Citrus Sinensis ID: 006763

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPV
cccccccHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHHHHccccHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccc
ccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHcEEEEEEcccccEEEHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccEccccHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccc
mtvgkdvsSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTfvkdsqdpnpLIRALAVRTMGCIRVDKITEYLcdplqrclkdddpyvRKTAAICVAKLYDINAELVEDRGFLESLKdlisdnnpmVVANAVAALAEIeenssrpifeiTSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERvtprlqhaNCAVVLSAVKMILQQMELITSTDVVRNLCkkmapplvtllsaepeIQYVALRNINLIVQRRPTILAHEIKVFFckyndpiyvkMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESldtldepeaKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLkkptegpqQMIQVVLNNatvetdnpdlrdRAYIYWRLLstdpeaakdvvlaekpvisddsnqldpSLLDELLANIATLssvyhkppeaFVTRVKTtasrtddedypngseqgysdapthvadegaspqtsssnapyaatrqpapppaapvsppvpdllgdligldnsaaivpadqaaaspv
mtvgkdvsslfTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTfvkdsqdpnPLIRALAVRTMGCIRVDKITEYLCDPlqrclkdddpyVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIvervtprlqhANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEyatevdvdfVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLnnatvetdnpdlRDRAYIYWRLLSTDPEAAKDVVLAEkpvisddsnqLDPSLLDELLANIATLssvyhkppeafVTRVKTtasrtddedypngSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPV
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDnnpmvvanavaalaeieenSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADellesflesfpeepAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNapyaatrqpapppaapvsppvpDLLGDLIGLDNSAAIVPADQAAASPV
********SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPV**********SLLDELLANIATLSSVYHKPPEAFV*******************************************************************************************
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLA****************LDELLANIATLSSVYHKPPE**********************************************************************************************
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHV****************************PVSPPVPDLLGDLIGLDNSAAIVPADQAAASPV
****KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRV*************************************************************************S**************
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MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query632 2.2.26 [Sep-21-2011]
O81742 893 Beta-adaptin-like protein yes no 0.973 0.688 0.904 0.0
Q9SUS3 894 Beta-adaptin-like protein no no 0.973 0.687 0.913 0.0
Q10567 949 AP-1 complex subunit beta yes no 0.903 0.601 0.713 0.0
O35643 943 AP-1 complex subunit beta yes no 0.919 0.616 0.705 0.0
Q54X82 942 AP-1 complex subunit beta yes no 0.868 0.582 0.734 0.0
P52303 949 AP-1 complex subunit beta yes no 0.854 0.569 0.749 0.0
Q9DBG3 937 AP-2 complex subunit beta no no 0.884 0.596 0.714 0.0
P63009 937 AP-2 complex subunit beta no no 0.884 0.596 0.714 0.0
P62944 937 AP-2 complex subunit beta no no 0.884 0.596 0.714 0.0
P63010 937 AP-2 complex subunit beta no no 0.884 0.596 0.714 0.0
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 Back     alignment and function desciption
 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/626 (90%), Positives = 586/626 (93%), Gaps = 11/626 (1%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct: 43  MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRG
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
           FLE+LKDLISDNNPMVVANAVAALAEI+ENS+ PIFEI S  L+KLLTALNECTEWGQVF
Sbjct: 163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           ILDALSRYKA+D REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV+RNLCK
Sbjct: 223 ILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCK 282

Query: 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
           KMAPPLVTLLSAEPEIQYVALRNINLIVQ+RPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct: 283 KMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query: 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
           IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct: 343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query: 361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
           VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct: 403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query: 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
           DELLESFLE+FPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD
Sbjct: 463 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 522

Query: 481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
           RAYIYWRLLSTDPEAAKDVVLAEKPVI+DDSNQLDPSLLDELLANI+TLSSVYHKPPEAF
Sbjct: 523 RAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAF 582

Query: 541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAP 600
           VTR+KTT  +T+DEDY  GSE GY +A  +  D  ASP   S+   Y      AP     
Sbjct: 583 VTRLKTTVQKTEDEDYVEGSETGYPEASGNPVDGAASP---SATTGYVTKLAAAP----- 634

Query: 601 VSPPVPDLLGDLIGLDNSAAIVPADQ 626
              PVPDLLGDL+G DN AAIVP D+
Sbjct: 635 --APVPDLLGDLMGSDN-AAIVPVDE 657
Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SUS3|APBLB_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana GN=BETAB-AD PE=1 SV=1 Back     alignment and function description
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2 Back     alignment and function description
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2 Back     alignment and function description
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1 Back     alignment and function description
>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 Back     alignment and function description
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
224074998 904 predicted protein [Populus trichocarpa] 0.996 0.696 0.927 0.0
224053869 904 predicted protein [Populus trichocarpa] 0.988 0.691 0.923 0.0
297742217 920 unnamed protein product [Vitis vinifera] 0.987 0.678 0.928 0.0
225426194 903 PREDICTED: beta-adaptin-like protein C [ 0.987 0.691 0.928 0.0
356497341 891 PREDICTED: beta-adaptin-like protein C-l 0.969 0.687 0.924 0.0
449453523 907 PREDICTED: beta-adaptin-like protein C-l 0.990 0.690 0.902 0.0
356543841 915 PREDICTED: beta-adaptin-like protein C-l 0.987 0.681 0.909 0.0
356543839 898 PREDICTED: beta-adaptin-like protein C-l 0.987 0.694 0.909 0.0
255564498 903 AP-2 complex subunit beta-1, putative [R 0.982 0.687 0.931 0.0
356539170 898 PREDICTED: beta-adaptin-like protein C-l 0.984 0.692 0.920 0.0
>gi|224074998|ref|XP_002304511.1| predicted protein [Populus trichocarpa] gi|222841943|gb|EEE79490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1168 bits (3022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/634 (92%), Positives = 608/634 (95%), Gaps = 4/634 (0%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct: 43  MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 162

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
           FLESLKDLISDNNPMVVANAVAALAEI++NS RPIFEITSHTLSKLLTALNECTEWGQVF
Sbjct: 163 FLESLKDLISDNNPMVVANAVAALAEIQDNSVRPIFEITSHTLSKLLTALNECTEWGQVF 222

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME+ITSTDVVRNLCK
Sbjct: 223 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEIITSTDVVRNLCK 282

Query: 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
           KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct: 283 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query: 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
           IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct: 343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query: 361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
           VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct: 403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query: 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
           DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNAT+ETDNPDLRD
Sbjct: 463 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATMETDNPDLRD 522

Query: 481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
           RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF
Sbjct: 523 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 582

Query: 541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPA-A 599
           VTRVKT A +T+D++Y  GSE GYS++  H AD  ASP TS+SN PYA  RQ AP P+ +
Sbjct: 583 VTRVKTAAQKTEDDEYAEGSEAGYSESSAHTADGAASPPTSASNVPYAGARQAAPAPSTS 642

Query: 600 PVSPPVPDLLGDLIGLDNSAAIVPADQAA--ASP 631
           P + P+PDL+GDL+ +DNS A+VP DQ +  ASP
Sbjct: 643 PPAAPLPDLMGDLLDMDNS-AMVPVDQPSTPASP 675

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053869|ref|XP_002298020.1| predicted protein [Populus trichocarpa] gi|222845278|gb|EEE82825.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297742217|emb|CBI34366.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426194|ref|XP_002279641.1| PREDICTED: beta-adaptin-like protein C [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497341|ref|XP_003517519.1| PREDICTED: beta-adaptin-like protein C-like [Glycine max] Back     alignment and taxonomy information
>gi|449453523|ref|XP_004144506.1| PREDICTED: beta-adaptin-like protein C-like [Cucumis sativus] gi|449493156|ref|XP_004159208.1| PREDICTED: beta-adaptin-like protein C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543841|ref|XP_003540368.1| PREDICTED: beta-adaptin-like protein C-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356543839|ref|XP_003540367.1| PREDICTED: beta-adaptin-like protein C-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255564498|ref|XP_002523245.1| AP-2 complex subunit beta-1, putative [Ricinus communis] gi|223537541|gb|EEF39166.1| AP-2 complex subunit beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356539170|ref|XP_003538073.1| PREDICTED: beta-adaptin-like protein C-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
TAIR|locus:2117924 893 AT4G23460 [Arabidopsis thalian 0.973 0.688 0.843 1.4e-270
UNIPROTKB|Q10567 949 AP1B1 "AP-1 complex subunit be 0.854 0.569 0.710 2e-209
ZFIN|ZDB-GENE-061025-1 947 ap1b1 "adaptor-related protein 0.901 0.601 0.676 9.6e-209
FB|FBgn0010380 921 AP-1-2beta "Adaptor Protein co 0.985 0.676 0.636 5.3e-208
MGI|MGI:1096368 943 Ap1b1 "adaptor protein complex 0.854 0.572 0.710 6.8e-208
UNIPROTKB|F1NCI1 922 AP1B1 "Uncharacterized protein 0.854 0.585 0.710 8.6e-208
UNIPROTKB|F1NCR9 881 AP1B1 "Uncharacterized protein 0.854 0.612 0.710 8.6e-208
UNIPROTKB|E2RRJ6 939 AP1B1 "Uncharacterized protein 0.911 0.613 0.676 1.4e-207
UNIPROTKB|F1RFI2 947 AP1B1 "Uncharacterized protein 0.854 0.570 0.710 1.8e-207
UNIPROTKB|I3LV02 949 AP1B1 "Uncharacterized protein 0.854 0.569 0.710 1.8e-207
TAIR|locus:2117924 AT4G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2602 (921.0 bits), Expect = 1.4e-270, P = 1.4e-270
 Identities = 528/626 (84%), Positives = 547/626 (87%)

Query:     1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
             MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct:    43 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query:    61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
             LIRALAVRTMGCIRVDKITEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRG
Sbjct:   103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162

Query:   121 FLESLKDLISDXXXXXXXXXXXXXXXXXXXSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
             FLE+LKDLISD                   S+ PIFEI S  L+KLLTALNECTEWGQVF
Sbjct:   163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222

Query:   181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
             ILDALSRYKA+D REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV+RNLCK
Sbjct:   223 ILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCK 282

Query:   241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
             KMAPPLVTLLSAEPEIQYVALRNINLIVQ+RPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct:   283 KMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query:   301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
             IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct:   343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query:   361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
             VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct:   403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query:   421 DXXXXXXXXXXXXXXAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
             D              AQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD
Sbjct:   463 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 522

Query:   481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
             RAYIYWRLLSTDPEAAKDVVLAEKPVI+DDSNQLDPSLLDELLANI+TLSSVYHKPPEAF
Sbjct:   523 RAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAF 582

Query:   541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNXXXXXXXXXXXXXXXX 600
             VTR+KTT  +T+DEDY  GSE GY +A  +  D  ASP  ++                  
Sbjct:   583 VTRLKTTVQKTEDEDYVEGSETGYPEASGNPVDGAASPSATTG----------YVTKLAA 632

Query:   601 XXXXXXDLLGDLIGLDNSAAIVPADQ 626
                   DLLGDL+G DN AAIVP D+
Sbjct:   633 APAPVPDLLGDLMGSDN-AAIVPVDE 657
GO:0005634 "nucleus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|Q10567 AP1B1 "AP-1 complex subunit beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061025-1 ap1b1 "adaptor-related protein complex 1, beta 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0010380 AP-1-2beta "Adaptor Protein complex 1/2, beta subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1096368 Ap1b1 "adaptor protein complex AP-1, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCI1 AP1B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCR9 AP1B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRJ6 AP1B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFI2 AP1B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LV02 AP1B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O43079AP1B1_SCHPONo assigned EC number0.45340.95560.8843yesno
O81742APBLC_ARATHNo assigned EC number0.90410.97310.6886yesno
O35643AP1B1_MOUSENo assigned EC number0.70540.91930.6161yesno
P52303AP1B1_RATNo assigned EC number0.74950.85440.5690yesno
Q54X82AP1B_DICDINo assigned EC number0.73450.86860.5828yesno
Q10567AP1B1_HUMANNo assigned EC number0.71300.90340.6016yesno
Q9SUS3APBLB_ARATHNo assigned EC number0.91360.97310.6879nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 0.0
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 1e-149
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 1e-145
pfam12717171 pfam12717, Cnd1, non-SMC mitotic condensation comp 2e-42
COG5240 898 COG5240, SEC21, Vesicle coat complex COPI, gamma s 3e-10
pfam1364688 pfam13646, HEAT_2, HEAT repeats 6e-08
pfam1364688 pfam13646, HEAT_2, HEAT repeats 3e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-04
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 0.002
PRK00182160 PRK00182, tatB, sec-independent translocase; Provi 0.004
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  539 bits (1391), Expect = 0.0
 Identities = 205/498 (41%), Positives = 301/498 (60%), Gaps = 13/498 (2%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           + +G+D+S LF +VV  + + +  LK+L YLYL   A+  PDLAIL  N+  KD Q PNP
Sbjct: 33  IMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNP 92

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIR LA+RT+ CIRV ++   L   +++ L D DPYVRK AA+ + KLY  + +LV D  
Sbjct: 93  LIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRD-F 151

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
            +  LK+L+SD +P VV+ AVA L EI +N    + ++    + +L   L  C  W QV 
Sbjct: 152 LVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVK 211

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           IL  L+RY   D RE + ++E +   LQ++N AV+  AVK I   + L         L  
Sbjct: 212 ILRLLTRYAPQDPREPKELLEDILNLLQNSNNAVLYEAVKTI---IHLDPEP----ELIV 264

Query: 241 KMAPPLVTLLSAEPE-IQYVALRNINLIVQRRP-TILAHEIKVFFCKYNDPIYVKMEKLE 298
                L  LLS+  E ++YVALRN+N I+++ P  +   ++ +F  K +D I +++  L+
Sbjct: 265 LAVNALGRLLSSPDENLRYVALRNLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALD 324

Query: 299 IMIKLASDRNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELI 357
           ++ KL  + N+ +++ E  +Y +E+ D +F  K V+AIGR A K    AE CI VLLEL+
Sbjct: 325 LLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELL 384

Query: 358 KIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417
            +  +YVV E + VI+DI R+YP   E I+  LCE L+ ++ PEA+A+ +WI+GEY E I
Sbjct: 385 SLAGSYVVDEIVEVIRDIIRKYPELREYILEHLCELLEDIESPEARAAALWILGEYGELI 444

Query: 418 -DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ-MIQVVLNNATVETDN 475
            ++  +LL S LE F  E  +V+L LLTA VKL L  P E  Q  ++QVVL+ AT ++ +
Sbjct: 445 PNSPSDLLRSILEVFVLESLKVRLALLTALVKLSLTFPDEEVQNLIVQVVLSLATQDSSD 504

Query: 476 PDLRDRAYIYWRLLSTDP 493
            +LRDRA  Y RLLS   
Sbjct: 505 LELRDRAVEYLRLLSLAD 522

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|234681 PRK00182, tatB, sec-independent translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 100.0
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 100.0
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.51
PTZ00429746 beta-adaptin; Provisional 99.44
PRK09687280 putative lyase; Provisional 99.14
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.12
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.12
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.08
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 99.06
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.01
PRK09687280 putative lyase; Provisional 99.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.96
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.91
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.83
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.75
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.71
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.69
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 98.69
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.66
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.59
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.55
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.4
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.37
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.3
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.28
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.2
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.19
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.13
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.08
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 98.06
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.91
PF05804708 KAP: Kinesin-associated protein (KAP) 97.91
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.87
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 97.87
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.79
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.73
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.7
PF05804708 KAP: Kinesin-associated protein (KAP) 97.69
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.69
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.68
KOG18241233 consensus TATA-binding protein-interacting protein 97.64
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.63
KOG1242569 consensus Protein containing adaptin N-terminal re 97.62
TIGR02270410 conserved hypothetical protein. Members are found 97.61
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.57
KOG04141251 consensus Chromosome condensation complex Condensi 97.53
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.52
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.41
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.39
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.39
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.34
TIGR02270410 conserved hypothetical protein. Members are found 97.33
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.3
KOG1242569 consensus Protein containing adaptin N-terminal re 97.29
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.29
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.27
COG5096 757 Vesicle coat complex, various subunits [Intracellu 97.27
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.22
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.21
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 97.21
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.17
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.14
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.06
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.04
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.89
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.78
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 96.76
COG5098 1128 Chromosome condensation complex Condensin, subunit 96.71
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.7
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 96.7
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 96.64
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.5
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.48
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.46
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.43
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.35
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.34
COG50981128 Chromosome condensation complex Condensin, subunit 96.33
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.21
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.2
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 96.11
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.07
KOG0413 1529 consensus Uncharacterized conserved protein relate 96.02
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 95.99
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.89
KOG4224550 consensus Armadillo repeat protein VAC8 required f 95.88
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.87
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 95.86
KOG1820815 consensus Microtubule-associated protein [Cytoskel 95.85
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.73
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.71
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.68
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 95.58
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 95.53
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.5
KOG22741005 consensus Predicted importin 9 [Intracellular traf 95.47
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 95.28
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 95.16
KOG2025 892 consensus Chromosome condensation complex Condensi 95.06
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.04
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.99
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 94.69
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 94.61
KOG4413524 consensus 26S proteasome regulatory complex, subun 94.5
smart00638574 LPD_N Lipoprotein N-terminal Domain. 94.3
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 94.06
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 93.9
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 93.36
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.12
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 93.01
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.0
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 92.76
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 92.34
PF08167165 RIX1: rRNA processing/ribosome biogenesis 91.77
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 91.73
smart00638574 LPD_N Lipoprotein N-terminal Domain. 91.68
KOG2956516 consensus CLIP-associating protein [General functi 91.04
KOG0567289 consensus HEAT repeat-containing protein [General 90.38
KOG2933334 consensus Uncharacterized conserved protein [Funct 90.36
KOG1293678 consensus Proteins containing armadillo/beta-caten 90.07
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 89.85
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 89.41
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 89.34
KOG2062929 consensus 26S proteasome regulatory complex, subun 89.3
KOG2025 892 consensus Chromosome condensation complex Condensi 89.21
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 89.09
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 88.94
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 88.8
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 88.6
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 88.44
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 88.28
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 88.14
PF13251182 DUF4042: Domain of unknown function (DUF4042) 88.08
PF05536543 Neurochondrin: Neurochondrin 88.02
KOG04131529 consensus Uncharacterized conserved protein relate 87.88
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 87.64
PF05004309 IFRD: Interferon-related developmental regulator ( 87.63
KOG4413524 consensus 26S proteasome regulatory complex, subun 87.54
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 87.33
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 87.13
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 86.64
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 86.32
KOG2956516 consensus CLIP-associating protein [General functi 85.9
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 85.36
KOG0567289 consensus HEAT repeat-containing protein [General 85.12
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 85.08
cd06561197 AlkD_like A new structural DNA glycosylase. This d 84.98
COG5116926 RPN2 26S proteasome regulatory complex component [ 84.45
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 83.94
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 83.84
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 83.63
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 83.25
KOG2062929 consensus 26S proteasome regulatory complex, subun 83.15
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 82.98
COG5116926 RPN2 26S proteasome regulatory complex component [ 82.98
KOG4653982 consensus Uncharacterized conserved protein [Funct 82.29
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 82.29
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 82.01
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 81.77
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 81.61
PF08167165 RIX1: rRNA processing/ribosome biogenesis 81.55
cd03561133 VHS VHS domain family; The VHS domain is present i 81.47
PF14676158 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4 80.96
KOG1222791 consensus Kinesin associated protein KAP [Intracel 80.86
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 80.64
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 80.22
KOG1243690 consensus Protein kinase [General function predict 80.13
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-116  Score=992.30  Aligned_cols=608  Identities=36%  Similarity=0.637  Sum_probs=547.6

Q ss_pred             CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763            1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE   80 (632)
Q Consensus         1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~   80 (632)
                      ||+|+|+|++|++|+++++|+|+++|||+|+|+++|++.+||+++|+||+|+||++|+||++||+|||+||+|+.+++++
T Consensus        60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e  139 (746)
T PTZ00429         60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLE  139 (746)
T ss_pred             HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763           81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS  160 (632)
Q Consensus        81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~  160 (632)
                      ++.++|++++.|++|||||+|++|++|+|+.+|+.+++.+|.+.|.+||.|+||+|++||+.+|++|+..++. .+.+.+
T Consensus       140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~  218 (746)
T PTZ00429        140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KIESSN  218 (746)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hhHHHH
Confidence            9999999999999999999999999999999999998778999999999999999999999999999987763 478889


Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 006763          161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK  240 (632)
Q Consensus       161 ~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~  240 (632)
                      +.+++|++.+++++||+|+++|++|.+|.|.+.+++.++++.+.++|+|+|+||+++|+|+++++.++. +++.++++++
T Consensus       219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~  297 (746)
T PTZ00429        219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTV  297 (746)
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999987644 4678888888


Q ss_pred             hcccchhhhccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhh
Q 006763          241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA  320 (632)
Q Consensus       241 ~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl  320 (632)
                      ++.++|++|+++++|+||++|++|..|++++|.+|++|++.|||+++||.|||++||++|+.|+|++|+..|++||.+|+
T Consensus       298 rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa  377 (746)
T PTZ00429        298 RVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYA  377 (746)
T ss_pred             HHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHh
Confidence            99999999998999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhh--ccCC
Q 006763          321 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL--DTLD  398 (632)
Q Consensus       321 ~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l--~~i~  398 (632)
                      ++.|.+|++++|++||+||.|++..++||+++|+++++.+++++ .+++.++++|+|+||+.+  ++..|++.+  +.+.
T Consensus       378 ~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~  454 (746)
T PTZ00429        378 SGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVV  454 (746)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhcccccc
Confidence            99999999999999999999999999999999999999877765 478999999999999864  788888765  7889


Q ss_pred             hhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHH
Q 006763          399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL  478 (632)
Q Consensus       399 ~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dv  478 (632)
                      +|++|++++||+|||++.+++++++|+.++++|.+|+++||+++||+++|+|+++|++ .+++++++|+++++++.|+||
T Consensus       455 e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DV  533 (746)
T PTZ00429        455 EEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDV  533 (746)
T ss_pred             cHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhH
Confidence            9999999999999999999999999999999999999999999999999999999976 899999999999888899999


Q ss_pred             HhhHHHHHHHhcCCH--HHHHhhhccCCCCCCCCCCcCCHHHHHHHHHhcCccccccccChhhhhccccccCCCCCCCCC
Q 006763          479 RDRAYIYWRLLSTDP--EAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDY  556 (632)
Q Consensus       479 rdRA~~y~~LL~~~~--~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tls~vy~kp~~~~~~~~~~~~~~~~~~~~  556 (632)
                      ||||++|||||+.++  +.+++|+++++|++...+...|+.++++|+.+|||+||||+||+++|+++......+++||+.
T Consensus       534 RDRA~~Y~rLLs~~~~~~~a~~iv~~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~~~~~~~  613 (746)
T PTZ00429        534 RDRAFAYWRLLSKGITVAQMKKVVHGQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVELDEEDT  613 (746)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhccccccccccc
Confidence            999999999999875  668999999999987766678888999999999999999999999999988877766544444


Q ss_pred             CCCCCCCCCCCCCCcCcCCCCCCCCCCCCC-------cccCCCCCCCCCCCCCCCCCCccccccCC
Q 006763          557 PNGSEQGYSDAPTHVADEGASPQTSSSNAP-------YAATRQPAPPPAAPVSPPVPDLLGDLIGL  615 (632)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (632)
                      ..++++.....+.-+.+.++ |.++...++       +.++++|+|..+.++...-.|++||+|||
T Consensus       614 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (746)
T PTZ00429        614 EDDDAVELPSTPSMGTQDGS-PAPSAAPAGYDIFEFAGDGTGAPHPVASGSNGAQHADPLGDLFSG  678 (746)
T ss_pred             cchhhccCCCCCCCCCCCCC-CCcccccccchhhhhcccCCCCCCccccCCccccccCcHHHHhcC
Confidence            44444433333333334233 333333332       33444454443334444556788999998

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 0.0
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 0.0
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 0.0
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 3e-05
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure 
Iteration: 1

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/543 (70%), Positives = 452/543 (83%), Gaps = 3/543 (0%)
Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVS+LF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVNTFVKD +DPNP
Sbjct: 41  MTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNP 100
Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLC+PL++CLKD+DPYVRKTAA+CVAKL+DINA++VED+G
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 121 FLESLKDLISDXX-XXXXXXXXXXXXXXXXXSSRPIFEITSHTLSKLLTALNECTEWGQV 179
           FL++LKDLISD                     S  + ++ + +++KLLTALNECTEW Q+
Sbjct: 161 FLDTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQI 220
Query: 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS-TDVVRNL 238
           FILD L  Y   D REA++I ERVTPRL HAN AVVLSAVK++++ ME+++   D    L
Sbjct: 221 FILDCLGNYMPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATL 280
Query: 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298
            KK+APPLVTLLSAEPE QYV LRNINLIVQ+RP IL HE+KVFF KYNDPIYVK+EKL+
Sbjct: 281 LKKLAPPLVTLLSAEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLD 340
Query: 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358
           IMI+LAS  NI QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E++AERC+S LL+LI+
Sbjct: 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400
Query: 359 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 418
            KVNYVVQEAI+VIKDIFR+YPN YES+IATLCE+LD+ DEPEA+A+MIWI+GEYAER D
Sbjct: 401 TKVNYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSDDEPEARAAMIWIVGEYAERSD 460
Query: 419 NADXXXXXXXXXXXXXXAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478
           NAD               QVQLQLLTA VKLFLKKPTE  Q+++Q VL+ AT ++DNPDL
Sbjct: 461 NADELLESFLDGFHDESTQVQLQLLTAIVKLFLKKPTET-QELVQQVLSLATQDSDNPDL 519
Query: 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPE 538
           RDR YIYWRLLSTDP AAK+VVLAEKP+IS++++ ++P+LLDEL+  I TL+SVYHKPP 
Sbjct: 520 RDRGYIYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHKPPN 579
Query: 539 AFV 541
           AFV
Sbjct: 580 AFV 582
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 0.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-160
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-159
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 4e-63
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 4e-16
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 7e-11
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 1e-10
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-10
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 4e-09
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-10
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 6e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 5e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 7e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-05
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 6e-07
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-04
1qgr_A876 Protein (importin beta subunit); transport recepto 4e-06
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 8e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 4e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 9e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 6e-04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 6e-04
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 8e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  695 bits (1795), Expect = 0.0
 Identities = 402/543 (74%), Positives = 482/543 (88%), Gaps = 3/543 (0%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVN+FVKD +DPNP
Sbjct: 41  MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLC+PL++CLKD+DPYVRKTAA+CVAKL+DINA++VED+G
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160

Query: 121 FLESLKDLISDNNPMVVANAVAALAEI-EENSSRPIFEITSHTLSKLLTALNECTEWGQV 179
           FL+SL+DLI+D+NPMVVANAVAAL+EI E + +  + ++    ++KLLTALNECTEWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220

Query: 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL 238
           FILD LS Y   D REA++I ERVTPRL HAN AVVLSAVK++++ +EL+   +D    L
Sbjct: 221 FILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280

Query: 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298
            KK+APPLVTLLS EPE+QYVALRNINLIVQ+RP IL  EIKVFF KYNDPIYVK+EKL+
Sbjct: 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD 340

Query: 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358
           IMI+LAS  NI QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E++AERC+S LL+LI+
Sbjct: 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400

Query: 359 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 418
            KVNYVVQEAI+VI+DIFR+YPN YESIIATLCE+LD+LDEP+A+A+MIWI+GEYAERID
Sbjct: 401 TKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460

Query: 419 NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478
           NADELLESFLE F +E  QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDL
Sbjct: 461 NADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDNPDL 519

Query: 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPE 538
           RDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP 
Sbjct: 520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPN 579

Query: 539 AFV 541
           AFV
Sbjct: 580 AFV 582
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.77
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.69
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.64
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.64
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.6
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.59
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.58
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.55
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.55
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.54
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.53
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.51
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.51
1qgr_A876 Protein (importin beta subunit); transport recepto 99.46
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.46
1qgr_A876 Protein (importin beta subunit); transport recepto 99.46
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.45
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.45
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.45
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.42
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.42
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.4
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.39
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.35
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.34
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.34
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.31
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.28
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.26
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.25
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.2
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.19
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.16
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.14
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.0
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.98
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.98
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.97
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.91
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.9
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.9
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.8
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.76
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.69
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.69
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.66
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.6
2x19_B 963 Importin-13; nuclear transport, protein transport; 98.53
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.46
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.43
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.42
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.42
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.34
3nmz_A458 APC variant protein; protein-protein complex, arma 98.33
2x1g_F 971 Cadmus; transport protein, developmental protein, 98.3
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.3
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.3
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.29
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.24
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.21
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.16
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.16
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.13
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.11
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.99
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.94
2x19_B963 Importin-13; nuclear transport, protein transport; 97.93
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.92
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.92
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.91
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.87
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.83
3nmz_A458 APC variant protein; protein-protein complex, arma 97.77
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.72
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.71
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.7
2x1g_F971 Cadmus; transport protein, developmental protein, 97.68
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.65
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 97.56
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.53
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.31
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.3
3grl_A651 General vesicular transport factor P115; vesicle t 97.27
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.24
3grl_A651 General vesicular transport factor P115; vesicle t 97.17
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.15
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.31
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 96.2
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 96.17
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.17
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.02
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 95.85
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 95.62
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.54
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 95.54
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 95.48
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.31
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 94.53
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 94.43
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 93.7
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 93.6
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 92.9
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 92.73
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 92.33
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 92.32
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 92.29
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 91.35
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 88.36
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 88.24
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 85.47
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 85.29
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 82.49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
Probab=100.00  E-value=1.2e-91  Score=798.10  Aligned_cols=547  Identities=73%  Similarity=1.165  Sum_probs=515.4

Q ss_pred             CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763            1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE   80 (632)
Q Consensus         1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~   80 (632)
                      |++|+|++++|++++++++++|+++||+||+|++.+++.+||.+++++|+|+||++|+||.+|++|||+||+++.+++.+
T Consensus        41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~  120 (591)
T 2vgl_B           41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE  120 (591)
T ss_dssp             HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred             HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC-chhcc
Q 006763           81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT  159 (632)
Q Consensus        81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~-~~~l~  159 (632)
                      ++.+.|++++.|++|||||+|+.|+.++++.+|+.+++.+|++.+..+|.|+|++|+.+|+.+|.+|+..++.. .+.+.
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~  200 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN  200 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence            99999999999999999999999999999999999987689999999999999999999999999999887755 46777


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc-CChHHHHHH
Q 006763          160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL  238 (632)
Q Consensus       160 ~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i-~~~~~~~~~  238 (632)
                      +..+.+|++.+.+++||+|+++|+++++|.|.++++...+++.+.++++|.|++|+++|+++++++.+.+ .+++.++.+
T Consensus       201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~  280 (591)
T 2vgl_B          201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML  280 (591)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred             HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence            8889999999999999999999999999999999899999999999999999999999999999876544 355667777


Q ss_pred             HHhcccchhhhccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 006763          239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE  318 (632)
Q Consensus       239 ~~~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~  318 (632)
                      ..++.++|++++++++|+||++|++|..+++.+|+.+.+|++.|+|+.+||.+||++|+++|+.|++++|++.|++||.+
T Consensus       281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~  360 (591)
T 2vgl_B          281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE  360 (591)
T ss_dssp             HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence            77888888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCC
Q 006763          319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD  398 (632)
Q Consensus       319 yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~  398 (632)
                      |+++.|.+|+++++++||.||.+|++..+||+++|+++++..++++.++++.+++++++++|+.+++++..|++.++++.
T Consensus       361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~  440 (591)
T 2vgl_B          361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD  440 (591)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHH
Q 006763          399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL  478 (632)
Q Consensus       399 ~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dv  478 (632)
                      +|+++++++|++||||+.+++++++++.++++|.++++.||.++|||++|++.+.|++ .+++++++|+.++.++.|+||
T Consensus       441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~ev  519 (591)
T 2vgl_B          441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDL  519 (591)
T ss_dssp             SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHH
T ss_pred             CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHH
Confidence            9999999999999999999999999999999999999999999999999999999975 678999999998777899999


Q ss_pred             HhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCcCCHHHHHHHHHhcCccccccccChhhhhccccccC
Q 006763          479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTA  548 (632)
Q Consensus       479 rdRA~~y~~LL~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tls~vy~kp~~~~~~~~~~~~  548 (632)
                      ||||++||+||+.+++.++++++++||+++..++..+++++++++.+|||+|++|+||++.|+++.+...
T Consensus       520 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~~~~  589 (591)
T 2vgl_B          520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIH  589 (591)
T ss_dssp             HHHHHHHHTTTTTCTTHHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC-------
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCccccc
Confidence            9999999999999888999999999999998888899999999999999999999999999998776543
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 632
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-172
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-118
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-13
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.003
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 1e-06
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 3e-05
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 2e-06
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 5e-06
d1te4a_111 a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium 8e-06
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 3e-04
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 0.003
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.74
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.6
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.44
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.37
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.34
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.23
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.2
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.2
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.18
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.15
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.14
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.14
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.08
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.04
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.03
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.99
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.92
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.88
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.8
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.7
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.69
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.58
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.45
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.41
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.24
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.03
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.96
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.84
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.39
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.28
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 95.9
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.75
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.92
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 90.95
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 81.74
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure