Citrus Sinensis ID: 006765

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MAPAGKVSGFHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIFHHFMTSETIITSFSPASADVETSSSSGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLSIDACTHASHNERLPLRVILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAGEIVQRDGWVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEMKRVTKSHSSLSSPRLVAKKIGCRLLPRSSDAQADKVEGTASTPRASVEQPQSSRHSRHRKSFSLF
cccccccccccccccEEEEccccccEEEEEEccEEEEEEccccccccHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccHHccccccEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEEcHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccEEccccccccccccccccccccccccccccccccccccEEEcc
mapagkvsgfhregndwycsaglpsdiTVIVEGINfhlhkfplvsKCAKIARIYEESQSTHIKTFTteledfpggpgtFLIAAKFCyghrveftprniVTVYAAADylemtdeddednlvsqsESFFHKNVLRAWKDCILALQssesvlprADRLQILSKCLNALSmmactdpslfgwpmmmygslqspggsilwngintgarirssesdwwfeDLSYLSVGLFERLIKTMEargmrpenLAGAIMYYARKYlpglgrwqggqssntrrvtsysltpaaVDQKVLLETIEnllpekkgksFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDcllipnysdsdtlyntdcVERIFHhfmtsetiitsfspasadvetssssgslrKVSKLIDSYIAEVasdvnlkpgkiRSLAvalpdssrpfhdGLYRALDIYfqahpwlserdkeELCNIIDYqklsidacthashnerlpLRVILQVLFFEQLQLRTALASCLNAldtesapagpltgpsdmageivqrdgWVTVArenhglkvdmdKMRSRVGELEEEFGKIKQEMKRVTKshsslssprlvakkigcrllprssdaqadkvegtastprasveqpqssrhsrhrksfslf
mapagkvsgfhregndWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTRRVTSysltpaavdqKVLLETIENllpekkgksFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIFHHFMTSETIITSFSPASADVetssssgslrkVSKLIDSYIAEvasdvnlkpgkIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLSIDACTHASHNERLPLRVILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAGEIVQRDGWVTVArenhglkvdmdkmrsrVGELEEefgkikqemkrvtkshsslssprlvAKKIGCrllprssdaqadkvegtastprasveqpqssrhsrhrksfslf
MAPAGKVSGFHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIFHHFMTSETIITSFSPASADVETssssgsLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLSIDACTHASHNERLPLRVILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAGEIVQRDGWVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEMKRVTKSHSSLSSPRLVAKKIGCRLLPRSSDAQADKVEGTASTPRASVEQPQssrhsrhrKSFSLF
**********HREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMT************ESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGG*******VTSYSLTPAAVDQKVLLETI***********FCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIFHHFMTSETIITSF********************KLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLSIDACTHASHNERLPLRVILQVLFFEQLQLRTALASCLNALD*****************EIVQRDGWVTVARENH********************************************************************************************
******V*GFHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIA******************EDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTD***************************************WFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGL**********************AVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIFHHFMT*************************KVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHP****RDKEELCNIIDYQKLSIDACTHASHNERLPLRVILQVLFF*********************************************************************************************************************************************F
MAPAGKVSGFHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIFHHFMTSETIITSFS***************RKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLSIDACTHASHNERLPLRVILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAGEIVQRDGWVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQ***************RLVAKKIGCRLLPRSS************************************
************EGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGW****************************SESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGL**********************AVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIFHHFMTSE******************SGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLSIDACTHASHNERLPLRVILQVLFFEQLQLRTALASC*****************************WVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEMKRVTKS******PRLVAKK**********************************************
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MAPAGKVSGFHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIFHHFMTSETIITSFSPASADVETSSSSGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLSIDACTHASHNERLPLRVILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAGEIVQRDGWVTVARExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHSSLSSPRLVAKKIGCRLLPRSSDAQADKVEGTASTPRASVEQPQSSRHSRHRKSFSLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query632 2.2.26 [Sep-21-2011]
Q9FYC8651 BTB/POZ domain-containing yes no 0.993 0.964 0.668 0.0
Q9S9Q9665 BTB/POZ domain-containing no no 0.905 0.860 0.471 1e-150
Q9LYW0592 BTB/POZ domain-containing no no 0.859 0.917 0.416 1e-126
Q9FNB3591 Putative BTB/POZ domain-c no no 0.835 0.893 0.413 1e-119
Q94A73668 BTB/POZ domain-containing no no 0.911 0.862 0.380 1e-117
Q8LPQ3569 BTB/POZ domain-containing no no 0.844 0.938 0.379 1e-103
Q9FKB6614 BTB/POZ domain-containing no no 0.827 0.851 0.372 1e-101
Q9FMF5746 Root phototropism protein no no 0.897 0.760 0.335 1e-100
Q5KS50762 Coleoptile phototropism p no no 0.911 0.755 0.333 5e-94
Q9C9Z7617 BTB/POZ domain-containing no no 0.813 0.833 0.342 3e-89
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function desciption
 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/654 (66%), Positives = 528/654 (80%), Gaps = 26/654 (3%)

Query: 1   MAPAGKVSGFHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQST 60
           M+P  KVS FHREGNDW+C  GL SDITV+V+ + FHLHKFPLVSKC K+AR+YE+S+ST
Sbjct: 1   MSPVAKVSEFHREGNDWFCKTGLSSDITVVVDDVKFHLHKFPLVSKCGKLARMYEDSKST 60

Query: 61  HIKT-FTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNL 119
             ++ +TT LE+FPGG   FLI A+FCYG RV+ T +N+V+++ AA+YLEMT+E  EDNL
Sbjct: 61  DKQSLWTTVLEEFPGGADNFLIVARFCYGARVDITSKNLVSIHCAAEYLEMTNEYGEDNL 120

Query: 120 VSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWP 179
           +SQ E+F HK+VLR WKDCILALQSS  VL  A++LQ++ K +NA+S M CTDPSLFGWP
Sbjct: 121 ISQVETFLHKHVLRNWKDCILALQSSSPVLKSAEKLQMIPKLMNAVSTMVCTDPSLFGWP 180

Query: 180 MMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPE 239
           MMMYG+LQSPGGSILWNGINTGAR+RSS SDWW+ED+SYLSV LF+RLIKTME +G+R E
Sbjct: 181 MMMYGTLQSPGGSILWNGINTGARMRSSGSDWWYEDISYLSVDLFKRLIKTMETKGIRAE 240

Query: 240 NLAGAIMYYARKYLPGLGRWQGGQSSNT---RRVTSYSLTPAA-------VDQKVLLETI 289
           +LAGA+MYYARKYLPGLGRWQ G S ++   RRV S++L  A+       +DQ  LLETI
Sbjct: 241 SLAGAMMYYARKYLPGLGRWQSGTSDSSKSRRRVVSFNLAKASSPSSMPPLDQIALLETI 300

Query: 290 ENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDS 349
            +LLPEK+G+SFC+FL+GLLRVA ILGV+  C + LE+RIGMQLELATLD LLI NYSDS
Sbjct: 301 LSLLPEKRGRSFCKFLLGLLRVAFILGVDGNCVKKLEKRIGMQLELATLDNLLILNYSDS 360

Query: 350 DTLYNTDCVERIFHHFMTSETI----ITSFSPASADVETSSSSGSLRKVSKLIDSYIAEV 405
           +TLYN DCVERI  HF++S +     +  FSP S D  TS S   L+KV+ L+DSY+AEV
Sbjct: 361 ETLYNVDCVERIVRHFVSSLSSSSSQLPEFSPPSLDPVTSPSPAPLKKVANLVDSYMAEV 420

Query: 406 ASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKL 465
           ASDVNLKP K+RSLA ALP+SSRP +DGLYRA DIYF+ HPWLS+RDKE+LCNI+DYQ+L
Sbjct: 421 ASDVNLKPDKMRSLAAALPESSRPLYDGLYRAFDIYFKEHPWLSDRDKEQLCNIMDYQRL 480

Query: 466 SIDACTHASHNERLPLRVILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAG- 524
           SIDAC HASHN+RLPLRV+LQVLFFEQ+ LRTALA  LN  +TE+A A  +T P    G 
Sbjct: 481 SIDACAHASHNDRLPLRVVLQVLFFEQMHLRTALAGGLNVANTETAHA--VTIPGGRTGQ 538

Query: 525 EIVQRDGWVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEM-KRVTKSHSSLSSPRLV 583
           EIVQRDGWVTV R+N  LKVDM KMRSRVGELEEEF  IKQEM KRV+KS SS+SSPRLV
Sbjct: 539 EIVQRDGWVTVVRQNQVLKVDMQKMRSRVGELEEEFQSIKQEMKKRVSKSSSSMSSPRLV 598

Query: 584 AKKIGCR-LLPRSSDAQADKVEGT-ASTPRASVEQ---PQSSRHSRHRKSFSLF 632
             K+GC+ LLPR+SDA+ D V+ + +STPR++      P+SSRHS+HRKSFS F
Sbjct: 599 --KLGCKFLLPRASDAKNDTVQNSVSSTPRSATADHTLPRSSRHSKHRKSFSFF 650
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function description
>sp|Q8LPQ3|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
359479397633 PREDICTED: BTB/POZ domain-containing pro 0.996 0.995 0.782 0.0
297734863611 unnamed protein product [Vitis vinifera] 0.962 0.995 0.758 0.0
356565719633 PREDICTED: BTB/POZ domain-containing pro 0.995 0.993 0.753 0.0
255573010591 protein binding protein, putative [Ricin 0.933 0.998 0.794 0.0
356543532635 PREDICTED: BTB/POZ domain-containing pro 0.995 0.990 0.740 0.0
45935134652 putative non-phototropic hypocotyl 3-lik 0.995 0.964 0.703 0.0
224102999559 predicted protein [Populus trichocarpa] 0.884 1.0 0.795 0.0
224132096558 predicted protein [Populus trichocarpa] 0.882 1.0 0.785 0.0
240255501651 Phototropic-responsive NPH3 family prote 0.993 0.964 0.668 0.0
9798385661 non-phototropic hypocotyl 3-like protein 0.947 0.906 0.614 0.0
>gi|359479397|ref|XP_003632267.1| PREDICTED: BTB/POZ domain-containing protein At3g44820-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1055 bits (2727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/630 (78%), Positives = 558/630 (88%)

Query: 3   PAGKVSGFHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHI 62
           PA KVSGFHREGNDW+C+A LPSD+TV+VE +NFH+HKFPL+SKC KI +++EESQ  H 
Sbjct: 4   PAAKVSGFHREGNDWFCTASLPSDVTVVVERVNFHIHKFPLISKCGKIEKMFEESQGIHE 63

Query: 63  KTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQ 122
             FTT LE FPGGP  FLIA KFCYG RVE TPRNI+ VY AADYL MTD   E+NL+S+
Sbjct: 64  AKFTTSLEGFPGGPDIFLIAVKFCYGVRVELTPRNIIMVYCAADYLGMTDAYGEENLLSK 123

Query: 123 SESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWPMMM 182
           SESFFHK +LR WKDCILALQSS+ V+P A++L I+SKCLNALSMM  TDPSLFGWPMMM
Sbjct: 124 SESFFHKTILRNWKDCILALQSSDPVMPMAEKLHIISKCLNALSMMVSTDPSLFGWPMMM 183

Query: 183 YGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLA 242
           YGSLQSPGGSILWNGINTGARIRSSESDWWFED+SYL+V LF+RLI+TMEARG+R ENLA
Sbjct: 184 YGSLQSPGGSILWNGINTGARIRSSESDWWFEDISYLNVLLFKRLIQTMEARGIRSENLA 243

Query: 243 GAIMYYARKYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFC 302
           GA+MYY RKYLPGLGRWQ GQS  T  V S+SLTPAAVDQ+VLLE+IE LLPEKKGKSFC
Sbjct: 244 GAVMYYTRKYLPGLGRWQSGQSGKTMTVASFSLTPAAVDQRVLLESIEKLLPEKKGKSFC 303

Query: 303 RFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDSDTLYNTDCVERIF 362
           RFL+GLLRVALILGVN+ CKESL RRIGMQLELATLD LLIP YSDSDTLYN DCVE+I 
Sbjct: 304 RFLLGLLRVALILGVNQTCKESLMRRIGMQLELATLDSLLIPTYSDSDTLYNNDCVEQIV 363

Query: 363 HHFMTSETIITSFSPASADVETSSSSGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVA 422
           HHF++SE  ITSFSPAS D+ETS  SG LRKV+KL+DSYIAEVASDVNLKPGKIRSLA A
Sbjct: 364 HHFISSEPRITSFSPASLDLETSPLSGPLRKVAKLMDSYIAEVASDVNLKPGKIRSLAEA 423

Query: 423 LPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLSIDACTHASHNERLPLR 482
           LP+SSR  HDGLYRALDIYF+AHPWLSE++KE+LCNIIDYQKLSIDAC HAS NERLPLR
Sbjct: 424 LPESSRSLHDGLYRALDIYFKAHPWLSEKEKEQLCNIIDYQKLSIDACAHASQNERLPLR 483

Query: 483 VILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAGEIVQRDGWVTVARENHGL 542
           V+LQVLFFEQ+QLRTALA CL+ +D E+APAGP+T  SDMAG+IVQRDGWVTV REN  L
Sbjct: 484 VVLQVLFFEQMQLRTALAGCLHVIDNENAPAGPITISSDMAGQIVQRDGWVTVVRENQVL 543

Query: 543 KVDMDKMRSRVGELEEEFGKIKQEMKRVTKSHSSLSSPRLVAKKIGCRLLPRSSDAQADK 602
           KVD+++MRSRVGELEEEF K+KQEMK+V+K+HSSL+SPR+VA++IGC+LLPR+SDAQAD 
Sbjct: 544 KVDLERMRSRVGELEEEFTKMKQEMKKVSKTHSSLNSPRMVARRIGCKLLPRASDAQADT 603

Query: 603 VEGTASTPRASVEQPQSSRHSRHRKSFSLF 632
           V+ TA TPRASVEQ +SS HS HRK+FSLF
Sbjct: 604 VDSTAPTPRASVEQARSSYHSGHRKTFSLF 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734863|emb|CBI17097.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356565719|ref|XP_003551085.1| PREDICTED: BTB/POZ domain-containing protein At3g44820-like [Glycine max] Back     alignment and taxonomy information
>gi|255573010|ref|XP_002527435.1| protein binding protein, putative [Ricinus communis] gi|223533170|gb|EEF34927.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356543532|ref|XP_003540214.1| PREDICTED: BTB/POZ domain-containing protein At3g44820-like [Glycine max] Back     alignment and taxonomy information
>gi|45935134|gb|AAS79592.1| putative non-phototropic hypocotyl 3-like protein [Ipomoea trifida] gi|117166025|dbj|BAF36327.1| hypothetical protein [Ipomoea trifida] Back     alignment and taxonomy information
>gi|224102999|ref|XP_002312886.1| predicted protein [Populus trichocarpa] gi|222849294|gb|EEE86841.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224132096|ref|XP_002328184.1| predicted protein [Populus trichocarpa] gi|222837699|gb|EEE76064.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|240255501|ref|NP_190068.4| Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] gi|338819814|sp|Q9FYC8.2|Y3482_ARATH RecName: Full=BTB/POZ domain-containing protein At3g44820 gi|332644437|gb|AEE77958.1| Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9798385|emb|CAC03532.1| non-phototropic hypocotyl 3-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
TAIR|locus:2082132651 AT3G44820 [Arabidopsis thalian 0.963 0.935 0.669 7.7e-222
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.901 0.857 0.477 5.8e-137
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.852 0.910 0.422 1.8e-116
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.854 0.913 0.413 1.8e-112
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.800 0.757 0.410 4.9e-110
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.398 0.337 0.393 6.4e-99
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.487 0.501 0.397 1.1e-95
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.431 0.471 0.358 5.1e-83
TAIR|locus:2077868582 AT3G08660 [Arabidopsis thalian 0.522 0.567 0.342 7.5e-78
TAIR|locus:2046961634 NPY2 "NAKED PINS IN YUC MUTANT 0.886 0.883 0.331 2.7e-77
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2142 (759.1 bits), Expect = 7.7e-222, P = 7.7e-222
 Identities = 423/632 (66%), Positives = 512/632 (81%)

Query:     1 MAPAGKVSGFHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQST 60
             M+P  KVS FHREGNDW+C  GL SDITV+V+ + FHLHKFPLVSKC K+AR+YE+S+ST
Sbjct:     1 MSPVAKVSEFHREGNDWFCKTGLSSDITVVVDDVKFHLHKFPLVSKCGKLARMYEDSKST 60

Query:    61 HIKT-FTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTDEDDEDNL 119
               ++ +TT LE+FPGG   FLI A+FCYG RV+ T +N+V+++ AA+YLEMT+E  EDNL
Sbjct:    61 DKQSLWTTVLEEFPGGADNFLIVARFCYGARVDITSKNLVSIHCAAEYLEMTNEYGEDNL 120

Query:   120 VSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSLFGWP 179
             +SQ E+F HK+VLR WKDCILALQSS  VL  A++LQ++ K +NA+S M CTDPSLFGWP
Sbjct:   121 ISQVETFLHKHVLRNWKDCILALQSSSPVLKSAEKLQMIPKLMNAVSTMVCTDPSLFGWP 180

Query:   180 MMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPE 239
             MMMYG+LQSPGGSILWNGINTGAR+RSS SDWW+ED+SYLSV LF+RLIKTME +G+R E
Sbjct:   181 MMMYGTLQSPGGSILWNGINTGARMRSSGSDWWYEDISYLSVDLFKRLIKTMETKGIRAE 240

Query:   240 NLAGAIMYYARKYLPGLGRWQGGQSSNT---RRVTSYSLTPAA-------VDQKVLLETI 289
             +LAGA+MYYARKYLPGLGRWQ G S ++   RRV S++L  A+       +DQ  LLETI
Sbjct:   241 SLAGAMMYYARKYLPGLGRWQSGTSDSSKSRRRVVSFNLAKASSPSSMPPLDQIALLETI 300

Query:   290 ENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDS 349
              +LLPEK+G+SFC+FL+GLLRVA ILGV+  C + LE+RIGMQLELATLD LLI NYSDS
Sbjct:   301 LSLLPEKRGRSFCKFLLGLLRVAFILGVDGNCVKKLEKRIGMQLELATLDNLLILNYSDS 360

Query:   350 DTLYNTDCVERIFHHFMTSETIITS----FSPASADVETXXXXXXLRKVSKLIDSYIAEV 405
             +TLYN DCVERI  HF++S +  +S    FSP S D  T      L+KV+ L+DSY+AEV
Sbjct:   361 ETLYNVDCVERIVRHFVSSLSSSSSQLPEFSPPSLDPVTSPSPAPLKKVANLVDSYMAEV 420

Query:   406 ASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKL 465
             ASDVNLKP K+RSLA ALP+SSRP +DGLYRA DIYF+ HPWLS+RDKE+LCNI+DYQ+L
Sbjct:   421 ASDVNLKPDKMRSLAAALPESSRPLYDGLYRAFDIYFKEHPWLSDRDKEQLCNIMDYQRL 480

Query:   466 SIDACTHASHNERLPLRVILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAG- 524
             SIDAC HASHN+RLPLRV+LQVLFFEQ+ LRTALA  LN  +TE+A A  +T P    G 
Sbjct:   481 SIDACAHASHNDRLPLRVVLQVLFFEQMHLRTALAGGLNVANTETAHA--VTIPGGRTGQ 538

Query:   525 EIVQRDGWVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEMK-RVTKSHSSLSSPRLV 583
             EIVQRDGWVTV R+N  LKVDM KMRSRVGELEEEF  IKQEMK RV+KS SS+SSPRLV
Sbjct:   539 EIVQRDGWVTVVRQNQVLKVDMQKMRSRVGELEEEFQSIKQEMKKRVSKSSSSMSSPRLV 598

Query:   584 AKKIGCR-LLPRSSDAQADKVEGT-ASTPRAS 613
               K+GC+ LLPR+SDA+ D V+ + +STPR++
Sbjct:   599 --KLGCKFLLPRASDAKNDTVQNSVSSTPRSA 628
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FYC8Y3482_ARATHNo assigned EC number0.66810.99360.9646yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
pfam03000249 pfam03000, NPH3, NPH3 family 1e-119
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-05
pfam00651101 pfam00651, BTB, BTB/POZ domain 6e-05
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  355 bits (913), Expect = e-119
 Identities = 136/263 (51%), Positives = 178/263 (67%), Gaps = 15/263 (5%)

Query: 209 SDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTR 268
            DWWFEDLS LS+ LF+R+I  M++RG++PE +  A+M+YA+K+LPGL R          
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRS--------- 51

Query: 269 RVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERR 328
                S   +  +Q+ LLETI +LLP +KG   C FL  LLR A+ILG +E C+E LERR
Sbjct: 52  ---GSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERR 108

Query: 329 IGMQLELATLDCLLIPN-YSDSDTLYNTDCVERIFHHFMTSETIITSFSPASADVETSSS 387
           IG+QL+ ATLD LLIP+ YS  +TLY+ D V+RI   F+       + S    D E S S
Sbjct: 109 IGLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFL--SRDAATQSSDDEDSEASPS 166

Query: 388 SGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPW 447
           S SL KV+KL+D Y+AE+A D NLK  K  +LA A+PDS+RP HDGLYRA+DIY +AHP 
Sbjct: 167 SSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPN 226

Query: 448 LSERDKEELCNIIDYQKLSIDAC 470
           LSE +K+ LC ++D QKLS +AC
Sbjct: 227 LSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.94
PHA02713557 hypothetical protein; Provisional 99.93
PHA02790480 Kelch-like protein; Provisional 99.9
PHA03098534 kelch-like protein; Provisional 99.89
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.67
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.55
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.27
KOG4350620 consensus Uncharacterized conserved protein, conta 99.12
KOG4591280 consensus Uncharacterized conserved protein, conta 98.88
KOG4682488 consensus Uncharacterized conserved protein, conta 98.61
KOG07831267 consensus Uncharacterized conserved protein, conta 98.35
KOG07831267 consensus Uncharacterized conserved protein, conta 98.14
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.74
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.0
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.64
KOG2716230 consensus Polymerase delta-interacting protein PDI 96.38
KOG3473112 consensus RNA polymerase II transcription elongati 95.03
KOG2838401 consensus Uncharacterized conserved protein, conta 94.46
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.18
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.64
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 91.71
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 87.72
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 85.32
KOG2838401 consensus Uncharacterized conserved protein, conta 85.11
KOG0511516 consensus Ankyrin repeat protein [General function 84.02
KOG3840438 consensus Uncharaterized conserved protein, contai 80.61
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=1.4e-88  Score=693.16  Aligned_cols=257  Identities=53%  Similarity=0.874  Sum_probs=229.3

Q ss_pred             CcccccccccCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCCcCCCCCCCccccccCCCChhhHHHHHHHHH
Q 006765          209 SDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLET  288 (632)
Q Consensus       209 ~dWW~EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL~~Yakk~lpg~~~~~~~~~~~~~~~~~~~~~~~~~~qr~LLEt  288 (632)
                      +||||||++.|++++|+|||.+|+++|+++++|+++|++||+||+||+++......     ...........+||.+||+
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~-----~~~~~~~~~~~~~r~llEt   75 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSS-----SSAESSTSSENEQRELLET   75 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccc-----ccccccchhHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999865421111     1122345678899999999


Q ss_pred             HHHhcCCCCCCcchHHHHHHHHHHHhhCCCHHHHHHHHHHHhccccccccccccccCCCCC-CcccchHHHHHHHHHHhc
Q 006765          289 IENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDS-DTLYNTDCVERIFHHFMT  367 (632)
Q Consensus       289 Iv~lLp~~k~~vs~~fLf~LLR~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLiPs~~~~-~tlyDvd~V~ril~~Fl~  367 (632)
                      ||+|||.+++++||+|||+|||+|+++++|+.||.+||+|||+|||||||||||||+.+.. +|+||||+|+|||++||.
T Consensus        76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~  155 (258)
T PF03000_consen   76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLS  155 (258)
T ss_pred             HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999993333 699999999999999999


Q ss_pred             ccccccCCCCCCcccccCCCchhhhHHHHHHHHHHHHhccCCCCChhhHHHHHHhcCCCCCCcchhHHHHHHHHHHhCCC
Q 006765          368 SETIITSFSPASADVETSSSSGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPW  447 (632)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEvA~D~nL~~~kF~~Lae~lPd~aR~~~DgLYrAIDiYLK~Hp~  447 (632)
                      +++..+............++.+++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||||||+||+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~  235 (258)
T PF03000_consen  156 QEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPG  235 (258)
T ss_pred             cccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHccc
Confidence            86543311111122345678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHhhhhcccccCCCCHHHh
Q 006765          448 LSERDKEELCNIIDYQKLSIDAC  470 (632)
Q Consensus       448 lse~Er~~lC~~ldcqKLS~EAc  470 (632)
                      ||++||++||++|||||||+|||
T Consensus       236 ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  236 LSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             CCHHHHHHHHhhCCcccCCcccC
Confidence            99999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 5e-05
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-04
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-04
2vpk_A116 Myoneurin; transcription regulation, transcription 5e-04
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 5e-04
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 7e-04
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 9e-07
 Identities = 53/406 (13%), Positives = 114/406 (28%), Gaps = 133/406 (32%)

Query: 287 ETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNY 346
           E I++++  K   S    L   L          K +E +++ +   L           NY
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLL--------SKQEEMVQKFVEEVLR---------INY 91

Query: 347 --------------SDSDTLYNTDCVERIFHHFMTSETIITSFSPASADVETSSSSGSLR 392
                         S    +Y  +  +R++            F+  +  V        L+
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYI-EQRDRLY-------NDNQVFAKYN--VS------RLQ 135

Query: 393 KVSKLIDSYIAEVASDVNLKP------------GKIRSLAV-ALPDSS--RPFHDGLYRA 437
              KL  + +        L+P            GK   +A+               ++  
Sbjct: 136 PYLKLRQALL-------ELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIF-- 185

Query: 438 LDIYFQAHPWLS---ERDKEELCNIID--YQKLSIDACTHASHNERLPLRV-----ILQV 487
                    WL+       E +  ++     ++  +  + + H+  + LR+      L+ 
Sbjct: 186 ---------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 488 LFFEQLQLRTAL--------ASCLNALDTESAPAGPLTGPSDMAGEIVQRDGWVT-VARE 538
           L   +      L        A   NA +        L         +  R   VT     
Sbjct: 237 LLKSK-PYENCLLVLLNVQNAKAWNAFNLSCK---IL---------LTTRFKQVTDFLSA 283

Query: 539 NHGLKVDMDKMRSRV--GELEEEFGKI----KQEMKRVTKSHSSLSSPRLVAKKIGCRL- 591
                + +D     +   E++    K      Q++ R   +     +PR ++  I   + 
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT----NPRRLS-IIAESIR 338

Query: 592 -----LPRSSDAQADKVEGTASTPRASVEQPQSSRHSRHRKSFSLF 632
                         DK+    +   +S+   + + + +     S+F
Sbjct: 339 DGLATWDNWKHVNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVF 381
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.94
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.93
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.85
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.83
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.83
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.83
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.83
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.83
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.83
2vpk_A116 Myoneurin; transcription regulation, transcription 99.82
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.81
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.81
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.81
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.81
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.81
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.8
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.79
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.77
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.73
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.33
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.1
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.03
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.86
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.29
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.25
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.23
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.62
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.56
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.16
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.32
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 94.8
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 93.89
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 93.39
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 92.41
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 91.71
3vmx_A48 Voltage-gated hydrogen channel 1; coiled-coil, ION 83.07
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.94  E-value=1e-27  Score=242.14  Aligned_cols=230  Identities=13%  Similarity=0.082  Sum_probs=170.0

Q ss_pred             hhhhhhcCCCeeEEEEECCEEEEeeccccccccHHHHHhhhcccC-CCCccceEEecCCCCCHHHHHHHHHhhcCCcccc
Q 006765           15 NDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQS-THIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEF   93 (632)
Q Consensus        15 ~~w~r~~g~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e-~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~i   93 (632)
                      -..++.+|.+|||+|.|||+.|++||.+|+++|+||++||+.+.. ......+|.|+++  .+++|+.+++|+|||++.+
T Consensus        22 l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v--~~~~f~~ll~~~Yt~~~~i   99 (256)
T 3hve_A           22 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI--SVMVMREILDYIFSGQIRL   99 (256)
T ss_dssp             HHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSC--CHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCC--CHHHHHHHHhhccCCCCcc
Confidence            345789999999999999999999999999999999999987532 1112578999999  4799999999999999999


Q ss_pred             CcchHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhc---hhHHHHHHHHHHhc
Q 006765           94 TPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQ---ILSKCLNALSMMAC  170 (632)
Q Consensus        94 t~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~---Iv~RCidsLa~kac  170 (632)
                      +.+||..++.||++|||++      |++.|+.||.+.+..         .||..++.+|+.++   +...|.+-|+... 
T Consensus       100 ~~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f-  163 (256)
T 3hve_A          100 NEDTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAA---------ENCIGIRDFALHYCLHHVHYLATEYLETHF-  163 (256)
T ss_dssp             C-CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCS---------STTHHHHHHHHHTTCHHHHHHHHHHHHHHH-
T ss_pred             cHhHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCH---------hhHHHHHHHHHHcCcHHHHHHHHHHHHHHH-
Confidence            9999999999999999998      999999999999854         59999999999987   4555655554432 


Q ss_pred             CCCCCCcccccccCCCCCCCCCccccccccCcccCCCCCcccccccccCChHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 006765          171 TDPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYAR  250 (632)
Q Consensus       171 ~d~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~~dWW~EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL~~Yak  250 (632)
                         ..+                                  +-.+++..|+.+.+..+|+.......+++.|..+++.|++
T Consensus       164 ---~~v----------------------------------~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~  206 (256)
T 3hve_A          164 ---RDV----------------------------------SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIA  206 (256)
T ss_dssp             ---HHH----------------------------------TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCC
T ss_pred             ---HHH----------------------------------hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHH
Confidence               000                                  0036888999999999999988888889999999999986


Q ss_pred             hhcCCCCCcCCCCCCCccccccCCCChhhHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhCCC-HHHHHHHHH
Q 006765          251 KYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVN-EKCKESLER  327 (632)
Q Consensus       251 k~lpg~~~~~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lLp~~k~~vs~~fLf~LLR~A~~l~as-~~cr~~LE~  327 (632)
                      +..+.  |                    ...-..|++.|+.      +.+|..||...+.....+..+ +.|+.-|++
T Consensus       207 ~~~~~--R--------------------~~~~~~ll~~VRf------~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          207 HDTEI--R--------------------KVHMKDVMSALWV------SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             C--CC--S--------------------TTTHHHHHHHHHH------HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             cCHHH--H--------------------HHHHHHHHHhCCC------CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence            54322  1                    2345789999986      568888999999988888888 689988875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 632
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 2e-08
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-08
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 25  SDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAK 84
            D+ ++V+   FH H+  L         ++  +   +   F +        P TF    +
Sbjct: 29  CDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLS--------PKTFQQILE 80

Query: 85  FCYGHRVEFTPRNIVTVYAAADYLEMTD 112
           + Y   ++    ++  +  AA+ LE+  
Sbjct: 81  YAYTATLQAKAEDLDDLLYAAEILEIEY 108
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.84
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.84
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.49
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.24
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.66
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.43
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.26
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.37
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 90.56
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8e-22  Score=177.43  Aligned_cols=99  Identities=19%  Similarity=0.314  Sum_probs=92.3

Q ss_pred             hhhhcCCCeeEEEEECCEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCccccCcc
Q 006765           17 WYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPR   96 (632)
Q Consensus        17 w~r~~g~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~~   96 (632)
                      -+|.+|.+|||+|.|+|.+|++||.+|+++|+||++||.++      ..++.++++  .+++|+.+++|+|||++.++.+
T Consensus        21 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~------~~~i~~~~v--~~~~f~~ll~~~Ytg~i~l~~~   92 (121)
T d1buoa_          21 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN------SQHYTLDFL--SPKTFQQILEYAYTATLQAKAE   92 (121)
T ss_dssp             HHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC------CSEEEECSS--CHHHHHHHHHHHHHSCCCCCGG
T ss_pred             HHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc------cceeecCCC--CHHHHHHHHHheEccccCCcHH
Confidence            36889999999999999999999999999999999999653      247889998  5799999999999999999999


Q ss_pred             hHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHH
Q 006765           97 NIVTVYAAADYLEMTDEDDEDNLVSQSESFFHK  129 (632)
Q Consensus        97 NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~  129 (632)
                      ||..++.||++|+|++      |.+.|++||+.
T Consensus        93 ~v~~ll~~A~~l~~~~------L~~~C~~~L~~  119 (121)
T d1buoa_          93 DLDDLLYAAEILEIEY------LEEQCLKMLET  119 (121)
T ss_dssp             GHHHHHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence            9999999999999998      99999999976
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure