Citrus Sinensis ID: 006764

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRPLRSGFAGSNEGGWASTVRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGRGKPSSTWGNVSKKFGFKLKSQMCSAQEGSVSNQNNHSGKLEKVKDRHGKHKNNLSPDG
ccccccccccHHHHHcccEEEEEcccccEEEEEEccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccEEcccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHEcccccccHEEcccEEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHEcccccccccEEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccEEcHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccccc
macvklgskTDAFQRqgqawfctsglpsdiVVEVGEMsfhlhkfpllsrsGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMteeygdgnlitQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAvkastdpnlfgwpvvehggpmqspggsvlwngistgarpknstsdwwyedvstlsLPLYKRLIDVMESRGIRQEIIAGSLTFYAKkylpglnrrqgdsstrlapvalgappseEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATledllmpnfsysmETLYNVECVQRILDHFLAmdqitggaspcsvddgqllgspsltpITMVAKLIDGYlaevapdvnlklpkfqklaatvpdyarplddGLYRAIDIYlkshpwlaesDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCflvsdnldgsrplrsgfagsneggwastvrENQVLKVGMDNMRMRVSELEKECSNMKQEIEklgrgkpsstwgnvskKFGFKLKSQMcsaqegsvsnqnnhsgklekvkdrhgkhknnlspdg
MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHkfpllsrsGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARpknstsdwwYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPglnrrqgdsstRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRPLRSgfagsneggwastvrenqvlkvgMDNMRMRVSELEKECSNMKQEIeklgrgkpsstwgnVSKKFGFKLKSQMCSAQegsvsnqnnhsgklekvkdrhgkhknnlspdg
MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRPLRSGFAGSNEGGWASTVRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGRGKPSSTWGNVSKKFGFKLKSQMCSAQEGSVSNQNNHSGKLEKVKDRHGKHKNNLSPDG
************FQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGG******GSVLWNGISTGAR**NSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGL**************************LLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLD*******************************************************************************************************************
******GSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAM*****************NLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFG***********************************WYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRR*******************EEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLA*****************************VAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPW***SDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQL************************************************************************************************************************************
MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRPLRSGFAGSNEGGWASTVRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGRGKPSSTWGNVSKKFGFKLKS**************************************
****KLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEH***********************NSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGL*********************EEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQ*******************SLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLV***********************S*VRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGR**********************************************************
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MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRPLRSGFAGSNEGGWASTVRExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKPSSTWGNVSKKFGFKLKSQMCSAQEGSVSNQNNHSGKLEKVKDRHGKHKNNLSPDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query632 2.2.26 [Sep-21-2011]
Q9S9Q9665 BTB/POZ domain-containing yes no 0.988 0.939 0.757 0.0
Q9LYW0592 BTB/POZ domain-containing no no 0.909 0.971 0.563 0.0
Q9FNB3591 Putative BTB/POZ domain-c no no 0.903 0.966 0.526 1e-166
Q9FYC8651 BTB/POZ domain-containing no no 0.882 0.857 0.490 1e-160
Q94A73668 BTB/POZ domain-containing no no 0.917 0.868 0.456 1e-156
Q8LPQ3569 BTB/POZ domain-containing no no 0.875 0.971 0.426 1e-130
Q5KS50762 Coleoptile phototropism p no no 0.914 0.758 0.366 1e-118
Q9FKB6614 BTB/POZ domain-containing no no 0.857 0.882 0.418 1e-114
Q9C9Z7617 BTB/POZ domain-containing no no 0.890 0.912 0.380 1e-101
Q9SA69634 BTB/POZ domain-containing no no 0.862 0.859 0.376 1e-100
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function desciption
 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/656 (75%), Positives = 560/656 (85%), Gaps = 31/656 (4%)

Query: 1   MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEA 60
           MAC+KLGSK+DAFQRQGQAWFCT+GLPSDIVVEVGEMSFHLHKFPLLSRSG MER IAEA
Sbjct: 1   MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEA 60

Query: 61  SEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDG 120
           S++ ++KC+I + D+PG  KTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEE+G+G
Sbjct: 61  SKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEG 120

Query: 121 NLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFG 180
           NLI+QTETF NQVVL++WKDS+KAL +CD++L YA+ELNITK+CIESLA++ASTDPNLFG
Sbjct: 121 NLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNLFG 180

Query: 181 WPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGI 240
           WPVVEHGGPMQSPGGSVLWNGISTGARPK+++SDWWYED S LS PL+KRLI VMESRGI
Sbjct: 181 WPVVEHGGPMQSPGGSVLWNGISTGARPKHTSSDWWYEDASMLSFPLFKRLITVMESRGI 240

Query: 241 RQEIIAGSLTFYAKKYLPGLNRRQG--DSSTRLA-PVALGAPPSEEEQKLLLEEIDKLLP 297
           R++IIAGSLT+Y +K+LPGL RR+G  +SS R + P+  G   SEEEQK LLEEI +LL 
Sbjct: 241 REDIIAGSLTYYTRKHLPGLKRRRGGPESSGRFSTPLGSGNVLSEEEQKNLLEEIQELLR 300

Query: 298 VQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLY 357
           +QKGLV  KF   +LR A ILKASP CI+ LEKRIGMQLDQA LEDL+MP+FS++METLY
Sbjct: 301 MQKGLVPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSHTMETLY 360

Query: 358 NVECVQRILDHFLAMDQITGG--ASPC-SVDDGQLLGSP-SLTPITMVAKLIDGYLAEVA 413
           +V+ VQRILDHFL  DQI  G   SPC SVDDG L+GSP S+TP+T VAKLIDGYLAEVA
Sbjct: 361 DVDSVQRILDHFLGTDQIMPGGVGSPCSSVDDGNLIGSPQSITPMTAVAKLIDGYLAEVA 420

Query: 414 PDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLS 473
           PDVNLKLPKFQ LAA++P+YAR LDDGLYRAIDIYLK HPWLAE++RE LCRL+DCQKLS
Sbjct: 421 PDVNLKLPKFQALAASIPEYARLLDDGLYRAIDIYLKHHPWLAETERENLCRLLDCQKLS 480

Query: 474 LEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLD-GSRPLRSG------- 525
           LEACTHAAQNERLPLRIIVQVLFFEQLQLRTS+AGCFLVSDNLD GSR LRSG       
Sbjct: 481 LEACTHAAQNERLPLRIIVQVLFFEQLQLRTSVAGCFLVSDNLDGGSRQLRSGGYVGGPN 540

Query: 526 FAGSNEGGWASTVRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGR----------G 575
             G   GGWA+ VRENQVLKVGMD+MRMRV ELEKECSNM+QEIEKLG+          G
Sbjct: 541 EGGGGGGGWATAVRENQVLKVGMDSMRMRVCELEKECSNMRQEIEKLGKTTKGGGSASNG 600

Query: 576 KPSSTWGNVSKK--FGFKLKS-QMCSAQEGSVSNQNNHSGKLEKVKD---RHGKHK 625
             S TW NVSKK  FGFKLKS QMCSAQEGSVS  NN + K+EK+KD   R GKHK
Sbjct: 601 VGSKTWENVSKKLGFGFKLKSHQMCSAQEGSVSKSNNENVKIEKLKDVKERRGKHK 656
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function description
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function description
>sp|Q8LPQ3|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
147766196668 hypothetical protein VITISV_002335 [Viti 0.995 0.941 0.883 0.0
225444002632 PREDICTED: BTB/POZ domain-containing pro 0.995 0.995 0.881 0.0
255571326631 Root phototropism protein, putative [Ric 0.993 0.995 0.886 0.0
302398639634 BZIP domain class transcription factor [ 0.987 0.984 0.869 0.0
449433732636 PREDICTED: BTB/POZ domain-containing pro 0.988 0.982 0.855 0.0
356556501643 PREDICTED: BTB/POZ domain-containing pro 0.993 0.976 0.847 0.0
357450437647 BTB/POZ domain-containing protein [Medic 0.993 0.970 0.842 0.0
365222944629 Hop-interacting protein THI063 [Solanum 0.985 0.990 0.838 0.0
356530531643 PREDICTED: BTB/POZ domain-containing pro 0.993 0.976 0.843 0.0
397746435629 bZIP6 [Tamarix hispida] 0.992 0.996 0.806 0.0
>gi|147766196|emb|CAN72130.1| hypothetical protein VITISV_002335 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1165 bits (3015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/633 (88%), Positives = 594/633 (93%), Gaps = 4/633 (0%)

Query: 1   MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEA 60
           MAC+KLGSK+DAFQRQGQAWFCT+GLPSDIVVEVGEMSFHLHKFPLLSRSG MERLIA+A
Sbjct: 1   MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERLIAKA 60

Query: 61  SEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDG 120
           SE+ EE C INL DIPG AKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEY +G
Sbjct: 61  SEEGEEGCSINLPDIPGGAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYAEG 120

Query: 121 NLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFG 180
           NLI QTE FLNQ+VL+NWKDSLKALQ+CDD+LP+AEEL+I KRCIESLA KA TDPNLFG
Sbjct: 121 NLIMQTEVFLNQIVLKNWKDSLKALQSCDDVLPHAEELHIPKRCIESLAAKACTDPNLFG 180

Query: 181 WPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGI 240
           WPV+EHGGPMQSPGGSVLWNGISTGARPKNS+SDWWYEDVSTLSL LYKRL+ VMESRGI
Sbjct: 181 WPVMEHGGPMQSPGGSVLWNGISTGARPKNSSSDWWYEDVSTLSLSLYKRLVSVMESRGI 240

Query: 241 RQEIIAGSLTFYAKKYLPGLNRRQ--GDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPV 298
           +QEIIAGSLTFYAKKYLPGLNRRQ   +SS RL PVALGAPPSEE+QKLLLEEID+LLP+
Sbjct: 241 KQEIIAGSLTFYAKKYLPGLNRRQVASESSMRLEPVALGAPPSEEDQKLLLEEIDRLLPM 300

Query: 299 QKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYN 358
           QKG +S K LFGLLRTAMIL+ASPSCIS LE+RIGMQLDQATLEDLLMPNFSYSMETLYN
Sbjct: 301 QKGAISTKVLFGLLRTAMILRASPSCISNLERRIGMQLDQATLEDLLMPNFSYSMETLYN 360

Query: 359 VECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNL 418
           VECVQRIL+HFLAMDQ TGGASPCS+DDGQL+GSPSLTPITMVAKLIDGYLAEVAPDVNL
Sbjct: 361 VECVQRILEHFLAMDQATGGASPCSIDDGQLMGSPSLTPITMVAKLIDGYLAEVAPDVNL 420

Query: 419 KLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLSLEACT 478
           KLPKFQ LAA++PDYARPLDDGLYRA DIYLKSHPWL+ESDREQLCRLMDCQKLSLEACT
Sbjct: 421 KLPKFQSLAASIPDYARPLDDGLYRATDIYLKSHPWLSESDREQLCRLMDCQKLSLEACT 480

Query: 479 HAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRPLRSGFAGSNEGGWASTV 538
           HAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNL+GSR LRSGFAGSNEGGWA+ V
Sbjct: 481 HAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLEGSRQLRSGFAGSNEGGWATAV 540

Query: 539 RENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGRGKPSSTWGNVSKKFGFKLKSQMCS 598
           RENQVLKVGMDNMR+RVSELEKECSNM+QEIEKLGR K SS WGNVSKKFGFKLKSQMCS
Sbjct: 541 RENQVLKVGMDNMRLRVSELEKECSNMRQEIEKLGRVKGSSAWGNVSKKFGFKLKSQMCS 600

Query: 599 AQEGSVSNQNNHSGKLEKVKDRHGKHKNNLSPD 631
           AQEGS+S QNN SGKLEK KD  GKHK N S +
Sbjct: 601 AQEGSISQQNNGSGKLEKAKD--GKHKKNSSKE 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444002|ref|XP_002281182.1| PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform 1 [Vitis vinifera] gi|297740803|emb|CBI30985.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255571326|ref|XP_002526612.1| Root phototropism protein, putative [Ricinus communis] gi|223534052|gb|EEF35771.1| Root phototropism protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302398639|gb|ADL36614.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449433732|ref|XP_004134651.1| PREDICTED: BTB/POZ domain-containing protein At1g30440-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356556501|ref|XP_003546563.1| PREDICTED: BTB/POZ domain-containing protein At1g30440-like [Glycine max] Back     alignment and taxonomy information
>gi|357450437|ref|XP_003595495.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|124360049|gb|ABN08065.1| BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 [Medicago truncatula] gi|355484543|gb|AES65746.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|365222944|gb|AEW69824.1| Hop-interacting protein THI063 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|356530531|ref|XP_003533834.1| PREDICTED: BTB/POZ domain-containing protein At1g30440-like [Glycine max] Back     alignment and taxonomy information
>gi|397746435|gb|AFO63285.1| bZIP6 [Tamarix hispida] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.931 0.885 0.768 1.3e-279
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.909 0.971 0.566 8.6e-175
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.901 0.964 0.531 6.9e-150
TAIR|locus:2082132651 AT3G44820 [Arabidopsis thalian 0.974 0.946 0.467 3.9e-147
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.685 0.648 0.516 4.3e-147
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.566 0.479 0.392 6.5e-123
TAIR|locus:2077992569 AT3G50840 [Arabidopsis thalian 0.533 0.592 0.441 8.2e-123
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.501 0.516 0.462 4.5e-107
TAIR|locus:2007564634 AT1G03010 [Arabidopsis thalian 0.931 0.929 0.371 1.4e-94
TAIR|locus:2200286631 AT1G67900 [Arabidopsis thalian 0.767 0.768 0.401 5.1e-90
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2367 (838.3 bits), Expect = 1.3e-279, Sum P(2) = 1.3e-279
 Identities = 466/606 (76%), Positives = 527/606 (86%)

Query:     1 MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEA 60
             MAC+KLGSK+DAFQRQGQAWFCT+GLPSDIVVEVGEMSFHLHKFPLLSRSG MER IAEA
Sbjct:     1 MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEA 60

Query:    61 SEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDG 120
             S++ ++KC+I + D+PG  KTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEE+G+G
Sbjct:    61 SKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEG 120

Query:   121 NLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFG 180
             NLI+QTETF NQVVL++WKDS+KAL +CD++L YA+ELNITK+CIESLA++ASTDPNLFG
Sbjct:   121 NLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNLFG 180

Query:   181 WPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGI 240
             WPVVEHGGPMQSPGGSVLWNGISTGARPK+++SDWWYED S LS PL+KRLI VMESRGI
Sbjct:   181 WPVVEHGGPMQSPGGSVLWNGISTGARPKHTSSDWWYEDASMLSFPLFKRLITVMESRGI 240

Query:   241 RQEIIAGSLTFYAKKYLPGLNRRQG--DSSTRLA-PVALGAPPSEEEQKLLLEEIDKLLP 297
             R++IIAGSLT+Y +K+LPGL RR+G  +SS R + P+  G   SEEEQK LLEEI +LL 
Sbjct:   241 REDIIAGSLTYYTRKHLPGLKRRRGGPESSGRFSTPLGSGNVLSEEEQKNLLEEIQELLR 300

Query:   298 VQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLY 357
             +QKGLV  KF   +LR A ILKASP CI+ LEKRIGMQLDQA LEDL+MP+FS++METLY
Sbjct:   301 MQKGLVPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSHTMETLY 360

Query:   358 NVECVQRILDHFLAMDQIT-GGA-SPCS-VDDGQLLGSP-SLTPITMVAKLIDGYLAEVA 413
             +V+ VQRILDHFL  DQI  GG  SPCS VDDG L+GSP S+TP+T VAKLIDGYLAEVA
Sbjct:   361 DVDSVQRILDHFLGTDQIMPGGVGSPCSSVDDGNLIGSPQSITPMTAVAKLIDGYLAEVA 420

Query:   414 PDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKLS 473
             PDVNLKLPKFQ LAA++P+YAR LDDGLYRAIDIYLK HPWLAE++RE LCRL+DCQKLS
Sbjct:   421 PDVNLKLPKFQALAASIPEYARLLDDGLYRAIDIYLKHHPWLAETERENLCRLLDCQKLS 480

Query:   474 LEACTHAAQNERLPLRIIVQVLFFEQLQLRTSIAGCFLVSDNLDG-SRPLRSG--FAGSN 530
             LEACTHAAQNERLPLRIIVQVLFFEQLQLRTS+AGCFLVSDNLDG SR LRSG    G N
Sbjct:   481 LEACTHAAQNERLPLRIIVQVLFFEQLQLRTSVAGCFLVSDNLDGGSRQLRSGGYVGGPN 540

Query:   531 EGG-----WASTVRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGRGKPSSTWGNVS 585
             EGG     WA+ VRENQVLKVGMD+MRMRV ELEKECSNM+QEIEKLG  K +   G+ S
Sbjct:   541 EGGGGGGGWATAVRENQVLKVGMDSMRMRVCELEKECSNMRQEIEKLG--KTTKGGGSAS 598

Query:   586 KKFGFK 591
                G K
Sbjct:   599 NGVGSK 604
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077992 AT3G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S9Q9Y1044_ARATHNo assigned EC number0.75760.98890.9398yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
pfam03000249 pfam03000, NPH3, NPH3 family 1e-139
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 3e-08
pfam00651101 pfam00651, BTB, BTB/POZ domain 1e-07
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  405 bits (1043), Expect = e-139
 Identities = 151/265 (56%), Positives = 186/265 (70%), Gaps = 16/265 (6%)

Query: 213 SDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLA 272
            DWW+ED+S LS+ L+KR+I  M+SRG++ E+I  +L  YAKK+LPGL+R          
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRS--------- 51

Query: 273 PVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRI 332
                   SEEEQ+ LLE I  LLP +KG VS  FLF LLR A+IL AS SC  +LE+RI
Sbjct: 52  --GSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRI 109

Query: 333 GMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGS 392
           G+QLDQATL+DLL+P+     ETLY+V+ VQRIL+ FL+ D  T      S DD     S
Sbjct: 110 GLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFLSRDAAT-----QSSDDEDSEAS 164

Query: 393 PSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSH 452
           PS + +  VAKL+DGYLAE+APD NLKL KF  LA  VPD ARP  DGLYRAIDIYLK+H
Sbjct: 165 PSSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAH 224

Query: 453 PWLAESDREQLCRLMDCQKLSLEAC 477
           P L+ES++++LCRLMDCQKLS EAC
Sbjct: 225 PNLSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.94
PHA02713557 hypothetical protein; Provisional 99.93
PHA02790480 Kelch-like protein; Provisional 99.9
PHA03098534 kelch-like protein; Provisional 99.88
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.67
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.56
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.29
KOG4350620 consensus Uncharacterized conserved protein, conta 99.18
KOG4591280 consensus Uncharacterized conserved protein, conta 98.88
KOG4682488 consensus Uncharacterized conserved protein, conta 98.47
KOG07831267 consensus Uncharacterized conserved protein, conta 98.2
KOG07831267 consensus Uncharacterized conserved protein, conta 98.16
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.74
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.97
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.6
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.97
KOG3473112 consensus RNA polymerase II transcription elongati 94.62
KOG2838401 consensus Uncharacterized conserved protein, conta 94.29
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.1
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.33
KOG2838401 consensus Uncharacterized conserved protein, conta 89.66
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 82.78
KOG0511516 consensus Ankyrin repeat protein [General function 80.04
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=6.3e-88  Score=688.31  Aligned_cols=258  Identities=55%  Similarity=0.907  Sum_probs=228.5

Q ss_pred             CCccccccccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCCCcccCCCCCCCcCCcCCCCCCCHHHHHHHHHHH
Q 006764          213 SDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEI  292 (632)
Q Consensus       213 ~dWW~EDl~~Lsldlf~rvI~am~~~g~~~e~I~~aL~~Yakk~lp~~~r~~~~~~~~~~~~~~~~~~~~~~qr~LLEtI  292 (632)
                      +||||||++.|++++|+|||.+|+++|+++++|+++|++||+||+|++++.....    ............+||.+||+|
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~----~~~~~~~~~~~~~~r~llEti   76 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGS----SSSAESSTSSENEQRELLETI   76 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccc----cccccccchhHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999986542111    112223456778999999999


Q ss_pred             HHhcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccccccccccCCCCCCcccchhHHHHHHHHHHHhc
Q 006764          293 DKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAM  372 (632)
Q Consensus       293 v~lLP~~k~~vs~~fLf~LLR~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLips~~~~~~tlyDvd~V~ril~~Fl~~  372 (632)
                      |+|||.+++++||+|||+|||+|+++++|+.||.+||+|||.|||||||||||||+.+...+|+||||+|+|||++||.+
T Consensus        77 V~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~  156 (258)
T PF03000_consen   77 VSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQ  156 (258)
T ss_pred             HHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999333445999999999999999998


Q ss_pred             ccccCCCCCCCCCCCccCCCCCchhHHHHHHhHhhhhhhhcCCCCCChhhHHHHHHhcCCCCCCCchhHHHHHHHHHHhC
Q 006764          373 DQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSH  452 (632)
Q Consensus       373 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEvA~D~nL~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLkaH  452 (632)
                      ++..+....   ++....++++.+++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||||||+|
T Consensus       157 ~~~~~~~~~---~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~H  233 (258)
T PF03000_consen  157 EEEAGEEEE---SESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAH  233 (258)
T ss_pred             ccccccccc---cccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHc
Confidence            654321111   11112234678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHhHHhhhccccccCCCHHHh
Q 006764          453 PWLAESDREQLCRLMDCQKLSLEAC  477 (632)
Q Consensus       453 p~lse~Er~~lC~~ldcqKLS~EAc  477 (632)
                      |+||++||++||++|||||||+|||
T Consensus       234 p~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  234 PGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             ccCCHHHHHHHHhhCCcccCCcccC
Confidence            9999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-07
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 1e-07
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-07
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-07
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 3e-07
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 6e-07
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 7e-07
3b84_A119 Zinc finger and BTB domain-containing protein 48; 2e-06
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 3e-06
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 7e-06
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 1e-05
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 2e-05
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 1e-04
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 1e-04
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-04
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 3e-04
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 4e-04
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 6e-04
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 71.0 bits (173), Expect = 7e-13
 Identities = 54/337 (16%), Positives = 109/337 (32%), Gaps = 71/337 (21%)

Query: 282 EEEQKLLL--EEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQA 339
           ++  K +L  EEID ++  +  +     LF  L +                    ++ Q 
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-----------------QEEMVQK 81

Query: 340 TLEDLLMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPIT 399
            +E++L  N+ + M      E  Q  +   + ++Q          +D Q+    +++ + 
Sbjct: 82  FVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFAKYNVSRLQ 135

Query: 400 MVAKLIDGYLAEVAPDVNLKL---PKFQK--LAATVPDYARPLDDGLYRAID--IYLKSH 452
              KL    L E+ P  N+ +       K  +A  V          +   +D  I+    
Sbjct: 136 PYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDV---CL--SYKVQCKMDFKIF---- 185

Query: 453 PWL-------AESDREQLCRLMDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTS 505
            WL        E+  E L +L    ++     + +  +  + LRI        +L     
Sbjct: 186 -WLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 506 IAGCFLVSDNLDGSRPLRSGFAGSNEGGWAS----TVRENQVLKVGMDNMRMRVSELEKE 561
              C LV  N+  ++   + F  S           T R  QV           +S     
Sbjct: 243 YENCLLVLLNVQNAKAWNA-FNLS------CKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 562 CSNMKQEIEKLGRGKPSSTWGNVSKKFGFKLKSQMCS 598
            +    E++ L        + +   +    L  ++ +
Sbjct: 296 MTLTPDEVKSL-----LLKYLDCRPQ---DLPREVLT 324
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.93
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.93
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.84
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.84
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.83
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.83
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.82
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.82
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.82
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.82
2vpk_A116 Myoneurin; transcription regulation, transcription 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.81
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.81
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.8
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.8
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.8
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.8
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.79
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.76
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.72
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.38
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.16
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.01
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.85
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.25
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.25
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.22
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.58
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.42
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.38
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.24
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 94.01
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 92.26
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 92.14
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 91.41
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 90.51
3vmx_A48 Voltage-gated hydrogen channel 1; coiled-coil, ION 82.64
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.93  E-value=2.1e-27  Score=240.09  Aligned_cols=230  Identities=14%  Similarity=0.100  Sum_probs=165.9

Q ss_pred             hHHHhhcCCCeeEEEEECCeEEEeccccccccCHHHHHHhhccccc-ccccceEEeCCCCCCHHHHHHHHHHhcCCCccc
Q 006764           18 QAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEK-AEEKCIINLLDIPGRAKTFELVAKFCYGVKLEL   96 (632)
Q Consensus        18 ~~w~r~~g~~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e-~~~~~~v~L~d~pgga~~felv~~FcYg~~i~i   96 (632)
                      -..++.++.+|||+|.|||+.|++||.+|+++|+||++||+.+..+ ++....|.|+++  .+++|+.+++|+|||++.+
T Consensus        22 l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v--~~~~f~~ll~~~Yt~~~~i   99 (256)
T 3hve_A           22 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI--SVMVMREILDYIFSGQIRL   99 (256)
T ss_dssp             HHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSC--CHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCC--CHHHHHHHHhhccCCCCcc
Confidence            4467899999999999999999999999999999999999876541 134578999999  4799999999999999999


Q ss_pred             CcchHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHHHhhhhhHHHHHHHhc---hhhHHHHHHHHHHc
Q 006764           97 TASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELN---ITKRCIESLAVKAS  173 (632)
Q Consensus        97 t~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~L~sC~~L~~~Ae~~~---iv~rcidsLa~kac  173 (632)
                      +.+||..++.||.+|||++      |++.|+.||.+.+.+         .||..++.+|+.++   +.+.|.+-|+....
T Consensus       100 ~~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~  164 (256)
T 3hve_A          100 NEDTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAA---------ENCIGIRDFALHYCLHHVHYLATEYLETHFR  164 (256)
T ss_dssp             C-CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCS---------STTHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCH---------hhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999998      999999999998865         37777888888776   33444444433310


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006764          174 TDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYA  253 (632)
Q Consensus       174 ~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~t~~~~~~~~~dWW~EDl~~Lsldlf~rvI~am~~~g~~~e~I~~aL~~Ya  253 (632)
                          .+                                   +-.+++..|+.+.+..+|++......+++.|+.+++.|+
T Consensus       165 ----~v-----------------------------------~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~  205 (256)
T 3hve_A          165 ----DV-----------------------------------SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWI  205 (256)
T ss_dssp             ----HH-----------------------------------TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTC
T ss_pred             ----HH-----------------------------------hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHH
Confidence                00                                   014688999999999999998888788999999999998


Q ss_pred             HhhcCCCcccCCCCCCCcCCcCCCCCCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 006764          254 KKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKAS-PSCISKLEK  330 (632)
Q Consensus       254 kk~lp~~~r~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lLP~~k~~vs~~fLf~LLR~A~~l~as-~~cr~~LE~  330 (632)
                      ++..+.  |                   ...-..|++.|+.      +.+|..||...+.....+..+ +.|+.-|++
T Consensus       206 ~~~~~~--R-------------------~~~~~~ll~~VRf------~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          206 AHDTEI--R-------------------KVHMKDVMSALWV------SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             CC--CC--S-------------------TTTHHHHHHHHHH------HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             HcCHHH--H-------------------HHHHHHHHHhCCC------CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence            654321  1                   1344679999985      357778999999988888888 689988875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 632
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-09
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 6e-08
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 24  SGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFE 83
             + +D+V+ V    F  HK  L++ SG      +  +++ +    +  LD     + F 
Sbjct: 22  RDILTDVVIVVSREQFRAHKTVLMACSGLFY---SIFTDQLKRNLSVINLDPEINPEGFN 78

Query: 84  LVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFL 130
           ++  F Y  +L L   N++ +   A +L+M        ++     F+
Sbjct: 79  ILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCRKFI 119
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.84
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.84
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.37
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.21
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.3
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.07
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.84
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 92.47
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 89.3
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.1e-22  Score=177.44  Aligned_cols=99  Identities=28%  Similarity=0.315  Sum_probs=92.6

Q ss_pred             HHhhcCCCeeEEEEECCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCCcccCcc
Q 006764           20 WFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTAS   99 (632)
Q Consensus        20 w~r~~g~~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i~it~~   99 (632)
                      -+|.+|.+|||+|.|+|++|++||.+|+++|+||++||.++.      .++.++++  .+++|+.+++|+|||++.++.+
T Consensus        21 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~------~~i~~~~v--~~~~f~~ll~~~Ytg~i~l~~~   92 (121)
T d1buoa_          21 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS------QHYTLDFL--SPKTFQQILEYAYTATLQAKAE   92 (121)
T ss_dssp             HHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC------SEEEECSS--CHHHHHHHHHHHHHSCCCCCGG
T ss_pred             HHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcc------ceeecCCC--CHHHHHHHHHheEccccCCcHH
Confidence            468999999999999999999999999999999999997533      47899998  5799999999999999999999


Q ss_pred             hHhHHHHhhcccccCcccCcccHHHHHHHHHHH
Q 006764          100 NVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQ  132 (632)
Q Consensus       100 NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~  132 (632)
                      ||..++.||++|+|++      |.+.|++||+.
T Consensus        93 ~v~~ll~~A~~l~~~~------L~~~C~~~L~~  119 (121)
T d1buoa_          93 DLDDLLYAAEILEIEY------LEEQCLKMLET  119 (121)
T ss_dssp             GHHHHHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence            9999999999999998      99999999976
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure