T ss_dssp TTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEECCHHHHHHHHHHHH------------HH-------------
T ss_pred ccccccccccccCCCCCEEEEEechh-ccCCCcceEEEEeCHHHHHHHHHhhc------------ce-------------
Confidence 221 01222223467899999999 46322347888776655443322100 00
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHH-----
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT----- 464 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~----- 464 (632)
.... +.++ .. .+...+....+.
T Consensus 279 ----------~~~~---~~~~-------------~~---------------------------~~~~~l~~~~~~~~~~~ 305 (417)
T 3g7q_A 279 ----------SLAP---GGMG-------------PA---------------------------MMCEMIKRNDLLRLSET 305 (417)
T ss_dssp ----------CCCC---CSHH-------------HH---------------------------HHHHHHHTTCHHHHHHH
T ss_pred ----------eeCC---CcHH-------------HH---------------------------HHHHHHcCcchHHHHHH
Confidence 0000 0000 00 122223222222
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCCC--cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCc
Q 006746 465 MISRRGRCLINWLVNALMKLQHPNTEGNA--LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS 542 (632)
Q Consensus 465 ~I~~r~~~L~~~L~~~L~~l~h~~~~G~p--~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~ 542 (632)
.+.++.+...+.+.+.|.+. .+ .++++.|. .+..+.+.+.+. .++...+.+.+.++||.++.|.
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~-------l~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~~l~~~l~~~gi~v~~g~ 371 (417)
T 3g7q_A 306 VIKPFYYQRVQQTIAIIRRY-------LSEERCLIHKPE----GAIFLWLWFKDL---PITTELLYQRLKARGVLMVPGH 371 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHH-------CCTTTCEEECCC----BSSEEEEECTTC---SSCHHHHHHHHHHTTEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHh-------cccCCceeeCCC----cceEEEEEcCCC---CCCHHHHHHHHHHCCEEEECch
Confidence 14455566666677777652 12 25666653 355666666531 1567777777788999999987
Q ss_pred cCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 543 LHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 543 ~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.|..+.... .....+.||+|++. +.+||+++++.|++.+..
T Consensus 372 ~f~~~~~~~---------------------------~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 372 YFFPGLDKP---------------------------WPHTHQCMRMNYVP--EPDKIEAGVKILAEEIER 412 (417)
T ss_dssp GGCTTBSSC---------------------------CGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHH
T ss_pred hhCCCCccc---------------------------cccCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 766421000 00124699999996 999999999999998764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=179.36 Aligned_cols=307 Identities=12% Similarity=0.077 Sum_probs=194.3
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHH--HHHHhhCCC-CC----------CCeEEEe-ccccchhhHHHHHHHHhc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAF--KLLAESYPF-MS----------VKNLLTV-YDYESEAVEAMIRTSEKR 238 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al--~lv~~sl~~-~~----------gd~ilt~-~d~~s~~v~~~~~~a~~~ 238 (632)
.+.|+.|+++++++++ .|++|+|+++++ ++++.++-- .+ ||+|++. ..|++ ....++..
T Consensus 81 ~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~-----~~~~~~~~ 153 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVE--QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDR-----HFSITERF 153 (427)
T ss_dssp HHHHHHHHHHHTSCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH-----HHHHHHHT
T ss_pred HHHHHHHHHHhCCCcc--eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHH-----HHHHHHHc
Confidence 4799999999999876 799999999999 688877621 13 8887654 34543 23456778
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEE-EeccCCCCccccchH----HHHHH-hhCCcEEEEeccccC
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYL----WMRIA-QENDWHILIDACALG 312 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~-~~~~sn~TG~~~pl~----i~~~a-~~~g~~vlvDaaq~~ 312 (632)
|++++.+|++ +++ +++++|++++.. .+++++. .|+.+|+||..+|.+ |+++| +++|+++++|.++..
T Consensus 154 g~~~~~v~~~-~~g-~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~ 226 (427)
T 3ppl_A 154 GFEMISVPMN-EDG-PDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAV 226 (427)
T ss_dssp TCEEEEEEEE-TTE-ECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTT
T ss_pred CCEEEEeCCC-CCC-CCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcc
Confidence 9999999998 444 999999998842 1357776 568999999999986 45567 889999999998764
Q ss_pred ----CCCCCCCCCC-------CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccccccc
Q 006746 313 ----PKDMDSFGLS-------LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEF 381 (632)
Q Consensus 313 ----g~~m~~ldls-------~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~ 381 (632)
+....++++- ..+.++++.|++|.++ +..++|+++.++++++.+...... ..|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~r~G~~~~~~~l~~~~~~~~~~----------~~~----- 290 (427)
T 3ppl_A 227 HTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHAGI----------RGI----- 290 (427)
T ss_dssp CBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TTSSCEEEECCHHHHHHHHHHHHH----------HCS-----
T ss_pred cccCCCCCCccchhhhhhccCCCCcEEEEechhhccC-cCccEEEEEcCHHHHHHHHHHhhc----------ccC-----
Confidence 1100112221 3456899999999844 245778887776655443221000 000
Q ss_pred CCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchh-hHhhhhhhhhhhhhccCCCCCCCchhhhhHH-HHHH
Q 006746 382 SSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI-SEVRRAEADSIQQKNANTNGGGGSEIECRGL-DQVD 459 (632)
Q Consensus 382 ~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aL-d~~~ 459 (632)
++..+. ...+ ..+.. ...+ +++.
T Consensus 291 -------------------~~~~~~--------------q~~~~~~l~~----------------------~~~~~~~~~ 315 (427)
T 3ppl_A 291 -------------------GPNKVN--------------QLAHARYFGD----------------------AEGVRAVMR 315 (427)
T ss_dssp -------------------CCCHHH--------------HHHHHHHHCS----------------------HHHHHHHHH
T ss_pred -------------------CCCHHH--------------HHHHHHHHhC----------------------hhhHHHHHH
Confidence 000000 0000 01100 0011 1222
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEc
Q 006746 460 SLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS 539 (632)
Q Consensus 460 ~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr 539 (632)
+. .+.+.+|...|.+.|.+.|..+ +.+++..|. .+..+.+.+.+ .+...+.+++.++||.++
T Consensus 316 ~~-~~~~~~~~~~l~~~L~~~l~~~--------~~~~~~~p~----~g~~~~~~~~~-----~~~~~~~~~l~~~gv~v~ 377 (427)
T 3ppl_A 316 KH-AASLAPKFNKVLEILDSRLAEY--------GVAQWTVPA----GGYFISLDVVP-----GTASRVAELAKEAGIALT 377 (427)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHGGG--------TCCEECCCS----BSSCEEEECST-----TCHHHHHHHHHHTTEECC
T ss_pred HH-HHHHHHHHHHHHHHHHHhcCCC--------CceEEeCCC----ccEEEEEECCc-----chHHHHHHHHHHCCCEEe
Confidence 21 3444555556666666655544 235555552 35666777665 246677777888999999
Q ss_pred cCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhhc
Q 006746 540 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 613 (632)
Q Consensus 540 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~~ 613 (632)
.|..|-... .....+.||+|++.. +.+||+++++.|++++..-
T Consensus 378 ~~g~~~~~~------------------------------~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 378 GAGSSYPLR------------------------------QDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp CTTTTSGGG------------------------------CCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCCC------------------------------CCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 854333210 012357999999877 9999999999999987653
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=178.67 Aligned_cols=353 Identities=12% Similarity=0.098 Sum_probs=216.1
Q ss_pred CCceEeecC------CCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYF------GIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~a------g~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|+|.+ ..|+.++.+++++.+.+... + .+. . .+. ..+...+.+++++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--------~-------------~~~-~-~~~-~~~~~~~l~~~la 103 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTL--------D-------------YSP-G-FQY-GHPLSFQLAEKIT 103 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTC--------S-------------CCC-S-SSC-CCHHHHHHHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhC--------C-------------Ccc-c-ccc-CCHHHHHHHHHHH
Confidence 457899985 34555889999987654321 0 000 0 011 2345678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CC------CCCeEEE-eccccchhhHHHHHHH---HhcC-----CEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FM------SVKNLLT-VYDYESEAVEAMIRTS---EKRG-----ARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~------~gd~ilt-~~d~~s~~v~~~~~~a---~~~G-----~~v~~ 244 (632)
++++.+++ .|+||+|+|+|+.+++..+. +. ++++|++ ...||.....++.... .+.+ ..+..
T Consensus 104 ~~~~~~~~--~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~ 181 (449)
T 3a8u_X 104 DLTPGNLN--HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDH 181 (449)
T ss_dssp TTSSTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEE
T ss_pred HhCCCCCC--EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeE
Confidence 99987654 79999999999999988752 11 5678765 5577753333322100 0111 13455
Q ss_pred EeccC--Cc--cccC--------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEe
Q 006746 245 AEFSW--PR--LRIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILID 307 (632)
Q Consensus 245 v~~~~--~~--~~i~--------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvD 307 (632)
++++. .. ..+| +++|+++|++.. ..++++|++..+.+.||.+.| ++ |.++|+++|+++++|
T Consensus 182 v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~D 259 (449)
T 3a8u_X 182 LPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFD 259 (449)
T ss_dssp ECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred ecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEe
Confidence 55431 11 0135 899999997421 124688888888888999999 99 999999999999999
Q ss_pred cccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCc---eEEEEEeCCCccccCCCCCCCceeeccccccccccccc
Q 006746 308 ACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEF 381 (632)
Q Consensus 308 aaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G---~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~ 381 (632)
.++. +|.. +..++.-...+|++ ++.|.+| + | +|++++++++++.+.....+ . .+ .
T Consensus 260 ev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~--~-G~~~~G~~~~~~~~~~~l~~~~~~-------~---~~--~-- 320 (449)
T 3a8u_X 260 EVITGFGRTGSMFGADSFGVTPDLM--CIAKQVT--N-GAIPMGAVIASTEIYQTFMNQPTP-------E---YA--V-- 320 (449)
T ss_dssp CTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--T-TSSCCEEEEEEHHHHHHHHTCSSC-------T---TS--C--
T ss_pred ccccCccccCcchhhhhcCCCCCEE--EEccccc--C-CCCceEEEEECHHHHHHhhccCcc-------c---cc--c--
Confidence 9984 5531 11122222357977 4559888 4 5 89999998776655431100 0 00 0
Q ss_pred CCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh
Q 006746 382 SSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL 461 (632)
Q Consensus 382 ~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~ 461 (632)
.+. ..+| +. .|.....+.. ++|+.+.+.
T Consensus 321 ---~~~-----------~~~t--~~------------~~~~~~aa~~------------------------aal~~~~~~ 348 (449)
T 3a8u_X 321 ---EFP-----------HGYT--YS------------AHPVACAAGL------------------------AALCLLQKE 348 (449)
T ss_dssp ---SSC-----------CCCT--TT------------TCHHHHHHHH------------------------HHHHHHHHT
T ss_pred ---ccc-----------ccCC--Cc------------ccHHHHHHHH------------------------HHHHHHHhc
Confidence 000 0011 10 1112222222 677776652
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCc-cCHHHHHHHHHhCCcEEcc
Q 006746 462 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEPVLVQKLADRENISLSY 540 (632)
Q Consensus 462 Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~-i~~~~V~kla~~~gI~lr~ 540 (632)
.+.+|++.+.+++++.|.++.. .|.+..+ ...|.++.+.+.+..... .++..+.+.+.++||.++.
T Consensus 349 ---~~~~~~~~~~~~l~~~L~~l~~-----~~~~~~~-----~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 415 (449)
T 3a8u_X 349 ---NLVQSVAEVAPHFEKALHGIKG-----AKNVIDI-----RNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRF 415 (449)
T ss_dssp ---THHHHHHHHHHHHHHHHHTTTT-----STTEEEE-----EEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEE
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhc-----CCCeEEE-----eeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEec
Confidence 4678899999999999988621 2444221 125778888886421100 0122344444456888763
Q ss_pred CccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 541 GSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 541 G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
| + +.||+|+++.+|.+||+++++.|++.++.
T Consensus 416 ~----------------------------------------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 416 G----------------------------------------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp E----------------------------------------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred C----------------------------------------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 2 2 58999999999999999999999998754
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-17 Score=180.35 Aligned_cols=315 Identities=11% Similarity=0.042 Sum_probs=195.5
Q ss_pred HHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ | ++++ .|++|+|+|+|+.+++.++-..+||+|++. ..|++ + ...++..|++++.++
T Consensus 138 ~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~----~-~~~~~~~g~~~~~~~ 210 (500)
T 3tcm_A 138 GLRDAIASGIASRDGFPANAD--DIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPL----Y-SASIALHGGALVPYY 210 (500)
T ss_dssp HHHHHHHHHHHHHHSSCCCGG--GEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTH----H-HHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCCcc--cEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHh----H-HHHHHHcCCEEEEEe
Confidence 5666666665 3 4544 799999999999999999844789997754 45553 2 334567899999999
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEeccccCCC-----CC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACALGPK-----DM 316 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq~~g~-----~m 316 (632)
++.. +..+|+++|+++|++......+++++++.+.+|+||..+|.+ | +++|+++|+++++|.+..... ..
T Consensus 211 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~ 290 (500)
T 3tcm_A 211 LNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKF 290 (500)
T ss_dssp CBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCC
T ss_pred cccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCC
Confidence 8743 347899999999986321122468999999999999999866 5 455999999999999865421 00
Q ss_pred CC-------CCCCCCCC-cEEEEcccccc-CCCCCc--eEEEEE---eCCCccccCCCCCCCceeecccccccccccccC
Q 006746 317 DS-------FGLSLVRP-DFLICSFYQIF-GENPSG--FGCLFV---KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 317 ~~-------ldls~~~~-Df~~~S~hK~~-G~~P~G--~G~L~V---r~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
.+ ++....++ .+++.|++|.| | +.| +|++++ ++++++.+......
T Consensus 291 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g--~~G~R~G~~~~~~~~~~~~~~l~~~~~~------------------- 349 (500)
T 3tcm_A 291 HSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG--ECGKRGGYFEITGFSAPVREQIYKIASV------------------- 349 (500)
T ss_dssp CCHHHHHHHTTCSSSCCCEEEEEESSSTTTC--CGGGCCEEEEEESCCTTHHHHHHHHHHT-------------------
T ss_pred CcHHHHHHHhccccCCeEEEEEecCCccCCC--CCccceEEEEEeCCCHHHHHHHHHHHhc-------------------
Confidence 01 11101122 26677999977 7 335 588877 55554433211000
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
. .+++.+....+.. .+ .++ ..+ ....+.+.+ -
T Consensus 350 -----------------~----------------~~~~~~~q~~~~~----~l----~~~-~~~-----~~~~~~~~~-~ 381 (500)
T 3tcm_A 350 -----------------N----------------LCSNITGQILASL----VM----NPP-KAS-----DESYASYKA-E 381 (500)
T ss_dssp -----------------T----------------CCCCHHHHHHHHH----HH----SCC-CSS-----STHHHHHHH-H
T ss_pred -----------------c----------------cCCCHHHHHHHHH----Hh----cCc-ccc-----chhHHHHHH-H
Confidence 0 0001111111110 00 000 000 012222222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEE-EccCCCC-------ccCHH--HHHHHHH
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN-VFDWKRE-------KIEPV--LVQKLAD 532 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFn-v~~~~G~-------~i~~~--~V~kla~ 532 (632)
++.+.++++...++|++.|.++ |.++++.| .++++.|. +..+.+. .+.+. .+.++++
T Consensus 382 ~~~~~~~l~~~~~~l~~~L~~~--------~g~~~~~~-----~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~ 448 (500)
T 3tcm_A 382 KDGILASLARRAKALEHAFNKL--------EGITCNEA-----EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLE 448 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS--------TTEECCCC-----CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--------CCcEEecC-----CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHH
Confidence 5677788888999999999887 66877654 35555442 2211000 01112 2467888
Q ss_pred hCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 533 RENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 533 ~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
++||.+..|..|.. ..+.+.||+|++ ++.+||+++++.|+++++.
T Consensus 449 ~~gI~v~pg~~f~~---------------------------------~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 449 STGIVVVPGSGFGQ---------------------------------VPGTWHFRCTIL--PQEDKIPAVISRFTVFHEA 493 (500)
T ss_dssp HHCEECEESTTTCC---------------------------------CTTCCBEEEESC--SCTTTHHHHHHHHHHHHHH
T ss_pred HCCEEEEeCcccCC---------------------------------CCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 88999998865542 113458999999 8999999999999988753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-16 Score=169.49 Aligned_cols=334 Identities=10% Similarity=0.083 Sum_probs=208.0
Q ss_pred CCceEeecCCCC---CC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIG---LF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 107 ~~~vyLD~ag~g---l~----~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
.+..|+|+++.. ++ ++.+++++.+.+..... .++. . | ......+.++++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-----------------~~~~--~--~---~~~~~~~l~~~l 95 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-----------------AAAN--D--F---YNIPQLELAKKL 95 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-----------------CSCS--C--S---CCHHHHHHHHHH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-----------------cccc--c--c---CCHHHHHHHHHH
Confidence 457899996543 23 78899987664432100 0110 0 1 123456788899
Q ss_pred HHHcCCC-CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHH----HHhcC-----CEEEEEecc
Q 006746 180 MDFLNIS-ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRT----SEKRG-----ARVMSAEFS 248 (632)
Q Consensus 180 a~~l~a~-~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~----a~~~G-----~~v~~v~~~ 248 (632)
++++|.+ ++ .|+||+|+++|+.+++..+...+|++|++. ..||......+... ..+.+ .+++.++.+
T Consensus 96 a~~~~~~~~~--~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (419)
T 2eo5_A 96 VTYSPGNFQK--KVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP 173 (419)
T ss_dssp HHHSSCSSCE--EEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC
T ss_pred HHhCCCCcCC--EEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC
Confidence 9999987 44 799999999999998875421128887654 35665333222110 01112 357777764
Q ss_pred CCccc----------------cCHHHHH-HHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEE
Q 006746 249 WPRLR----------------INSEKLR-KMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILI 306 (632)
Q Consensus 249 ~~~~~----------------i~~~~l~-~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlv 306 (632)
.... ++.++|+ ++|++.. ...++++|++..+.+.||.+.| ++ +.++|+++|+++++
T Consensus 174 -~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~ 251 (419)
T 2eo5_A 174 -NPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVD 251 (419)
T ss_dssp -CSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred -ccccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 2211 4578898 8887420 0124678888888888999888 88 99999999999999
Q ss_pred ecccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCCCceeecccccccccccccC
Q 006746 307 DACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 307 Daaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~ 382 (632)
|.++. ++.. +..++.....+|+++ +-|.+|. + .++|+++++++.+ .+ ....+++ |
T Consensus 252 DE~~~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~~t----------~------ 310 (419)
T 2eo5_A 252 DEVQMGLGRTGKLFAIENFNTVPDVIT--LAKALGG-GIMPIGATIFRKDLD-FK-PGMHSNT----------F------ 310 (419)
T ss_dssp ECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TTSCCEEEEEEGGGC-CC-------C----------C------
T ss_pred eccccCCccCcchhhHHhcCCCCCEEE--ecccccC-CccceEEEEEchHhh-cC-CcccCCC----------C------
Confidence 99987 4421 112233234688775 4597774 4 6789999998876 55 2110000 0
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
. .|.+.+.+.. ++|+.+.+
T Consensus 311 -----------------------~------------~n~~~~~aa~------------------------aal~~~~~-- 329 (419)
T 2eo5_A 311 -----------------------G------------GNALACAIGS------------------------KVIDIVKD-- 329 (419)
T ss_dssp -----------------------C------------CCHHHHHHHH------------------------HHHHHHHH--
T ss_pred -----------------------C------------CCHHHHHHHH------------------------HHHHHHHH--
Confidence 0 0111222222 56665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCc
Q 006746 463 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS 542 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~ 542 (632)
+.++++.+.++|.+.|.++ ...++ ..|.++.+.+.. ++ .... +.+.+.++||.++.+
T Consensus 330 ---~~~~~~~~~~~l~~~L~~~-------~~~~~--------~~g~~~~i~~~~-~~--~~~~-~~~~l~~~Gv~v~~~- 386 (419)
T 2eo5_A 330 ---LLPHVNEIGKIFAEELQGL-------ADDVR--------GIGLAWGLEYNE-KK--VRDR-IIGESFKRGLLLLPA- 386 (419)
T ss_dssp ---HHHHHHHHHHHHHHHHTTS-------SSEEE--------EETTEEEEECSC-HH--HHHH-HHHHHHHTTEECEEE-
T ss_pred ---HHHHHHHHHHHHHHHHHHh-------hhheE--------eeeEEEEEEEec-Cc--cHHH-HHHHHHHCCCEEecC-
Confidence 7788999999999998764 01121 246677676521 00 0133 444444789988642
Q ss_pred cCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 543 LHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 543 ~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+.||+|+++.+|.+|++++++.|+++++.
T Consensus 387 ---------------------------------------~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 387 ---------------------------------------GRSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp ---------------------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1358999999999999999999999988753
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=178.46 Aligned_cols=166 Identities=9% Similarity=0.079 Sum_probs=128.7
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v 242 (632)
|+.......++.++++++++|.+ ..++++|+++|+.+++.++ .++||+|++. ..|++ ....+...++..|+++
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~----~~v~~~sG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~-~~~~~~~~~~~~G~~~ 149 (430)
T 3ri6_A 76 YSRSSNPTVEDLEQRLKNLTGAL----GVLALGSGMAAISTAILTL-ARAGDSVVTTDRLFGH-TLSLFQKTLPSFGIEV 149 (430)
T ss_dssp ----CCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHHHHTHHHHTTCEE
T ss_pred ccCCCCHHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCCchh-HHHHHHHHHHHcCCEE
Confidence 44334466789999999999985 2566678889999999988 7899998755 45654 3443344667899999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+.++.+ |+++|+++|+++ +++|.+...+|+||...|++ |.++|+++|+++++|.++..|.. .+.
T Consensus 150 ~~v~~~------d~~~l~~ai~~~------t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~---~~~ 214 (430)
T 3ri6_A 150 RFVDVM------DSLAVEHACDET------TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL---LEA 214 (430)
T ss_dssp EEECTT------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT---CCG
T ss_pred EEeCCC------CHHHHHHhhCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc---CCh
Confidence 999764 788999988754 58999999999999999999 99999999999999999988762 334
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEe
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVK 350 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr 350 (632)
..+++|+++.|++|++|.+..++|.+++.
T Consensus 215 ~~~g~div~~S~sK~l~g~g~~~gG~vv~ 243 (430)
T 3ri6_A 215 KRLGVDIEVLSSTKFISGGGTSVGGVLID 243 (430)
T ss_dssp GGGTCSEEEEECCCEEETTEEECCEEEEE
T ss_pred HHcCCEEEEECCcccccCCCCceEEEEEE
Confidence 45688999999999888311236666663
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=182.76 Aligned_cols=171 Identities=12% Similarity=0.077 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCC----CCCe---EEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFM----SVKN---LLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~----~gd~---ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
...+.|++|+++++.+ .|+||+|+|+|+.+++.++ .. +||+ |++...|+. .. ....+..|++++
T Consensus 77 ~~~~l~~~la~~~~~~----~v~~t~ggt~A~~~al~~~-~~~~~~~Gd~~~~viv~~~~~~-~~---~~~~~~~g~~~~ 147 (467)
T 1ax4_A 77 NYYDLKDKAKELFNYD----YIIPAHQGRGAENILFPVL-LKYKQKEGKAKNPVFISNFHFD-TT---AAHVELNGCKAI 147 (467)
T ss_dssp HHHHHHHHHHHHHCCC----EEEEESSHHHHHHHHHHHH-HHHHHHTTCCSSCEEEESSCCH-HH---HHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHcCCC----cEEEcCCcHHHHHHHHHHH-HHhhccCCCccceEEEeccccc-hh---hHHHhccCCcee
Confidence 3468899999999973 6999999999999999887 45 8998 776644433 11 233455788887
Q ss_pred EEeccC---------CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccc---hH-HHHHHhhCCcEEEEecc
Q 006746 244 SAEFSW---------PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYP---YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 244 ~v~~~~---------~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~p---l~-i~~~a~~~g~~vlvDaa 309 (632)
.++... .++.+|+++|+++|++.. ..++++|++...+|.+ |..+| ++ |.++|+++|+++++|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~ 225 (467)
T 1ax4_A 148 NIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 225 (467)
T ss_dssp ECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEch
Confidence 765421 135689999999998531 1246999999999999 78766 45 88999999999999998
Q ss_pred ccC-----------CCCCCCCCCCC------CCCcEEEEccccccCCCCCceEEEEEe-C-CCccc
Q 006746 310 ALG-----------PKDMDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVK-K-STVPI 356 (632)
Q Consensus 310 q~~-----------g~~m~~ldls~------~~~Df~~~S~hK~~G~~P~G~G~L~Vr-~-~~~~~ 356 (632)
+.. +. ..+++.. ..+|++++|+||.+|. |.| |+++.+ + +.++.
T Consensus 226 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~d~~~l~~~ 287 (467)
T 1ax4_A 226 RFCENAYFIKARDPKY--KNATIKEVIFDMYKYADALTMSAKKDPLL-NIG-GLVAIRDNEEIFTL 287 (467)
T ss_dssp THHHHHHHHHHHCGGG--TTCCHHHHHHHHGGGCSEEEEETTSTTCC-SSC-EEEEESSCHHHHHH
T ss_pred hhhhcchhcccccccc--CCCchhhhhhhhccccceEEEeccccCCC-Ccc-eEEEeCCHHHHHHH
Confidence 765 22 1222222 2479999999999995 545 666666 4 45443
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=184.15 Aligned_cols=204 Identities=12% Similarity=0.067 Sum_probs=140.9
Q ss_pred CCceEeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~-~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
..-.|||+.+..+.++.+.+++.+ .+.... . + .|+.. .-..+.|+.|+++++.
T Consensus 35 ~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~---~--------~-------------~y~~~--~g~~~lr~~ia~~~~~ 88 (412)
T 1yaa_A 35 GIGAYRDDNGKPWVLPSVKAAEKLIHNDSSY---N--------H-------------EYLGI--TGLPSLTSNAAKIIFG 88 (412)
T ss_dssp SSCCCBCTTSCBCCCHHHHHHHHHHHTCTTC---C--------C-------------CCCCT--TCCHHHHHHHHHHHHC
T ss_pred eeeeeeCCCCCCCCcHHHHHHHHhhhcCccc---c--------c-------------CCCCC--CCcHHHHHHHHHHHhc
Confidence 456788998888889999998776 543100 0 0 01100 1124788999998842
Q ss_pred ------CCCCccEEE--eCCHHHHHHHHHhhCC-CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec-cCCcccc
Q 006746 186 ------SENDYGMVF--TANRTSAFKLLAESYP-FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF-SWPRLRI 254 (632)
Q Consensus 186 ------~~~ey~vvf--t~naT~al~lv~~sl~-~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~-~~~~~~i 254 (632)
+++ .|+| |+|+|+|+.+++..+. +.+||+|++. ..|++ + ...++..|++++.++. +..++.+
T Consensus 89 ~~~~~~~~~--~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~----~-~~~~~~~g~~~~~v~~~~~~~~~~ 161 (412)
T 1yaa_A 89 TQSDALQED--RVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWAN----H-MAIFENQGLKTATYPYWANETKSL 161 (412)
T ss_dssp TTCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTT----H-HHHHHTTTCCEEEEECEETTTTEE
T ss_pred CCCCCCCcc--eEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCcc----H-HHHHHHcCceEEEEeeecCCCCcc
Confidence 444 6999 9999999999843221 3589997654 45654 1 3445678999999998 4335678
Q ss_pred CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CCC-----CCCC-CCCC
Q 006746 255 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PKD-----MDSF-GLSL 323 (632)
Q Consensus 255 ~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~~-----m~~l-dls~ 323 (632)
++++|++++.+++ ..+.++++++.+|+||..+|.+ |+++|+++|+++++|.++.. ..+ ..++ ++..
T Consensus 162 d~~~l~~~l~~~~---~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 238 (412)
T 1yaa_A 162 DLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVE 238 (412)
T ss_dssp CHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHh
Confidence 9999999997631 1246777799999999998754 67889999999999998743 110 0122 2222
Q ss_pred CC----CcEEEEccccccCCCCCc--eEEEE
Q 006746 324 VR----PDFLICSFYQIFGENPSG--FGCLF 348 (632)
Q Consensus 324 ~~----~Df~~~S~hK~~G~~P~G--~G~L~ 348 (632)
.. .++++.|++|.|| |.| +|+++
T Consensus 239 ~~~~~~~~i~~~s~sK~~~--~~GlriG~~~ 267 (412)
T 1yaa_A 239 KLSTVSPVFVCQSFAKNAG--MYGERVGCFH 267 (412)
T ss_dssp HTTTTCCEEEEEECTTTSC--CGGGCEEEEE
T ss_pred cCCCCcceEEEeccCCCCC--CcCCcceEEE
Confidence 23 3688999999999 778 59888
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-16 Score=168.32 Aligned_cols=330 Identities=12% Similarity=0.097 Sum_probs=208.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||+++. |.-++.+++++.+.+..... . .+ . ...+..++.+++++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-------~----------~~---~-----~~~~~~~~l~~~la 88 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLH-------T----------SN---L-----YYNENIAAAAKNLA 88 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSC-------C----------CT---T-----SBCHHHHHHHHHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccc-------c----------cc---c-----cCCHHHHHHHHHHH
Confidence 45779998765 33478888887654432100 0 00 0 02356678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C-----CCCCeEEE-eccccchhhHHHH--------HHHHhcCCEEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F-----MSVKNLLT-VYDYESEAVEAMI--------RTSEKRGARVMSA 245 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~-----~~gd~ilt-~~d~~s~~v~~~~--------~~a~~~G~~v~~v 245 (632)
++++. + .|+||+|+|+|+.+++..+. . .++++|++ ...||......+. ......+.++..+
T Consensus 89 ~~~~~--~--~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (395)
T 3nx3_A 89 KASAL--E--RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFA 164 (395)
T ss_dssp HHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEE
T ss_pred HhcCC--C--eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEe
Confidence 99983 3 69999999999999887652 1 34677664 4566653222211 0001123455555
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc-CCCC--CC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL-GPKD--MD 317 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~g~~--m~ 317 (632)
+.+ |+++|+++|+++ ++++++..+.+.+|.+.| ++ |.++|+++|+++++|.++. ++.. +.
T Consensus 165 ~~~------d~~~l~~~l~~~------~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~ 232 (395)
T 3nx3_A 165 KYN------DISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF 232 (395)
T ss_dssp CTT------CHHHHHTTCCTT------EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred CCC------CHHHHHHhccCC------eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch
Confidence 542 678888877643 588888889999999988 99 9999999999999999987 3321 11
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCC-ccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST-VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~-~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
..+.....+|++++| |.+|. +.++|+++++++. ++.+.+...+++ |.
T Consensus 233 ~~~~~~~~~d~~t~s--K~~~~-G~~~G~~~~~~~~~~~~~~~~~~~~~----------~~------------------- 280 (395)
T 3nx3_A 233 AYEHAQILPDIMTSA--KALGC-GLSVGAFVINQKVASNSLEAGDHGST----------YG------------------- 280 (395)
T ss_dssp GGGGGTCCCSEEEEC--GGGTT-TSCCEEEEECHHHHHHHSCTTCCSSC----------BS-------------------
T ss_pred hHHhcCCCCCEEEec--ccccC-CCceEEEEEchhhhhhhcCCcccCCC----------CC-------------------
Confidence 122223457887766 97764 5578999999887 665654322111 00
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
.|.....+. .++|+.+.. +.+.++.+.+.++
T Consensus 281 ----------------------~~~~~~~aa------------------------~aal~~~~~---~~~~~~~~~~~~~ 311 (395)
T 3nx3_A 281 ----------------------GNPLVCAGV------------------------NAVFEIFKE---EKILENVNKLTPY 311 (395)
T ss_dssp ----------------------CCHHHHHHH------------------------HHHHHHHHH---TTHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHH------------------------HHHHHHHHh---hHHHHHHHHHHHH
Confidence 000111111 156665543 3445566666666
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~ 556 (632)
+++.|.++.. ..|.+... ...+.++.|.+.+. .+...+.+.+.++||.++.|
T Consensus 312 ~~~~l~~~~~----~~~~~~~~-----~~~g~~~~~~~~~~----~~~~~~~~~l~~~Gi~v~~~--------------- 363 (395)
T 3nx3_A 312 LEQSLDELIN----EFDFCKKR-----KGLGFMQGLSLDKS----VKVAKVIQKCQENALLLISC--------------- 363 (395)
T ss_dssp HHHHHHHHHH----HCTTEEEE-----EEETTEEEEEECTT----SCHHHHHHHHHHTTEECEEE---------------
T ss_pred HHHHHHHHHH----hCCCeEEE-----EeEEEEEEEEeCCc----chHHHHHHHHHHCCCEEecC---------------
Confidence 6666655410 01334322 12477888887652 24556666666789988643
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+.+.||+|+++..|.+|++++++.|+++++
T Consensus 364 -------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 364 -------------------------GENDLRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp -------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 235999999999999999999999999875
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.2e-17 Score=174.44 Aligned_cols=333 Identities=9% Similarity=0.068 Sum_probs=208.5
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|||.++. |..++.+++++.+.+... + +.+.. | ..+..++.+++++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~--------~------------~~~~~--~---~~~~~~~l~~~la 109 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--------W------------HTSNV--F---TNEPALRLGRKLI 109 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC--------C------------CCCTT--S---CCHHHHHHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhc--------c------------cccCc--c---CCHHHHHHHHHHH
Confidence 56789999654 455788888876644321 0 00000 1 2356678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC------CCCC-eEEE-eccccchhhHHHHHHH---HhcCC-----EEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF------MSVK-NLLT-VYDYESEAVEAMIRTS---EKRGA-----RVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~------~~gd-~ilt-~~d~~s~~v~~~~~~a---~~~G~-----~v~~ 244 (632)
+++|. + .|+||+|+|+|+.+++..+.- .+|+ +|++ ...||.....++.... .+.+. .+..
T Consensus 110 ~~~g~--~--~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~ 185 (420)
T 2pb2_A 110 DATFA--E--RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIH 185 (420)
T ss_dssp HHSSC--S--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEE
T ss_pred hhCCC--C--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEE
Confidence 99984 2 699999999999999887621 0564 6664 4567753333321100 01111 2555
Q ss_pred EeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcc----ccchH-HHHHHhhCCcEEEEeccccC-CCC--C
Q 006746 245 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA----RYPYL-WMRIAQENDWHILIDACALG-PKD--M 316 (632)
Q Consensus 245 v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~----~~pl~-i~~~a~~~g~~vlvDaaq~~-g~~--m 316 (632)
++. .|+++|+++|+++ +++|++..+++.+|. .-+++ |.++|+++|+++++|.++.. +.. +
T Consensus 186 ~~~------~d~~~le~~i~~~------~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 186 VPF------NDLHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp ECT------TCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred ecC------CCHHHHHHHhccC------ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 543 2788999888643 588999888888886 34677 88999999999999999852 211 0
Q ss_pred CCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 317 DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
..++.....+|++ ++.|.+|. +..+|++++++++++.+.+...+++ |
T Consensus 254 ~~~~~~~~~~dii--t~sK~l~~-G~~iG~~~~~~~l~~~l~~~~~~~t----------~-------------------- 300 (420)
T 2pb2_A 254 FAYMHYGVTPDIL--TSAKALGG-GFPVSAMLTTQEIASAFHVGSHGST----------Y-------------------- 300 (420)
T ss_dssp SHHHHHTCCCSEE--EECGGGGT-TSCCEEEEECHHHHTTCC----CCE----------E--------------------
T ss_pred HHHHhcCCCCCeE--EecccccC-CCceEEEEEhHHHHHhhcCCCcCcc----------c--------------------
Confidence 1112223468987 46798872 3459999999876655543111100 0
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
. .|.....+.. ++|+.+.+ +.+.++.+.+.++
T Consensus 301 ---------~------------~~~~~~aa~~------------------------a~L~~~~~---~~~~~~~~~~~~~ 332 (420)
T 2pb2_A 301 ---------G------------GNPLACAVAG------------------------AAFDIINT---PEVLQGIHTKRQQ 332 (420)
T ss_dssp ---------C------------CCHHHHHHHH------------------------HHHHHHSS---HHHHHHHHHHHHH
T ss_pred ---------C------------cCHHHHHHHH------------------------HHHHHHHh---ccHHHHHHHHHHH
Confidence 0 0000111111 45655543 5678889999999
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~ 556 (632)
|.+.|.++.. +.|.+.... ..|.++.|.+.+..+ .+...+.+.+.++||.++.|
T Consensus 333 l~~~L~~~~~----~~~~~~~~~-----~~g~~~~v~~~~~~~--~~~~~l~~~l~~~Gi~v~~~--------------- 386 (420)
T 2pb2_A 333 FVQHLQAIDE----QFDIFSDIR-----GMGLLIGAELKPKYK--GRARDFLYAGAEAGVMVLNA--------------- 386 (420)
T ss_dssp HHHHHHHHHH----HHCCEEEEE-----EETTEEEEEECGGGT--TCHHHHHHHHHHTTEECEES---------------
T ss_pred HHHHHHHHHh----cCCCeEEEE-----ecceEEEEEECCCch--HHHHHHHHHHHHCCCEEEeC---------------
Confidence 9999987610 013333221 247788887764211 13455555555589887643
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+.||+|+++..|.|||+++++.|+++++.
T Consensus 387 -------------------------~~~~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 387 -------------------------GADVMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp -------------------------STTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1358999999999999999999999998753
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=170.30 Aligned_cols=169 Identities=14% Similarity=0.175 Sum_probs=121.9
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHH--HHHHhhCC--CCC---------CCeEEE-eccccchhhHHHHHHHHhc
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAF--KLLAESYP--FMS---------VKNLLT-VYDYESEAVEAMIRTSEKR 238 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al--~lv~~sl~--~~~---------gd~ilt-~~d~~s~~v~~~~~~a~~~ 238 (632)
.+.|+.|+++++++++ .|++|+|+++++ .+++..+. +.+ +++|++ ...|+. ....++..
T Consensus 79 ~~lr~~ia~~~~~~~~--~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~-----~~~~~~~~ 151 (422)
T 3d6k_A 79 ADIRELWAEALGLPAD--LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDR-----HFTITEHF 151 (422)
T ss_dssp HHHHHHHHHHHTCCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH-----HHHHHHHH
T ss_pred HHHHHHHHHHhCCChh--HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHH-----HHHHHHHc
Confidence 4799999999999876 799999999997 78877762 112 336654 345553 23445678
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEE-EeccCCCCccccchH----HHHHHh-hCCcEEEEeccccC
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYL----WMRIAQ-ENDWHILIDACALG 312 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~-~~~~sn~TG~~~pl~----i~~~a~-~~g~~vlvDaaq~~ 312 (632)
|++++.++.+ +++ +++++|++++++. +++++. ++..+|+||..+|.+ |+++|+ ++|+++++|.++..
T Consensus 152 g~~~~~v~~~-~~g-~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~ 224 (422)
T 3d6k_A 152 GFEMINVPMT-DEG-PDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYAL 224 (422)
T ss_dssp TCEEEEEEEE-TTE-ECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTT
T ss_pred CCEEEecCCC-CCC-CCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccc
Confidence 9999999997 344 8999999998642 257776 799999999999986 456677 89999999999863
Q ss_pred ---CCC---CCCC-C----CCCCCCcEEEEccccccCCCC-CceEEEEEeCCCcccc
Q 006746 313 ---PKD---MDSF-G----LSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPIL 357 (632)
Q Consensus 313 ---g~~---m~~l-d----ls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L 357 (632)
..+ ..++ + +...+.++++.|+.|+.+ | ..+|+++++++.++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~--~GlriG~~~~~~~l~~~l 279 (422)
T 3d6k_A 225 HTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITH--AGSGVSFFASSKENIEWY 279 (422)
T ss_dssp CBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSC--TTSSCEEEECCHHHHHHH
T ss_pred cccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcC--cccceEEEEeCHHHHHHH
Confidence 110 0122 1 123456899999999843 4 2489999887665444
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-16 Score=170.66 Aligned_cols=330 Identities=10% Similarity=0.073 Sum_probs=210.5
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|+|+++. |-.++.+++++.+.+... + +.+.. | ..+...+.+++++
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~--------~------------~~~~~--~---~~~~~~~l~~~la 128 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--------T------------LTSRA--F---YNNVLGEYEEYIT 128 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTC--------S------------CCCTT--S---EESSHHHHHHHHH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhc--------C------------cccCc--c---CCHHHHHHHHHHH
Confidence 56789998762 225688888876544321 0 00000 1 1234567889999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC--------CCCC-CeEEE-eccccchhhHHHHHHHH----hcC-----CE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP--------FMSV-KNLLT-VYDYESEAVEAMIRTSE----KRG-----AR 241 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~--------~~~g-d~ilt-~~d~~s~~v~~~~~~a~----~~G-----~~ 241 (632)
+++|. + .|+||+|+|+|+.+++..+. ..+| ++|++ ...||......+. ... +.| ..
T Consensus 129 ~~~g~--~--~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~-~~g~~~~~~~~~p~~~~ 203 (439)
T 2oat_A 129 KLFNY--H--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAIS-SSTDPTSYDGFGPFMPG 203 (439)
T ss_dssp HHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHT-TCCCHHHHTTSCSCCTT
T ss_pred HhcCC--C--EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhh-cCCChhcccCCCCCCCC
Confidence 99974 2 69999999999999887752 1356 67664 4467753333321 100 111 45
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc----chH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~----pl~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
+..+|. .|+++|+++|.. .++++|++..+.+.+|... +++ +.++|+++|+++++|.+|.. +..
T Consensus 204 v~~~~~------~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~ 272 (439)
T 2oat_A 204 FDIIPY------NDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART 272 (439)
T ss_dssp EEEECS------SCHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred eEEeCC------CCHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccC
Confidence 666654 278899998852 1358888888888899887 799 99999999999999999852 221
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
+..++.....+|++ ++.|.+|. . ..+|+++++++.++.+.+...++
T Consensus 273 g~~~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~---------------------------- 321 (439)
T 2oat_A 273 GRWLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDDDIMLTIKPGEHGS---------------------------- 321 (439)
T ss_dssp SSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTSCTTSSCC----------------------------
T ss_pred CcchhHHHhCCCCcEE--EecccccC-CCCCeEEEEECHHHHhccCCCCccc----------------------------
Confidence 11122223468977 66698882 1 13899999988766554311110
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC 472 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~ 472 (632)
| |. .|.....+.. ++|+.+.+. .+.+|.+.
T Consensus 322 ---------t--~~------------~~~~~~aaa~------------------------aal~~~~~~---~~~~~~~~ 351 (439)
T 2oat_A 322 ---------T--YG------------GNPLGCRVAI------------------------AALEVLEEE---NLAENADK 351 (439)
T ss_dssp ---------S--ST------------TCHHHHHHHH------------------------HHHHHHHHT---THHHHHHH
T ss_pred ---------C--CC------------cCHHHHHHHH------------------------HHHHHHhhh---hHHHHHHH
Confidence 0 00 0001111111 567766552 56788999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHH
Q 006746 473 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 552 (632)
Q Consensus 473 L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~ 552 (632)
+.++|++.|.++. .+.+... ...|.++.+.+.+..+ .+...+.+.+.++||.++.+
T Consensus 352 ~~~~l~~~L~~l~------~~~~~~~-----~~~g~~~~v~l~~~~~--~~~~~l~~~l~~~Gv~v~~~----------- 407 (439)
T 2oat_A 352 LGIILRNELMKLP------SDVVTAV-----RGKGLLNAIVIKETKD--WDAWKVCLRLRDNGLLAKPT----------- 407 (439)
T ss_dssp HHHHHHHHHTTSC------TTTEEEE-----EEETTEEEEEECCCSS--CCHHHHHHHHHHTTEECCBS-----------
T ss_pred HHHHHHHHHHHhc------CCCcEEE-----EeeeeEEEEEEecCcc--HHHHHHHHHHHHCCeEEecC-----------
Confidence 9999999999883 3444221 1257788887765211 24455555555679887631
Q ss_pred HHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 553 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 553 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+.++||+++++..|.+||+++++.|++.++
T Consensus 408 -----------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 408 -----------------------------HGDIIRFAPPLVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp -----------------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 235899999999999999999999998875
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=182.17 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCC-----C----CeEEEeccccchhhHHHHHHHHhcCCE
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMS-----V----KNLLTVYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~-----g----d~ilt~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
...+.|++++++++.+ .++||+|+|+|+.+++.++ ..+ | |+|++...|.. .... .....|+.
T Consensus 75 ~~~~l~~~la~~~~~~----~v~~t~~gt~A~~~al~~~-~~~~~~~~G~~~~d~Ii~~~~h~~-t~~~---~~~~~~~~ 145 (467)
T 2oqx_A 75 SYYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVL-IKKREQEKGLDRSKMVAFSNYFFD-TTQG---HSQINGCT 145 (467)
T ss_dssp HHHHHHHHHHHHHCCS----EEEEEC--CCSHHHHHHHH-HHHHHHHHCCCTTTCEEEESSCCH-HHHH---HHHHTTCE
T ss_pred hhHHHHHHHHHHhCcC----cEEEcCCcHHHHHHHHHHH-hccccccCCCCccceEEecccccc-cchh---hhhccCcc
Confidence 3457899999999973 6999999999999998887 455 7 88776644433 1111 22345666
Q ss_pred EEEEec----cC-----CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccc---hH-HHHHHhhCCcEEEEe
Q 006746 242 VMSAEF----SW-----PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYP---YL-WMRIAQENDWHILID 307 (632)
Q Consensus 242 v~~v~~----~~-----~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~p---l~-i~~~a~~~g~~vlvD 307 (632)
+..... +. .++.+|+++|+++|++.. ..++++|++.+.+|.+ |..+| ++ |.++|+++|+++++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 2oqx_A 146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223 (467)
T ss_dssp EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred eeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 554311 10 235689999999998521 1236899999999998 77765 56 889999999999999
Q ss_pred ccccC-----------CCCCCCCCCCC------CCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 308 ACALG-----------PKDMDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 308 aaq~~-----------g~~m~~ldls~------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
++|.. +. ...++.. ..+|++++|+||.+|. |.| |+++.+++
T Consensus 224 ~a~~~e~~~~~~~~~~~~--~g~~~~~~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~~~ 281 (467)
T 2oqx_A 224 SARFAENAYFIKQREAEY--KDWTIEQITRETYKYADMLAMSAKKDAMV-PMG-GLLCMKDD 281 (467)
T ss_dssp CTTHHHHHHHHHHHCGGG--TTSCHHHHHHHHGGGCSEEEEESSSTTCC-SSC-EEEEECSG
T ss_pred chhhhhhhhhcccccccc--cCccHHHHhhhhhccCCeEEEecccccCC-CCc-eEEEecCh
Confidence 88765 22 1222221 2479999999999995 645 66666666
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-16 Score=168.70 Aligned_cols=330 Identities=8% Similarity=0.064 Sum_probs=204.6
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||+++ .|..++.+++++.+.+... + +.+.. | ..+...+.+++++
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~--------~------------~~~~~--~---~~~~~~~l~~~la 117 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--------T------------ICSRA--F---FSVPLGICERYLT 117 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTC--------S------------CCCTT--S---EEHHHHHHHHHHH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhC--------C------------CccCC--c---CCHHHHHHHHHHH
Confidence 5678999766 2225678888876644321 0 00000 1 2355678889999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC--------CCCC-CeEEEe-ccccchhhHHHHHHHH----hcC-----CE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP--------FMSV-KNLLTV-YDYESEAVEAMIRTSE----KRG-----AR 241 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~--------~~~g-d~ilt~-~d~~s~~v~~~~~~a~----~~G-----~~ 241 (632)
++++. + .|+||+|+|+|+.+++..+. ..+| ++|++. ..||.....++. ... +.+ ..
T Consensus 118 ~~~g~--~--~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~-~~g~~~~~~~~~p~~~~ 192 (433)
T 1z7d_A 118 NLLGY--D--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCIS-ASTTKKCTSNFGPFAPQ 192 (433)
T ss_dssp HHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------C
T ss_pred hhcCC--C--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhc-ccCCccccccCCCCCCC
Confidence 99984 2 69999999999999887642 2357 777654 467653222221 111 011 24
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc----chH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~----pl~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
+..+|. .|+++|+++|.. .++++|++..+.+.+|... +++ |.++|+++|+++++|.+|.. +..
T Consensus 193 v~~~~~------~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~ 261 (433)
T 1z7d_A 193 FSKVPY------DDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT 261 (433)
T ss_dssp EEEECT------TCHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred eEEeCC------CCHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcC
Confidence 444443 278999999952 1358888888888899987 788 99999999999999999862 221
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCCCc---eEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccc
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P~G---~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
+..++.....+|++ ++.|.+| + | +|++++++++++.+.+...+++
T Consensus 262 g~~~~~~~~~~~~di~--t~sK~l~--~-G~~~~G~v~~~~~~~~~l~~~~~~~t------------------------- 311 (433)
T 1z7d_A 262 GKLLCVHHYNVKPDVI--LLGKALS--G-GHYPISAVLANDDIMLVIKPGEHGST------------------------- 311 (433)
T ss_dssp SSSSGGGGGTCCCSEE--EECGGGG--T-TSSCCEEEEECHHHHTTCCTTCCCCT-------------------------
T ss_pred CcchhhHhcCCCCCEE--EECcccc--C-CCCCeEEEEECHHHHhhhcccccccc-------------------------
Confidence 11122223468987 5569888 3 5 8999999887665543211100
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 470 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~ 470 (632)
|. .|.....+. .++|+.+.+. .+.++.
T Consensus 312 --------------~~------------~~~~~~aaa------------------------~aal~~~~~~---~~~~~~ 338 (433)
T 1z7d_A 312 --------------YG------------GNPLAASIC------------------------VEALNVLINE---KLCENA 338 (433)
T ss_dssp --------------TT------------TCHHHHHHH------------------------HHHHHHHHHT---THHHHH
T ss_pred --------------CC------------CCHHHHHHH------------------------HHHHHHHHhc---cHHHHH
Confidence 00 001111111 1567766542 467788
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHh
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~ 550 (632)
+.+.++|++.|.++.. +.|.+... ...|.++.+.+.+.+ .+...+.+.+.++||.++.+
T Consensus 339 ~~~~~~l~~~L~~l~~----~~~~~~~~-----~~~g~~~~i~~~~~~---~~~~~~~~~l~~~Gv~v~~~--------- 397 (433)
T 1z7d_A 339 EKLGGPFLENLKRELK----DSKIVRDV-----RGKGLLCAIEFKNEL---VNVLDICLKLKENGLITRDV--------- 397 (433)
T ss_dssp HHHHHHHHHHHHHHHT----TCTTEEEE-----EEETTEEEEEECTTT---CCHHHHHHHHHHTTEECCEE---------
T ss_pred HHHHHHHHHHHHHHHH----hCCCeEEE-----EeeeeEEEEEEccCh---hHHHHHHHHHHHCCeEEecC---------
Confidence 8999999999988721 12433221 125778888776421 23455555555679887632
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.++||+++++..|.|||+++++.|+++++.
T Consensus 398 -------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 398 -------------------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp -------------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 1358999999999999999999999998754
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-17 Score=174.16 Aligned_cols=297 Identities=12% Similarity=0.092 Sum_probs=183.1
Q ss_pred HHHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcC--------
Q 006746 173 SAMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRG-------- 239 (632)
Q Consensus 173 ~~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G-------- 239 (632)
.+.|+.|++++ +++++ .|+||+|+++++.++ ..+ +++||+|++ ...|++ .... ...+...|
T Consensus 101 ~~l~~~ia~~~~~~~~~~~~--~i~~t~G~~~al~~l-~~l-~~~gd~Vl~~~p~y~~-~~~~-~~~~g~~~~~~~~~~~ 174 (432)
T 3ei9_A 101 KPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRL-QVM-FGSNVTIAVQDPSYPA-YVDS-SVIMGQTGQFNTDVQK 174 (432)
T ss_dssp HHHHHHHHHHHHTTTTCCGG--GEEEESCHHHHHHHH-HHH-HCTTCCEEEEESCCTH-HHHH-HHHHTCSCCEETTTTE
T ss_pred HHHHHHHHHHHHccCCCCcc--eEEECCChHHHHHHH-HHH-cCCCCEEEEeCCCCHH-HHHH-HHHcCCcccccccccc
Confidence 46788888886 77765 799999999999986 444 578999765 456664 3322 23333333
Q ss_pred -CEEEEEeccCCcc-ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-
Q 006746 240 -ARVMSAEFSWPRL-RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG- 312 (632)
Q Consensus 240 -~~v~~v~~~~~~~-~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~- 312 (632)
.+++.++.+...+ ..+++ . .+++++++++..+|+||..+|.+ |+++|+++|+++++|.++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~l~-------~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~ 243 (432)
T 3ei9_A 175 YGNIEYMRCTPENGFFPDLS-------T----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMY 243 (432)
T ss_dssp ETTCEEEECCGGGTTSCCGG-------G----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred cCceEEeccCcccCCcCChh-------h----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhh
Confidence 3677888763221 22221 1 12468999999999999999755 55669999999999999873
Q ss_pred --CCCCCCCCCC----CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCC
Q 006746 313 --PKDMDSFGLS----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 313 --g~~m~~ldls----~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
+. .+..+. ..+.++++.|++|.||.+...+|+++++++.+..-.... . ..|.
T Consensus 244 ~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~----~-------~~~~--------- 301 (432)
T 3ei9_A 244 MSDD--NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPV----A-------KDFN--------- 301 (432)
T ss_dssp CCSS--CCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBH----H-------HHHH---------
T ss_pred ccCC--CCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHH----H-------HHHH---------
Confidence 21 122221 135679999999999842223799998887631100000 0 0000
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
.. ...+ + ++.+.+...+.. .+|.......++.+
T Consensus 302 -------~~---~~~~--~-----------~~~~~~~~~a~~------------------------~~l~~~~~~~~~~~ 334 (432)
T 3ei9_A 302 -------RI---ICTC--F-----------NGASNISQAGAL------------------------ACLTPEGLEAMHKV 334 (432)
T ss_dssp -------HH---HHHS--C-----------CCSCHHHHHHHH------------------------HHSSHHHHHHHHHH
T ss_pred -------HH---hccc--c-----------CCCCHHHHHHHH------------------------HHHhcccHHHHHHH
Confidence 00 0000 0 001111111111 23321111135777
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCH-HHHHHHHHhCCcEEccCccCC
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHH 545 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~-~~V~kla~~~gI~lr~G~~c~ 545 (632)
.++++.+.+++++.|.++ | +++++|. .+..+.+.+.+ .+. +.++++++++||.++.|..|.
T Consensus 335 ~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~-----~~~~~~~~~ll~~~gv~v~~g~~f~ 396 (432)
T 3ei9_A 335 IGFYKENTNIIIDTFTSL------G---YDVYGGK----NAPYVWVHFPN-----QSSWDVFAEILEKTHVVTTPGSGFG 396 (432)
T ss_dssp HHHHHHHHHHHHHHHHHT------T---CCEEECS----SSSEEEEECTT-----SCHHHHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHHHC------C---ceecCCC----cceEEEEECCC-----CCHHHHHHHHHHHCCEEEeCchHhC
Confidence 888899999999999887 4 3455442 45667777663 344 455677888899998875443
Q ss_pred hHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 546 IWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
+ .+.+.||+|+ .++.+||+..++.|++-
T Consensus 397 ~----------------------------------~~~~~iRis~--~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 397 P----------------------------------GGEGFVRVSA--FGHRENILEACRRFKQL 424 (432)
T ss_dssp G----------------------------------GGTTEEEEEC--CSCHHHHHHHHHHHHHH
T ss_pred C----------------------------------CCCCEEEEEe--cCCHHHHHHHHHHHHHH
Confidence 2 1346999996 67999999999988753
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=175.49 Aligned_cols=304 Identities=12% Similarity=0.027 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHcC-CCCCCccEEEeCCHHHHHHHHHhhCC-C-C-----------CCCeEEEe-ccccchhhHHHHHH
Q 006746 170 GLESAMKKRIMDFLN-ISENDYGMVFTANRTSAFKLLAESYP-F-M-----------SVKNLLTV-YDYESEAVEAMIRT 234 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~-a~~~ey~vvft~naT~al~lv~~sl~-~-~-----------~gd~ilt~-~d~~s~~v~~~~~~ 234 (632)
+...+.+++++++++ .+++ .|+||+|+|+|++.++.... + . +|++|++. ..||.....++.-.
T Consensus 101 ~~~~~la~~la~~~~~~~~~--~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~ 178 (449)
T 2cjg_A 101 VAMARFVETFARVLGDPALP--HLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLT 178 (449)
T ss_dssp HHHHHHHHHHHHHHCCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTC
T ss_pred HHHHHHHHHHHHhcCCCCCC--EEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhc
Confidence 455688889999997 3433 79999999999999876431 1 1 27787754 46775333222100
Q ss_pred ----HHhcCC-----EEEEEeccC--Ccc-------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH
Q 006746 235 ----SEKRGA-----RVMSAEFSW--PRL-------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL 292 (632)
Q Consensus 235 ----a~~~G~-----~v~~v~~~~--~~~-------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~ 292 (632)
..+.|. .+..+|.+. ... .+++++|+++|.+.. .++++|++..++|.+|.+.| ++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 179 NTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRP---HDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp CSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHST---TTEEEEEECSEETTTTCEECCHHHHH
T ss_pred CCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcC---CceEEEEEeCcCCCCCCccCCHHHHH
Confidence 112333 566666542 111 245667888886421 24689999999999999888 99
Q ss_pred -HHHHHhhCCcEEEEecccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-Ccee
Q 006746 293 -WMRIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVS 367 (632)
Q Consensus 293 -i~~~a~~~g~~vlvDaaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~ 367 (632)
+.++|+++|+++++|.+|. ++.. +..++.....+|++++| |.+ | +|++++++++++.+.+.+.+ +..
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l---~--iG~~~~~~~~~~~l~~~~~~~~~~- 327 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFG--KKT---Q--VCGVMAGRRVDEVADNVFAVPSRL- 327 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGG---S--SEEEEECGGGGGSTTCTTTSTTSS-
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEec--Ccc---c--EEEEEECHHHhhhhhhcccCCccc-
Confidence 9999999999999999988 3321 01111123468988766 966 4 78999999887765542211 000
Q ss_pred ecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCC
Q 006746 368 LLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGG 447 (632)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 447 (632)
.+| |. .|.+...+..
T Consensus 328 --------------------------------~~t--~~------------~n~~~~~aa~------------------- 342 (449)
T 2cjg_A 328 --------------------------------NST--WG------------GNLTDMVRAR------------------- 342 (449)
T ss_dssp --------------------------------CCS--SS------------SCHHHHHHHH-------------------
T ss_pred --------------------------------ccC--CC------------CCHHHHHHHH-------------------
Confidence 001 00 1111222222
Q ss_pred chhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCc-EEEECCCCCCCCCcEEEEEEccCCCCccCHHH
Q 006746 448 SEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL-VKIYGPKIRFDRGPALAFNVFDWKREKIEPVL 526 (632)
Q Consensus 448 ~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~-v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~ 526 (632)
++|+.+.+ +.+.+|++.+.++|++.|.++.. +.|. +... ...|.++.|.+.+. .....
T Consensus 343 -----aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~~~~-----~~~g~~~~~~~~~~----~~~~~ 401 (449)
T 2cjg_A 343 -----RILEVIEA---EGLFERAVQHGKYLRARLDELAA----DFPAVVLDP-----RGRGLMCAFSLPTT----ADRDE 401 (449)
T ss_dssp -----HHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHH----HSTTTSEEE-----EEETTEEEEECSSH----HHHHH
T ss_pred -----HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh----hCCCceeeE-----eeccEEEEEEECCh----HHHHH
Confidence 67776655 34678888999999999987620 0132 2221 12577888766531 12334
Q ss_pred HHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHH
Q 006746 527 VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 606 (632)
Q Consensus 527 V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l 606 (632)
+.+.+.++||.++.| +.+.||+|+++.+|.+||+++++.|
T Consensus 402 ~~~~l~~~Gv~v~~~----------------------------------------g~~~iRi~~~~~~t~e~i~~~l~~l 441 (449)
T 2cjg_A 402 LIRQLWQRAVIVLPA----------------------------------------GADTVRFRPPLTVSTAEIDAAIAAV 441 (449)
T ss_dssp HHHHHHHTTEECEEE----------------------------------------TTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEecC----------------------------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 444344578887632 2369999999999999999999999
Q ss_pred HHhhhh
Q 006746 607 AQFLDA 612 (632)
Q Consensus 607 ~~~l~~ 612 (632)
+++++.
T Consensus 442 ~~~l~~ 447 (449)
T 2cjg_A 442 RSALPV 447 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=172.48 Aligned_cols=206 Identities=9% Similarity=0.027 Sum_probs=142.3
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
.--+|+|+.+..+....+.+++....... ..+ +| +. ..| ..+.|+.++++++..
T Consensus 34 ~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~-----------~Y----~~---~~g------~~~lr~~ia~~~~~~ 87 (401)
T 7aat_A 34 GVGAYRDDNGKPYVLNCVRKAEAMIAAKK--MDK-----------EY----LP---IAG------LADFTRASAELALGE 87 (401)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHTT--CCC-----------CC----CC---TTC------CHHHHHHHHHHHHCT
T ss_pred eeeeEECCCCCEechHHHHHHHHHhcccc--ccc-----------CC----CC---CCC------CHHHHHHHHHHhcCC
Confidence 45679999999888888888765432110 000 00 00 011 247888888888753
Q ss_pred ------CCCccEEE--eCCHHHHHHHHHhhCC--CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC-Ccccc
Q 006746 187 ------ENDYGMVF--TANRTSAFKLLAESYP--FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW-PRLRI 254 (632)
Q Consensus 187 ------~~ey~vvf--t~naT~al~lv~~sl~--~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~-~~~~i 254 (632)
++ +|+| |+|+|+|+++++..+. .++||+|++. ..|++ + ...++..|++++.++.+. .++.+
T Consensus 88 ~~~~~~~~--~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~--~---~~~~~~~g~~~~~~~~~~~~~~~~ 160 (401)
T 7aat_A 88 NSEAFKSG--RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGN--H---TPIFRDAGLQLQAYRYYDPKTCSL 160 (401)
T ss_dssp TCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTT--H---HHHHHHTTCEEEEEECEETTTTEE
T ss_pred CccccccC--ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchh--H---HHHHHHcCCeeEeeeeeccccCcc
Confidence 55 6766 9999999999887652 3789997754 34543 2 234567899999999852 35779
Q ss_pred CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEecccc-CCCC-----CCCCC--CC
Q 006746 255 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACAL-GPKD-----MDSFG--LS 322 (632)
Q Consensus 255 ~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~-~g~~-----m~~ld--ls 322 (632)
+++++++.+.+. +.++++++++..+|+||..++ ++ |+++|+++|+++++|.+.. +..+ ..++. ..
T Consensus 161 d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~ 237 (401)
T 7aat_A 161 DFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE 237 (401)
T ss_dssp CHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh
Confidence 999988888752 235689999999999998887 55 6788999999999998743 2221 00010 02
Q ss_pred CCCCcEEEEccccccCCCCCc--eEEEEEe
Q 006746 323 LVRPDFLICSFYQIFGENPSG--FGCLFVK 350 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr 350 (632)
...-.+++.|++|.|| +.| +|+|++.
T Consensus 238 ~~~~~i~~~S~sK~~~--~~G~RiG~l~~~ 265 (401)
T 7aat_A 238 QGIDVVLSQSYAKNMG--LYGERAGAFTVI 265 (401)
T ss_dssp TTCCCEEEEECTTTSC--CGGGCEEEEEEE
T ss_pred cCCcEEEEecCCcccc--cccCceEEEEEE
Confidence 2345789999999999 557 7998873
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-17 Score=177.90 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=138.1
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc-CC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l-~a 185 (632)
.--+|+|+.+..+..+.+.+++...........+ +| ... .| ..+.|+.+++++ |.
T Consensus 55 ~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~-----------~Y--~~~-----~G------~~~lr~~ia~~l~g~ 110 (448)
T 3meb_A 55 GVGAYRDESGKPWILPAVKEAEAIISSDLSKYNK-----------EY--PPV-----AG------FPLFLEAAQFLMFGK 110 (448)
T ss_dssp SSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCC-----------SC--CCT-----TC------CHHHHHHHHHHHHCT
T ss_pred ecccccCCCCCEechHHHHHHHHHHhhcccCCCC-----------CC--CCC-----cc------hHHHHHHHHHHhcCC
Confidence 4567999999999999999985443200000000 01 000 01 247899999987 87
Q ss_pred C-----CCCccEEE--eCCHHHHHHHHHh--hCCCCCCCeEEEec-cccchhhHHHHHHHH----hcCCEEEEEec-cCC
Q 006746 186 S-----ENDYGMVF--TANRTSAFKLLAE--SYPFMSVKNLLTVY-DYESEAVEAMIRTSE----KRGARVMSAEF-SWP 250 (632)
Q Consensus 186 ~-----~~ey~vvf--t~naT~al~lv~~--sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~----~~G~~v~~v~~-~~~ 250 (632)
+ ++ .|+| |+++|+|+++++. .+ +.+||+|++.. .|++ . ...++ ..|++++.++. +..
T Consensus 111 ~~~~~~~~--~i~~~~t~ggt~al~l~~~~~~~-~~~gd~Vlv~~p~~~~-~----~~~~~~~~~~~G~~v~~~~~~~~~ 182 (448)
T 3meb_A 111 DSKAAQEG--RIASCQSLSGTGSLHIGFEFLHL-WMPKAEFYMPSTTWPN-H----YGIYDKVFNKLKVPYKEYTYLRKD 182 (448)
T ss_dssp TCHHHHTT--CEEEEEESHHHHHHHHHHHHHHH-HCTTCCEEEESSCCTH-H----HHHHHHHHCTTTSCCEEECCBCTT
T ss_pred CccccCcC--cEEEEECCcHHHHHHHHHHHHHH-hCCCCEEEECCCCCHh-H----HHHHHhhHHhCCCeEEEEeccccc
Confidence 6 34 7999 9999999998543 33 56899977544 5543 2 23344 78999999998 533
Q ss_pred -ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc-CCCCCCCCC----
Q 006746 251 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL-GPKDMDSFG---- 320 (632)
Q Consensus 251 -~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~-~g~~m~~ld---- 320 (632)
++.+|+++|++.+++.. ..+.+++++..+|+||..+|.+ |+++|+++|+++++|.+.. ++. ..++
T Consensus 183 ~~~~~d~e~l~~~l~~~~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~--~~~~~~~~ 257 (448)
T 3meb_A 183 GELEIDFSNTKKDIQSAP---EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFAT--GSFEADAF 257 (448)
T ss_dssp SCSSBCHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSS--SCHHHHTH
T ss_pred cCCCcCHHHHHHHHHhCC---CCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccC--CCcccCch
Confidence 47899999999998521 2358899999999999999855 5678899999999999844 332 1211
Q ss_pred -C----CCCCCcEEEEccccccCCCCCc--eEEE
Q 006746 321 -L----SLVRPDFLICSFYQIFGENPSG--FGCL 347 (632)
Q Consensus 321 -l----s~~~~Df~~~S~hK~~G~~P~G--~G~L 347 (632)
+ ....-.+++.|++|.|| +.| +|++
T Consensus 258 ~~~~~~~~~~~~i~~~S~SK~~g--~~G~RiG~l 289 (448)
T 3meb_A 258 AVRMFVDAGVEVLVAQSFSKNFG--LYGERIGCL 289 (448)
T ss_dssp HHHHHHHTTCCEEEEEECTTTSC--CGGGCCEEE
T ss_pred hHHHHhhcCCcEEEEecccccCC--Cccccceee
Confidence 1 11223477999999999 557 6777
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=170.75 Aligned_cols=331 Identities=11% Similarity=0.094 Sum_probs=207.0
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|+|+++. |.-++.+++++.+.+... +.. .+ . | ..+...+.+++++
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~--------~~~---------~~---~--~---~~~~~~~l~~~la 91 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKF--------WHT---------GN---G--Y---TNEPVLRLAKKLI 91 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC--------SCC---------CT---T--S---CCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhc--------ccc---------cC---C--c---CCHHHHHHHHHHH
Confidence 56779999876 233778888876544321 000 00 0 1 1245678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCC------CC-CeEE-EeccccchhhHHHHHHHHh---------cCCEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFM------SV-KNLL-TVYDYESEAVEAMIRTSEK---------RGARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~------~g-d~il-t~~d~~s~~v~~~~~~a~~---------~G~~v~ 243 (632)
++++.+ .|+||+|+|+|+.+++..+-.. +| ++|+ ....||......+ ..... .+.++.
T Consensus 92 ~~~~~~----~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (406)
T 4adb_A 92 DATFAD----RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTV-SAGGQPAYSQDFAPLPADIR 166 (406)
T ss_dssp HHSSCS----EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHH-HHSSCGGGTGGGCSCCSSEE
T ss_pred hhCCCC----eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHh-hccCCccccccCCCCCCCce
Confidence 999864 6999999999999998876210 45 7765 4556665322221 11100 013444
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcccc-----chH-HHHHHhhCCcEEEEecccc-CCCC-
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-----PYL-WMRIAQENDWHILIDACAL-GPKD- 315 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~-----pl~-i~~~a~~~g~~vlvDaaq~-~g~~- 315 (632)
.++. .|+++|++++++ ++++|++. ..|.||..+ +++ |.++|+++|+++++|.++. ++..
T Consensus 167 ~~~~------~d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g 233 (406)
T 4adb_A 167 HAAY------NDINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG 233 (406)
T ss_dssp EECT------TCHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred EeCC------CcHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 4443 368888887764 35888888 457777654 578 8999999999999999985 2211
Q ss_pred -CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchh
Q 006746 316 -MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 394 (632)
Q Consensus 316 -m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 394 (632)
...++.....+|++ +++|.+| +...+|+++++++.++.+.+...+++ |
T Consensus 234 ~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~----------~------------------ 282 (406)
T 4adb_A 234 ELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLATEECARVMTVGTHGTT----------Y------------------ 282 (406)
T ss_dssp SSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEECHHHHHTCCTTSSCCS----------S------------------
T ss_pred hhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEEcHHHHhhhccCCcCCC----------C------------------
Confidence 01112223457877 5699888 23349999999887766654321100 0
Q ss_pred hhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHH
Q 006746 395 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 474 (632)
Q Consensus 395 ~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~ 474 (632)
. .+.....+.. ++|+.+. .+.+.++.+.+.
T Consensus 283 -----------~------------~~~~~~~a~~------------------------~~l~~~~---~~~~~~~~~~~~ 312 (406)
T 4adb_A 283 -----------G------------GNPLASAVAG------------------------KVLELIN---TPEMLNGVKQRH 312 (406)
T ss_dssp -----------T------------TCHHHHHHHH------------------------HHHHHHS---SHHHHHHHHHHH
T ss_pred -----------C------------CCHHHHHHHH------------------------HHHHHHH---hcCHHHHHHHHH
Confidence 0 0001111111 4555443 378888999999
Q ss_pred HHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHH
Q 006746 475 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK 554 (632)
Q Consensus 475 ~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~ 554 (632)
+++.+.|.++... .+.+. . ....+.++.|.+.+... .+...+.+.+.++||.++.+
T Consensus 313 ~~l~~~l~~~~~~----~~~~~---~--~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~------------- 368 (406)
T 4adb_A 313 DWFVERLNTINHR----YGLFS---E--VRGLGLLIGCVLNADYA--GQAKQISQEAAKAGVMVLIA------------- 368 (406)
T ss_dssp HHHHHHHHHHHHH----HCCEE---E--EEEETTEEEEEECTTTT--TCHHHHHHHHHHTTEECEES-------------
T ss_pred HHHHHHHHHHHHh----CCCce---E--EEEEEEEEEEEEeCCcH--HHHHHHHHHHHHCCcEEeec-------------
Confidence 9999999876210 01111 1 01246788888865211 14555665555669988643
Q ss_pred hhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 555 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 555 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+.+.||+++++.+|.+||+++++.|+++++.
T Consensus 369 ---------------------------~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 369 ---------------------------GGNVVRFAPALNVSEEEVTTGLDRFAAACEH 399 (406)
T ss_dssp ---------------------------STTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2369999999999999999999999998764
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=175.03 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=138.6
Q ss_pred ceEeecCCC---CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC
Q 006746 109 HTCLDYFGI---GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 109 ~vyLD~ag~---gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
.+| |+++. .+.|+.+++++..+ .++. ...+++++.+++++|+
T Consensus 29 ~v~-~~~~~~~~~~~~~~v~~a~~~~------------------------~~~~----------~~~~~~~~~~a~~~g~ 73 (374)
T 2aeu_A 29 ALY-DLSGLSGGFLIDEKDKALLNTY------------------------IGSS----------YFAEKVNEYGLKHLGG 73 (374)
T ss_dssp GCE-ECSSCCCCCCCCHHHHHHHTST------------------------THHH----------HHHHHHHHHHHHHHTC
T ss_pred cee-eecccCCCCCCCHHHHHHHHHh------------------------cCch----------HHHHHHHHHHHHHhCC
Confidence 578 88864 48889999987521 1221 2235677777899999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 264 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~ 264 (632)
++. ..+++|+|+|+|+.+++.++ +||+|++. ..|++ ....+ +.++..|++++.+ .|+++|+++ +
T Consensus 74 ~~~-~~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~-~~~~~-~~~~~~g~~~~~v--------~d~~~l~~~-~ 138 (374)
T 2aeu_A 74 DEN-DKCVGFNRTSSAILATILAL---KPKKVIHYLPELPG-HPSIE-RSCKIVNAKYFES--------DKVGEILNK-I 138 (374)
T ss_dssp CTT-EEEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSC-CTHHH-HHHHHTTCEEEEE--------SCHHHHHTT-C
T ss_pred CCc-ceEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCc-cHHHH-HHHHHcCcEEEEe--------CCHHHHHhc-C
Confidence 521 26899999999999999987 89997654 45554 23332 3567789999877 267787766 3
Q ss_pred hcCcCCCceeE-EEEeccCCCCc-cccchH-HHHHHhhCCcEEEEeccccCCCCCCCC-C--CCCCCCcEEEEccccccC
Q 006746 265 SKGKKKKQRGL-FVFPLHSRMTG-ARYPYL-WMRIAQENDWHILIDACALGPKDMDSF-G--LSLVRPDFLICSFYQIFG 338 (632)
Q Consensus 265 ~~~~~~~~~~L-v~~~~~sn~TG-~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~l-d--ls~~~~Df~~~S~hK~~G 338 (632)
+ ++++ +++++.+|+|| ...|++ |.++|+++|+++++|.++..... .+. . .-.+++|+++.|++|+++
T Consensus 139 ~------~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~di~~~S~sK~l~ 211 (374)
T 2aeu_A 139 D------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVR-LLFNQPPALKLGADLVVTSTDKLME 211 (374)
T ss_dssp C------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH-HHTTCCCHHHHTCSEEEEETTSSSS
T ss_pred C------CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccc-cccccCCccccCCcEEEecCccccc
Confidence 2 3588 99999999999 889999 99999999999999998654320 000 0 112578999999999776
Q ss_pred CCCCceEEEEEeCCCccccC
Q 006746 339 ENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 339 ~~P~G~G~L~Vr~~~~~~L~ 358 (632)
. | ++|+++.+++.++.+.
T Consensus 212 g-~-~~G~~~~~~~~~~~l~ 229 (374)
T 2aeu_A 212 G-P-RGGLLAGKKELVDKIY 229 (374)
T ss_dssp S-C-SCEEEEEEHHHHHHHH
T ss_pred C-c-ceEEEEECHHHHHHHH
Confidence 3 5 8999999987765443
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=165.14 Aligned_cols=216 Identities=14% Similarity=0.072 Sum_probs=140.8
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc---
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--- 183 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l--- 183 (632)
.--.|+|..+..+.+..+.+++....... ...|+... -..+.|+.+++++
T Consensus 44 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-------------------------~~~y~~~~--g~~~lr~~ia~~~~~~ 96 (418)
T 3rq1_A 44 TLGAIHDEEGNLVFLKTVKEEYLSLSDSE-------------------------HVGYAPIA--GIPDFLCAAEKECFGN 96 (418)
T ss_dssp CSSCCBCTTSCBCCCHHHHHHHHTCCHHH-------------------------HHSCCCTT--CCHHHHHHHHHHHHGG
T ss_pred CCCcccCCCCCccccHHHHHHHHHhcccc-------------------------cCCCCCCC--ChHHHHHHHHHHHhcc
Confidence 34557777778888888888876532100 00011100 0135677777765
Q ss_pred -CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHH
Q 006746 184 -NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 261 (632)
Q Consensus 184 -~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~ 261 (632)
+.+. ...|++|+|+|+|+.+++.++ .++||+|++.. .|++ ....++..|++++.++.+.+++.+|+++|++
T Consensus 97 ~~~~~-~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~ 169 (418)
T 3rq1_A 97 FRPEG-HIRSIATAGGTGGIHHLIHNY-TEPGDEVLTADWYWGA-----YRVICSDTGRTLVTYSLFDEHNNFNHEAFQN 169 (418)
T ss_dssp GCCSS-EEEEEEESHHHHHHHHHHHHH-SCTTCEEEEESSCCTH-----HHHHHHHTTCEEEEECSBCTTSSBCHHHHHH
T ss_pred cCccc-cccEEECCchHHHHHHHHHHh-cCCCCEEEECCCCchh-----HHHHHHHcCCEEEEEeeeCCCCCcCHHHHHH
Confidence 3221 226999999999999999998 78999987654 4442 2345677899999999865556799999999
Q ss_pred HHHhcCcCCCceeEEEEecc-CCCCccccchH-HHHHH---h------hCCcEEEEeccccC-CCC---CCCC--CCCCC
Q 006746 262 MVVSKGKKKKQRGLFVFPLH-SRMTGARYPYL-WMRIA---Q------ENDWHILIDACALG-PKD---MDSF--GLSLV 324 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~-sn~TG~~~pl~-i~~~a---~------~~g~~vlvDaaq~~-g~~---m~~l--dls~~ 324 (632)
++++... .+...+++++.. +|+||..+|.+ |.+++ + ++|+++++|.++.. ..+ ..++ .....
T Consensus 170 ~l~~~~~-~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 248 (418)
T 3rq1_A 170 RVNELAA-KQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHL 248 (418)
T ss_dssp HHHHHHH-HCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTC
T ss_pred HHHHhhc-cCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhc
Confidence 9975200 001247888877 89999999987 66554 4 89999999998532 110 0011 11222
Q ss_pred CCc---EEEEccccccCCCCCceEEEEE---eCCCcccc
Q 006746 325 RPD---FLICSFYQIFGENPSGFGCLFV---KKSTVPIL 357 (632)
Q Consensus 325 ~~D---f~~~S~hK~~G~~P~G~G~L~V---r~~~~~~L 357 (632)
..| +++.|++|.+|.+...+|+++. +++.++.+
T Consensus 249 ~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 287 (418)
T 3rq1_A 249 PKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEF 287 (418)
T ss_dssp CTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHH
T ss_pred CCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHH
Confidence 345 7888999998842234688887 55554433
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-17 Score=173.75 Aligned_cols=335 Identities=10% Similarity=-0.022 Sum_probs=211.6
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHc-CC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l-~a 185 (632)
..-.|+|..+....++.+.+++.+.+..... ...|+.. .-..+.|+.|++++ +.
T Consensus 36 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----------------------~~~y~~~--~g~~~lr~~la~~~~~~ 90 (412)
T 1ajs_A 36 GVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-----------------------NHEYLPI--LGLAEFRTCASRLALGD 90 (412)
T ss_dssp CSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-----------------------CCCCCCT--TCCHHHHHHHHHHHHCT
T ss_pred ccceecCCCCCccccHHHHHHHHHhhhChhh-----------------------ccCCCCC--CCCHHHHHHHHHHHhcC
Confidence 4456777777777788888887654311000 0001110 11247899999999 53
Q ss_pred -----CCCCccEEE--eCCHHHHHHHHHhhCC-CCCC-----CeEEEe-ccccchhhHHHHHHHHhcCCE-EEEEeccC-
Q 006746 186 -----SENDYGMVF--TANRTSAFKLLAESYP-FMSV-----KNLLTV-YDYESEAVEAMIRTSEKRGAR-VMSAEFSW- 249 (632)
Q Consensus 186 -----~~~ey~vvf--t~naT~al~lv~~sl~-~~~g-----d~ilt~-~d~~s~~v~~~~~~a~~~G~~-v~~v~~~~- 249 (632)
+++ .|+| |+|+|+|+.+++..+. +.+| |+|++. ..|++ ....++..|++ ++.++.+.
T Consensus 91 ~~~~~~~~--~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~-----~~~~~~~~g~~~~~~~~~~~~ 163 (412)
T 1ajs_A 91 DSPALQEK--RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN-----HNGVFTTAGFKDIRSYRYWDT 163 (412)
T ss_dssp TCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH-----HHHHHHHTTCSCEEEEECEET
T ss_pred CCCccCCC--cEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHH-----HHHHHHHcCCceeEEEeeecC
Confidence 544 6999 9999999999965321 4678 887654 46653 23455678999 99998842
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc-CCCC-----CCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL-GPKD-----MDSF 319 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~-~g~~-----m~~l 319 (632)
.+..+++++|++++.+.. .++.++++++.+|+||..+|.+ |+++|+++|+++++|.++. ++.. ..++
T Consensus 164 ~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~ 240 (412)
T 1ajs_A 164 EKRGLDLQGFLSDLENAP---EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAI 240 (412)
T ss_dssp TTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred CCCccCHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHH
Confidence 345689999999997521 2357888999999999998754 6788999999999999843 3221 0012
Q ss_pred C-CCCC-CCcEEEEccccccCCCCCc--eEEEEE---eCCCccccCCCCCCCceeecccccccccccccCCCCCCccccc
Q 006746 320 G-LSLV-RPDFLICSFYQIFGENPSG--FGCLFV---KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 392 (632)
Q Consensus 320 d-ls~~-~~Df~~~S~hK~~G~~P~G--~G~L~V---r~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 392 (632)
. +... +-++++.|++|.+| |.| +|++++ +++.++.+.... .
T Consensus 241 ~~~~~~~~~~i~~~s~sK~~~--~~G~riG~~~~~~~~~~~~~~~~~~~-----------~------------------- 288 (412)
T 1ajs_A 241 RYFVSEGFELFCAQSFSKNFG--LYNERVGNLTVVAKEPDSILRVLSQM-----------Q------------------- 288 (412)
T ss_dssp HHHHHTTCCEEEEEECTTTSC--CGGGCEEEEEEECSSHHHHHHHHHHH-----------H-------------------
T ss_pred HHHhccCCcEEEEEecccccC--CCCcceEEEEEecCCHHHHHHHHHHH-----------H-------------------
Confidence 1 1111 22489999999999 768 799998 554322111000 0
Q ss_pred hhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHH-----hhCHHHHH
Q 006746 393 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD-----SLGLTMIS 467 (632)
Q Consensus 393 ~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~-----~~Gl~~I~ 467 (632)
... ..+ + ++++.+...++. ++|+... ...++.+.
T Consensus 289 -~~~---~~~--~-----------~~~~~~~~~a~~------------------------~~l~~~~~~~~~~~~~~~~~ 327 (412)
T 1ajs_A 289 -KIV---RVT--W-----------SNPPAQGARIVA------------------------RTLSDPELFHEWTGNVKTMA 327 (412)
T ss_dssp -HHH---HTT--T-----------SSCCSHHHHHHH------------------------HHHHSHHHHHHHHHHHHHHH
T ss_pred -HHH---hcc--c-----------CCCChHHHHHHH------------------------HHHcCcchhHHHHHHHHHHH
Confidence 000 000 0 001111122222 4454331 12468888
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCC-cEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 468 RRGRCLINWLVNALMKLQHPNTEGNA-LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 468 ~r~~~L~~~L~~~L~~l~h~~~~G~p-~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
++.+.+.++|.+.|.++ |.| .++++.| .++.+.| .+ ++...+.+++.++||.++.
T Consensus 328 ~~~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~--~~-----~~~~~~~~~l~~~gv~v~~------ 383 (412)
T 1ajs_A 328 DRILSMRSELRARLEAL------KTPGTWNHITD-----QIGMFSF--TG-----LNPKQVEYLINQKHIYLLP------ 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHT------TCSSCCHHHHH-----CCSSEEE--CC-----CCHHHHHHHHHTTCEECCT------
T ss_pred HHHHHHHHHHHHHHHhh------CCCCCeeEEcC-----CCceEEE--eC-----CCHHHHHHHHHhCCEEecC------
Confidence 99999999999999987 211 2333322 3444443 23 4466777888888988741
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+|+|++. .+.+|++++++.|+++++.
T Consensus 384 --------------------------------------~~Ris~~~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 384 --------------------------------------SGRINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp --------------------------------------TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred --------------------------------------CcEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence 25999985 4899999999999988753
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=173.95 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=121.3
Q ss_pred HHHHHHHHHHc-CC--CCCCccEEE--eCCHHHHHHHHHhhCC-CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL-NI--SENDYGMVF--TANRTSAFKLLAESYP-FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l-~a--~~~ey~vvf--t~naT~al~lv~~sl~-~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.|++++ +. +++ .|+| |+|+|+|+.+++..+. +.+||+|++. ..|++ ....++..|++++.+
T Consensus 72 ~~lr~~la~~~~~~~~~~~--~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~-----~~~~~~~~g~~~~~~ 144 (394)
T 2ay1_A 72 PEFQKAMGELILGDGLKSE--TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPN-----HVSIMNFMGLPVQTY 144 (394)
T ss_dssp HHHHHHHHHHHHGGGCCGG--GEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHH-----HHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHhCCCCCcc--cEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChh-----HHHHHHHcCCceEEE
Confidence 47899999987 55 444 7999 9999999999987763 3589997654 45553 234456789999999
Q ss_pred eccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCC-----
Q 006746 246 EFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKD----- 315 (632)
Q Consensus 246 ~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~----- 315 (632)
+.+. .++.++.+++++++++.. ..+.++++++.+|+||..+|.+ |+++|+++|+++++|.++.....
T Consensus 145 ~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 221 (394)
T 2ay1_A 145 RYFDAETRGVDFEGMKADLAAAK---KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEED 221 (394)
T ss_dssp ECEETTTTEECHHHHHHHHHTCC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHH
T ss_pred ecccccCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccc
Confidence 8852 345689999999997531 2357888999999999999754 57889999999999999875320
Q ss_pred CCCCC-CCCCCC-cEEEEccccccCCCCCce--EEEEE
Q 006746 316 MDSFG-LSLVRP-DFLICSFYQIFGENPSGF--GCLFV 349 (632)
Q Consensus 316 m~~ld-ls~~~~-Df~~~S~hK~~G~~P~G~--G~L~V 349 (632)
..++. +...+. ++++.|++|.+| +.|+ |++++
T Consensus 222 ~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~riG~~~~ 257 (394)
T 2ay1_A 222 AAGTRLIASRIPEVLIAASCSKNFG--IYRERTGCLLA 257 (394)
T ss_dssp HHHHHHHHHHCSSEEEEEECTTTTT--CGGGCEEEEEE
T ss_pred hHHHHHHhhcCCCEEEEEeccCCCc--CcCCccceEEE
Confidence 01122 222233 477889999999 5575 99998
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-17 Score=174.00 Aligned_cols=285 Identities=9% Similarity=0.013 Sum_probs=186.1
Q ss_pred HHHHHHHHHHcCC-----CCCCccEEEeCCHHHHHHHHHhhCCCCCCC----eEEEec-cccchhhHHHHHHHHhcCCEE
Q 006746 173 SAMKKRIMDFLNI-----SENDYGMVFTANRTSAFKLLAESYPFMSVK----NLLTVY-DYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 173 ~~~R~~ia~~l~a-----~~~ey~vvft~naT~al~lv~~sl~~~~gd----~ilt~~-d~~s~~v~~~~~~a~~~G~~v 242 (632)
.+.|+.|+++++. +++ .+|++|+|+++|+.+++.++ .++|| +|++.. .|++ ....++..|+++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~-~~i~~t~G~~~al~~~~~~l-~~~Gd~~~~~Vlv~~P~y~~-----~~~~~~~~g~~~ 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATED-RYIVVGTGSTQLCQAAVHAL-SSLARSQPVSVVAAAPFYST-----YVEETTYVRSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSS-SEEEEEEHHHHHHHHHHHHH-HHTSSSSSEEEEECSSCCTH-----HHHHHHTTCBTT
T ss_pred HHHHHHHHHHHHhcCCCCCCC-CeEEEeCChHHHHHHHHHHh-cCCCCCCcceEEEcCCCchh-----HHHHHHHcCCeE
Confidence 4789999998873 232 27999999999999999998 67899 877654 5542 234567789999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLS 322 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls 322 (632)
+.++++... +. . +++++++++..+|+||..++ +|++.++.+++++++|.++..+. ..++..
T Consensus 144 ~~~~~d~~~--l~--------~------~~~k~v~l~~p~NPtG~~~~-~l~~~~~~~~~~ii~De~y~~~~-~~~l~~- 204 (391)
T 3bwn_A 144 YKWEGDAWG--FD--------K------KGPYIELVTSPNNPDGTIRE-TVVNRPDDDEAKVIHDFAYYWPH-YTPITR- 204 (391)
T ss_dssp EEEEEESTT--CC--------C------CSCEEEEEESSCTTTCCCCC-CCC-----CCCEEEEECTTCSTT-TSCCCC-
T ss_pred EEecCCHHH--cC--------C------CCCEEEEECCCCCCCchhHH-HHHHHhhcCCCEEEEeCCCCCCC-CCcccc-
Confidence 888876322 11 1 13589999999999999997 56553344459999999987542 134443
Q ss_pred CCCCcEEEEccccccCCCCCce--EEEEE-eCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 323 LVRPDFLICSFYQIFGENPSGF--GCLFV-KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~--G~L~V-r~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
..+.++++.|++|.|| ++|+ |++++ ++++++.+..... . .
T Consensus 205 ~~~~~i~~~S~SK~~g--~~GlRiG~~~~~~~~l~~~l~~~~~--------------------------------~---~ 247 (391)
T 3bwn_A 205 RQDHDIMLFTFSKITG--HAGSRIGWALVKDKEVAKKMVEYII--------------------------------V---N 247 (391)
T ss_dssp CBCCSEEEEEHHHHHS--CGGGCEEEEEECCHHHHHHHHHHHH--------------------------------H---H
T ss_pred CCCCeEEEEechhhcC--CCccceEEEEecCHHHHHHHHHHhc--------------------------------c---c
Confidence 4567899999999999 5586 99998 5555443322100 0 0
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHH---------hhCHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD---------SLGLTMISRRG 470 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~---------~~Gl~~I~~r~ 470 (632)
..+ .+.+...++. .+|+... +..++.+.++.
T Consensus 248 ~~~----------------~~~~~q~a~~------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 287 (391)
T 3bwn_A 248 SIG----------------VSKESQVRTA------------------------KILNVLKETCKSESESENFFKYGREMM 287 (391)
T ss_dssp HSS----------------CCHHHHHHHH------------------------HHHHHHHHHTTCCCTTTSHHHHHHHHH
T ss_pred ccC----------------CCHHHHHHHH------------------------HHHhCcchhccccccHHHHHHHHHHHH
Confidence 000 0111111111 3444321 22367788889
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC---------CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccC
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIR---------FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG 541 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~---------~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G 541 (632)
+...+++.+.|.++ |.+++..|... ...|..+.+.+.+ .+.+.++++++||.++.|
T Consensus 288 ~~~~~~l~~~L~~~--------~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~-------~~~~~~~l~~~gV~v~pg 352 (391)
T 3bwn_A 288 KNRWEKLREVVKES--------DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE-------ETDLVSELRRHKVMSRAG 352 (391)
T ss_dssp HHHHHHHHHHHHTC--------SSEECCCCCCEEETTTTEEECCCCSEEEEEESS-------SCCHHHHHHHTTEECEEG
T ss_pred HHHHHHHHHHHHhC--------CCcccccCCccccccccccCCCcceEEEecCCc-------HHHHHHHHHHCCEEEccC
Confidence 99999999999886 45777655321 0122345556553 135677888899999987
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..|.. +.+.||+|++ ++.++++++++.|+++++.
T Consensus 353 ~~fg~-----------------------------------~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 353 ERCGS-----------------------------------DKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp GGGTC-----------------------------------CTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred CCCCC-----------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 54310 2368999999 4899999999999887643
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=163.73 Aligned_cols=165 Identities=8% Similarity=0.057 Sum_probs=124.9
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHH-HHhcCC
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRT-SEKRGA 240 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~-a~~~G~ 240 (632)
.|+.......++.+++++++.|++ .+++++|+++|+.++ ..+ .++||+|++. ..|++ ....+... .++.|+
T Consensus 60 ~y~r~~~p~~~~l~~~la~l~g~~----~~~~~~sG~~Ai~~~-~~l-~~~gd~Vi~~~~~y~~-~~~~~~~~~~~~~g~ 132 (400)
T 3nmy_A 60 EYSRTHNPTRFAYERCVAALEGGT----RAFAFASGMAATSTV-MEL-LDAGSHVVAMDDLYGG-TFRLFERVRRRTAGL 132 (400)
T ss_dssp CBTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHH-HTT-SCTTCEEEEESSCCHH-HHHHHHHTHHHHHCC
T ss_pred ccccCCCHHHHHHHHHHHHHhCCC----CEEEecCHHHHHHHH-HHH-cCCCCEEEEeCCCchH-HHHHHHHhhHhhcCe
Confidence 355545567789999999999985 366677779999985 445 6889997755 45654 34444444 667899
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCC
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSF 319 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~l 319 (632)
+++.++.+ ++++|+++|+++ +++|.+...+|+||...|++ |.++|+++|+++++|.++..|....++
T Consensus 133 ~~~~v~~~------d~~~l~~~i~~~------~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~ 200 (400)
T 3nmy_A 133 DFSFVDLT------DPAAFKAAIRAD------TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL 200 (400)
T ss_dssp EEEEECTT------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGG
T ss_pred EEEEECCC------CHHHHHHHhccC------CCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh
Confidence 99988764 678999888754 58999999999999999999 999999999999999998754311244
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEE-EEE
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGC-LFV 349 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~-L~V 349 (632)
+ +++|+++.|++|++|.+...+|. +++
T Consensus 201 ~---~g~div~~S~sK~l~g~g~~~gG~~vv 228 (400)
T 3nmy_A 201 S---LGADLVVHSATKYLNGHSDMVGGIAVV 228 (400)
T ss_dssp G---GTCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred h---cCCcEEEecCccccCCCCCcceeEEEE
Confidence 3 47899999999988742123555 444
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=174.81 Aligned_cols=312 Identities=11% Similarity=0.037 Sum_probs=205.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
...+.++++++|++||++ ..+++++++|.|+..+..++ .++||+|+++. .|.| ... .++..|+++++++.
T Consensus 194 ~g~i~eaE~~lA~~fGa~---~a~~v~nGts~An~~ai~al-~~pGD~VLv~r~~H~S-~~~----~l~lsGa~pv~v~~ 264 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNAD---RSYMVTNGTSTANKIVGMYS-APAGSTILIDRNCHKS-LTH----LMMMSDVTPIYFRP 264 (715)
T ss_dssp BTHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHH-HHH----HHHHSCCEEEEECC
T ss_pred cHHHHHHHHHHHHHhCCC---CceEECcHHHHHHHHHHHHh-CCCCCEEEECCCccHH-HHH----HHHHcCCEEEEEec
Confidence 367889999999999996 25666666679998888888 78999987665 5544 333 34568999999987
Q ss_pred cCCccc----c-----CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCC
Q 006746 248 SWPRLR----I-----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMD 317 (632)
Q Consensus 248 ~~~~~~----i-----~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~ 317 (632)
++.+.. + +.++|+++|.++++ .+.++++++++. |.+|..+|++ |+++|+.++ +++|.|+..+....
T Consensus 265 ~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~ 340 (715)
T 3n75_A 265 TRNAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFS 340 (715)
T ss_dssp CBCTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGS
T ss_pred cccccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccC
Confidence 533222 3 89999999986431 112347888887 8999999999 999998663 78999987652101
Q ss_pred CC--CCCCC----CCcEE---EEccccccCCCCCceEEEEEeCCCcc-ccCCCCCCCceeecccccccccccccCCCCCC
Q 006746 318 SF--GLSLV----RPDFL---ICSFYQIFGENPSGFGCLFVKKSTVP-ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE 387 (632)
Q Consensus 318 ~l--dls~~----~~Df~---~~S~hK~~G~~P~G~G~L~Vr~~~~~-~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e 387 (632)
+. +.+.. .+|++ +.|+||.+|. |++.|++.++++... .++. .
T Consensus 341 ~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~---------------~------------ 392 (715)
T 3n75_A 341 PIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNE---------------A------------ 392 (715)
T ss_dssp GGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHH---------------H------------
T ss_pred CccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHH---------------H------------
Confidence 11 12211 26766 9999997775 889999999876210 0000 0
Q ss_pred ccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh-hCHHHH
Q 006746 388 PEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMI 466 (632)
Q Consensus 388 ~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~-~Gl~~I 466 (632)
..+ ..+++++.+.+.++. .|++++.. .| ..+
T Consensus 393 -----~~~------------------~~STSpsy~~~Asld------------------------aA~~~~~~~~g-~~~ 424 (715)
T 3n75_A 393 -----YMM------------------HTTTSPHYGIVASTE------------------------TAAAMMKGNAG-KRL 424 (715)
T ss_dssp -----HHH------------------TSCSSCCHHHHHHHH------------------------HHHHHHSHHHH-HHH
T ss_pred -----HHh------------------hcCCCchHHHHHHHH------------------------HHHHHHHhhcc-HHH
Confidence 000 013445666677776 78888764 34 457
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCC-------------------C------CcEEEEEEcc--CCC
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD-------------------R------GPALAFNVFD--WKR 519 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~-------------------r------g~ivaFnv~~--~~G 519 (632)
.+++..++.+++++|.+++... +| --+++++|..-.. . ..=+++++.+ .+|
T Consensus 425 ~~~l~~~a~~~r~~L~~i~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G 502 (715)
T 3n75_A 425 INGSIERAIKFRKEIKRLRTES-DG-WFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDG 502 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-SS-CCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhhc-cc-ceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCC
Confidence 7899999999999999883100 00 0145555431000 0 1113444443 233
Q ss_pred C----ccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCC
Q 006746 520 E----KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLAN 595 (632)
Q Consensus 520 ~----~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t 595 (632)
. -++...+++.++++||.+-- .....|=+=+...+|
T Consensus 503 ~~~~~Gi~g~~~~~~L~~~~I~~E~----------------------------------------~d~~~vl~l~s~g~~ 542 (715)
T 3n75_A 503 TMSDFGIPASIVAKYLDEHGIVVEK----------------------------------------TGPYNLLFLFSIGID 542 (715)
T ss_dssp CBCSSCCCHHHHHHHHHHTTCCCSE----------------------------------------EETTEEEEECCTTCC
T ss_pred ccccCCCcHHHHHHHHHHCCCEEEe----------------------------------------cCCCcEEEEeCCCCC
Confidence 2 36777788877777776521 123456666778899
Q ss_pred HHHHHHHHHHHHHhhh
Q 006746 596 FEDVYRLWAFVAQFLD 611 (632)
Q Consensus 596 ~eDV~rlv~~l~~~l~ 611 (632)
.+++++|+++|.+|-.
T Consensus 543 ~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 543 KTKALSLLRALTDFKR 558 (715)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-17 Score=174.57 Aligned_cols=205 Identities=13% Similarity=0.064 Sum_probs=141.3
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC-
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI- 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a- 185 (632)
..-.|+|..+..+.++.+.+++.+.+.... ...|+. ..-..+.|+.|+++++.
T Consensus 32 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~------------------------~~~y~~--~~g~~~lr~~la~~~~~~ 85 (396)
T 2q7w_A 32 GIGVYKDETGKTPVLTSVKKAEQYLLENET------------------------TKNYLG--IDGIPEFGRCTQELLFGK 85 (396)
T ss_dssp SCCSCCCTTSCCCCCHHHHHHHHHHHHHCC------------------------CCCCCC--TTCCHHHHHHHHHHHHCT
T ss_pred ccccccCCCCCccCcHHHHHHHHhhcCccc------------------------ccCCCC--CCCCHHHHHHHHHHHhcC
Confidence 445678877777788888888755321100 000110 01124789999998832
Q ss_pred -----CCCCccEEE--eCCHHHHHHHHHhhCC-CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC-CccccC
Q 006746 186 -----SENDYGMVF--TANRTSAFKLLAESYP-FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW-PRLRIN 255 (632)
Q Consensus 186 -----~~~ey~vvf--t~naT~al~lv~~sl~-~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~-~~~~i~ 255 (632)
+++ .|+| |+|+|+|+.+++..+. +.+||+|++. ..|++ ....++..|++++.++.+. .+..++
T Consensus 86 ~~~~~~~~--~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~-----~~~~~~~~g~~~~~~~~~~~~~~~~d 158 (396)
T 2q7w_A 86 GSALINDK--RARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN-----HKSVFNSAGLEVREYAYYDAENHTLD 158 (396)
T ss_dssp TCHHHHTT--CEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH-----HHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred CCCccccc--cEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchh-----HHHHHHHcCCceEEEecccCCCCCcC
Confidence 344 6888 9999999999987653 4689997654 45553 2344567899999998842 345689
Q ss_pred HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCC-----CCCCCC-CCCC-
Q 006746 256 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPK-----DMDSFG-LSLV- 324 (632)
Q Consensus 256 ~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~-----~m~~ld-ls~~- 324 (632)
.++|++.+.+.+ .+++++++++.+|+||..+|.+ |+++|+++|+++++|.++.... ...++. +...
T Consensus 159 ~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 235 (396)
T 2q7w_A 159 FDALINSLNEAQ---AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMH 235 (396)
T ss_dssp HHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHC
T ss_pred HHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcC
Confidence 999999997531 2358899999999999998754 6788999999999999876421 000121 1111
Q ss_pred CCcEEEEccccccCCCCCc--eEEEEE
Q 006746 325 RPDFLICSFYQIFGENPSG--FGCLFV 349 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G--~G~L~V 349 (632)
..++++.|++|.+| +.| +|++++
T Consensus 236 ~~~i~~~s~sK~~~--~~G~riG~~~~ 260 (396)
T 2q7w_A 236 KELIVASSYSXNFG--LYNERVGACTL 260 (396)
T ss_dssp SCEEEEEECTTTTT--CGGGCCEEEEE
T ss_pred CcEEEEEecccccc--ccccccceEEE
Confidence 34688999999999 668 599987
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=162.83 Aligned_cols=208 Identities=15% Similarity=0.111 Sum_probs=142.0
Q ss_pred CCceEeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~-~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a 185 (632)
.--+|+|+.+..+.++.+++++.+ .+..... + .| ... .| ..+.|+.++++++.
T Consensus 32 ~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~-----------~--~y--~~~-----~g------~~~lr~~la~~~~~ 85 (397)
T 3fsl_A 32 SIGLYYNEDGIIPQLQAVAEAEARLNAQPHGA-----------S--LY--LPM-----EG------LNCYRHAIAPLLFG 85 (397)
T ss_dssp SSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCC-----------C--CC--CCT-----TC------CHHHHHHHHHHHHC
T ss_pred eeeEEECCCCCccCcHHHHHHHHhhccCcccc-----------c--cC--CCC-----Cc------hHHHHHHHHHHHhc
Confidence 335688888888888999998776 4432100 0 00 000 01 23688888888865
Q ss_pred ------CCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc-CCccccCH
Q 006746 186 ------SENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS-WPRLRINS 256 (632)
Q Consensus 186 ------~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~-~~~~~i~~ 256 (632)
+++...|+||+|+|+|++++++.+. +++||+|++.. .|++ ....++..|++++.++.. ..++.+|.
T Consensus 86 ~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~d~ 160 (397)
T 3fsl_A 86 ADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWEN-----HVAIFAGAGFEVSTYPWYDEATNGVRF 160 (397)
T ss_dssp TTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHH-----HHHHHHHTTCCEEEECCEETTTTEECH
T ss_pred CCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchh-----HHHHHHHcCCceEEEeeeeccCCcCcH
Confidence 3332269999999999999964321 57899977654 4442 234567789999999883 24567899
Q ss_pred HHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCC-----CCCC-CC-CCCC
Q 006746 257 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKD-----MDSF-GL-SLVR 325 (632)
Q Consensus 257 ~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~-----m~~l-dl-s~~~ 325 (632)
++|++.+.+. +.++++++++..+|+||..+|.+ |+++|+++|+++++|.+...... ..++ .+ ...+
T Consensus 161 ~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
T 3fsl_A 161 NDLLATLKTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGL 237 (397)
T ss_dssp HHHHHHHTTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTC
T ss_pred HHHHHHHHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCC
Confidence 9999999742 12468999999999999997654 67788999999999998654220 0000 01 1234
Q ss_pred CcEEEEccccccCCCCCc--eEEEEEe
Q 006746 326 PDFLICSFYQIFGENPSG--FGCLFVK 350 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G--~G~L~Vr 350 (632)
.++++.|+.|.+| +.| +|++++.
T Consensus 238 ~~i~~~S~SK~~~--~~G~riG~~~~~ 262 (397)
T 3fsl_A 238 PALVSNSFSKIFS--LYGERVGGLSVM 262 (397)
T ss_dssp CEEEEEECTTTTT--CGGGCCEEEEEE
T ss_pred CEEEEeccccccc--CcCCCeeEEEEe
Confidence 5688999999999 557 6877763
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-16 Score=166.68 Aligned_cols=214 Identities=11% Similarity=0.040 Sum_probs=154.8
Q ss_pred hhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHH
Q 006746 99 KEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR 178 (632)
Q Consensus 99 ~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ 178 (632)
.+|+.+ ++.++.|. ..+++++...... + .+ .+.++.+.|+... .++.+++
T Consensus 18 ~~~~~~--~~~~~~n~-------~~vl~a~~~~~~~----------~-------~~-~~~~~~~~y~~~~---~~~Le~~ 67 (409)
T 3jzl_A 18 DLQNKT--DEIAEFNQ-------AKVLDAFQENKVS----------D-------FH-FHPSTGYGYDDEG---RDTLERV 67 (409)
T ss_dssp HHHHHH--HHHHHHHH-------HHHHHHHHHTTCC----------G-------GG-GCCCCTTCTTCHH---HHHHHHH
T ss_pred HHHHHH--HHHHHhhH-------HHHHHHHHHhhhh----------h-------hc-cCCCcCCCCChhH---HHHHHHH
Confidence 357777 45667773 5677777653211 0 00 1223444455432 5678889
Q ss_pred HHHHcCCCCCCccEEE--eCCHHHHHHHHHhhCCCCCCCeEEEec--cccchhhHHHH------HHHHhcCCEEEEEecc
Q 006746 179 IMDFLNISENDYGMVF--TANRTSAFKLLAESYPFMSVKNLLTVY--DYESEAVEAMI------RTSEKRGARVMSAEFS 248 (632)
Q Consensus 179 ia~~l~a~~~ey~vvf--t~naT~al~lv~~sl~~~~gd~ilt~~--d~~s~~v~~~~------~~a~~~G~~v~~v~~~ 248 (632)
+++++|++. .+++ ++|+|+|+.+++.++ +++||+|++.. .|.. ....+. ..+++.|++++.++.+
T Consensus 68 lA~l~g~e~---alv~p~~~sGt~Ai~~al~al-l~~GD~Vl~~~~~~y~~-~~~~~~~~g~~~~~l~~~G~~~~~v~~~ 142 (409)
T 3jzl_A 68 YATVFKTEA---ALVRPQIISGTHAISTVLFGI-LRPDDELLYITGQPYDT-LEEIVGIRKQGQGSLKDFHIGYSSVPLL 142 (409)
T ss_dssp HHHHHTCSE---EEEETTSCSHHHHHHHHHHHH-CCTTCEEEECSSSCCTT-HHHHHTSSSSSSSCTGGGTCEEEECCCC
T ss_pred HHHHhCCCc---EEEECCCccHHHHHHHHHHHh-cCCCCEEEEeCCCCcHh-HHHHHhcccchhhHHHHcCCEEEEeCCC
Confidence 999999853 5665 889999999999998 78999988654 3332 221110 3456789999999987
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEec----cCCCCccccchH-HHHHHhh--CCcEEEEeccccCCCCCCCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYL-WMRIAQE--NDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~----~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+++.+|+++|+++|+++ ++++.+.. .+|+||...|++ |+++|++ +|+++++|.++..+.. ..+.
T Consensus 143 -~~g~~d~e~l~~ai~~~------tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~--~~~p 213 (409)
T 3jzl_A 143 -ENGDVDFPRIAKKMTPK------TKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE--YQEP 213 (409)
T ss_dssp -TTSCCCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS--SCCS
T ss_pred -CCCCcCHHHHHHhccCC------CeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccc--cCCc
Confidence 57889999999998754 58999999 999999999999 9999999 9999999999877651 1222
Q ss_pred CCCCCcEEEEccccccCCCCCc---eEEEEEeCCCccccC
Q 006746 322 SLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILV 358 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G---~G~L~Vr~~~~~~L~ 358 (632)
..+++|+++.|++|.+|. .| .|+++.+++.++.+.
T Consensus 214 ~~~g~Div~~S~sK~lgg--~~~~~GG~v~~~~~li~~l~ 251 (409)
T 3jzl_A 214 PEVGADIIAGSLIKNPGG--GLAKTGGYIAGKEALVDLCG 251 (409)
T ss_dssp GGGTCSEEEEETTSGGGT--TTCSSCEEEEECHHHHHHHH
T ss_pred cccCCeEEEECccccCCc--cCCceEEEEEeCHHHHHHHH
Confidence 346889999999998873 23 388888877766554
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=163.87 Aligned_cols=207 Identities=11% Similarity=0.004 Sum_probs=141.7
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC-
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI- 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a- 185 (632)
.--+|+|..+..+.++.+.+++.+.+..... ..|+.. .-..+.|+.++++++.
T Consensus 55 ~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~------------------------~~Y~~~--~g~~~lr~~ia~~l~~~ 108 (420)
T 4f4e_A 55 GVGVYTNEDGKIPLLRAVRDAEKARVEAGLP------------------------RGYLPI--DGIAAYDASVQKLLLGD 108 (420)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHTCCC------------------------CCCCCT--TCCHHHHHHHHHHHHCT
T ss_pred eeeeeECCCCCccCcHHHHHHHHHHhccCCC------------------------CCCCCC--CCcHHHHHHHHHHhcCC
Confidence 4467888888888889999987654321000 001100 0113678888888754
Q ss_pred -----CCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec-cCCccccCHH
Q 006746 186 -----SENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF-SWPRLRINSE 257 (632)
Q Consensus 186 -----~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~-~~~~~~i~~~ 257 (632)
+++..+|++|+|+|+|+.++++.+. +.+||+|++. ..|++ ....++..|++++.++. +..++.+|.+
T Consensus 109 ~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 183 (420)
T 4f4e_A 109 DSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWEN-----HRALFDMAGFEVVAYPYYDAKTNGVNFD 183 (420)
T ss_dssp TCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHH-----HHHHHHHTTCCEEEEECEETTTTEECHH
T ss_pred CccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHh-----HHHHHHHcCCeEEEeeeeccccCccCHH
Confidence 3321169999999999999955321 5789997754 34443 23455778999999998 3346678999
Q ss_pred HHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCC-C----CCCC-CC-CCCCC
Q 006746 258 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPK-D----MDSF-GL-SLVRP 326 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~-~----m~~l-dl-s~~~~ 326 (632)
+|++.|++. ++++++++++..+|+||..+|.+ |+++|+++|+++++|.+...-. + ..++ .+ ...+.
T Consensus 184 ~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 260 (420)
T 4f4e_A 184 GMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLN 260 (420)
T ss_dssp HHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCC
T ss_pred HHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCC
Confidence 999999742 13468999999999999998754 5677999999999999854321 0 0000 00 12456
Q ss_pred cEEEEccccccCCCCCc--eEEEEE
Q 006746 327 DFLICSFYQIFGENPSG--FGCLFV 349 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G--~G~L~V 349 (632)
++++.|+.|.|| +.| +|++++
T Consensus 261 ~i~~~S~SK~~~--~~G~RiG~~~~ 283 (420)
T 4f4e_A 261 VFVSSSFSKSFS--LYGERVGALSI 283 (420)
T ss_dssp EEEEEECTTTTT--CGGGCEEEEEE
T ss_pred EEEEEeCCccCc--CcCCCcEEEEE
Confidence 799999999999 557 788875
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=165.71 Aligned_cols=351 Identities=11% Similarity=0.039 Sum_probs=210.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|||+++. |.-++.+++++.+.+... .+... +. ......+.+++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--------------------~~~~~----~~-~~~~~~~l~~~la 95 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL--------------------DHLFS----EM-LSRPVVDLATRLA 95 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------CCCCT----TC-CCHHHHHHHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC--------------------ccccc----cc-CCHHHHHHHHHHH
Confidence 45789998432 334788888876543211 00000 10 1245567888999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEe-ccccchhhHHHHHHHH---h-----cCCEEEEEeccC-
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTV-YDYESEAVEAMIRTSE---K-----RGARVMSAEFSW- 249 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~-~d~~s~~v~~~~~~a~---~-----~G~~v~~v~~~~- 249 (632)
++++.+++ .|+||+|+++|+.+++..+. +..+++|++. ..||......+. ... + ....+..++++.
T Consensus 96 ~~~~~~~~--~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (433)
T 1zod_A 96 NITPPGLD--RALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAAS-ATYSAGRKGVGPAAVGSFAIPAPFT 172 (433)
T ss_dssp HHSCTTCC--EEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHH-TCCSSCCSSSCCCCTTEEEECCCCT
T ss_pred HhCCCCcC--EEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHh-hcCCccccccCCCCCCceEecCCcc
Confidence 99998765 79999999999999987542 2335677654 466652222211 100 0 012344554421
Q ss_pred ---C-------ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc-CC
Q 006746 250 ---P-------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL-GP 313 (632)
Q Consensus 250 ---~-------~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~g 313 (632)
+ .+.+++++|+++|++.. .+++++|++..+.|.||.+.| ++ +.++|+++|+++++|.++. ++
T Consensus 173 ~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g 250 (433)
T 1zod_A 173 YRPRFERNGAYDYLAELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVG 250 (433)
T ss_dssp TSCCCEETTEECHHHHHHHHHHHHHHHC--CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cccccCCchhhhHHHHHHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 0 01246899999987421 124678888777888999887 88 9999999999999999987 44
Q ss_pred CC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 314 KD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 314 ~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
.. +..++.....+|++++| |.||. +.++|+++++++.++.+.+.... .
T Consensus 251 ~~g~~~~~~~~~~~~di~s~s--K~~~~-G~~ig~~~~~~~~~~~~~~~~~~------------~--------------- 300 (433)
T 1zod_A 251 RTGTMFACQRDGVTPDILTLS--KTLGA-GLPLAAIVTSAAIEERAHELGYL------------F--------------- 300 (433)
T ss_dssp TTSSSSTHHHHTCCCSEEEEC--HHHHT-TSSCEEEEECHHHHHHHHHTTCC------------C---------------
T ss_pred cCchHhHHhhcCCCCCEEEec--ccccC-CCCeeEEEEhHHHHHhhccCCCC------------C---------------
Confidence 21 11112223467877554 97773 44689999998776555431000 0
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGR 471 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~ 471 (632)
.+| |. .|.+...+.. ++|+.+.+.+ +.+|++
T Consensus 301 --------~~t--~~------------~~~~~~~a~~------------------------aal~~~~~~~---~~~~~~ 331 (433)
T 1zod_A 301 --------YTT--HV------------SDPLPAAVGL------------------------RVLDVVQRDG---LVARAN 331 (433)
T ss_dssp --------CCT--TT------------TCHHHHHHHH------------------------HHHHHHHHTT---HHHHHH
T ss_pred --------CCC--CC------------cCHHHHHHHH------------------------HHHHHHHhCC---HHHHHH
Confidence 000 00 0111112222 6777766533 567788
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC--CC--ccCHHHHHHHHHhCCcEEccCccCChH
Q 006746 472 CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--RE--KIEPVLVQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 472 ~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~--G~--~i~~~~V~kla~~~gI~lr~G~~c~~~ 547 (632)
.+.++|++.|.++.. +.|.+..+. ..|.++.+.+.+.. +. ......+.+.+.++||.++.|..
T Consensus 332 ~~~~~l~~~l~~l~~----~~~~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---- 398 (433)
T 1zod_A 332 VMGDRLRRGLLDLME----RFDCIGDVR-----GRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQL---- 398 (433)
T ss_dssp HHHHHHHHHHHHHHH----HCTTEEEEE-----EETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECC----
T ss_pred HHHHHHHHHHHHHHH----hCCCeEEEE-----EEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCC----
Confidence 888888888877610 013343221 24777777765310 00 01234454444468998875410
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
....+.||+|+++..|.+||+++++.|++.++
T Consensus 399 --------------------------------~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~ 430 (433)
T 1zod_A 399 --------------------------------PGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430 (433)
T ss_dssp --------------------------------TTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CCCCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 00136899999999999999999999998875
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-15 Score=162.76 Aligned_cols=316 Identities=12% Similarity=0.063 Sum_probs=191.8
Q ss_pred HHHHHHHHHc-----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC----eEEEe-ccccchhhHHHHHHHHhcCCEEE
Q 006746 174 AMKKRIMDFL-----NISENDYGMVFTANRTSAFKLLAESYPFMSVK----NLLTV-YDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 174 ~~R~~ia~~l-----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd----~ilt~-~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
+.|+.|++++ |.+.+...|++|+|+++|+.+++..+ ..+|| +|++. ..|++ + ...++..|++++
T Consensus 133 ~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~~~d~Vlv~~p~y~~----~-~~~~~~~g~~~v 206 (498)
T 3ihj_A 133 CIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL-VSGGGKSRTGVMIPIPQYPL----Y-SAVISELDAIQV 206 (498)
T ss_dssp HHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH-CCCCGGGSEEEEEEESCCTH----H-HHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH-cCCCCCCCCEEEEeCCCchh----H-HHHHHHcCCEEE
Confidence 4666666665 45333338999999999999999988 45654 77654 46653 2 334566899999
Q ss_pred EEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCCCC--
Q 006746 244 SAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKDM-- 316 (632)
Q Consensus 244 ~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~~m-- 316 (632)
.++.+.. +..+|+++|+++|++... ..+++++++...+|+||..+|.+ |+++|+++|+++++|.+.....--
T Consensus 207 ~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~ 285 (498)
T 3ihj_A 207 NYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD 285 (498)
T ss_dssp EEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTT
T ss_pred EeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCC
Confidence 9998732 236899999999987421 12468999999999999999854 677899999999999986542100
Q ss_pred -CCCCCCCC----------CC-cEEEEcccccc-CCCCCceEEEEE---eCCCccccCCCCCCCceeecccccccccccc
Q 006746 317 -DSFGLSLV----------RP-DFLICSFYQIF-GENPSGFGCLFV---KKSTVPILVDNTSSGMVSLLPAKKQLWLTDE 380 (632)
Q Consensus 317 -~~ldls~~----------~~-Df~~~S~hK~~-G~~P~G~G~L~V---r~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~ 380 (632)
....+... .+ -+++.|+.|.| |.+...+|++.+ .+++++.+.....
T Consensus 286 ~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~------------------ 347 (498)
T 3ihj_A 286 CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS------------------ 347 (498)
T ss_dssp CCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHH------------------
T ss_pred CCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHh------------------
Confidence 01111110 12 26778999977 742234566664 3333322211000
Q ss_pred cCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH-HHH
Q 006746 381 FSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD-QVD 459 (632)
Q Consensus 381 ~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd-~~~ 459 (632)
... +++.+...++.. . -.++..++ ..++ ++.
T Consensus 348 ------------------~~~----------------~~~~~~q~a~~~--------~-l~~~~~g~-----~~~~~~~~ 379 (498)
T 3ihj_A 348 ------------------VRL----------------CPPVSGQAAMDI--------V-VNPPVAGE-----ESFEQFSR 379 (498)
T ss_dssp ------------------HSC----------------CCCHHHHHHHHH--------H-TCCCCTTS-----TTHHHHHH
T ss_pred ------------------ccC----------------CCCHHHHHHHHH--------H-hcCCccCc-----ccHHHHHH
Confidence 000 001111111110 0 00000000 0111 222
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEE-EEccCCC-------CccCHHH--HHH
Q 006746 460 SLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF-NVFDWKR-------EKIEPVL--VQK 529 (632)
Q Consensus 460 ~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaF-nv~~~~G-------~~i~~~~--V~k 529 (632)
. +..+.++.+...+++.+.|.++ |.++++.| .+++..| .+..+.+ ..+++.. +.+
T Consensus 380 ~--~~~~~~~l~~~~~~l~~~L~~~--------~g~~~~~p-----~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ 444 (498)
T 3ihj_A 380 E--KESVLGNLAKKAKLTEDLFNQV--------PGIHCNPL-----QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMK 444 (498)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHTS--------TTEECCCC-----CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHhcC--------CCcEecCC-----CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHH
Confidence 1 4566788888889999999887 66877655 4566555 3321100 0134444 578
Q ss_pred HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 530 LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 530 la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
+++++||.+..|..|.. ..+.+.+|+|++ .+.+|++.+++.|+++
T Consensus 445 ll~~~gI~v~pG~~f~~---------------------------------~~~~~~~Ris~~--~~~e~l~~~i~~L~~~ 489 (498)
T 3ihj_A 445 LLEETGICVVPGSGFGQ---------------------------------REGTYHFRMTIL--PPVEKLKTVLQKVKDF 489 (498)
T ss_dssp HHHHHCBCCEEGGGTCC---------------------------------CTTCCBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEEeCcccCC---------------------------------CCCCCEEEEEeC--CCHHHHHHHHHHHHHH
Confidence 88888999987754432 113458999995 8999999999999988
Q ss_pred hhh
Q 006746 610 LDA 612 (632)
Q Consensus 610 l~~ 612 (632)
++.
T Consensus 490 ~~~ 492 (498)
T 3ihj_A 490 HIN 492 (498)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=159.02 Aligned_cols=220 Identities=10% Similarity=0.100 Sum_probs=157.7
Q ss_pred HHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHH
Q 006746 94 DQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES 173 (632)
Q Consensus 94 d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~ 173 (632)
.++| ++|+++ +..++.|+ ..+++++.+..... ++..+ .+.+.|+.. -.+
T Consensus 29 ~~~~-~~~~~~--~~i~~~n~-------~~Vl~a~~~~~~~~-----------------~~~~~-~~gy~Y~~~---g~~ 77 (427)
T 3hvy_A 29 NDVE-KEFKYY--DEIREYNQ-------LKVLKAFQEERISE-----------------SHFTN-SSGYGYNDI---GRD 77 (427)
T ss_dssp HHHH-HHHHHH--HHHHHHHH-------HHHHHHHHHTTCCG-----------------GGSCC-CCTTCTTCH---HHH
T ss_pred HHHH-HHHHHH--HHHHHhhH-------HHHHHHHHHHHHHH-----------------Hhccc-CcCCCCCch---hHH
Confidence 3444 468888 56788886 67888876643210 01112 223334432 267
Q ss_pred HHHHHHHHHcCCCCCCccEEE--eCCHHHHHHHHHhhCCCCCCCeEEEec--cccchhhHHH-------HHHHHhcCCEE
Q 006746 174 AMKKRIMDFLNISENDYGMVF--TANRTSAFKLLAESYPFMSVKNLLTVY--DYESEAVEAM-------IRTSEKRGARV 242 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvf--t~naT~al~lv~~sl~~~~gd~ilt~~--d~~s~~v~~~-------~~~a~~~G~~v 242 (632)
+.++++++++|++. .+++ ++|+|+|+.+++.++ +++||+|++.. .|+. ....+ ...++..|+++
T Consensus 78 ~Le~~lA~l~g~e~---alv~p~~~sGt~A~~~al~al-l~pGD~Vl~~~~~~y~~-~~~~~g~~~~~~~~~l~~~G~~~ 152 (427)
T 3hvy_A 78 SLDRVYANIFNTES---AFVRPHFVNGTHAIGAALFGN-LRPNDTMMSICGMPYDT-LHDIIGMDDSKKVGSLREYGVKY 152 (427)
T ss_dssp HHHHHHHHHHTCSE---EEEETTCCSHHHHHHHHHHHT-CCTTCEEEECSSSCCGG-GHHHHTCCTTCCSCCTGGGTCEE
T ss_pred HHHHHHHHHhCCCc---eEEeCCCCcHHHHHHHHHHHh-cCCCCEEEEeCCCCchh-HHHHhccccchhhhHHHHcCCEE
Confidence 88899999999863 4665 789999999999998 89999988654 3432 22111 03346689999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEec----cCCCCccccchH-HHHHHhh--CCcEEEEeccccCCC-
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYL-WMRIAQE--NDWHILIDACALGPK- 314 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~----~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~g~- 314 (632)
+.++. +++.+|.++|++++++. ++++++++.+ .+|+||...|++ |+++|++ +|++++||.++..+.
T Consensus 153 ~~v~~--~~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~ 226 (427)
T 3hvy_A 153 KMVDL--KDGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVE 226 (427)
T ss_dssp EECCC--BTTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTS
T ss_pred EEecC--CCCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccccc
Confidence 99987 46779999999999831 1359999999 999999999999 9999999 899999999987765
Q ss_pred CCCCCCCCCCCCcEEEEccccccCCC--CCceEEEEEeCCCccccCC
Q 006746 315 DMDSFGLSLVRPDFLICSFYQIFGEN--PSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 315 ~m~~ldls~~~~Df~~~S~hK~~G~~--P~G~G~L~Vr~~~~~~L~~ 359 (632)
...++ .+++|+++.|+||.+|.+ |. .|+++.+++.++.+..
T Consensus 227 ~~~p~---~~gaDiv~~S~sK~lgg~g~~~-GG~i~~~~~li~~l~~ 269 (427)
T 3hvy_A 227 EKEPT---DVGADIIAGSLIKNIGGGIATT-GGYIAGKEEYVTQATF 269 (427)
T ss_dssp SSCGG---GGTCSEEEEETTSGGGTTTCCS-CEEEEECHHHHHHHHH
T ss_pred CCCCc---ccCCeEEEECCcccccccccce-EEEEEECHHHHHHHHH
Confidence 21233 357899999999988821 22 3888888777665543
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-15 Score=165.31 Aligned_cols=165 Identities=13% Similarity=0.139 Sum_probs=119.1
Q ss_pred HHHHHHHHHc----C--CCCC-CccEEEeCCHHHHHHHHHhhC----CCCCCCeEEEec-cccchhhHHHHHHHHhcCCE
Q 006746 174 AMKKRIMDFL----N--ISEN-DYGMVFTANRTSAFKLLAESY----PFMSVKNLLTVY-DYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~-ey~vvft~naT~al~lv~~sl----~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~ 241 (632)
+.|+.+++++ + .+.. +.+|++|+|+|+|+.+++.++ -+++||+|++.. .|++ ....++..|++
T Consensus 142 ~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~-----~~~~~~~~g~~ 216 (533)
T 3f6t_A 142 NTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTP-----YLRIPELKDYE 216 (533)
T ss_dssp HHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHH-----HHTSGGGGGSE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHH-----HHHHHHHcCCe
Confidence 4556666655 2 2221 237999999999999999983 378999987654 5543 23345667999
Q ss_pred EEEEeccC---CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHh-hCCcEEEEeccccCC
Q 006746 242 VMSAEFSW---PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQ-ENDWHILIDACALGP 313 (632)
Q Consensus 242 v~~v~~~~---~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~-~~g~~vlvDaaq~~g 313 (632)
++.++++. .+..+++++|+++++++ ++++++.+.+|+||..+|.+ + +++|+ ++|+++++|.++..-
T Consensus 217 ~~~v~~~~~~~~~~~~d~~~l~~~l~~~------~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~ 290 (533)
T 3f6t_A 217 LVEVDLHSYEKNDWEIEPNEIEKLKDPS------IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAF 290 (533)
T ss_dssp EEEECCCEETTTTSEECHHHHHHHSCTT------EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGG
T ss_pred EEEEEecCCcccCCCCCHHHHHHHhCCC------CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcccc
Confidence 99998852 34678999999988653 58999999999999999886 5 45666 689999999986531
Q ss_pred CCCCCCCCC--CCCCcEEEEccccccCCCCCc--eEEEEEeCC
Q 006746 314 KDMDSFGLS--LVRPDFLICSFYQIFGENPSG--FGCLFVKKS 352 (632)
Q Consensus 314 ~~m~~ldls--~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~~ 352 (632)
.. ....+. ..+.++++.|++|.+| ++| +|+++++++
T Consensus 291 ~~-~~~~~~~~~~~~~i~~~S~SK~~g--~~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 291 VP-NFKSIYSVVPYNTMLVYSYSKLFG--CTGWRLGVIALNEK 330 (533)
T ss_dssp ST-TCCCHHHHSGGGEEEEEESHHHHT--CGGGCEEEEEEESS
T ss_pred cc-CccCHhhcCCCCEEEEecCcccCC--CcccceEEEEECcH
Confidence 10 111111 1234699999999999 568 899999987
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=158.82 Aligned_cols=173 Identities=14% Similarity=0.106 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHcCCCCCCccEEE--eCCHHHHHHHHHhhCCCCCCCeEEEec--cccchhhHHH-------HHHHHhcCC
Q 006746 172 ESAMKKRIMDFLNISENDYGMVF--TANRTSAFKLLAESYPFMSVKNLLTVY--DYESEAVEAM-------IRTSEKRGA 240 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvf--t~naT~al~lv~~sl~~~~gd~ilt~~--d~~s~~v~~~-------~~~a~~~G~ 240 (632)
.++.++++++++|++. .++| ++|+|+|+.+++.++ +++||+|++.. .|.. ....+ ...++..|+
T Consensus 75 ~~~Le~~lA~l~g~e~---alv~p~~~sGt~Ai~~al~al-l~pGD~Vl~~~~~~y~~-~~~~~g~~~~~~~~~l~~~G~ 149 (427)
T 3i16_A 75 RDSLDAVYARVFNTES---ALVRPHFVNGTHALGAALFGN-LRPGNTMLSVCGEPYDT-LHDVIGITENSNMGSLKEFGI 149 (427)
T ss_dssp HHHHHHHHHHHHTCSE---EEEETTCCSHHHHHHHHHHHH-CCTTCEEEESSSSCCGG-GHHHHTCSCCCSSCCTGGGTC
T ss_pred HHHHHHHHHHHhCCcc---eEEeCCCccHHHHHHHHHHHH-hCCCCEEEEeCCCccHH-HHHHHhccccchHHHHHHcCC
Confidence 5678889999999963 4776 889999999999988 78999988664 3432 22221 034467899
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEec----cCCCCccccchH-HHHHHhh--CCcEEEEeccccCC
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYL-WMRIAQE--NDWHILIDACALGP 313 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~----~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~g 313 (632)
+++.++.+ +++.+|.++|++++++. .+++++++.. .+|+||...|++ |+++|++ +|++++||.++..+
T Consensus 150 ~~~~v~~~-~~g~~D~e~l~~~l~~~----~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~ 224 (427)
T 3i16_A 150 NYKQVDLK-EDGKPNLEEIEKVLKED----ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEF 224 (427)
T ss_dssp EEEECCCC-TTSSCCHHHHHHHHHTC----TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred EEEEecCc-cCCCcCHHHHHHHhhCC----CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 99999987 56789999999999831 1359999999 899999999999 9999999 99999999998776
Q ss_pred C-CCCCCCCCCCCCcEEEEccccccCCCC---CceEEEEEeCCCccccCC
Q 006746 314 K-DMDSFGLSLVRPDFLICSFYQIFGENP---SGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 314 ~-~m~~ldls~~~~Df~~~S~hK~~G~~P---~G~G~L~Vr~~~~~~L~~ 359 (632)
. ...++ .+++|+++.|+||.+| + ...|+++.+++.++.+..
T Consensus 225 ~~~~~p~---~~gaDiv~~S~sK~lg--g~g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 225 MDTKEPT---DVGADLIAGSLIKNIG--GGIAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp SSSSCGG---GGTCSEEEEETTSGGG--TTTCCSCEEEEECHHHHHHHHH
T ss_pred cccCCcc---ccCCeEEEecCcccCC--CCCCceEEEEEECHHHHHHHHH
Confidence 5 11233 3578999999999888 4 234899988877765543
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-14 Score=152.77 Aligned_cols=356 Identities=10% Similarity=0.085 Sum_probs=208.9
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||.++. |.-++.+++++.+.+.... .... + -..+...+.+++++
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~--------------------~~~~----~-~~~~~~~~la~~l~ 101 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLS--------------------YFPM----S-QSHEPAIKLAEKLN 101 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCC--------------------CCCT----T-SEEHHHHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcC--------------------Cccc----c-cCCHHHHHHHHHHH
Confidence 56779998765 3447888888765443210 0000 0 02356678899999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-C---C---CCCeEEE-eccccchhhHHHHHHH---Hh-----cCCEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-F---M---SVKNLLT-VYDYESEAVEAMIRTS---EK-----RGARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~---~---~gd~ilt-~~d~~s~~v~~~~~~a---~~-----~G~~v~~ 244 (632)
++++.+. .|+||+|+|+|+..++..+. + . ++++|++ ...||......+.... .+ ....+..
T Consensus 102 ~~~~~~~---~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (452)
T 3n5m_A 102 EWLGGEY---VIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLH 178 (452)
T ss_dssp HHHTSCE---EEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEE
T ss_pred HhCCCCc---eEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeE
Confidence 9998754 29999999999999887752 1 3 5677664 4566653222211000 00 0112444
Q ss_pred EeccCCccc------------cCHHHHHHHHHhcCcCCCceeEEEEecc-CCCCccccc----hH-HHHHHhhCCcEEEE
Q 006746 245 AEFSWPRLR------------INSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYP----YL-WMRIAQENDWHILI 306 (632)
Q Consensus 245 v~~~~~~~~------------i~~~~l~~~i~~~~~~~~~~~Lv~~~~~-sn~TG~~~p----l~-i~~~a~~~g~~vlv 306 (632)
++.. ...+ .+.++|+++|++.. ..++++|++..+ +| ||.+.| ++ |.++|+++|+++++
T Consensus 179 ~~~~-~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~ 254 (452)
T 3n5m_A 179 VTPP-DCYRMPGIERENIYDVECVKEVDRVMTWEL--SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLIS 254 (452)
T ss_dssp ECCC-CTTTSTTTTTSCGGGCHHHHHHHHHHHHHC--GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred eCCC-ccccCccCCchhhHHHHHHHHHHHHHHhcC--CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEE
Confidence 4431 0001 11789999997211 124688888888 89 999998 89 99999999999999
Q ss_pred ecccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCC
Q 006746 307 DACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 307 Daaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~ 383 (632)
|-++. ++.. +...+.....+|++++| |.+|.++..+|++++++++++.+.+....+. +.
T Consensus 255 DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~---------~~------- 316 (452)
T 3n5m_A 255 DEVICGFGRTGKAFGFMNYDVKPDIITMA--KGITSAYLPLSATAVKREIYEAFKGKGEYEF---------FR------- 316 (452)
T ss_dssp ECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEHHHHGGGCSSSTTCS---------CC-------
T ss_pred ecchhCCCcccccchhhhcCCCCCEEeec--ccccCCCcceEEEEECHHHHHHHhhccCCCC---------cc-------
Confidence 99876 3321 11223333468888765 9666312568999999988776643100000 00
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 463 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl 463 (632)
..+| |. .|.....+.. ++|+.+.+
T Consensus 317 ---------------~~~t--~~------------~~~~~~aaa~------------------------aal~~~~~--- 340 (452)
T 3n5m_A 317 ---------------HINT--FG------------GNPAACALAL------------------------KNLEIIEN--- 340 (452)
T ss_dssp ---------------CCCS--ST------------TCHHHHHHHH------------------------HHHHHHHH---
T ss_pred ---------------ccCC--CC------------CCHHHHHHHH------------------------HHHHHHHh---
Confidence 0011 00 0111111111 56666654
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCC--CCccCH---HHHHHHHHhCCcEE
Q 006746 464 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--REKIEP---VLVQKLADRENISL 538 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~--G~~i~~---~~V~kla~~~gI~l 538 (632)
+.+.++++.+.+++++.|.++.. +.|.+...- ..|.++.+.+.+.. .+.++. ..+.+.+.++||.+
T Consensus 341 ~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 411 (452)
T 3n5m_A 341 ENLIERSAQMGSLLLEQLKEEIG----EHPLVGDIR-----GKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLII 411 (452)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHT----TCTTEEEEE-----ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh----cCCCeEEEE-----EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEE
Confidence 34456677777777777766511 114343321 24666666664311 111112 24555555679998
Q ss_pred ccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 539 SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 539 r~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+.+..+.. ...+.||+++++..|.|||+++++.|+++++
T Consensus 412 ~~~~~~~~----------------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 412 GRNGMTTA----------------------------------GYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp EECTTSST----------------------------------TCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred eecCcccC----------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 86532211 1246999999999999999999999999875
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=158.26 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCe--EEEeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKN--LLTVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~--ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
...++.|+++++++|.+. .+|++|+|+|+.+++..+ ..+|++ |++...+|...... ...+...|++++.++.
T Consensus 48 ~~~~~l~~~la~~~~~~~----~i~~~~g~~a~~~a~~~~-~~~g~~~vvi~~~~~~~~~~~~-~~~~~~~g~~~~~v~~ 121 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQS----AVFFPSGTMAQQIALRIW-ADRKENRRVAYHPLSHLEIHEQ-DGLKELQQITPLLLGT 121 (359)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHH-HHHHTCCEEEECTTCHHHHSST-THHHHHHCCEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHH-HhcCCCcEEEEeccceeeehhc-chHHHhcCceEEecCC
Confidence 456789999999999863 366789999999998887 456776 44443333211111 1122446999988876
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccchH-H---HHHHhhCCcEEEEeccccCCC----CCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL-W---MRIAQENDWHILIDACALGPK----DMDS 318 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~pl~-i---~~~a~~~g~~vlvDaaq~~g~----~m~~ 318 (632)
+++.+|+++|+++ .+ ++++|.+...+|.+ |..+|.+ + +++|+++|+++++|+++..+. ....
T Consensus 122 --~~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~ 192 (359)
T 3pj0_A 122 --ANQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSA 192 (359)
T ss_dssp --TTSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCH
T ss_pred --cCCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCH
Confidence 4567899999876 32 35899998887777 7999977 6 889999999999999865421 0011
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.++. ...|+++.|++|.+|. |.| |+++.+++.++.+
T Consensus 193 ~~~~-~~~d~~~~s~sK~~~~-~~g-g~~~~~~~l~~~~ 228 (359)
T 3pj0_A 193 EEIC-ALFDSVYVSFYKGIGG-IAG-AILAGNDDFVQEA 228 (359)
T ss_dssp HHHH-TTCSEEEEESSSTTCC-SSC-EEEEECHHHHHHH
T ss_pred HHhh-ccCCEEEEeccccCCC-cce-EEEECCHHHHHHH
Confidence 1111 3679999999997775 766 8877777766544
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=156.07 Aligned_cols=358 Identities=14% Similarity=0.035 Sum_probs=198.0
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||+.+. |.-++.+++++.+.+..... | .+. . + ..+...+.+++++
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-----~-------------~~~-~---~--~~~~~~~l~~~la 82 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPF-----V-------------HGS-Q---F--SSDVLEEYAGRLA 82 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCC-----C-------------CTT-T---C--EEHHHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhccc-----c-------------ccc-c---c--CCHHHHHHHHHHH
Confidence 45679998763 33388888886653321100 0 000 0 0 2355668889999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-------CCCCeEEE-eccccchhhHHHHHHHHhcC---------C--E
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF-------MSVKNLLT-VYDYESEAVEAMIRTSEKRG---------A--R 241 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~-------~~gd~ilt-~~d~~s~~v~~~~~~a~~~G---------~--~ 241 (632)
++++.+++ .|+||+++++|+.+++..+-. ..+++|++ ...||...... ........ . .
T Consensus 83 ~~~~~~~~--~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~ 159 (430)
T 3i4j_A 83 RFVGLPTF--RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGS-LAASGMGARRELYTPLMRPEA 159 (430)
T ss_dssp HHTTCTTC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC--------------------------CGGG
T ss_pred HhCCCCCC--EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCccc-ccccCccccccccCCcCCCCC
Confidence 99998765 799999999999998877521 23566664 44566421111 11100000 0 2
Q ss_pred EEEEeccCC--ccccCHHHHHHHHHhcCcCCCceeEEEEeccCC-CCccccc----hH-HHHHHhhCCcEEEEecccc-C
Q 006746 242 VMSAEFSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSR-MTGARYP----YL-WMRIAQENDWHILIDACAL-G 312 (632)
Q Consensus 242 v~~v~~~~~--~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn-~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~ 312 (632)
+..++.+.. .+..+.++|+++|++.. .+.+.+|++..+.+ .+|.+.| ++ |.++|+++|+++++|-++. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~ 237 (430)
T 3i4j_A 160 WPKLPKPDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGM 237 (430)
T ss_dssp SCEECCCCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred ceEcCCCcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 333333210 02235688888887421 12457888878888 9999888 88 9999999999999999876 3
Q ss_pred CCC--CCCCCCC-CCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 313 PKD--MDSFGLS-LVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 313 g~~--m~~ldls-~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
+.. +..++.- ...+|++++| |.+|. . -.+|++++++++++.+.+.. +.. .
T Consensus 238 ~~~g~~~~~~~~~~~~~di~t~s--K~l~~-G~~r~G~~~~~~~i~~~~~~~~--~~~---------~------------ 291 (430)
T 3i4j_A 238 GRCGSPLALSRWSGVTPDIAVLG--KGLAA-GYAPLAGLLAAPQVYETVMGGS--GAF---------M------------ 291 (430)
T ss_dssp TTTSSSSGGGGTTTCCCSEEEEC--GGGTT-TSSCCEEEEECHHHHHHHHHTT--CBC---------C------------
T ss_pred CcccchhhhhhhcCCCCcEEEEc--ccccC-CccccEEEEECHHHHHHHhccC--Ccc---------c------------
Confidence 321 1112222 3457888766 98882 1 23799999888766554320 000 0
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
..+| |. .|.....+. .++|+.+.. +.+.+
T Consensus 292 ----------~~~t--~~------------~~~~~~aaa------------------------~aal~~~~~---~~~~~ 320 (430)
T 3i4j_A 292 ----------HGFT--YA------------GHPVSVAAG------------------------LSVLDIVER---EDLTG 320 (430)
T ss_dssp ----------CCCT--TT------------TCHHHHHHH------------------------HHHHHHHHH---TTHHH
T ss_pred ----------ccCC--CC------------CCHHHHHHH------------------------HHHHHHHHc---ccHHH
Confidence 0000 00 011111111 156666654 23445
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC-c----cCHHHHHHHHHhCCcEEccCcc
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE-K----IEPVLVQKLADRENISLSYGSL 543 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~-~----i~~~~V~kla~~~gI~lr~G~~ 543 (632)
+++.+.+++++.|.++.. ..|.+..+- ..|..+.+.+.+.+.. . -....+.+.+.++||.++.+..
T Consensus 321 ~~~~~~~~~~~~l~~~~~----~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 391 (430)
T 3i4j_A 321 AAKERGAQLLAGLQALQA----RFPQMMQVR-----GTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSG 391 (430)
T ss_dssp HHHHHHHHHHHHHHHHHH----HCTTEEEEE-----EETTEEEEEEC------------CHHHHHHHHHHTTEECC----
T ss_pred HHHHHHHHHHHHHHHHHH----hCCCeEEEE-----EEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccc
Confidence 555555555555555410 014454332 2467778877643210 0 0124455555578999875421
Q ss_pred CChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 544 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 544 c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
... +.+.+.||+++++..|.||++++++.|+++++.
T Consensus 392 ~~~---------------------------------~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 392 AEP---------------------------------NGRGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp ----------------------------------------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccC---------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 110 112458999999999999999999999998864
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-14 Score=153.54 Aligned_cols=222 Identities=14% Similarity=0.132 Sum_probs=137.3
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..+. |.-++.+++++.+.+..... .... .+. ..+...+.+++++
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~------------------~~~~----~~~-~~~~~~~la~~l~ 105 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAY------------------YHAY----VGH-GTEASITLAKMII 105 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSC------------------CCCC----TTC-CCHHHHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc------------------cccc----ccc-CCHHHHHHHHHHH
Confidence 56779998754 44478888886553321100 0000 000 1245668899999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-------CCCCeEEE-eccccchhhHHHHHH--------HHhcCCEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF-------MSVKNLLT-VYDYESEAVEAMIRT--------SEKRGARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~-------~~gd~ilt-~~d~~s~~v~~~~~~--------a~~~G~~v~~ 244 (632)
++++.+.+ .|+||+|+|+|+..++..+.- ..+++|++ ...||......+.-. ....+..+..
T Consensus 106 ~~~~~~~~--~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (460)
T 3gju_A 106 DRAPKGMS--RVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLH 183 (460)
T ss_dssp HHSCTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEE
T ss_pred hhCCCCcC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEE
Confidence 99877654 799999999999998877621 23466664 456665332221100 0011224555
Q ss_pred EeccC----CccccC--------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEe
Q 006746 245 AEFSW----PRLRIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILID 307 (632)
Q Consensus 245 v~~~~----~~~~i~--------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvD 307 (632)
++... ++...+ .++|+++|.+.. .+++++|++..+.+.+|.+.| ++ |.++|+++|+++++|
T Consensus 184 ~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D 261 (460)
T 3gju_A 184 TEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVAD 261 (460)
T ss_dssp ECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred eCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 65431 111122 578888887421 124688999889999999887 88 999999999999999
Q ss_pred cccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccC
Q 006746 308 ACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILV 358 (632)
Q Consensus 308 aaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~ 358 (632)
-++. +|.. +...+.....||++++| |.+|. . ..+|++++++++++.+.
T Consensus 262 Ev~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~g-G~~~lg~v~~~~~i~~~~~ 313 (460)
T 3gju_A 262 EVVTGFGRLGTMFGSDHYGIKPDLITIA--KGLTS-AYAPLSGVIVADRVWQVLV 313 (460)
T ss_dssp CTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTT-TSSCCEEEEEEHHHHHHHH
T ss_pred ccccCCCcccccchHhhcCCCCCeeeee--hhhcC-CCCCeEEEEECHHHHHHHh
Confidence 9876 3321 11112223468988766 97762 2 24799999988776553
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-14 Score=154.88 Aligned_cols=340 Identities=13% Similarity=0.109 Sum_probs=198.1
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccc-hhHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRI 179 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~-~~~~~~~~R~~i 179 (632)
+++.|||+++ .|.-++.+++++.+.+.... + .+.. .||.. ..++.+++.+++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~------------~------~~~~---~~~~~~~~~l~~~la~~l 119 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVST------------F------INRP---ALGILPPENFVEKLRESL 119 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHH------------H------HCCC---CTTTSCBTTHHHHHHHTG
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcc------------c------cccc---ccccccHHHHHHHHHHHH
Confidence 6788999854 35568889998776432100 0 0000 01210 124445555556
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhCC------------CC------------CC---CeEEE-eccccchhhHHH
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESYP------------FM------------SV---KNLLT-VYDYESEAVEAM 231 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl~------------~~------------~g---d~ilt-~~d~~s~~v~~~ 231 (632)
+++++.+.+ .|+||+++|+|+..++.... +. +| ++|++ ...||......+
T Consensus 120 ~~~~~~~~~--~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~ 197 (472)
T 1ohv_A 120 LSVAPKGMS--QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCL 197 (472)
T ss_dssp GGGCCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHH
T ss_pred HHhCCCCcC--EEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHH
Confidence 666654443 79999999999998886551 11 35 66664 446776434332
Q ss_pred HHH----HHhcCCEE---EEEeccC---Ccc----------ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc-
Q 006746 232 IRT----SEKRGARV---MSAEFSW---PRL----------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP- 290 (632)
Q Consensus 232 ~~~----a~~~G~~v---~~v~~~~---~~~----------~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p- 290 (632)
.-. .+..|..+ ..+++.. +.. ..++++|+++|++......++++|++..+.+.+|.+.|
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~ 277 (472)
T 1ohv_A 198 ATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHAS 277 (472)
T ss_dssp HHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCC
T ss_pred hcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCC
Confidence 110 01223221 1233310 100 12578888888752100014689999888888999988
Q ss_pred ---hH-HHHHHhhCCcEEEEecccc-CCCCCCC-CCCCCCC----CcEEEEccccc-cCCCCCceEEEEEeCCCccccCC
Q 006746 291 ---YL-WMRIAQENDWHILIDACAL-GPKDMDS-FGLSLVR----PDFLICSFYQI-FGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 291 ---l~-i~~~a~~~g~~vlvDaaq~-~g~~m~~-ldls~~~----~Df~~~S~hK~-~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
++ |.++|+++|+++++|.+|. +|.. .. +.+..++ ||++++| |. +| | |++ +++.+ ..+.+
T Consensus 278 ~~~l~~l~~l~~~~g~lli~DEv~~g~g~~-g~~~~~~~~gv~~~~Di~t~s--K~~l~----G-G~~-~~~~~-~~~~~ 347 (472)
T 1ohv_A 278 DDFFRKLRDISRKHGCAFLVDEVQTGGGST-GKFWAHEHWGLDDPADVMTFS--KKMMT----G-GFF-HKEEF-RPNAP 347 (472)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSSSGGGGGCCSSCCSEEEEC--GGGSS----E-EEE-ECGGG-SCSSS
T ss_pred HHHHHHHHHHHHHhCCEEEEeCcccCCCCC-CCchhccccCCCCCCCEEEEc--ccccc----C-Ccc-Cchhh-ccccc
Confidence 88 9999999999999999997 3431 11 2333334 8998777 96 55 3 544 44332 11111
Q ss_pred CCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhc
Q 006746 360 NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKN 439 (632)
Q Consensus 360 ~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~ 439 (632)
... .+| |. .|.+...+..
T Consensus 348 ~~~-------------------------------------~~T--~~------------~~~~~~aaa~----------- 365 (472)
T 1ohv_A 348 YRI-------------------------------------FNT--WL------------GDPSKNLLLA----------- 365 (472)
T ss_dssp SSS-------------------------------------CCS--SS------------SCHHHHHHHH-----------
T ss_pred ccc-------------------------------------cCc--cC------------ccHHHHHHHH-----------
Confidence 110 111 00 1112222222
Q ss_pred cCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCCCcEEEECCCCCCCCCcEEEEEEccC
Q 006746 440 ANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL--QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDW 517 (632)
Q Consensus 440 ~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l--~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~ 517 (632)
++|+.+.+. .+.+|.+.+.++|++.|.++ +++. .+.-. ...|.++.|.+.+.
T Consensus 366 -------------aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~-----~v~~~-----~~~g~~~~~~~~~~ 419 (472)
T 1ohv_A 366 -------------EVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQ-----FISRV-----RGRGTFCSFDTPDE 419 (472)
T ss_dssp -------------HHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTT-----TCEEE-----EEETTEEEEECSSH
T ss_pred -------------HHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCC-----cEEee-----cCCceEEEEEeCCh
Confidence 677777653 45788999999999999887 2321 12111 12467888765431
Q ss_pred CCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHH
Q 006746 518 KREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFE 597 (632)
Q Consensus 518 ~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~e 597 (632)
.....+.+.+.++||.++.+ +.++||+|+++.+|.+
T Consensus 420 ----~~~~~~~~~l~~~Gv~~~~~----------------------------------------g~~~iRi~~~~~~t~e 455 (472)
T 1ohv_A 420 ----SIRNKLISIARNKGVMLGGC----------------------------------------GDKSIRFRPTLVFRDH 455 (472)
T ss_dssp ----HHHHHHHHHHHHTTEECEEE----------------------------------------TTTEEEECCCTTCCHH
T ss_pred ----hHHHHHHHHHHHCCeEEecC----------------------------------------CCCEEEEECCCCCCHH
Confidence 12334444344578876521 2359999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 006746 598 DVYRLWAFVAQFLD 611 (632)
Q Consensus 598 DV~rlv~~l~~~l~ 611 (632)
||+++++.|++++.
T Consensus 456 ~i~~~~~~l~~~l~ 469 (472)
T 1ohv_A 456 HAHLFLNIFSDILA 469 (472)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-14 Score=153.80 Aligned_cols=345 Identities=11% Similarity=0.070 Sum_probs=206.2
Q ss_pred CCceEeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~gl------~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+.-|||+++.-. -++.+++++.+.+.... .. . +..-..+...+.+++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--------~~---------~-------~~~~~~~~~~~l~~~la 96 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA--------GA---------T-------ILSASNAPAVTLAERLL 96 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS--------CS---------C-------SSSSEEHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc--------Cc---------c-------ccccCCHHHHHHHHHHH
Confidence 4577999886544 67888888665432210 00 0 00012356778999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHHHHHhcCCE--------------EEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIRTSEKRGAR--------------VMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~--------------v~~ 244 (632)
++++...+ ..|+||+|+|+|+..++.... +.++++|+ ....||......+ .. .|.. +..
T Consensus 97 ~~~~~~~~-~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 171 (439)
T 3dxv_A 97 ASFPGEGT-HKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSM-AF---SGHSVQADAAKADGLILLPYP 171 (439)
T ss_dssp HTTTCTTT-EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHH-CC----------------CEEEECCC
T ss_pred HhCCCCCC-CEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHH-hh---cCCCchhhccccCCCCCCcEE
Confidence 99976541 279999999999999988731 12455655 4556665322221 11 1111 122
Q ss_pred EeccCCcccc-----CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-C
Q 006746 245 AEFSWPRLRI-----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-P 313 (632)
Q Consensus 245 v~~~~~~~~i-----~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g 313 (632)
++.+. .... ++++|+++|... ...++++|++..+.+.+|...| ++ |.++|+++|+++++|.++.. +
T Consensus 172 ~~~~~-~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g 248 (439)
T 3dxv_A 172 DPYRP-YRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLA 248 (439)
T ss_dssp CSSSC-BTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred cCCCc-ccccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 23221 1111 588999998521 1235688999999999999999 99 99999999999999998762 2
Q ss_pred CC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 314 KD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 314 ~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
.. +..++.....+|++ ++-|.+|. ...+|+++.+++.++.+.+...+
T Consensus 249 ~~g~~~~~~~~~~~~di~--s~sK~~~~-G~riG~~~~~~~~~~~~~~~~~~---------------------------- 297 (439)
T 3dxv_A 249 RSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPLSAVIAPAEILDCASAFAMQ---------------------------- 297 (439)
T ss_dssp TTSSSSGGGGTTCCCSEE--EECGGGGT-TSCCEEEEEEHHHHTSCSSSSCC----------------------------
T ss_pred cCchhhHHHhcCCCCCEE--EEcchhcC-CcceEEEEECHHHHhhhcCCCcC----------------------------
Confidence 11 11223333468887 56698873 23479999998877655442111
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGR 471 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~ 471 (632)
+|. ..+++ ..+. .++|+.+.+ +.+.++++
T Consensus 298 ---------~t~--~~~~~-------------~~aa------------------------~aal~~~~~---~~~~~~~~ 326 (439)
T 3dxv_A 298 ---------TLH--GNPIS-------------AAAG------------------------LAVLETIDR---DDLPAMAE 326 (439)
T ss_dssp ---------TTT--TCHHH-------------HHHH------------------------HHHHHHHHH---TTHHHHHH
T ss_pred ---------CCc--ccHHH-------------HHHH------------------------HHHHHHHHh---cCHHHHHH
Confidence 000 00111 1111 156665554 34556677
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC----ccCHHHHHHHHHhCCcEEccCccCChH
Q 006746 472 CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE----KIEPVLVQKLADRENISLSYGSLHHIW 547 (632)
Q Consensus 472 ~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~----~i~~~~V~kla~~~gI~lr~G~~c~~~ 547 (632)
.+.+++++.|.++... .|.+.... ..|.++.+.+.+.... ......+.+.+.++||.++.|.
T Consensus 327 ~~~~~~~~~l~~~~~~----~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----- 392 (439)
T 3dxv_A 327 RKGRLLRDGLSELAKR----HPLIGDIR-----GRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVG----- 392 (439)
T ss_dssp HHHHHHHHHHHHHHHH----CTTEEEEE-----EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEES-----
T ss_pred HHHHHHHHHHHHHHHh----CCCeEEEE-----EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecC-----
Confidence 7777777777665100 13343321 2577777776431110 0123334444444588876441
Q ss_pred HHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 548 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...+.||+++++..|.+|++++++.|+++++.
T Consensus 393 ---------------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 393 ---------------------------------MNGNVLEFTPPLTITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp ---------------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12368999999999999999999999998864
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-14 Score=155.52 Aligned_cols=222 Identities=12% Similarity=0.092 Sum_probs=137.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||.++. |.-++.+++++.+.+..... ..... + -..+...+.+++++
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~------------------~~~~~----~-~~~~~~~~la~~l~ 104 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPF------------------YNTFF----K-TTHPAVVELSSLLA 104 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSC------------------CCTTS----S-SCCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccc------------------ccccc----c-cCCHHHHHHHHHHH
Confidence 56789998764 44478888886654321100 00000 0 02355678899999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-------CCCCeEEE-eccccchhhHHHHHH--------HHhcCCEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF-------MSVKNLLT-VYDYESEAVEAMIRT--------SEKRGARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~-------~~gd~ilt-~~d~~s~~v~~~~~~--------a~~~G~~v~~ 244 (632)
++++.+.+ .|+||+|+|+|+..++..+-. ..+++|++ ...||......+.-. .......+..
T Consensus 105 ~~~~~~~~--~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (459)
T 4a6r_A 105 EVTPAGFD--RVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAH 182 (459)
T ss_dssp HHSCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEE
T ss_pred HhCCCCCC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEE
Confidence 99987665 799999999999998877621 14566664 456665322221100 0001123445
Q ss_pred EeccC----CccccC--------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEe
Q 006746 245 AEFSW----PRLRIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILID 307 (632)
Q Consensus 245 v~~~~----~~~~i~--------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvD 307 (632)
++... ... .+ .++|+++|.+.. ..++.+|++..+.+.+|.+.| ++ |.++|+++|+++++|
T Consensus 183 ~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D 259 (459)
T 4a6r_A 183 IEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVAD 259 (459)
T ss_dssp ECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred eCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 55321 111 23 678888887421 124688888888889999998 88 999999999999999
Q ss_pred cccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 308 ACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 308 aaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
-++. ++.. +...+.....||++++| |.+|.....+|++++++++++.+.
T Consensus 260 Ev~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 260 EVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKRVAEGLI 311 (459)
T ss_dssp CTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHH
T ss_pred ccccCCCcccccchHhhcCCCCCeeehh--hhhcCCCCCccceeeCHHHHHHhh
Confidence 9876 3321 11122223468988776 966521135799999888765553
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-15 Score=155.18 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC--eEEEeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK--NLLTVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd--~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
....+.|+++++++|.+ ..+|++|+|+|+.+++.++ ..+|| .|++...+|...... ...+...|++++.++.
T Consensus 47 ~~~~~l~~~la~~~~~~----~~i~~~~G~~a~~~al~~~-~~~gd~~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v~~ 120 (357)
T 3lws_A 47 AIIEPFEQKFADVLGMD----DAVFFPSGTMAQQVALRIW-SDETDNRTVAYHPLCHLEIHEQ-DGLKELHPIETILVGA 120 (357)
T ss_dssp TTHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-HHHHTCCEEEECTTCHHHHSST-THHHHHSSCEEEECSC
T ss_pred hHHHHHHHHHHHHhCCC----cEEEecCcHHHHHHHHHHH-hhcCCCcEEEecccceeeeecc-chhhhccCcEEEEecC
Confidence 34568999999999985 2466688999999888877 45677 566544333211211 1123446888887774
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccc---hH-HHHHHhhCCcEEEEecccc------CCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYP---YL-WMRIAQENDWHILIDACAL------GPKDM 316 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~p---l~-i~~~a~~~g~~vlvDaaq~------~g~~m 316 (632)
+++.+|+++|+++. + ++++++...+|+| |..+| ++ |+++|+++|+++++|.++. .+...
T Consensus 121 --~~~~~d~~~l~~~~--~------~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~ 190 (357)
T 3lws_A 121 --ADRLMTLDEIKALP--D------IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTA 190 (357)
T ss_dssp --TTSCCCHHHHHTCC--S------CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCH
T ss_pred --CCCCcCHHHHhcCc--C------cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCCh
Confidence 45678999988751 1 5899999999998 99886 77 8899999999999998865 12211
Q ss_pred CCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 317 DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
..+. ..+|.++.|++|.||. |.| |+++.+++.++.+
T Consensus 191 ~~~~---~~~d~~~~s~sK~~~~-~~g-g~~~~~~~~~~~~ 226 (357)
T 3lws_A 191 AEIA---GLFDSIYISFYKGLGG-IAG-AILAGPAAFCQTA 226 (357)
T ss_dssp HHHH---TTSSEEEEESSSTTCC-SSC-EEEEECHHHHHHH
T ss_pred HHHH---hcCCEEEEeccccCCC-Cce-EEEEcCHHHHHHH
Confidence 1111 3469999999998854 888 8888877665444
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-14 Score=156.42 Aligned_cols=346 Identities=12% Similarity=0.033 Sum_probs=212.4
Q ss_pred CCc--eEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHH
Q 006746 107 SNH--TCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR 178 (632)
Q Consensus 107 ~~~--vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ 178 (632)
+++ -|||..+. |.-++.+++++.+.+...... . ++.-..+...+.+++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~------------------~------~~~~~~~~~~~L~e~ 126 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV------------------M------FGGLTHEPAARLAKL 126 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCC------------------C------SSSEECHHHHHHHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCc------------------c------ccccCCHHHHHHHHH
Confidence 456 89998763 455888888876543221000 0 001123556789999
Q ss_pred HHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCC------CCCC-eEEE-eccccchhhHHHHH---------HHHhcCCE
Q 006746 179 IMDFLNISENDYGMVFTANRTSAFKLLAESYPF------MSVK-NLLT-VYDYESEAVEAMIR---------TSEKRGAR 241 (632)
Q Consensus 179 ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~------~~gd-~ilt-~~d~~s~~v~~~~~---------~a~~~G~~ 241 (632)
++++++.+.+ .|+||+|+|+|+.+++..+.. ++|+ +|++ ...||......+.. ........
T Consensus 127 la~~~~~~~~--~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (457)
T 3tfu_A 127 LVDITPAGLD--TVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAA 204 (457)
T ss_dssp HHHHSSTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCC
T ss_pred HHHhCCCCcC--EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCC
Confidence 9999987654 799999999999998776521 1455 5654 45666532222110 00111223
Q ss_pred EEEEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccc----hH-HHHHHhhCCcEEEEecccc-CC
Q 006746 242 VMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP----YL-WMRIAQENDWHILIDACAL-GP 313 (632)
Q Consensus 242 v~~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~-~g 313 (632)
+..++.... ....+.++|+++|++.. .++++|++.. +++.+|...| ++ +.++|+++|+++++|.++. +|
T Consensus 205 ~~~~~~p~~~~~~~d~~~le~~l~~~~---~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g 281 (457)
T 3tfu_A 205 QVFAPQVPRDYDPAYSAAFEAQLAQHA---GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFG 281 (457)
T ss_dssp CEEECCCCSSCCHHHHHHHHHHHHHHG---GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ceEecCCCcccCHHHHHHHHHHHHhCC---CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCc
Confidence 444444211 11246788999887421 2468888888 9999999987 88 9999999999999999876 23
Q ss_pred CC--CCCCCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccc
Q 006746 314 KD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 390 (632)
Q Consensus 314 ~~--m~~ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 390 (632)
.. +..++.....||++++ -|.+|. . ..+|+++.++++++.+..... +.. .
T Consensus 282 r~G~~~a~~~~~~~pdiit~--sK~l~g-G~~~lG~v~~~~~i~~~~~~~~~-~~~---------~-------------- 334 (457)
T 3tfu_A 282 RTGALFAADHAGVSPDIMCV--GKALTG-GYLSLAATLCTADVAHTISAGAA-GAL---------M-------------- 334 (457)
T ss_dssp TTSSSSTHHHHTCCCSEEEE--CGGGGT-TSSCCEEEEEEHHHHHHHHHSSS-CSC---------C--------------
T ss_pred cccchhHhHhcCCCceEEEE--ChhhhC-CCcceEEEEEcHHHHHHhhccCC-Cce---------e--------------
Confidence 21 1112222346898855 496662 2 258999999988765531100 000 0
Q ss_pred cchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHH
Q 006746 391 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 470 (632)
Q Consensus 391 ~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~ 470 (632)
..+| |. .|.....+. .++|+.+.+ +.+.+++
T Consensus 335 --------~~~t--~~------------~n~~a~aaa------------------------~aaL~~~~~---~~~~~~~ 365 (457)
T 3tfu_A 335 --------HGPT--FM------------ANPLACAVS------------------------VASVELLLG---QDWRTRI 365 (457)
T ss_dssp --------CCCT--TT------------TCHHHHHHH------------------------HHHHHHHHT---SCHHHHH
T ss_pred --------EecC--CC------------cCHHHHHHH------------------------HHHHHHHhh---hHHHHHH
Confidence 0000 00 011111111 156666654 3567888
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHh
Q 006746 471 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD 550 (632)
Q Consensus 471 ~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~ 550 (632)
+.+.+++++.|.++.. .|.+..+ ...|.++.|.+.+. .+...+.+.+.++||.++..
T Consensus 366 ~~~~~~l~~~L~~l~~-----~~~v~~v-----r~~G~~~~i~l~~~----~~~~~~~~~l~~~Gv~v~~~--------- 422 (457)
T 3tfu_A 366 TELAAGLTAGLDTARA-----LPAVTDV-----RVCGAIGVIECDRP----VDLAVATPAALDRGVWLRPF--------- 422 (457)
T ss_dssp HHHHHHHHHHHGGGGG-----STTEEEE-----EECSSCEEEEESSC----CCHHHHHHHHHHTTEECCCB---------
T ss_pred HHHHHHHHHHHHHHhc-----CCCeeee-----ecCCeEEEEEECCc----ccHHHHHHHHHHCCeEEEec---------
Confidence 8899999999988731 2444322 12477888877652 34555665555669887621
Q ss_pred HHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 551 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 551 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
...||+++.+..|.|||+++++.|+++++.
T Consensus 423 --------------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 423 --------------------------------RNLVYAMPPYICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp --------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 148999999999999999999999998864
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-15 Score=160.94 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcC------CCCCCccEEEeCCHHHHHHHHHhhCC-------CCCCCeEEEec-cccchhhHHHHHHHHhc
Q 006746 173 SAMKKRIMDFLN------ISENDYGMVFTANRTSAFKLLAESYP-------FMSVKNLLTVY-DYESEAVEAMIRTSEKR 238 (632)
Q Consensus 173 ~~~R~~ia~~l~------a~~~ey~vvft~naT~al~lv~~sl~-------~~~gd~ilt~~-d~~s~~v~~~~~~a~~~ 238 (632)
.+.|+.|+++++ ++++ .|++|+|+|+|+.+++.++. +++||+|++.. .|+. ....++..
T Consensus 103 ~~lr~aia~~~~~~~~~~~~~~--~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~-----~~~~~~~~ 175 (427)
T 2hox_A 103 FELEKTIKELHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV-----FREQTKYF 175 (427)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH-----HHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCcCCCCC--EEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCccc-----HHHHHHHc
Confidence 578888888886 5554 79999999999999999983 78999987654 4432 23445667
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCC
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDS 318 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ 318 (632)
|++++... ++.++|++++++ ++++++++..+|+||..+| +++ + ++..+.|.+.+.+.. ..
T Consensus 176 g~~~~~~~-------~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l---~--~~~~i~d~~~~~~~~-s~ 235 (427)
T 2hox_A 176 DKKGYVWA-------GNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI---K--GCKSIYDMVYYWPHY-TP 235 (427)
T ss_dssp CBTTEEEE-------EEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS---T--TCEEEEECTTCSTTT-SC
T ss_pred CCeeeeec-------CCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH---c--CCCEEEeecccCCCC-Cc
Confidence 88876443 344566655543 3589999999999999999 733 3 567888887654321 12
Q ss_pred CCCCCCCCcEEEEccccccCCCCCc--eEEEEEe-CCCcccc
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSG--FGCLFVK-KSTVPIL 357 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr-~~~~~~L 357 (632)
+.+. .+.|+++.|++|.+| +.| +|+++++ +++++.+
T Consensus 236 ~~~~-~~~~i~~~S~SK~~g--~~G~RiG~~~~~~~~l~~~l 274 (427)
T 2hox_A 236 IKYK-ADEDILLFTMSKFTG--HSGSRFGWALIKDESVYNNL 274 (427)
T ss_dssp CCSC-BCCSEEEEEHHHHTS--CGGGCCEEEEECCHHHHHHH
T ss_pred cccC-CCceEEEEeChhcCC--CCCceEEEEEECCHHHHHHH
Confidence 2332 567999999999999 457 7999995 5555444
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.9e-17 Score=172.53 Aligned_cols=173 Identities=12% Similarity=0.149 Sum_probs=121.9
Q ss_pred HHHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 173 SAMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 173 ~~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
.+.|+.+++++ | ++++ .|++|+|+++|+.+++.++ .++||+|++. ..|++ . ...++..|++++.+
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~-~----~~~~~~~g~~~~~~ 140 (392)
T 3b1d_A 69 DELLQAVLDWEKSEHQYSFDKE--DIVFVEGVVPAISIAIQAF-TKEGEAVLINSPVYPP-F----ARSVRLNNRKLVSN 140 (392)
Confidence 35566666654 5 4444 7999999999999999998 6789987654 45553 1 23446678999888
Q ss_pred eccCCc--cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC----CCC
Q 006746 246 EFSWPR--LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKD 315 (632)
Q Consensus 246 ~~~~~~--~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~----g~~ 315 (632)
+.++.+ ..+++++|++++.+. +++++++++.+|+||..+| ++ |+++|+++|+++++|.++.. +..
T Consensus 141 ~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 215 (392)
T 3b1d_A 141 SLKEENGLFQIDFEQLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHE 215 (392)
Confidence 875332 347889999888631 2478889999999999998 77 88999999999999998765 210
Q ss_pred CCC-CCCCC--CCCcEEEEccccccCCCCCceEEEEEeCC-CccccC
Q 006746 316 MDS-FGLSL--VRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILV 358 (632)
Q Consensus 316 m~~-ldls~--~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~-~~~~L~ 358 (632)
..+ ..+.. .+.++++.|++|.+|.+...+|+++++++ .++.+.
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 262 (392)
T 3b1d_A 216 HVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFK 262 (392)
Confidence 011 12211 45568999999998842224688888654 555443
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=156.04 Aligned_cols=176 Identities=13% Similarity=0.074 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec--cccchhhHHHH------HHHHhcCCEE
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY--DYESEAVEAMI------RTSEKRGARV 242 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~--d~~s~~v~~~~------~~a~~~G~~v 242 (632)
..+++++.+++++|++.....++|+ |+|+|+.+++.++ +++||+|++.. .|.+ ....+. ..++..|+++
T Consensus 66 ~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al-~~~Gd~Vl~~~~~~y~~-~~~~~~l~g~~~~~~~~~G~~~ 142 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGI-LRPGDELLYITGKPYDT-LEEIVGVRGKGVGSFKEYNIGY 142 (431)
T ss_dssp HHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTT-CCTTCEEEECSSSCCTT-HHHHTTSSSCSSSCSGGGTCEE
T ss_pred hHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHh-CCCCCEEEEeCCCCchh-HHHHHhhcccccchHHHcCCEE
Confidence 3678999999999997542223366 7799999999988 78999988765 4443 232221 3345689999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEec----cCCCCccccchH-HHHHHhh--CCcEEEEeccccCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYL-WMRIAQE--NDWHILIDACALGPKD 315 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~----~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~g~~ 315 (632)
+.++.+ +++.+|+++|+++|+++ +++|.+.. ..+.+|...|++ |+++|++ +|+++++|.++..+.
T Consensus 143 ~~v~~~-~~~~~d~e~l~~~l~~~------tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~- 214 (431)
T 3ht4_A 143 NAVPLT-EGGLVDFEAVAAAIHSN------TKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFI- 214 (431)
T ss_dssp EECCBC-TTSSBCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTS-
T ss_pred EEeCCC-CCCCcCHHHHHhhcCCC------CeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhc-
Confidence 999987 46789999999998754 58999987 677778888899 9999999 999999999988764
Q ss_pred CCCCCCCCCCCcEEEEccccccCC--CCCceEEEEEeCCCccccCC
Q 006746 316 MDSFGLSLVRPDFLICSFYQIFGE--NPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 316 m~~ldls~~~~Df~~~S~hK~~G~--~P~G~G~L~Vr~~~~~~L~~ 359 (632)
...+...+++|+++.|++|.+|. .|.| |+++.++++++.+..
T Consensus 215 -~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~ 258 (431)
T 3ht4_A 215 -EEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAY 258 (431)
T ss_dssp -SSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHH
T ss_pred -cCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHH
Confidence 12223345789999999997542 2667 999998877665543
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=150.78 Aligned_cols=348 Identities=12% Similarity=0.058 Sum_probs=208.9
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||+.+. |.-++.+++++.+.+..... ...... -..+...+..++++
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~------------------~~~~~~-----~~~~~~~~lae~l~ 109 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPY------------------YNTFFK-----TTHVPAIALAQKLA 109 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSC------------------CCSSSS-----EECHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccc------------------cccccc-----cCCHHHHHHHHHHH
Confidence 56789998763 45578888887654322100 000000 02345568899999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-------CCCCeEEE-eccccchhhHHHHHHH---Hh----cCCEEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF-------MSVKNLLT-VYDYESEAVEAMIRTS---EK----RGARVMSA 245 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~-------~~gd~ilt-~~d~~s~~v~~~~~~a---~~----~G~~v~~v 245 (632)
++++.+.+ .|+||+++++|+..++..+.- ..+++|++ ...||......+.-.. .+ ....+..+
T Consensus 110 ~~~~~~~~--~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v 187 (472)
T 3hmu_A 110 ELAPGDLN--HVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHI 187 (472)
T ss_dssp HHSCTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEE
T ss_pred HhCCCCCC--EEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEe
Confidence 99877554 799999999999998876521 13456654 4566653322211000 00 11134555
Q ss_pred eccC----CccccC--------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEec
Q 006746 246 EFSW----PRLRIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDA 308 (632)
Q Consensus 246 ~~~~----~~~~i~--------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDa 308 (632)
+... ... .+ .++|+++|++.. ..++.+|++..+.+.+|.+.| ++ +.++|+++|+++++|-
T Consensus 188 ~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DE 264 (472)
T 3hmu_A 188 NQPNWWAEGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADE 264 (472)
T ss_dssp CCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 5421 011 22 678888886421 124688999889999999998 88 9999999999999999
Q ss_pred ccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCC
Q 006746 309 CAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC 384 (632)
Q Consensus 309 aq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~ 384 (632)
++. +|.. +...+.....||++++| |.+|. . -.+|+++.++++++.+.+..+. .
T Consensus 265 v~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~g-g~~plG~v~~~~~i~~~~~~~~~~---------------~----- 321 (472)
T 3hmu_A 265 VICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSS-GYAPIGGSIVCDEVAHVIGKDEFN---------------H----- 321 (472)
T ss_dssp TTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTT-TSSCCEEEEEEHHHHHHHTTSCBC---------------C-----
T ss_pred cccCCcccCccchhHHhCCCCceeeec--hhhhc-CCcceEEEEECHHHHHhcccCCcc---------------c-----
Confidence 877 3321 11111123468998876 96663 2 2479999999887666321100 0
Q ss_pred CCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHH
Q 006746 385 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 464 (632)
Q Consensus 385 ~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~ 464 (632)
.+| |. .|.....+. .++|+.+.+ +
T Consensus 322 ---------------~~t--~~------------~np~a~aAa------------------------~aaL~~~~~---~ 345 (472)
T 3hmu_A 322 ---------------GYT--YS------------GHPVAAAVA------------------------LENLRILEE---E 345 (472)
T ss_dssp ---------------CCT--TT------------TCHHHHHHH------------------------HHHHHHHHH---T
T ss_pred ---------------cCC--CC------------CCHHHHHHH------------------------HHHHHHHHH---h
Confidence 000 00 000111111 156766654 3
Q ss_pred HHHHHHH-HHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC--CccC------HHHHHHHHHhCC
Q 006746 465 MISRRGR-CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR--EKIE------PVLVQKLADREN 535 (632)
Q Consensus 465 ~I~~r~~-~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G--~~i~------~~~V~kla~~~g 535 (632)
.+.++++ .+.+++++.|.+|.. .|.+..+ ...|.++.|.+.+... +.++ ...+.+.+.++|
T Consensus 346 ~~~~~~~~~~~~~l~~~L~~l~~-----~~~v~~v-----r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 415 (472)
T 3hmu_A 346 NILDHVRNVAAPYLKEKWEALTD-----HPLVGEA-----KIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANN 415 (472)
T ss_dssp THHHHHHHTHHHHHHHHHHGGGG-----STTEEEE-----EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCeEEE-----EecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCC
Confidence 4567777 788888888877631 2444332 1257777887754211 1111 234444444568
Q ss_pred cEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 536 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 536 I~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
|.++.+ + ++||+++.+..|.|||+++++.|+++++.
T Consensus 416 v~v~~~----------------------------------------g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 416 LIMRHV----------------------------------------G-DRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp BCCEEE----------------------------------------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEec----------------------------------------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 776532 2 69999999999999999999999998875
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-13 Score=144.60 Aligned_cols=220 Identities=10% Similarity=0.082 Sum_probs=130.4
Q ss_pred CCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||.++ .|.-++.+++++.+.+..... .+.. +. ..+...+.+++++
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~------------------~~~~-----~~-~~~~~~~la~~l~ 97 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAH------------------STLL-----GM-TNVPATQLAETLI 97 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSC------------------CCCS-----SS-EEHHHHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccC------------------cccc-----cc-CCHHHHHHHHHHH
Confidence 5677999876 345578888887654432100 0000 00 1245568889999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCCC---CC----CeEEE-eccccchhhHHHHHHHH---hc-----CCEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPFM---SV----KNLLT-VYDYESEAVEAMIRTSE---KR-----GARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~~---~g----d~ilt-~~d~~s~~v~~~~~~a~---~~-----G~~v~~ 244 (632)
++++...+ .|+||+|+|+|+..++..+.-. +| ++|++ ...||......+.-... +. ...+..
T Consensus 98 ~~~~~~~~--~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (448)
T 3dod_A 98 DISPKKLT--RVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYK 175 (448)
T ss_dssp HHSCTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEE
T ss_pred HhCCCCCC--EEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceE
Confidence 99976544 7999999999999988775211 34 77664 44566422211110000 00 122334
Q ss_pred EeccCCccc-----------cCHHHHHHHHHhcCcCCCceeEEEEeccC-CCCccccc----hH-HHHHHhhCCcEEEEe
Q 006746 245 AEFSWPRLR-----------INSEKLRKMVVSKGKKKKQRGLFVFPLHS-RMTGARYP----YL-WMRIAQENDWHILID 307 (632)
Q Consensus 245 v~~~~~~~~-----------i~~~~l~~~i~~~~~~~~~~~Lv~~~~~s-n~TG~~~p----l~-i~~~a~~~g~~vlvD 307 (632)
++.. ...+ .+.++|+++|... ..++++|++..+. +.+|.+.| ++ +.++|+++|+++++|
T Consensus 176 ~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~D 251 (448)
T 3dod_A 176 APIP-YVYRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVD 251 (448)
T ss_dssp ECCC-CCTTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred eCCC-ccccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEe
Confidence 4432 1111 2478899888731 1245777777777 89998887 88 999999999999999
Q ss_pred cccc-CCCC--CCCCCCCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCC
Q 006746 308 ACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 308 aaq~-~g~~--m~~ldls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~ 359 (632)
-++. ++.. +...+.....+|++++| |.+|. . ..+|+++.++++++.+.+
T Consensus 252 Ev~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~-G~~~ig~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 252 EVATGFGRTGKMFACEHENVQPDLMAAG--KGITG-GYLPIAVTFATEDIYKAFYD 304 (448)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT-TSSCCEEEEEEHHHHHTTCS
T ss_pred ccccCCCcccchhhhhhcCCCCCEEEec--ccccC-CcCceEEEEECHHHHHHhhh
Confidence 9876 3321 11222233468988766 97763 3 257999999888776654
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-13 Score=149.52 Aligned_cols=352 Identities=12% Similarity=0.074 Sum_probs=209.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..+. |.-++.+++++.+.+..... +... + -..+...+..++++
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~------------------~~~~-----~-~~~~~~~~la~~l~ 107 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPY------------------ASPW-----Y-MATSPAARLAEKIA 107 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCC------------------CCTT-----T-CBCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccC------------------cccC-----c-cCCHHHHHHHHHHH
Confidence 56779998654 55688888887654332100 0000 0 02355678889999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-------CCCCeEEE-eccccchhhHHHHHHHHh-----c---CCEEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF-------MSVKNLLT-VYDYESEAVEAMIRTSEK-----R---GARVMS 244 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~-------~~gd~ilt-~~d~~s~~v~~~~~~a~~-----~---G~~v~~ 244 (632)
++++.+.+ .|+||+|+|+|+..++..+.- ..+++|++ ...||......+.-.... . ...+..
T Consensus 108 ~~~~~~~~--~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
T 3i5t_A 108 TLTPGDLN--RIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISF 185 (476)
T ss_dssp TTSSTTCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEE
T ss_pred hcCCCCcC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEE
Confidence 99976554 799999999999998877521 22445654 456665332221100000 0 112344
Q ss_pred EeccCC-cc-ccC--------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecc
Q 006746 245 AEFSWP-RL-RIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 245 v~~~~~-~~-~i~--------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaa 309 (632)
++.... .. ..+ .++|+++|.+.. ..++.+|++..+.+.+|.+.| ++ +.++|+++|+++++|-+
T Consensus 186 ~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv 263 (476)
T 3i5t_A 186 LSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEV 263 (476)
T ss_dssp ECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred eCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 443210 00 111 678888887421 124688888889999998877 88 99999999999999998
Q ss_pred ccC-CCC--CCCCC-CCCCCCcEEEEccccccCCCC-CceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCC
Q 006746 310 ALG-PKD--MDSFG-LSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSS 383 (632)
Q Consensus 310 q~~-g~~--m~~ld-ls~~~~Df~~~S~hK~~G~~P-~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~ 383 (632)
+.. |.. +.... .....||++++| |.+|. . ..+|++++++++++.+.+.... +.. .
T Consensus 264 ~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~~---------~------- 324 (476)
T 3i5t_A 264 VTGFGRCGEWFASEKVFGVVPDIITFA--KGVTS-GYVPLGGLAISEAVLARISGENAKGSWF---------T------- 324 (476)
T ss_dssp TTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCEE---------C-------
T ss_pred ccCCccccCceeeecccCCCcchhhhh--hhhcC-CCcCeEEEEECHHHHHHHhcCCcccccc---------c-------
Confidence 763 321 11112 223468998776 97663 2 3479999998877666542100 000 0
Q ss_pred CCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH
Q 006746 384 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 463 (632)
Q Consensus 384 ~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl 463 (632)
..+| |. .|.....+. .++|+.+.+
T Consensus 325 ---------------~~~t--~~------------~np~a~aAa------------------------~aaL~~~~~--- 348 (476)
T 3i5t_A 325 ---------------NGYT--YS------------NQPVACAAA------------------------LANIELMER--- 348 (476)
T ss_dssp ---------------CCCT--TT------------TCHHHHHHH------------------------HHHHHHHHH---
T ss_pred ---------------ccCC--CC------------cCHHHHHHH------------------------HHHHHHHHh---
Confidence 0011 10 011111111 156766654
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccC-------HHHHHHHHHhCCc
Q 006746 464 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE-------PVLVQKLADRENI 536 (632)
Q Consensus 464 ~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~-------~~~V~kla~~~gI 536 (632)
+.+.++++.+.+++++.|.+|.. .|.+..+- ..|.++.+.+.+.....-+ ...+.+.+.++||
T Consensus 349 ~~~~~~~~~~~~~l~~~L~~l~~-----~~~v~~v~-----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 418 (476)
T 3i5t_A 349 EGIVDQAREMADYFAAALASLRD-----LPGVAETR-----SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGL 418 (476)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTTT-----STTEEEEE-----EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCeEEEE-----ecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCC
Confidence 45677888888999999887731 24443321 2567777777653211111 2334444445687
Q ss_pred EEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 537 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 537 ~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.++. .+ +.||+++++..|.+||+++++.|+++|+.
T Consensus 419 ~v~~----------------------------------------~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 419 IVRP----------------------------------------LG-DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp ECEE----------------------------------------ET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEe----------------------------------------cC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 7652 12 69999999999999999999999998865
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=148.96 Aligned_cols=206 Identities=15% Similarity=0.147 Sum_probs=133.1
Q ss_pred CCceEeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~g------l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||+++.. .-++.+++++.+.+.... .++. ......+.+++++
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--------------------------~~~~-~~~~~~~l~~~la 105 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV--------------------------LYGT-PTALEVKFAKMLK 105 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS--------------------------CCSS-CCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc--------------------------CCCC-CCHHHHHHHHHHH
Confidence 567899987653 347888888765332110 0000 1234457888999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHHHHHhcCC------------------
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIRTSEKRGA------------------ 240 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~------------------ 240 (632)
++++ +++ .|+||+|+|+|+.+++.... ..++++|++ ...||......+. ..|.
T Consensus 106 ~~~~-~~~--~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~ 178 (434)
T 3l44_A 106 EAMP-ALD--KVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLV----AAGSGPSTLGTPDSAGVPQSIA 178 (434)
T ss_dssp HHCT-TCS--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGB----C-------CCCBSSTTCCHHHH
T ss_pred HhCC-CCC--EEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHh----hcCCcccccCCCCcCCCCCcCC
Confidence 9997 443 79999999999999887652 125667664 4455542221110 0111
Q ss_pred -EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC--
Q 006746 241 -RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-- 312 (632)
Q Consensus 241 -~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-- 312 (632)
.+..+|. -|.++|+++|.+.. .++.+|++..+.+.+|...| ++ |.++|+++|+++++|.++..
T Consensus 179 ~~~~~~~~------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~ 249 (434)
T 3l44_A 179 QEVITVPF------NNVETLKEALDKWG---HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFR 249 (434)
T ss_dssp TTEEEECT------TCHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTT
T ss_pred CceEecCc------ccHHHHHHHHHhCC---CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccccee
Confidence 2222222 17889999987421 24688888888899999998 99 99999999999999999862
Q ss_pred -CCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 313 -PKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 313 -g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
|. +..++.-...+|++++| |.+|. +..+|+++.++++++.+.+
T Consensus 250 ~g~-~~~~~~~~~~~di~t~s--K~~~~-G~~iG~~~~~~~i~~~~~~ 293 (434)
T 3l44_A 250 FMY-GGAQDLLGVTPDLTALG--KVIGG-GLPIGAYGGKKEIMEQVAP 293 (434)
T ss_dssp SSS-SCHHHHHTCCCSEEEEE--GGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred ccc-cHHHHHcCCCCCeeehh--hhhcC-CcCeeeEEEcHHHHHhhcc
Confidence 21 01111223457877655 97763 5679999998888766643
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=148.91 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=201.2
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||+.+. |.-++.+++++.+.+..... | . +..-..+...+.+++++
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~-----~------------~-------~~~~~~~~~~~la~~l~ 117 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH-----T------------C-------FMVTPYEQYVQVAELLN 117 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC-----C------------T-------TTTSCCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc-----c------------c-------cCcCCCHHHHHHHHHHH
Confidence 56789998864 44588888886654321100 0 0 00001245568899999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-CCCCeEE-EeccccchhhHHHHHHHH-----hc-----CCEEEEEecc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF-MSVKNLL-TVYDYESEAVEAMIRTSE-----KR-----GARVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~-~~gd~il-t~~d~~s~~v~~~~~~a~-----~~-----G~~v~~v~~~ 248 (632)
++++.+. ...|+||+|+|+|+..++..... ..+++|+ ....||......+ .... +. ...+..+++.
T Consensus 118 ~~~~~~~-~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (453)
T 4ffc_A 118 ALTPGDH-DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTM-ALTAKSMPYKSQFGPFAPEVYRMPAS 195 (453)
T ss_dssp HHSSCSS-CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHH-HHCCCCTTTTTTSCSCCSSEEEECCC
T ss_pred HhCCCCC-CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHH-hhcCCCcccccCCCCCCCCcEEeCCC
Confidence 9998642 12799999999999998865422 2345665 4556775322221 1100 01 1146666654
Q ss_pred C----CccccC-------HHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC
Q 006746 249 W----PRLRIN-------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 249 ~----~~~~i~-------~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~ 312 (632)
. +.+... .+.|++.+.. ..+.+|++..+.+..|...| ++ +.++|+++|+++++|-++..
T Consensus 196 ~~~~~~~g~~~~~~~~~~~~~l~~~i~~-----~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g 270 (453)
T 4ffc_A 196 YPLRDEPGLTGEEAARRAISRIETQIGA-----QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTG 270 (453)
T ss_dssp CTTTSCTTCCHHHHHHHHHHHHHHHTCG-----GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ccccCccccchHHHHHHHHHHHHHhcCC-----CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccC
Confidence 1 111111 2334333322 24678888888888899988 88 99999999999999998762
Q ss_pred -CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcc
Q 006746 313 -PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 389 (632)
Q Consensus 313 -g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 389 (632)
+.. +...+.....+|++++| |.+|. ...+|+++.++++++.+.+...+++ |
T Consensus 271 ~g~~g~~~a~~~~~~~pdi~t~s--K~~~~-G~~~G~~~~~~~i~~~~~~~~~~~t----------~------------- 324 (453)
T 4ffc_A 271 FARTGAWFASEHEGIVPDIVTMA--KGIAG-GMPLSAVTGRAELMDAVYAGGLGGT----------Y------------- 324 (453)
T ss_dssp TTTTSSSSTHHHHTCCCSEEEEC--GGGGT-TSSCEEEEEEHHHHTTSCTTSSCCS----------S-------------
T ss_pred CCcccccchhhhcCCCcchHhhh--hhhcC-CcCeEEEEECHHHHhhhcccCcCCC----------C-------------
Confidence 321 11112223467888766 97763 3458999999887766654221111 0
Q ss_pred ccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHH
Q 006746 390 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 469 (632)
Q Consensus 390 ~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r 469 (632)
. .|.....+. .++|+.+.+. .+.++
T Consensus 325 ----------------~------------~~~~~~aaa------------------------~aal~~~~~~---~~~~~ 349 (453)
T 4ffc_A 325 ----------------G------------GNPVTCAAA------------------------VAALGVMREL---DLPAR 349 (453)
T ss_dssp ----------------S------------SCHHHHHHH------------------------HHHHHHHHHT---THHHH
T ss_pred ----------------C------------cCHHHHHHH------------------------HHHHHHhhhh---hHHHH
Confidence 0 000001111 1566665442 34555
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC-C--ccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 470 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR-E--KIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 470 ~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G-~--~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
++.+.+++++.|.++.. ..|.+... ...|.++.+.+.+... + ......+.+.+.++||.++.+.
T Consensus 350 ~~~~~~~l~~~l~~~~~----~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---- 416 (453)
T 4ffc_A 350 ARAIEASVTSRLSALAE----EVDIIGEV-----RGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG---- 416 (453)
T ss_dssp HHHHHHHHHHHHHHHHH----HCSSEEEE-----EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC----
T ss_pred HHHHHHHHHHHHHHHHh----hCCCeEEE-----EeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC----
Confidence 66666666666655410 01334322 1246778887754110 0 0123344555556788886431
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+|+++++..|.|||+++++.|++++..
T Consensus 417 ----------------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 417 ----------------------------------TFGNVIRLLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp ----------------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 01258999999999999999999999998864
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-14 Score=150.47 Aligned_cols=210 Identities=14% Similarity=0.155 Sum_probs=134.3
Q ss_pred CCceEeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~g------l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||..+.- .-++.+++++.+.+... . . |+. ..+...+.+++++
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~-------~---------------~~~-~~~~~~~la~~l~ 102 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG----T-------S---------------FGA-PCALENVLAEMVN 102 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----S-------C---------------CSS-CCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhC----C-------C---------------cCC-CCHHHHHHHHHHH
Confidence 467799987653 34888888876544221 0 0 000 1245568889999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHH---HHHh------cC------CEEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIR---TSEK------RG------ARVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~---~a~~------~G------~~v~ 243 (632)
++++ +++ .|+||+|+|+|+.+++.... +..+++|+ ....||......+.. -... .| ..+.
T Consensus 103 ~~~~-~~~--~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (427)
T 3fq8_A 103 DAVP-SIE--MVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTL 179 (427)
T ss_dssp HHST-TCS--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEE
T ss_pred HhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCcee
Confidence 9997 444 79999999999999884321 12345665 445666422111000 0000 01 1233
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC---CCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG---PKD 315 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~---g~~ 315 (632)
.++.+ |+++|+++|++.. .++++|++..+.+.+|...| ++ |.++|+++|+++++|.++.. |.
T Consensus 180 ~~~~~------d~~~le~~l~~~~---~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~- 249 (427)
T 3fq8_A 180 TTPYN------DLEAVKALFAENP---GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY- 249 (427)
T ss_dssp EEETT------CHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT-
T ss_pred ecCCC------CHHHHHHHHHhCC---CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc-
Confidence 33331 7899999997632 24688999889999999999 99 99999999999999999871 21
Q ss_pred CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 316 MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 316 m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
+...+.....+|++++| |.+|. ...+|+++.++++++.+.+
T Consensus 250 ~~~~~~~~~~~di~t~s--K~~~~-G~~~G~~~~~~~~~~~~~~ 290 (427)
T 3fq8_A 250 GGVQEKFGVTPDLTTLG--KIIGG-GLPVGAYGGKREIMQLVAP 290 (427)
T ss_dssp THHHHHTTCCCSEEEEC--GGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred chhhHhcCCCCChhhhh--hhhhC-CcceEEEEEcHHHHHhhcc
Confidence 01122223467887666 98872 2238999998888766654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=143.24 Aligned_cols=350 Identities=10% Similarity=0.028 Sum_probs=203.8
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||+.+. |.-++.+++++.+.+..... | .. ..-..+...+.+++++
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~-----~------------~~-------~~~~~~~~~~la~~l~ 114 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH-----T------------CF-------MVTPYEGYVAVCEQLN 114 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC-----C------------TT-------TTSCCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc-----c------------cC-------CccCCHHHHHHHHHHH
Confidence 56789998864 44578888887654432100 0 00 0001245568889999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-CCCCeEEE-eccccchhhHHHHHHH-----Hhc-----CCEEEEEecc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYPF-MSVKNLLT-VYDYESEAVEAMIRTS-----EKR-----GARVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~~-~~gd~ilt-~~d~~s~~v~~~~~~a-----~~~-----G~~v~~v~~~ 248 (632)
++++.+. ...|+||+|+|+|+..++..... ..+++|++ ...||......+ ... .+. ...+..+++.
T Consensus 115 ~~~~~~~-~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (451)
T 3oks_A 115 RLTPVRG-DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTM-ALTAKVMPYKDGFGPFAPEIYRAPLS 192 (451)
T ss_dssp HHSSCCS-SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHH-HHCCCCTTTTTTCCSCCSSEEEECCC
T ss_pred HhCCcCC-CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHH-HhcCCCcccccCCCCCCCCcEEeCCC
Confidence 9987542 13799999999999998866421 23356654 456775322221 110 001 1256666653
Q ss_pred CC--c----------cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc
Q 006746 249 WP--R----------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL 311 (632)
Q Consensus 249 ~~--~----------~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~ 311 (632)
.+ . +..+.+.+++.|.+.. ....+.+|++..+.+..|...| ++ +.++|+++|+++++|-++.
T Consensus 193 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~-~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 271 (451)
T 3oks_A 193 YPFRDAEFGKELATDGELAAKRAITVIDKQI-GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT 271 (451)
T ss_dssp CHHHHGGGCTTTTTCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccccccccccccchhhHHHHHHHHHHHHhhc-CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 10 0 0012444555555311 1135688888888888999988 89 9999999999999999876
Q ss_pred C-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCc
Q 006746 312 G-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 388 (632)
Q Consensus 312 ~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 388 (632)
. +.. +..++.....+|++++| |.+|. ...+|+++.++++++.+.+...+++ |
T Consensus 272 g~g~~g~~~~~~~~~~~pdi~t~s--K~l~~-G~~iG~v~~~~~~~~~~~~~~~~~t----------~------------ 326 (451)
T 3oks_A 272 GFARTGAMFACEHEGIDPDLIVTA--KGIAG-GLPLSAVTGRAEIMDSPHVSGLGGT----------Y------------ 326 (451)
T ss_dssp TTTTTSSSSGGGGGTCCCSEEEEC--GGGGT-TSSCEEEEEEHHHHTCSCTTSBCCS----------S------------
T ss_pred CCCccccchhhhhcCCCCCeeeeh--hhhhC-CcceEEEEECHHHHhhhcCCCcCCC----------C------------
Confidence 2 221 11222223467888555 97763 3457999999887766654221110 0
Q ss_pred cccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHH
Q 006746 389 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 468 (632)
Q Consensus 389 ~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~ 468 (632)
. .|.....+. .++|+.+.+. .+.+
T Consensus 327 -----------------~------------~~~~~~aaa------------------------~aal~~~~~~---~~~~ 350 (451)
T 3oks_A 327 -----------------G------------GNPIACAAA------------------------LATIETIESE---GLVA 350 (451)
T ss_dssp -----------------S------------SCHHHHHHH------------------------HHHHHHHHHT---THHH
T ss_pred -----------------C------------CCHHHHHHH------------------------HHHHHHHhhh---hHHH
Confidence 0 000011111 1566665542 4456
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCC---CccCHHHHHHHHHhCCcEEccCccCC
Q 006746 469 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR---EKIEPVLVQKLADRENISLSYGSLHH 545 (632)
Q Consensus 469 r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G---~~i~~~~V~kla~~~gI~lr~G~~c~ 545 (632)
+.+.+.+++++.|.++.. ..|.+... ...|.++.+.+.+... .......+.+.+.++||.++.+.
T Consensus 351 ~~~~~~~~l~~~L~~~~~----~~~~~~~~-----~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--- 418 (451)
T 3oks_A 351 RAQQIEKIMKDRLGRLQA----EDDRIGDV-----RGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG--- 418 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH----HCTTEEEE-----EEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC---
T ss_pred HHHHHHHHHHHHHHHHHh----hCCCeEEE-----EEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC---
Confidence 666666666666665410 01333321 1246788887754100 01123445555566788876430
Q ss_pred hHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 546 IWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.....+|+++++..|.+||+++++.|+++++
T Consensus 419 -----------------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 419 -----------------------------------TYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp -----------------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 0125899999999999999999999999875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-13 Score=144.89 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=114.2
Q ss_pred HHHHHHHHHHc-CCC-----CCCccE--EEeCCHHHHHHHHHh---hCCCCCCCeEEEec-cccchhhHHHHHHHHhcCC
Q 006746 173 SAMKKRIMDFL-NIS-----ENDYGM--VFTANRTSAFKLLAE---SYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 173 ~~~R~~ia~~l-~a~-----~~ey~v--vft~naT~al~lv~~---sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~ 240 (632)
.+.|+.|++++ +.. ++ .| +.|.++|+|+.++.. .+ .++||+|++.. .|++ ....++..|+
T Consensus 82 ~~lr~~ia~~~~~~~~~~~~~~--~i~~~~~~~g~ga~~~~~~~~~~~-~~~gd~Vlv~~p~y~~-----~~~~~~~~g~ 153 (409)
T 4eu1_A 82 ASFVEEAQKLCFGPTCAALRDG--RIASCQTLGGTGALRIGGDLLNRF-VANCNRIYGPDVGYPN-----HESIFAKAGM 153 (409)
T ss_dssp HHHHHHHHHHHHCSSCHHHHTT--CEEEEEESHHHHHHHHHHHHGGGT-SSSCCEEEEESSCCTH-----HHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCchhhccC--ceeeeecccchHHHHHHHHHHHHh-cCCCCEEEEeCCCcHh-----HHHHHHHcCC
Confidence 37888899876 654 34 46 459999999998643 33 47889987653 4442 2345677899
Q ss_pred EEEEEecc-CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CC
Q 006746 241 RVMSAEFS-WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PK 314 (632)
Q Consensus 241 ~v~~v~~~-~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~ 314 (632)
+++.++.+ ..+..+|+++|++.+++.. +.+.+++++..+|+||..+|.+ |+++|+++|+++++|.+... ..
T Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~ 230 (409)
T 4eu1_A 154 ELTPYSYYDPATKGLNLAGMLECLDKAP---EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFAT 230 (409)
T ss_dssp EEEEECCEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT
T ss_pred eEEEEEeecCcCCcCcHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccccccc
Confidence 99999873 2456789999999997421 2357888899999999999854 67789999999999998443 21
Q ss_pred C-----CCCC-CC-CCCCCcEEEEccccccCCCCCc--eEEE--EEeC
Q 006746 315 D-----MDSF-GL-SLVRPDFLICSFYQIFGENPSG--FGCL--FVKK 351 (632)
Q Consensus 315 ~-----m~~l-dl-s~~~~Df~~~S~hK~~G~~P~G--~G~L--~Vr~ 351 (632)
. ..++ .+ ....-.+++.|+.|.||. .| +|++ ++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~--~G~riG~~~~v~~~ 276 (409)
T 4eu1_A 231 GQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGL--YGHRCGALHISTAS 276 (409)
T ss_dssp SCHHHHTHHHHHHHTTSSCCEEEEECTTTSSC--GGGCCEEEEEECSS
T ss_pred CCcccchHHHHHHHhhCCcEEEEecCcccccC--ccCCceEEEEEeCC
Confidence 1 0000 01 112334778899999994 46 5776 4443
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=142.01 Aligned_cols=208 Identities=13% Similarity=0.101 Sum_probs=131.1
Q ss_pred CCceEeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~g------l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|||+.+.. .-++.+++++.+.+.... .| +. ..+...+.+++++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-----------~~------~~----------~~~~~~~la~~l~ 103 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGL-----------SF------GA----------PTEMEVKMAQLVT 103 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS-----------CC------SS----------CCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc-----------cc------CC----------CCHHHHHHHHHHH
Confidence 567899997653 247888888765442210 00 01 1245567889999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHHHHHhcCC-----------------E
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIRTSEKRGA-----------------R 241 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~-----------------~ 241 (632)
++++ .++ .|+||+|+|+|+.+++.... +..+++|+ ....||......+ .. ...|. .
T Consensus 104 ~~~~-~~~--~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
T 4e77_A 104 DLVP-TMD--MVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLL-VK-AGSGALTLGQPNSPGVPTDFAKH 178 (429)
T ss_dssp HHST-TCS--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC--------------------CCCTTSCGGGGTT
T ss_pred hhCC-CCC--EEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhh-hh-cCCcccccCCCCcCCCCCccCCc
Confidence 9987 333 79999999999999887431 23455655 4456665222111 00 00111 1
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEecccc---CC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACAL---GP 313 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~---~g 313 (632)
+..++. .|.++|+++|++.. ..+++|++..+.+.+|...| ++ |.++|+++|+++++|.++. .|
T Consensus 179 ~~~~~~------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g 249 (429)
T 4e77_A 179 TLTCTY------NDLASVRQAFEQYP---QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVA 249 (429)
T ss_dssp EEEECT------TCHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTB
T ss_pred eeecCC------CCHHHHHHHHHhcC---CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccC
Confidence 112211 27899999997531 24688888888888999999 89 9999999999999999987 22
Q ss_pred CCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 314 KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 314 ~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
. +...+.-...+|++++| |.+|. ...+|+++.+++.++.+.+
T Consensus 250 ~-~~~~~~~~~~pdi~t~s--K~~~~-G~~~G~~~~~~~~~~~l~~ 291 (429)
T 4e77_A 250 L-AGAQDYYHVIPDLTCLG--KIIGG-GMPVGAFGGRREVMNALAP 291 (429)
T ss_dssp T-TCHHHHTTCCCSEEEEE--GGGGT-TSCCEEEEECHHHHTTBTT
T ss_pred c-chHHHhcCCCCCeeeec--ccccC-CCCeEEEEECHHHHHHhcc
Confidence 2 11122222357876554 97773 4568999998887766654
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-13 Score=145.42 Aligned_cols=210 Identities=13% Similarity=0.141 Sum_probs=134.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|+|.++. |..++.+++++.+.+... + + ++. ..+...+.+++++
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~---------------------~-~----~~~-~~~~~~~l~~~la 106 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG---------------------W-L----YGA-PGEAEVLLAEKIL 106 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---------------------S-C----CSS-CCHHHHHHHHHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC---------------------C-C----CCC-CCHHHHHHHHHHH
Confidence 45779998654 446788888876543210 0 0 011 2355678999999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHH----HHH-----HhcCC------EEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMI----RTS-----EKRGA------RVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~----~~a-----~~~G~------~v~ 243 (632)
++++ .++ .|+||+|+|+|+.+++.... +..+++|+ ....||......+. ... ...|+ ++.
T Consensus 107 ~~~~-~~~--~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 183 (434)
T 2epj_A 107 GYVK-RGG--MIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTL 183 (434)
T ss_dssp HHHC-TTC--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEE
T ss_pred HhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceE
Confidence 9995 333 79999999999999887621 24456755 44566652221110 000 01233 344
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALGPKDMDS 318 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~g~~m~~ 318 (632)
.++. .|+++|+++|++.. .++++|++..+.+.||...| ++ |.++|+++|+++++|.+|. |.-...
T Consensus 184 ~~~~------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~ 253 (434)
T 2epj_A 184 VTPY------NDVEALERVFAEYG---DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGL 253 (434)
T ss_dssp EEET------TCHHHHHHHHHHHG---GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSST
T ss_pred ecCC------CCHHHHHHHHHhCC---CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCc
Confidence 4443 37889999997521 24688888888888999998 99 9999999999999999987 220011
Q ss_pred ---CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 319 ---FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 319 ---ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
++.....+|++ ++.|.+|. ...+|+++++++.++.+.+
T Consensus 254 ~~~~~~~~~~~di~--s~sK~l~~-G~~~G~v~~~~~~~~~l~~ 294 (434)
T 2epj_A 254 EGAQGYFNIEGDII--VLGKIIGG-GFPVGAVAGSREVMSLLTP 294 (434)
T ss_dssp THHHHHHTCCCSEE--EEEGGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred chhhHHhCCCCCee--eecchhcC-CcceeeeeecHHHHHhhcc
Confidence 11112358876 55697773 2347999999877665543
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=143.04 Aligned_cols=210 Identities=16% Similarity=0.097 Sum_probs=126.9
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
.+..|+|+++. |..++.+++++.+.+... . + ++. ..+..++..+.++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~---------------------~-~----~~~-~~~~~~~la~~l~ 107 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG---------------------V-Q----YAA-SHPLEVRWAERIV 107 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT---------------------C-S----SCS-SCHHHHHHHHHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC---------------------C-C----CCC-CCHHHHHHHHHHH
Confidence 45679999544 446788888876643210 0 0 111 2356677888888
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHHH------HHhcCCE------EEEEe
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIRT------SEKRGAR------VMSAE 246 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~~------a~~~G~~------v~~v~ 246 (632)
++++ +++ .|+||+|+|+|+.+++.... +..+++|+ ....||......+... ....|+. +..++
T Consensus 108 ~~~~-~~~--~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 184 (453)
T 2cy8_A 108 AAFP-SIR--KLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR 184 (453)
T ss_dssp HHCT-TCS--EEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEEC
T ss_pred hhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC
Confidence 8876 433 79999999999999888711 23445655 4445664211111100 0012332 33332
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccCCCCCCC---
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALGPKDMDS--- 318 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~g~~m~~--- 318 (632)
. .|+++|+++|++.. .++++|.+..+.+.||...| ++ |.++|+++|+++++|.++. +.-...
T Consensus 185 ~------~d~~~le~~l~~~~---~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~ 254 (453)
T 2cy8_A 185 P------DDIEGMREVFANHG---SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGM 254 (453)
T ss_dssp T------TCHHHHHHHHHHHG---GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHH
T ss_pred C------CCHHHHHHHHHhcC---CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhh
Confidence 2 37899999997421 23578888777777999998 99 9999999999999999987 220011
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
++.-...+|++ ++.|.+|. +..+|++++++++++.+.+
T Consensus 255 ~~~~~~~~di~--s~sK~l~~-G~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 255 QALLDVQPDLT--CLAKASAG-GLPGGILGGREDVMGVLSR 292 (453)
T ss_dssp HHHHTCCCSEE--EEEGGGGT-TSSCEEEEECHHHHTTSSS
T ss_pred hHHhCCCCcEE--EEChhhhC-CcceEEEechHHHHHHhcc
Confidence 11112357876 55598773 3468999999887766644
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-13 Score=144.28 Aligned_cols=207 Identities=13% Similarity=0.124 Sum_probs=133.0
Q ss_pred CCceEeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~g------l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++.-|||+++.. .-++.+++++.+.+.... . ++. ......+.+++++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-----------~---------------~~~-~~~~~~~l~~~la 103 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGT-----------S---------------FGA-PTEIENKLAKLVI 103 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCS-----------C---------------CSS-CCHHHHHHHHHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCc-----------C---------------cCC-CCHHHHHHHHHHH
Confidence 567899998753 358888888765432110 0 000 1234457888999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHHHHHhcCC------------------
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIRTSEKRGA------------------ 240 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~------------------ 240 (632)
++++ .++ .|+||+|+|+|+..++.... ...+++|++ ...||......+ ...|.
T Consensus 104 ~~~~-~~~--~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~ 176 (429)
T 3k28_A 104 ERVP-SIE--IVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLL----IKAGSGVATLGLPDSPGVPEGVA 176 (429)
T ss_dssp HHST-TCS--EEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGC----SSCCTTC-----CCCTTCCHHHH
T ss_pred HhCC-CCC--EEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHH----HhcCCcccccCCCCcCCCCCccc
Confidence 9987 333 79999999999999887652 124556654 455664222111 01111
Q ss_pred -EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-C
Q 006746 241 -RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-P 313 (632)
Q Consensus 241 -~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g 313 (632)
.+..++.+ |.++|+++|.+.. .++.+|++..+.+.+|...| ++ +.++|+++|+++++|.++.. .
T Consensus 177 ~~~~~~~~~------d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~ 247 (429)
T 3k28_A 177 KNTITVAYN------DLESVKYAFEQFG---DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFR 247 (429)
T ss_dssp TTEEEEETT------CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred CceeecCCC------CHHHHHHHHHhCC---CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 22233321 7889999887421 24678888888889999999 99 99999999999999999852 1
Q ss_pred C-CCCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 314 K-DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 314 ~-~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
. .+...+.-...+|++++| |.+|. +..+|++++++++++.+.+
T Consensus 248 ~g~~~~~~~~~~~~di~t~s--K~~~~-G~~iG~~~~~~~~~~~~~~ 291 (429)
T 3k28_A 248 VAYNCGQGYYGVTPDLTCLG--KVIGG-GLPVGAYGGKAEIMRQVAP 291 (429)
T ss_dssp SSTTHHHHHHTCCCSEEEEC--GGGGT-TSCCEEEEECHHHHTTBTT
T ss_pred cCcchHHHHhCCCCceehhh--hhhcC-CCCeEEEEEcHHHHhhhcc
Confidence 1 001111122357887655 97774 5578999999887766643
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-12 Score=139.92 Aligned_cols=175 Identities=9% Similarity=-0.053 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-C--CCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-P--FMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-~--~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
..+.+++-..+.+++|.+.. ...++++++|.+.++++-+. . ..+++.|+++-.-|..... .+.-.|+..+++
T Consensus 97 ~~~e~~~~~~~~~~lGlp~~-~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~k----Al~l~Gl~p~~v 171 (450)
T 3bc8_A 97 NKITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK----SMVTAGFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH----HHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCC-ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHH----HHHHcCCeeEEE
Confidence 35667888888999999753 46789999986655544332 1 1126777765544432333 345579999988
Q ss_pred ecc--CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC-CCCCCC
Q 006746 246 EFS--WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-MDSFGL 321 (632)
Q Consensus 246 ~~~--~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~-m~~ldl 321 (632)
+.. .+.+.+|+++|+++|.+.. ...+.+|+.+.-.+.+|..-|++ |+++||++|++++||+|+.+-.. ..++--
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~--~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~ 249 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ 249 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH
T ss_pred EeeecCccCCcCHHHHHHHHHhcC--CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHH
Confidence 662 2467899999999998642 12344444444444456889999 99999999999999998765220 001100
Q ss_pred CC---CCCcEEEEccccccCCCCCceEEEEEeC
Q 006746 322 SL---VRPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 322 s~---~~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
+. -++|+++.|.||+++. |.|.++|++|+
T Consensus 250 ~a~~~~~AD~~v~S~HK~l~a-~~~~~~l~~rd 281 (450)
T 3bc8_A 250 QGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFN 281 (450)
T ss_dssp HHHHHSCCCEEEEEHHHHHSC-CSSCEEEEESC
T ss_pred HHhcccCCCEEEECCccCCCc-hhccEEEEecC
Confidence 11 2689999999998887 99999999974
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-12 Score=137.25 Aligned_cols=209 Identities=15% Similarity=0.164 Sum_probs=131.7
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
++..|+|.++. |+.++.+++++.+.+... . + ++. ..+...+.+++++
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---------------------~-~----~~~-~~~~~~~l~~~l~ 102 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG---------------------L-T----FGA-PSPLEVALAKKVK 102 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---------------------S-C----CSS-CCHHHHHHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC---------------------C-C----CCC-CCHHHHHHHHHHH
Confidence 45779998753 456788888876543210 0 0 111 2355678899999
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEE-EeccccchhhHHHHHH-H--------HhcCC------EEE
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESY-PFMSVKNLL-TVYDYESEAVEAMIRT-S--------EKRGA------RVM 243 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl-~~~~gd~il-t~~d~~s~~v~~~~~~-a--------~~~G~------~v~ 243 (632)
++++ .++ .|+||+|+|+|+.+++... .+..+++|+ ....||......+... . ...|+ .+.
T Consensus 103 ~~~~-~~~--~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 179 (424)
T 2e7u_A 103 RAYP-FVD--LVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTL 179 (424)
T ss_dssp HHCT-TCC--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEE
T ss_pred HhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceE
Confidence 9986 443 7999999999999888751 123456655 4445664211111000 0 01232 344
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALGPKDMDS 318 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~g~~m~~ 318 (632)
.++. .|.++|+++|++.. .++++|.+..+.+.||...| ++ +.++ +++|+++++|.++. |.-...
T Consensus 180 ~~~~------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~ 248 (424)
T 2e7u_A 180 VLEY------NDPEGLREVLKRRG---EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAF 248 (424)
T ss_dssp EECT------TCHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSST
T ss_pred eCCC------CCHHHHHHHHHhCC---CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccch
Confidence 4432 37889999887421 23578888777777999998 99 9999 99999999999987 220011
Q ss_pred ---CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 319 ---FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 319 ---ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
++.-...+|++ ++.|.+|. ...+|+++++++.++.+.+
T Consensus 249 ~~~~~~~~~~~di~--s~sK~l~~-G~~~G~~~~~~~~~~~~~~ 289 (424)
T 2e7u_A 249 GGATELLGLKPDLV--TLGKILGG-GLPAAAYAGRREIMEKVAP 289 (424)
T ss_dssp THHHHHHTCCCSEE--EECGGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred hHHHHHhCCCcchh--hhhhhhhC-CcceEEEEEcHHHHhhhcc
Confidence 11112357876 66798873 3458999999887766654
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.3e-12 Score=140.39 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=110.1
Q ss_pred ccEEEeCCHHHHHHHHHhhC----CCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCc-cccCHHHHHHHH
Q 006746 190 YGMVFTANRTSAFKLLAESY----PFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPR-LRINSEKLRKMV 263 (632)
Q Consensus 190 y~vvft~naT~al~lv~~sl----~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~-~~i~~~~l~~~i 263 (632)
.+|++|+|+++|+.+++..+ -..+||+|++. ..|+. ...... ....|++++.++.+..+ ..+|.++|++.+
T Consensus 166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~--~~~~~~-~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 242 (546)
T 2zy4_A 166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTP--YIEIPE-LAQYALEEVAINADPSLNWQYPDSELDKLK 242 (546)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHH--HHHHHH-STTSCCEEEEEECBGGGTTBCCHHHHGGGG
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCcc--HHHHHH-HcCCCcEEEEEecCcccCCCCCHHHHHHhh
Confidence 37999999999999999873 25789997654 45553 222111 23457999999886322 358899887765
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH----HHHHH--hhCCcEEEEeccccCCCCCCCCCCCC--CCCcEEEEcccc
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIA--QENDWHILIDACALGPKDMDSFGLSL--VRPDFLICSFYQ 335 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a--~~~g~~vlvDaaq~~g~~m~~ldls~--~~~Df~~~S~hK 335 (632)
.. +++++.++..+|+||..+|.+ |+++| +++|+++++|.++..... ....+.. .+.++++.|+.|
T Consensus 243 ~~------~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~-~~~s~~~~~~~~~i~~~S~SK 315 (546)
T 2zy4_A 243 DP------AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD-DFQSLFAICPENTLLVYSFSK 315 (546)
T ss_dssp ST------TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGST-TCCCHHHHCGGGEEEEEESTT
T ss_pred CC------CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcc-cCcCHHHhCCCCEEEEEeCcc
Confidence 43 368999999999999999855 56777 788999999998763211 1111111 135799999999
Q ss_pred ccCCCCCc--eEEEEEeCC-Ccccc
Q 006746 336 IFGENPSG--FGCLFVKKS-TVPIL 357 (632)
Q Consensus 336 ~~G~~P~G--~G~L~Vr~~-~~~~L 357 (632)
.+|. +| +|++++.++ +++.+
T Consensus 316 ~~g~--~GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 316 YFGA--TGWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp TTTC--GGGCEEEEEEESSCHHHHH
T ss_pred ccCC--CCcceEEEEECCHHHHHHH
Confidence 9994 47 699999886 55444
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-10 Score=124.42 Aligned_cols=357 Identities=13% Similarity=0.118 Sum_probs=209.6
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch--hHHHHHHHHHHHHHcCCCCCCccE
Q 006746 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~--~~~~~~~R~~ia~~l~a~~~ey~v 192 (632)
++-...|+.|++++-..+... |--+-|..++ ||+-+ .++..-++++++++||++..+|.|
T Consensus 61 ASEN~~S~aV~~a~gS~ltnK-----------------YaEGyPg~Ry-YgGce~vD~iE~la~~rak~lF~a~~A~w~V 122 (490)
T 3ou5_A 61 ASENFCSRAALEALGSCLNNK-----------------YSEGYPGKRY-YGGAEVVDEIELLCQRRALEAFDLDPAQWGV 122 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTC-----------------CCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred cCCCcCCHHHHHHhcCccccc-----------------ccCCCCCccc-cCCChHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 666789999999977655431 1113344443 55443 567778899999999998765432
Q ss_pred -EEeCCHHHHHHHHHhhCCCCCCCeEEEe-c---cccchhhHHHHHH----HHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 193 -VFTANRTSAFKLLAESYPFMSVKNLLTV-Y---DYESEAVEAMIRT----SEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 193 -vft~naT~al~lv~~sl~~~~gd~ilt~-~---d~~s~~v~~~~~~----a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
|=.-|++.|.-.+..++ .+|||+|+.. . .|-+. -.+... ...+-.++...+++..++.||.+++++..
T Consensus 123 NVQP~SGs~AN~avy~Al-l~PGD~ilg~~l~~GGHltH--g~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A 199 (490)
T 3ou5_A 123 NVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTH--GYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTA 199 (490)
T ss_dssp ECCCSSHHHHHHHHHHHH-CC-CCCEECBC------------------------------CBCEETTTTEECHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHH-cCCCCEEEecccCCCCcccc--cccCCCcccccccccccccccccCCCCCcccHHHHHHHH
Confidence 23348889999999998 7999998732 2 33221 110000 01111234444566678899999999988
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC-----CCCCCCCCCCCCCcEEEEcccc-c
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP-----KDMDSFGLSLVRPDFLICSFYQ-I 336 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g-----~~m~~ldls~~~~Df~~~S~hK-~ 336 (632)
...+ ++|+++-... .-..+|++ +.++|.+.|+++++|+||.+| .-..|++ .+|++.++.|| +
T Consensus 200 ~~~k-----PklIi~G~Sa--Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADvVTtTTHKTL 268 (490)
T 3ou5_A 200 RLFR-----PRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTL 268 (490)
T ss_dssp HHHC-----CSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSSTT
T ss_pred hhcC-----CCeEEECCcc--CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceEEeccccccc
Confidence 7653 6887776653 34568999 999999999999999998774 2123554 37999999999 5
Q ss_pred cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhc
Q 006746 337 FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQS 416 (632)
Q Consensus 337 ~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~ 416 (632)
.| |. -|+++.+++... ..+.. | -- ..+ +++ ..+. . .-|.+ ..
T Consensus 269 rG--Pr-GG~Il~~~~~~~-~~~k~-~-~~-------~~~--------~~~-----kkin----~-aVFPg-------~q 310 (490)
T 3ou5_A 269 RG--AR-SGLIFYRKGVKA-VDPKT-G-RE-------IPY--------TFE-----DRIN----F-AVFPS-------LQ 310 (490)
T ss_dssp CS--CS-CEEEEEECSEEE-ECC---C-CE-------EEC--------CCH-----HHHH----H-HHTTT-------TC
T ss_pred cC--CC-ceEEEecccccc-ccccc-c-ch-------hHH--------HHH-----HHHH----h-hcCcc-------cc
Confidence 56 86 477777775421 11110 1 00 000 000 0000 0 01111 13
Q ss_pred CCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEE
Q 006746 417 GKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVK 496 (632)
Q Consensus 417 Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~ 496 (632)
|.|+...|.++. .+|.....-....-.+++..-++.|-+.|.+. |.+
T Consensus 311 ggp~~h~IAAkA------------------------Vaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~------G~~--- 357 (490)
T 3ou5_A 311 GGPHNHAIAAVA------------------------VALKQACTPMFREYSLQVLKNARAMADALLER------GYS--- 357 (490)
T ss_dssp SSCCHHHHHHHH------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------TCE---
T ss_pred ccchHHHHHHHH------------------------HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC------CCe---
Confidence 556666677665 55554433334556667777777888888876 644
Q ss_pred EECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccc
Q 006746 497 IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRK 576 (632)
Q Consensus 497 Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 576 (632)
|.+.. -....+-+.+.+. | +....+++++++.||.+--- . .+.+
T Consensus 358 vvsGg---TdnHlvLvDl~~~-g--~tG~~ae~~Le~agItvNkN---~-------------------------iP~D-- 401 (490)
T 3ou5_A 358 LVSGG---TDNHLVLVDLRPK-G--LDGARAERVLELVSITANKN---T-------------------------CPGD-- 401 (490)
T ss_dssp EGGGS---CSSSEEEEECGGG-T--CCHHHHHHHHHHTTEECEEE---C-------------------------CTTC--
T ss_pred eecCC---CCceEEEEecccc-C--CCHHHHHHHHHHcCcEECCC---C-------------------------CCCC--
Confidence 43321 1245666666542 2 78889999999999986310 0 0110
Q ss_pred ccCCCCCcEEEEccCCCC----CHHHHHHHHHHHHHhhh
Q 006746 577 DKANLGITVVTASLGYLA----NFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 577 ~~~~~~~~~VRvSlg~~~----t~eDV~rlv~~l~~~l~ 611 (632)
+...-.+.||+...-+| .++|+..+.++|.+.|+
T Consensus 402 -~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 402 -RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp -CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 12233568999976655 67999999999988775
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6e-12 Score=138.74 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHHHHHhcCC--EEEEE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIRTSEKRGA--RVMSA 245 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~--~v~~v 245 (632)
+...+..++|+++++ ..+ .++|++++|+|+..++.... +..+++|+. ...||......+.. ....|+ .+..+
T Consensus 140 ~~~~~Lae~L~~~~p-~~~--~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg-~~~~g~~~~~~~~ 215 (465)
T 2yky_A 140 ENEALFAEAVCDRFP-SID--LVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASG-HAPTNAPYHVVLG 215 (465)
Confidence 445578888999985 222 58999999999999887653 334466664 45676533322200 112344 22223
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccCCCC--CCC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALGPKD--MDS 318 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~g~~--m~~ 318 (632)
+. -|+++|+++|++. ..++++|++..+.+.+|...| ++ +.++|+++|+++++|.++. ... +..
T Consensus 216 ~~------~d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a 285 (465)
T 2yky_A 216 VY------NDVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGA 285 (465)
Confidence 22 2677888888732 124577777776666999888 88 9999999999999999987 321 111
Q ss_pred CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 319 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 319 ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
.+.....||++ ++-|.+|. ...+|+++.++++++.+.+
T Consensus 286 ~~~~gv~pDi~--t~sK~lg~-G~piG~v~~~~~i~~~l~~ 323 (465)
T 2yky_A 286 QEMLGISADLT--TLGKYIGG-GMSFGAFGGRRDLMERFDP 323 (465)
Confidence 22222357876 45698883 2237899999988877655
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-09 Score=113.64 Aligned_cols=255 Identities=14% Similarity=0.056 Sum_probs=154.4
Q ss_pred CCChhHHHHHHHHHHh--CCCCCC-chhHHHHHHhhccCcCCCCceEeecCCCC-----CCCHHHHHHHhcCCCCCCCCC
Q 006746 68 ESLPSLQQSLTEFTKA--YPQYFD-TYQIDQIRAKEYYQLSLSNHTCLDYFGIG-----LFSYNQLHKQESSPSHLRPSL 139 (632)
Q Consensus 68 ~~lp~l~~a~~~F~~~--~p~y~~-~~~~d~iR~~ef~~L~~~~~vyLD~ag~g-----l~~~~~~~a~~~~~~~~~~~~ 139 (632)
+.+-.-++-....+.. .|+-+- ...++.+-. +...+| .+. |++++|.| .++.-|.+.|..+..-+-
T Consensus 23 ~~~~~~~~~~~~ll~~r~~P~~g~~d~~ie~~l~-~la~md-snn-~~~~~g~GERE~Rv~s~lv~rrh~~~~HGiG--- 96 (501)
T 3hl2_A 23 EARRSHEHLIRLLLEKGKCPENGWDESTLELFLH-ELAIMD-SNN-FLGNCGVGEREGRVASALVARRHYRFIHGIG--- 96 (501)
T ss_dssp CCTHHHHHHHHHHHHHCCCCSSCCCHHHHHHHHH-HHHTTB-GGG-CSSCCCCSSCCCCCSCHHHHHHTTTCCSCBS---
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHH-HHHhhc-cCC-CcccCCcccchHHHHHHHHHhhccCcccCCC---
Confidence 4444545555555553 576553 356666664 577775 334 89999988 788888887655432111
Q ss_pred CCCCCCCccccccccccccccccc--cccc-hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-C-CCC-
Q 006746 140 PSQNLDIPFFSVSYKTGNLKTQLL--HGGQ-ESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-P-FMS- 213 (632)
Q Consensus 140 P~~~~~~p~f~~~~~~~n~~s~~~--~g~~-~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-~-~~~- 213 (632)
.++|+...-+ -|.. ...+-+..-..+.+.+|.+.. -..++++++|.+...++-+. . -++
T Consensus 97 --------------RSGd~~~~QPKAaGssll~~ltn~l~ld~L~~~G~~~~-~~~flVnGsTgg~lamilaa~r~~rpg 161 (501)
T 3hl2_A 97 --------------RSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTV-ANCFVVPMATGMSLTLCFLTLRHKRPK 161 (501)
T ss_dssp --------------CSSCTTCCCTTBHHHHHHHHHHHHHHHHHHHHTTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTT
T ss_pred --------------CccccccCCCCccchHHHHHHHHHHHHHHHHHcCCCCC-CcEEEECcHHHHHHHHHHHHcCcccCC
Confidence 1233221110 0111 123333444444556698853 26888999996666554443 1 112
Q ss_pred CCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc--CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCC-Ccccc
Q 006746 214 VKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS--WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRM-TGARY 289 (632)
Q Consensus 214 gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~--~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~-TG~~~ 289 (632)
+++|+.+- .|.| .+..+ .-.|+++++++.. .+...+|+++++++|++.. ... .+++++..++. .|..-
T Consensus 162 ~d~VIvpRn~HKS-v~kAl----iL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~g--a~~-i~~V~~Ttt~y~p~~~d 233 (501)
T 3hl2_A 162 AKYIIWPRIDQKS-CFKSM----ITAGFEPVVIENVLEGDELRTDLKAVEAKVQELG--PDC-ILCIHSTTSCFAPRVPD 233 (501)
T ss_dssp CCEEEEECCCCHH-HHHHH----HHTTCEEEEECEEEETTEEEECHHHHHHHHHHHC--GGG-EEEEEEECSCCTTBCCC
T ss_pred CCEEEEecchHHH-HHHHH----HHcCCeEEEEeeeecccccCCCHHHHHHHHHhcC--CCc-EEEEEecCCCCCCcccc
Confidence 48877664 5655 55543 3469999999763 3457789999999998742 112 34444444433 44668
Q ss_pred chH-HHHHHhhCCcEEEEeccccCCCCC-CCCCCC--CCC-CcEEEEccccccCCCCCceEEEEEeCC
Q 006746 290 PYL-WMRIAQENDWHILIDACALGPKDM-DSFGLS--LVR-PDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 290 pl~-i~~~a~~~g~~vlvDaaq~~g~~m-~~ldls--~~~-~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
|++ |+++||++|++++||.|+.+-... ..+--+ ..+ +|+++.|.||++-. |.|-|+++++++
T Consensus 234 dI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llv-pIGG~ii~~~d~ 300 (501)
T 3hl2_A 234 RLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFND 300 (501)
T ss_dssp CHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCC-CSSCEEEEESCH
T ss_pred cHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEeccccccee-ecCceEEEeCCH
Confidence 999 999999999999999876652100 000000 124 89999999996655 888777777754
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.5e-09 Score=115.32 Aligned_cols=170 Identities=12% Similarity=0.134 Sum_probs=107.3
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHHH-HHhcCCEEEEEeccC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIRT-SEKRGARVMSAEFSW 249 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~~-a~~~G~~v~~v~~~~ 249 (632)
.+..++|++.+.- ...|.|++++|+|...+++... +...++|+ ....||......+... .......+..+|.
T Consensus 130 ~~lae~l~~~~p~---~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-- 204 (454)
T 4ao9_A 130 GRLARLICERFPQ---IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-- 204 (454)
T ss_dssp HHHHHHHHHHSTT---CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT--
T ss_pred HHHHHHHHHhCCC---CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC--
Confidence 3566778888753 2279999999999887665432 22334565 4446665322111000 0011123333332
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccCCCCCCCCCC---
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALGPKDMDSFGL--- 321 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl--- 321 (632)
-|.+.+++.|.+.. ..+..|++--+....|.+.| ++ +.++|+++|+++|+|-+|.+ . ......
T Consensus 205 ----nd~~~l~~~l~~~~---~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R-~G~~~a~e~ 275 (454)
T 4ao9_A 205 ----NDAQTARAQIERHG---PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-R-LAPHGLANK 275 (454)
T ss_dssp ----TCHHHHHHHHHHTG---GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-G-GSTTCHHHH
T ss_pred ----chHHHHHHHHhhcC---CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-C-Cccccchhc
Confidence 36788998887642 34677888878888999988 78 88999999999999998874 2 011111
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
-...||+++++ |.+|. ...+|++..++++++.+.+
T Consensus 276 ~gv~PDi~t~g--K~lgg-G~Piga~~~~~ei~~~~~~ 310 (454)
T 4ao9_A 276 LGIRSDLTTLG--KYIGG-GMSFGAFGGRADVMALFDP 310 (454)
T ss_dssp HTCCCSEEEEE--GGGGT-TSSCEEEEECHHHHGGGCT
T ss_pred cCCCCcEEEec--cccCC-CCcceeeeeHHHHHHHHhh
Confidence 12368998765 74432 2248999999998876654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-08 Score=108.52 Aligned_cols=312 Identities=14% Similarity=0.137 Sum_probs=175.8
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EeccccchhhHHHHHHHH----hc-----CCE
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLL-TVYDYESEAVEAMIRTSE----KR-----GAR 241 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~il-t~~d~~s~~v~~~~~~a~----~~-----G~~ 241 (632)
.+.-+++.+++..+.- ..+.|++++|+|...+++--. +....+|+ ....||......+.-... +. ...
T Consensus 110 ~~lae~L~~~~p~~~~-~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~ 188 (456)
T 4atq_A 110 VAVTEQLNRLTPGDHA-KRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPE 188 (456)
T ss_dssp HHHHHHHHHHSSCSSC-EEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSS
T ss_pred HHHHHHHHHhCCCCCC-cEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCcccc
Confidence 3566777888754322 268999999999987665422 12234465 445788643322211100 01 124
Q ss_pred EEEEeccCCc----cc-cCHHHHHHHHH---hcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEec
Q 006746 242 VMSAEFSWPR----LR-INSEKLRKMVV---SKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDA 308 (632)
Q Consensus 242 v~~v~~~~~~----~~-i~~~~l~~~i~---~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDa 308 (632)
+..+|...+. .. .+.+.+++.++ ... ....+..|++--+....|...| ++ +.++|+++|+++|+|-
T Consensus 189 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DE 267 (456)
T 4atq_A 189 VYRMPMSYPFREENPEITGAEAAKRAITMIEKQI-GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADE 267 (456)
T ss_dssp EEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred ceecccccccccCCCcccHHHHHHHHHHHHHHhh-cCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecc
Confidence 5566653211 11 12333333332 211 1235677777777777898876 55 7789999999999999
Q ss_pred cccC-CCC--CCCCCCCCCCCcEEEEcccc-ccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCC
Q 006746 309 CALG-PKD--MDSFGLSLVRPDFLICSFYQ-IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC 384 (632)
Q Consensus 309 aq~~-g~~--m~~ldls~~~~Df~~~S~hK-~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~ 384 (632)
+|.+ |.. +--.+.-...||+++++ | +-|. .-+|++.++++.++.+.+...|++ |
T Consensus 268 V~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg--~P~~av~~~~~i~~~~~~~~~~~T----------f-------- 325 (456)
T 4atq_A 268 VQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGG--LPLSAITGRADLLDAVHPGGLGGT----------Y-------- 325 (456)
T ss_dssp TTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTT--SSCEEEEEEHHHHTTSCTTSSCCS----------S--------
T ss_pred cccccCCccccccccccCCCCchhhhh--hcccCc--CCceeeEecHHHHhcccccCCCCC----------C--------
Confidence 9886 321 11111122369999887 7 4332 237899999988776655322211 1
Q ss_pred CCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHH
Q 006746 385 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 464 (632)
Q Consensus 385 ~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~ 464 (632)
.| .+++. ..++ +.|+.+.+.+
T Consensus 326 ---------------~g-----npla~------------aaal-------------------------a~L~~i~~~~-- 346 (456)
T 4atq_A 326 ---------------GG-----NPVAC------------AAAL-------------------------AAIDTMEQHD-- 346 (456)
T ss_dssp ---------------SS-----CHHHH------------HHHH-------------------------HHHHHHHHTT--
T ss_pred ---------------CC-----ChHHH------------HhhH-------------------------HHHHHHhhcc--
Confidence 00 01110 1111 5677776644
Q ss_pred HHHHHHHHHHHHHHHHHHccC--CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHH---HHHHHHHhCCcEEc
Q 006746 465 MISRRGRCLINWLVNALMKLQ--HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV---LVQKLADRENISLS 539 (632)
Q Consensus 465 ~I~~r~~~L~~~L~~~L~~l~--h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~---~V~kla~~~gI~lr 539 (632)
+.+|++.+.++|.+.|.+|. ++.. +.|.| +. + .-+|-++++.+.+.....-+.+ .+.+.+-++|+.++
T Consensus 347 -l~~~~~~~g~~l~~~L~~l~~~~~~~-~~~~v---~~-V-RG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~ 419 (456)
T 4atq_A 347 -LNGRARHIEELALGKLRELAAELSAG-GGSVV---GD-I-RGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIIL 419 (456)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHCC------CE---EE-E-EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECE
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcccc-cCCce---EE-e-eecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEE
Confidence 56777778888888777662 1110 01222 11 0 1246788887765322111222 23344445777764
Q ss_pred cCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 540 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 540 ~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.. + ....+||+++.+..|.+||+.+++.|.+-|++
T Consensus 420 ~~-------------------------g-------------~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 420 TC-------------------------G-------------TYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp EE-------------------------C-------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ec-------------------------C-------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 0 12248999999999999999999999988765
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-08 Score=106.67 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=109.9
Q ss_pred HHHHHHHHHc-CC-----CCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFL-NI-----SENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l-~a-----~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.|++++ +. ++++.+|+.|.++++|+.+++..+- +.+ |+|++.. .|+. ....++..|++++.+
T Consensus 76 ~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~-----~~~~~~~~g~~~~~v 149 (405)
T 3k7y_A 76 DFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYIN-----HVNMIESRGFNLKYI 149 (405)
T ss_dssp HHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHH-----HHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHh-----HHHHHHHcCCeEEEE
Confidence 5777777765 21 2233357999999999999998762 337 8877543 4432 234567789999999
Q ss_pred ec-cCCccccCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccchH-H---HHHHhhCCcEEEEecccc-CCCC-CC
Q 006746 246 EF-SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYPYL-W---MRIAQENDWHILIDACAL-GPKD-MD 317 (632)
Q Consensus 246 ~~-~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq~-~g~~-m~ 317 (632)
|. +..+..+|.++|++.+.+.. +++++.+.. .+|+||..++.+ | +++|++++++++.|-+-. ...+ ..
T Consensus 150 ~~~~~~~~~~d~~~l~~~l~~~~----~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~ 225 (405)
T 3k7y_A 150 NFFDYNLIDINYDLFLNDLRNIP----NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLE 225 (405)
T ss_dssp CCEETTTTEECHHHHHHHHHHSC----SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTT
T ss_pred eccccccCCcCHHHHHHHHHhCC----CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcc
Confidence 88 32346789999999997521 236666644 479999999876 4 567889999999997632 1110 00
Q ss_pred ----CC-CC-CCCCCcEEEEccccccCCCCCceEEEEE
Q 006746 318 ----SF-GL-SLVRPDFLICSFYQIFGENPSGFGCLFV 349 (632)
Q Consensus 318 ----~l-dl-s~~~~Df~~~S~hK~~G~~P~G~G~L~V 349 (632)
++ .+ +...-=+++.|+-|.||.+--.+|++++
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~ 263 (405)
T 3k7y_A 226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHI 263 (405)
T ss_dssp GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEE
Confidence 00 00 1112237788999999864345688764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.9e-07 Score=98.50 Aligned_cols=313 Identities=13% Similarity=0.106 Sum_probs=176.9
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC------CCCCC-eEEE-eccccchhhHHHHHHH----HhcC-
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP------FMSVK-NLLT-VYDYESEAVEAMIRTS----EKRG- 239 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~------~~~gd-~ilt-~~d~~s~~v~~~~~~a----~~~G- 239 (632)
.+.-++|.+++..+-+ .|.|++|+|+|...+++-.. -++++ +|+. ...||......|.-.- +..+
T Consensus 114 ~~lAe~L~~~~p~~~~--~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~ 191 (473)
T 4e3q_A 114 VMLSEKLVEVSPFDSG--RVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGL 191 (473)
T ss_dssp HHHHHHHHHHSSCSSC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTC
T ss_pred HHHHHHHHhhCCCCcc--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCC
Confidence 3566778888765433 69999999999887765421 12333 3554 4578864433321100 0111
Q ss_pred --CEEEEEeccC-----Ccccc-------CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhC
Q 006746 240 --ARVMSAEFSW-----PRLRI-------NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQEN 300 (632)
Q Consensus 240 --~~v~~v~~~~-----~~~~i-------~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~ 300 (632)
..+..++... ..+.. ..+++++.|.... ...+..|++.-+....|.+.| ++ +.++|+++
T Consensus 192 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~ 269 (473)
T 4e3q_A 192 PLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREG--ADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY 269 (473)
T ss_dssp SCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred CCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhC--CCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc
Confidence 1233333210 01111 1234555555321 235788888888888899876 44 66889999
Q ss_pred CcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccc
Q 006746 301 DWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWL 377 (632)
Q Consensus 301 g~~vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~ 377 (632)
|+++|+|-+|.+ |.. +--...-...||+++++ |.+|..-.-+|++.+++++++.+.+.... ...+.
T Consensus 270 gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~~~~~~~~~--------~~~~~- 338 (473)
T 4e3q_A 270 DIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFPMGAVILGPELSKRLETAIEA--------IEEFP- 338 (473)
T ss_dssp TCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHHHH--------HSCCC-
T ss_pred ceEEeccCccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCCcccccccHHHHHHhcccccc--------ccccc-
Confidence 999999998875 321 11111122469998776 84431011279999999887655321000 00000
Q ss_pred ccccCCCCCCccccchhhhhhhccccCCCc-cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHH
Q 006746 378 TDEFSSCETEPEQTSKSKQEKVAATNTFSG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD 456 (632)
Q Consensus 378 ~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~-~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd 456 (632)
..+| |.+ +++. ..++ +.|+
T Consensus 339 ---------------------hg~T--~~Gnpla~------------Aaal-------------------------a~L~ 358 (473)
T 4e3q_A 339 ---------------------HGFT--ASGHPVGC------------AIAL-------------------------KAID 358 (473)
T ss_dssp ---------------------CCCT--TTTCHHHH------------HHHH-------------------------HHHH
T ss_pred ---------------------cCCC--CCCCcchh------------hhhh-------------------------hhhh
Confidence 0111 111 1110 1111 5666
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC--ccC-----HHHHHH
Q 006746 457 QVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE--KIE-----PVLVQK 529 (632)
Q Consensus 457 ~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~--~i~-----~~~V~k 529 (632)
.+++. .+.+|++.+..+|.++|.+|.. .|.|. . . .-+|-++++.+...+.. ..+ ...+.+
T Consensus 359 ~i~~~---~l~~~~~~~g~~l~~~L~~l~~-----~~~v~---~-v-RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~ 425 (473)
T 4e3q_A 359 VVMNE---GLAENVRRLAPRFEERLKHIAE-----RPNIG---E-Y-RGIGFMWALEAVKDKASKTPFDGNLSVSERIAN 425 (473)
T ss_dssp HHHHS---SHHHHHHHHHHHHHHHHHHHTT-----STTEE---E-E-EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHH
T ss_pred hhccc---cHHHHHHHHHHHHHHHHHHHhc-----CCCee---E-E-eecceEEEEEEecCccccccccccHHHHHHHHH
Confidence 66654 4567888888999999988742 24331 1 0 12466777776432221 111 234555
Q ss_pred HHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 530 LADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 530 la~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
.+-++|+.++.. + .+||+++.+..|.+||+.+++.+.+.
T Consensus 426 ~~~~~Gll~~~~----------------------------------------g-~~i~l~PPL~it~~eid~~~~~l~~a 464 (473)
T 4e3q_A 426 TCTDLGLICRPL----------------------------------------G-QSVVLCPPFILTEAQMDEMFDKLEKA 464 (473)
T ss_dssp HHHHTTEECEEE----------------------------------------T-TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCcEEEec----------------------------------------C-CEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 555677766421 1 38999999999999999999999998
Q ss_pred hhhcc
Q 006746 610 LDADF 614 (632)
Q Consensus 610 l~~~f 614 (632)
|++-+
T Consensus 465 l~~v~ 469 (473)
T 4e3q_A 465 LDKVF 469 (473)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-06 Score=93.71 Aligned_cols=227 Identities=12% Similarity=0.056 Sum_probs=133.0
Q ss_pred HHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHH
Q 006746 95 QIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA 174 (632)
Q Consensus 95 ~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~ 174 (632)
+.+++.-|..++.=-+|.|--|-.+..++|.++.....+... ...|- | . .|. .+
T Consensus 38 ~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~---~~~Y~--p-----------~----~G~------p~ 91 (420)
T 4h51_A 38 RAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNL---DYEYL--P-----------I----SGY------QP 91 (420)
T ss_dssp HHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTC---CCCCC--C-----------T----TCC------HH
T ss_pred HHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCC---CCCCC--C-----------c----CCh------HH
Confidence 334433333333345799988888888998887543221100 00010 0 0 021 25
Q ss_pred HHHHHHHHc-C--CCCCCccEEEeCCHHHHHHHHHhhCC---CCCCCeEEEe-ccccchhhHHHHHHHHhcCCE-EEEEe
Q 006746 175 MKKRIMDFL-N--ISENDYGMVFTANRTSAFKLLAESYP---FMSVKNLLTV-YDYESEAVEAMIRTSEKRGAR-VMSAE 246 (632)
Q Consensus 175 ~R~~ia~~l-~--a~~~ey~vvft~naT~al~lv~~sl~---~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~-v~~v~ 246 (632)
.|+.+++++ | .+.+....+-|.++|.|++..+..+- ..+||+|+++ -.+++ +.. ..+..|++ |...+
T Consensus 92 lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~--y~~---i~~~aG~~~V~~~~ 166 (420)
T 4h51_A 92 FIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPN--HYG---VVKAAGWKNICTYA 166 (420)
T ss_dssp HHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTH--HHH---HHHHTTCCCEEEEE
T ss_pred HHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchh--HHH---HHHHcCCeEEEeec
Confidence 677777764 3 22222234558899999887665442 3689997654 34442 222 33556776 44443
Q ss_pred c-cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEecc-ccCCCC---CC
Q 006746 247 F-SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDAC-ALGPKD---MD 317 (632)
Q Consensus 247 ~-~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaa-q~~g~~---m~ 317 (632)
. +..+..++.+.+.+.+...+ +++.++...-.+|+||..++.+ | +++|++++++++.|-+ +-+... ..
T Consensus 167 ~~~~~~~~~d~~~~~~~l~~~~---~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~ 243 (420)
T 4h51_A 167 YYDPKTVSLNFEGMKKDILAAP---DGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTD 243 (420)
T ss_dssp CEEGGGTEECHHHHHHHHHHSC---SSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHH
T ss_pred cccccccCCCHHHHHHHHhccC---CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccc
Confidence 3 22445678888888887543 3457777788899999999876 5 5678899999999986 322210 00
Q ss_pred CC----CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 318 SF----GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 318 ~l----dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
.. ..+....=+++.||-|.||.+-.-+|++.+..+..+
T Consensus 244 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~ 285 (420)
T 4h51_A 244 AYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKT 285 (420)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHH
T ss_pred hHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHH
Confidence 00 001112236777999988864344899988766543
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-05 Score=89.50 Aligned_cols=101 Identities=10% Similarity=0.121 Sum_probs=61.9
Q ss_pred HHHHHHHHhcC--cCCCceeEEEEecc-CCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--CCCCCCCCCC
Q 006746 257 EKLRKMVVSKG--KKKKQRGLFVFPLH-SRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--MDSFGLSLVR 325 (632)
Q Consensus 257 ~~l~~~i~~~~--~~~~~~~Lv~~~~~-sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~~ldls~~~ 325 (632)
+.|++.|.+.. ....++..|++--+ ....|...| ++ +.++|+++|+++++|-+|.+ |.. +.....-...
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~ 656 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK 656 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC
Confidence 45666664210 11235677777775 888898886 77 88999999999999987663 321 1111111236
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
||+++ +=|.+|..---+|++.+++++++.+.+
T Consensus 657 PDiit--lsK~L~gG~~Plgav~~~~~i~~~~~~ 688 (831)
T 4a0g_A 657 PDIAC--FAKLLTGGMVPLAVTLATDAVFDSFSG 688 (831)
T ss_dssp CSEEE--ECGGGGTTSSCCEEEEECHHHHHTTCS
T ss_pred CcEEE--EecccccCccCcEEEEECHHHHHHHhc
Confidence 89875 459665200125999999987765543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 632 | |||
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.95 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.95 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.94 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.92 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.83 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.8 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.78 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.76 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.76 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.75 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.73 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.71 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.7 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.66 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.64 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.6 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.57 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.57 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.57 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.56 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.56 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.56 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.55 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.53 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.51 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.51 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.5 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.49 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.48 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.47 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.45 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.43 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.43 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.42 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.41 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.41 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.41 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.41 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.39 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.38 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.38 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.37 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.36 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.35 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.35 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.34 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.34 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.34 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.32 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.3 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.3 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.25 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.24 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.2 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.2 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.18 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.17 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.06 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.06 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.99 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 98.94 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 98.87 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 98.87 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 98.85 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.8 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.79 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 98.76 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.76 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.74 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 98.73 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 98.61 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.59 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.27 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-56 Score=484.35 Aligned_cols=389 Identities=20% Similarity=0.257 Sum_probs=320.3
Q ss_pred hHHHHHHhhccCcCCC----CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccc-ccccc
Q 006746 92 QIDQIRAKEYYQLSLS----NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGG 166 (632)
Q Consensus 92 ~~d~iR~~ef~~L~~~----~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~-~~~g~ 166 (632)
++|++|+ +||.|+.. +.|||||+++|++|++|++++.+++... ++||++. +..|.
T Consensus 3 d~~~vR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~-------------------~~n~~~~~~~~~~ 62 (405)
T d1jf9a_ 3 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHG-------------------YAAVHRGIHTLSA 62 (405)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHT-------------------CCCCSSCSSHHHH
T ss_pred CHHHHHH-hChhcccCcCCCCeEEEeCccccCCCHHHHHHHHHHHHhc-------------------cCCCccchhHHHH
Confidence 7999998 79999521 2489999999999999999987765321 1455532 22344
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhh---CCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEE
Q 006746 167 QESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAES---YPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 167 ~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~s---l~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
...+.++++|+.|+++||+.+. ++|+||+|+|+|+++++.+ ..+++|++|+ +..||+++..+| +.++++.|++|
T Consensus 63 ~~~~~~e~~R~~ia~~l~~~~~-~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~-~~~a~~~g~~v 140 (405)
T d1jf9a_ 63 QATEKMENVRKRASLFINARSA-EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPW-QMLCARVGAEL 140 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCG-GGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHH-HHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCc-ccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHH-HHHHHHcCcEE
Confidence 5578899999999999998643 3799999999999999988 5678999965 678999976666 67889999999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
+++|++ +++.++.++++++++++ ++||+++|++|.||.++|++ |+++||++|++++||++|++|+ .++|+
T Consensus 141 ~~~~~~-~~g~~~~~~~~~~i~~~------t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~--~~id~ 211 (405)
T d1jf9a_ 141 RVIPLN-PDGTLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH--HPVDV 211 (405)
T ss_dssp EEECBC-TTSCBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCH
T ss_pred EEECCC-CCCcCCHHHHHHhccCC------cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccc--cccch
Confidence 999998 78899999999888765 49999999999999999999 9999999999999999999998 79999
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
+++++||+++|+||||| |.|+|+|||+++.+..+.|...+ +......... .+ .....+.++
T Consensus 212 ~~~~~D~~~~s~hK~~G--p~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~r~----- 273 (405)
T d1jf9a_ 212 QALDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSE-GT----------TWTKAPWRF----- 273 (405)
T ss_dssp HHHTCSEEEEEGGGTTS--CSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTT-CC----------EECCTTGGG-----
T ss_pred hhcCCceeecccccccc--CCCceeeeechhhhcccCcccccccccCcccccc-cc----------ccccchhhh-----
Confidence 99999999999999998 99999999999998888776554 2222111100 00 000000111
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
+.||++++.+.++. .|+++++++|++.|.+|.+.|.+++.+.
T Consensus 274 --------------e~GT~~~~~~~~l~------------------------~al~~~~~~g~~~i~~~~~~L~~~~~~~ 315 (405)
T d1jf9a_ 274 --------------EAGTPNTGGIIGLG------------------------AALEYVSALGLNNIAEYEQNLMHYALSQ 315 (405)
T ss_dssp --------------CCSSCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred --------------cCCCCcHHHHHHHH------------------------HHHHHHHHhChHHHHHHHHHHHHHHHhh
Confidence 35778888888887 9999999999999999999999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
+..+ +.+.+++|. .|+++++|++++ ++++.+..+++++||.+|+|++|..+....+
T Consensus 316 l~~~--------~~~~~~~~~---~r~~ivsf~~~~-----~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~-------- 371 (405)
T d1jf9a_ 316 LESV--------PDLTLYGPQ---NRLGVIAFNLGK-----HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY-------- 371 (405)
T ss_dssp HTTS--------TTEEEESCT---TCCSEEEEEETT-----CCHHHHHHHHHHTTEECEEECTTCHHHHHHT--------
T ss_pred hhcC--------CcccccCCc---CcCcEEEEEcCC-----CCHHHHHHHHHHCCcEEEccchhhhhHHHhc--------
Confidence 9887 678999985 589999999987 6788898889999999999999997654332
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+ ..|+||+|+|+|||.|||++|+++|++++.
T Consensus 372 -------------------~-~~g~iRiS~~~ynt~eDid~l~~~l~~i~r 402 (405)
T d1jf9a_ 372 -------------------N-VPAMCRASLAMYNTHEEVDRLVTGLQRIHR 402 (405)
T ss_dssp -------------------T-CSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -------------------C-CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 1 247999999999999999999999998764
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=1.7e-54 Score=468.76 Aligned_cols=391 Identities=18% Similarity=0.250 Sum_probs=317.1
Q ss_pred HHHHHHhhccCcCCC----CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccc-cccccc
Q 006746 93 IDQIRAKEYYQLSLS----NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQ 167 (632)
Q Consensus 93 ~d~iR~~ef~~L~~~----~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~-~~~g~~ 167 (632)
...||+ +||.|+.. +.|||||+++|++|+.|++++.+++.. .++|+++. +..|..
T Consensus 4 ~a~iR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~-------------------~~~n~~s~~~~~~~~ 63 (408)
T d1t3ia_ 4 AATVRQ-DFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYEN-------------------DNANVHRGAHQLSVR 63 (408)
T ss_dssp HHHHGG-GCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHH-------------------TCCCC--CCSHHHHH
T ss_pred HHHHHH-hCcccccccCCCCeEEeeCccccCCCHHHHHHHHHHHHh-------------------cCCCCCchhhHHHHH
Confidence 346886 79999521 249999999999999999998775432 12566543 334666
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC---CCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEE
Q 006746 168 ESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY---PFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl---~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
..++++++|+.++++||+++.+ .|+||+|+|+++++++.++ ++++|++|+ +..+|+++...| ...+++.|++++
T Consensus 64 ~~~~~e~aR~~ia~llga~~~~-~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~-~~~~~~~g~~v~ 141 (408)
T d1t3ia_ 64 ATDAYEAVRNKVAKFINARSPR-EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPW-QMVAAKTGAVLK 141 (408)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGG-GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHH-HHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCcc-cEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhh-hhhhhccCceEe
Confidence 6789999999999999998543 6999999999999999884 678999976 567999865665 567788999999
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS 322 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls 322 (632)
.+|.+ ..+.++.++|+++++++ ++||+++|++|.||.++|++ |.++||++|++++|||+|++|+ .++|++
T Consensus 142 ~~~~~-~~~~~~~~~l~~~~~~~------t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~--~~id~~ 212 (408)
T d1t3ia_ 142 FVQLD-EQESFDLEHFKTLLSEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH--YPLDVQ 212 (408)
T ss_dssp EECBC-TTSSBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHH
T ss_pred eeecc-ccccccHHHhhhccCCC------ceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccc--cccccc
Confidence 99987 67778999999988765 59999999999999999999 9999999999999999999998 799999
Q ss_pred CCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccc
Q 006746 323 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 402 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt 402 (632)
++++||+++|+|||+| |.|+|+|||+++.+..++|...||......... .+ .....+.++
T Consensus 213 ~~~~D~~~~s~hK~~g--p~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~-~~----------~~~~~~~r~------- 272 (408)
T d1t3ia_ 213 LIDCDWLVASGHKMCA--PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFD-HF----------TTGELPHKF------- 272 (408)
T ss_dssp HHTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSS-CE----------EECCTTGGG-------
T ss_pred ccCCceEEeccccccC--CCCccccccchhhhhcCCceecCCccccccccc-cc----------ccCCchhhh-------
Confidence 9999999999999988 999999999999887776666554432111000 00 000000111
Q ss_pred cCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 006746 403 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 403 ~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
+.||+|++.+.++. .||+++.++|+++|.+|...|.+++.+.+.
T Consensus 273 ------------e~Gt~~~~~~~~l~------------------------~al~~~~~~g~~~i~~~~~~l~~~l~~~~~ 316 (408)
T d1t3ia_ 273 ------------EAGTPAIAEAIALG------------------------AAVDYLTDLGMENIHNYEVELTHYLWQGLG 316 (408)
T ss_dssp ------------CCSSCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------cCCcHHHHHHHHHH------------------------HHHHHHHHcCHHHHHHHHHHHHhHHhhhhc
Confidence 36778888888887 999999999999999999999999999998
Q ss_pred ccCCCCCCCCCcEEEECCCCC-CCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhh
Q 006746 483 KLQHPNTEGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE 561 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~-~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~ 561 (632)
++ |.++++++..+ ..++++++|++++ ++++.|.+.++++||.+++|++|+.+.....
T Consensus 317 ~~--------~~~~~~~~~~~~~~~~~iv~f~~~~-----~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~--------- 374 (408)
T d1t3ia_ 317 QI--------PQLRLYGPNPKHGDRAALASFNVAG-----LHASDVATMVDQDGIAIRSGHHCTQPLHRLF--------- 374 (408)
T ss_dssp TC--------TTEEEESCCGGGSCBCSEEEEEETT-----BCHHHHHHHHHTTTEECBCSCTTCHHHHHHT---------
T ss_pred cC--------ccccccCCCccccCcceEEEEEeCC-----CCHHHHHHHHhhCCcEEecCcccccHHHHhh---------
Confidence 87 77999998643 4578999999988 7888898888999999999999997643221
Q ss_pred hhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 562 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
...++||+|+|+|||++||++|+++|++.+.
T Consensus 375 -------------------~~~g~vRiS~~~ynt~~did~li~~L~~~~~ 405 (408)
T d1t3ia_ 375 -------------------DASGSARASLYFYNTKEEIDLFLQSLQATIR 405 (408)
T ss_dssp -------------------TCCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -------------------cCCccEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 1246899999999999999999999998654
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=8.7e-46 Score=394.66 Aligned_cols=370 Identities=13% Similarity=0.124 Sum_probs=285.7
Q ss_pred hccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 100 ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
|||.| ++.+||||+++|+.|..|++++.+++.... .|++.....+....++++++|+.+
T Consensus 1 ~fp~l--~~~~yld~~~~~~~p~~v~ea~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~r~~l 59 (381)
T d1elua_ 1 QFPGL--ANKTYFNFGGQGILPTVALEAITAMYGYLQ-------------------ENGPFSIAANQHIQQLIAQLRQAL 59 (381)
T ss_dssp CCGGG--TTSEECCTTTCCCCCHHHHHHHHHHHHHHH-------------------HHCSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC--CCCEEeeCCcccCCCHHHHHHHHHHHHHhh-------------------cCCCccchhhHHHHHHHHHHHHHH
Confidence 69999 789999999999999999999776543210 111111111222357788999999
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccC-HH
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRIN-SE 257 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~-~~ 257 (632)
++++|++++ +|+||+|+|+|+++++.++.+++|++|++ ..+|++. ...+...+++.|++++.+|.+......+ .+
T Consensus 60 a~~~~~~~~--~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~ 136 (381)
T d1elua_ 60 AETFNVDPN--TITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGI-IAIVQAIAARFGITYRFFPVAATLNQGDAAA 136 (381)
T ss_dssp HHHTTSCGG--GEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHH-HHHHHHHHHHHCCEEEEECCGGGSSSSCHHH
T ss_pred HHHhCCCcc--cEEEECChHHHhhhcchhhhhcCCceEEEecccccee-eeccccccccccccccccccccccccchHHH
Confidence 999999876 69999999999999999999999999765 4678774 4444667788999999998762221122 33
Q ss_pred HHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh----CCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 006746 258 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE----NDWHILIDACALGPKDMDSFGLSLVRPDFLICS 332 (632)
Q Consensus 258 ~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~----~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S 332 (632)
.+++.++ ++++++++++++|.||.++|++ |+++||+ .|+.+++|++|++|+ .++|++++++||+++|
T Consensus 137 ~l~~~i~------~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~--~~~~~~~~~~D~~~~s 208 (381)
T d1elua_ 137 VLANHLG------PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS--LPLDFSRLEVDYYAFT 208 (381)
T ss_dssp HHHTTCC------TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT--BCCCTTTSCCSEEEEE
T ss_pred HHHhhhc------ccccccccccccccccccchhhHHHHHHhhccccccccccccccccccc--cccccccccccccccc
Confidence 4444333 3579999999999999999999 9999987 479999999999998 6999999999999999
Q ss_pred cccccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchh
Q 006746 333 FYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI 411 (632)
Q Consensus 333 ~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~ 411 (632)
+||++|. |.|+|+||++++..+.++|...| +.+..... .+.. .+. .....
T Consensus 209 ~~K~~~~-p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~------~~~---~~~~~---------------- 259 (381)
T d1elua_ 209 GHKWFAG-PAGVGGLYIHGDCLGEINPTYVGWRSITYGAK---GEPT------GWA---EGGKR---------------- 259 (381)
T ss_dssp SSSTTCC-CTTCEEEEECTTTGGGCCCCSCCTTTEEECTT---SCEE------EEC---SGGGG----------------
T ss_pred ccccccc-cchhhHHHhhHHHHHhcCcccccccccccccc---cccc------ccc---ccccc----------------
Confidence 9998876 89999999999999999988776 33221100 0000 000 00000
Q ss_pred hhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCH-HHHHHHHHHHHHHHHHHHHccCCCCCC
Q 006746 412 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL-TMISRRGRCLINWLVNALMKLQHPNTE 490 (632)
Q Consensus 412 ~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl-~~I~~r~~~L~~~L~~~L~~l~h~~~~ 490 (632)
...||+++..+.++. ++++.+.++|. +.+.+|.+.+.++|.++|.++
T Consensus 260 --~~~gt~~~~~~~~~~------------------------~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~------ 307 (381)
T d1elua_ 260 --FEVATSAYPQYAGLL------------------------AALQLHQRQGTAEERYQAICQRSEFLWRGLNQL------ 307 (381)
T ss_dssp --GCCSCCCHHHHHHHH------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred --cccccccchhhhhhh------------------------hhhhhHHHhcccccchhhhhhHHHHHHHHHhcC------
Confidence 125667777777776 89999999885 555789999999999999998
Q ss_pred CCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccc
Q 006746 491 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 570 (632)
Q Consensus 491 G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~ 570 (632)
|.++++++. ..++++|+|++.++ .+.+.+.++++++||.+++-
T Consensus 308 --~~~~~~~~~--~~~~~~vsf~~~~~----~~~~~i~~~L~~~gi~v~~~----------------------------- 350 (381)
T d1elua_ 308 --PHVHCLATS--APQAGLVSFTVDSP----LGHRAIVQKLEEQRIYLRTI----------------------------- 350 (381)
T ss_dssp --TTEEESCSS--CCSSSEEEEEECSS----SCHHHHHHHHHHTTEECEEE-----------------------------
T ss_pred --CCeEecCCC--CccccEEEEEcCCC----CCHHHHHHHHHhCCcEEEec-----------------------------
Confidence 679999885 35899999999764 46777888888899988631
Q ss_pred ccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 571 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 571 ~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
...++||+|+|+|||.|||++|+++|++|
T Consensus 351 ----------~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 351 ----------ADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp ----------TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred ----------CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 02469999999999999999999999876
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-45 Score=390.30 Aligned_cols=367 Identities=17% Similarity=0.155 Sum_probs=278.7
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ 188 (632)
+||||++|+++.|++|+|++.+++.. .++||++.+..+....+.++++|+++++++|++++
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~~-------------------~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~ 62 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYRE-------------------KYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS 62 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHT-------------------CCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred EEEEECcccccCCHHHHHHHHHHHHH-------------------cCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 69999999999999999998876542 12677766555666678899999999999999987
Q ss_pred CccEEEeCCHHHHHHHHHhhC---CCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 189 DYGMVFTANRTSAFKLLAESY---PFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 189 ey~vvft~naT~al~lv~~sl---~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
+|+|++|+|+|+++++.++ .+.+|+.|++..++++....+ .+.++++|++|+.+|++ +++.+|.++++++|++
T Consensus 63 --~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~g~~v~~vp~~-~~~~id~~~l~~~i~~ 138 (376)
T d1eg5a_ 63 --EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLET-MKYLSMKGFKVKYVPVD-SRGVVKLEELEKLVDE 138 (376)
T ss_dssp --GEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHH-HHHHHHTTCEEEECCBC-TTSCBCHHHHHHHCCT
T ss_pred --cEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHH-HHHHHhcCCEEEEEcCC-CCCeECHHHHHHhcCC
Confidence 7999999999999998764 467788888887777755555 45678899999999998 6789999999999987
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHH--hhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIA--QENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a--~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
+ ++||+++|+++.||.++|++ +.+++ +..|++++||++|++|. .++|+.++++||+++|+|||+| |.
T Consensus 139 ~------t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~--~~~d~~~~~~D~~~~s~~K~~g--p~ 208 (376)
T d1eg5a_ 139 D------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK--IPFSLEKLEVDYASFSAHKFHG--PK 208 (376)
T ss_dssp T------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT--SCCCCTTTCCSEEEEEGGGGTS--CT
T ss_pred C------ceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccc--ccccccccCccceecccceeec--CC
Confidence 5 49999999999999999999 88877 45599999999999998 7999999999999999999998 99
Q ss_pred ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccc
Q 006746 343 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 422 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~ 422 (632)
|+|+||++++. .++|...||... . .| +. |+.+..
T Consensus 209 G~~~l~~~~~~--~~~p~~~g~~~~-----~-~~----------------------~~----------------~~~~~~ 242 (376)
T d1eg5a_ 209 GVGITYIRKGV--PIRPLIHGGGQE-----R-GL----------------------RS----------------GTQNVP 242 (376)
T ss_dssp TCEEEEECTTS--CCCCSBCSSCTT-----T-TT----------------------BC----------------SCCCHH
T ss_pred CceeEEeccCc--ccCCcccCCCCc-----c-cc----------------------cC----------------Ccccch
Confidence 99999999875 466766552210 0 00 11 222233
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC
Q 006746 423 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 502 (632)
Q Consensus 423 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~ 502 (632)
.+..+. .+++.. ..+......+...+..++.++|..+ ... ++++.
T Consensus 243 ~~~~~~------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~-~~~~~- 287 (376)
T d1eg5a_ 243 GIVGAA------------------------RAMEIA-VEELSEAAKHMEKLRSKLVSGLMNL--------GAH-IITPL- 287 (376)
T ss_dssp HHHHHH------------------------HHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTT--------TCE-ECSCT-
T ss_pred hhhhHH------------------------HHhhcc-ccchhhhhhhhhhhhhhhccccccc--------ccc-ccccc-
Confidence 333332 344443 3467788888999999999999876 223 34443
Q ss_pred CCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCC
Q 006746 503 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 582 (632)
Q Consensus 503 ~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 582 (632)
...+..+++|++++ ++.+.+.++++++||.+|+|++|+++..... .++++..+- ....
T Consensus 288 ~~~~~~~~~~~~~~-----~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~-----~~l~~~gi~------------~~~~ 345 (376)
T d1eg5a_ 288 EISLPNTLSVSFPN-----IRGSTLQNLLSGYGIYVSTSSACTSKDERLR-----HVLDAMGVD------------RRIA 345 (376)
T ss_dssp TSBCTTEEEEECTT-----CCHHHHHHHHHHTTEECBC-----------------CHHHHTTCC------------HHHH
T ss_pred cccccceeeeccCC-----CCHHHHHHHHhhCCeEEeCcchhcCCccchh-----HHHHHcCCC------------cccC
Confidence 24577899999998 7889999999999999999999998754332 333332110 0123
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 583 ITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 583 ~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.++||+|+|+|||.||||+|+++|+++++
T Consensus 346 ~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 346 QGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp HHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999876
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-43 Score=378.34 Aligned_cols=370 Identities=18% Similarity=0.144 Sum_probs=281.5
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccc-ccccchhHHHHHHHHHHHHHcCCCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL-LHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~-~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
.||||++++|+.|+.|++++.+++.... .++||++.. ..|....++++++|++|++++|+++
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~-----------------~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~ 65 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDG-----------------TFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 65 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTS-----------------CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcc-----------------ccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999988765321 125666543 2344567889999999999999998
Q ss_pred CCccEEEeCCHHHHHHHHHhhCC---CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHH
Q 006746 188 NDYGMVFTANRTSAFKLLAESYP---FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 263 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~---~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i 263 (632)
+ +|+||+|+|++++.++.++. +++|++|++. .+|++ ...++ +.++..|++|+.++.+ ..+.+++++++++|
T Consensus 66 ~--~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s-~~~~~-~~~~~~G~~v~~v~~~-~~~~~d~~~~~~~i 140 (391)
T d1p3wa_ 66 R--EIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKA-VLDTC-RQLEREGFEVTYLAPQ-RNGIIDLKELEAAM 140 (391)
T ss_dssp G--GEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHH-HHHHH-HHHHHTTCEEEEECCC-TTSCCCHHHHHHHC
T ss_pred C--cEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccch-HHHHH-HHHHHcCCEEEEeCCC-CCCeEcHHHHHHhC
Confidence 6 79999999999999998764 5899998765 56665 44443 4567889999999998 67789999999999
Q ss_pred HhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 264 VSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 264 ~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
+++ ++||++++++|.||.++|++ |+++||++|+++++|++|++|. .++|++.+++||+++|+|||+| |.
T Consensus 141 ~~~------T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~--~~~d~~~~~~D~~~~s~~k~~g--~~ 210 (391)
T d1p3wa_ 141 RDD------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK--LPIDLSQLKVDLMSFSGHKIYG--PK 210 (391)
T ss_dssp CTT------EEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTT--BCCCTTTSCCSEEEEESTTTTS--CS
T ss_pred CCC------cEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCC--ccccchhccccccccccccccC--CC
Confidence 875 49999999999999999999 9999999999999999999998 6999999999999999999999 88
Q ss_pred ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccc
Q 006746 343 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 422 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~ 422 (632)
|+|++|++++.+..+.+...||... . .+ + .|+.+++
T Consensus 211 g~g~~~~~~~~~~~~~~~~~gg~~~------------~-------------~~---~----------------~~~~~~~ 246 (391)
T d1p3wa_ 211 GIGALYVRRKPRVRIEAQMHGGGHE------------R-------------GM---R----------------SGTLPVH 246 (391)
T ss_dssp SCEEEEECBTTBCCCCCSSCSSCTT------------T-------------TT---S----------------CSCCCHH
T ss_pred ceEEEEEecchhcccCCcccCCccc------------c-------------Cc---c----------------cCcchhh
Confidence 9999999999888887776653210 0 00 1 2333444
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC
Q 006746 423 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 502 (632)
Q Consensus 423 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~ 502 (632)
...++. .+++...+. .....+|++.|..+|.++|.++ +.+.+..+.
T Consensus 247 ~~~~l~------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~- 292 (391)
T d1p3wa_ 247 QIVGMG------------------------EAYRIAKEE-MATEMERLRGLRNRLWNGIKDI--------EEVYLNGDL- 292 (391)
T ss_dssp HHHHHH------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTS--------TTEEECSCT-
T ss_pred hhhhhh------------------------hhhhHHHHH-hhHHHHHHHHHHHHHHHHHHhh--------cCeeecccc-
Confidence 455554 556655554 4555678999999999999887 456665443
Q ss_pred CCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCC
Q 006746 503 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 582 (632)
Q Consensus 503 ~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 582 (632)
......+++|.+.. ++...+...+ .+|.+|+|++|.++..... .++....+. +...
T Consensus 293 ~~~~~~~~~~~~~~-----~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~-----~~l~~~g~~------------~~~~ 348 (391)
T d1p3wa_ 293 EHGAPNILNVSFNY-----VEGESLIMAL--KDLAVSSGSACTSASLEPS-----YVLRALGLN------------DELA 348 (391)
T ss_dssp TTSCTTEEEEEETT-----SCHHHHHHHT--TTEECBCCCC------CCC-----HHHHHHTCC------------HHHH
T ss_pred cccCceEEEEEeCC-----CChHHHHHHh--CCCEEEccccccCCccchh-----HHHHHcCCC------------cccc
Confidence 34467788888877 5555554433 6899999999988654322 233322110 1123
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 583 ITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 583 ~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.|.||||+|+|||.|||++|++.|++++..
T Consensus 349 ~g~iRiS~~~~nt~edid~l~~~l~~~l~~ 378 (391)
T d1p3wa_ 349 HSSIRFSLGRFTTEEEIDYTIELVRKSIGR 378 (391)
T ss_dssp HTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999998775
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=4.2e-43 Score=376.01 Aligned_cols=377 Identities=12% Similarity=0.124 Sum_probs=277.1
Q ss_pred HHHHHHhhccCcCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHH
Q 006746 93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLE 172 (632)
Q Consensus 93 ~d~iR~~ef~~L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~ 172 (632)
+..+|+ +||.+ ++.||||+++.|+.|+.|++++.+++... | +|++....++....+++
T Consensus 15 l~~~R~-~F~~~--~~~iYLd~as~g~~p~~v~~a~~~~l~~~--------~-----------~~~~~~~~~~~~~~~~~ 72 (404)
T d1qz9a_ 15 LAPLRQ-QFALP--EGVIYLDGNSLGARPVAALARAQAVIAEE--------W-----------GNGLIRSWNSAGWRDLS 72 (404)
T ss_dssp TGGGGG-GBCCC--TTCEECCTTTSCCCBTTHHHHHHHHHHTC--------C-----------CCCGGGHHHHTSGGGHH
T ss_pred HHHHHh-cCCCC--CCCEEcCCcccccCCHHHHHHHHHHHHHH--------h-----------cccCcccccchhHHHHH
Confidence 445675 69976 78999999999999999999988765321 1 23322221222235788
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhC-----CCCCCCeE-EEeccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESY-----PFMSVKNL-LTVYDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl-----~~~~gd~i-lt~~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+++|+++++++|++++ +|+||+|+|+++++++.+. .+.+++.+ ++..+|+++...|.+..++.....+
T Consensus 73 e~~R~~iA~llga~~~--ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~---- 146 (404)
T d1qz9a_ 73 ERLGNRLATLIGARDG--EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY---- 146 (404)
T ss_dssp HHHHHHHHTTTTCCTT--SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC----
T ss_pred HHHHHHHHHHhCCCCC--cEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeece----
Confidence 9999999999999987 6999999999999887643 24567774 5667777755555444333333322
Q ss_pred ccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCC
Q 006746 247 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVR 325 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~ 325 (632)
+ ..+.++.++++++|+++ ++||+++|++|.||.++|++ |+++||++|+.++||++|++|. .+++++.++
T Consensus 147 -~-~~~~~~~~~~~~~i~~~------T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~--~~~~~~~~~ 216 (404)
T d1qz9a_ 147 -T-LRLVDSPEELPQAIDQD------TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA--VPVDLHQAG 216 (404)
T ss_dssp -E-EEEESSGGGHHHHCSTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHT
T ss_pred -e-ccccccchhHHHhcCCC------ceEEEEecccccccceecHHHHhccccccccceeEEeeccccc--ccccccccc
Confidence 2 23445677888888765 49999999999999999999 9999999999999999999998 799999999
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhccccC
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 404 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~ 404 (632)
+||+++|+|||++.+|.|.|++|++++..+.+.+...+ |.... .+.... .......+..
T Consensus 217 ~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~---------- 276 (404)
T d1qz9a_ 217 ADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSR------QFAMEP----RYEPSNGIAR---------- 276 (404)
T ss_dssp CSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCT------TSCCCS----SCCBCSSGGG----------
T ss_pred ceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccc------cccccc----cccccccchh----------
Confidence 99999999997644476789999999988777665443 21110 000000 0000000001
Q ss_pred CCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Q 006746 405 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL 484 (632)
Q Consensus 405 f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l 484 (632)
.+.|+++...+..+. .++.++..+|++.|.++...+.+++...+..+
T Consensus 277 ---------~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 323 (404)
T d1qz9a_ 277 ---------YLCGTQPITSLAMVE------------------------CGLDVFAQTDMASLRRKSLALTDLFIELVEQR 323 (404)
T ss_dssp ---------GCCSCCCHHHHHHHH------------------------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hhhhhccchhHHHHH------------------------HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhh
Confidence 124556666666665 88889999999999999999999887776655
Q ss_pred CCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhh
Q 006746 485 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 564 (632)
Q Consensus 485 ~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~ 564 (632)
.. .+.++|+||.+...|+++|+|++.+ +..|.+.++++||.+.
T Consensus 324 ~~-----~~~~~i~~p~~~~~r~~~vsf~~~~-------~~~v~~~L~~~gi~~~------------------------- 366 (404)
T d1qz9a_ 324 CA-----AHELTLVTPREHAKRGSHVSFEHPE-------GYAVIQALIDRGVIGD------------------------- 366 (404)
T ss_dssp HT-----TSCCEECSCSSGGGBCSEEEEECTT-------HHHHHHHHHTTTEECE-------------------------
T ss_pred cc-----CCCEEEECCCCccceeeEEEEecCC-------HHHHHHHHHHCCCEEe-------------------------
Confidence 32 3679999998878899999999864 4556666677888542
Q ss_pred ccccccccccccccCCCCCcEEEEccC-CCCCHHHHHHHHHHHHHhhhh
Q 006746 565 REAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~VRvSlg-~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+..++||||++ +|||++||++|+++|+++|+.
T Consensus 367 ---------------~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 367 ---------------YREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp ---------------EETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------ecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 012369999995 799999999999999999765
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-35 Score=314.48 Aligned_cols=362 Identities=14% Similarity=0.093 Sum_probs=267.9
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
.++ .|=..|=+.+++.|++++....- + | -+....++++++|+.++++||++
T Consensus 18 ~~~-~l~~pGP~~~~~~Vl~am~~~~i-----------------------~---H--Rs~~f~~i~~ea~~~l~~llg~~ 68 (388)
T d1h0ca_ 18 PNQ-LLLGPGPSNLPPRIMAAGGLQMI-----------------------G---S--MSKDMYQIMDEIKEGIQYVFQTR 68 (388)
T ss_dssp CCC-EECSSSCCCCCHHHHHHHTCCCC-----------------------C---T--TSHHHHHHHHHHHHHHHHHHTCC
T ss_pred CcC-ccccCCCCCCCHHHHHHhCcCCC-----------------------C---C--CCHHHHHHHHHHHHHHHHHhCCC
Confidence 444 55556667889999999754110 0 0 02234689999999999999997
Q ss_pred CCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 187 ENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 187 ~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
++|.|+||+|+|+|++.++.++ +.+|+++++ ..++++ ..| ...++..+..+..++.+ ....++.+++.+.+..
T Consensus 69 -~~~~ii~~gsgT~a~~~~i~~l-~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 142 (388)
T d1h0ca_ 69 -NPLTLVISGSGHCALEAALVNV-LEPGDSFLVGANGIWG--QRA-VDIGERIGARVHPMTKD-PGGHYTLQEVEEGLAQ 142 (388)
T ss_dssp -CSEEEEESSCHHHHHHHHHHHH-CCSSCCEEECBSSHHH--HHH-HHHHHHHC--CBCCBCC-TTCCCCHHHHHHHHHH
T ss_pred -CCcEEEEcCcHHHHHHHHHHHh-hccCCceeeeccccee--eee-ccccccccccccccccC-CccccchHHHHHHhcc
Confidence 4578999999999999999999 778888664 456654 334 34567788888888777 4456888888887765
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCce
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF 344 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~ 344 (632)
. ++++++++|++|.||.++|++ |+++||++|++++||++|++|. .++|++.+++||+++|+||++|. |.|+
T Consensus 143 ~-----~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~--~~~d~~~~~~D~~~~s~~K~~~g-p~g~ 214 (388)
T d1h0ca_ 143 H-----KPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGG--TPLYMDRQGIDILYSGSQKALNA-PPGT 214 (388)
T ss_dssp H-----CCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-CTTC
T ss_pred C-----CcceEEEeeeeeccccccCHHHHHHHhhcccccceecccccccc--ccccccccccceecccccccccC-CCce
Confidence 3 258999999999999999999 9999999999999999999998 69999999999999999997765 9999
Q ss_pred EEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchh
Q 006746 345 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI 424 (632)
Q Consensus 345 G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i 424 (632)
|++++++..++.+.+...++. .........+ .+.. ..+...+ ..+|+++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~-~~~~~~~---------~~~t~~~~~~ 266 (388)
T d1h0ca_ 215 SLISFSDKAKKKMYSRKTKPF-SFYLDIKWLA-----------------NFWG-CDDQPRM---------YHHTIPVISL 266 (388)
T ss_dssp EEEEECHHHHHHHTTCSSCCS-CSTTCHHHHH-----------------HHTT-CSSSCCC---------CCSCCCHHHH
T ss_pred EEEeecHHHHHhhhhcccccc-ccccccchhh-----------------hhhh-hcccccc---------ccccccHHHH
Confidence 999999988776655432210 0000000000 0000 0000011 2467788888
Q ss_pred hHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCC
Q 006746 425 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF 504 (632)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~ 504 (632)
.++. .+++++.+.|++.+.+|.+.|..++++.+..+ |. .++.+....
T Consensus 267 ~~~~------------------------~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~------g~---~~~~~~~~~ 313 (388)
T d1h0ca_ 267 YSLR------------------------ESLALIAEQGLENSWRQHREAAAYLHGRLQAL------GL---QLFVKDPAL 313 (388)
T ss_dssp HHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH------TC---CBSSCSGGG
T ss_pred HHHH------------------------HHHHHHHHhccccccccccchhHHHHHHHhhc------Cc---ccccCCHHH
Confidence 8887 89999999999999999999999999999988 32 233333223
Q ss_pred CCCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCC
Q 006746 505 DRGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 583 (632)
Q Consensus 505 ~rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
.+.++++|++++ | +++..+ ++|++++||.++.|..|. ..
T Consensus 314 rs~~i~~~~~p~--~--~~~~~~~~~L~~~~gI~v~~G~~~~------------------------------------~~ 353 (388)
T d1h0ca_ 314 RLPTVTTVAVPA--G--YDWRDIVSYVIDHFDIEIMGGLGPS------------------------------------TG 353 (388)
T ss_dssp BCTTEEEEECCT--T--CCHHHHHHHHHHHHCEECEECCGGG------------------------------------TT
T ss_pred cCCeEEEEECCC--C--CCHHHHHHHHHhcCCEEEeCCchhh------------------------------------cC
Confidence 345788999864 1 566665 566788899999884321 23
Q ss_pred cEEEEc-cCCCCCHHHHHHHHHHHHHhhhh
Q 006746 584 TVVTAS-LGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 584 ~~VRvS-lg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
++|||| +|+++|.|||++|+++|+++|+.
T Consensus 354 ~~iRis~~g~~~t~edid~li~aL~~~L~~ 383 (388)
T d1h0ca_ 354 KVLRIGLLGCNATRENVDRVTEALRAALQH 383 (388)
T ss_dssp TEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 589999 89999999999999999999874
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.1e-34 Score=301.29 Aligned_cols=333 Identities=12% Similarity=0.087 Sum_probs=247.4
Q ss_pred hhHHHHHHHHHHHHHcCCC--CCCccEEEeCCHHHHHHHHHhhC--CCCCCCeEEE-eccccchhhHHHHHHHHhcCCEE
Q 006746 168 ESGLESAMKKRIMDFLNIS--ENDYGMVFTANRTSAFKLLAESY--PFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~--~~ey~vvft~naT~al~lv~~sl--~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
..++++++++.+.+++++. .+...|+||+|+|+|+++++.++ ++++||++++ ..+++++ .| ...+++.|..+
T Consensus 34 f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~--~~-~~~~~~~~~~~ 110 (382)
T d2bkwa1 34 FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSD--RF-ADCLRSYGAQV 110 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHH--HH-HHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhh--hh-hhhcccccccc
Confidence 3577888899999998862 23347999999999999999997 5688999764 4566653 23 34567789988
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALGPKDMDSF 319 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~g~~m~~l 319 (632)
..+...+....++.+++++++.+. ++++++++|+++.||..+|++ +.+.|+++ +++++|||+|++|. .++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~--~pi 183 (382)
T d2bkwa1 111 DVVRPLKIGESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC--EEF 183 (382)
T ss_dssp EEECCSSTTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT--SCC
T ss_pred ccccccCCCCccchhHHHHHhhhc-----cchheeeeeccccccccccchhhhhhccccccceeeeeeccccccc--ccc
Confidence 888655345557888888887653 368999999999999999999 88877665 69999999999998 799
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
|++.+++||+++|+||+++. |+|+|++|+|+++++.+++...+|... .+|.... .. .......+
T Consensus 184 d~~~~giD~~~~s~~K~l~g-P~G~g~l~vs~~~~~~~~~~~~~~~~~------~~~~~~~----~~-----~~~~~~~~ 247 (382)
T d2bkwa1 184 EFDEWGVDFALTASQKAIGA-PAGLSISLCSSRFMDYALNDSKNGHVH------GYFSSLR----RW-----TPIMENYE 247 (382)
T ss_dssp CTTTTTCSEEEEESSSTTCC-CSCEEEEEECHHHHHHHTCHHHHCCCS------CSTTCHH----HH-----HHHHHHHH
T ss_pred cccccCeeEEeecccccCcC-CCchhhhhccHHHHhhhhhcccCCCcc------cchhhhh----hh-----hhhhhccc
Confidence 99999999999999997744 999999999999988776643322111 0110000 00 00000000
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
... . ...+||+++.|++|. .+|+.+.+.|++++.+|.+.|++++++
T Consensus 248 ~~~-~---------~~~~Tp~~~~i~al~------------------------~aL~~~~~~g~~~~~~~~~~l~~~l~~ 293 (382)
T d2bkwa1 248 AGK-G---------AYFATPPVQLINSLD------------------------VALKEILEEGLHKRWDLHREMSDWFKD 293 (382)
T ss_dssp TTC-C---------CCSSCCCHHHHHHHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccc-c---------ccccCCcHHHHHHHH------------------------HHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0 125789999999998 999999999999999999999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCC-CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 558 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~r-g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~ 558 (632)
.+.+. ..+.++.+.....+ ..+++|++.+ +..+.++++++||.++.|..|.
T Consensus 294 ~l~~~--------~~~~~~~~~~~~~~s~~v~~~~~~~-------~~~~~~~L~~~gi~i~~G~~~~------------- 345 (382)
T d2bkwa1 294 SLVNG--------LQLTSVSRYPSNMSAHGLTAVYVAD-------PPDVIAFLKSHGVVIAGGIHKD------------- 345 (382)
T ss_dssp HHHTT--------TCCEESSCSSSTTBCSSCEEEECSC-------HHHHHHHHHHTTEECBCCCCTT-------------
T ss_pred Hhhhc--------ccccccccCchhccCCcEEEEcCCC-------HHHHHHHHHHCCeEEECCCChh-------------
Confidence 99875 33455554332333 4677787754 5677778889999999884332
Q ss_pred hhhhhhccccccccccccccCCCCCcEEEEc-cCCCCCHHHHHHHHHHHHHhh
Q 006746 559 VLEKTDREAKSKSDNNRKDKANLGITVVTAS-LGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvS-lg~~~t~eDV~rlv~~l~~~l 610 (632)
.+.+++||| +|+.++.|||++++++|..+.
T Consensus 346 ----------------------~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 346 ----------------------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp ----------------------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred ----------------------hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 234689999 899999999999998887653
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-32 Score=289.77 Aligned_cols=324 Identities=11% Similarity=0.059 Sum_probs=233.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.++++++|+++++++|+++++..|+||+|+|+++++++.++.++.++.+++..+++.... ...++..+..+..+...
T Consensus 32 ~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 108 (361)
T d1m32a_ 32 IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCG 108 (361)
T ss_dssp TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhH---HHHhhhhhccccccccc
Confidence 467899999999999999875568999999999999999997655555666665554222 23345556666666554
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPD 327 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~D 327 (632)
+......+........ ..++++++++|++|.||.++|++ |+++||++|++++|||+|++|. .++|+.++++|
T Consensus 109 -~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~--~~~d~~~~~~D 181 (361)
T d1m32a_ 109 -EVARPDVQAIDAILNA----DPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGG--IPMDIAALHID 181 (361)
T ss_dssp -TTSCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCS
T ss_pred -ccCCccchhhHHHHHh----ccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCc--ccccccccccc
Confidence 2223333333222221 12469999999999999999999 9999999999999999999998 69999999999
Q ss_pred EEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCc
Q 006746 328 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 407 (632)
Q Consensus 328 f~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~ 407 (632)
|+++|+||+++. |.|+|++|++++.++.+++...++.... ...+ ...+...+
T Consensus 182 ~~~~s~~K~l~g-p~G~g~l~~~~~~~~~~~~~~~~~~~~~----~~~~-----------------~~~~~~~~------ 233 (361)
T d1m32a_ 182 YLISSANKCIQG-VPGFAFVIAREQKLAACKGHSRSLSLDL----YAQW-----------------RCMEDNHG------ 233 (361)
T ss_dssp EEEEESSSTTCC-CSSEEEEEEEHHHHTTCTTCCSCSTTCH----HHHH-----------------HHHHHTTT------
T ss_pred eEEeeecccccC-CCCceEEEechhhhhhhccccccccccc----hhhh-----------------cccccccc------
Confidence 999999997654 8999999999999988887765522110 0000 00000000
Q ss_pred cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHccCC
Q 006746 408 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQH 486 (632)
Q Consensus 408 ~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G-l~~I~~r~~~L~~~L~~~L~~l~h 486 (632)
...+|+++..+.++. .+++.+...| .+.+..|...+.+.+.+.+..+
T Consensus 234 ------~~~~t~~~~~~~~~~------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 281 (361)
T d1m32a_ 234 ------KWRFTSPTHTVLAFA------------------------QALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-- 281 (361)
T ss_dssp ------CCSSCCCHHHHHHHH------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ------ccCCCCCchhhhHHH------------------------HHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc--
Confidence 013556666666665 6777666665 6788889999999999999887
Q ss_pred CCCCCCCcEEEECCCCCCCCC-cEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhc
Q 006746 487 PNTEGNALVKIYGPKIRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 565 (632)
Q Consensus 487 ~~~~G~p~v~Iygp~~~~~rg-~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~ 565 (632)
|. .+..++ ..|+ .+++|.++. +..++...+.+.+.++||.++.|.
T Consensus 282 ----g~---~~~~~~--~~rs~~v~~~~~p~--~~~~~~~~~~~~l~~~gi~i~~G~----------------------- 327 (361)
T d1m32a_ 282 ----GF---NTLLDD--ELHSPIITAFYSPE--DPQYRFSEFYRRLKEQGFVIYPGK----------------------- 327 (361)
T ss_dssp ----TC---CBSSCG--GGBCSSEEEEECCC--CTTCCHHHHHHHHHHTTEECEECC-----------------------
T ss_pred ----CC---cccCCh--hhcCCcEEEEECCC--CCCCCHHHHHHHHHHCCcEEECCC-----------------------
Confidence 42 233443 3344 566777653 333677888888888999988762
Q ss_pred cccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 566 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
....+.||||+..|+|.+||++|+++|++.|
T Consensus 328 --------------~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 328 --------------VSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp --------------CSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred --------------cCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 1234689999766789999999999999875
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=7.4e-32 Score=284.89 Aligned_cols=357 Identities=16% Similarity=0.123 Sum_probs=263.4
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
.+.||...|-...|..|++++....- +| .+.+..++++++|+.++++||++
T Consensus 17 p~~~l~~PGP~~v~~~Vl~am~~~~~--------------------------~h--r~~ef~~i~~~~r~~l~~ll~~~- 67 (377)
T d1vjoa_ 17 PSRLLLGPGPSNAHPSVLQAMNVSPV--------------------------GH--LDPAFLALMDEIQSLLRYVWQTE- 67 (377)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCC--------------------------CT--TSHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CcceeecCCCCCCCHHHHHHhCcCCC--------------------------CC--CCHHHHHHHHHHHHHHHHHhCCC-
Confidence 45799999999999999999754210 01 23345789999999999999997
Q ss_pred CCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhc
Q 006746 188 NDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK 266 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~ 266 (632)
++|.|+|++|+|++++.++.++ +.+|++++ +..+|.+. +....++..+..+..+...+.. ....+.......+.
T Consensus 68 ~~~~i~~~g~gT~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 142 (377)
T d1vjoa_ 68 NPLTIAVSGTGTAAMEATIANA-VEPGDVVLIGVAGYFGN---RLVDMAGRYGADVRTISKPWGE-VFSLEELRTALETH 142 (377)
T ss_dssp CSCEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH---HHHHHHHHTTCEEEEEECCTTC-CCCHHHHHHHHHHH
T ss_pred CCeEEEEcCcHHHHHHHHHHhc-cccccccceeeechhhh---hhhhhhhhhcccccccccCCCC-cccchhhhhhhhcC
Confidence 4578999999999999999998 67888854 55666653 3345567778888877766333 35555555544432
Q ss_pred CcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceE
Q 006746 267 GKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFG 345 (632)
Q Consensus 267 ~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G 345 (632)
.+++++++|++|.||+++|++ |.++||++|..++||++|++|. .++|++.+++||+++|+||+++. |.|+|
T Consensus 143 -----~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~--~~~~~~~~~~d~~~~s~~K~~~g-p~g~~ 214 (377)
T d1vjoa_ 143 -----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG--VPIFLDAWGVDLAYSCSQKGLGC-SPGAS 214 (377)
T ss_dssp -----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEECCSSSTTCS-CSSCE
T ss_pred -----cceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhh--hhhcccccccceeeecccccccC-CCEEE
Confidence 358999999999999999999 9999999999999999999998 69999999999999999996554 88999
Q ss_pred EEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhh
Q 006746 346 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS 425 (632)
Q Consensus 346 ~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~ 425 (632)
++++++..++...+...++. ....... ++ ..+ .... .+ ..+++++..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~----------------~~~---~~~~-~~---------~~~~~~~~~~~ 263 (377)
T d1vjoa_ 215 PFTMSSRAIEKLQRRRTKVA-NWYLDMN-LL----------------GKY---WGSE-RV---------YHHTAPINLYY 263 (377)
T ss_dssp EEEECHHHHHHHHTCSSCCS-CSTTCHH-HH----------------HHH---HSTT-CC---------CCSCCCHHHHH
T ss_pred EecchhhHHhhhhccCCCCc-ceeeccc-hh----------------hhc---cCcc-cc---------cccccceechh
Confidence 99999988765554332211 0000000 00 000 0000 00 13456666666
Q ss_pred HhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCC
Q 006746 426 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 505 (632)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~ 505 (632)
.+. .+++.+...|++.+.++.+.+..++++.|.+. |. .++.++. ..
T Consensus 264 ~l~------------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~------~~---~~~~~~~-~r 309 (377)
T d1vjoa_ 264 ALR------------------------EALRLIAQEGLANCWQRHQKNVEYLWERLEDI------GL---SLHVEKE-YR 309 (377)
T ss_dssp HHH------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------TC---CBSSCGG-GB
T ss_pred hhH------------------------HHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc------Cc---eeecChH-hc
Confidence 665 77788888999999999999999999999986 32 3344432 33
Q ss_pred CCcEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCc
Q 006746 506 RGPALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 584 (632)
Q Consensus 506 rg~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 584 (632)
..++++|++++ | +++..+ .+|++++||.++.|..| .+.+
T Consensus 310 s~~v~~~~~p~--~--~~~~~l~~~L~~~~gI~v~~G~~~------------------------------------~~~~ 349 (377)
T d1vjoa_ 310 LPTLTTVCIPD--G--VDGKAVARRLLNEHNIEVGGGLGE------------------------------------LAGK 349 (377)
T ss_dssp CSSEEEEECCT--T--CCHHHHHHHHHHHHCEECEECCGG------------------------------------GTTT
T ss_pred CCeEEEEECCC--C--CCHHHHHHHHHhcCCEEEecCccc------------------------------------ccCC
Confidence 45788899865 2 666666 45778889999988421 1335
Q ss_pred EEEEc-cCCCCCHHHHHHHHHHHHHhhh
Q 006746 585 VVTAS-LGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 585 ~VRvS-lg~~~t~eDV~rlv~~l~~~l~ 611 (632)
+|||| +|++||.|||++|+++|+++|.
T Consensus 350 ~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 350 VWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 89999 6999999999999999999873
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=1.4e-31 Score=284.30 Aligned_cols=358 Identities=14% Similarity=0.072 Sum_probs=259.7
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCc
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey 190 (632)
+|=..|=+.+++.|++++.... + + | .+....++++++|+.++++||++. .+
T Consensus 19 ~l~~PGP~~~~~~V~~Am~~~~----------------~-------~---h--r~~ef~~i~~~~r~~L~~ll~~~~-~~ 69 (388)
T d2ch1a1 19 IMMGPGPSNCSKRVLTAMTNTV----------------L-------S---N--FHAELFRTMDEVKDGLRYIFQTEN-RA 69 (388)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCC----------------C-------C---T--TCHHHHHHHHHHHHHHHHHHTCCC-SC
T ss_pred eeeeCCCCCCCHHHHHHhCcCC----------------C-------C---C--CCHHHHHHHHHHHHHHHHHhCCCC-Ce
Confidence 5656677778999999964321 0 0 1 233457899999999999999963 34
Q ss_pred cEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcC
Q 006746 191 GMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK 269 (632)
Q Consensus 191 ~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~ 269 (632)
.|+||+|+|.+++.++.++ +.+|+++++ ..++.+ ..| ...+++.|..+..+...+ ....+.+++++.+...
T Consensus 70 ~i~~~gsgT~a~ea~~~~l-~~~~~~vl~~~~g~~~--~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 141 (388)
T d2ch1a1 70 TMCVSGSAHAGMEAMLSNL-LEEGDRVLIAVNGIWA--ERA-VEMSERYGADVRTIEGPP-DRPFSLETLARAIELH--- 141 (388)
T ss_dssp EEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHH--HHH-HHHHHHTTCEEEEEECCT-TSCCCHHHHHHHHHHH---
T ss_pred EEEEcCcHHHHHHHHHHHh-cccccccccccccccc--ccc-hhhhhhhccccccccccc-ccccchhhhhhhhccC---
Confidence 6778889999999999999 677888664 455554 334 345677899998888874 4456777777766543
Q ss_pred CCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEEEE
Q 006746 270 KKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLF 348 (632)
Q Consensus 270 ~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~ 348 (632)
++++++++|++|.||...|++ +.++||++|++++||++|++|. .++|++++++||+++|.||+++. |.|+|+++
T Consensus 142 --~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~--~pid~~~~~~d~~~~s~~K~~~g-p~G~g~~~ 216 (388)
T d2ch1a1 142 --QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG--VPFYMDKWEIDAVYTGAQKVLGA-PPGITPIS 216 (388)
T ss_dssp --CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCCEEECCCC-CCCC-CSSCEEEE
T ss_pred --Ccceeeeeecccccccccchhhhcchhccccceeeeeeeecccc--cccchhccCceEEEEccccccCC-CCeEEEEe
Confidence 368999999999999999999 9999999999999999999998 69999999999999999997765 99999999
Q ss_pred EeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhh
Q 006746 349 VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR 428 (632)
Q Consensus 349 Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~ 428 (632)
++++.++.+.+...+ ......... .+.... ... .+.++ ..+|+.+..+.++.
T Consensus 217 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~----~~~----------~~~~~------------~~~t~~~~~i~~~~ 268 (388)
T d2ch1a1 217 ISPKALDVIRNRRTK-SKVFYWDLL-LLGNYW----GCY----------DEPKR------------YHHTVASNLIFALR 268 (388)
T ss_dssp ECHHHHHHHHTCSSC-CSCGGGCHH-HHHHHT----TCS----------SSCCC------------CCCCCCHHHHHHHH
T ss_pred ccHHHHHhhhcccCc-cccccccch-hhhhhh----ccc----------ccccc------------cCccchHHHHHHHH
Confidence 999887655443222 110000000 000000 000 00111 13456667777776
Q ss_pred hhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCC-C
Q 006746 429 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR-G 507 (632)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~r-g 507 (632)
.+++.+...|......+.+.+..+++..+... +. .++.+. +..| .
T Consensus 269 ------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~-~~~rs~ 314 (388)
T d2ch1a1 269 ------------------------EALAQIAEEGLENQIKRRIECAQILYEGLGKM------GL---DIFVKD-PRHRLP 314 (388)
T ss_dssp ------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH------TC---CBSSCS-GGGBCT
T ss_pred ------------------------HHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhc------cc---ccccCC-HHHhCC
Confidence 88888888899999999999999888888876 21 122222 2345 4
Q ss_pred cEEEEEEccCCCCccCHHHH-HHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEE
Q 006746 508 PALAFNVFDWKREKIEPVLV-QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV 586 (632)
Q Consensus 508 ~ivaFnv~~~~G~~i~~~~V-~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V 586 (632)
.+++|++++ | ++...+ +.|++++||.++.|..|. ..+++
T Consensus 315 ~v~~~~~p~--g--~~~~~l~~~l~~~~gI~v~~G~~~~------------------------------------~~~~~ 354 (388)
T d2ch1a1 315 TVTGIMIPK--G--VDWWKVSQYAMNNFSLEVQGGLGPT------------------------------------FGKAW 354 (388)
T ss_dssp TEEEEECCT--T--CCHHHHHHHHHHHHCBCCBCCCGGG------------------------------------TTTEE
T ss_pred eEEEEECCC--C--CCHHHHHHHHhhcCCEEEeCCCccc------------------------------------cCCEE
Confidence 688999964 2 676666 556677899999884321 23589
Q ss_pred EEc-cCCCCCHHHHHHHHHHHHHhhhh
Q 006746 587 TAS-LGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 587 RvS-lg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
||| +|++||.|||++|+++|++.|++
T Consensus 355 RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 355 RVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 999 89999999999999999999987
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=1.9e-26 Score=243.11 Aligned_cols=341 Identities=13% Similarity=0.041 Sum_probs=247.9
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCCCCc
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey 190 (632)
||=..|=+.+|+.|++++.+..- | | .+....++++++|+.++++|+++.+
T Consensus 2 ~L~~PGP~~v~~~V~~am~~~~~-----------------------~---h--r~~~f~~i~~~~~~~l~~ll~~~~~-- 51 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALARPQL-----------------------H---H--RTEAAREVFLKARGLLREAFRTEGE-- 51 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCC-----------------------C---T--TSHHHHHHHHHHHHHHHHHHTCSSE--
T ss_pred cccCCCCCCCCHHHHHHhcCCCC-----------------------C---C--CCHHHHHHHHHHHHHHHHHhCCCCC--
Confidence 55556667889999999865210 1 0 1223468999999999999998743
Q ss_pred cEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcC
Q 006746 191 GMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK 269 (632)
Q Consensus 191 ~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~ 269 (632)
.++|++|+|.|++.++.++ +++|++++ +..++++. .| ...+++.|.++..+..+|... ++.+++ .
T Consensus 52 ~i~~~gsgT~a~e~~~~nl-~~~g~~vlv~~~G~f~~--~~-~~~a~~~~~~~~~~~~~~g~~-~~~~~~---------~ 117 (348)
T d1iuga_ 52 VLILTGSGTLAMEALVKNL-FAPGERVLVPVYGKFSE--RF-YEIALEAGLVVERLDYPYGDT-PRPEDV---------A 117 (348)
T ss_dssp EEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHHH--HH-HHHHHHTTCEEEEEECCTTCC-CCTTTS---------C
T ss_pred EEEEeCchHHHHHHHHHhc-ccccccceeecchHHHH--HH-HHHHHhcCcccccccccCCCc-cccccc---------c
Confidence 7999999999999999998 68899854 66777753 33 567899999999998875442 332221 1
Q ss_pred CCceeEEEEeccCCCCccccchH-HHHHHhhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEE
Q 006746 270 KKQRGLFVFPLHSRMTGARYPYL-WMRIAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC 346 (632)
Q Consensus 270 ~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~--g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~ 346 (632)
.+++++++++|.++.||.++|++ |.++||++ +.++++|++|++|. .++|++.|++|++++|+||+++. |+|+|+
T Consensus 118 ~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~--~~i~~d~~~iD~~~~~sqK~l~g-ppG~~~ 194 (348)
T d1iuga_ 118 KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV--GEVALEAMGVDAAASGSQKGLMC-PPGLGF 194 (348)
T ss_dssp CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT--BCCCSGGGTCSEEEEESSSTTCC-CSCEEE
T ss_pred ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccc--cccccccccCCEEEeccccceec-CCceee
Confidence 24578999999999999999999 99999886 47889999999998 69999999999999999997643 889999
Q ss_pred EEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhH
Q 006746 347 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 426 (632)
Q Consensus 347 L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~ 426 (632)
+++|+++++++++..+- . ....++ .. .+.|. .++||+++.|++
T Consensus 195 v~~s~~~le~~~~~~~~--~----dl~~~~-----------------~~--~~~~~------------~~~Tp~v~~i~~ 237 (348)
T d1iuga_ 195 VALSPRALERLKPRGYY--L----DLAREL-----------------KA--QKEGE------------SAWTPAINLVLA 237 (348)
T ss_dssp EEECHHHHHTCCCCSST--T----CHHHHH-----------------HH--HTTTC------------CSSCCCHHHHHH
T ss_pred eeechHHHhhhcccccc--c----chhhhh-----------------hh--hccCc------------ccccccchHHHH
Confidence 99999998888764210 0 000000 00 01222 145788889999
Q ss_pred hhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCC
Q 006746 427 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 506 (632)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~r 506 (632)
|. ++|+.+.+.|.+.+ ++.+....+++..+..+ | ++++ |+ ...
T Consensus 238 l~------------------------~aL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------g---l~~~-~~--~~s 280 (348)
T d1iuga_ 238 VA------------------------AVLEEVLPRLEEHL-ALKAWQNALLYGVGEEG------G---LRPV-PK--RFS 280 (348)
T ss_dssp HH------------------------HHHHHHGGGHHHHH-HHHHHHHHHHHHHHHHT------T---CEES-CS--SBC
T ss_pred HH------------------------HHHHHHHHHHhHHH-HHHHHHHHHHhhhhhhh------h---hccC-hh--hcC
Confidence 98 99998877665544 33344445555555554 3 4444 32 234
Q ss_pred CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEE
Q 006746 507 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV 586 (632)
Q Consensus 507 g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V 586 (632)
..+++|++++ | ++...+.+.++++||.++.|.- ......+
T Consensus 281 ~~v~~~~~P~--g--~~~~~~~~~l~~~gi~i~~G~~------------------------------------~l~~~~~ 320 (348)
T d1iuga_ 281 PAVAAFYLPE--G--VPYARVKEAFAQRGAVIAGGQG------------------------------------PLKGKVF 320 (348)
T ss_dssp TTCEEEECCT--T--CCHHHHHHHHHTTTEECEECCG------------------------------------GGTTTEE
T ss_pred CeEEEEECCC--C--CCHHHHHHHHHHCCeEEEcCcc------------------------------------ccCCCEE
Confidence 4688999865 2 7888888888889999987720 1123489
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 587 TASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 587 RvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
||+.--++|.+||++++++|++.|+.
T Consensus 321 RIg~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 321 RLSLMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp EECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99954478899999999999998864
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.95 E-value=8.6e-28 Score=252.07 Aligned_cols=355 Identities=9% Similarity=-0.046 Sum_probs=229.6
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
.+||..++|-..+|++|++++.+.+... .+.+ .+...-+| . +.+..++++++|+.|+++||+++
T Consensus 2 ~~~~nF~pGP~~~p~~V~~a~~~~~~~~--------~~~~------~~~~~~sH-R-s~~~~~~~~~~r~~l~~l~~~~~ 65 (360)
T d1w23a_ 2 KQVFNFNAGPSALPKPALERAQKELLNF--------NDTQ------MSVMELSH-R-SQSYEEVHEQAQNLLRELLQIPN 65 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSS--------TTSS------SCGGGSCT-T-SHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CceeEeCCCCcCCCHHHHHHHHHHHHhh--------cccC------ccccccCc-C-CHHHHHHHHHHHHHHHHHhCCCC
Confidence 3789899999999999999988744211 0100 00000111 0 12236899999999999999974
Q ss_pred CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcC
Q 006746 188 NDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG 267 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~ 267 (632)
+|.|+|++|+|++...++....+.+++.+++...++. ...| ...+++.|..+......+.. ....+++ ...
T Consensus 66 -~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~- 136 (360)
T d1w23a_ 66 -DYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSW-SEKA-LKEAKLLGETHIAASTKANS-YQSIPDF----SEF- 136 (360)
T ss_dssp -TEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHH-HHHH-HHHHHTTSEEEEEEECGGGT-SCSCCCG----GGC-
T ss_pred -CCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccch-hhhh-HHHHHHhhhcceeecccccc-ccchhhh----hhc-
Confidence 6789999999999988888776777777765444332 2333 34567788777777654322 1222222 221
Q ss_pred cCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEE
Q 006746 268 KKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC 346 (632)
Q Consensus 268 ~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~ 346 (632)
.+.+.+.|++|.||...|++ |.++||++|++++|||+|++|+ .++|+++|++||++++.||+++ | |.|+
T Consensus 137 -----~~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~--~~id~~~~~vd~~~~~~~k~~~--~-~~~~ 206 (360)
T d1w23a_ 137 -----QLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILS--RPLKVNQFGMIYAGAQKNLGPS--G-VTVV 206 (360)
T ss_dssp -----CCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTS--SCCCGGGCSEEEEETTTTTSCT--T-CEEE
T ss_pred -----ccccccceeEecCCccccceeeeeccccceeeEEeeccccccc--cccccccccceEEeeccccccC--C-ccee
Confidence 23445779999999999999 9999999999999999999999 6999999999999999888655 3 7777
Q ss_pred EEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhH
Q 006746 347 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 426 (632)
Q Consensus 347 L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~ 426 (632)
++.++...+...+...++. |. ...+ ...+ ..++..+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~----------~~----------------~~~~-~~~~-------------~~~~~~~~~~~ 246 (360)
T d1w23a_ 207 IVKKDLLNTKVEQVPTMLQ----------YA----------------THIK-SDSL-------------YNTPPTFSIYM 246 (360)
T ss_dssp EEEHHHHCSCCTTCCGGGC----------HH----------------HHHH-TTTC-------------SSCCCHHHHHH
T ss_pred eEechhhhcccccCCcchh----------hh----------------hhhh-hhhh-------------cccccceeeec
Confidence 7777655433322111100 00 0000 0000 01111222222
Q ss_pred hhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCC
Q 006746 427 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 505 (632)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~-~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~ 505 (632)
.. .++....+ .+...+.++.+.....+........ ....+... +..
T Consensus 247 ~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~ 293 (360)
T d1w23a_ 247 LR------------------------NVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN--------GFYVGHAE-KGS 293 (360)
T ss_dssp HH------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT--------TSSEESSC-GGG
T ss_pred hh------------------------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcc--------cccccCCC-hhh
Confidence 22 23333333 3456666666666666666655541 12222322 234
Q ss_pred C-CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCc
Q 006746 506 R-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 584 (632)
Q Consensus 506 r-g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 584 (632)
| .++++|++.+. +..+.+.++++++||.++.|..|. |
T Consensus 294 rS~~vvsf~i~~~----~~~~~~~~~l~~~GI~~~~G~~~~--------------------------------------g 331 (360)
T d1w23a_ 294 RSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNGHRSV--------------------------------------G 331 (360)
T ss_dssp BCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBCCTTT--------------------------------------C
T ss_pred cceeEEEEEcCCC----ccHHHHHHHHHHCCCeeeeCCCcc--------------------------------------C
Confidence 4 46899999762 456677788889999998874321 3
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 585 VVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 585 ~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.||||+..++|.|||++|++++++|...
T Consensus 332 giRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 332 GCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 5999998888999999999999999753
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.5e-26 Score=241.20 Aligned_cols=351 Identities=10% Similarity=-0.059 Sum_probs=231.6
Q ss_pred EeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccc--c-ccchhHHHHHHHHHHHHHcCCCC
Q 006746 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL--H-GGQESGLESAMKKRIMDFLNISE 187 (632)
Q Consensus 111 yLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~--~-g~~~~~~~~~~R~~ia~~l~a~~ 187 (632)
|-=+.|-..+|+.|++++.+.+.. |+. .+ .+.+. + +....++++++|+.|+++||+++
T Consensus 3 ~nF~pGP~~~p~~Vl~a~~~~~~~--------~~~----------~~-~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~ 63 (360)
T d1bjna_ 3 FNFSSGPAMLPAEVLKQAQQELRD--------WNG----------LG-TSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPS 63 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSS--------GGG----------SS-SCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT
T ss_pred EEeCCCCcCCCHHHHHHHHHHHhh--------hcc----------cC-ccccccCcCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 333456667899999999875431 111 11 11111 1 12236889999999999999974
Q ss_pred CCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcC
Q 006746 188 NDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG 267 (632)
Q Consensus 188 ~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~ 267 (632)
++.|+|++|+|++.+.++-..-+.+++.+++...++. .. +....+++.|..+...... .....+.+++.+.+.
T Consensus 64 -~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 136 (360)
T d1bjna_ 64 -NYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW-AA-SAIKEAKKYCTPNVFDAKV-TVDGLRAVKPMREWQ--- 136 (360)
T ss_dssp -TEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHH-HH-HHHHHHTTTSEEEEEECEE-EETTEEEECCGGGCC---
T ss_pred -CCEEEEECCchHHHHhhhhhcccccccccceecccch-hh-hhHHHHhhcCccceeeccc-cCCCcchhhhhhhhc---
Confidence 6789999999888887776554556666655544442 34 4456778888877777654 333334333333333
Q ss_pred cCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCceEE
Q 006746 268 KKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC 346 (632)
Q Consensus 268 ~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~ 346 (632)
.+++++++.|.+|.||...|+. +. ++.+++.+++|++++++. .++| .+++|++++|+||++|. |.|.|+
T Consensus 137 ---~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~--~~vd--~~~~dv~~~ss~k~~~~-~~~~~~ 206 (360)
T d1bjna_ 137 ---LSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILS--RPID--VSRYGVIYAGAQKNIGP-AGLTIV 206 (360)
T ss_dssp ---CCSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTS--SCCC--GGGCSEEEEETTTTTSS-TTCEEE
T ss_pred ---cCCceeEEEecccccccCcccccee--cccccceeeeeeeccccc--eeee--eccceeEEEEccccccc-CCCcee
Confidence 3458899999999999999998 64 567789999999999886 3555 46789999999998775 788999
Q ss_pred EEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhH
Q 006746 347 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 426 (632)
Q Consensus 347 L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~ 426 (632)
+++++............ ..+|... .. ... ..++..+.+..
T Consensus 207 ~~~~~~~~~~~~~~~~~---------~~~~~~~--------------~~----~~~-------------~~~~~~~~~~~ 246 (360)
T d1bjna_ 207 IVREDLLGKANIACPSI---------LDYSILN--------------DN----GSM-------------FNTPPTFAWYL 246 (360)
T ss_dssp EEEGGGCSCCCTTSCGG---------GCHHHHH--------------HT----TTC-------------SSCCCHHHHHH
T ss_pred EeeehhhhhccccCCcc---------hhhHHHH--------------hh----hhh-------------ccccccchHHH
Confidence 99888765433222111 0011000 00 000 00111111111
Q ss_pred hhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCC
Q 006746 427 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 506 (632)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~r 506 (632)
+. ..++......+++.+.++.+.+..++...+..+ .. .++.+.....+
T Consensus 247 ~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~rs 294 (360)
T d1bjna_ 247 SG-----------------------LVFKWLKANGGVAEMDKINQQKAELLYGVIDNS--------DF-YRNDVAKRNRS 294 (360)
T ss_dssp HH-----------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC--------SS-EECCBCGGGBC
T ss_pred HH-----------------------HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcc--------cc-ccccCCccccc
Confidence 11 144555555567888888888888888777766 22 33444333445
Q ss_pred CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEE
Q 006746 507 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV 586 (632)
Q Consensus 507 g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V 586 (632)
.++++|++++. ++++.+.++++++||.++.|+. ..|.|
T Consensus 295 ~~v~~f~~~~~----~~~~~~~~~l~~~Gi~~~~G~~--------------------------------------~~g~~ 332 (360)
T d1bjna_ 295 RMNVPFQLADS----ALDKLFLEESFAAGLHALKGHR--------------------------------------VVGGM 332 (360)
T ss_dssp SSEEEEEESSG----GGHHHHHHHHHHTTEECCBCCT--------------------------------------TTCSE
T ss_pred ceEEEEEcCCc----ccHHHHHHHHHHCCCEeecCCC--------------------------------------ccCeE
Confidence 68899999752 6788888889999999987721 12459
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 587 TASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 587 RvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
|||++.++|.|||++|+++|++|.+
T Consensus 333 Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 333 RASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.93 E-value=4.8e-25 Score=231.90 Aligned_cols=351 Identities=11% Similarity=0.032 Sum_probs=224.9
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccccccccc---ccchhHHHHHHHHHHHHHcCC
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLH---GGQESGLESAMKKRIMDFLNI 185 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~---g~~~~~~~~~~R~~ia~~l~a 185 (632)
+.|.=..|-..+|..|++++.+.+... .+ +..+.+.. +....++++++|+.|+++||+
T Consensus 3 ~~~~F~pGP~~vp~~V~eam~~~~~~~--------~~-----------~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~ 63 (361)
T d2c0ra1 3 RAYNFNAGPAALPLEVLERAQAEFVDY--------QH-----------TGMSIMEMSHRGAVYEAVHNEAQARLLALLGN 63 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSS--------TT-----------SSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcccCCCCcCCCHHHHHHHHHHHhhh--------cc-----------cCccccccCcCCHHHHHHHHHHHHHHHHHhCC
Confidence 445224566688999999998754211 01 11111111 122478999999999999999
Q ss_pred CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 186 SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
+ ++|+|+|+++++++...++-..-+.++++++... +.+....| ...+++.|..+..+..++ ...++.+++++.+..
T Consensus 64 ~-~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~-~g~~~~~~-~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 139 (361)
T d2c0ra1 64 P-TGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVM-TGSWASKA-LKEAKLIGDTHVAASSEA-SNYMTLPKLQEIQLQ 139 (361)
T ss_dssp C-SSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEE-CSHHHHHH-HHHHHHHSCEEEEEECGG-GTTCSCCCGGGCCCC
T ss_pred C-CCCEEEEECCCchHHHHHHHhccccCCCceEEEe-echhhhhh-hhhhhhcCceeeeecccc-ccccchhhhhhhccc
Confidence 7 4689999998877665554444367787765433 22223444 677899999999998874 334566665544332
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccccCCCCCce
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF 344 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~ 344 (632)
+ .+.+++|.||...|+. +.++|+++|++++|||+|++|+ .++|++++++| +++++|.+|. |.|.
T Consensus 140 ~----------~~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~--~~id~~~~di~--~~s~~k~~~~-~~~~ 204 (361)
T d2c0ra1 140 D----------NAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILS--RPFDLNQFGLV--YAGAQKNLGP-SGVT 204 (361)
T ss_dssp T----------TEEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTS--SCCCGGGCSEE--EEETTTTTCC-SSCE
T ss_pred C----------cceEEEEecccceecceEEEeeccCCceEEEEeeccccc--cccccccceeE--EEeccccccc-ccCc
Confidence 2 2456788999999999 9999999999999999999998 69999876555 5678998884 5455
Q ss_pred EEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchh
Q 006746 345 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI 424 (632)
Q Consensus 345 G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i 424 (632)
|+.++++.... ..+.... ...++... +...+. .++..+.+
T Consensus 205 ~~~~~~~~~~~-~~~~~~~--------~~~~~~~~------------------~~~~~~-------------~~~~~~~~ 244 (361)
T d2c0ra1 205 VVIVREDLVAE-SPKHLPT--------MLRYDTYV------------------KNNSLY-------------NTPPSFGI 244 (361)
T ss_dssp EEEEEGGGSSS-CCTTSCG--------GGCHHHHH------------------HTTTCS-------------SCCCHHHH
T ss_pred EEEEEhHHhhh-Ccccccc--------cccccccc------------------cccccc-------------ccccceee
Confidence 55554444432 2221110 00011000 011111 11112222
Q ss_pred hHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCC
Q 006746 425 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 503 (632)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~-~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~ 503 (632)
..+. .++..... .+...+..|.+.....+........ ....++.++
T Consensus 245 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-- 291 (361)
T d2c0ra1 245 YMVN------------------------EVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG-------GFYRGCVDV-- 291 (361)
T ss_dssp HHHH------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST-------TSSEESSCG--
T ss_pred ehhh------------------------hHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcc-------cccccCCCh--
Confidence 2222 33333333 3456677777777777777776652 333344443
Q ss_pred CCC-CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCC
Q 006746 504 FDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 582 (632)
Q Consensus 504 ~~r-g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 582 (632)
..| ..+++|++.+ | ++++.+.+.++++||.++.|.- .
T Consensus 292 ~~rS~~~~~~~~~~--~--~~~~~~~~~L~~~GI~~~~G~~--------------------------------------~ 329 (361)
T d2c0ra1 292 DSRSDMNITFRLAS--E--ELEKEFVKASEQEGFVGLKGHR--------------------------------------S 329 (361)
T ss_dssp GGBCSSEEEEECSC--H--HHHHHHHHHHHHTTEESCBCCT--------------------------------------T
T ss_pred hhccceEEEEECCC--c--ccHHHHHHHHHHCCCEEecCCC--------------------------------------c
Confidence 344 4678898875 2 6788999999999999988731 1
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 583 ITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 583 ~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+.+|||+..++|.|||++|+++|++|...
T Consensus 330 ~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 330 VGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 235999999999999999999999998653
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=1.7e-23 Score=218.94 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.+.+..++++|+++|++ +++||+|+|+|+.+++.++ .++||+|+++ .+|++. . ..++..|++++.+|.+
T Consensus 47 ~l~~~~~~~~A~~~g~e----~~~~t~g~t~a~~~~~~al-~~~gd~Vi~~~~~h~s~-~----~~~~~~g~~v~~v~~~ 116 (364)
T d2e7ja1 47 PIHDFIHNQLPKFLGCD----VARVTNGAREAKFAVMHSL-AKKDAWVVMDENCHYSS-Y----VAAERAGLNIALVPKT 116 (364)
T ss_dssp CHHHHHHTHHHHHTTSS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHH-H----HHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHhCcC----EEEEECcHHHHHHHHHHHH-hCCCcEEEeeccccccc-c----hHHHhccceEEEeeec
Confidence 46788999999999985 5889999999999999999 6899998765 466652 2 2356789999999985
Q ss_pred -CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 249 -WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 249 -~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
.+++.+++++++++|+++++ ...+.|+++++.+|+||...|++ |+++|+++|+++++|++|++|+ .++++..+++
T Consensus 117 ~~~~~~i~~~~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~--~~~~~~~~g~ 193 (364)
T d2e7ja1 117 DYPDYAITPENFAQTIEETKK-RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGA 193 (364)
T ss_dssp CTTTCCCCHHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTC
T ss_pred cccccccCHHHHHhhhhhhcc-cCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhh--hhhccccccc
Confidence 35678999999999988653 34678999999999999999999 9999999999999999999987 5888888999
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
|++++|+||+||. |.|.|+++++++.++.+
T Consensus 194 D~~~~S~~K~~~~-~g~~g~l~~~~~~~~~~ 223 (364)
T d2e7ja1 194 DFIVGSGHKSMAA-SGPIGVMGMKEEWAEIV 223 (364)
T ss_dssp SEEEEEHHHHSSC-CSSCEEEEECTTTTTTT
T ss_pred ceeeeccccccCC-CCCEEEEEECHHHHHHH
Confidence 9999999998885 77899999999877654
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.3e-23 Score=224.43 Aligned_cols=328 Identities=12% Similarity=0.007 Sum_probs=234.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCc---cEEEeCCHHHHHHHHHhhCCC----------CCCCe-EEEeccccchhhHHHHH
Q 006746 168 ESGLESAMKKRIMDFLNISENDY---GMVFTANRTSAFKLLAESYPF----------MSVKN-LLTVYDYESEAVEAMIR 233 (632)
Q Consensus 168 ~~~~~~~~R~~ia~~l~a~~~ey---~vvft~naT~al~lv~~sl~~----------~~gd~-ilt~~d~~s~~v~~~~~ 233 (632)
..++..++...+++++|++.... .=+||+++|+|+-+.+.+..+ ...+. ++++...|. .| ..
T Consensus 91 ~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~---s~-~K 166 (450)
T d1pmma_ 91 SAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQI---CW-HK 166 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCH---HH-HH
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHH---HH-HH
Confidence 35788999999999999975321 248999999999887655421 12232 444444443 23 56
Q ss_pred HHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHH------HhhCCcEEEE
Q 006746 234 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRI------AQENDWHILI 306 (632)
Q Consensus 234 ~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~------a~~~g~~vlv 306 (632)
.|+..|++++.++++..++.+|+++|+++++++| .+|+.++.++.||..-|++ |.++ |+++|++++|
T Consensus 167 aa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t------~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHV 240 (450)
T d1pmma_ 167 FARYWDVELREIPMRPGQLFMDPKRMIEACDENT------IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 240 (450)
T ss_dssp HHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTE------EEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHcCCCceEeeecCCCCcCcHHHHHHHhhhCc------eEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEe
Confidence 7888999999999986679999999999998754 8999999999999999998 7766 4668999999
Q ss_pred eccccCCCC-----CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeeccccccccccccc
Q 006746 307 DACALGPKD-----MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEF 381 (632)
Q Consensus 307 Daaq~~g~~-----m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~ 381 (632)
|||+.++.- -..++....++|.+++|+||+++. |.|+|++++|+... +...... .. .|...+
T Consensus 241 DAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~-p~g~g~l~~r~~~~--~~~~~~~-~~--------~yl~~~- 307 (450)
T d1pmma_ 241 DAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGCGWVIWRDEEA--LPQELVF-NV--------DYLGGQ- 307 (450)
T ss_dssp ECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSGGG--SCGGGCE-EE--------EETTEE-
T ss_pred ehhhccceeeeechhhhhhhcccceeEeecChhhccCC-CCCeeEEEecChhh--hhhhccc-cc--------CcCCCC-
Confidence 999876431 023445556899999999997775 99999999998653 2211110 00 010000
Q ss_pred CCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh
Q 006746 382 SSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL 461 (632)
Q Consensus 382 ~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~ 461 (632)
. ...+.+++ .....+.++- ..+..+-..
T Consensus 308 ----~------------~~~~~~~s------------r~~~~~~~~~------------------------~~l~~~G~~ 335 (450)
T d1pmma_ 308 ----I------------GTFAINFS------------RPAGQVIAQY------------------------YEFLRLGRE 335 (450)
T ss_dssp ----E------------EECCSCCS------------CBSHHHHHHH------------------------HHHHHHHHH
T ss_pred ----c------------CCCcccCc------------cchHHHHHHH------------------------HHHhhhhHH
Confidence 0 00111111 1111122221 566667777
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccC
Q 006746 462 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG 541 (632)
Q Consensus 462 Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G 541 (632)
|+..+.++...|+++|.+.|.++ +.++|++|..+..+.++|+|.+.+.....++...|.+.+.++|..|.+.
T Consensus 336 G~~~~~~~~~~la~~l~~~L~~~--------~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~ 407 (450)
T d1pmma_ 336 GYTKVQNASYQVAAYLADEIAKL--------GPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF 407 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--------SCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeecc
Confidence 99999999999999999999998 6689998765566789999999886655678888888888888766421
Q ss_pred ccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 006746 542 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 542 ~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~ 611 (632)
.+ + . ......++|+++...+|.++|++|++-|++.++
T Consensus 408 ~~--p-------------------------~------~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~ 444 (450)
T d1pmma_ 408 TL--G-------------------------G------EATDIVVMRIMCRRGFEMDFAELLLEDYKASLK 444 (450)
T ss_dssp EC--C-------------------------T------TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred Cc--C-------------------------C------CcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 00 0 0 112356899999999999999999999987654
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.83 E-value=1.2e-19 Score=196.99 Aligned_cols=241 Identities=11% Similarity=-0.040 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHH-HhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLL-AESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv-~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
...+.++++++|++||++ ..+|+.|+|++.+++ +.++ .++||+|+++ ..|.| .+..... +...+..+..++
T Consensus 65 ~~~i~eae~~~A~~~ga~----~a~f~~~Gtt~~n~a~i~a~-~~~gd~Vi~~~~~H~S-v~~~~~~-l~~~~~~~~~~~ 137 (462)
T d1c4ka2 65 EGPAVAAEKHAARVYNAD----KTYFVLGGSSNANNTVTSAL-VSNGDLVLFDRNNHKS-VYNSALA-MAGGRPVYLQTN 137 (462)
T ss_dssp BTHHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHHH-CCTTCEEEEETTCCHH-HHHHHTT-TTCCEEEEECEE
T ss_pred CHHHHHHHHHHHHHhCCC----eEEEECCchHHHHHHHHHHh-cCCCCeEEecccchHH-HHHHHHH-HhcCCceeeecc
Confidence 356789999999999995 467777777666655 4544 7899998765 46665 3332221 222333444444
Q ss_pred ccCCcc--------ccCHHHHHHHHHhcC---cCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC
Q 006746 247 FSWPRL--------RINSEKLRKMVVSKG---KKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK 314 (632)
Q Consensus 247 ~~~~~~--------~i~~~~l~~~i~~~~---~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~ 314 (632)
++ +.+ .++.+.+++.+.... ....++.++++.++++..|...|++ |+++||++|++++||+||.++.
T Consensus 138 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~ 216 (462)
T d1c4ka2 138 RN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 216 (462)
T ss_dssp EC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred cc-cccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccc
Confidence 44 222 344455544432211 1123567888899999999999999 9999999999999999998764
Q ss_pred CCCC---CCC--------CCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccC
Q 006746 315 DMDS---FGL--------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFS 382 (632)
Q Consensus 315 ~m~~---ldl--------s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~ 382 (632)
...+ ... ...++|++++|+||++|. |+|.+++.+++..+.... .+.+ +.+.
T Consensus 217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~-~~~g~ll~~~~~~~~~~~-~~~~~~~~~--------------- 279 (462)
T d1c4ka2 217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQL-RYCDHKHFN--------------- 279 (462)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTST-TCCCHHHHH---------------
T ss_pred cccCcCCcchhhccccccccCCccEEEEecCccccc-ccceEEEEeccccccccc-hhhhHHHHH---------------
Confidence 1111 111 123569999999999994 666666666665543221 1111 0000
Q ss_pred CCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhC
Q 006746 383 SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG 462 (632)
Q Consensus 383 ~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~G 462 (632)
..+. ..+.+.++.+.+.++. .|+.++...+
T Consensus 280 ----------~~~~----------------~~~t~sp~~~~~asl~------------------------~a~~~~~~~~ 309 (462)
T d1c4ka2 280 ----------NSFN----------------LFMSTSPFYPMYAALD------------------------VNAAMQEGEA 309 (462)
T ss_dssp ----------HHHH----------------HHSCSSCCHHHHHHHH------------------------HHHHHHSHHH
T ss_pred ----------Hhhh----------------hcccCCchHHHHHHHH------------------------HHHHHHHhhH
Confidence 0000 0123445555666665 6676666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc
Q 006746 463 LTMISRRGRCLINWLVNALMKL 484 (632)
Q Consensus 463 l~~I~~r~~~L~~~L~~~L~~l 484 (632)
...+.++...++.++++++.++
T Consensus 310 g~~l~~~~~~~a~~~r~~l~~~ 331 (462)
T d1c4ka2 310 GRKLWHDLLITTIEARKKLIKA 331 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888889999999999987
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=1.8e-18 Score=188.78 Aligned_cols=367 Identities=12% Similarity=0.022 Sum_probs=229.8
Q ss_pred CceEeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCCC
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~-~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~ 186 (632)
..-|+.|--.+..+.+++-.+.. .++. |.... ..+-....+..++-+.++++||.+
T Consensus 73 ~P~f~~~~~~~~~~~~~l~~~~~~~~n~----------------------n~~~~-~~sp~~t~iE~~v~~wl~~l~g~p 129 (476)
T d1js3a_ 73 SPYFFAYFPTASSYPAMLADMLCGAIGC----------------------IGFSW-AASPACTELETVMMDWLGKMLQLP 129 (476)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHHCC----------------------CCSSG-GGCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCeeEeCCCCCCHHHHHHHHHHHhhcc----------------------cccch-hhhhhHHHHHHHHHHHHHHHhCCC
Confidence 34688888888888887776432 1111 11110 012224678888999999999997
Q ss_pred CC-------CccEEEeCCHHHHHHHHHhhC-----C--------CCCC---Ce-E-EEec-cccchhhHHHHHHHHhcCC
Q 006746 187 EN-------DYGMVFTANRTSAFKLLAESY-----P--------FMSV---KN-L-LTVY-DYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 187 ~~-------ey~vvft~naT~al~lv~~sl-----~--------~~~g---d~-i-lt~~-d~~s~~v~~~~~~a~~~G~ 240 (632)
.+ +-.-+||+++|+|.-+.+..- + +..+ .+ + +.+. .|.| +...+.-.|.
T Consensus 130 ~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S-----i~ka~~~lGl 204 (476)
T d1js3a_ 130 EAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS-----VERAGLIGGV 204 (476)
T ss_dssp GGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH-----HHHHHHHHTC
T ss_pred cccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH-----HHHHHHhcCc
Confidence 42 224689999999877654221 1 1111 12 3 3333 3443 2345566799
Q ss_pred EEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC----
Q 006746 241 RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD---- 315 (632)
Q Consensus 241 ~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~---- 315 (632)
.++.+|.+ +++++|+++|+++|++.++....+-+|+.++-++.||..-|++ |.++|+++|++++||||..+..-
T Consensus 205 ~~~~v~~d-~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~ 283 (476)
T d1js3a_ 205 KLKAIPSD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPE 283 (476)
T ss_dssp EEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTT
T ss_pred eEEEeccC-CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcc
Confidence 99999998 7889999999999987654455678899999999999999999 99999999999999998655321
Q ss_pred CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 316 MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 316 m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
...+--....+|.+++++|||++. |.+.|++++|+... +......+.... ... ..+. ... ..+
T Consensus 284 ~~~~~~gi~~aDSit~d~HK~l~~-P~~~g~~l~r~~~~--~~~~~~~~~~~~--~~~-----~~~~--~~~-----~~~ 346 (476)
T d1js3a_ 284 FRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRRTD--LTGAFKLDPVYL--KHS-----HQGS--GLI-----TDY 346 (476)
T ss_dssp TGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCHHH--HHGGGC-------------------C--CSC-----CCG
T ss_pred hhhhhcCCcccceeeecCcccccc-CCcceeecccchHH--HHHHHhcChhhh--ccc-----cccc--ccc-----ccc
Confidence 001100113689999999998886 99999999997532 111110000000 000 0000 000 000
Q ss_pred hhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 475 (632)
Q Consensus 396 ~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~ 475 (632)
.+.|.. ++...-.+..+ .+++.+-..|+..+.++...|++
T Consensus 347 ---~~~~~~------------~sr~~~al~lw-------------------------~~l~~~G~~g~~~~i~~~~~lA~ 386 (476)
T d1js3a_ 347 ---RHWQLP------------LGRRFRSLKMW-------------------------FVFRMYGVKGLQAYIRKHVQLSH 386 (476)
T ss_dssp ---GGSSSC------------SCCCCTHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccc------------cchhhHHHHHH-------------------------HHHHHHhHhHHHHHHHHHHHHHH
Confidence 000100 11111111112 46666667789999999999999
Q ss_pred HHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 476 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 476 ~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
++.+.|.+. |.++++.|. ..++|+|++.+.+. +...+.+++.++-.+.+ .+
T Consensus 387 ~l~~~l~~~--------~~fel~~~p----~l~iV~Fr~~~~d~--~n~~l~~~l~~~G~~~~------s~--------- 437 (476)
T d1js3a_ 387 EFEAFVLQD--------PRFEVCAEV----TLGLVCFRLKGSDG--LNEALLERINSARKIHL------VP--------- 437 (476)
T ss_dssp HHHHHHHHC--------TTEEECSCC----CSSEEEEEESSCHH--HHHHHHHHHHHHTSCBC------EE---------
T ss_pred HHHHHHhcC--------CCeEEECCC----ceEEEEEEccCChH--HHHHHHHHHHhcCCEEE------ee---------
Confidence 999999987 779998774 56899999876321 22333344333211211 11
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccC-CCCCHHHHHHHHHHHHHhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg-~~~t~eDV~rlv~~l~~~l~ 611 (632)
. ...+..++|++++ +.+|.+||+.+|+.|++..+
T Consensus 438 -------------t---------~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~ 472 (476)
T d1js3a_ 438 -------------C---------RLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA 472 (476)
T ss_dssp -------------E---------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -------------e---------eECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 0 0012358999986 88999999999999998754
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=4.8e-18 Score=178.48 Aligned_cols=340 Identities=10% Similarity=0.021 Sum_probs=205.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+..+++..+++++++|++ .+++|+|+|+|+.+++.++.+++||+|+ ..+.|++ ... .....|++++.+++
T Consensus 30 G~~v~~~E~~la~~~g~~----~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~-~~~----ai~~~g~~pv~~d~ 100 (376)
T d1mdoa_ 30 GPKNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVS-TLN----MIVLLGANPVMVDV 100 (376)
T ss_dssp SHHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH-HHH----HHHHTTCEEEEECB
T ss_pred CHHHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccc-ccc----chhccccceeeecc
Confidence 356788999999999985 4788999999999999999999999976 5677876 222 23567999999999
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+..++.+++++|+++|+++| ++++++| ..|...|++ |.++|+++|+.++.|+||+.|.......+..+
T Consensus 101 ~~~~~~~d~~~l~~~i~~~t------kaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~-- 169 (376)
T d1mdoa_ 101 DRDTLMVTPEHIEAAITPQT------KAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGAR-- 169 (376)
T ss_dssp CTTTCCBCHHHHHHHCCTTE------EEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSS--
T ss_pred cccccCCCHHHHHHhcCCCC------eEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccc--
Confidence 87788899999999998654 7777766 589999999 99999999999999999999853222222233
Q ss_pred cEEEEcc--ccccCCCCCceEEEEEeCCCc-cccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcccc
Q 006746 327 DFLICSF--YQIFGENPSGFGCLFVKKSTV-PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 403 (632)
Q Consensus 327 Df~~~S~--hK~~G~~P~G~G~L~Vr~~~~-~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~ 403 (632)
|+.++|| +|.++. + +-|+++.++..+ ++++.....|...........+.. ..+.....|..
T Consensus 170 g~~~~Sf~~~K~l~~-g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~~g~n 233 (376)
T d1mdoa_ 170 GTAIFSFHAIKNITC-A-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRA--------------PQAEVLAPGYK 233 (376)
T ss_dssp SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHTBTTEECC-------------------------CCEESSCCCB
T ss_pred cCccccCCCcCCCCC-C-CCCEEEEechhHHHHHHhhcccCCccccccccccccc--------------ccccchhcccc
Confidence 4455555 487773 3 446777666543 333332211221100000000000 00000001110
Q ss_pred CCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Q 006746 404 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK 483 (632)
Q Consensus 404 ~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~ 483 (632)
....++. +++-..+-..++.+.+|.+.+.+++.+.|.+
T Consensus 234 ---------------~~~~~~~---------------------------Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~ 271 (376)
T d1mdoa_ 234 ---------------YNLPDLN---------------------------AAIALAQLQKLDALNARRAAIAAQYHQAMAD 271 (376)
T ss_dssp ---------------CCCCHHH---------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------cccchhh---------------------------hhhhhhhhhhhhHHHHHHhhhhhhhhhhccc
Confidence 1111122 2232222235788889999999999999998
Q ss_pred cCCCCCCCCCcEEEECCCCCCCC-CcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhh
Q 006746 484 LQHPNTEGNALVKIYGPKIRFDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK 562 (632)
Q Consensus 484 l~h~~~~G~p~v~Iygp~~~~~r-g~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~ 562 (632)
+ +.+.+..+...... -....+.+... -...+...+.+.+.++||.++..+.... ...+... ....
T Consensus 272 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Rd~l~~~L~~~gI~~~~~y~~~~--~~~~~~~---~~~~ 337 (376)
T d1mdoa_ 272 L--------PFQPLSLPSWEHIHAWHLFIIRVDEA-RCGITRDALMASLKTKGIGTGLHFRAAH--TQKYYRE---RFPT 337 (376)
T ss_dssp S--------SCEECCCCSSCEECCCSCEEEECCHH-HHSSCHHHHHHHHHHTTBCCBCCCCCGG--GSHHHHH---HSTT
T ss_pred c--------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHCCCCeeeECcchh--cCHHHHh---hCCC
Confidence 7 44544433211111 12222222210 0113456677777889999886542211 1111000 0000
Q ss_pred hhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 563 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
. .|- + ........|.+-+|+.-|.+||+++++.|++|+
T Consensus 338 ~-~~p-----~----a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 338 L-TLP-----D----TEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp C-CCH-----H----HHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred C-CCH-----H----HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0 000 0 001123478888899999999999999999985
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.76 E-value=7.7e-18 Score=180.98 Aligned_cols=311 Identities=10% Similarity=0.033 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeC-CHHHHHHHHHhhCC-CCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTA-NRTSAFKLLAESYP-FMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~-naT~al~lv~~sl~-~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
.+..+.-..+++++|.+.. ..++. ++++++.++..++. ..++++|+++ ..|+| .. ..++..|++++.++
T Consensus 113 ~~~~~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s-~~----k~~~~~g~~~~~v~ 184 (434)
T d2z67a1 113 ALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS-PI----KAVSFVGMNMRLVE 184 (434)
T ss_dssp HHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HH----HHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHH-HH----HHHHHhCCcceEEE
Confidence 4445566678889998743 44444 44455555555442 2356777655 45654 23 33456788888886
Q ss_pred c--cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC---CCCC
Q 006746 247 F--SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM---DSFG 320 (632)
Q Consensus 247 ~--~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m---~~ld 320 (632)
. +..++.+|+++|+++|++.+. .+++.+|+++..++.+|...|++ |+++|+++|++++||+|+.++... .+..
T Consensus 185 ~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~ 263 (434)
T d2z67a1 185 TVLDGDRVYVPVEDIENAIKKEIE-LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKK 263 (434)
T ss_dssp CEEETTEEECCHHHHHHHHHHHHH-TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHH
T ss_pred eecCCCccCCCHHHHHHHHHhhhh-cCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccc
Confidence 4 335678999999999986421 12456888899999999999999 999999999999999998654200 0111
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCc-cccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV-PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~-~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
.-..++|++++|+||++|. |.|.|+++++++.. +.+...+.+
T Consensus 264 ~~~~~~D~~~~s~hK~l~~-~~g~~~~~~~~~~~~~~~~~~~~~------------------------------------ 306 (434)
T d2z67a1 264 AFKYRVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPG------------------------------------ 306 (434)
T ss_dssp HHTSCCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCS------------------------------------
T ss_pred cccCCcceEEEcCcccccc-CCCccccccCcHHHHHHHHhhccc------------------------------------
Confidence 2345889999999997775 89999999987532 222221111
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
+.+ ..+....+ .++..+...|+..+.++...+++|+.+
T Consensus 307 --~~~---------------~~~~~~~~-------------------------a~l~~~~~~g~~~~~~~~~~~a~~l~~ 344 (434)
T d2z67a1 307 --RAS---------------ATPVVNTL-------------------------VSLLSMGSKNYLELVKNQKNSKKLLDE 344 (434)
T ss_dssp --CBC---------------SHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccc---------------cchHHHHH-------------------------HHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 000 00011111 456666667888889999999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
.|+++.... | .+++.+ ..++..+...+ .++..+...+.+.||..+ .|........
T Consensus 345 ~L~~l~~~~--g---~~ll~~-----~~~~~~~~~~~-----~~~~~l~~~L~~~gI~g~---~v~~~l~~~g------- 399 (434)
T d2z67a1 345 LLNDLSKKT--G---GKFLDV-----ESPIASCISVN-----SDPVEIAAKLYNLRVTGP---RGIKKTDHFG------- 399 (434)
T ss_dssp HHHHHHHHS--S---CCBCCC-----CCSSEEEEECS-----SCHHHHHHHHHHTTEESC---EEECTTCHHH-------
T ss_pred HHHHhhhhc--C---ceecCC-----CCCceeeeecC-----CCHHHHHHHHHHcCCeee---ehhhhccccC-------
Confidence 998872211 2 222222 22333333334 577778777777898532 2222111110
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~ 608 (632)
. +. ........+|++++.++|.||||+|++.|++
T Consensus 400 ----~-~~----------~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 400 ----N-CY----------LGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp ----H-TC----------SSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred ----e-ee----------ecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 0 00 0122346899999999999999999999986
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=9.7e-18 Score=180.55 Aligned_cols=333 Identities=10% Similarity=0.029 Sum_probs=204.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHH-hhCC--CCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLA-ESYP--FMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~-~sl~--~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
..+..++.+.+++++|.++.. ..++|+++|++..+++ .+.. ..++++|+++. .|.| .. ..+...|++.+.
T Consensus 93 ~~le~~~~~~~~~l~g~~~~~-~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s-~~----~a~~~~g~~~~~ 166 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSVA-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS-CF----KSMVTAGFEPVV 166 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHH-HH----HHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCccc-CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHH-HH----HHHHHcCCeeEE
Confidence 356667778899999998643 5778888776544433 3321 23456677665 5554 22 334567999888
Q ss_pred Eec--cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCC----CC
Q 006746 245 AEF--SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD----MD 317 (632)
Q Consensus 245 v~~--~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~----m~ 317 (632)
|.. +..++.+|+++|+++|.+.. ..++.+|++++.++.+|...|++ |+++|+++|+++++|+|+.++.. ..
T Consensus 167 v~~~~~~~~~~id~~~l~~~i~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~ 244 (445)
T d3bc8a1 167 IENVLEGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLI 244 (445)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH
T ss_pred EEeeccCcccccCHHHHHHHHHhcc--ccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccc
Confidence 853 23678899999999998643 23578999999999999999999 99999999999999999876531 01
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCc-cccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV-PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~-~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
..+....++|++++|+||+++. |.|.|++++++... +.+...+.+ +
T Consensus 245 ~~~~~~~~vd~~~~s~hK~~~~-p~g~~~l~~~~~~~~~~~~~~~~~------------~-------------------- 291 (445)
T d3bc8a1 245 QQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFNEPFIQDISKMYPG------------R-------------------- 291 (445)
T ss_dssp HHHHHHSCCCEEEEEHHHHHSC-CSSCEEEEESCHHHHHHHHHHSCS------------C--------------------
T ss_pred hhccCcCCcceEEecCcccccc-CCCCceeeeCChHHHHHHHHHHhh------------c--------------------
Confidence 2233334689999999997665 99999999987532 111111111 0
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
. .+. +.+..+ .++..+...|+..+.++...+.++
T Consensus 292 ------~------------~~~---~~~~~~-------------------------~~~~~~g~~~~~~~~~~~~~~~~~ 325 (445)
T d3bc8a1 292 ------A------------SAS---PSLDVL-------------------------ITLLSLGCSGYRKLLKERKEMFVY 325 (445)
T ss_dssp ------B------------CSH---HHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------c------------cCc---chHHHH-------------------------HHHHHHhhhcchhhHHHHHHHHHH
Confidence 0 000 001111 345555555677777888888888
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCC-ccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE-KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKE 555 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~-~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~ 555 (632)
+.+.|.++.... | .++... ........+++....+. ..++..+...+.+.||..+.++.|-.. ....
T Consensus 326 ~~~~L~~l~~~~--~---~~~l~~---~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~--~~i~-- 393 (445)
T d3bc8a1 326 LSTQLKKLAEAH--N---ERLLQT---PHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV--QTVS-- 393 (445)
T ss_dssp HHHHHHHHHHHT--T---CCBCCC---TTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE--EEET--
T ss_pred HHHHHHHHHhhc--C---ceeecC---CCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccc--cchh--
Confidence 888888762100 1 111111 12334444555443221 234444555566678754433222211 0000
Q ss_pred hhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 556 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+..+... .. ..+......||++++.++|.||||+|++.|+++++.
T Consensus 394 -~~~~~~~--g~---------~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~ 438 (445)
T d3bc8a1 394 -GHTFRGF--MS---------HADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 438 (445)
T ss_dssp -TEEEETT--TT---------TSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhhc--CC---------CCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHH
Confidence 0000000 00 001233467999999999999999999999998875
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=6.5e-17 Score=164.12 Aligned_cols=297 Identities=11% Similarity=0.032 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+.++++|+++++++|++. +++||+|+|+|.+.+.... ...++.++. ...|.+.... .......+..+..++.
T Consensus 37 ~~~~~~l~~~la~~~g~~~---~v~f~~sGt~An~~a~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 110 (345)
T d1v72a1 37 DELTAQVKRKFCEIFERDV---EVFLVPTGTAANALCLSAM-TPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVD 110 (345)
T ss_dssp SHHHHHHHHHHHHHHTSCC---EEEEESCHHHHHHHHHHTS-CCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECC
T ss_pred CHHHHHHHHHHHHHHCCCc---EEEECCchHHHHHHHHHHH-HhcCCccccccccceeeech--hhHHHhcCcccccccc
Confidence 3677899999999999853 6999999999999999877 566666543 3444432122 2233456777777665
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCc-eeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCC---CCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQ-RGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPK---DMDSF 319 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~-~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~---~m~~l 319 (632)
+ ..+.++++++.+.+.+.+..... .-.++.....+..|...+ ++ +..+|+++|+++++|+++..+. ....+
T Consensus 111 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 189 (345)
T d1v72a1 111 G-PAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP 189 (345)
T ss_dssp C-GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT
T ss_pred c-ccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCH
Confidence 5 56778999999998865433222 223344444455555544 44 5678999999999999986521 11122
Q ss_pred CCCC--CCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhh
Q 006746 320 GLSL--VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 397 (632)
Q Consensus 320 dls~--~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 397 (632)
.... ..++.+..+.+|..+ . +.|..+......... +. ....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~------------------~~---------------~~~~- 232 (345)
T d1v72a1 190 AEMTWKAGVDALSFGATKNGV--L-AAEAIVLFNTSLATE------------------MS---------------YRRK- 232 (345)
T ss_dssp TTTTGGGTCCEEEECCGGGTC--S-SCEEEEESSGGGHHH------------------HH---------------HHHH-
T ss_pred HHhhccccccccccCcccccc--c-cccccccchhhhhhh------------------cc---------------cccc-
Confidence 2222 234555555555333 2 333333322211000 00 0000
Q ss_pred hhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHH
Q 006746 398 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 477 (632)
Q Consensus 398 ~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L 477 (632)
...++.+. ....+. .++..........+..+...+..++
T Consensus 233 ~~~~~~~~----------------~~~aa~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (345)
T d1v72a1 233 RAGHLSSK----------------MRFLSA-------------------------QIDAYLTDDLWLRNARKANAAAQRL 271 (345)
T ss_dssp HTTCCCSS----------------THHHHH-------------------------HHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred ccccccch----------------hhHHhh-------------------------hhHHHHHHhhhhhhccchhhHHHHH
Confidence 00011000 001111 2333333344677778888888999
Q ss_pred HHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhh
Q 006746 478 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 557 (632)
Q Consensus 478 ~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~ 557 (632)
...|.++ |.+++.+|. .+++|.|.+ +...+++|++ .||.+..+
T Consensus 272 ~~~l~~~--------~g~~~~~p~----~~niv~~~~--------~~~~~~~L~~-~gi~v~~~---------------- 314 (345)
T d1v72a1 272 AQGLEGL--------GGVEVLGGT----EANILFCRL--------DSAMIDALLK-AGFGFYHD---------------- 314 (345)
T ss_dssp HHHHTTC--------TTEEEESCC----CSSEEEEEE--------CHHHHHHHHH-TTCBCBCS----------------
T ss_pred HHHHHhc--------CCcEeccCC----CccEEEEEc--------CHHHHHHHHH-cCCCcccc----------------
Confidence 9999887 678888874 356776654 4456666554 57765432
Q ss_pred hhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 558 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
..+.+.||+|++.+||.||||++++.|++.
T Consensus 315 ----------------------~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 315 ----------------------RWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp ----------------------SSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ----------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 124579999999999999999999999863
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=1.4e-16 Score=167.01 Aligned_cols=293 Identities=13% Similarity=0.123 Sum_probs=191.9
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc--CC
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS--WP 250 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~--~~ 250 (632)
+.|+.|+++++++++ +|++|+|+|+|+.+++..+ ..+||.|++. ..|+. .. ..++..|.+++.++++ ..
T Consensus 65 elr~aiA~~~~~~~~--~Iiit~G~~~al~~~~~~l-~~~~d~v~~~~p~~~~-~~----~~~~~~g~~~~~~~~~~~~~ 136 (368)
T d1v2da_ 65 ALREALAEEFAVEPE--SVVVTSGATEALYVLLQSL-VGPGDEVVVLEPFFDV-YL----PDAFLAGAKARLVRLDLTPE 136 (368)
T ss_dssp HHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT-HH----HHHHHTTCEEEEEECEEETT
T ss_pred HHHHHHHhhcccCCc--ceeeccchHHHHHHHhhcc-ccccccccccCCcchh-hh----hHHHhcCCccceeccccccc
Confidence 789999999999876 7999999999999999998 6788987643 45553 22 2345678888888764 23
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccCCCC---CCCCCCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALGPKD---MDSFGLSL 323 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~~---m~~ldls~ 323 (632)
...+|.+++++++.++ +++++++..+|+||..++ ++ |+++|+++|+++++|.+...... ........
T Consensus 137 ~~~~d~~~l~~~~~~~------~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~ 210 (368)
T d1v2da_ 137 GFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA 210 (368)
T ss_dssp EEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC
T ss_pred cccCCHHHHHHhhccC------ceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccc
Confidence 4568999998887654 488999999999999998 66 77889999999999987654221 00111112
Q ss_pred CCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcccc
Q 006746 324 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 403 (632)
Q Consensus 324 ~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~ 403 (632)
.....++.++-|.+|.+..-+|++...++.++.+.... ..|. .++
T Consensus 211 ~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~------------~~~~----------------------~~~- 255 (368)
T d1v2da_ 211 PERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMR------------QWTS----------------------FSA- 255 (368)
T ss_dssp TTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHH------------HHHT----------------------SSC-
T ss_pred ccccceeecccccccccccccccccccccccchhhhhh------------hccc----------------------ccc-
Confidence 23456667777766642234677777666544332110 0000 000
Q ss_pred CCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhh-CHHHHHHHHHHHHHHHHHHHH
Q 006746 404 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALM 482 (632)
Q Consensus 404 ~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~-Gl~~I~~r~~~L~~~L~~~L~ 482 (632)
. .+.-..+ ..++...... -++.+.++.+...+++.+.|.
T Consensus 256 --~--------------~~~q~~~------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 295 (368)
T d1v2da_ 256 --P--------------TPLQAGV------------------------AEALKLARREGFYEALREGYRRRRDLLAGGLR 295 (368)
T ss_dssp --C--------------HHHHHHH------------------------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred --c--------------ccccccc------------------------ccccccccchhhHHHHHHHHHHhhhhhhhhHH
Confidence 0 0000001 1333322222 256667777777888899998
Q ss_pred ccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhh
Q 006746 483 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK 562 (632)
Q Consensus 483 ~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~ 562 (632)
++ | ++++.|. -+..+-+.+.++ .+.++++++||.++.|..|..
T Consensus 296 ~~------g---~~~~~p~----g~~~~~~~l~~~--------~~~~ll~~~gI~v~pg~~F~~---------------- 338 (368)
T d1v2da_ 296 AM------G---LRVYVPE----GTYFLMAELPGW--------DAFRLVEEARVALIPASAFYL---------------- 338 (368)
T ss_dssp HT------T---CCEECCS----BSSEEEEECTTC--------CHHHHHHHTCEECEEGGGGCS----------------
T ss_pred hc------C---cEEecCC----ceeEEEEeCCcc--------HHHHHHHhCCEEEEechhhCC----------------
Confidence 87 4 4566653 244444455442 245678889999987754432
Q ss_pred hhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 563 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+..+.+.||+|++ ++.|++++.++.|+++|
T Consensus 339 ----------------~~~~~~~iRis~~--~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 339 ----------------EDPPKDLFRFAFC--KTEEELHLALERLGRVV 368 (368)
T ss_dssp ----------------SSCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred ----------------CCCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence 1124579999986 68999999999999875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=5.7e-16 Score=164.30 Aligned_cols=303 Identities=12% Similarity=0.117 Sum_probs=205.9
Q ss_pred cccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHh
Q 006746 158 LKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEK 237 (632)
Q Consensus 158 ~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~ 237 (632)
..++..+|. .+++.+..+++++++|.+ ..++.++++.|...++.++ ..+++.|+....+|.... .-++.
T Consensus 73 ~~sr~~~g~--~~~~~~lE~~LA~~~g~e----~al~~~SG~~an~~~i~al-~~~~d~v~~d~~~h~si~----~g~~~ 141 (383)
T d1bs0a_ 73 GGSGHVSGY--SVVHQALEEELAEWLGYS----RALLFISGFAANQAVIAAM-MAKEDRIAADRLSHASLL----EAASL 141 (383)
T ss_dssp CSBTTTTCC--CHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHHHH----HHHHT
T ss_pred CccccccCc--chHHHHHHHHHHHhcCCC----ceEEecccchhhHHHHHhh-cCCCceEEeeccccHHHh----hcccc
Confidence 344443443 367789999999999985 4677889999999999998 578888888777665333 33456
Q ss_pred cCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCC
Q 006746 238 RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDM 316 (632)
Q Consensus 238 ~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m 316 (632)
.+++++.++. .|.+++++.+...+ +...++++..+.+.+|.+.|++ +.++|+++|++++||-||..|.-
T Consensus 142 ~~~~~~~~~h------nd~~~le~~l~~~~---~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~- 211 (383)
T d1bs0a_ 142 SPSQLRRFAH------NDVTHLARLLASPC---PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVI- 211 (383)
T ss_dssp SSSEEEEECT------TCHHHHHHHHHSCC---SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-
T ss_pred CCCcceEecc------hHHHHHHHHhcccC---CCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeec-
Confidence 7788876654 47889998887543 3568999999999999999999 99999999999999999988641
Q ss_pred CC-----CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCcccc
Q 006746 317 DS-----FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 391 (632)
Q Consensus 317 ~~-----ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 391 (632)
.. .+.-...+|+++.++=|.+|. + .|++......++.++.. +
T Consensus 212 G~~g~G~~~~~~~~~~~~~~t~~ka~g~-~--Gg~v~~~~~~~~~l~~~--~---------------------------- 258 (383)
T d1bs0a_ 212 GEQGRGSCWLQKVKPELLVVTFGKGFGV-S--GAAVLCSSTVADYLLQF--A---------------------------- 258 (383)
T ss_dssp SGGGCCHHHHTTCCCSEEEEESSSTTSS-C--CEEEEECHHHHHHHHHH--C----------------------------
T ss_pred CCcccchHHHcCCccccccccccccccc-c--ccccccchhHHHHHHhh--c----------------------------
Confidence 11 112234678999999999984 2 34445454444433221 0
Q ss_pred chhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHH
Q 006746 392 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGR 471 (632)
Q Consensus 392 ~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~ 471 (632)
..+ -|+. ....+.+.+.. ++++++.....+...+|..
T Consensus 259 -~~~--------~~s~----------~~~p~~~aa~~------------------------~a~~~~~~~~~~~~~~~l~ 295 (383)
T d1bs0a_ 259 -RHL--------IYST----------SMPPAQAQALR------------------------ASLAVIRSDEGDARREKLA 295 (383)
T ss_dssp -HHH--------HSSB----------CCCHHHHHHHH------------------------HHHHHHHSHHHHHHHHHHH
T ss_pred -hhh--------hhcc----------cccchHHHHHH------------------------HHHHHHHhhhhHHHHHHHH
Confidence 000 0000 00011122222 6777777767788899999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhH
Q 006746 472 CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDK 551 (632)
Q Consensus 472 ~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~ 551 (632)
.+..++++.|.++ |. .+ .+ ..++|+.+.+.+. -....+.+.+.++||.++... -|
T Consensus 296 ~~~~~~~~~l~~~------g~---~~-~~----~~s~Ii~v~~g~~----~~a~~~~~~L~~~Gi~v~~~~--~P----- 350 (383)
T d1bs0a_ 296 ALITRFRAGVQDL------PF---TL-AD----SCSAIQPLIVGDN----SRALQLAEKLRQQGCWVTAIR--PP----- 350 (383)
T ss_dssp HHHHHHHHHHTTS------SC---EE-CS----CCSSBCCEEEESH----HHHHHHHHHHHHTTEECCEEC--TT-----
T ss_pred HHHHHHHHHHHhc------CC---cc-CC----CCCCEEEEEECCH----HHHHHHHHHHHHCCceEEEEc--CC-----
Confidence 9999999999888 32 22 22 2367776666542 122344555556799876421 11
Q ss_pred HHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 006746 552 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ 608 (632)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~ 608 (632)
. -+.+...||++++..+|.|||+++++.|+.
T Consensus 351 -------------------t-------Vp~g~~~lRi~~~a~ht~edid~l~~~L~~ 381 (383)
T d1bs0a_ 351 -------------------T-------VPAGTARLRLTLTAAHEMQDIDRLLEVLHG 381 (383)
T ss_dssp -------------------S-------SCTTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred -------------------C-------CCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 0 022446899999999999999999999875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=5.3e-15 Score=157.64 Aligned_cols=299 Identities=10% Similarity=0.051 Sum_probs=199.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.+..++..+++++++|.+ .++++++++.|...++..+ ..++|.|+.....|.... .-+...++++..++.
T Consensus 89 ~~~~~~lE~~lA~~~g~e----~al~~~SG~~An~~~i~~l-~~~~d~i~~d~~~h~s~~----~G~~~~~a~~~~~~~- 158 (401)
T d1fc4a_ 89 QDSHKELEQKLAAFLGME----DAILYSSCFDANGGLFETL-LGAEDAIISDALNHASII----DGVRLCKAKRYRYAN- 158 (401)
T ss_dssp BHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHTTHHHH-CCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECT-
T ss_pred cHHHHHHHHHHHHhhcCC----ceEEecchhhhhHHHHHHh-cCCCcEEEeCCcchHHHH----ccccccCceEEEEcC-
Confidence 367788999999999985 5788999999999999888 578888887765554233 334566788776654
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCC--------C
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS--------F 319 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~--------l 319 (632)
.|.+++++++....+......++++..+.+..|...|++ +.++|+++|+.+++|.+|.+|. +.. .
T Consensus 159 -----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~-~g~~G~G~~~~~ 232 (401)
T d1fc4a_ 159 -----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGF-VGENGRGSHEYC 232 (401)
T ss_dssp -----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTT-SSTTSCCHHHHT
T ss_pred -----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhcccc-ccCCCCccchhc
Confidence 356677666654322234567999999999999999999 9999999999999999998864 111 2
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
++ .-++|++++++.|.+|. + +-|++.-+++.++.++... +.+ .
T Consensus 233 ~~-~~~~dii~~tl~Ka~gg-~-~Gg~v~g~~~~~~~l~~~~-------------------------------~~~---~ 275 (401)
T d1fc4a_ 233 DV-MGRVDIITGTLGKALGG-A-SGGYTAARKEVVEWLRQRS-------------------------------RPY---L 275 (401)
T ss_dssp TC-TTCCSEEEEESSSTTCS-S-SCEEEEECHHHHHHHHHHC-------------------------------HHH---H
T ss_pred cC-CCCCeEEEeeccccccc-C-CcccccCCHHHHHHHHcCC-------------------------------hhh---h
Confidence 22 23689999999998763 3 3455565666554332110 000 0
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
.++ +. +.+...+. ..+++.+.+ .+...+|++.+..++++
T Consensus 276 ~s~-~l--------------~p~~~~aa------------------------~~~l~~~~~--~~~~~~~l~~~~~~~~~ 314 (401)
T d1fc4a_ 276 FSN-SL--------------APAIVAAS------------------------IKVLEMVEA--GSELRDRLWANARQFRE 314 (401)
T ss_dssp HSC-CC--------------CHHHHHHH------------------------HHHHHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred hcC-CC--------------CHHHHHHH------------------------Hhhhccccc--CHHHHHHHHHHHHHHHh
Confidence 000 00 00111111 155555543 47778999999999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
.+.++ |.+. . ...++|+.+.+.+. .....+.+.+.++||.+..-. -|
T Consensus 315 ~l~~~------g~~~---~-----~~~~pIv~v~~~~~----~~a~~~~~~L~~~Gi~v~~i~--~P------------- 361 (401)
T d1fc4a_ 315 QMSAA------GFTL---A-----GADHAIIPVMLGDA----VVAQKFARELQKEGIYVTGFF--YP------------- 361 (401)
T ss_dssp HHHHT------TCCB---C-----CSSSSEEEEEEECH----HHHHHHHHHHHHTTEECCEEC--TT-------------
T ss_pred hhccc------CCcc---C-----CCCCCEEEEEECCH----HHHHHHHHHHHHCCceEEeEC--CC-------------
Confidence 99988 4322 1 23468888777652 112234444556798875210 00
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
. -+.+...||++++..+|.|||+++++.|++..++
T Consensus 362 -----------t-------Vp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~ 396 (401)
T d1fc4a_ 362 -----------V-------VPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp -----------S-------SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----------C-------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0124457999999999999999999999998654
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.66 E-value=1.7e-15 Score=151.40 Aligned_cols=136 Identities=12% Similarity=0.138 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
.+..+++|++|++++|++++ +|+||+|+|+|+++++.++ ..++++++... .|++ .... ... ...+.....+..
T Consensus 34 ~~~~~~lr~~ia~~~g~~~~--~v~~tsggtean~~a~~~~-~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~ 107 (340)
T d1svva_ 34 DSHCAKAARLIGELLERPDA--DVHFISGGTQTNLIACSLA-LRPWEAVIATQLGHIS-THET-GAI-EATGHKVVTAPC 107 (340)
T ss_dssp SHHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHHHHHHH-CCTTEEEEEETTSHHH-HSST-THH-HHTTCCEEEECC
T ss_pred CHHHHHHHHHHHHHhCCCcc--eEEEcCCHHHHHHHHHHHH-hhhcccccccccccee-eeec-ccc-cccceeeeeccc
Confidence 35678999999999999865 7999999999999999887 56777755443 3332 1111 111 223333333333
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~ 312 (632)
. ......++...+............++.+....+..|...+. . +...++++|..+++|.++..
T Consensus 108 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~ 174 (340)
T d1svva_ 108 P--DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLA 174 (340)
T ss_dssp T--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHH
T ss_pred c--cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeecccee
Confidence 2 22344555555544332222333444555544556665543 3 56788899999999998765
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.64 E-value=1.3e-14 Score=154.06 Aligned_cols=307 Identities=11% Similarity=0.055 Sum_probs=199.3
Q ss_pred ccccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEEeccccchhhHHHHHHH
Q 006746 157 NLKTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLTVYDYESEAVEAMIRTS 235 (632)
Q Consensus 157 n~~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt~~d~~s~~v~~~~~~a 235 (632)
.-.++...|. .++.++..+++++++|.+ ..++.+++..|.-.++..+. ..+++.|+.+..+|+.. ..-+
T Consensus 79 s~~Sr~~~G~--~~~h~~LE~~lA~~~g~e----~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi----~~g~ 148 (396)
T d2bwna1 79 SGGTRNISGT--TAYHRRLEAEIAGLHQKE----AALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASM----IEGI 148 (396)
T ss_dssp CCSBTTTBCC--BHHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHH----HHHH
T ss_pred ccccccccCC--chHHHHHHHHHHHHhCCC----ceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhcc----chhh
Confidence 3344444443 367789999999999996 34555677777777776663 35677777777666533 3344
Q ss_pred HhcCCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC
Q 006746 236 EKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK 314 (632)
Q Consensus 236 ~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~ 314 (632)
+..+++++..+.. |.+++++++.... +.+.+++++..+-+++|...|++ ++++++++|+.++||-||++|.
T Consensus 149 ~ls~a~~~~f~Hn------d~~~l~~l~~~~~--~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv 220 (396)
T d2bwna1 149 KRNAGPKRIFRHN------DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGM 220 (396)
T ss_dssp HHSCCCEEEECTT------CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred hccccCceEeecc------hHHHhhhHHhhhc--ccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeee
Confidence 5678888777543 6677877776532 34568999999999999999999 9999999999999999999875
Q ss_pred CCCC--------CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCC
Q 006746 315 DMDS--------FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 386 (632)
Q Consensus 315 ~m~~--------ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~ 386 (632)
+.+ +++. ..+|++++++=|.||. . -|++..+++.++.|...-.
T Consensus 221 -~G~~G~G~~~~~~~~-~~~di~~gTlsKa~g~-~--Gg~v~~~~~~i~~l~~~~~------------------------ 271 (396)
T d2bwna1 221 -YGPRGAGVAERDGLM-HRIDIFNGTLAKAYGV-F--GGYIAASARMVDAVRSYAP------------------------ 271 (396)
T ss_dssp -SSTTSCCHHHHHTCG-GGCSEEEEESSSTTCS-C--CEEEEECHHHHHHHHHHCH------------------------
T ss_pred -eccccccchhhcCCc-eeeeeeeecccccccc-c--ccccchhHHHHHHHHhhcc------------------------
Confidence 121 2332 4679999999999994 2 2455556555544432100
Q ss_pred CccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHH
Q 006746 387 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 466 (632)
Q Consensus 387 e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I 466 (632)
.+ -|+.. ...+.+.+.. ++++.+.+......
T Consensus 272 -------~~--------ifSta----------lpp~~~aa~~------------------------~al~i~~~~~~~~~ 302 (396)
T d2bwna1 272 -------GF--------IFSTS----------LPPAIAAGAQ------------------------ASIAFLKTAEGQKL 302 (396)
T ss_dssp -------HH--------HTSBC----------CCHHHHHHHH------------------------HHHHHHTSHHHHHH
T ss_pred -------hh--------hhccc----------CcHHHHHHHH------------------------HHHHHhhcchHHHH
Confidence 00 00000 0001111121 55666544333555
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCCh
Q 006746 467 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI 546 (632)
Q Consensus 467 ~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~ 546 (632)
.++.+..++++++.|.++ |.+.. ...++|+.+.+.+.. -.....++|++++||.+.... -|
T Consensus 303 r~~l~~~~~~~~~~l~~~------g~~~~--------~~~spIvpv~ig~~~---~~~~~a~~lL~e~Gi~v~~i~--~P 363 (396)
T d2bwna1 303 RDAQQMHAKVLKMRLKAL------GMPII--------DHGSHIVPVVIGDPV---HTKAVSDMLLSDYGVYVQPIN--FP 363 (396)
T ss_dssp HHHHHHHHHHHHHHHHHH------TCCBC--------CCSSSCEEEECCCHH---HHHHHHHHHHHHHCEECCEEC--TT
T ss_pred HHHHHHHHHHHHHHHHhc------CCCcC--------CCCCCEEEEEeCCHH---HHHHHHHHHHHhCCEEEEEEC--CC
Confidence 667778889999999988 54432 235789988775421 111223456767788875321 00
Q ss_pred HHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHh
Q 006746 547 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 609 (632)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~ 609 (632)
. -+.+...||++++-.+|.|||++|++.|+++
T Consensus 364 -----------------------t--------Vp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 364 -----------------------T--------VPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp -----------------------T--------SCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred -----------------------c--------CCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 0 0224468999999999999999999999874
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.9e-13 Score=140.96 Aligned_cols=167 Identities=10% Similarity=0.069 Sum_probs=114.6
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC--
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW-- 249 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~-- 249 (632)
+.+.+.+.+.+|.+.+..+|++|+|+++|+..++.++ .++||+|++. ..|+. +...++..|.+++.++.+.
T Consensus 42 ~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~P~y~~-----~~~~~~~~g~~~~~v~~~~~~ 115 (361)
T d1d2fa_ 42 AAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW-SETGEGVVIHTPAYDA-----FYKAIEGNQRTVMPVALEKQA 115 (361)
T ss_dssp HHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS-SCTTCEEEEEESCCHH-----HHHHHHHTTCEEEEEECEECS
T ss_pred HHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc-cccccccccccccccc-----hhHHHHhhcceEEeecccccc
Confidence 3344444444465433338999999999999999999 7899997654 45543 2344566799988887652
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc---hH-HHHHHhhCCcEEEEeccccC---CCCCCCCCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG---PKDMDSFGLS 322 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p---l~-i~~~a~~~g~~vlvDaaq~~---g~~m~~ldls 322 (632)
....++.+++++.+.+. ++++++++..+|+||..++ ++ |+++|+++|+++++|.+... +.. ....+.
T Consensus 116 ~~~~~d~~~~~~~~~~~-----~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~-~~~~~~ 189 (361)
T d1d2fa_ 116 DGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ-PHIPWS 189 (361)
T ss_dssp SSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS-CCCCGG
T ss_pred cccccccccchhhcccC-----CceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccc-cccccc
Confidence 33457999999988653 4689999999999999998 55 78889999999999987543 110 111111
Q ss_pred CC--CCcEEEEccccccCCCCCceEEEEEeC
Q 006746 323 LV--RPDFLICSFYQIFGENPSGFGCLFVKK 351 (632)
Q Consensus 323 ~~--~~Df~~~S~hK~~G~~P~G~G~L~Vr~ 351 (632)
.. .--+++.|+-|.+|.+..++|.+++..
T Consensus 190 ~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~ 220 (361)
T d1d2fa_ 190 NVARGDWALLTSGSKSFNIPALTGAYGIIEN 220 (361)
T ss_dssp GTCCSSEEEEECSHHHHTCGGGCCEEEEECS
T ss_pred cccccccccccccccccccccccceeeecch
Confidence 11 223677788887775223566666654
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.57 E-value=3.1e-14 Score=150.50 Aligned_cols=170 Identities=15% Similarity=0.129 Sum_probs=117.1
Q ss_pred HHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 174 AMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+.|+.|++++ |..-+...|++|+|+++|+.+++.++ ..+||.|++.. .|+. . ...++..|++++.++.+
T Consensus 71 ~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~-~~~gd~Vlv~~P~y~~--~---~~~~~~~~~~~v~~~~~ 144 (388)
T d1j32a_ 71 RLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM-IEPGDEVIIPAPFWVS--Y---PEMVKLAEGTPVILPTT 144 (388)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTH--H---HHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHH-hCCCCEEEEcCCCcHH--H---HHHHHHhcCeEEEEecc
Confidence 4555565543 44333337999999999999999998 78999987653 4542 2 23445678888888875
Q ss_pred CC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCCCC
Q 006746 249 WP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMDSF 319 (632)
Q Consensus 249 ~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~~l 319 (632)
.. +..++.++|++.++++ +++++++..+|+||..++.+ |+++|+++|+++++|-+... +....++
T Consensus 145 ~~~~~~~d~~~l~~~~~~~------~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~ 218 (388)
T d1j32a_ 145 VETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI 218 (388)
T ss_dssp GGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred cccccCCCHHHHHHhCCCC------CeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCH
Confidence 32 3458999999888754 48899999999999999866 56678999999999987422 1110111
Q ss_pred C-CC--CCCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 320 G-LS--LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 320 d-ls--~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
. +. ...-.+++.|+.|.||.+---+|+++..++.++
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~ 257 (388)
T d1j32a_ 219 GAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVK 257 (388)
T ss_dssp GGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHH
T ss_pred HHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHH
Confidence 1 00 012358999999999952122688877665543
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.57 E-value=7.3e-14 Score=147.67 Aligned_cols=164 Identities=11% Similarity=0.139 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEE-eccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLT-VYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt-~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+..+++..+++++++|++ .+++|+|+|.|+.+++.++.+++||+|++ .+.+.+ .. ......|++++.+++
T Consensus 33 g~~v~~fE~~~a~~~g~~----~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a-~~----~ai~~~g~~p~~~d~ 103 (384)
T d1b9ha_ 33 GDEVNSFEREFAAHHGAA----HALAVTNGTHALELALQVMGVGPGTEVIVPAFTFIS-SS----QAAQRLGAVTVPVDV 103 (384)
T ss_dssp CSHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH-HH----HHHHHTTCEEEEECB
T ss_pred CHHHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccc-cc----ccccccccccccccc
Confidence 356778899999999996 47899999999999999999999999764 566664 22 234668999999999
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+..+..++++++++.+++++ +.+++. +..|...+++ |.++|+++|+.++.|+||+.|.....-.+-. --
T Consensus 104 ~~~~~~~d~~~~~~~i~~~t------k~i~~~---~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~-~g 173 (384)
T d1b9ha_ 104 DAATYNLDPEAVAAAVTPRT------KVIMPV---HMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGE-LD 173 (384)
T ss_dssp CTTTCCBCHHHHHHHCCTTE------EEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGG-SS
T ss_pred cccccccchhhhcccccccc------cccccc---cccccccccccchhhhhhhhhhhhhhhceecccccCCEecCc-cc
Confidence 87788899999999887654 666554 4588899999 9999999999999999999875211100111 12
Q ss_pred cEEEEccc--cccCCCCCceEEEEEeCCC
Q 006746 327 DFLICSFY--QIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 327 Df~~~S~h--K~~G~~P~G~G~L~Vr~~~ 353 (632)
|+.++||| |.++. . +-|+++++++-
T Consensus 174 ~~~~~Sf~~~K~i~~-g-~GG~i~t~~~~ 200 (384)
T d1b9ha_ 174 SIATFSFQNGKLMTA-G-EGGAVVFPDGE 200 (384)
T ss_dssp SCEEEECCTTSSSCS-S-SCEEEEECTTC
T ss_pred ccceecccccccccc-c-ccchhhhhhHH
Confidence 77777775 76663 2 44666666543
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2e-13 Score=142.09 Aligned_cols=169 Identities=9% Similarity=0.111 Sum_probs=118.4
Q ss_pred HHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCe-EEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 173 SAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKN-LLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 173 ~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~-ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
.+.|+.|++++|++|+ .|++|+|+++++.++..++ ..+||. |++. ..|. .....++..|++++.++.+ +
T Consensus 59 ~~Lr~~ia~~~gv~pe--~I~it~Gs~eai~~~~~~~-~~pgd~~Vl~~~P~y~-----~~~~~~~~~g~~v~~~~~~-~ 129 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYG-----MYSVSAETIGVECRTVPTL-D 129 (354)
T ss_dssp HHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCT-----HHHHHHHHHTCEEEECCCC-T
T ss_pred HHHHHHHHHHhCCChH--HeeeccCchHHHHHHHHHh-hccccccccccccccc-----cchhhhhccCceeeccccc-c
Confidence 3789999999999987 7999999999999999999 688985 6654 3443 2234556779999988886 6
Q ss_pred ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-H---HHHHhhCCcEEEEeccc-cCCCCCCCCCCCCCC
Q 006746 251 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-W---MRIAQENDWHILIDACA-LGPKDMDSFGLSLVR 325 (632)
Q Consensus 251 ~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i---~~~a~~~g~~vlvDaaq-~~g~~m~~ldls~~~ 325 (632)
+..+|.++++..+. +++++.++..+|+||..++-+ + ...++.+++.++-|+.. ..+....+.......
T Consensus 130 ~~~~d~~~l~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~ 202 (354)
T d1fg7a_ 130 NWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYP 202 (354)
T ss_dssp TSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCT
T ss_pred ccccchhhhhhccc-------ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccc
Confidence 67789888876542 368999999999999999865 3 33344444444444432 222110111123344
Q ss_pred CcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 326 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
--+++.|+.|.||.+...+|+++..++.++.+
T Consensus 203 ~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l 234 (354)
T d1fg7a_ 203 HLAILRTLSKAFALAGLRCGFTLANEEVINLL 234 (354)
T ss_dssp TEEEEEESSSTTCCGGGCCEEEEECHHHHHHH
T ss_pred cceEEeCCccccCCCccccccccccchhhhhh
Confidence 45778899999996334568888877766544
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.56 E-value=1.5e-14 Score=152.78 Aligned_cols=171 Identities=10% Similarity=0.065 Sum_probs=129.5
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCE
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~ 241 (632)
.|++....-.+...++|+++-|+. ..+.++++..|+..+..++ .++||+|+... -|.. ....+....++.|++
T Consensus 52 ~Y~R~~nPT~~~LE~~la~LEg~~----~a~~~~SGmaAi~~~l~~l-~~~Gd~vl~~~~~Yg~-t~~l~~~~~~~~Gi~ 125 (392)
T d1gc0a_ 52 FYSRISNPTLNLLEARMASLEGGE----AGLALASGMGAITSTLWTL-LRPGDEVLLGNTLYGC-TFAFLHHGIGEFGVK 125 (392)
T ss_dssp -----CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCSH-HHHHHHHTGGGGTCE
T ss_pred eecCCCChHHHHHHHHHHHHhCCc----ceeehhhHHHHHHHHHHhh-ccCCCeeecccccchh-hhhhhhhhhccCCcc
Confidence 355555556678888999999985 3456689999999998888 68999987654 4554 566667777889999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
+.+++.. +.++++++|+++ ++|+.+-..+|++..+.||+ |+++||++|+.++||.+-+-|....||+
T Consensus 126 ~~~~d~~------d~~~~~~ai~~~------t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~ 193 (392)
T d1gc0a_ 126 LRHVDMA------DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLE 193 (392)
T ss_dssp EEEECTT------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGG
T ss_pred cccCCcc------CHHHHHHhCCCC------CeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccChHH
Confidence 9998653 678999988875 49999999999999999999 9999999999999999866554334776
Q ss_pred CCCCCCcEEEEccccccCCCCCc-eEEEEEeCCCc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSG-FGCLFVKKSTV 354 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G-~G~L~Vr~~~~ 354 (632)
+ ++|+++-|.-|.+|.+--. .|++.+++..+
T Consensus 194 ~---GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~ 225 (392)
T d1gc0a_ 194 L---GADLVVHSATKYLSGHGDITAGIVVGSQALV 225 (392)
T ss_dssp G---TCSEEEEETTTTTTCSSSCCCEEEEECHHHH
T ss_pred h---CCCEEEEecceeecCCcccccccccchhHHH
Confidence 4 8999999999976522222 35555555443
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=9.2e-14 Score=146.14 Aligned_cols=171 Identities=15% Similarity=0.150 Sum_probs=121.2
Q ss_pred HHHHHHHHHcC----C-CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDFLN----I-SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~l~----a-~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.|+++++ . ...+.+|++|+|+++++.++..++ ..+||+|++. ..|+. + ...++..|++++.++.
T Consensus 66 ~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l-~~~gd~vlv~~P~y~~--~---~~~~~~~g~~~~~~~~ 139 (388)
T d1gdea_ 66 ELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-LKDGEEVLIPTPAFVS--Y---APAVILAGGKPVEVPT 139 (388)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-CCTTCEEEEEESCCTT--H---HHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHh-cCCCCEEEECCCCcHH--H---HHHHHHcCCEEEEeec
Confidence 67888887763 1 112337999999999999999998 7899998754 34543 2 3345678999999998
Q ss_pred cCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCCC
Q 006746 248 SWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMDS 318 (632)
Q Consensus 248 ~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~~ 318 (632)
+.. +..+|+++|++.++++ ++++.++..+|+||..++.+ |+++|+++++++++|.+..- +....+
T Consensus 140 ~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~ 213 (388)
T d1gdea_ 140 YEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYS 213 (388)
T ss_dssp CGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCC
T ss_pred ccccCCCCCHHHHHHhCccC------CeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCC
Confidence 633 3368999999888654 58999999999999999854 66788999999999987432 111011
Q ss_pred -CCCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCccc
Q 006746 319 -FGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPI 356 (632)
Q Consensus 319 -ldls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~ 356 (632)
..+.. .+..+++.|+-|.||.+---+|.++..++.+..
T Consensus 214 ~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~ 253 (388)
T d1gdea_ 214 IASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIER 253 (388)
T ss_dssp GGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHH
T ss_pred hhhccCCCCeEEEEeCChhhccCccccEEEEEeeccchhh
Confidence 11111 233588999999998522346888877665443
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.56 E-value=1.9e-13 Score=142.10 Aligned_cols=165 Identities=7% Similarity=0.069 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCccc
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLR 253 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~ 253 (632)
+.|+.|++++|++++ .|+.|+++++++.++...+ .+++.++....+.. . .......++.+..++++..++.
T Consensus 61 ~Lr~aia~~~~v~~~--~I~~~~g~~~~~~~~~~~~--~~~~~~v~~p~~~~--~---~~~~~~~~~~~~~v~~~~~~~~ 131 (355)
T d1lc5a_ 61 HLHQALARHHQVPAS--WILAGNGETESIFTVASGL--KPRRAMIVTPGFAE--Y---GRALAQSGCEIRRWSLREADGW 131 (355)
T ss_dssp HHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTH--H---HHHHHHTTCEEEEEECCGGGTT
T ss_pred HHHHHHHHHhCCCHH--HEEecccHHHHHHHHHhhh--ccccccccCCccce--e---ccccccccccceeeeeeccCCc
Confidence 689999999999876 7999999999999988875 23333443333332 2 2234557889999998744443
Q ss_pred cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc--CCCCCCCCC-CCCCCC
Q 006746 254 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL--GPKDMDSFG-LSLVRP 326 (632)
Q Consensus 254 i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~--~g~~m~~ld-ls~~~~ 326 (632)
...+.+.+.+.+ +++++.++..+|+||..++.+ |+++|+++++++++|-+.. .+....... ....+-
T Consensus 132 ~~~~~~~~~~~~------~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 205 (355)
T d1lc5a_ 132 QLTDAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH 205 (355)
T ss_dssp CCCTTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred cceeeeeecccc------ccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccccccccc
Confidence 333455555544 358899999999999999854 6678889999999998754 221101111 122334
Q ss_pred cEEEEccccccCCCCCceEEEEEeCCC
Q 006746 327 DFLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 327 Df~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
.+++.|+-|.||.+..-+|+++..++.
T Consensus 206 ~i~~~S~SK~~~l~GlR~G~~i~~~~~ 232 (355)
T d1lc5a_ 206 IWVLRSLTKFYAIPGLRLGYLVNSDDA 232 (355)
T ss_dssp EEEEEESTTTTTCTTTCCEEEECCCHH
T ss_pred ceeecccccccccccccccceeccchh
Confidence 589999999999632337988877654
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.55 E-value=8.9e-14 Score=149.02 Aligned_cols=174 Identities=16% Similarity=0.178 Sum_probs=120.8
Q ss_pred HHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEE
Q 006746 174 AMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 174 ~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
+.|+.|+++++ ++|+ .|++|+|+|+|+.+++.++ ..+||+|++. ..|+. .... +....|++++.
T Consensus 88 ~LR~aiA~~l~~~~~~~~~~~pe--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P~y~~-~~~~---~~~~~g~~~v~ 160 (431)
T d1m7ya_ 88 AFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPG-FDRD---LKWRTGVEIVP 160 (431)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTT-HHHH---TTTTTCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCCchh-HHHH---HHHhcCceecc
Confidence 57778877753 3444 7999999999999999998 6899998754 35543 2221 22346899998
Q ss_pred EeccCCc-cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC----CCC
Q 006746 245 AEFSWPR-LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG----PKD 315 (632)
Q Consensus 245 v~~~~~~-~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~----g~~ 315 (632)
++.+..+ ..++.+.+++.+.+..+...++++++++..+|+||..++. + |+++|+++|+++++|.+... +..
T Consensus 161 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~ 240 (431)
T d1m7ya_ 161 IHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS 240 (431)
T ss_dssp EECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSC
T ss_pred ccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCC
Confidence 8886333 4578999998887644445578999999999999999984 4 67888999999999986432 100
Q ss_pred ---CC----CCCCC----CCCCcEEEEccccccCCCCCceEEEEEeCCCc
Q 006746 316 ---MD----SFGLS----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 316 ---m~----~ldls----~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~ 354 (632)
+. ..++. ..+-=+++.|+-|.||.+..-+|+++..++.+
T Consensus 241 ~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i 290 (431)
T d1m7ya_ 241 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMV 290 (431)
T ss_dssp CCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHH
T ss_pred CCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhh
Confidence 00 00000 01112778899999986323478888766543
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=6.5e-14 Score=141.92 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
..+.+.+++|++++|.+ .++|++|+|+|+.+++..+ .++|+.++.....+...... ...+...+..+..++.
T Consensus 34 p~~~~le~~lA~~~G~~----~~~~~~sGt~A~~~al~a~-~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 105 (343)
T d1m6sa_ 34 PTINELERLAAETFGKE----AALFVPSGTMGNQVSIMAH-TQRGDEVILEADSHIFWYEV-GAMAVLSGVMPHPVPG-- 105 (343)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCHHHHSST-THHHHHTCCEEEEECE--
T ss_pred HHHHHHHHHHHHHHCCC----eEEEeCCHHHHHHHHHHHH-hccCCceeccccccceeeec-ccccccccceeecccc--
Confidence 56678999999999985 4789999999999998887 67888876544333212222 2233445666666655
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEec-cCCCCccccchH----HHHHHhhCCcEEEEeccccC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYPYL----WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~-~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~ 312 (632)
..+..+++.+++.+...++....+.++.++. ..+..|...|++ |.++|+++|+.+++|+++..
T Consensus 106 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~ 173 (343)
T d1m6sa_ 106 KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIF 173 (343)
T ss_dssp ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHH
T ss_pred ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccccc
Confidence 4556799999999987654444556555555 555566666555 55667899999999998765
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.51 E-value=5.6e-13 Score=140.84 Aligned_cols=169 Identities=11% Similarity=0.159 Sum_probs=115.5
Q ss_pred HHHHHHHHHc----C--CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL----N--ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l----~--a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ | ++++ .|++|+|+++++.++..++ ..+||+|++. -.|+. ....++..|+++..++
T Consensus 75 ~lR~aia~~l~~~~g~~~~~~--~I~it~G~~~al~~~~~~l-~~~gd~v~~~~P~y~~-----~~~~~~~~g~~~~~v~ 146 (403)
T d1wsta1 75 PLRLALARWMEKRYDIPMSKV--EIMTVAGSQQALDLIGRVF-LNPGDPIVVEAPTYLA-----AIQAFKYYDPEFISIP 146 (403)
T ss_dssp HHHHHHHHHHHHHHCCCCTTC--EEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCChH--HeeecccchHHHHHHHHHH-hhcCCccccCCCcchh-----hhHHHhhccccceeEe
Confidence 5777777775 3 5554 7999999999999999998 6889997654 34442 2344577899999999
Q ss_pred ccCCccccCHHHHHH---HHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCC
Q 006746 247 FSWPRLRINSEKLRK---MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKD 315 (632)
Q Consensus 247 ~~~~~~~i~~~~l~~---~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~ 315 (632)
.+... .+...+.. ....+ .++.+.++.++..+|+||..++.+ |+++|+++++++++|.+..- +..
T Consensus 147 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~ 222 (403)
T d1wsta1 147 LDDKG--MRVDLLEEKLEELRKQ--GKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEP 222 (403)
T ss_dssp EETTE--ECHHHHHHHHHHHHHT--TCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC
T ss_pred ecccC--Cccccccccchhhhhc--cccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCC
Confidence 87322 22222222 22221 134567888999999999999875 56778999999999986431 111
Q ss_pred CCCC-CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 316 MDSF-GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 316 m~~l-dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
..++ .....+.-+++.|+.|.++ +.-.+|+++..++.++
T Consensus 223 ~~~~~~~~~~~~~i~~~S~SK~~~-~G~RiG~~i~~~~~i~ 262 (403)
T d1wsta1 223 TPPIKHFDDYGRVIYLGTFSKILA-PGFRIGWVAAHPHLIR 262 (403)
T ss_dssp CCCGGGGCSSSCEEEEEESTTTTC-GGGCCEEEEECHHHHH
T ss_pred CCcccccCCCCcEEEEccccceec-CcccccccccchHHHH
Confidence 1122 1234566799999999876 2456788887766554
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.51 E-value=1.4e-12 Score=137.52 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=130.0
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
||+....-.+...++|+++-|+. ..+.++++..|+..+..++ .++||+|+...+-.......+.....+.|+++.
T Consensus 57 Y~R~~nPT~~~LE~~la~LEgg~----~a~~~sSGmaAi~~~l~~l-l~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~ 131 (397)
T d1y4ia1 57 YTRLGNPTTDALEKKLAVLERGE----AGLATASGISAITTTLLTL-CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVR 131 (397)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEE
T ss_pred eeCCCCHHHHHHHHHHHHHhCCc----cceeehHHHHHHHHHHhhc-cCCCCeeeeecccccccchhhhcccCCCceEee
Confidence 45444455567888999998884 3456679999999888888 789999887654443355666677788999999
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLS 322 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls 322 (632)
.+... +.++++++|+++ ++||.+-..+|++..+.|++ |+++||++|+.++||.+-+-|....|++
T Consensus 132 ~vd~~------d~~~~~~~i~~~------Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~-- 197 (397)
T d1y4ia1 132 FVDAG------KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ-- 197 (397)
T ss_dssp EECTT------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG--
T ss_pred ccCCC------CHHHHHHhcCCC------CcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcchh--
Confidence 88653 578999988765 59999999999999999999 9999999999999999866665445665
Q ss_pred CCCCcEEEEccccccCCCCCce-EEEEEeCCC
Q 006746 323 LVRPDFLICSFYQIFGENPSGF-GCLFVKKST 353 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~-G~L~Vr~~~ 353 (632)
+++|+++-|.-|.+|.+---+ |++..+++.
T Consensus 198 -~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~ 228 (397)
T d1y4ia1 198 -LGADIVVHSVTKYINGHGDVIGGIIVGKQEF 228 (397)
T ss_dssp -GTCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred -cCCCEEEEehhhhcCCCcceeeeccCCCHHH
Confidence 489999999999665222222 444444443
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.50 E-value=7.6e-13 Score=141.52 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=119.9
Q ss_pred HHHHHHHHHcC--------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEE
Q 006746 174 AMKKRIMDFLN--------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMS 244 (632)
Q Consensus 174 ~~R~~ia~~l~--------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~ 244 (632)
+.|+.|+++++ .+++ .|++|+|+++|+.+++.++ ..+||+|++.. .|++ +.. .+....|++++.
T Consensus 87 ~LR~aiA~~l~~~~~~~~~~~~e--~Ivit~G~~~al~~~~~~l-~~~Gd~Vlv~~P~y~~--~~~--~~~~~~g~~~v~ 159 (428)
T d1iaya_ 87 EFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPA--FNR--DLRWRTGVQLIP 159 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTT--HHH--HTTTTTCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCChh--hEEEcCCHHHHHHHHHHHh-CCCCCEEEEccCCchH--HHH--HHHHhcCCeEEE
Confidence 67888888753 3444 7999999999999999998 68999987654 4443 211 122346899999
Q ss_pred EeccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccch---H-HHHHHhhCCcEEEEeccccC----CCC
Q 006746 245 AEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACALG----PKD 315 (632)
Q Consensus 245 v~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl---~-i~~~a~~~g~~vlvDaaq~~----g~~ 315 (632)
++.+. .+..++.++++.++....+...++++++++..+|+||..++. + |+++|+++|+++++|.+... +..
T Consensus 160 v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~ 239 (428)
T d1iaya_ 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC
T ss_pred eecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCccc
Confidence 98863 345688998888776433334578999999999999999984 5 77889999999999997542 110
Q ss_pred CCC---------CCCCCCCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 316 MDS---------FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 316 m~~---------ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
..+ .......--+++.|+-|.||.+..-+|+++..++
T Consensus 240 ~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~ 285 (428)
T d1iaya_ 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND 285 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH
T ss_pred ccccccccchhhccccccceEEEEecCCCcccCCCccccccccccc
Confidence 000 0011112247889999988852234788777554
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.49 E-value=6.3e-12 Score=131.47 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-EeccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TVYDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+..+++..+.+++++|.. .+++++|+|.|+.+++.++.+++||+|+ ..+.+.+ .+.. ....|++++.+.+
T Consensus 20 G~~~~~fE~~~~~~~~~~----~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a-~~~~----~~~~g~~pv~~Di 90 (374)
T d1o69a_ 20 GEFVNRFEQSVKDYSKSE----NALALNSATAALHLALRVAGVKQDDIVLASSFTFIA-SVAP----ICYLKAKPVFIDC 90 (374)
T ss_dssp THHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGG-GTHH----HHHTTCEEEEECB
T ss_pred CHHHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHh-hHHH----HhhccceeEeccc
Confidence 467889999999999996 4889999999999999999999999976 5577775 3333 3457999999998
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRP 326 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~~~ 326 (632)
+ ++......+........ .++++.+.+.|. .|...+++ |.++|+++|+.|+-|+||+.|.....-.+-.+ -
T Consensus 91 ~-~~~~~~~~~~~~~~~~~---~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~-g 162 (374)
T d1o69a_ 91 D-ETYNIDVDLLKLAIKEC---EKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTF-G 162 (374)
T ss_dssp C-TTSSBCHHHHHHHHHHC---SSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-S
T ss_pred c-cccccccccccccchhc---cccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCC-C
Confidence 8 33333333333322221 124577777665 79999999 99999999999999999999752111111112 2
Q ss_pred cEEEEccc--cccCCCCCceEEEEEeCC
Q 006746 327 DFLICSFY--QIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 327 Df~~~S~h--K~~G~~P~G~G~L~Vr~~ 352 (632)
|+.++||| |.++. .|-|+++.+++
T Consensus 163 d~~~fSf~~~K~l~t--geGG~i~tnn~ 188 (374)
T d1o69a_ 163 EFGVYSYNGNKIITT--SGGGMLIGKNK 188 (374)
T ss_dssp SEEEEECCTTSSSCC--SSCEEEEESCH
T ss_pred ceEEEeccCcccccc--ccceeehhhhH
Confidence 99999999 76663 25577777654
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.48 E-value=1.3e-12 Score=136.82 Aligned_cols=333 Identities=11% Similarity=0.064 Sum_probs=200.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCC--eEE-EeccccchhhHHHHHHHHhcCCEEEEE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVK--NLL-TVYDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd--~il-t~~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
++.+++..+++++++|+. .+|+++|+|.|+.+++.++...+|| +|+ ..+.+.+. + ......|++++.+
T Consensus 30 G~~v~~fE~~~~~~~g~k----~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~-~----~ai~~~G~~pv~v 100 (371)
T d2fnua1 30 GKRSLLFEEALCEFLGVK----HALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVAT-A----NMLLESGYTPVFA 100 (371)
T ss_dssp SHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHH-H----HHHHHTTCEEEEC
T ss_pred CHHHHHHHHHHHHHHCcC----eEEEEecHHHHHHHHHHHhcccCCCCCeeeccccccccc-c----eeeeccCcccccc
Confidence 456788999999999996 4789999999999999999887765 565 45677752 2 2235589999999
Q ss_pred eccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCCCCC
Q 006746 246 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLV 324 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldls~~ 324 (632)
+++. +..++.+++++.++++ ++.++++| .-|...+++ |.++|+++|+.++-|+||+.|.....-.+ ..
T Consensus 101 Di~~-~~~~~~~~~~~~~~~~------t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~-G~ 169 (371)
T d2fnua1 101 GIKN-DGNIDELALEKLINER------TKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKV-GG 169 (371)
T ss_dssp CBCT-TSSBCGGGSGGGCCTT------EEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEET-TS
T ss_pred cccc-cccccchhhhhhccch------hhcccccc---ccccccccccccccccccchhhccchhhccCceeccccC-Cc
Confidence 9984 4456667776655543 57777776 479999999 99999999999999999999752111111 11
Q ss_pred CCcEEEEccc--cccCCCCCceEEEEEeCC-CccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhcc
Q 006746 325 RPDFLICSFY--QIFGENPSGFGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 401 (632)
Q Consensus 325 ~~Df~~~S~h--K~~G~~P~G~G~L~Vr~~-~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~g 401 (632)
.-|+.++||| |.++ ..+-|+++.+++ ..++++.....|..... .|... . ..-|
T Consensus 170 ~g~~~~~Sf~~~K~l~--~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~-----~~~~~---------------~--~~~G 225 (371)
T d2fnua1 170 FALASVFSFHAIKPIT--TAEGGAVVTNDSELHEKMKLFRSHGMLKKD-----FFEGE---------------V--KSIG 225 (371)
T ss_dssp SSSEEEEECCTTSSSC--CSSCEEEEESCHHHHHHHHHHTBTTEEESS-----SSCEE---------------E--SSCC
T ss_pred cccccccccccccccc--cccceEEEeechhhhhhccccccccccccc-----ccccc---------------c--cccc
Confidence 2388888887 7666 335466666543 33333322111322110 00000 0 0011
Q ss_pred ccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 006746 402 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 481 (632)
Q Consensus 402 t~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L 481 (632)
.. ....++++. .++..++ -++.+.++-+.+..++.+.|
T Consensus 226 ~n---------------~r~sel~Aa-------------------------igl~qL~--~l~~~~~~R~~~~~~y~~~l 263 (371)
T d2fnua1 226 HN---------------FRLNEIQSA-------------------------LGLSQLK--KAPFLMQKREEAALTYDRIF 263 (371)
T ss_dssp CB---------------CCCCHHHHH-------------------------HHHHHHT--THHHHHHHHHHHHHHHHHHH
T ss_pred cc---------------ccccchhhh-------------------------hhhhhhh--hccchhhhhhhhhhhhcccc
Confidence 10 111222221 3444444 36777778888888888888
Q ss_pred HccCCCCCCCCCcEEEECCCCCC-CCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 482 MKLQHPNTEGNALVKIYGPKIRF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 482 ~~l~h~~~~G~p~v~Iygp~~~~-~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
..+ +.+++.-|.... .......+-+.+... .....+.+.+.++||.++..+. +-....... ...
T Consensus 264 ~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~r~~~~~~L~~~gI~~~~~y~--pl~~~~~~~---~~~ 328 (371)
T d2fnua1 264 KDN--------PYFTPLHPLLKDKSSNHLYPILMHQKFF--TCKKLILESLHKRGILAQVHYK--PIYQYQLYQ---QLF 328 (371)
T ss_dssp TTC--------SSEEESGGGCSSCCCCSCEEEEECGGGG--GGHHHHHHHHHHTTEECBCCCC--CGGGSHHHH---HHH
T ss_pred ccc--------ccccccccccccccccccccccccccch--hHHHHHHHHHHHCCCCcceeCc--ccccCHHHH---hcc
Confidence 876 667665443211 122333444443211 2345677777889999886542 211111100 000
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
... .| ++. .......|.+=+|..-|.+||++.++.|++|+++
T Consensus 329 ~~~-~~-----pna----e~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 329 NTA-PL-----KSA----EDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 370 (371)
T ss_dssp CCC-CC-----HHH----HHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccC-CC-----HHH----HHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 000 00 000 0112247888888889999999999999999874
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=7.5e-13 Score=140.84 Aligned_cols=173 Identities=17% Similarity=0.234 Sum_probs=115.6
Q ss_pred HHHHHHHHHc----CC---CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFL----NI---SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l----~a---~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.|++++ |. +++ .|++|+|+++|+.+++..+ ..+||+|++. ..|+. ....++..|++++.+
T Consensus 84 ~LR~aia~~~~~~~g~~~~~~~--~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~-----~~~~~~~~g~~~~~~ 155 (420)
T d1vp4a_ 84 VLKQQILKLLERMYGITGLDED--NLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYLG-----AINAFRQYLANFVVV 155 (420)
T ss_dssp HHHHHHHHHHHHHHCCCSCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHH--HeEeccchhhhHHHHHHhh-hccccccccccccccc-----hhHHHHHHhhhcccc
Confidence 4666666654 43 443 7999999999999999998 6889997754 34442 234567789999999
Q ss_pred eccCCccccCHHHHHHHHHh---cCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CC
Q 006746 246 EFSWPRLRINSEKLRKMVVS---KGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PK 314 (632)
Q Consensus 246 ~~~~~~~~i~~~~l~~~i~~---~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~ 314 (632)
+.+. . .++.+.+...+.+ ..+.++.+.+++++..+|+||..++.+ |+++|+++++++++|.+... +.
T Consensus 156 ~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~ 233 (420)
T d1vp4a_ 156 PLED-D-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE 233 (420)
T ss_dssp EEET-T-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC
T ss_pred cccc-c-ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc
Confidence 9873 3 3677777665542 111234567888899999999999764 67889999999999987432 11
Q ss_pred CCCC-CCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 315 DMDS-FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 315 ~m~~-ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
...+ ......+.-+++.++-|+++ +.-.+|+++..++.++.+
T Consensus 234 ~~~~~~~~~~~~~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~~l 276 (420)
T d1vp4a_ 234 TVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKI 276 (420)
T ss_dssp CCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHH
T ss_pred ccccccccccccceeEEeccccccc-cccccccccccchhhhhh
Confidence 0001 11112234466777777665 234678877766655433
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=4.9e-12 Score=132.82 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=118.6
Q ss_pred HHHHHHHHHc------CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEe
Q 006746 174 AMKKRIMDFL------NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAE 246 (632)
Q Consensus 174 ~~R~~ia~~l------~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~ 246 (632)
+.|+.|++++ +++++ +|++|+|+++|+.+++.++ .++||.|++.. .|+. . ...++..|++++.++
T Consensus 72 ~lR~~ia~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~l-~~~gd~vl~~~P~y~~--~---~~~~~~~g~~~~~v~ 143 (382)
T d1b5pa_ 72 ELREALAEKFRRENGLSVTPE--ETIVTVGGSQALFNLFQAI-LDPGDEVIVLSPYWVS--Y---PEMVRFAGGVVVEVE 143 (382)
T ss_dssp HHHHHHHHHHHHTTCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--H---HHHHHHTTCEEEEEE
T ss_pred HHHHHHHhhhhhhcccccccc--cceecCCHHHHHHHHHHHh-CCCCCEEEECCCCcHH--H---HHHHHHhcCeEEEEe
Confidence 5666666665 44554 7999999999999999998 78999977543 4442 2 234567899999998
Q ss_pred ccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCC
Q 006746 247 FSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMD 317 (632)
Q Consensus 247 ~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~ 317 (632)
.+.. ...++.+++++.++++ ++++.++..+|+||..++-+ |+++|+++|++++.|-+..- +....
T Consensus 144 ~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~ 217 (382)
T d1b5pa_ 144 TLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFS 217 (382)
T ss_dssp CCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC
T ss_pred cccccccCCCHHHHHHhCCCC------CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCC
Confidence 7532 3457899988777543 58899999999999999855 56778999999999986432 21111
Q ss_pred CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 318 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 318 ~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
++.+. ..--+++.|+-|.||.+---+|+++..++.++
T Consensus 218 ~~~~~-~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~ 254 (382)
T d1b5pa_ 218 PGRVA-PEHTLTVNGAAKAFAMTGWRIGYACGPKEVIK 254 (382)
T ss_dssp GGGTC-TTTEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred HHHcC-CCCEEEEecchhhccCcHhheEEEEECHHHHH
Confidence 22111 12358888999999962123788887766544
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.43 E-value=9.1e-12 Score=130.23 Aligned_cols=341 Identities=12% Similarity=0.093 Sum_probs=221.9
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch--hHHHHHHHHHHHHHcCCCCCCccE
Q 006746 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~--~~~~~~~R~~ia~~l~a~~~ey~v 192 (632)
++-...|+.|+++....+... |--+.|..++ |++-+ .++..-+.++++++||+. |.-
T Consensus 30 aSEN~~S~~v~~a~~S~l~nk-----------------yaeG~pg~ry-y~G~~~id~iE~la~~ra~~lF~a~---~an 88 (405)
T d1kl1a_ 30 ASENFVSRAVMEAQGSVLTNK-----------------YAEGYPGRRY-YGGCEYVDIVEELARERAKQLFGAE---HAN 88 (405)
T ss_dssp TTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEES-SSCCHHHHHHHHHHHHHHHHHHCCS---EEE
T ss_pred ccCCcCCHHHHHHhcCcccCc-----------------CcCCCCCccc-cCCchhHHHHHHHHHHHHHHHhCCC---cce
Confidence 666789999999977655321 1123444444 44432 566677889999999995 444
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEe----ccccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCc
Q 006746 193 VFTANRTSAFKLLAESYPFMSVKNLLTV----YDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK 268 (632)
Q Consensus 193 vft~naT~al~lv~~sl~~~~gd~ilt~----~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~ 268 (632)
|=.-|++.|.-.+..++ .+|||+|+.. -.|-+.... .. ..-+..++...+++..++.||.+++++.+...+
T Consensus 89 Vqp~SGs~An~av~~al-l~pGD~im~l~l~~GGHlshg~~--~~-~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k- 163 (405)
T d1kl1a_ 89 VQPHSGAQANMAVYFTV-LEHGDTVLGMNLSHGGHLTHGSP--VN-FSGVQYNFVAYGVDPETHVIDYDDVREKARLHR- 163 (405)
T ss_dssp CCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCGGGTCT--TS-HHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-
T ss_pred eeccCchHHHHHHHHHh-cCCCCEEEEeecccccccccCcc--cc-ccceEEEEEEeccchhcccccHHHHHHHHHhhC-
Confidence 55568999999999999 8999998743 234331111 11 122347888889987888999999999988753
Q ss_pred CCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 269 KKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 269 ~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~-----~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
++|+++.... .-..+|++ +.++|++.|+++++|++|.+|. -..|++ ..|++.+|.||.|.. |.
T Consensus 164 ----PklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~----~aDvvt~tThKtlrG-Pr 232 (405)
T d1kl1a_ 164 ----PKLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP----YAHFVTTTTHKTLRG-PR 232 (405)
T ss_dssp ----CSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT----TCSEEEEESSSTTCC-CS
T ss_pred ----cceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh----hhhheeccccccccC-CC
Confidence 6888776654 44567899 8999999999999999987741 123554 469999999995443 87
Q ss_pred ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccc
Q 006746 343 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 422 (632)
Q Consensus 343 G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~ 422 (632)
| |+++.+++..+++....| .|+ .|.++..
T Consensus 233 g-g~I~~~~~~~~~i~~avf-------------------------------------Pg~-------------qggp~~~ 261 (405)
T d1kl1a_ 233 G-GMILCQEQFAKQIDKAIF-------------------------------------PGI-------------QGGPLMH 261 (405)
T ss_dssp C-EEEEECHHHHHHHHHHHT-------------------------------------TTT-------------CSSCCHH
T ss_pred C-ceEEecchhHHHHHhhhC-------------------------------------ccc-------------ccCcchh
Confidence 5 455555544333322111 111 3445555
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEECCCC
Q 006746 423 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 502 (632)
Q Consensus 423 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iygp~~ 502 (632)
.|.++. .+|....+-....-.+++..-++.|-+.|.+. | ++|.+..
T Consensus 262 ~iAa~A------------------------val~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~------G---~~vv~gg- 307 (405)
T d1kl1a_ 262 VIAAKA------------------------VAFGEALQDDFKAYAKRVVDNAKRLASALQNE------G---FTLVSGG- 307 (405)
T ss_dssp HHHHHH------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS-
T ss_pred HHHHHH------------------------HHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC------C---ceeecCC-
Confidence 666665 56555433234556667777777777888776 5 4454421
Q ss_pred CCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCC
Q 006746 503 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 582 (632)
Q Consensus 503 ~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 582 (632)
-...+|...+.+. | +....+++++++.||.+--- .. +.+. +....
T Consensus 308 --Td~H~vlvdl~~~-~--~~g~~ae~~Le~agI~~Nkn---~i-------------------------P~d~--~~~~~ 352 (405)
T d1kl1a_ 308 --TDNHLLLVDLRPQ-Q--LTGKTAEKVLDEVGITVNKN---TI-------------------------PYDP--ESPFV 352 (405)
T ss_dssp --CSSSEEEEECGGG-T--CCHHHHHHHHHHHTEECEEC---CC-------------------------TTCS--SCTTT
T ss_pred --Cccceeecccccc-C--CcHHHHHHHHHHcCeEEcCC---cC-------------------------CCCC--CCCCC
Confidence 1244665555432 2 78888999999999976210 00 1000 01223
Q ss_pred CcEEEEccCCCC----CHHHHHHHHHHHHHhhhh
Q 006746 583 ITVVTASLGYLA----NFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 583 ~~~VRvSlg~~~----t~eDV~rlv~~l~~~l~~ 612 (632)
...||+....+| .++|+.++.++|.+.|+.
T Consensus 353 ~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 353 TSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred CCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 468999987665 689999999999998864
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.43 E-value=9e-12 Score=131.99 Aligned_cols=167 Identities=11% Similarity=0.128 Sum_probs=117.9
Q ss_pred HHHHHHHHHcC------------CCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCC
Q 006746 174 AMKKRIMDFLN------------ISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGA 240 (632)
Q Consensus 174 ~~R~~ia~~l~------------a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~ 240 (632)
+.|+.|+++++ ++++ .|++|+|+++|+.+++.++ .++||+|++. -.|+. ....++..|+
T Consensus 76 ~LReaia~~~~~~~~~~~~~~~~~~~~--~I~it~G~~~al~~~~~~l-~~~Gd~Vlv~~P~y~~-----~~~~~~~~G~ 147 (412)
T d1bw0a_ 76 EAREAVATWWRNSFVHKEELKSTIVKD--NVVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPH-----YETVCKAYGI 147 (412)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH-----HHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCcccccCCCCCCC--eEEEecccccchhhhhhhh-hccccceeeeeccchh-----hhhhhhccCc
Confidence 56777777652 4444 7999999999999999998 7899997754 34542 2345677899
Q ss_pred EEEEEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC---
Q 006746 241 RVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG--- 312 (632)
Q Consensus 241 ~v~~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~--- 312 (632)
+++.++.+.. +...+.+++++.+.++ ++++.++..+|+||..++.+ |++.|+++++++++|.+-..
T Consensus 148 ~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~ 221 (412)
T d1bw0a_ 148 GMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVF 221 (412)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBC
T ss_pred cccccccccccccchhhHHHHhhhhcc------ccccccccccccccccchhhhccccccccccCCeeeechhhHHHhcc
Confidence 9999998632 3356888888776553 58999999999999999866 56778899999999986431
Q ss_pred -CCCCC-----CCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCc
Q 006746 313 -PKDMD-----SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 313 -g~~m~-----~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~ 354 (632)
+.... ..+++....=+++.|+-|.||.+.--+|.+++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~ 269 (412)
T d1bw0a_ 222 KGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG 269 (412)
T ss_dssp CSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred CCCCCccccccccccccccccccccccCccCccCCCCcccccccchhh
Confidence 11000 1111112223667788998886434568888876653
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.42 E-value=6.8e-12 Score=132.55 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=115.1
Q ss_pred HHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 174 AMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+.|+.|++++ |.+.+...|++|+++++++.++..++ ..+||+|++. ..|+. ....++..|++++.++..
T Consensus 74 ~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~-~~~Gd~vlv~~P~y~~-----~~~~~~~~g~~~v~v~~~ 147 (395)
T d1xi9a_ 74 ELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-LDPGDEILVPGPSYPP-----YTGLVKFYGGKPVEYRTI 147 (395)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH-----HHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHhhhhcccccccccccccccccchhhhhhhhhh-cCCCCEEEEcCCcccc-----chhhhhhcCCEEEEEecc
Confidence 4555555554 55444448999999999999999998 6899997654 35542 234467789999998865
Q ss_pred C-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCCCC
Q 006746 249 W-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMDSF 319 (632)
Q Consensus 249 ~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~~l 319 (632)
. .+..++.+++.+.+.++ ++++.++..+|+||..++.+ |+++|+++|++++.|.+-.. +....+.
T Consensus 148 ~~~~~~~d~~~~~~~~~~~------~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 221 (395)
T d1xi9a_ 148 EEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPG 221 (395)
T ss_dssp GGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHH
T ss_pred ccccccchHHHHHHhhccc------ccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchh
Confidence 2 34468999998887654 48999999999999999865 56778999999999986432 1100111
Q ss_pred CCCCCCCcEEEEccccccCCCCCc--eEEEEEeC
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSG--FGCLFVKK 351 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G--~G~L~Vr~ 351 (632)
.+....-=+++.|+-|.||. | | +|.+++..
T Consensus 222 ~~~~~~~vi~~~S~SK~~~~-~-GlRvG~~~~~~ 253 (395)
T d1xi9a_ 222 SLTKDVPVIVMNGLSKVYFA-T-GWRLGYMYFVD 253 (395)
T ss_dssp HHCSSSCEEEEEESTTTTCC-G-GGCCEEEEEEC
T ss_pred hcCCCCCEEEEeCcchhccc-c-hhhcEeeEecC
Confidence 11111112778899999885 3 6 68877643
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.4e-11 Score=129.35 Aligned_cols=340 Identities=12% Similarity=0.106 Sum_probs=219.4
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch--hHHHHHHHHHHHHHcCCCCCCccE
Q 006746 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISENDYGM 192 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~--~~~~~~~R~~ia~~l~a~~~ey~v 192 (632)
++-..+|+.++++....+... |--+.|..++ ||+-+ .++..-+.++.+++||+. |.-
T Consensus 33 aSEN~~S~~v~~a~~S~l~nk-----------------YaeG~pg~Ry-y~G~~~iD~iE~la~~ra~~lF~a~---~an 91 (416)
T d1dfoa_ 33 ASENYTSPRVMQAQGSQLTNK-----------------YAEGYPGKRY-YGGCEYVDIVEQLAIDRAKELFGAD---YAN 91 (416)
T ss_dssp TTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEES-SSCCHHHHHHHHHHHHHHHHHHTCS---EEE
T ss_pred cCcccCCHHHHHHhcCcccCc-----------------ccCCCCCCcc-cCCChhHHHHHHHHHHHHHHHhCCC---cce
Confidence 666789999999977655321 1124444444 44432 566667889999999995 344
Q ss_pred EEeCCHHHHHHHHHhhCCCCCCCeEEEe-c---cccchhhHHHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHhcCc
Q 006746 193 VFTANRTSAFKLLAESYPFMSVKNLLTV-Y---DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK 268 (632)
Q Consensus 193 vft~naT~al~lv~~sl~~~~gd~ilt~-~---d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~ 268 (632)
|-.-|++.|.-.+..++ .+|||+|+.. . .|-+.... .. ...+..++...+++ +++.||.+++++.+...+
T Consensus 92 Vqp~SGs~AN~av~~Al-l~pGD~Il~l~l~~GGHlshg~~--~~-~~g~~~~~~~y~~d-~~~~IDyd~l~~~a~~~k- 165 (416)
T d1dfoa_ 92 VQPHSGSQANFAVYTAL-LEPGDTVLGMNLAHGGHLTHGSP--VN-FSGKLYNIVPYGID-ATGHIDYADLEKQAKEHK- 165 (416)
T ss_dssp CCCSSHHHHHHHHHHHH-CCTTCEEEEECTTTTCCGGGTCT--TS-HHHHHSEEEEECBC-SSSSBCHHHHHHHHHHHC-
T ss_pred eecccCccHHHHHHHHh-cCCCCeeeecccccccccccccc--cc-ccCceEEEEecccC-CccCccHHHHHHHHHHhc-
Confidence 55578999999999998 8999998743 2 23221111 11 12234677777887 578899999999887653
Q ss_pred CCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEccccccCCCCC
Q 006746 269 KKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPS 342 (632)
Q Consensus 269 ~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~-----~m~~ldls~~~~Df~~~S~hK~~G~~P~ 342 (632)
++|+++... .....+|++ +.++|++.|+++++|++|..|. -..|++. .|++.++.||.|.. |.
T Consensus 166 ----PklIi~G~S--~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~----aDvvt~tThKtlrG-Pr 234 (416)
T d1dfoa_ 166 ----PKMIIGGFS--AYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH----AHVVTTTTHKTLAG-PR 234 (416)
T ss_dssp ----CSEEEEECS--SCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT----SSEEEEESSSTTCC-CS
T ss_pred ----cceEEeccc--ccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc----cceeeeehhhcccC-CC
Confidence 688887754 466789999 9999999999999999988741 1235553 59999999995443 86
Q ss_pred ceEEEEEeCCC---ccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCc
Q 006746 343 GFGCLFVKKST---VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL 419 (632)
Q Consensus 343 G~G~L~Vr~~~---~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~ 419 (632)
| |+++.+++- .+++....+ .|+ .|.+
T Consensus 235 g-giI~~~~~~~~~~~~i~~avf-------------------------------------Pg~-------------qggp 263 (416)
T d1dfoa_ 235 G-GLILAKGGSEELYKKLNSAVF-------------------------------------PGG-------------QGGP 263 (416)
T ss_dssp C-EEEEESSCCHHHHHHHHHHHT-------------------------------------TTT-------------CSSC
T ss_pred c-eEEEeccchHhHHHHHHhhhC-------------------------------------ccc-------------ccCc
Confidence 4 555554321 111211100 110 2445
Q ss_pred ccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEEC
Q 006746 420 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYG 499 (632)
Q Consensus 420 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iyg 499 (632)
+...|.++. .+|....+-....-.+++..-++.|.+.|.+. | ++|.+
T Consensus 264 ~~~~iaa~A------------------------val~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~------G---~~iv~ 310 (416)
T d1dfoa_ 264 LMHVIAGKA------------------------VALKEAMEPEFKTYQQQVAKNAKAMVEVFLER------G---YKVVS 310 (416)
T ss_dssp CHHHHHHHH------------------------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGG
T ss_pred cHHHHHHHH------------------------HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC------C---ccccc
Confidence 555566654 55554433234566677777778888888876 5 44543
Q ss_pred CCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccC
Q 006746 500 PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKA 579 (632)
Q Consensus 500 p~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 579 (632)
.. -...+|-+.+.+. | ++...+++++++.||.+-- +.. +.+. +.
T Consensus 311 gg---TdnHlvlvdl~~~-~--~~G~~a~~~Le~~gI~~Nk---n~i-------------------------P~d~--~~ 354 (416)
T d1dfoa_ 311 GG---TDNHLFLVDLVDK-N--LTGKEADAALGRANITVNK---NSV-------------------------PNDP--KS 354 (416)
T ss_dssp GS---CSSSEEEEECGGG-T--CCHHHHHHHHHHTTEECEE---CCC-------------------------TTCS--SC
T ss_pred CC---CCCceeEEEeccc-C--CCHHHHHHHHHHcCeEEeC---CcC-------------------------CCCC--CC
Confidence 21 1244666666542 2 7889999999999998631 000 0000 01
Q ss_pred CCCCcEEEEccCCCC----CHHHHHHHHHHHHHhhhh
Q 006746 580 NLGITVVTASLGYLA----NFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 580 ~~~~~~VRvSlg~~~----t~eDV~rlv~~l~~~l~~ 612 (632)
....+.||+....+| .++|+..+.++|.+.|+.
T Consensus 355 ~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 355 PFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 223568999987666 579999999999988764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=7.9e-12 Score=133.44 Aligned_cols=323 Identities=15% Similarity=0.079 Sum_probs=195.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEec
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
-+++-+..+.|+++.|.+.- ..-.-.++|..+..+.-+......++++... -|++ ...-+...++-.|++|+.++.
T Consensus 107 Lq~l~e~q~~l~eltGmd~~--n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~-~~~v~~t~a~~~g~~vv~v~~ 183 (437)
T d1wyua1 107 LQATFEYQTMIAELAGLEIA--NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPL 183 (437)
T ss_dssp HHHHHHHHHHHHHHHTSSEE--CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCcc--ccCchHHHHHHHHHHHHHHhhhcccccccccccChH-HhhhhhhhcccceeeEEeeec
Confidence 36777899999999987632 1222346666666555554445556665443 4544 455556677889999999988
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccC-CCCCCCCCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALG-PKDMDSFGLSLVR 325 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~-g~~m~~ldls~~~ 325 (632)
+. . ..+.++ +.+ .+.-|.++.. |..|..-+++ +++++|+.|.++++|+...+ +. --.-.+++
T Consensus 184 ~~-~-~~~~~~----~~~------~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~---l~~Pg~~G 247 (437)
T d1wyua1 184 EG-G-RTPLPE----VGE------EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV---LKPPGAYG 247 (437)
T ss_dssp BT-T-BCCCCC----CCT------TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT---BCCHHHHT
T ss_pred cc-c-cchhhh----hcc------ceeEEEEccc-cccccccchHHHHHHhhhccceEEeeechhhhhc---cccccccc
Confidence 62 2 222111 222 3455666655 6789999999 99999999999998875332 11 11224568
Q ss_pred CcEEEEccccccCCCCC-----ceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhc
Q 006746 326 PDFLICSFYQIFGENPS-----GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 400 (632)
Q Consensus 326 ~Df~~~S~hK~~G~~P~-----G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~ 400 (632)
+|+++++ ||-||. |. |.|++.++++....+..+..|-+++.. ....+.. -+.+. ....+++.
T Consensus 248 aDi~~g~-~q~fg~-p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~-G~~~~~l-------~lqtr---eqhIrRek 314 (437)
T d1wyua1 248 ADIAVGD-GQSLGL-PMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVE-GRRGFIL-------TLQAR---EQYIRRAK 314 (437)
T ss_dssp CSEEEEE-CTTTTC-CCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTT-SCEEEEE-------CCGGG---SHHHHGGG
T ss_pred cceEeec-cceecc-ccCCCcCccccccccchhhccccccccccccccC-Cccccee-------ecccc---cccccccc
Confidence 8999999 554443 43 559999999887767665554222110 0000100 01111 01111244
Q ss_pred cccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 006746 401 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 480 (632)
Q Consensus 401 gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~ 480 (632)
+|.++-.- + .+.++. ...-+.++-..||..|.++....++||.++
T Consensus 315 atsnict~-----------q--~l~a~~----------------------a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~ 359 (437)
T d1wyua1 315 AKSNITTN-----------A--QLTALM----------------------GAMYLAALGPEGLREVALKSVEMAHKLHAL 359 (437)
T ss_dssp SSCCCCSC-----------C--HHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhH-----------H--HHHHHH----------------------HHHHhhhcCcccHHHHHHHHHHHHHHHHHH
Confidence 44333210 0 011111 001223333457999999999999999999
Q ss_pred HHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhh
Q 006746 481 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 560 (632)
Q Consensus 481 L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l 560 (632)
|.++ +.++++.+.. .-.- |.+.-. .+...|.+.+.++||..++-.+
T Consensus 360 L~~~--------~g~~~~~~~~---~f~e--f~v~~~----~~~~~i~k~L~d~G~~~~~~~~----------------- 405 (437)
T d1wyua1 360 LLEV--------PGVRPFTPKP---FFNE--FALALP----KDPEAVRRALAERGFHGATPVP----------------- 405 (437)
T ss_dssp HTTS--------TTCEECSCSS---BCSE--EEEECS----SCHHHHHHHHHHTTCCCCEECC-----------------
T ss_pred hhhc--------CCeeccCCCC---eeeE--EEEECC----CCHHHHHHHHHhCCCCCCcccc-----------------
Confidence 9987 5577765431 1122 333311 4778888888788886543100
Q ss_pred hhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 561 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
.....+.+.+++--.+|.||||+|+++|++.|
T Consensus 406 ------------------~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 406 ------------------REYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp ------------------TTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ------------------cCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 11234689999999999999999999999864
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.41 E-value=1.4e-11 Score=131.27 Aligned_cols=359 Identities=14% Similarity=0.104 Sum_probs=224.8
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccch--hHHHHHHHHHHHHHcCCCCCC-cc
Q 006746 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISEND-YG 191 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~--~~~~~~~R~~ia~~l~a~~~e-y~ 191 (632)
++-...|+.|++++...+... |-.+-|..++ |++-+ .++..-+.++++++||++++. |.
T Consensus 38 aSEN~~S~~v~~algS~l~nk-----------------YaeG~pg~Ry-y~G~~~iD~iE~la~~ra~~lF~~~~~~~~a 99 (470)
T d1rv3a_ 38 ASENFASRAVLEALGSCLNNK-----------------YSLGYPGQRY-YGGTEHIDELETLCQKRALQAYGLDPQCWGV 99 (470)
T ss_dssp TTCCCCCHHHHHHHTSGGGTC-----------------CCCEETTEES-SSCCHHHHHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred cCCCcCCHHHHHHhcchhccc-----------------ccCCCCCccc-cCCchhHHHHHHHHHHHHHHHhCCChhhccc
Confidence 566789999999977655321 1113344343 44432 566677889999999997542 33
Q ss_pred EEEeCCHHHHHHHHHhhCCCCCCCeEEEe-c---cccchhhH--HHHHHHHhcCCEEEEEeccCCccccCHHHHHHHHHh
Q 006746 192 MVFTANRTSAFKLLAESYPFMSVKNLLTV-Y---DYESEAVE--AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 265 (632)
Q Consensus 192 vvft~naT~al~lv~~sl~~~~gd~ilt~-~---d~~s~~v~--~~~~~a~~~G~~v~~v~~~~~~~~i~~~~l~~~i~~ 265 (632)
-|=.-|++.|.-.+..++ .++||+|+.. . .|.+.... ........+..++...+++..++.||.+++++....
T Consensus 100 nVqp~SGs~An~av~~al-l~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~ 178 (470)
T d1rv3a_ 100 NVQPYSGSPANFAVYTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL 178 (470)
T ss_dssp ECCCSSHHHHHHHHHHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHh-cCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHh
Confidence 344458999999999998 7999998743 1 34331100 000001123467888899877889999999998876
Q ss_pred cCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCC-----CCCCCCCCCCCCCcEEEEccccccCC
Q 006746 266 KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGP-----KDMDSFGLSLVRPDFLICSFYQIFGE 339 (632)
Q Consensus 266 ~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g-----~~m~~ldls~~~~Df~~~S~hK~~G~ 339 (632)
.+ ++|+++-... .-..+|++ +.++|.+.|+++++|++|.+| .--.||+ ..|++++|.||.|..
T Consensus 179 ~k-----PklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~----~aDvvt~tTHKtlrG 247 (470)
T d1rv3a_ 179 FH-----PKLIIAGTSC--YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLRG 247 (470)
T ss_dssp HC-----CSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGCC
T ss_pred hC-----cceEeechhh--ccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh----eeeeeeeehhhhccC
Confidence 43 6888776653 34567999 999999999999999998774 2123654 359999999995432
Q ss_pred CCCceEEEEEeCCCccccCCCCCC-CceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCC
Q 006746 340 NPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 418 (632)
Q Consensus 340 ~P~G~G~L~Vr~~~~~~L~~~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt 418 (632)
|.| |+++.+++.-. ..+ ..| +.. + +++ ..+. .. -|.+ ..|.
T Consensus 248 -Prg-GiI~~~~~~~~-~~~-~~~~~~~---------~--------~~~-----~~i~---~a--vFPg-------~qgg 289 (470)
T d1rv3a_ 248 -CRA-GMIFYRRGVRS-VDP-KTGKEIL---------Y--------NLE-----SLIN---SA--VFPG-------LQGG 289 (470)
T ss_dssp -CSC-EEEEEECSBCC---------CCB---------C--------CHH-----HHHH---HH--HTTT-------TCCS
T ss_pred -Ccc-eEEEEcccccc-ccc-cccchhH---------H--------HHH-----HHHh---hh--cCcc-------cccc
Confidence 987 88888876532 111 111 000 0 000 0000 00 1111 1356
Q ss_pred cccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEEEE
Q 006746 419 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 498 (632)
Q Consensus 419 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~Iy 498 (632)
|+...|.++. .+|..+..--...-.+++..-++.|.+.|.+. |. +|.
T Consensus 290 ph~~~IAa~A------------------------va~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~------G~---~v~ 336 (470)
T d1rv3a_ 290 PHNHAIAGVA------------------------VALKQAMTPEFKEYQRQVVANCRALSAALVEL------GY---KIV 336 (470)
T ss_dssp CCHHHHHHHH------------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------TC---EEG
T ss_pred chhhHHHHHH------------------------HHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC------Cc---eec
Confidence 7777777776 56655533224555666666777777777776 54 343
Q ss_pred CCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhcccccccccccccc
Q 006746 499 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 578 (632)
Q Consensus 499 gp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 578 (632)
+-. -...++-..+.. .| ++...+++++++.||.+--- +- +.+ .
T Consensus 337 ~gg---TdnHlvlvdl~~-~g--~~g~~ae~~Le~~gI~~Nkn--~i--------------------------P~D---~ 379 (470)
T d1rv3a_ 337 TGG---SDNHLILVDLRS-KG--TDGGRAEKVLEACSIACNKN--TC--------------------------PGD---K 379 (470)
T ss_dssp GGS---CSSSEEEEEGGG-GT--CCHHHHHHHHHHTTEECEEE--CC--------------------------SSC---S
T ss_pred cCC---CCCceEEEeecc-cC--CcHHHHHHHHHHcCcEECCC--cC--------------------------CCC---C
Confidence 221 234566666543 22 78999999999999986310 00 110 0
Q ss_pred CCCCCcEEEEccCCCC----CHHHHHHHHHHHHHhhh
Q 006746 579 ANLGITVVTASLGYLA----NFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 579 ~~~~~~~VRvSlg~~~----t~eDV~rlv~~l~~~l~ 611 (632)
.....+.||+....+| .++|+.++.++|.+.|+
T Consensus 380 ~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 380 SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp CTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1234568999987665 68999999999998775
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.1e-11 Score=131.82 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=115.8
Q ss_pred HHHHHHHHH----cCCCCC-CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDF----LNISEN-DYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~----l~a~~~-ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.|+++ +|.+-+ +..|++|+|+++||.+++..+ ..+|+.|++. ..++. + ...+...|++++.++.
T Consensus 68 ~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l-~~~g~~vlv~~p~~~~--y---~~~~~~~g~~~v~~~~ 141 (418)
T d1w7la_ 68 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-VDEGDEVIIIEPFFDC--Y---EPMTMMAGGRPVFVSL 141 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--H---HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhh-ccCCceeeccccccch--h---HHHHHHcCCEeecccc
Confidence 455555555 466532 236999999999999999999 7899997754 34442 2 2345667999888875
Q ss_pred cCC-----------ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC
Q 006746 248 SWP-----------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG 312 (632)
Q Consensus 248 ~~~-----------~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~ 312 (632)
... +..++.+++.....+ .+++++++..+|+||..++.+ |+++|++++++++.|.+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~ 215 (418)
T d1w7la_ 142 KPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQW 215 (418)
T ss_dssp EECC---CCSEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ccccccccccccccCcccchhhhhccccc------cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 421 223566666554443 468999999999999999765 56778899999999987422
Q ss_pred ----CCCCCC-CCCCCC-CCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 313 ----PKDMDS-FGLSLV-RPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 313 ----g~~m~~-ldls~~-~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+....+ ..+... .--+++.|+-|.++.+...+|+++..++.+..+
T Consensus 216 l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l 266 (418)
T d1w7la_ 216 MVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHL 266 (418)
T ss_dssp CBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHH
T ss_pred hhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhh
Confidence 111011 122222 336889999998775335678888777655443
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=2.5e-11 Score=125.11 Aligned_cols=211 Identities=12% Similarity=0.097 Sum_probs=131.5
Q ss_pred HHHHhhccCcCCCCceEeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHH
Q 006746 95 QIRAKEYYQLSLSNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES 173 (632)
Q Consensus 95 ~iR~~ef~~L~~~~~vyLD~ag~g-l~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~ 173 (632)
.-|+..|..-. ++.+||+-+--. ++|..+++++.+.+.... .+|+ |.. | ..
T Consensus 8 ~~~~~~~~~~~-~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~----~~~y-------------p~~----g------~~ 59 (334)
T d2f8ja1 8 AKRAYPYETEK-RDKTYLALNENPFPFPEDLVDEVFRRLNSDA----LRIY-------------YDS----P------DE 59 (334)
T ss_dssp HHHSCCCCCCC-CCSEECSSCCCSSCCCHHHHHHHHHHCCTTG----GGSC-------------CCS----S------CH
T ss_pred HHhcccccccC-CCceEEECCCCCCCCCHHHHHHHHHHhhcch----hcCC-------------CCC----C------cH
Confidence 34454555433 578999866332 567788887655432110 0000 110 1 13
Q ss_pred HHHHHHHHHcCC---CCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 174 AMKKRIMDFLNI---SENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 174 ~~R~~ia~~l~a---~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
+.|+.|+++++. +++ +|++|+|+++++.+++.. +|+|++. -.|+ .....++..|++++.+|.+
T Consensus 60 ~Lr~aia~~~~~~~v~~d--~I~it~G~~~~l~~l~~~-----~d~v~i~~P~y~-----~~~~~~~~~g~~~v~v~~~- 126 (334)
T d2f8ja1 60 ELIEKILSYLDTDFLSKN--NVSVGNGADEIIYVMMLM-----FDRSVFFPPTYS-----CYRIFAKAVGAKFLEVPLT- 126 (334)
T ss_dssp HHHHHHHHHHTCSSCCGG--GEEEEEHHHHHHHHHHHH-----SSEEEECSSCCH-----HHHHHHHHHTCCEEECCCC-
T ss_pred HHHHHHHHHhcccCCCcc--eEEecCcchhHHHHHhhh-----cccccccccccc-----ccccchhccCCcccccccc-
Confidence 689999999874 444 799999999999998875 4786643 3443 2234556789999999987
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCC-CCCCCCCCCCCCCcE
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGP-KDMDSFGLSLVRPDF 328 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g-~~m~~ldls~~~~Df 328 (632)
+++.... .. ..+++++.++..+|+||..++.+....++++++++++|-+.... ..-........+.-+
T Consensus 127 ~~~~~~~-----~~------~~~~~~l~l~nP~NPtG~~~s~~~l~~~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i 195 (334)
T d2f8ja1 127 KDLRIPE-----VN------VGEGDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLA 195 (334)
T ss_dssp TTSCCCC-----CC------CCTTEEEEEESSCTTTCCCCCHHHHHHHHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEE
T ss_pred ccccccc-----cc------cccceEEEecccccccceeecHHHhhccccceeEEeecccchhhcccccccccccCceEE
Confidence 3333321 01 12458899999999999999998334455678888888653321 100111112223448
Q ss_pred EEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 329 LICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
++.|+-|.+|.+-..+|+++..++.+..+
T Consensus 196 ~~~S~SK~~~~~G~R~G~~~~~~~~i~~l 224 (334)
T d2f8ja1 196 VIRTFSKAFSLAAQRVGYVVASEKFIDAY 224 (334)
T ss_dssp EEEESTTTSSCTTTCEEEEEECHHHHHHH
T ss_pred EEecCccccchhhhhhhhcccchHHHHHH
Confidence 88999998886334678888877766544
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.38 E-value=5.8e-11 Score=125.20 Aligned_cols=172 Identities=11% Similarity=0.023 Sum_probs=128.1
Q ss_pred ccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEE
Q 006746 163 LHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 163 ~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
.|++....-.+...++|+++=|+. ..+.++++-.|+..+..++ .++||+|+............+.....+.|+++
T Consensus 52 ~YsR~~nPT~~~le~~la~LEg~~----~a~~~sSGmaAi~~~~l~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~ 126 (394)
T d1e5ea_ 52 IYTRLGNPTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTI-LKAGDHLISDECLYGCTHALFEHALTKFGIQV 126 (394)
T ss_dssp CBTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEE
T ss_pred eecCCCCHHHHHHHHHHHHHhCCc----ceeeeccchHHHHHHHHhh-cccccccccccceeehhhHhHHHHhhccceee
Confidence 355555556677888999999885 3455678888998888777 68999988765544334556677788999999
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHh-hCCcEEEEeccccCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQ-ENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~-~~g~~vlvDaaq~~g~~m~~ld 320 (632)
.++... +.++++++|+++ ++++.+--.+|++..+.|++ +++.++ ++|+.++||.+=+-|....|++
T Consensus 127 ~~~d~~------d~~~~~~~i~~~------t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~ 194 (394)
T d1e5ea_ 127 DFINTA------IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVD 194 (394)
T ss_dssp EEECTT------STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGG
T ss_pred eccCCC------CHHHHHHhhccc------ccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCchh
Confidence 999764 446788888765 49999999999999999999 888665 5789999999866665445665
Q ss_pred CCCCCCcEEEEccccccCCCCCc-eEEEEEeCCCc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSG-FGCLFVKKSTV 354 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G-~G~L~Vr~~~~ 354 (632)
+++|+++-|.-|.++.+--- .|++.++++.+
T Consensus 195 ---~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~ 226 (394)
T d1e5ea_ 195 ---FGVDVVVHSATKYINGHTDVVAGLICGKADLL 226 (394)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEECHHHH
T ss_pred ---cCCCEEEechhhhcCCCcccccccccchhhHH
Confidence 48999999999977622111 35555555543
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=1.9e-13 Score=143.50 Aligned_cols=163 Identities=13% Similarity=0.054 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEE-Ee-c-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLL-TV-Y-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~il-t~-~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
.++.++..++.|+..+.+ .++.|+++++|+-.+..++ .+++.++ ++ . .|++ .. +.++-.|+++ ++.+
T Consensus 52 ~~~l~~~~~~~~~~~~~e-~~~~~~~~~~a~~~~l~al--~~~~~vi~~~~~~~~~~-~~----~~~~l~g~~~--v~~~ 121 (366)
T d2aeua1 52 AEKVNEYGLKHLGGDEND-KCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPS-IE----RSCKIVNAKY--FESD 121 (366)
T ss_dssp HHHHHHHHHHHHTCCTTE-EEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTH-HH----HHHHHTTCEE--EEES
T ss_pred HHHHHHHHHHHccCCCcc-EEEEeCCHHHHHHHHHHHh--CCCCEEEEecCCCcchh-HH----HHHHhcCCeE--ECCC
Confidence 357788889999987654 6888999999999988886 4666654 33 2 3443 22 3345568775 3332
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCC-ccccchH-HHHHHhhCCcEEEEeccccCCCC--CCCCCCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL-WMRIAQENDWHILIDACALGPKD--MDSFGLSLV 324 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~T-G~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~--m~~ldls~~ 324 (632)
|+++|+++|+++ ++++++.+.+|.+ +...+++ |+++|+++|+++++|.++..+.- ...-..-.+
T Consensus 122 ------d~e~l~~~i~~~------tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~ 189 (366)
T d2aeua1 122 ------KVGEILNKIDKD------TLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL 189 (366)
T ss_dssp ------CHHHHHTTCCTT------EEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH
T ss_pred ------CHHHHHHhcCCC------ceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhc
Confidence 678888888765 4899998887754 4567899 99999999999999998754320 001111245
Q ss_pred CCcEEEEccccccCCCCCceEEEEEeCCCccccC
Q 006746 325 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 358 (632)
Q Consensus 325 ~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~ 358 (632)
++|++++|++|.+|. | +.|+++.+++.++.+.
T Consensus 190 ~~di~~~S~sK~~~g-~-~~G~i~~~~~~i~~~~ 221 (366)
T d2aeua1 190 GADLVVTSTDKLMEG-P-RGGLLAGKKELVDKIY 221 (366)
T ss_dssp TCSEEEEETTSSSSS-C-SCEEEEEEHHHHHHHH
T ss_pred CceEEEecccccccc-c-ceeEEEecHHHHHHHH
Confidence 789999999998873 4 7899999998876553
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.37 E-value=4.9e-11 Score=126.64 Aligned_cols=356 Identities=13% Similarity=0.123 Sum_probs=211.6
Q ss_pred CCCCCCCHHHHHHHhcCCCC-CCCCCCCCCCCCccccccccccccccccccccc--hhHHHHHHHHHHHHHcCCCCCCcc
Q 006746 115 FGIGLFSYNQLHKQESSPSH-LRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ--ESGLESAMKKRIMDFLNISENDYG 191 (632)
Q Consensus 115 ag~gl~~~~~~~a~~~~~~~-~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~--~~~~~~~~R~~ia~~l~a~~~ey~ 191 (632)
++-...|+.|++++...+.. .+. +.|..++ |++- ..++..-++++++++||++..++.
T Consensus 34 aSEN~~S~~v~~algS~l~nkYae------------------G~pg~Ry-y~G~~~iD~iE~la~~ra~~lF~~~~a~w~ 94 (463)
T d2a7va1 34 ASENFCSRAALEALGSCLNNKYSE------------------GYPGKRY-YGGAEVVDEIELLCQRRALEAFDLDPAQWG 94 (463)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCC------------------C-------------CTHHHHHHHHHHHHHTTCCTTTEE
T ss_pred ccCCcCCHHHHHHhcchhcccccC------------------CCCCccc-cCCchhHHHHHHHHHHHHHHHhCCCchhcc
Confidence 56678999999998765532 122 3343333 4433 256777789999999999865433
Q ss_pred E-EEeCCHHHHHHHHHhhCCCCCCCeEEE-ec---cccchhhHHHHHHH--HhcC--CEEEEEeccCCccccCHHHHHHH
Q 006746 192 M-VFTANRTSAFKLLAESYPFMSVKNLLT-VY---DYESEAVEAMIRTS--EKRG--ARVMSAEFSWPRLRINSEKLRKM 262 (632)
Q Consensus 192 v-vft~naT~al~lv~~sl~~~~gd~ilt-~~---d~~s~~v~~~~~~a--~~~G--~~v~~v~~~~~~~~i~~~~l~~~ 262 (632)
| |=.-|++.|.-.+..++ .+|||+|+. .. .|-+. ..+.... .-.| .++....++..++.||.+++++.
T Consensus 95 vNVqp~SGs~An~av~~al-l~pgD~Im~l~l~~GGHlsh--g~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~ 171 (463)
T d2a7va1 95 VNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTH--GYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALT 171 (463)
T ss_dssp EECCCSSHHHHHHHHHHHH-CCSCEECCC---------------------------------CCBCTTTCSBCHHHHHHH
T ss_pred CCccccccHHHHHHHHHHH-cCCCceEEeeccCcCccccc--ccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHH
Confidence 2 33457888888888888 899999762 22 34332 1111100 0112 23444455667788999999999
Q ss_pred HHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccc-
Q 006746 263 VVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQ- 335 (632)
Q Consensus 263 i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~-----~m~~ldls~~~~Df~~~S~hK- 335 (632)
....+ ++|+++-... .-..+|++ +.++|++.|+++++|++|.+|. --.|++ ..|++.+|.||
T Consensus 172 a~~~k-----PklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~----~aDvvt~tTHKT 240 (463)
T d2a7va1 172 ARLFR-----PRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKT 240 (463)
T ss_dssp HHHHC-----CSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGG
T ss_pred HhhcC-----CceEEecccc--cccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh----hhhhhhchhhhh
Confidence 88753 6888876653 34567999 9999999999999999987742 113554 36999999999
Q ss_pred ccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhhccccCCCccchhhhhh
Q 006746 336 IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 415 (632)
Q Consensus 336 ~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~ 415 (632)
+.| |. -|+++.+++... ..+.. |... .+ +++ .++. .. -|.+ .
T Consensus 241 lrG--Pr-gGiIl~~~~~~~-~~~~~--~~~~-------~~--------~~~-----~~i~---~a--vFPg-------~ 282 (463)
T d2a7va1 241 LRG--AR-SGLIFYRKGVKA-VDPKT--GREI-------PY--------TFE-----DRIN---FA--VFPS-------L 282 (463)
T ss_dssp GCS--CS-CEEEEEECSEEE-EETTT--EEEE-------EC--------CCH-----HHHH---HH--HTTT-------T
T ss_pred hcC--CC-ceEEEEcccccc-ccccc--Cccc-------hh--------HHH-----HHhh---hh--cCcc-------c
Confidence 556 87 466677765422 11110 0000 00 000 0010 00 1111 1
Q ss_pred cCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcE
Q 006746 416 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV 495 (632)
Q Consensus 416 ~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v 495 (632)
.|.|+...|.++. .+|....+-....-.+++..-++.|-+.|.+. |.
T Consensus 283 qggph~h~iAa~A------------------------va~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~------G~--- 329 (463)
T d2a7va1 283 QGGPHNHAIAAVA------------------------VALKQACTPMFREYSLQVLKNARAMADALLER------GY--- 329 (463)
T ss_dssp CCSCCHHHHHHHH------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------TC---
T ss_pred chhhhhhhHHHHH------------------------HHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC------CC---
Confidence 3566777777776 66665544335566677777777788888876 54
Q ss_pred EEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccc
Q 006746 496 KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 575 (632)
Q Consensus 496 ~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 575 (632)
+|.+.. -...+|-+.+.+ .| ++...+++.+++.||.+--- . .+.+
T Consensus 330 ~vv~gg---TdnHlvlvdl~~-~~--~~G~~ae~~Le~~gI~~Nkn---~-------------------------iP~D- 374 (463)
T d2a7va1 330 SLVSGG---TDNHLVLVDLRP-KG--LDGARAERVLELVSITANKN---T-------------------------CPGD- 374 (463)
T ss_dssp EEGGGS---CSSSEEEEECTT-TT--CCHHHHHHHHHHTTEECEEE---C-------------------------CTTC-
T ss_pred eeecCC---CCCceeeeeccc-cC--CCHHHHHHHHHhccCccCCc---c-------------------------CCCC-
Confidence 444322 134466666543 22 78899999999999987310 0 0110
Q ss_pred cccCCCCCcEEEEccCCCC----CHHHHHHHHHHHHHhhh
Q 006746 576 KDKANLGITVVTASLGYLA----NFEDVYRLWAFVAQFLD 611 (632)
Q Consensus 576 ~~~~~~~~~~VRvSlg~~~----t~eDV~rlv~~l~~~l~ 611 (632)
+.....+.||+....+| .++|+..+.++|.+.|+
T Consensus 375 --~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 375 --RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp --CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 12234568999987776 57999999999988775
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.36 E-value=3.2e-11 Score=130.10 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEecc-
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFS- 248 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~- 248 (632)
.-+.+..++++++||.+ .++||+++|.|..++..++ .++||+|+....+++ +... ....|+....+..+
T Consensus 75 pt~~~lE~~~a~l~G~e----~al~~~SGt~An~~a~~~l-~~~Gd~Vi~~~~f~~----~~~~-i~~~g~~~~~~~~~~ 144 (456)
T d1c7ga_ 75 ENFYHLEKTVKELFGFK----HIVPTHQGRGAENLLSQLA-IKPGQYVAGNMYFTT----TRFH-QEKNGATFVDIVRDE 144 (456)
T ss_dssp HHHHHHHHHHHHHHCCS----EEEEESSHHHHHHHHHHHH-CCTTEEEEESSCCHH----HHHH-HHHTTEEEEECBCGG
T ss_pred chHHHHHHHHHHHhCCC----eEEECCCHHHHHHHHHHHh-cCCCCeEecCcchHH----HHHH-HHHcCceeeeccccc
Confidence 44568899999999996 4789999999999999988 789998876544332 2122 24467777655432
Q ss_pred --------CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCc-cccc---hH-HHHHHhhCCcEEEEeccccCCC-
Q 006746 249 --------WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYP---YL-WMRIAQENDWHILIDACALGPK- 314 (632)
Q Consensus 249 --------~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG-~~~p---l~-i~~~a~~~g~~vlvDaaq~~g~- 314 (632)
...+.+|.++|++.|++++ +..+.++++....|..| ..+| ++ |.++|+++|+.+++|+|++++.
T Consensus 145 ~~~~~~~~~~~~~~d~~~le~~I~~~~--~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a 222 (456)
T d1c7ga_ 145 AHDASLNLPFKGDIDLNKLATLIKEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENA 222 (456)
T ss_dssp GGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred cccccccCCccccCCHHHHHHHhhhcC--CccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcch
Confidence 1246789999999998765 34567888888777765 4444 45 6789999999999999986531
Q ss_pred --------CCCCCCCCC------CCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 315 --------DMDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 315 --------~m~~ldls~------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
.....++.. -.+|.+++|.+|.+|. |.| |+++.+++
T Consensus 223 ~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~-~~G-G~i~~~~~ 272 (456)
T d1c7ga_ 223 YFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLV-NIG-GFLCMNDE 272 (456)
T ss_dssp HHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC-SSC-EEEEESCH
T ss_pred hhhcccccccCCCChhhhccccccccccEEEeccccccc-cce-eEEEcCCH
Confidence 000111100 1369999999998875 544 66666654
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.35 E-value=5.9e-11 Score=125.95 Aligned_cols=172 Identities=8% Similarity=0.018 Sum_probs=117.2
Q ss_pred HHHHHHHHHc----CCCCC-CccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDFL----NISEN-DYGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~-ey~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.|++++ |.+-+ ..+|++|+|+++|+.+++.++ ..+||.|++. ..|+. . ...++..|++++.+++
T Consensus 70 ~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l-~~~gd~vlv~~P~y~~--~---~~~~~~~g~~~~~v~~ 143 (418)
T d2r5ea1 70 RLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-VDEGDEVIIIEPFFDC--Y---EPMVKAAGGIPRFIPL 143 (418)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--H---HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhc-cccccceeccccccch--h---hHHHHHcCCeEEEEEe
Confidence 4566666554 54422 237999999999999999998 7899997654 46664 2 2345668999999988
Q ss_pred cCCc---------cccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC--
Q 006746 248 SWPR---------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-- 312 (632)
Q Consensus 248 ~~~~---------~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-- 312 (632)
+... ...+.+++.+.... .+++++++..+|+||..++.+ |+++|+++|++++.|.+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~ 217 (418)
T d2r5ea1 144 KPNKTGGTISSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMV 217 (418)
T ss_dssp EESCCSSCEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred cccccccchhhhhhhhhHHHHhhhhhc------cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhc
Confidence 6322 23556666665443 469999999999999999866 56778999999999997533
Q ss_pred --CCCCCC-CCCCC-CCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 313 --PKDMDS-FGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 313 --g~~m~~-ldls~-~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
+....+ ..+.. ...-.++.|+-|.+|.+.--+|+++..++.++.+
T Consensus 218 ~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~ 266 (418)
T d2r5ea1 218 FEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNL 266 (418)
T ss_dssp CTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHH
T ss_pred cCCCccccccccccccceeeeeecCCccccCCCcccccccccchhhhhh
Confidence 111011 11111 2234778899998886334568888776655433
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.35 E-value=1.1e-10 Score=122.97 Aligned_cols=168 Identities=13% Similarity=0.126 Sum_probs=112.6
Q ss_pred HHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 174 AMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+.|+.|++++ |.+.+..+|+.|+|+++|+.+++.++ .++||+|++.. .++. . ....+..|++.+.++..
T Consensus 70 ~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~-~~pgd~vi~~~p~~~~-~----~~~~~~~g~~~v~~~~~ 143 (394)
T d1c7na_ 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYP-F----FMAIKNQERKIIECELL 143 (394)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTH-H----HHHHHTTTCEEEECCCE
T ss_pred HHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccc-cccccccccccCcccc-h----hhHHhhhhhcccccccc
Confidence 4566666654 55433448999999999999999998 78999977643 4442 1 23345678887777654
Q ss_pred C--CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC----CCCCCC
Q 006746 249 W--PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMDS 318 (632)
Q Consensus 249 ~--~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~----g~~m~~ 318 (632)
. ....++.+.++.++..+ ++++++++..+|+||..++.+ |+++|+++++++++|-+-.- +....+
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~ 218 (394)
T d1c7na_ 144 EKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV 218 (394)
T ss_dssp EETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC
T ss_pred cccccccchhhhhhhhhccc-----cceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccc
Confidence 2 23346778877766532 468999999999999999865 56788999999999986421 110001
Q ss_pred ---CCCCCCCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 319 ---FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 319 ---ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
........-+++.|+-|.||.+.-.+|.+++.+.
T Consensus 219 ~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~ 255 (394)
T d1c7na_ 219 FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNP 255 (394)
T ss_dssp GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCH
T ss_pred hhhhhcccccceeecccccccccccccccccccccCh
Confidence 1111123457788999988863334456665543
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.34 E-value=2e-10 Score=121.02 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=120.1
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
|++....-.+...++|+++-|+. ..+.++++..|+..+..++ .++||+|+....-.......+....++.|+++.
T Consensus 61 Y~R~~nPt~~~LE~~la~LEgg~----~a~~~sSGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~ 135 (398)
T d1qgna_ 61 YGRYGNPTTVVLEEKISALEGAE----STLLMASGMCASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITAT 135 (398)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred ecCCCChHHHHHHHHHHHHhCCc----eEEEecCcchHHHHHHhhc-ccccccccccccccchhhhhhcccccccccccc
Confidence 44444455567888999998874 4667789999999988887 689999886654443356666777788999998
Q ss_pred EEeccCCccccCHHHHHH-HHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRK-MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGL 321 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~-~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ldl 321 (632)
.+... +.++..+ .+.++ ++++.+-..+|++....|++ |+++||++|+.++||.+=.-|....||+
T Consensus 136 ~~~~~------~~~~~~~~~~~~~------t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~- 202 (398)
T d1qgna_ 136 VIDPA------DVGALELALNQKK------VNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALA- 202 (398)
T ss_dssp EECSS------CHHHHHHHHHHSC------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTT-
T ss_pred ccccc------chhhhhhhhcccc------ceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchh-
Confidence 88642 3344444 34443 59999999999999999999 9999999999999999865565334665
Q ss_pred CCCCCcEEEEccccccCC
Q 006746 322 SLVRPDFLICSFYQIFGE 339 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~ 339 (632)
+++|+++-|.-|.+|.
T Consensus 203 --~GaDiVihS~TKy~~G 218 (398)
T d1qgna_ 203 --LGADLVLHSATKFLGG 218 (398)
T ss_dssp --TTCSEEEECTTTTTTC
T ss_pred --hCCCEEEEechhhcCc
Confidence 4899999999997773
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=2.8e-10 Score=119.37 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=126.7
Q ss_pred cccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCE
Q 006746 162 LLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 162 ~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
+.|++....-.+...++|+++=|+. ..+.++++-.|+..+..++ .++||+|+............+....++.|.+
T Consensus 42 ~~Y~R~~nPt~~~le~~la~LEgg~----~a~~~sSGMaAi~~~l~~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~ 116 (384)
T d1cs1a_ 42 HDYSRRGNPTRDVVQRALAELEGGA----GAVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYR 116 (384)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCE
T ss_pred CcccCCCCHHHHHHHHHHHHHhCCC----ceEEecChHHHHHHHHhhc-ccccceecccccccchhhhhhhhhhcccccc
Confidence 3466666677778899999999874 3566778888999888887 6899998876544443556667777778888
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
+.++.. .+.+++++++.++| ++|.+--.+|++....|++ |+++||++|+.++||.+-+.|....|++
T Consensus 117 ~~~~d~------~d~~~~~~~~~~~t------~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~ 184 (384)
T d1cs1a_ 117 VLFVDQ------GDEQALRAALAEKP------KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLA 184 (384)
T ss_dssp EEEECT------TCHHHHHHHHHTCC------SEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG
T ss_pred cccccC------CCHHHHHhhccccc------cEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccccc
Confidence 887754 36788999998865 8999999999999999999 9999999999999999866665445665
Q ss_pred CCCCCCcEEEEccccccC
Q 006746 321 LSLVRPDFLICSFYQIFG 338 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G 338 (632)
+++|+++-|.-|.++
T Consensus 185 ---~GaDiVvhS~TKyi~ 199 (384)
T d1cs1a_ 185 ---LGADLVLHSCTKYLN 199 (384)
T ss_dssp ---GTCSEEEEETTTTTT
T ss_pred ---cCCCEEEEccccccc
Confidence 489999999999776
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=8.3e-11 Score=122.64 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEeccC
Q 006746 171 LESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFSW 249 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~~ 249 (632)
+.+.+.+.+.+..+.+-+...|++|+++++|+.+++.++ ..+||+|++.. .|+. . .......|..+..++.+.
T Consensus 70 lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~vlv~~P~y~~--~---~~~~~~~~~~~~~~~~~~ 143 (375)
T d1o4sa_ 70 LREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-LDPGDEVIVFSPVWVS--Y---IPQIILAGGTVNVVETFM 143 (375)
T ss_dssp HHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--H---HHHHHHTTCEEEEEECCG
T ss_pred HHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHH-hCCCCEEEEccCcccc--c---hhhhhccccccccccccc
Confidence 333344444444455544558999999999999999999 68999976543 4442 1 223456788888887753
Q ss_pred C-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCC-C---CCCCC
Q 006746 250 P-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPK-D---MDSFG 320 (632)
Q Consensus 250 ~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~-~---m~~ld 320 (632)
. ...++.+.++....+ ++++++++..+|+||..++.+ |+++|++++++++.|.+...-. + ...+.
T Consensus 144 ~~~~~~~~~~~~~~~~~------~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~ 217 (375)
T d1o4sa_ 144 SKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILD 217 (375)
T ss_dssp GGTTCCCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHH
T ss_pred cccccchhHHHHHhhcc------CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccccccccc
Confidence 3 334566666554433 468999999999999999866 4567899999999998543311 0 00111
Q ss_pred -CCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 321 -LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 321 -ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
....+-=+++.|+-|.||.+---+|.++..+..++.+.... .
T Consensus 218 ~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~-------------------------------------~ 260 (375)
T d1o4sa_ 218 VSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQ-------------------------------------S 260 (375)
T ss_dssp HCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHH-------------------------------------H
T ss_pred ccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhh-------------------------------------c
Confidence 12344568899999988853234577765554433221100 0
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
..+ .+.+.+... .+....+ .-...+.++.+.-.+++.+
T Consensus 261 ~~~----------------~~~~~~~~~-------------------------~~~~~~~-~~~~~~~~~~~~r~~~~~~ 298 (375)
T d1o4sa_ 261 HTT----------------SCINTVAQY-------------------------AALKALE-VDNSYMVQTFKERKNFVVE 298 (375)
T ss_dssp HHT----------------CSCCHHHHH-------------------------HHHHHTT-CCCHHHHHHHHHHHHHHHH
T ss_pred ccc----------------ccccccchh-------------------------hhhhhcc-cchhhhHHHHHHHHHHHHH
Confidence 000 000000000 1122222 2244555666666777788
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
.|.++ | ++++.|. -|..+-+.+.. -+.+.+.+++.++||.++.|..+.
T Consensus 299 ~l~~~------g---~~~~~p~----gg~f~~~~~~~-----~~~~~~~~ll~~~gV~v~pG~~F~-------------- 346 (375)
T d1o4sa_ 299 RLKKM------G---VKFVEPE----GAFYLFFKVRG-----DDVKFCERLLEEKKVALVPGSAFL-------------- 346 (375)
T ss_dssp HHHHT------T---CCCCCCS----BSSEEEEECSS-----CHHHHHHHHHHHHCEECEEGGGGT--------------
T ss_pred HHHhc------C---ceEecCC----ccEEEEEECCC-----CHHHHHHHHHHhCCEEEEEccccC--------------
Confidence 88776 4 3333332 23344444543 356778899999999998763221
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
..+.||+|++ ++.|++...++.|++||++
T Consensus 347 ----------------------~~g~iRis~~--~~~e~l~~al~rl~~~l~~ 375 (375)
T d1o4sa_ 347 ----------------------KPGFVRLSFA--TSIERLTEALDRIEDFLNS 375 (375)
T ss_dssp ----------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHTC
T ss_pred ----------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHhcC
Confidence 2358999986 5899999999999999874
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.32 E-value=3e-10 Score=119.10 Aligned_cols=169 Identities=9% Similarity=0.077 Sum_probs=125.2
Q ss_pred cccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCE
Q 006746 162 LLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 162 ~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
+.|++....-.+...++|+.+=|+. +.+ .++++-.|+..+.. + .++||+|+...........-+.....+.|++
T Consensus 41 ~~Y~R~~nPt~~~le~~la~LE~~~---~a~-~fsSGMaAisall~-l-l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~ 114 (380)
T d1ibja_ 41 YDYTRSGNPTRDALESLLAKLDKAD---RAF-CFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 114 (380)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTCS---EEE-EESSHHHHHHHHHT-T-SCTTCEEEEESSCCHHHHHHHHHTSGGGTCE
T ss_pred ceeeCCCChHHHHHHHHHHHHcCCc---eEE-ehhhHHHHHHHHHH-h-hCCCCEEEEEecccccccchhhhhhcccccc
Confidence 3466665666678889999999874 244 45666778876654 4 5899998866554443444555666778999
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
+..+... +.++++++|+++ ++++.+-..+|++....|++ |+++||++|+.++||.+-+.|....|++
T Consensus 115 ~~~~d~~------~~~~~~~ai~~~------t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~ 182 (380)
T d1ibja_ 115 VKRVNTT------KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE 182 (380)
T ss_dssp EEEECTT------SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG
T ss_pred ccccCcc------hHHHHHHHhccC------ccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccccccc
Confidence 9887653 567888888664 59999999999999999999 9999999999999999866665435665
Q ss_pred CCCCCCcEEEEccccccCCCCC-ceEEEEEeC
Q 006746 321 LSLVRPDFLICSFYQIFGENPS-GFGCLFVKK 351 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~-G~G~L~Vr~ 351 (632)
+++|+++-|.-|+++.+-- -.|++.+++
T Consensus 183 ---~GaDiVvhS~TKyi~GhsDv~~G~v~~~~ 211 (380)
T d1ibja_ 183 ---LGADIVMHSATKFIAGHSDVMAGVLAVKG 211 (380)
T ss_dssp ---TTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred ---cCCCEEEecccceeccccCccccccccch
Confidence 4899999999997663222 234445553
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=7.3e-11 Score=123.74 Aligned_cols=170 Identities=10% Similarity=0.119 Sum_probs=117.1
Q ss_pred HHHHHHHHH----cCCCCCC-ccEEEeCCHHHHHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEec
Q 006746 174 AMKKRIMDF----LNISEND-YGMVFTANRTSAFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEF 247 (632)
Q Consensus 174 ~~R~~ia~~----l~a~~~e-y~vvft~naT~al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~ 247 (632)
+.|+.|+++ .|.+.+. ..|+.|+++++|+.+++.++ ..+||.|++. ..++. . .......|+.+..++.
T Consensus 67 ~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l-~~~gd~vl~~~p~y~~--~---~~~~~~~g~~~~~~~~ 140 (382)
T d1u08a_ 67 ALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-VRNGDEVICFDPSYDS--Y---APAIALSGGIVKRMAL 140 (382)
T ss_dssp HHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT--H---HHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhc-ccccceEEEecccccc--h---hhhhhhccccceeccc
Confidence 456666655 4654332 25999999999999999998 6889997653 45553 1 2344668888888888
Q ss_pred cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccCCC--CCCCCCC
Q 006746 248 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPK--DMDSFGL 321 (632)
Q Consensus 248 ~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~g~--~m~~ldl 321 (632)
+.....+|.+++++.+.++ ++++.++..+|+||+.++.+ |++.++++++.++.|.....-. .......
T Consensus 141 ~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~ 214 (382)
T d1u08a_ 141 QPPHFRVDWQEFAALLSER------TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASV 214 (382)
T ss_dssp CTTTCCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCG
T ss_pred ccccccCCHHHHhhhhccC------ccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccc
Confidence 7666778899988876654 58899999999999999876 4566788999999988643211 0011111
Q ss_pred CC----CCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 322 SL----VRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 322 s~----~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
.. ..--+++.|+-|.++.+...+|.++..++.++
T Consensus 215 ~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~ 252 (382)
T d1u08a_ 215 LAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISA 252 (382)
T ss_dssp GGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHH
T ss_pred cccccccCcEEEEeeccccccCCcccchhhhccchhHH
Confidence 00 11248899999988863245688777665543
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=3e-11 Score=126.75 Aligned_cols=167 Identities=12% Similarity=0.118 Sum_probs=110.4
Q ss_pred HHHHHHHHHc----CCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCEEEEEecc
Q 006746 174 AMKKRIMDFL----NISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGARVMSAEFS 248 (632)
Q Consensus 174 ~~R~~ia~~l----~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~v~~v~~~ 248 (632)
+.|+.|++++ |.+-+...|++|+|+++++.++...+ ..+|+.|++.. .++. . ...++..|+.+..++.+
T Consensus 68 ~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l-~~~gd~V~i~~P~y~~--~---~~~~~~~g~~~~~~~~~ 141 (389)
T d2gb3a1 68 ELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI-ANPGDEILVLEPFYAN--Y---NAFAKIAGVKLIPVTRR 141 (389)
T ss_dssp HHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--H---HHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCcccceEEeccccccccccccccc-ccCCCeEEEeCCCCcc--c---cccccccCccccccccc
Confidence 5566666554 54433337999999999999999998 68899976543 4432 2 23456779999999887
Q ss_pred CCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CCC--CCCCCC
Q 006746 249 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PKD--MDSFGL 321 (632)
Q Consensus 249 ~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~~--m~~ldl 321 (632)
......+.+.+...+. ++++++.++..+|+||..++.+ |+++|++++++++.|-+... ..+ +.+.-.
T Consensus 142 ~~~~~~~~~~~~~~~~------~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~ 215 (389)
T d2gb3a1 142 MEEGFAIPQNLESFIN------ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALS 215 (389)
T ss_dssp GGGTSCCCTTGGGGCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGG
T ss_pred cccccchhhhhhhhcc------cCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccc
Confidence 4444444444433332 3568999999999999999844 67889999999999986432 111 011111
Q ss_pred CCCCCcEEEEccccccCCCCCceEEEEEeCC
Q 006746 322 SLVRPDFLICSFYQIFGENPSGFGCLFVKKS 352 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~ 352 (632)
....-.+++.|+-|.++.+---+|+++..+.
T Consensus 216 ~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~ 246 (389)
T d2gb3a1 216 IESDKVVVIDSVSKKFSACGARVGCLITRNE 246 (389)
T ss_dssp SCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred cccccccccccccccccCcccceeeeeccch
Confidence 1224467888888977752123577776554
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.25 E-value=9.7e-11 Score=120.86 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=116.8
Q ss_pred HHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEEEEeccCCcccc
Q 006746 175 MKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRI 254 (632)
Q Consensus 175 ~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~~~i 254 (632)
..++++++-|+. ..+.++++..|+..+..++ .++||+|+...+-.......+.+..++.|+++.+++..
T Consensus 3 LE~~la~Leg~~----~a~~~sSGMaAi~~~l~~l-l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~------ 71 (331)
T d1pffa_ 3 LEGKIAKLEHAE----ACAATASGMGAIAASVWTF-LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA------ 71 (331)
T ss_dssp HHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT------
T ss_pred HHHHHHHHhCCC----eEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc------
Confidence 456788888874 3455688899988877777 68999987655433234555667778999999998653
Q ss_pred CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHH-HhhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 006746 255 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRI-AQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS 332 (632)
Q Consensus 255 ~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~-a~~~g~~vlvDaaq~~g~~m~~ldls~~~~Df~~~S 332 (632)
+.+.++++++++ ++++.+--.+|++....|++ ++++ +|++|+.++||-+=.-|....|++ +++|+++-|
T Consensus 72 d~~~~~~~i~~~------t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~---~GaDiVv~S 142 (331)
T d1pffa_ 72 VPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLD---LGVDIVVHS 142 (331)
T ss_dssp STTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGG---GTCSEEEEE
T ss_pred chhhHhhhcccc------cceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccc---cCCCEEEec
Confidence 556788877664 59999999999999999999 8987 577899999998755443224665 478999999
Q ss_pred cccccCCCCCce-EEEEEeCCC
Q 006746 333 FYQIFGENPSGF-GCLFVKKST 353 (632)
Q Consensus 333 ~hK~~G~~P~G~-G~L~Vr~~~ 353 (632)
.-|.++.+---+ |+++++++.
T Consensus 143 ~TKy~~Gh~d~~~G~v~~~~~~ 164 (331)
T d1pffa_ 143 ATKYINGHTDVVAGLVCSRADI 164 (331)
T ss_dssp TTTTTSSSSSCCCEEEEECHHH
T ss_pred chhhcCCCCccccccccccccc
Confidence 999765322222 555555443
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=1.8e-09 Score=114.29 Aligned_cols=171 Identities=11% Similarity=0.032 Sum_probs=122.6
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
|++....-.+...++|+++=|+. ..+.++++-.|+..+..++ .++||+|+...+-.......+.....+.|+++.
T Consensus 52 YsR~~nPT~~~LE~~la~LE~~~----~a~~~~SGmaAi~~~~~~l-~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~ 126 (421)
T d2ctza1 52 YSRIMNPTVDVLEKRLAALEGGK----AALATASGHAAQFLALTTL-AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVR 126 (421)
T ss_dssp CBTTBCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEE
T ss_pred ecCCCCHHHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHhh-cccccceeecCCcCCchhHHHHHHHhhccccce
Confidence 44444455567888899998875 2445567778888877777 689999887654443345555667789999998
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEecccc-CCCCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACAL-GPKDMDSFGL 321 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~-~g~~m~~ldl 321 (632)
.+..+ -..+.+++.++++ ++||.+--.+|++....||+ |+++||++|+.++||-+=+ .|....||+
T Consensus 127 ~~d~~-----~~~~~~~~~~~~~------t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~- 194 (421)
T d2ctza1 127 FTSRE-----ERPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLA- 194 (421)
T ss_dssp ECCTT-----CCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGG-
T ss_pred ecccc-----cCcchhccccCCC------ceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccc-
Confidence 87542 1334555555544 59999999999999999999 9999999999999998744 354224665
Q ss_pred CCCCCcEEEEccccccCCCCCce-EEEEEeCCC
Q 006746 322 SLVRPDFLICSFYQIFGENPSGF-GCLFVKKST 353 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~G~~P~G~-G~L~Vr~~~ 353 (632)
+++|+++-|.-|.+|.+---+ |++..+++.
T Consensus 195 --~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~ 225 (421)
T d2ctza1 195 --WGAALVTHSLTKWVGGHGAVIAGAIVDGGNF 225 (421)
T ss_dssp --GTCSEEEEETTTTTTCSSCCCCEEEEECSCS
T ss_pred --cCCcEEEEechhhccCCCCeEEEEEEcCCcc
Confidence 489999999999665333344 444445443
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=2.5e-09 Score=112.35 Aligned_cols=166 Identities=10% Similarity=0.001 Sum_probs=122.6
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 164 HGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 164 ~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
|++....-.+...++++++=|+. ..+.++++-.|+..+..++ .++||+|+....-......-+.+...+.|+++.
T Consensus 52 Y~R~~nPt~~~le~~la~LEg~~----~a~~~~SGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~ 126 (391)
T d1cl1a_ 52 YGRRGTLTHFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTS 126 (391)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred eECCCChhHHHHHHHHHHHhCCc----cEEEeccccceeeehhhcc-cCCCCeEEEecccccchhhhhhhcccccccccc
Confidence 44433445567788899988874 4667789999999888877 689999886654443345555666788999999
Q ss_pred EEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhh--CCcEEEEeccccCCCCCCCCC
Q 006746 244 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQE--NDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 244 ~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~--~g~~vlvDaaq~~g~~m~~ld 320 (632)
.+... +.++++++++++ ++++.+-..+|++....|++ |+++|++ +|+.++||-+=+-|....||+
T Consensus 127 ~~d~~------d~~~~~~~i~~~------t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~ 194 (391)
T d1cl1a_ 127 WFDPL------IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALD 194 (391)
T ss_dssp EECTT------CGGGGGGTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGG
T ss_pred cccCc------cccccccccccc------cceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhcccc
Confidence 88653 345666666554 59999999999999999999 9999976 599999999866665434665
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEE
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFV 349 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~V 349 (632)
+++|+++-|.-|+++.+---+|..+|
T Consensus 195 ---~GaDivvhS~TKy~~GhsdvlgG~vv 220 (391)
T d1cl1a_ 195 ---FGIDVSIQAATKYLVGHSDAMIGTAV 220 (391)
T ss_dssp ---GTCSEEEEETTTTTTCSSSCCCEEEE
T ss_pred ---cccceEEeecchhcccccccccccee
Confidence 48999999999976633222444444
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.20 E-value=1e-09 Score=117.83 Aligned_cols=172 Identities=11% Similarity=0.041 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC------CCCCCeEEEeccccchhhHHHHHHHHhcCCEEE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP------FMSVKNLLTVYDYESEAVEAMIRTSEKRGARVM 243 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~------~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v~ 243 (632)
..+.+.++++++++|.+ .++||+|+|+|..+++..+- ...+..++....|+. .... .....|..+.
T Consensus 75 ~~~~~le~~~a~l~g~~----~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~-t~~~---~~~~~g~~~~ 146 (465)
T d1ax4a_ 75 RNYYDLKDKAKELFNYD----YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFD-TTAA---HVELNGCKAI 146 (465)
T ss_dssp HHHHHHHHHHHHHHCCC----EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCH-HHHH---HHHHTTCEEE
T ss_pred hHHHHHHHHHHHHHCCC----EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhh-hhHH---HHHHcCCeee
Confidence 34567889999999985 58999999999999888761 112222444444443 2222 2345688776
Q ss_pred EEec---------cCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccc-cc---hH-HHHHHhhCCcEEEEecc
Q 006746 244 SAEF---------SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YP---YL-WMRIAQENDWHILIDAC 309 (632)
Q Consensus 244 ~v~~---------~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~-~p---l~-i~~~a~~~g~~vlvDaa 309 (632)
.+.. +...+.+|.++++++|.+.. +..+.+++++...+..|.. +| ++ +.++|+++|+++++|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~ 224 (465)
T d1ax4a_ 147 NIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 224 (465)
T ss_dssp ECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccccCCCCCCCCccCccCHHHHHHHHHhhc--cccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECc
Confidence 6532 12356789999999998753 2346677777777666544 44 44 67899999999999999
Q ss_pred ccCCCC-------CCCCCCCC--------CCCcEEEEccccccCCCCCceEEEEEeCCC
Q 006746 310 ALGPKD-------MDSFGLSL--------VRPDFLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 310 q~~g~~-------m~~ldls~--------~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
+..+.- ....+.+. ...|.+++|.+|.++ +.+.|++++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~--~~~~g~l~~~~~~ 281 (465)
T d1ax4a_ 225 RFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL--LNIGGLVAIRDNE 281 (465)
T ss_dssp THHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC--CSSCEEEEESSCH
T ss_pred chhhhhcccccccccccccchhhhccccccccceeEeecccCcc--cccceeEeecchH
Confidence 864210 00111111 125999999999777 4466999888753
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=2.8e-10 Score=119.77 Aligned_cols=169 Identities=9% Similarity=0.093 Sum_probs=121.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCCCCCCeEEEeccccchhhHHHHHHHHhc
Q 006746 159 KTQLLHGGQESGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPFMSVKNLLTVYDYESEAVEAMIRTSEKR 238 (632)
Q Consensus 159 ~s~~~~g~~~~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~~~gd~ilt~~d~~s~~v~~~~~~a~~~ 238 (632)
...+.|++....-.+...++|+++-|+. +.++| +++-.|+..+.. + +.+||+|+...+-.......+.+...+.
T Consensus 44 ~~~y~YsR~gnPT~~~lE~~la~LE~~~---~a~~~-sSGmaAi~~~l~-~-l~~gd~iv~~~~~yg~t~~~~~~~l~~~ 117 (393)
T d1n8pa_ 44 IGTYEYSRSQNPNRENLERAVAALENAQ---YGLAF-SSGSATTATILQ-S-LPQGSHAVSIGDVYGGTHRYFTKVANAH 117 (393)
T ss_dssp SSSCCBTTTCCHHHHHHHHHHHHHTTCS---EEEEE-SCHHHHHHHHHH-T-SCSSCEEEEESSCCHHHHHHHHHTSTTT
T ss_pred cCCeeeeCCCChHHHHHHHHHHHHhCCc---eEEEe-cCchhHHHhhhh-c-ccCCCeeeeeeeecccchhhhhhhhhcc
Confidence 3344577766677778899999998874 34554 566677876654 4 5789997755433333566667777888
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHh----hCCcEEEEeccccCC
Q 006746 239 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQ----ENDWHILIDACALGP 313 (632)
Q Consensus 239 G~~v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~----~~g~~vlvDaaq~~g 313 (632)
|+++..+.. +.++++++++++ ++++.+-..+|++....|++ ++++|| ++|+.++||.+=+-|
T Consensus 118 gi~~~~~~~-------~~~~~~~~i~~~------t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP 184 (393)
T d1n8pa_ 118 GVETSFTND-------LLNDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSP 184 (393)
T ss_dssp CSCCEEESS-------HHHHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHH
T ss_pred cceeEEeec-------chHHHHHHhhhh------cceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCc
Confidence 999887742 346788877765 59999999999999999999 999998 789999999985545
Q ss_pred CCCCCCCCCCCCCcEEEEccccccCCCCCceEEEEE
Q 006746 314 KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV 349 (632)
Q Consensus 314 ~~m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~V 349 (632)
....||+ +++|+++-|.-|.+|.+---+|..++
T Consensus 185 ~~~~Pl~---~GADiVvhS~TKyi~GhsDv~~G~v~ 217 (393)
T d1n8pa_ 185 YISNPLN---FGADIVVHSATKYINGHSDVVLGVLA 217 (393)
T ss_dssp HHCCGGG---GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred ccCCchh---hCCCEEEEccccccCCCCccccceee
Confidence 4224665 48999999999977633223444443
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=5.9e-11 Score=127.89 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--------CCCCCeEEEeccccchhhHHHHHHHHhcCCE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP--------FMSVKNLLTVYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~--------~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
..+.+.++++++++|.+ .++|++++|+|..+++..+- ...+.-+.....|+... ...+...|+.
T Consensus 74 ~~~~~le~~~a~l~G~~----~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~G~~ 145 (467)
T d2v1pa1 74 RSYYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT----QGHSQINGCT 145 (467)
T ss_dssp HHHHHHHHHHHHHTCCS----EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHH----HHHHHHTTCE
T ss_pred chHHHHHHHHHHHHCCC----EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccccc----HHHHHHcCCe
Confidence 34567889999999985 47899999999999887762 11222244444455321 2234557999
Q ss_pred EEEEeccC---------CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCcc-ccc---hH-HHHHHhhCCcEEEEe
Q 006746 242 VMSAEFSW---------PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYP---YL-WMRIAQENDWHILID 307 (632)
Q Consensus 242 v~~v~~~~---------~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~-~~p---l~-i~~~a~~~g~~vlvD 307 (632)
++.++.+. ..+.+|.++|++.+.+.+ +..+.++++....+..|- .+| ++ +.++|+++|+++++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D 223 (467)
T d2v1pa1 146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223 (467)
T ss_dssp EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred eeecccccccccccccccccCCCHHHHHHHHhhcC--ccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 98886542 145689999999998754 235677888777776654 444 55 688999999999999
Q ss_pred ccccCCCC---------CCCCCCC------CCCCcEEEEccccccCCCCCceEEEEEeCCCc
Q 006746 308 ACALGPKD---------MDSFGLS------LVRPDFLICSFYQIFGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 308 aaq~~g~~---------m~~ldls------~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~ 354 (632)
+|+.++.- +...++. -..+|.+.+|.||.++. | +-|++..+++.+
T Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~-~-~gg~i~~~~~~~ 283 (467)
T d2v1pa1 224 SARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV-P-MGGLLCMKDDSF 283 (467)
T ss_dssp CTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCC-S-SCEEEEECSGGG
T ss_pred chhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCC-C-CceeEEecchhh
Confidence 99865310 0000000 12479999999997773 4 446666666543
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=4.3e-08 Score=103.45 Aligned_cols=334 Identities=10% Similarity=0.097 Sum_probs=198.8
Q ss_pred CCCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 106 LSNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 106 ~~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
.+++.|||..+. |--.+.+++++.+.++.. + .+ +...+ ......+.+.+
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~----~-------~~-----~~~~~---------~~~~~~~~~~~ 92 (404)
T d2byla1 38 VEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKL----T-------LT-----SRAFY---------NNVLGEYEEYI 92 (404)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC----C-------CC-----CTTEE---------ESSHHHHHHHH
T ss_pred CCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhC----C-------Cc-----ccccc---------cchHHHHHHhh
Confidence 367889996653 556677888876544321 0 00 00111 12234566677
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhCC--------CCCC-CeEEE-eccccchhhHHHHH---HHHhcCC-----E
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESYP--------FMSV-KNLLT-VYDYESEAVEAMIR---TSEKRGA-----R 241 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl~--------~~~g-d~ilt-~~d~~s~~v~~~~~---~a~~~G~-----~ 241 (632)
.++.+.+ .+.|+.++|+|...+.+.-. ...+ .+++. ...+|......+.. ...+.+. .
T Consensus 93 ~~~~~~~----~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~ 168 (404)
T d2byla1 93 TKLFNYH----KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPG 168 (404)
T ss_dssp HHHHTCS----EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTT
T ss_pred hhccccc----ccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCC
Confidence 7777663 68999999999988765421 1222 23553 44555422222210 0111221 2
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
+..+|. -+.+++++.+.++ ++..|++--+....|.+.| ++ +.++|+++|+++++|-+|.+ |..
T Consensus 169 ~~~~p~------~d~~~l~~~l~~~-----~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~ 237 (404)
T d2byla1 169 FDIIPY------NDLPALERALQDP-----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART 237 (404)
T ss_dssp EEEECT------TCHHHHHHHHTST-----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred eeEecc------cCHHHHHHhcCCC-----CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccc
Confidence 333443 3678888888643 3566777667777898887 66 78999999999999998874 321
Q ss_pred --CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccch
Q 006746 316 --MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 393 (632)
Q Consensus 316 --m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 393 (632)
+...+.-...||+++++ |-+|..-.-+|+++++++..+.+.+...+++. +
T Consensus 238 G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~---------~----------------- 289 (404)
T d2byla1 238 GRWLAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDDDIMLTIKPGEHFSTY---------G----------------- 289 (404)
T ss_dssp SSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTSCTTSSCCSS---------T-----------------
T ss_pred cccchhhhcCCCCCEEEEC--chhhCCCccceeeeechhhhhccCCCCCCcCC---------C-----------------
Confidence 11222223468988554 74331011279999998877656543222110 0
Q ss_pred hhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHH
Q 006746 394 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 473 (632)
Q Consensus 394 ~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L 473 (632)
| .+++ ..+. .+.|+.+++ +.+.++++.+
T Consensus 290 -------g-----npl~-------------~aaa------------------------~a~L~~i~~---~~l~~~~~~~ 317 (404)
T d2byla1 290 -------G-----NPLG-------------CRVA------------------------IAALEVLEE---ENLAENADKL 317 (404)
T ss_dssp -------T-----CHHH-------------HHHH------------------------HHHHHHHHH---TTHHHHHHHH
T ss_pred -------c-----CHHH-------------HHHH------------------------HHHHHHHHh---cCchhhhhHh
Confidence 0 0111 1111 156777765 4467888889
Q ss_pred HHHHHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHH
Q 006746 474 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 553 (632)
Q Consensus 474 ~~~L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~ 553 (632)
..++.+.|.+++++ .+.=+ .-+|.+.++.+.+.++. ....+.+.+-++||.++.
T Consensus 318 g~~l~~~l~~l~~~------~i~~v-----Rg~Gl~~~i~~~~~~~~--~~~~~~~~l~~~Gvl~~~------------- 371 (404)
T d2byla1 318 GIILRNELMKLPSD------VVTAV-----RGKGLLNAIVIKETKDW--DAWKVCLRLRDNGLLAKP------------- 371 (404)
T ss_dssp HHHHHHHHHTSCTT------TEEEE-----EEETTEEEEEECCCSSC--CHHHHHHHHHHTTEECEE-------------
T ss_pred hHHHHHHHHhhccc------cceee-----eecccEEEEEEecCCch--hHHHHHHHHHhCCeEEec-------------
Confidence 99999999999652 22110 12466778877765432 333344444457876641
Q ss_pred HhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 554 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 554 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.+..+||+++.+..|.+||+.+++.+++-|.+
T Consensus 372 ---------------------------~~~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 372 ---------------------------THGDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp ---------------------------EETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CCCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 12248999999999999999999999987753
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.06 E-value=7.6e-09 Score=108.76 Aligned_cols=327 Identities=14% Similarity=0.179 Sum_probs=189.8
Q ss_pred CCCceEeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 106 LSNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 106 ~~~~vyLD~ag------~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
.+++-|||..+ .|-=.+.+++++.+.+.+. + . .+.. + ..+...+.-+.+
T Consensus 34 ~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~----~----~-----------~~~~---~---~~~~~~~la~~l 88 (387)
T d1vefa1 34 AEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL----M----A-----------MPQT---L---PTPMRGEFYRTL 88 (387)
T ss_dssp TTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC----C----C-----------CCTT---S---CCHHHHHHHHHH
T ss_pred CCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhh----c----c-----------cccc---c---CCchHHHHHHHh
Confidence 36788999866 5555567777765533221 0 0 0000 0 112222333344
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHH---HHHhcC-----CEEEEEeccC
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIR---TSEKRG-----ARVMSAEFSW 249 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~---~a~~~G-----~~v~~v~~~~ 249 (632)
.+.... ....|.|+.++|+|+..+++.-. +....+|++ ...||......+.- ...+.+ ..+..+|.+
T Consensus 89 ~~~~~~--~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~- 165 (387)
T d1vefa1 89 TAILPP--ELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN- 165 (387)
T ss_dssp HHTSCT--TEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-
T ss_pred hhhccc--cceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-
Confidence 443322 23469999999999998765432 233344654 44676533333210 001111 234445442
Q ss_pred CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--CCCCCC
Q 006746 250 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--MDSFGL 321 (632)
Q Consensus 250 ~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m~~ldl 321 (632)
|.+.|++.+.++ +..|++--+....|...| ++ +.++|+++|+++++|-++.+ |.. +.....
T Consensus 166 -----d~~~l~~~~~~~------iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~ 234 (387)
T d1vefa1 166 -----DVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH 234 (387)
T ss_dssp -----CHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred -----CHHHHHHhcCCC------eEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCccccc
Confidence 578888877643 466677667777898877 77 78899999999999998864 321 111111
Q ss_pred CCCCCcEEEEcccccc--CCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhhhhh
Q 006746 322 SLVRPDFLICSFYQIF--GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 399 (632)
Q Consensus 322 s~~~~Df~~~S~hK~~--G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~e 399 (632)
-...||+++++ |.+ |+ | ++++..+++.+..+.+...|++. +
T Consensus 235 ~~v~PDi~~~g--K~l~gG~-~--~~~~~~~~~~~~~~~~~~~g~T~---------~----------------------- 277 (387)
T d1vefa1 235 FGIVPDILTLA--KALGGGV-P--LGVAVMREEVARSMPKGGHGTTF---------G----------------------- 277 (387)
T ss_dssp HTCCCSEEEEC--GGGGTTS-S--CEEEEEEHHHHHTSCTTSSCCSS---------T-----------------------
T ss_pred CCcCCceeeec--ccCCCCc-c--ccccccceeeeeccccCCccccC---------C-----------------------
Confidence 12478999887 633 43 3 46667777666555443322110 0
Q ss_pred ccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 006746 400 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 479 (632)
Q Consensus 400 ~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~L~~ 479 (632)
| .+++. ..++ +.|+.+.+ +.+.++++.+.+++.+
T Consensus 278 -g-----nPla~------------aaa~-------------------------a~L~~l~~---~~~~~~v~~~g~~l~~ 311 (387)
T d1vefa1 278 -G-----NPLAM------------AAGV-------------------------AAIRYLER---TRLWERAAELGPWFME 311 (387)
T ss_dssp -T-----CHHHH------------HHHH-------------------------HHHHHHHH---HTTHHHHHHHHHHHHH
T ss_pred -C-----Ccchh------------hhcc-------------------------cchhhccc---ccccchHhhhhHHHHH
Confidence 0 01111 1111 45666654 4567888899999999
Q ss_pred HHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhhhhh
Q 006746 480 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 559 (632)
Q Consensus 480 ~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~~~~ 559 (632)
.|.+++|+. ...|+ ..|.+.+|.+.+. ....+.+++.++|+.+..
T Consensus 312 ~L~~l~~~~---v~~vr--------g~Gl~~~ie~~~~-----~~~~~~~~~~~~g~l~~~------------------- 356 (387)
T d1vefa1 312 KLRAIPSPK---IREVR--------GMGLMVGLELKEK-----AAPYIARLEKEHRVLALQ------------------- 356 (387)
T ss_dssp HHHTSCCTT---EEEEE--------EETTEEEEEESSC-----SHHHHHHHHHHHCEECEE-------------------
T ss_pred HHHhcCCCc---eEEEe--------ecceEEEEEEeCC-----chHHHHHHHHHCCCeEEe-------------------
Confidence 999997633 11122 2466778877653 234455555555554321
Q ss_pred hhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 560 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
.+..+||+++.+..|.+||+.+++.+++.|
T Consensus 357 ---------------------~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 357 ---------------------AGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp ---------------------SSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------------------cCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 123589999999999999999999998876
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.99 E-value=1.6e-07 Score=98.80 Aligned_cols=217 Identities=10% Similarity=0.107 Sum_probs=115.1
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++.|||..+. |--.+.+++++.+.+..... .+... .....+.+.+.+.
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~------------------~~~~~-------~~~~~~~~~~~~~ 91 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI------------------CSRAF-------FSVPLGICERYLT 91 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC------------------CCTTS-------EEHHHHHHHHHHH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCC------------------ccccc-------chHHHHHHHHhhh
Confidence 67899996543 43467788887654332100 00000 1133445666777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC--------CCCC-CeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCC
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP--------FMSV-KNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWP 250 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~--------~~~g-d~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~ 250 (632)
++.+.+ .+.|+.++++|....+.... ...+ ..++.. ..+|......+ ........+....|....
T Consensus 92 ~~~~~~----~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (404)
T d1z7da1 92 NLLGYD----KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCI-SASTTKKCTSNFGPFAPQ 166 (404)
T ss_dssp HHHTCS----EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------C
T ss_pred hccccc----eeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCccccc-ccccccccccCCCCCCcc
Confidence 777653 58899999999887654321 1122 235433 34443211111 111111111111111000
Q ss_pred cc---ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CC--CCCCC
Q 006746 251 RL---RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PK--DMDSF 319 (632)
Q Consensus 251 ~~---~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~--~m~~l 319 (632)
.. .-+.+.+...+.+. .+..|++--+....|.+.| ++ +.++|+++|+++++|-+|.+ |. .+-..
T Consensus 167 ~~~~~~~~~~~l~~~~~~~-----~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~ 241 (404)
T d1z7da1 167 FSKVPYDDLEALEEELKDP-----NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV 241 (404)
T ss_dssp EEEECTTCHHHHHHHHTST-----TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG
T ss_pred ccccccchHHHHHHHhcCC-----CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccc
Confidence 00 12456666666532 4677777667778899988 78 88999999999999998863 21 11222
Q ss_pred CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCCC
Q 006746 320 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDN 360 (632)
Q Consensus 320 dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~~ 360 (632)
..-...||+++++ |-+|..-.-+|++.++++..+.+++.
T Consensus 242 e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~~i~~~~~~~ 280 (404)
T d1z7da1 242 HHYNVKPDVILLG--KALSGGHYPISAVLANDDIMLVIKPG 280 (404)
T ss_dssp GGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTCCTT
T ss_pred cccCCCCCEEEEc--ccccCCCCCcccccchHHHHccCCCC
Confidence 2223479998665 74431011279999999887666543
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=98.94 E-value=3e-08 Score=104.37 Aligned_cols=215 Identities=11% Similarity=-0.033 Sum_probs=129.1
Q ss_pred CceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC--
Q 006746 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI-- 185 (632)
Q Consensus 108 ~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a-- 185 (632)
--+|.|-.|..+..++|.++.......... + +.|+...+ ..+.|+.|++++.-
T Consensus 37 iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~-------------------~----~~Y~p~~G--~p~lreaia~~~~~~~ 91 (412)
T d1ajsa_ 37 VGAYRTDDCQPWVLPVVRKVEQRIANNSSL-------------------N----HEYLPILG--LAEFRTCASRLALGDD 91 (412)
T ss_dssp SCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-------------------C----CCCCCTTC--CHHHHHHHHHHHHCTT
T ss_pred CCCCcCCCCCCCCcHHHHHHHHHHHhCCCc-------------------C----CCCCCCCC--CHHHHHHHHHHHhccC
Confidence 346888877778888888875432211100 0 01111110 02578888877632
Q ss_pred ----CCCCccEEEeCCHHHHHHHHHhhC------CCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE-ecc-CCcc
Q 006746 186 ----SENDYGMVFTANRTSAFKLLAESY------PFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA-EFS-WPRL 252 (632)
Q Consensus 186 ----~~~ey~vvft~naT~al~lv~~sl------~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v-~~~-~~~~ 252 (632)
.++...++.|.+.+.++......+ -..+||+|++. -.++. .. ...+..|++++.+ +.. ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~--y~---~~~~~~G~~~v~~~~~~~~~~~ 166 (412)
T d1ajsa_ 92 SPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN--HN---GVFTTAGFKDIRSYRYWDTEKR 166 (412)
T ss_dssp CHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH--HH---HHHHHTTCSCEEEEECEETTTT
T ss_pred CcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchh--hH---HHHHHcCCeEEEeecccccccc
Confidence 334445677888877776655543 15789997754 35542 22 2345578765443 332 2233
Q ss_pred ccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CCC---CCC----CC
Q 006746 253 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PKD---MDS----FG 320 (632)
Q Consensus 253 ~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~~---m~~----ld 320 (632)
..+.+.+++.+...+ ++++++.++-.+|+||..++-+ |+++|+++|++++.|-+... ..+ ... ..
T Consensus 167 ~~d~~~~~~~~~~~~---~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 243 (412)
T d1ajsa_ 167 GLDLQGFLSDLENAP---EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243 (412)
T ss_dssp EECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred cccHHHHHHHHHhcc---CCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhh
Confidence 467777777765432 3568999999999999999844 67889999999999986432 110 000 01
Q ss_pred CCCCCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 321 LSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
.......+++.|+-|-++.+-..+|.+++......
T Consensus 244 ~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~ 278 (412)
T d1ajsa_ 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPD 278 (412)
T ss_dssp HHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHH
T ss_pred hhhcccccccccccccccCCCCCccccccchhHHH
Confidence 11224467788888877753335788888776543
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=98.87 E-value=9e-09 Score=108.72 Aligned_cols=176 Identities=14% Similarity=0.151 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCC------CCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEE
Q 006746 174 AMKKRIMDFLNI------SENDYGMVFTANRTSAFKLLAESY-PFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSA 245 (632)
Q Consensus 174 ~~R~~ia~~l~a------~~~ey~vvft~naT~al~lv~~sl-~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v 245 (632)
+.|+.+++++.- .++...++-+.+++.++.+++..+ ...+||+|+++ ..++. . ...++..|++++.+
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~--y---~~~~~~~g~~~~~~ 151 (412)
T d1yaaa_ 77 SLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWAN--H---MAIFENQGLKTATY 151 (412)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTT--H---HHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCch--h---HHHHHHcCCceecc
Confidence 567777776532 222222333345555555544322 24689997754 34442 2 22356789999999
Q ss_pred eccC-CccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CCC---C
Q 006746 246 EFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PKD---M 316 (632)
Q Consensus 246 ~~~~-~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~~---m 316 (632)
+... ....++.+.+...+...+ +.+.+++++..+|+||..++.+ |+++|++++++++.|-+-.. ..+ .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~ 228 (412)
T d1yaaa_ 152 PYWANETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDK 228 (412)
T ss_dssp ECEETTTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHH
T ss_pred cccccccccccchhhhcccccCC---CceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCccc
Confidence 8742 344567888888887543 3568999999999999999855 57788999999999987432 110 0
Q ss_pred CCC-------CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcccc
Q 006746 317 DSF-------GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 357 (632)
Q Consensus 317 ~~l-------dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L 357 (632)
.+. .......=+++.|+-|-||.+.--+|++++..+.+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~ 276 (412)
T d1yaaa_ 229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQN 276 (412)
T ss_dssp HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTH
T ss_pred chhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhH
Confidence 000 01112234778899998886445579999998876433
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=98.87 E-value=9.6e-09 Score=109.24 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-------CCCCCeEEEeccccchhhHHHHHHHHhcCCEE
Q 006746 170 GLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP-------FMSVKNLLTVYDYESEAVEAMIRTSEKRGARV 242 (632)
Q Consensus 170 ~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~-------~~~gd~ilt~~d~~s~~v~~~~~~a~~~G~~v 242 (632)
++.+++|+.-...=|+..++..||+++|+|++|++++.++- ..+|++||+..=+.+ .+... ++-.|.+.
T Consensus 104 ~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~-~Y~~~---~~~~~~~~ 179 (425)
T d2hoxa1 104 ELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP-VFREQ---TKYFDKKG 179 (425)
T ss_dssp HHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH-HHHHH---HHHSCBTT
T ss_pred HHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccc-cHHHH---HHHcCCCC
Confidence 44444444433334565556679999999999999999872 578999886543333 23332 33345544
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchHHHHHHhhCCcEEEEeccccCCCCCCCCCCC
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLS 322 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~i~~~a~~~g~~vlvDaaq~~g~~m~~ldls 322 (632)
..+..| .+.+++.+++ +++++.++.-+|+||.... +-.+++.+|.|-+-..++ ..++. .
T Consensus 180 ~~~~~D-------~~~~~~~~~~------~~~ii~l~sPnNPtG~l~~------~v~~~~~~I~DEaY~~~~-f~~~~-~ 238 (425)
T d2hoxa1 180 YVWAGN-------AANYVNVSNP------EQYIEMVTSPNNPEGLLRH------AVIKGCKSIYDMVYYWPH-YTPIK-Y 238 (425)
T ss_dssp EEEEEE-------GGGGTTCSCG------GGEEEEEESSCTTTCCCCC------CSSTTCEEEEECTTCSTT-TSCCC-S
T ss_pred CccCCC-------HHHHHhhCCC------CceEEEEECCCCCCcchhh------hhhhCCEEEEeccccCcc-ccchh-h
Confidence 444433 3444444443 4589999999999998632 334689999999866554 13332 3
Q ss_pred CCCCcEEEEccccccCCCCCceEEEEEeCCC
Q 006746 323 LVRPDFLICSFYQIFGENPSGFGCLFVKKST 353 (632)
Q Consensus 323 ~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~ 353 (632)
...-++++.|+-|.||.+-.-+|.++++++.
T Consensus 239 ~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~ 269 (425)
T d2hoxa1 239 KADEDILLFTMSKFTGHSGSRFGWALIKDES 269 (425)
T ss_dssp CBCCSEEEEEHHHHTSCGGGCCEEEEECCHH
T ss_pred hcCCeEEEEeCHHhccCcchheeeEEeCCHH
Confidence 4566999999999999743446888887654
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=1.6e-08 Score=105.92 Aligned_cols=213 Identities=13% Similarity=0.069 Sum_probs=131.1
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC---
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI--- 185 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a--- 185 (632)
-+|.|..|-.+.++.+.++.....+. + .+ +.|+-..+ ..+.|+.+++++.-
T Consensus 34 G~~~d~~g~~p~~~~V~~A~~~~~~~-----~------------------~~-~~Y~p~~G--~~~lR~aia~~~~~~~~ 87 (396)
T d2q7wa1 34 GVYKDETGKTPVLTSVKKAEQYLLEN-----E------------------TT-KNYLGIDG--IPEFGRCTQELLFGKGS 87 (396)
T ss_dssp CSCCCTTSCCCCCHHHHHHHHHHHHH-----C------------------CC-CCCCCTTC--CHHHHHHHHHHHHCTTC
T ss_pred CCccCCCCCCCCCHHHHHHHHHHhhC-----C------------------CC-CCCCCCcC--CHHHHHHHHHHHHhhcC
Confidence 46778778788888898875543211 0 00 00111010 12678888876532
Q ss_pred ---CCCCccEEEeCCHHHHHHHHHhhC-CCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccCCc-cccCHHHH
Q 006746 186 ---SENDYGMVFTANRTSAFKLLAESY-PFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSWPR-LRINSEKL 259 (632)
Q Consensus 186 ---~~~ey~vvft~naT~al~lv~~sl-~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~~~-~~i~~~~l 259 (632)
+++...++.|.+++.++.+....+ .+.+||.|++. ..+++ . ...++..|++++.++...++ ...+..++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~--y---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 162 (396)
T d2q7wa1 88 ALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN--H---KSVFNSAGLEVREYAYYDAENHTLDFDAL 162 (396)
T ss_dssp HHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH--H---HHHHHHTTCEEEEEECEETTTTEECHHHH
T ss_pred CcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCcc--c---hHHHHHcCCeeEecccccccccccccchH
Confidence 233334556777777777666543 25789997754 34553 2 23456789999999886433 23456666
Q ss_pred HHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CCC--CC--C--CCCCCCCCcE
Q 006746 260 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PKD--MD--S--FGLSLVRPDF 328 (632)
Q Consensus 260 ~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~~--m~--~--ldls~~~~Df 328 (632)
.+.+... .+++.++.++--+|+||..++.+ |+++|++++++++.|-+-.. ..+ .. . ...+.....+
T Consensus 163 ~~~~~~~---~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T d2q7wa1 163 INSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred HHHHHHh---ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccc
Confidence 6655442 34568999999999999999877 46779999999999987432 111 00 0 0011223457
Q ss_pred EEEccccccCCCCCceEEEEEeCCCcc
Q 006746 329 LICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 329 ~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
++.|+-|.|+.+-..+|++.+....++
T Consensus 240 ~~~s~sk~~~~~G~R~G~~~~~~~~~~ 266 (396)
T d2q7wa1 240 VASSYSKNFGLYNERVGACTLVAADSE 266 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEEECSSHH
T ss_pred ccccccccccccCCCccccccchhHHH
Confidence 777888977754345788888776654
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=3.1e-07 Score=97.43 Aligned_cols=302 Identities=11% Similarity=0.099 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCC---C---CCCCeEEE-eccccchhhHHHHHHHH----h---
Q 006746 172 ESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYP---F---MSVKNLLT-VYDYESEAVEAMIRTSE----K--- 237 (632)
Q Consensus 172 ~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~---~---~~gd~ilt-~~d~~s~~v~~~~~~a~----~--- 237 (632)
..+.-+++.+....+ ...+.|+.++++|+..++.... . ..+.+|+. ...||......+ .... .
T Consensus 88 ~~~l~~~l~~~~~~~--~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~-~~t~~~~~~~~~ 164 (429)
T d1s0aa_ 88 AIELCRKLVAMTPQP--LECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAM-SVCDPDNSMHSL 164 (429)
T ss_dssp HHHHHHHHHHHSCTT--CCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHH-TTSCTTTTTGGG
T ss_pred HHHHHHHHHhhhccC--cceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhh-hhcCCccccccc
Confidence 344556666676554 3379999999999987654321 1 12345664 456775322221 1100 0
Q ss_pred c---CCEEEEEeccCC-----ccccCHHHHHHHHHhcCcCCCceeEEEEe-ccCCCCccccc----hH-HHHHHhhCCcE
Q 006746 238 R---GARVMSAEFSWP-----RLRINSEKLRKMVVSKGKKKKQRGLFVFP-LHSRMTGARYP----YL-WMRIAQENDWH 303 (632)
Q Consensus 238 ~---G~~v~~v~~~~~-----~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~-~~sn~TG~~~p----l~-i~~~a~~~g~~ 303 (632)
. .......|.... ....+.+++++.+.... ..+..+++. .+.+..|...| ++ +.++|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gil 241 (429)
T d1s0aa_ 165 WKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR---HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL 241 (429)
T ss_dssp GTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT---TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred cCccccccccccccccccccccchhhhhhhhhhhhhcC---CccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcc
Confidence 0 011222222111 11123455655555432 234555555 44466666554 55 67889999999
Q ss_pred EEEeccccC-CCC--CCCCCCCCCCCcEEEEcccc-c-cCCCCCceEEEEEeCCCccccCCCCCCCceeecccccccccc
Q 006746 304 ILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQ-I-FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLT 378 (632)
Q Consensus 304 vlvDaaq~~-g~~--m~~ldls~~~~Df~~~S~hK-~-~G~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~ 378 (632)
+++|-+|.+ |.- +.....-...||+++++ | + -|+ .-+|++.+++++.+.+.+...+ . ++.
T Consensus 242 lI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~--~p~~av~~~~~i~~~~~~~~~~-~---------~~~- 306 (429)
T d1s0aa_ 242 LIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGT--MTLSATLTTREVAETISNGEAG-C---------FMH- 306 (429)
T ss_dssp EEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSS--SCCEEEEECHHHHHHHHTSTTS-S---------CSC-
T ss_pred eehhhccccccccccccccccceecccccccc--ccccccc--ccccchhhHHHHHhccCCCCCc-c---------eee-
Confidence 999998875 321 11222223479999887 5 3 342 2489999999876654331111 0 000
Q ss_pred cccCCCCCCccccchhhhhhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHH
Q 006746 379 DEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV 458 (632)
Q Consensus 379 ~~~~~~~~e~~~~~~~~~e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~ 458 (632)
.+| |.+ |.....+. .+.|+.+
T Consensus 307 ---------------------~~T--~~g------------np~~~aaa------------------------~a~L~~i 327 (429)
T d1s0aa_ 307 ---------------------GPT--FMG------------NPLACAAA------------------------NASLAIL 327 (429)
T ss_dssp ---------------------CCT--TTT------------CHHHHHHH------------------------HHHHHHH
T ss_pred ---------------------cCC--CCC------------Ccccchhh------------------------hcccccc
Confidence 111 110 00011111 1556666
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcEE-EECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcE
Q 006746 459 DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVK-IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENIS 537 (632)
Q Consensus 459 ~~~Gl~~I~~r~~~L~~~L~~~L~~l~h~~~~G~p~v~-Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~ 537 (632)
++ +.+.+|++.+.++|.++|.+|+.. +.|. | .-+|.+++|.+..+ .....+++.+-++|+.
T Consensus 328 ~~---~~~~~~~~~~g~~l~~~L~~l~~~-----~~v~~v------rg~Gl~~~~e~~~~----~~~~~~~~~~~~~Gl~ 389 (429)
T d1s0aa_ 328 ES---GDWQQQVADIEVQLREQLAPARDA-----EMVADV------RVLGAIGVVETTHP----VNMAALQKFFVEQGVW 389 (429)
T ss_dssp HT---CHHHHHHHHHHHHHHHHHGGGGGC-----TTEEEE------EEETTEEEEEESSC----BCHHHHHHHHHHTTEE
T ss_pred cc---ccccchhhHHHHHHHHHHHHhccC-----CceEEE------eecccEEEEEecCc----ccHHHHHHHHHHCCcE
Confidence 54 567889999999999999888431 3332 2 12567888887654 3566777777777887
Q ss_pred EccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 538 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 538 lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
++.. + .+||+++.+-.|.+||+++++.|.+.|.+
T Consensus 390 ~~~~----------------------------------------g-~~i~~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 390 IRPF----------------------------------------G-KLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp CCCB----------------------------------------T-TEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred EEec----------------------------------------C-CEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 6421 1 38999999999999999999999987665
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=9.8e-07 Score=93.28 Aligned_cols=348 Identities=11% Similarity=0.116 Sum_probs=188.6
Q ss_pred CCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHH
Q 006746 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (632)
Q Consensus 107 ~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia 180 (632)
+++-|||..+. |--.+.+++++.+.+..... ..+.. ...+...+.-+++.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~------------------~~~~~------~~~~~~~~la~~l~ 93 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH------------------TCFQV------LAYEPYLELCEIMN 93 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC------------------CCTTT------EECHHHHHHHHHHH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCC------------------ccccc------ccCcHHHHHHHHHH
Confidence 67889998775 55578888887664432110 00000 01233445666777
Q ss_pred HHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHHHHHHh-----c-----CCEEEEEecc
Q 006746 181 DFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMIRTSEK-----R-----GARVMSAEFS 248 (632)
Q Consensus 181 ~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~~~a~~-----~-----G~~v~~v~~~ 248 (632)
+++.-+. .+.+.|+.++|+|...+++--. +....+|++ ...||.. ..+.....-. . .......+..
T Consensus 94 ~~~p~~~-~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~-t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 171 (425)
T d1sffa_ 94 QKVPGDF-AKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGR-THYTLALTGKVNPYSAGMGLMPGHVYRALYP 171 (425)
T ss_dssp HHSSCSS-CEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCS-SHHHHHHSSCCTTTTTTSCCCCSSEEEECCC
T ss_pred hhhhhcc-cceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCc-cccchhhcCCCCcccCCcccccCCccccCCc
Confidence 7775432 2368899999999988765432 223344664 4567763 3332221100 0 0112222221
Q ss_pred CCccccCH----HHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC--C
Q 006746 249 WPRLRINS----EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD--M 316 (632)
Q Consensus 249 ~~~~~i~~----~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~--m 316 (632)
.+...... ....+.+... .....+..|.+--+....|.+.| ++ +.++|+++|+++++|-+|.+ +.. +
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~ 250 (425)
T d1sffa_ 172 CPLHGISEDDAIASIHRIFKND-AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL 250 (425)
T ss_dssp BGGGTBCHHHHHHHHHHHHHHT-CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred cccccccchhhHHHHHHHHHhc-ccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchh
Confidence 11111111 1122222211 12335666777667667888765 33 55789999999999998886 321 1
Q ss_pred CCCCCCCCCCcEEEEccccccC-CCCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhh
Q 006746 317 DSFGLSLVRPDFLICSFYQIFG-ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 395 (632)
Q Consensus 317 ~~ldls~~~~Df~~~S~hK~~G-~~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 395 (632)
...+.-...||+++++ |.+| ..| +|++.++++.++.+.+...|++
T Consensus 251 ~a~~~~gv~PDi~~~g--K~l~gG~P--~~av~~~~~i~~~~~~~~~~~T------------------------------ 296 (425)
T d1sffa_ 251 FAMEQMGVAPDLTTFA--KSIAGGFP--LAGVTGRAEVMDAVAPGGLGGT------------------------------ 296 (425)
T ss_dssp SGGGGTTSCCSEEEEC--GGGGTSSC--CEEEEEEHHHHTTSCTTSBCCS------------------------------
T ss_pred hHHHhcCCCccceecc--cccCCCcc--eEEEEEcHHHHHhhCCCCCCCC------------------------------
Confidence 1111223479988865 8443 223 8999999998765544322211
Q ss_pred hhhhccccCCCc-cchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHH
Q 006746 396 QEKVAATNTFSG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 474 (632)
Q Consensus 396 ~e~e~gt~~f~~-~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~ 474 (632)
|.+ +++. ..++ +.|+.+.+. .+.++.+.+.
T Consensus 297 ---------~~gnpl~~------------aaa~-------------------------a~L~~i~~~---~~~~~~~~~g 327 (425)
T d1sffa_ 297 ---------YAGNPIAC------------VAAL-------------------------EVLKVFEQE---NLLQKANDLG 327 (425)
T ss_dssp ---------SSSCHHHH------------HHHH-------------------------HHHHHHHHT---THHHHHHHHH
T ss_pred ---------CCcCHHHH------------HHHH-------------------------HHHHHHHHh---hhhhhhhhhh
Confidence 110 1111 1111 566666653 4566777777
Q ss_pred HHHHHHHHccCCCCCCCCCcE-EEECCCCCCCCCcEEEEEEccC-CCCccCHH---HHHHHHHhCCcEEccCccCChHHH
Q 006746 475 NWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDW-KREKIEPV---LVQKLADRENISLSYGSLHHIWFS 549 (632)
Q Consensus 475 ~~L~~~L~~l~h~~~~G~p~v-~Iygp~~~~~rg~ivaFnv~~~-~G~~i~~~---~V~kla~~~gI~lr~G~~c~~~~~ 549 (632)
+++.+.|.++.-.+ |.+ .|- -.|.++++.+.+. +...-+.. .+.+.+-++||.++.+
T Consensus 328 ~~l~~~l~~~~~~~----~~v~~vr------g~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-------- 389 (425)
T d1sffa_ 328 QKLKDGLLAIAEKH----PEIGDVR------GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSC-------- 389 (425)
T ss_dssp HHHHHHHHHHHHTC----TTEEEEE------EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEE--------
T ss_pred hhhhhhhhhhHhhC----CceEEEE------ccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEecc--------
Confidence 77777776652111 222 221 2467777776532 11111222 2333344567766421
Q ss_pred hHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 550 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 550 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
.....+||+++.+..|.+||+.+++.+++.|++
T Consensus 390 ------------------------------g~~~n~i~~~PpL~it~~eid~~l~~l~~al~e 422 (425)
T d1sffa_ 390 ------------------------------GPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 422 (425)
T ss_dssp ------------------------------STTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 112358999999999999999999999987764
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=98.76 E-value=6.1e-08 Score=101.60 Aligned_cols=212 Identities=8% Similarity=-0.002 Sum_probs=129.5
Q ss_pred CCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcCC-
Q 006746 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI- 185 (632)
Q Consensus 107 ~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~a- 185 (632)
.--+|.|-.+..+..+.+.++.......-. ...| +.+ .|. .+.|+.|++++.-
T Consensus 34 ~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~---~~~Y------------~~~-----~G~------~~lr~aia~~~~~~ 87 (401)
T d7aata_ 34 GVGAYRDDNGKPYVLNCVRKAEAMIAAKKM---DKEY------------LPI-----AGL------ADFTRASAELALGE 87 (401)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHTTC---CCCC------------CCT-----TCC------HHHHHHHHHHHHCT
T ss_pred cCCCCcCCCCCCCCCHHHHHHHHHHhhCCC---CCCC------------CCC-----CCC------HHHHHHHHHHHhcc
Confidence 345688888888888888887544321100 0001 000 011 2577777776532
Q ss_pred -----CCCCccEEEeC--CHHH---HHHHHHhhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC-Cccc
Q 006746 186 -----SENDYGMVFTA--NRTS---AFKLLAESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW-PRLR 253 (632)
Q Consensus 186 -----~~~ey~vvft~--naT~---al~lv~~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~-~~~~ 253 (632)
+++ .|+.|. +++. ++.+++..+ ..+||+|++. -.|+. . ...++..|++++.+|+.. ....
T Consensus 88 ~~~~~~~~--~i~~~~~~~~~g~~~~~~~~~~~l-~~pGd~Vlv~~P~y~~--y---~~~~~~~g~~~~~~~~~~~~~~~ 159 (401)
T d7aata_ 88 NSEAFKSG--RYVTVQGISGTGSLRVGANFLQRF-FKFSRDVYLPKPSWGN--H---TPIFRDAGLQLQAYRYYDPKTCS 159 (401)
T ss_dssp TCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEEESCCTT--H---HHHHHHTTCEEEEEECEETTTTE
T ss_pred CCcccCcC--ceEEeccchHHHHHHHHHHhhHhh-cCCCceEEEecCCCcc--h---hhHHHHcCCeEEEEecccccccc
Confidence 233 344443 3443 445555666 6899997654 35553 2 234567899999999853 3445
Q ss_pred cCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CCC---CCCC---CCC
Q 006746 254 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PKD---MDSF---GLS 322 (632)
Q Consensus 254 i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~~---m~~l---dls 322 (632)
.+.+.+.+.+...+ +++++++++.-+|+||..++.+ |+++|++++++++.|-+-.. ..+ ...+ .+.
T Consensus 160 ~~~~~~~~~~~~~~---~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~ 236 (401)
T d7aata_ 160 LDFTGAMEDISKIP---EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI 236 (401)
T ss_dssp ECHHHHHHHHTTSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred ccHHHHHHHHhcCC---CceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhh
Confidence 68888888876432 3568999999999999999876 56789999999999986322 110 0000 001
Q ss_pred CCCC-cEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 323 LVRP-DFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 323 ~~~~-Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
.... -+++.|+-|-++.+-.-+|++.+.....+
T Consensus 237 ~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~ 270 (401)
T d7aata_ 237 EQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAE 270 (401)
T ss_dssp HTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHH
T ss_pred hhhcccceeEeccccceeeccccceeecchHHHH
Confidence 1112 25667888877753335698888877654
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.76 E-value=9.5e-07 Score=94.48 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=67.5
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHHHHHHccC--CCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHH
Q 006746 453 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ--HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKL 530 (632)
Q Consensus 453 ~aLd~~~~~Gl~~I~~r~~~L~~~L~~~L~~l~--h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kl 530 (632)
+.|+.+.+ +.+.+|++.+.++|.++|.+|. |++ ..-.|- -+|-+++|.+.+.+ + ...+.+.
T Consensus 356 a~l~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~----~i~~vr------G~Gl~~~ie~~~~~---~-~~~i~~~ 418 (461)
T d1ohwa_ 356 EVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQ----FISRVR------GRGTFCSFDTPDES---I-RNKLISI 418 (461)
T ss_dssp HHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTT----TCEEEE------EETTEEEEECSSHH---H-HHHHHHH
T ss_pred ccchhhhh---hhHHHHHHHHHHHHHHHHHHHHhhCCC----ceEEee------eeeEEEEEEcCCHH---H-HHHHHHH
Confidence 56777765 3466777888888888887762 322 111121 24678888776521 1 2234444
Q ss_pred HHhCCcEEccCccCChHHHhHHHHhhhhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhh
Q 006746 531 ADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 610 (632)
Q Consensus 531 a~~~gI~lr~G~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l 610 (632)
+.++||.++. .+..+||+.+.+..|.+||+.+++.+.+.|
T Consensus 419 ~~~~Gll~~~----------------------------------------~~~~~ir~~PpL~it~~eid~~~~~l~~~l 458 (461)
T d1ohwa_ 419 ARNKGVMLGG----------------------------------------CGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 458 (461)
T ss_dssp HHHTTEECEE----------------------------------------ETTTEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHCCeEEee----------------------------------------CCCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 5556776642 123589999999999999999999999877
Q ss_pred hh
Q 006746 611 DA 612 (632)
Q Consensus 611 ~~ 612 (632)
++
T Consensus 459 ~e 460 (461)
T d1ohwa_ 459 AD 460 (461)
T ss_dssp HT
T ss_pred hc
Confidence 53
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.74 E-value=3.9e-07 Score=96.58 Aligned_cols=212 Identities=14% Similarity=0.131 Sum_probs=124.7
Q ss_pred CCCceEeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHH
Q 006746 106 LSNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (632)
Q Consensus 106 ~~~~vyLD~ag~------gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~i 179 (632)
..++-|||..+. |--.+.+++++.+.++... + + .. .......+.+++
T Consensus 49 ~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~------~-----~------~~----------~~~~~~~la~~~ 101 (427)
T d2gsaa_ 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT------S-----F------GA----------PCALENVLAEMV 101 (427)
T ss_dssp TTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCS------C-----C------SS----------CCHHHHHHHHHH
T ss_pred CCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcC------c-----c------cc----------chhHHHHHHHHH
Confidence 367889998665 3346778888765443210 0 0 00 012223455666
Q ss_pred HHHcCCCCCCccEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-eccccchhhHHHH---HHHHhcCC------------EE
Q 006746 180 MDFLNISENDYGMVFTANRTSAFKLLAESYP-FMSVKNLLT-VYDYESEAVEAMI---RTSEKRGA------------RV 242 (632)
Q Consensus 180 a~~l~a~~~ey~vvft~naT~al~lv~~sl~-~~~gd~ilt-~~d~~s~~v~~~~---~~a~~~G~------------~v 242 (632)
.+++.- ...+.|+.++|+|+..++.-.. +....+|++ ...||......+. .-..+.+. ++
T Consensus 102 ~~~~~~---~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 178 (427)
T d2gsaa_ 102 NDAVPS---IEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANT 178 (427)
T ss_dssp HHHSTT---CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTE
T ss_pred HhhCCc---cccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccce
Confidence 666543 2368899999999998776431 233345664 4466642211110 00011111 12
Q ss_pred EEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEeccccC-CCC-
Q 006746 243 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILIDACALG-PKD- 315 (632)
Q Consensus 243 ~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvDaaq~~-g~~- 315 (632)
...+ .-+.+++++.|.+. ..++..|++--+....|...| ++ +.++|+++|+++++|-+|.+ ...
T Consensus 179 ~~~~------~~~~~~le~~~~~~---~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~ 249 (427)
T d2gsaa_ 179 LTTP------YNDLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAY 249 (427)
T ss_dssp EEEC------TTCHHHHHHHHTTS---TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT
T ss_pred eccC------cchHHHHHHHHHhC---CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecc
Confidence 2222 24788999988753 235677777777777899988 88 88999999999999998865 210
Q ss_pred CCCCCCCCCCCcEEEEccccccCCCCCceEEEEEeCCCccccCC
Q 006746 316 MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 359 (632)
Q Consensus 316 m~~ldls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~~L~~ 359 (632)
+...+--...||+++++-----|+ | +|++.+++++++.+.+
T Consensus 250 ~~~~~~~gi~PDi~~~gK~lggG~-p--~~a~~~~~~i~~~~~~ 290 (427)
T d2gsaa_ 250 GGVQEKFGVTPDLTTLGKIIGGGL-P--VGAYGGKREIMQLVAP 290 (427)
T ss_dssp TCHHHHTTCCCSEEEECGGGGTTS-C--CEEEEECHHHHTTBTT
T ss_pred cchHHhcCCCHHHHhhhhccCCCc-c--eeeeeehHHHHHHhcc
Confidence 111111124799999886223444 4 4667788887765544
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=4.2e-08 Score=102.76 Aligned_cols=230 Identities=13% Similarity=0.052 Sum_probs=136.4
Q ss_pred hHHHHHHhhccC-cCCCCceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhH
Q 006746 92 QIDQIRAKEYYQ-LSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESG 170 (632)
Q Consensus 92 ~~d~iR~~ef~~-L~~~~~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~ 170 (632)
.++..|++..+. +++.--+|.|-.|..+.+..+.++....... | .....|+-..+.
T Consensus 16 ~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~-----~------------------~~~~~Y~p~~G~ 72 (397)
T d3tata_ 16 LMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ-----P------------------HGASLYLPMEGL 72 (397)
T ss_dssp HHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTS-----C------------------CSSBCCCCTTCC
T ss_pred HHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhC-----c------------------ccCCCCCCcccC
Confidence 445555544443 2223456888888888888888885432211 0 001112211111
Q ss_pred HHHHHHHHHHHHcCCCC----CCccEEEeCCHHHH----HHHHHhhCCCCCCCeEEEec-cccchhhHHHHHHHHhcCCE
Q 006746 171 LESAMKKRIMDFLNISE----NDYGMVFTANRTSA----FKLLAESYPFMSVKNLLTVY-DYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 171 ~~~~~R~~ia~~l~a~~----~ey~vvft~naT~a----l~lv~~sl~~~~gd~ilt~~-d~~s~~v~~~~~~a~~~G~~ 241 (632)
.+.|+.|++++.-.- ++..|+.+.+++.+ +.+++..+ +.+||+|++.. .+++ . ...++..|++
T Consensus 73 --~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~pgd~Vlv~~P~y~~--y---~~~~~~~G~~ 144 (397)
T d3tata_ 73 --NCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR-YFPESGVWVSDPTWEN--H---VAIFAGAGFE 144 (397)
T ss_dssp --HHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHH-HCSSCCCEECSSCCTT--H---HHHHHTTTCC
T ss_pred --HHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhh-cCCCCcceecccCccc--c---HHHHHHcCCE
Confidence 268888888775321 11145555544443 44455544 57899977653 4442 2 2234678999
Q ss_pred EEEEeccCC-ccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEeccccC-CCC
Q 006746 242 VMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG-PKD 315 (632)
Q Consensus 242 v~~v~~~~~-~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~~-g~~ 315 (632)
++.+|.+.+ ...++.+++.+.+... ++++++++++..+|+||..++.+ |+++|++++++++.|-+-.. -.+
T Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~ 221 (397)
T d3tata_ 145 VSTYPWYDEATNGVRFNDLLATLKTL---PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG 221 (397)
T ss_dssp CEECCCCCTTTSSCCHHHHHHHHTTC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSC
T ss_pred EEEEecchhhccccchHHHHHHhhhc---ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccC
Confidence 999998633 3346777777766543 24678999999999999999876 56789999999999987432 110
Q ss_pred --C-C-CC--CCCCCCCcEEEEccccccCCCCCceEEEEEeCCCcc
Q 006746 316 --M-D-SF--GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 316 --m-~-~l--dls~~~~Df~~~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
. . .+ .......=+++.|+-|.+|.+-.-+|++.+....++
T Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~ 267 (397)
T d3tata_ 222 MEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAE 267 (397)
T ss_dssp HHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTT
T ss_pred CcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhHHH
Confidence 0 0 00 001111237788899988853234588777766543
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=98.61 E-value=9.2e-07 Score=91.90 Aligned_cols=212 Identities=12% Similarity=0.064 Sum_probs=124.3
Q ss_pred ceEeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccccccccccchhHHHHHHHHHHHHHcC---C
Q 006746 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN---I 185 (632)
Q Consensus 109 ~vyLD~ag~gl~~~~~~~a~~~~~~~~~~~~P~~~~~~p~f~~~~~~~n~~s~~~~g~~~~~~~~~~R~~ia~~l~---a 185 (632)
-+|.|--|..+.++.+.+++....+... + +.|+...+. .+.|+.|++++. .
T Consensus 34 G~~~d~~g~~~~~~~V~~A~~~~~~~~~-----------------------~-~~Y~p~~G~--~~lr~aia~~~~~~~~ 87 (394)
T d2ay1a_ 34 GVYKDATGHTPIMRAVHAAEQRMLETET-----------------------T-KTYAGLSGE--PEFQKAMGELILGDGL 87 (394)
T ss_dssp CSCCCTTSCCCCCHHHHHHHHHHHHHCC-----------------------C-CCCCCSSCC--HHHHHHHHHHHHGGGC
T ss_pred CCccCCCCCCCCCHHHHHHHHHHhhCCC-----------------------C-CCCCCCCCC--HHHHHHHHHHHhcccc
Confidence 4688888888888888888654322100 0 011111100 256666666642 2
Q ss_pred CCCCccEEEeCCHHHHHHHHH--hhCCCCCCCeEEEe-ccccchhhHHHHHHHHhcCCEEEEEeccC-CccccCHHHHHH
Q 006746 186 SENDYGMVFTANRTSAFKLLA--ESYPFMSVKNLLTV-YDYESEAVEAMIRTSEKRGARVMSAEFSW-PRLRINSEKLRK 261 (632)
Q Consensus 186 ~~~ey~vvft~naT~al~lv~--~sl~~~~gd~ilt~-~d~~s~~v~~~~~~a~~~G~~v~~v~~~~-~~~~i~~~~l~~ 261 (632)
.......+.|.+++.+..+.+ ..+ ..+||.|+.+ ..++. . ...++..|++++.++... .....+.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gd~V~~p~p~~~~--y---~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (394)
T d2ay1a_ 88 KSETTATLATVGGTGALRQALELARM-ANPDLRVFVSDPTWPN--H---VSIMNFMGLPVQTYRYFDAETRGVDFEGMKA 161 (394)
T ss_dssp CGGGEEEEEEEHHHHHHHHHHHHHHH-HCTTCCEEEEESCCHH--H---HHHHHHHTCCEEEEECEETTTTEECHHHHHH
T ss_pred ccccccceeccCchHHHHHHHHHhhh-cCCceEEEEecccccc--h---HHHHHHcCCEEEEecccchhcccccchhHHH
Confidence 111223455556665544443 333 4789997654 34442 2 234566799999998753 233456677776
Q ss_pred HHHhcCcCCCceeEEEEeccCCCCccccchH----HHHHHhhCCcEEEEecccc-CCCCCC---C---CCCCCCCCcEEE
Q 006746 262 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL-GPKDMD---S---FGLSLVRPDFLI 330 (632)
Q Consensus 262 ~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~----i~~~a~~~g~~vlvDaaq~-~g~~m~---~---ldls~~~~Df~~ 330 (632)
.+.... +++.+++++-.+|+||..++.+ |+++|++++++++.|-+-. ...+.. + +.......-+++
T Consensus 162 ~~~~~~---~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T d2ay1a_ 162 DLAAAK---KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIA 238 (394)
T ss_dssp HHHTCC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHhhcc---cCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccc
Confidence 665432 3568999999999999999865 5678899999999998632 211100 0 000111123556
Q ss_pred EccccccCCCCCceEEEEEeCCCcc
Q 006746 331 CSFYQIFGENPSGFGCLFVKKSTVP 355 (632)
Q Consensus 331 ~S~hK~~G~~P~G~G~L~Vr~~~~~ 355 (632)
.|+-|.++.+-..+|.+.+....++
T Consensus 239 ~s~sk~~~~~G~R~G~~~~~~~~~~ 263 (394)
T d2ay1a_ 239 ASCSKNFGIYRERTGCLLALCADAA 263 (394)
T ss_dssp EECTTTTTCGGGCEEEEEEECSSHH
T ss_pred ccccccccCCcccccchhhchhHHH
Confidence 6777866643346788888776543
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.59 E-value=4.6e-06 Score=89.07 Aligned_cols=323 Identities=11% Similarity=0.013 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCC--CCCC----e-EEEeccccchhhHHHHHHHHhcCCE
Q 006746 169 SGLESAMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPF--MSVK----N-LLTVYDYESEAVEAMIRTSEKRGAR 241 (632)
Q Consensus 169 ~~~~~~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~--~~gd----~-ilt~~d~~s~~v~~~~~~a~~~G~~ 241 (632)
-+.+=+....|+++.|.+-. +.-.-.++|.....+.-+... +.+. . ++....++. .. .......+..
T Consensus 105 LQalfEfQtmi~eLTGMdva--NaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~ 178 (471)
T d1wyub1 105 LRLMWELGEYLKALTGMDAI--TLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHG-SN---PATASMAGYQ 178 (471)
T ss_dssp HHHHHHHHHHHHHHHTCSEE--ECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCT-HH---HHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHhCCCcc--ccccchHHHHHHHHHHHHHHHhhhcccccccccccCCccccc-ce---eeeeecccce
Confidence 36667899999999998621 010112444443333222111 1121 1 233444443 12 2334556788
Q ss_pred EEEEeccCCccccCHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccchH-HHHHHhhCCcEEEEeccccCCCCCCCCC
Q 006746 242 VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFG 320 (632)
Q Consensus 242 v~~v~~~~~~~~i~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~pl~-i~~~a~~~g~~vlvDaaq~~g~~m~~ld 320 (632)
++.++.+ ..+..+.+.+.....++ +..+++...++.-+.--..+ +++++|+.|..+++|++..... +..+.
T Consensus 179 ~~~~~~~-~~~~~~~~~~~~~~~~~------~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~-~~l~~ 250 (471)
T d1wyub1 179 VREIPSG-PEGEVDLEALKRELGPH------VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAI-MGWAR 250 (471)
T ss_dssp EEEECBC-TTSSBCHHHHHHHCSTT------EEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGT-TTTCC
T ss_pred eeccccc-ccccccchhhhhhhhcc------ccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhh-hhccc
Confidence 8888876 56678888887766553 35556655554444444577 8999999999999988643321 01122
Q ss_pred CCCCCCcEEEEccccccCC----CCCceEEEEEeCCCccccCCCCCCCceeecccccccccccccCCCCCCccccchhhh
Q 006746 321 LSLVRPDFLICSFYQIFGE----NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 396 (632)
Q Consensus 321 ls~~~~Df~~~S~hK~~G~----~P~G~G~L~Vr~~~~~~L~~~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 396 (632)
-...+.|.++++-++.||. +.+|+|++-++++....+.-...++. +.++... . ..+..-+..
T Consensus 251 p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~-------~~~~~~~------~-~REqhIrRe 316 (471)
T d1wyub1 251 PGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERG-------EEGFYLD------F-DRPKSIGRV 316 (471)
T ss_dssp HHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEEC-------SSCEEEE------C-CCTTCCCCS
T ss_pred cCcccccccccccccccccccccccccccceeehhhhhccCCCceecCC-------Ccccccc------C-CCcccccch
Confidence 2345779999999996543 12588999999987766654433210 0011000 0 000000000
Q ss_pred hhhccccCCCccchhhhhhcCCcccchhhHhhhhhhhhhhhhccCCCCCCCchhhhhHHHHHHhhCHHHHHHHHHHHHHH
Q 006746 397 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 476 (632)
Q Consensus 397 e~e~gt~~f~~~~~~~~~~~Gt~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aLd~~~~~Gl~~I~~r~~~L~~~ 476 (632)
...|.. .+.++. ...-+.++-..||..+.++....++|
T Consensus 317 --~actnq------------------aL~al~----------------------A~vYlsllG~~GL~elA~~~~~~A~Y 354 (471)
T d1wyub1 317 --RSFYGN------------------FLALVR----------------------AWAYIRTLGLEGLKKAAALAVLNARY 354 (471)
T ss_dssp --SSTTSC------------------HHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhh------------------HHHHHH----------------------HHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 011110 111221 00223344456899999999999999
Q ss_pred HHHHHHccCCCCCCCCCcEEEECCCCCCCCCcEEEEEEccCCCCccCHHHHHHHHHhCCcEEccCccCChHHHhHHHHhh
Q 006746 477 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 556 (632)
Q Consensus 477 L~~~L~~l~h~~~~G~p~v~Iygp~~~~~rg~ivaFnv~~~~G~~i~~~~V~kla~~~gI~lr~G~~c~~~~~~~~~~~~ 556 (632)
+.++|+.. | +++.-+. +.-+ -|.+...+| ++...|.+.+-++||.-.+. .+
T Consensus 355 la~~L~~~------G---~~~~~~~-~ff~----EFvv~~~~~--~~~~~i~k~L~~~G~~~~~~---------~~---- 405 (471)
T d1wyub1 355 LKELLKEK------G---YRVPYDG-PSMH----EFVAQPPEG--FRALDLAKGLLELGFHPPTV---------YF---- 405 (471)
T ss_dssp HHHHHHHT------T---CBCSSCS-SCCS----CEEEBCSTT--CCHHHHHHHHHHTTCCCCEE---------SC----
T ss_pred HHHHHhhc------C---ceeccCc-ceee----EEeecCCCC--CCHHHHHHHHHHcCCCCCcc---------cC----
Confidence 99999764 3 3332111 1111 155554443 67777776555577753211 00
Q ss_pred hhhhhhhhccccccccccccccCCCCCcEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 006746 557 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 612 (632)
Q Consensus 557 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~VRvSlg~~~t~eDV~rlv~~l~~~l~~ 612 (632)
+....+.+-|..--.+|.||||+|+++|++.+++
T Consensus 406 ----------------------p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e 439 (471)
T d1wyub1 406 ----------------------PLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 439 (471)
T ss_dssp ----------------------STTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ----------------------cCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 1112346778888899999999999999999886
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.27 E-value=1.1e-05 Score=84.97 Aligned_cols=170 Identities=9% Similarity=0.099 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHhhCCC-CCCCeEE-EeccccchhhHHHHHHHHh-----c---CCEEE
Q 006746 174 AMKKRIMDFLNISENDYGMVFTANRTSAFKLLAESYPF-MSVKNLL-TVYDYESEAVEAMIRTSEK-----R---GARVM 243 (632)
Q Consensus 174 ~~R~~ia~~l~a~~~ey~vvft~naT~al~lv~~sl~~-~~gd~il-t~~d~~s~~v~~~~~~a~~-----~---G~~v~ 243 (632)
+.-+++.+++.-.- ..|.|+.++|+|...+++--.. ...++|+ ....||......+ ..... . ...+.
T Consensus 87 ~la~~L~~~~~~~~--~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~ 163 (431)
T d1zoda1 87 DLATRLANITPPGL--DRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAA-SATYSAGRKGVGPAAVGSF 163 (431)
T ss_dssp HHHHHHHHHSCTTC--CEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHH-HTCCSSCCSSSCCCCTTEE
T ss_pred HHHHHHHHhCCccc--ceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhh-cccccccccccCCcccCce
Confidence 45556666654322 2799999999999987664322 2333455 4457776332221 11000 0 01122
Q ss_pred EEeccC---Cc-----ccc---CHHHHHHHHHhcCcCCCceeEEEEeccCCCCccccc----hH-HHHHHhhCCcEEEEe
Q 006746 244 SAEFSW---PR-----LRI---NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YL-WMRIAQENDWHILID 307 (632)
Q Consensus 244 ~v~~~~---~~-----~~i---~~~~l~~~i~~~~~~~~~~~Lv~~~~~sn~TG~~~p----l~-i~~~a~~~g~~vlvD 307 (632)
.++... +. ... +.+.+...+.... ...+..|.+--+....|.+.| ++ +-++|+++|+++++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~D 241 (431)
T d1zoda1 164 AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD 241 (431)
T ss_dssp EECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHC--CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE
T ss_pred eeeeecccccccccccchhhhhhHHHHHHHHHHhc--cccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEec
Confidence 232210 00 001 1233333333221 235666777667677788876 77 788999999999999
Q ss_pred ccccC-CCCCCCC---CCCCCCCcEEEEcccc-c-cCCCCCceEEEEEeCCCc
Q 006746 308 ACALG-PKDMDSF---GLSLVRPDFLICSFYQ-I-FGENPSGFGCLFVKKSTV 354 (632)
Q Consensus 308 aaq~~-g~~m~~l---dls~~~~Df~~~S~hK-~-~G~~P~G~G~L~Vr~~~~ 354 (632)
-++.+ |.. ... ..-...||+++++ | + -|+ | +|+++++++..
T Consensus 242 EV~tG~gRt-G~~~~~~~~gv~PDi~~~g--K~l~gG~-p--~~av~~~~~~~ 288 (431)
T d1zoda1 242 EAQTGVGRT-GTMFACQRDGVTPDILTLS--KTLGAGL-P--LAAIVTSAAIE 288 (431)
T ss_dssp CTTTTTTTT-SSSSTHHHHTCCCSEEEEC--HHHHTTS-S--CEEEEECHHHH
T ss_pred ccccccccc-ccccccccCCCCcchhccc--ccccccc-c--cceeeeeecch
Confidence 99885 421 111 1112478998887 6 3 344 4 45556665544
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