Citrus Sinensis ID: 006760

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MKAQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMGTFGGQGISGPSLDLDLLPGSSSTLPNLPYQQIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPSS
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccccEEEEEEcEEEEEEcHHHHHHHHcccHHHHHcccccccccEEEEEEEcccccccccEEEEEHHHHHHcccccccEEEEEEEEEEEEcccEEEEEEEEccccccccccccccccccEEEEEcccccEEEEEEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccEEEEEEEcccccccccEEEEEEEccccccccHHHHHHccccccccccHHccccccccHHHHccccccccccEEEEEccccccccEEEEEEEcccccccEEEEccccHHHHHHHHcccccccccccccccEEcccccccccccccccccccccccccccccEEEEEEEHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccccccEEEcHHHHHHHcccccccccccccEEEEEcccEEEEEcHHHHHHHHcccHHHHHHcHHHHHHcccEEEEccccccccccHEEEEEEEEccccccccHHHEEEEEEHHccccccEEEEEEEccccccccccccccccccEEEEEcccccEEEEEEEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccccccccEEEEEEEEEEccccHHHHHHHHcccccccHHHHHcccccHHHHHHcccccccccEEEEEEccccccccEEEEEEccccccccEEEEccccHHHHHHHHccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
mkaqheradncglraendkirCENIAIREALKnvicpscggppvtedsyfdEQKLRMENAQLKEELDRVSSIAAKYigrpisqlppvqpihissldltmgtfggqgisgpsldldllpgssstlpnlpyqqIVLSDMDKSLMTDIAANAMEELLRLLQtneplwmksstdgrdildldsyermfpranshlknpnvrtessrdsgvVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVIssgmmgghsGSLLLMYEELQVlspvvptrefYVLRYCQQIEQGSWAVVNvsydspqfssqcqshrfpsgcliqdlpngyskVTWVEhleiedrtpIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVsgtstrdlggvipspdgkrSMMKLAQRMVSSFCTSistsnrhrgttisglnEVGVRVTLhksmdpgqpngvvlnaattfwlpippqnvfnffkdertrpqwdvltngnaVQEVAhiangsnpgnCISVLRAINTSQNNMLILQEscidssgslvvycpvdlpainiamsgedpsyipllpsgftispdghldqgdgastssnvhgnmgsrssgSLISVAFQILVSSlpsaklnmeSVTTVNNLIGTTVQQIKAALNCPSS
mkaqheradncglraendkiRCENIAIREALKnvicpscggppvTEDSYFDEQKLRMENAQLKEELDRVSSIAAKYIgrpisqlppvQPIHISSLDLTMGTFGGQGISGPSLDLDLLPGSSSTLPNLPYQQIVLSDMDKSLMTDIAANAMEELLRLLQTneplwmksstdgRDILDLDSYERMFpranshlknpnvrtessrdsgVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMvsgtstrdlggvipSPDGKRSMMKLAQRMVSSFCTSistsnrhrgttisglNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPSS
MKAQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMGTFGGQGIsgpsldldllpgssstlpNLPYQQIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVIssgmmgghsgslllmYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPSS
****************NDKIRCENIAIREALKNVICPSCGGPPVT***Y*******************VSSIAAKYIGRPISQLPPVQPIHISSLDLTMGTFGGQGISG**LDLDL********PNLPYQQIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMK*******ILD****************************GVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVSGTSTRDLGG*********************FCTS*********TTISGLNEVGVRVTLHK******PNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFT******************************LISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAAL*****
*******ADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSS*********************************************************************LMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPR**********RTESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHK*****QPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPD**************************LISVAFQILVSSLP***LNMESVTTVNNLIGTTVQQIKAALNC***
*********NCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMGTFGGQGISGPSLDLDLLPGSSSTLPNLPYQQIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLK*********RDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDS**********RFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPSS
*****ERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKYIGRPISQL*PV******SLDLTM*TFGGQGISGPSLDLDLLPGSSSTLPNLPYQQIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDG**********************SGSLISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCP**
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MKAQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDxxxxxxxxxxxxxxxxxxxxxAAKYIGRPISQLPPVQPIHISSLDLTMGTFGGQGISGPSLDLDLLPGSSSTLPNLPYQQIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query632 2.2.26 [Sep-21-2011]
Q9FX31722 Homeobox-leucine zipper p yes no 0.982 0.860 0.690 0.0
Q9LMT8687 Homeobox-leucine zipper p no no 0.950 0.874 0.665 0.0
Q69T58710 Homeobox-leucine zipper p yes no 0.974 0.867 0.601 0.0
Q93V99743 Homeobox-leucine zipper p no no 0.969 0.825 0.513 1e-178
Q8RWU4762 Homeobox-leucine zipper p no no 0.979 0.812 0.500 1e-172
Q94C37721 Homeobox-leucine zipper p no no 0.946 0.829 0.486 1e-171
Q6ZAR0784 Homeobox-leucine zipper p yes no 0.960 0.774 0.489 1e-169
A2YR02749 Homeobox-leucine zipper p N/A no 0.917 0.774 0.481 1e-169
A3BPF2749 Homeobox-leucine zipper p no no 0.917 0.774 0.479 1e-169
Q0J9X2784 Homeobox-leucine zipper p no no 0.965 0.778 0.489 1e-168
>sp|Q9FX31|HDG11_ARATH Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=1 SV=1 Back     alignment and function desciption
 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/643 (69%), Positives = 521/643 (81%), Gaps = 22/643 (3%)

Query: 1   MKAQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENA 60
           +KAQHERADN  L+AENDKIRCENIAIREALK+ ICP+CGGPPV+ED YFDEQKLR+ENA
Sbjct: 87  LKAQHERADNSALKAENDKIRCENIAIREALKHAICPNCGGPPVSEDPYFDEQKLRIENA 146

Query: 61  QLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMGTFGGQGI--SGPSLDLDLLP 118
            L+EEL+R+S+IA+KY+GRPISQL  + P+HIS LDL+M +  G G    GPSLD DLLP
Sbjct: 147 HLREELERMSTIASKYMGRPISQLSTLHPMHISPLDLSMTSLTGCGPFGHGPSLDFDLLP 206

Query: 119 GSSSTL-PNLPYQ---QIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDG-RD 173
           GSS  + PN   Q    + +SDMDK +MT IA  AMEELLRLLQTNEPLW +  TDG RD
Sbjct: 207 GSSMAVGPNNNLQSQPNLAISDMDKPIMTGIALTAMEELLRLLQTNEPLWTR--TDGCRD 264

Query: 174 ILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVS 233
           IL+L SYE +FPR+++  KN N R E+SR SG+V MN +ALVDMFMDC KW ELFP+I++
Sbjct: 265 ILNLGSYENVFPRSSNRGKNQNFRVEASRSSGIVFMNAMALVDMFMDCVKWTELFPSIIA 324

Query: 234 MAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSY 293
            +KT+ VISSGM G H G+L L+YEE++VLSP+V TREF  LRYCQQ EQGSW VVNVSY
Sbjct: 325 ASKTLAVISSGMGGTHEGALHLLYEEMEVLSPLVATREFCELRYCQQTEQGSWIVVNVSY 384

Query: 294 DSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGA 353
           D PQF S  QS+RFPSGCLIQD+PNGYSKVTWVEH+E E++  +H LY+++I  G+AFGA
Sbjct: 385 DLPQFVSHSQSYRFPSGCLIQDMPNGYSKVTWVEHIETEEKELVHELYREIIHRGIAFGA 444

Query: 354 DRWLATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSNR 413
           DRW+ TLQRMCERFA L V  +S+RDLGGVI SP+GKRSMM+LAQRM+S++C S+S SN 
Sbjct: 445 DRWVTTLQRMCERFASLSVPASSSRDLGGVILSPEGKRSMMRLAQRMISNYCLSVSRSNN 504

Query: 414 HRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQW 473
            R T +S LNEVG+RVT HKS    +PNG VL AATTFWLP  PQNVFNF KDERTRPQW
Sbjct: 505 TRSTVVSELNEVGIRVTAHKS---PEPNGTVLCAATTFWLPNSPQNVFNFLKDERTRPQW 561

Query: 474 DVLTNGNAVQEVAHIANGSNPGNCISVLRAIN-TSQNNMLILQESCIDSSGSLVVYCPVD 532
           DVL+NGNAVQEVAHI+NGS+PGNCISVLR  N T  NNMLILQES  DSSG+ VVY PVD
Sbjct: 562 DVLSNGNAVQEVAHISNGSHPGNCISVLRGSNATHSNNMLILQESSTDSSGAFVVYSPVD 621

Query: 533 LPAINIAMSGEDPSYIPLLPSGFTISPDG---HLDQGDGASTSSNVHGNMGSRSSGSLIS 589
           L A+NIAMSGEDPSYIPLL SGFTISPDG   + +QG GASTSS       + +SGSLI+
Sbjct: 622 LAALNIAMSGEDPSYIPLLSSGFTISPDGNGSNSEQG-GASTSSGR-----ASASGSLIT 675

Query: 590 VAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPSS 632
           V FQI+VS+LP+AKLNMESV TVNNLIGTTV QIK AL+ P++
Sbjct: 676 VGFQIMVSNLPTAKLNMESVETVNNLIGTTVHQIKTALSGPTA 718
Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LMT8|HDG12_ARATH Homeobox-leucine zipper protein HDG12 OS=Arabidopsis thaliana GN=HDG12 PE=2 SV=1 Back     alignment and function description
>sp|Q69T58|ROC8_ORYSJ Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp. japonica GN=ROC8 PE=2 SV=2 Back     alignment and function description
>sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1 Back     alignment and function description
>sp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1 Back     alignment and function description
>sp|A2YR02|ROC7_ORYSI Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1 Back     alignment and function description
>sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1 Back     alignment and function description
>sp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
225464265715 PREDICTED: homeobox-leucine zipper prote 0.998 0.882 0.847 0.0
147856728717 hypothetical protein VITISV_009450 [Viti 0.998 0.880 0.847 0.0
51872287713 homeodomain protein HOX3 [Gossypium hirs 0.996 0.883 0.824 0.0
255574032713 homeobox protein, putative [Ricinus comm 0.988 0.876 0.847 0.0
224125934725 predicted protein [Populus trichocarpa] 0.992 0.864 0.824 0.0
356529444 896 PREDICTED: homeobox-leucine zipper prote 0.990 0.698 0.810 0.0
224118060711 predicted protein [Populus trichocarpa] 0.998 0.887 0.835 0.0
356561849718 PREDICTED: homeobox-leucine zipper prote 0.998 0.878 0.817 0.0
296088020674 unnamed protein product [Vitis vinifera] 0.901 0.845 0.850 0.0
356511234713 PREDICTED: homeobox-leucine zipper prote 0.995 0.882 0.761 0.0
>gi|225464265|ref|XP_002271012.1| PREDICTED: homeobox-leucine zipper protein HDG11-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1114 bits (2882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/636 (84%), Positives = 589/636 (92%), Gaps = 5/636 (0%)

Query: 1   MKAQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENA 60
           MKAQHERADNC LR ENDKIRCENIAIREALKNVICPSCGGPP+ EDSYFDEQKLR+ENA
Sbjct: 81  MKAQHERADNCALRVENDKIRCENIAIREALKNVICPSCGGPPIGEDSYFDEQKLRVENA 140

Query: 61  QLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMGTFGGQGI-SGPSLDLDLLPG 119
           QLKEELDRVSSIAAKYIGRPISQLPPVQP+HISSLDL+MG+FGGQG+ SGPSLDLDLLPG
Sbjct: 141 QLKEELDRVSSIAAKYIGRPISQLPPVQPVHISSLDLSMGSFGGQGMGSGPSLDLDLLPG 200

Query: 120 SSSTLPNLPYQQIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDS 179
           SSS +P LP+Q   +SDMDKSLM D+A NA++ELLRLLQTNEPLWMKS+TDGRD+L+L+S
Sbjct: 201 SSSAMPILPFQGTGISDMDKSLMADVAGNALDELLRLLQTNEPLWMKSTTDGRDVLNLES 260

Query: 180 YERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIE 239
           YER+FPRANSHLKNPNVR E+SRDSGVVIMN LALVD+FMD +KW+ELFPTIVSMA+T+E
Sbjct: 261 YERIFPRANSHLKNPNVRIEASRDSGVVIMNSLALVDIFMDSNKWMELFPTIVSMARTLE 320

Query: 240 VISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSP--- 296
           V+SSGMMGG SGSL LMY ELQVLS +VPTREFY LRYCQQIEQGSWA+V+VSYD P   
Sbjct: 321 VLSSGMMGGQSGSLQLMYGELQVLSSLVPTREFYFLRYCQQIEQGSWAIVDVSYDFPRDN 380

Query: 297 QFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRW 356
           QF+ Q  SHR PSGCLIQD+PNGYSKVTWVEH+EIED+TP HRLY+DLI  G+AFGA+RW
Sbjct: 381 QFAPQNPSHRLPSGCLIQDMPNGYSKVTWVEHVEIEDKTPTHRLYRDLIHRGLAFGAERW 440

Query: 357 LATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSNRHRG 416
           LATLQRMCERFACLMV GTSTRDLGGVIPSPDGKRSMMKLAQRMV++FC SISTSN HR 
Sbjct: 441 LATLQRMCERFACLMVKGTSTRDLGGVIPSPDGKRSMMKLAQRMVNNFCASISTSNGHRW 500

Query: 417 TTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVL 476
           TT+SGLNEVGVRVT+HK+ DPGQPNGVVL+AATT WLP+ PQNVFNFF+DERTRPQWDVL
Sbjct: 501 TTLSGLNEVGVRVTIHKNTDPGQPNGVVLSAATTIWLPVSPQNVFNFFRDERTRPQWDVL 560

Query: 477 TNGNAVQEVAHIANGSNPGNCISVLRAINTSQNNMLILQESCIDSSGSLVVYCPVDLPAI 536
           +NGNAVQEVAHIANG +PGNCISVLRA NTSQNNMLILQESCIDSSGSLV+YCPVDLPAI
Sbjct: 561 SNGNAVQEVAHIANGPHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVIYCPVDLPAI 620

Query: 537 NIAMSGEDPSYIPLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILV 596
           NIAMSGEDPSYIPLLPSGFTISPDG LDQGDGAS+SS+   +MG RS GSLI+V FQILV
Sbjct: 621 NIAMSGEDPSYIPLLPSGFTISPDGRLDQGDGASSSSSTTASMG-RSGGSLITVVFQILV 679

Query: 597 SSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPSS 632
           SSLPSAKLN+ESVTTVNNLIG TVQQIKAALNCPSS
Sbjct: 680 SSLPSAKLNLESVTTVNNLIGNTVQQIKAALNCPSS 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147856728|emb|CAN83483.1| hypothetical protein VITISV_009450 [Vitis vinifera] Back     alignment and taxonomy information
>gi|51872287|gb|AAU12247.1| homeodomain protein HOX3 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255574032|ref|XP_002527933.1| homeobox protein, putative [Ricinus communis] gi|223532666|gb|EEF34449.1| homeobox protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224125934|ref|XP_002329753.1| predicted protein [Populus trichocarpa] gi|222870661|gb|EEF07792.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356529444|ref|XP_003533302.1| PREDICTED: homeobox-leucine zipper protein HDG11-like [Glycine max] Back     alignment and taxonomy information
>gi|224118060|ref|XP_002317722.1| predicted protein [Populus trichocarpa] gi|222858395|gb|EEE95942.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356561849|ref|XP_003549189.1| PREDICTED: homeobox-leucine zipper protein HDG11-like [Glycine max] Back     alignment and taxonomy information
>gi|296088020|emb|CBI35303.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511234|ref|XP_003524332.1| PREDICTED: homeobox-leucine zipper protein HDG11-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
TAIR|locus:2206880722 HDG11 "AT1G73360" [Arabidopsis 0.981 0.858 0.663 9.1e-219
TAIR|locus:2030913687 HDG12 "homeodomain GLABROUS 12 0.881 0.810 0.648 6.5e-193
TAIR|locus:2135368743 PDF2 "AT4G04890" [Arabidopsis 0.969 0.825 0.502 5.3e-159
TAIR|locus:2207235721 HDG2 "AT1G05230" [Arabidopsis 0.754 0.661 0.493 2e-158
TAIR|locus:2119048762 ATML1 "AT4G21750" [Arabidopsis 0.979 0.812 0.488 4.4e-155
TAIR|locus:2127008802 ANL2 "ANTHOCYANINLESS 2" [Arab 0.955 0.753 0.464 6.3e-140
TAIR|locus:2098866808 HDG1 "AT3G61150" [Arabidopsis 0.985 0.771 0.439 4.6e-137
TAIR|locus:2145116682 HDG7 "AT5G52170" [Arabidopsis 0.718 0.665 0.435 2.5e-118
TAIR|locus:2097770699 HDG8 "AT3G03260" [Arabidopsis 0.943 0.852 0.378 1.1e-110
TAIR|locus:2167230718 HDG9 "AT5G17320" [Arabidopsis 0.756 0.665 0.403 1.9e-108
TAIR|locus:2206880 HDG11 "AT1G73360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2113 (748.9 bits), Expect = 9.1e-219, P = 9.1e-219
 Identities = 427/644 (66%), Positives = 500/644 (77%)

Query:     1 MKAQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENA 60
             +KAQHERADN  L+AENDKIRCENIAIREALK+ ICP+CGGPPV+ED YFDEQKLR+ENA
Sbjct:    87 LKAQHERADNSALKAENDKIRCENIAIREALKHAICPNCGGPPVSEDPYFDEQKLRIENA 146

Query:    61 QLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTM------GTFGGQGIXXXXXXX 114
              L+EEL+R+S+IA+KY+GRPISQL  + P+HIS LDL+M      G FG  G        
Sbjct:   147 HLREELERMSTIASKYMGRPISQLSTLHPMHISPLDLSMTSLTGCGPFG-HGPSLDFDLL 205

Query:   115 XXXXXXXXXXXNLPYQ-QIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDG-R 172
                        NL  Q  + +SDMDK +MT IA  AMEELLRLLQTNEPLW +  TDG R
Sbjct:   206 PGSSMAVGPNNNLQSQPNLAISDMDKPIMTGIALTAMEELLRLLQTNEPLWTR--TDGCR 263

Query:   173 DILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIV 232
             DIL+L SYE +FPR+++  KN N R E+SR SG+V MN +ALVDMFMDC KW ELFP+I+
Sbjct:   264 DILNLGSYENVFPRSSNRGKNQNFRVEASRSSGIVFMNAMALVDMFMDCVKWTELFPSII 323

Query:   233 SMAKTIEVIXXXXXXXXXXXXXXXYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVS 292
             + +KT+ VI               YEE++VLSP+V TREF  LRYCQQ EQGSW VVNVS
Sbjct:   324 AASKTLAVISSGMGGTHEGALHLLYEEMEVLSPLVATREFCELRYCQQTEQGSWIVVNVS 383

Query:   293 YDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFG 352
             YD PQF S  QS+RFPSGCLIQD+PNGYSKVTWVEH+E E++  +H LY+++I  G+AFG
Sbjct:   384 YDLPQFVSHSQSYRFPSGCLIQDMPNGYSKVTWVEHIETEEKELVHELYREIIHRGIAFG 443

Query:   353 ADRWLATLQRMCERFACLMVSGTSTRDLGGVIPSPDGKRSMMKLAQRMVSSFCTSISTSN 412
             ADRW+ TLQRMCERFA L V  +S+RDLGGVI SP+GKRSMM+LAQRM+S++C S+S SN
Sbjct:   444 ADRWVTTLQRMCERFASLSVPASSSRDLGGVILSPEGKRSMMRLAQRMISNYCLSVSRSN 503

Query:   413 RHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQ 472
               R T +S LNEVG+RVT HKS  P +PNG VL AATTFWLP  PQNVFNF KDERTRPQ
Sbjct:   504 NTRSTVVSELNEVGIRVTAHKS--P-EPNGTVLCAATTFWLPNSPQNVFNFLKDERTRPQ 560

Query:   473 WDVLTNGNAVQEVAHIANGSNPGNCISVLRAIN-TSQNNMLILQESCIDSSGSLVVYCPV 531
             WDVL+NGNAVQEVAHI+NGS+PGNCISVLR  N T  NNMLILQES  DSSG+ VVY PV
Sbjct:   561 WDVLSNGNAVQEVAHISNGSHPGNCISVLRGSNATHSNNMLILQESSTDSSGAFVVYSPV 620

Query:   532 DLPAINIAMSGEDPSYIPLLPSGFTISPDGH---LDQGDGASTSSNVHGNMGSRSSGSLI 588
             DL A+NIAMSGEDPSYIPLL SGFTISPDG+    +QG GASTSS   G   + +SGSLI
Sbjct:   621 DLAALNIAMSGEDPSYIPLLSSGFTISPDGNGSNSEQG-GASTSS---GR--ASASGSLI 674

Query:   589 SVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNCPSS 632
             +V FQI+VS+LP+AKLNMESV TVNNLIGTTV QIK AL+ P++
Sbjct:   675 TVGFQIMVSNLPTAKLNMESVETVNNLIGTTVHQIKTALSGPTA 718
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0010091 "trichome branching" evidence=IGI;IMP
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2030913 HDG12 "homeodomain GLABROUS 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135368 PDF2 "AT4G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207235 HDG2 "AT1G05230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119048 ATML1 "AT4G21750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127008 ANL2 "ANTHOCYANINLESS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098866 HDG1 "AT3G61150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145116 HDG7 "AT5G52170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097770 HDG8 "AT3G03260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167230 HDG9 "AT5G17320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q69T58ROC8_ORYSJNo assigned EC number0.60120.97460.8676yesno
Q9FX31HDG11_ARATHNo assigned EC number0.69050.98250.8601yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
cd08875229 cd08875, START_ArGLABRA2_like, C-terminal lipid-bi 1e-116
pfam01852205 pfam01852, START, START domain 8e-47
smart00234205 smart00234, START, in StAR and phosphatidylcholine 6e-38
cd00177193 cd00177, START, Lipid-binding START domain of mamm 1e-07
>gnl|CDD|176884 cd08875, START_ArGLABRA2_like, C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information 
 Score =  345 bits (886), Expect = e-116
 Identities = 132/231 (57%), Positives = 170/231 (73%), Gaps = 6/231 (2%)

Query: 139 KSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRT 198
           KS + ++A  AM+ELL+L Q  EPLW+KS     +IL+ D YERMFPR +   K     T
Sbjct: 1   KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPR-HGGSKPGGFTT 59

Query: 199 ESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYE 258
           E+SR  G+V+MN + LV++ MD +KW ELFP IVS AKT++VIS+G  G  +G+L LMY 
Sbjct: 60  EASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYA 119

Query: 259 ELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDS----PQFSSQCQSHRFPSGCLIQ 314
           ELQV SP+VPTREFY LRYC+Q+E G WAVV+VS D     P  +S  +  R PSGCLIQ
Sbjct: 120 ELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQ 179

Query: 315 DLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365
           D+PNGYSKVTWVEH+E++++ P+H LY+ L+ SG+AFGA RW+ATLQR CE
Sbjct: 180 DMPNGYSKVTWVEHVEVDEK-PVHLLYRYLVSSGLAFGATRWVATLQRQCE 229

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. Length = 229
>gnl|CDD|216740 pfam01852, START, START domain Back     alignment and domain information
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 100.0
smart00234206 START in StAR and phosphatidylcholine transfer pro 99.73
PF01852206 START: START domain; InterPro: IPR002913 START (St 99.72
cd00177193 START Lipid-binding START domain of mammalian STAR 99.29
cd08871222 START_STARD10-like Lipid-binding START domain of m 99.18
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 99.05
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 99.02
cd08904204 START_STARD6-like Lipid-binding START domain of ma 98.85
cd08903208 START_STARD5-like Lipid-binding START domain of ma 98.72
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 98.72
cd08905209 START_STARD1-like Cholesterol-binding START domain 98.64
cd08909205 START_STARD13-like C-terminal lipid-binding START 98.55
PLN00188719 enhanced disease resistance protein (EDR2); Provis 98.5
cd08906209 START_STARD3-like Cholesterol-binding START domain 98.34
cd08910207 START_STARD2-like Lipid-binding START domain of ma 98.23
cd08902202 START_STARD4-like Lipid-binding START domain of ma 98.12
cd08870209 START_STARD2_7-like Lipid-binding START domain of 98.09
cd08908204 START_STARD12-like C-terminal lipid-binding START 98.04
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 98.03
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 97.95
cd08874205 START_STARD9-like C-terminal START domain of mamma 97.87
cd08911207 START_STARD7-like Lipid-binding START domain of ma 97.74
cd08907205 START_STARD8-like C-terminal lipid-binding START d 97.74
cd08872235 START_STARD11-like Ceramide-binding START domain o 97.71
cd08873235 START_STARD14_15-like Lipid-binding START domain o 97.21
cd08913240 START_STARD14-like Lipid-binding START domain of m 96.67
cd08871222 START_STARD10-like Lipid-binding START domain of m 96.59
cd08914236 START_STARD15-like Lipid-binding START domain of m 96.59
cd08874205 START_STARD9-like C-terminal START domain of mamma 96.1
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 95.95
cd08904204 START_STARD6-like Lipid-binding START domain of ma 95.83
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 95.25
cd00177193 START Lipid-binding START domain of mammalian STAR 95.15
cd08907205 START_STARD8-like C-terminal lipid-binding START d 94.8
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 94.5
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 94.37
TIGR00219283 mreC rod shape-determining protein MreC. MreC (mur 94.15
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 93.46
cd08903208 START_STARD5-like Lipid-binding START domain of ma 93.45
cd08906209 START_STARD3-like Cholesterol-binding START domain 93.35
smart00234206 START in StAR and phosphatidylcholine transfer pro 93.35
PF07407420 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: 93.03
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 92.9
cd08911207 START_STARD7-like Lipid-binding START domain of ma 91.7
PRK13922276 rod shape-determining protein MreC; Provisional 91.34
cd08870209 START_STARD2_7-like Lipid-binding START domain of 90.63
cd08902202 START_STARD4-like Lipid-binding START domain of ma 90.23
PRK1542279 septal ring assembly protein ZapB; Provisional 90.2
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 90.19
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 89.79
cd08908204 START_STARD12-like C-terminal lipid-binding START 89.4
cd08873235 START_STARD14_15-like Lipid-binding START domain o 89.16
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 89.07
cd08909205 START_STARD13-like C-terminal lipid-binding START 88.44
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 88.28
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 87.01
PF01852206 START: START domain; InterPro: IPR002913 START (St 86.69
cd08864208 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- 86.43
KOG2761219 consensus START domain-containing proteins involve 85.58
PRK14872337 rod shape-determining protein MreC; Provisional 85.57
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 85.39
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 84.5
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 84.37
cd08914236 START_STARD15-like Lipid-binding START domain of m 84.37
cd08910207 START_STARD2-like Lipid-binding START domain of ma 82.64
PF1271186 Kinesin-relat_1: Kinesin motor; InterPro: IPR02465 80.83
COG1792284 MreC Cell shape-determining protein [Cell envelope 80.41
PRK10724158 hypothetical protein; Provisional 80.32
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information 
Probab=100.00  E-value=3.6e-91  Score=698.75  Aligned_cols=225  Identities=58%  Similarity=0.997  Sum_probs=218.7

Q ss_pred             hhHHHHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHh
Q 006760          139 KSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMF  218 (632)
Q Consensus       139 k~~~~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~l  218 (632)
                      |+++++||++||+||++||++++|||++++++++|+||+|||.++||+..+ .++.||++|||||||+|+||+.+|||+|
T Consensus         1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~-~~~~~~~~eASR~~glV~m~~~~lVe~l   79 (229)
T cd08875           1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGG-SKPGGFTTEASRACGLVMMNAIKLVEIL   79 (229)
T ss_pred             ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCC-CCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence            688999999999999999999999999999888999999999999999988 8899999999999999999999999999


Q ss_pred             CCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCCC-
Q 006760          219 MDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQ-  297 (632)
Q Consensus       219 mD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~-  297 (632)
                      ||++||.+|||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+ 
T Consensus        80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~  159 (229)
T cd08875          80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT  159 (229)
T ss_pred             hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999873 


Q ss_pred             ---CCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760          298 ---FSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE  365 (632)
Q Consensus       298 ---~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce  365 (632)
                         ...++||||+|||||||||+|||||||||||+|||++. +|.+||++++||+||||+||+++||||||
T Consensus       160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~-~~~l~~~l~~sg~AfgA~rw~a~lqRqce  229 (229)
T cd08875         160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKP-VHLLYRYLVSSGLAFGATRWVATLQRQCE  229 (229)
T ss_pred             CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCc-ccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence               23578999999999999999999999999999999997 99999999999999999999999999997

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>TIGR00219 mreC rod shape-determining protein MreC Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>PRK13922 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] Back     alignment and domain information
>PRK14872 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 2e-07
2pso_A237 STAR-related lipid transfer protein 13; alpha and 3e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 72/532 (13%), Positives = 155/532 (29%), Gaps = 187/532 (35%)

Query: 129 YQQIVLSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRAN 188
           Y+ I LS  + + + +     ++++ + + + E +          I              
Sbjct: 18  YKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEI--------DHI-------------- 54

Query: 189 SHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCS-----KWVELFPTIVSMAKTIEVISS 243
             + + +  + + R    ++     +V  F++       K+      ++S  KT +   S
Sbjct: 55  --IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF------LMSPIKTEQRQPS 106

Query: 244 GMMGGHSGSLLLMYEELQVLSPVVPTRE--FYVLRYC-QQIE-------QG------SWA 287
            M   +      +Y + QV +    +R   +  LR    ++         G      +W 
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 288 VVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQS 347
            ++V          C S++      +Q   +   K+ W                   +  
Sbjct: 167 ALDV----------CLSYK------VQCKMDF--KIFW-------------------LNL 189

Query: 348 GMAFGADRWLATLQRMCERFACLMVSGTSTRDLGGVIPSP-----DGKRSMMKLAQ---- 398
                 +  L  LQ++  +      + TS  D    I           R ++K       
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDP---NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 399 ----------RMVSSF---CTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVL 445
                     +  ++F   C  + T+ R +  T    + +    T H S+D         
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTT-RFKQVT----DFLSAATTTHISLDHHSM----- 296

Query: 446 NAATTFWLPIPPQNVFNFFKDERTRPQWDVLTN--GNAVQEVAHIANGSNPGNCISVLRA 503
                               DE  +    +L        Q++      +NP   +S++  
Sbjct: 297 ----------------TLTPDE-VK---SLLLKYLDCRPQDLPREVLTTNP-RRLSIIAE 335

Query: 504 -----INTSQN-------NMLILQESCIDSSG---------SLVVYCP--VDLPAINIA- 539
                + T  N        +  + ES ++             L V+ P    +P I ++ 
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLSL 394

Query: 540 ----MSGEDPSYI-------PLL---PSGFTIS-PDGHLDQGDGASTSSNVH 576
               +   D   +        L+   P   TIS P  +L+          +H
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Length = 231 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 99.84
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 99.28
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 99.26
2pso_A237 STAR-related lipid transfer protein 13; alpha and 99.2
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 99.04
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 99.01
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 98.72
3qsz_A189 STAR-related lipid transfer protein; structural ge 98.64
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 98.41
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 97.27
3qsz_A189 STAR-related lipid transfer protein; structural ge 96.7
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 96.17
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 96.14
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 95.88
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 95.49
2pso_A237 STAR-related lipid transfer protein 13; alpha and 95.28
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 94.78
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 93.56
2j5u_A255 MREC protein; bacterial cell shape determining pro 93.09
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 91.56
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 90.61
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 89.6
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 88.93
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 88.06
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 86.13
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.84  E-value=4.9e-20  Score=181.56  Aligned_cols=198  Identities=17%  Similarity=0.246  Sum_probs=156.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHH
Q 006760          138 DKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDM  217 (632)
Q Consensus       138 ~k~~~~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~  217 (632)
                      +++.+.++|++||+||+++++.. ..|....+.        +..++|.+...     +....+-|..++|.+++.++++.
T Consensus        20 ~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~--------~gv~v~~~~~~-----~~~~~~~k~~~~v~~~~~~v~~~   85 (231)
T 2r55_A           20 FQSMAAQMSEAVAEKMLQYRRDT-AGWKICREG--------NGVSVSWRPSV-----EFPGNLYRGEGIVYGTLEEVWDC   85 (231)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEECC--------SSEEEEEEECS-----SSSSEEEEEEEEESSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeC--------CCEEEEEEccC-----CCCCcEEEEEEEECCCHHHHHHH
Confidence            57889999999999999999754 789876432        22355533321     33357889999999999999999


Q ss_pred             hCC-----chhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeee--cccccccceeeEEEEeeeeecCCeEEEEE
Q 006760          218 FMD-----CSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQ--VLSPVVPTREFYVLRYCQQIEQGSWAVVN  290 (632)
Q Consensus       218 lmD-----~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~--v~SPLVP~Re~~fLRyckql~~G~WaVvD  290 (632)
                      ||+     +.+|-+.|    .+++.++.++.        .-.++| ++.  .++++|++|||.++||+++.++|.|+|+.
T Consensus        86 l~~~d~~~r~~Wd~~~----~~~~vle~i~~--------~~~i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~  152 (231)
T 2r55_A           86 VKPAVGGLRVKWDENV----TGFEIIQSITD--------TLCVSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNA  152 (231)
T ss_dssp             HCC--CCSHHHHCTTC----SEEEEEEECSS--------SEEEEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEE
T ss_pred             HHhhCcchhhhhcccc----ceeEEEEEcCC--------CEEEEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEE
Confidence            977     88998743    36676666641        123444 333  45579999999999999999999999999


Q ss_pred             EecCCCC--C-CCccceeccCCcceEEeCC--CCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760          291 VSYDSPQ--F-SSQCQSHRFPSGCLIQDLP--NGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE  365 (632)
Q Consensus       291 vSld~~~--~-~~~~r~rrlPSGclIq~~~--nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce  365 (632)
                      .|++...  + ..++|++..+|||+||+++  +|.|+|||+.|++..-+.  |   +.++++.++.++.+|++.|+++|+
T Consensus       153 ~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P---~~lvn~~~~~~~~~~~~~Lr~~~~  227 (231)
T 2r55_A          153 THVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYL--P---QNVVDSFFPRSMTRFYANLQKAVK  227 (231)
T ss_dssp             EECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSC--C---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCCc--c---HHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9998542  2 2469999999999999998  789999999999998765  3   688899999999999999999998


Q ss_pred             HH
Q 006760          366 RF  367 (632)
Q Consensus       366 rl  367 (632)
                      .+
T Consensus       228 ~~  229 (231)
T 2r55_A          228 QF  229 (231)
T ss_dssp             GG
T ss_pred             Hh
Confidence            54
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 98.99
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 98.63
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 98.55
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 98.46
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 95.08
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 95.07
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 94.62
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 93.72
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 93.0
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 90.86
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 88.39
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=3.2e-09  Score=99.32  Aligned_cols=192  Identities=14%  Similarity=0.159  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCCchh
Q 006760          144 DIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSK  223 (632)
Q Consensus       144 ~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD~~~  223 (632)
                      .+|.+..++|++..+..+-.|-...+..       . .++|.+..     .+...-.-|..++|...+.++++.|.|.+.
T Consensus         2 ~~~~~~~~~l~~~~~~~~~~W~~~~~~~-------~-v~v~~~~~-----~~~~~~~~r~~~~i~~~~~~v~~~l~d~~~   68 (199)
T d1jssa_           2 SISTKLQNTLIQYHSIEEDEWRVAKKAK-------D-VTVWRKPS-----EEFNGYLYKAQGVMDDVVNNVIDHIRPGPW   68 (199)
T ss_dssp             THHHHHHHHHHHHTTSCGGGCEEEEEET-------T-EEEEEEEC-----SSSSSEEEEEEEEESSCHHHHHHHHSSSTT
T ss_pred             cHHHHHHHHHHHhcCcCcCCCeEEEecC-------C-EEEEEEEc-----CCCCcEEEEEEEEeCCCHHHHHHHHhChhh
Confidence            4688999999999999999998754221       1 13332221     233345689999999999999999999877


Q ss_pred             hhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeee-cccccccceeeEEEEeeeeecCCeEEEEEEecCCCCC-CCc
Q 006760          224 WVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQ-VLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQF-SSQ  301 (632)
Q Consensus       224 W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~-v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~~-~~~  301 (632)
                      +.+-.|.+ ..++.++.++.      +  ..++|--+. .+-|++..|||.++|++.+.+++. +++.++.+.... ...
T Consensus        69 ~~~Wd~~~-~~~~~le~~~~------~--~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~~~-~~~~~~~~~~p~~~~~  138 (199)
T d1jssa_          69 RLDWDRLM-TSLDVLEHFEE------N--CCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGL-LSCGVSVEWSETRPEF  138 (199)
T ss_dssp             HHHHCSSE-EEEEEEEECST------T--EEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEE-EEEEEECCCCCCCTTS
T ss_pred             hhhcccch-heEEEEEEcCC------C--cEEEEEEEcccCCCCcCCcEEEEEEEEEEcCCcE-EEEEEecCCCCCCCce
Confidence            77666643 45555554431      2  233443332 467889999999999999988885 456687776543 346


Q ss_pred             cceeccCCcceEEeCCCC--ceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHH
Q 006760          302 CQSHRFPSGCLIQDLPNG--YSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRM  363 (632)
Q Consensus       302 ~r~rrlPSGclIq~~~nG--~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~  363 (632)
                      +|+..+.+|++|++.++|  +|+|||+-|++..-+-  |.   -+++..+.-.-.+++..|+++
T Consensus       139 VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~---~lvn~~~~~~~~~~~~~Lr~~  197 (199)
T d1jssa_         139 VRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMI--PQ---SAVDTAMASTLANFYSDLRKG  197 (199)
T ss_dssp             EECEECSEEEEEEEETTEEEEEEEEEEECEECCSCC--CH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCCC--cH---HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988  8999999999987554  22   233333322233455555554
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure