Citrus Sinensis ID: 006780

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-
MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAEENAYSDDKPDDVRHDDKVGVLEEESFDQGKAENVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENTEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEPYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELNKKQPQHHDEL
ccEEHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccEEEEEEEcccccEEccccccccccccccccccEEEEEEccccccccccccEEEEEEEEcccccEEEcccccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccc
ccEEEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccEEEEccccEEcHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEccHHHHHcccccccccccccccccccHHHHccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccHHHHccccHHccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccEEEEccEEEEEEEccccEEEcccccccEccEEcccccccEEEEEccccccccccccEEEEEEEEccccEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccc
MRVVLVDFRFTYAIVLSLLWVSSsvigrsnaassllndpfygispqdenyyktssntikckdgskKFAKtqlnddycdcpdgtdepdccdgsdeydgkvkcpntcweAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAeenaysddkpddvrhddkvgvleeesfdqgkaenvdeepateakqigtsqnlgtpvngveQHATEEMEqsassrskdgsstvpetssdaesqmppeaekkeeknlengvsenteeLSREELGRLVASrwtgektekqsgeggaianddqgedvpeynhddeedryatdtdddserydtekyddndveddidepyreedhdytstsyktdvdddldmsemttpsspsWLEKIQQTVRNILQAVNlfqtpvdksdaarVRKEYDESSDKLSKIQSRISSLTQKLkhefgpekefysfyghcfeskqnkyvykvcpykkatqeeghsttrlgswdkfedSYHIMLFsngdkcwngpdrsmkVRLRcglknevtdvdepsrcEYVALLytpavcseEKLQELQHKLDElnkkqpqhhdel
MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTssntikckdgskkFAKTQLNDDYCDCPDGTDEPDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATyqegvllrkKEIEQAKQNLVkdeaelsnlkneeKILKGLVQQLKERKEQIEkaeekerlqrekeekerkeaeenerkeksesgekaMQEKNKaeenaysddkpddvRHDDKVGVLEeesfdqgkaenvdeEPATEakqigtsqnlgtpVNGVEQHATEEMeqsassrskdgsstvpetssdaesqmppeaekkeeknlengvsenteelsreeLGRLvasrwtgektekqsgeggaianddqgedvpeynhddeedryatdtdddserydtekyddndveddidepyreedhdytstsyktdvdddldMSEMTTPSSPSWLEKIQQTVRNILQAVnlfqtpvdksdaarvrkeydessdklskiQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKkatqeeghsttrlgswDKFEDSYHIMLFsngdkcwngpDRSMKVRLRCGlknevtdvdepsrCEYVALLYTPAVCSEEKLQELQHKLDelnkkqpqhhdel
MRVVLVDFRFTYAIvlsllwvsssvIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIekaeekerlqrekeekerkeaeenerkeksesgekAMQEKNKAEENAYSddkpddvrhddkvGVLEEESFDQGKAENVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAekkeekNLENGVSENTEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYdtekyddndveddidePYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELNKKQPQHHDEL
**VVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISP**ENYYK*****IKC******FAKTQLNDDYCDCPDGTDEPDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRK**********************************************************************************************************************************************************************************************************************************************************************************************************************WLEKIQQTVRNILQAVNLFQT***************************************GPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQ***HSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCS*************************
***VLVDFRFTYAIVLSLLWVSSSVIGRSNA***********ISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCCDGSDEYDGKVKCPNTCW************************KKEIEQAKQNLVKD***********************************************************************************************ESFDQGKAENVDEEPATEAKQIGTSQNLGTPVNGV**********************************************************************************************************************************************************************SWLEKIQQTVRNIL********************************************HEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEE***********************
MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQI*******************************************************VRHDDKVGVLEEE*******************QIGTSQNLGTPVNGVE**********************************************************EELGRLVASRW************GAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEPYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDK*********************SRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKA*********RLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELN**********
*RVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKERKEAE***************************************VGVLE*****Q******************************************************************************************************************************************************************************************MSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELNKKQ*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAYSDDKPDDVRHDDKVGVLEEESFDQGKAENVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENTEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEPYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPxxxxxxxxxxxxxxxxxxxxxxxxxxxxL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query631 2.2.26 [Sep-21-2011]
O08795521 Glucosidase 2 subunit bet yes no 0.212 0.257 0.404 5e-25
P14314528 Glucosidase 2 subunit bet yes no 0.209 0.25 0.395 2e-24
Q28034533 Glucosidase 2 subunit bet yes no 0.196 0.232 0.318 4e-13
Q9USH8506 Glucosidase 2 subunit bet yes no 0.134 0.167 0.362 5e-11
Q6S5C2 307 N-acetylglucosamine-1-pho no no 0.166 0.342 0.336 7e-10
Q58CS8 306 N-acetylglucosamine-1-pho no no 0.167 0.346 0.333 8e-10
Q9UJJ9305 N-acetylglucosamine-1-pho no no 0.194 0.403 0.302 2e-09
>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1 Back     alignment and function desciption
 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 7/141 (4%)

Query: 468 DAAR-VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKV 526
           DAA+  R +++E    L +++  I SL Q++  +FGP  EF   Y  C+E   N+YVY++
Sbjct: 361 DAAQEARSKFEEVERSLKEMEESIRSLEQEISFDFGPSGEFAYLYSQCYELTTNEYVYRL 420

Query: 527 CPYKKATQEEGH--STTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGL 580
           CP+K  +Q+  H  S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG 
Sbjct: 421 CPFKLVSQKPKHGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGK 480

Query: 581 KNEVTDVDEPSRCEYVALLYT 601
           +  VT   EPSRCEY+  L T
Sbjct: 481 ETVVTSTTEPSRCEYLMELMT 501
Regulatory subunit of glucosidase II.
Mus musculus (taxid: 10090)
>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2 Back     alignment and function description
>sp|Q28034|GLU2B_BOVIN Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1 Back     alignment and function description
>sp|Q9USH8|GLU2B_SCHPO Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtb1 PE=1 SV=1 Back     alignment and function description
>sp|Q6S5C2|GNPTG_MOUSE N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Mus musculus GN=Gnptg PE=2 SV=1 Back     alignment and function description
>sp|Q58CS8|GNPTG_BOVIN N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Bos taurus GN=GNPTG PE=1 SV=4 Back     alignment and function description
>sp|Q9UJJ9|GNPTG_HUMAN N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Homo sapiens GN=GNPTG PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query631
359478816638 PREDICTED: glucosidase 2 subunit beta-li 0.957 0.946 0.595 0.0
255564808683 glucosidase II beta subunit, putative [R 0.966 0.893 0.592 0.0
224075960645 predicted protein [Populus trichocarpa] 0.927 0.906 0.602 0.0
224056927635 predicted protein [Populus trichocarpa] 0.946 0.940 0.584 0.0
356521616634 PREDICTED: glucosidase 2 subunit beta-li 0.914 0.910 0.569 1e-177
357475089639 Glucosidase ii beta subunit [Medicago tr 0.938 0.926 0.540 1e-170
356577145650 PREDICTED: LOW QUALITY PROTEIN: glucosid 0.927 0.9 0.544 1e-168
449519036641 PREDICTED: LOW QUALITY PROTEIN: glucosid 0.917 0.903 0.518 1e-165
297796507653 calmodulin-binding protein [Arabidopsis 0.960 0.928 0.551 1e-161
30696733647 protein kinase C substrate 80K-H [Arabid 0.909 0.887 0.561 1e-159
>gi|359478816|ref|XP_002283762.2| PREDICTED: glucosidase 2 subunit beta-like [Vitis vinifera] gi|297746510|emb|CBI16566.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/665 (59%), Positives = 497/665 (74%), Gaps = 61/665 (9%)

Query: 1   MRVVLVDFRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKTSSNTIKC 60
           M++ +V       ++L +L++S   IGRS + S L  +PF GI+PQDENYYKTSS   KC
Sbjct: 1   MKIYIVIHNL--FLILGVLFISQ--IGRSASKSLLSTNPFLGIAPQDENYYKTSSEIFKC 56

Query: 61  KDGSKKFAKTQLNDDYCDCPDGTDEP--------------------------------DC 88
           KDGSKK  + Q+NDD+CDCPD +DEP                                DC
Sbjct: 57  KDGSKKLNRAQVNDDFCDCPDASDEPGTSACPGGKFYCRNAGHVPLLLFSSRVNDGICDC 116

Query: 89  CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAEL 148
           CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKI TY+EGV LRK++IEQAK  + K+E EL
Sbjct: 117 CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIVTYKEGVTLRKQQIEQAKLAIAKEEEEL 176

Query: 149 SNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKA 208
           S LK+EEKILKGLVQQLK+RKEQIEKAEEKERLQ+E+EEK+R+EAEE   KEKS++ ++A
Sbjct: 177 SKLKSEEKILKGLVQQLKDRKEQIEKAEEKERLQKEEEEKKRREAEEEANKEKSKAEKEA 236

Query: 209 MQEKNKAEENAYSDDKPDDVRHDDKVGVLEEESFDQGKAENVDEEPATEAKQIGTSQNLG 268
            QEKN+ +E   S+++P +  HDDK+GVL+++  ++ K+ +V      E +    S+N  
Sbjct: 237 NQEKNEVKEQVGSEEEPMESTHDDKIGVLDQD-VEEDKSNSV-----AEVEHTDKSEN-A 289

Query: 269 TPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENT 328
           +P +G+EQHA E          K+ S  V ET   A +++ P +++  ++  EN V+ENT
Sbjct: 290 SPTDGIEQHAAE---------GKEESPVVHETDLHAGNEVSPTSDQATKQ--ENDVAENT 338

Query: 329 EELSREELGRLVASRWTGEKTEKQSGEGGAIAND--DQGEDVPEYNHDDEEDRYATDTDD 386
           E LSREELGRLVASRWTGE T + + E  A+ +D  +  E+ PE  H +E D YA++TDD
Sbjct: 339 EGLSREELGRLVASRWTGENTGQHTEEVDAVKHDHHESHEETPEDTHAEEYDGYASETDD 398

Query: 387 DSERYDTEKYDDNDVEDDIDEPYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKI 446
           DS+R     YD++D+ED +DE + E+DH  +S  YK+D +D+ D S++T+ S+PSWLEKI
Sbjct: 399 DSQR-----YDNDDMEDPVDEDFGEDDHYDSSPPYKSDTEDESDFSDITSTSNPSWLEKI 453

Query: 447 QQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKE 506
           QQTVRNIL AVNLFQTPVDKS+AA +RKEYDESS KLSK+QSRISSLTQKLKH+FGPEKE
Sbjct: 454 QQTVRNILNAVNLFQTPVDKSEAAHIRKEYDESSAKLSKMQSRISSLTQKLKHDFGPEKE 513

Query: 507 FYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWN 566
           FYSFY  CFESK+NKYVYK+CP+K+A+QEEGHSTTRLG WDKFEDSY  MLFSNG+KCWN
Sbjct: 514 FYSFYDQCFESKENKYVYKLCPFKQASQEEGHSTTRLGRWDKFEDSYRTMLFSNGEKCWN 573

Query: 567 GPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQELQHKLDELNKKQPQ 626
           GPDRS+KV+LRCGLKNEVTDVDEPSRCEYVALL TPA+C EEKL+ELQ KL+ +N++QPQ
Sbjct: 574 GPDRSLKVKLRCGLKNEVTDVDEPSRCEYVALLSTPALCLEEKLKELQQKLELMNQEQPQ 633

Query: 627 HHDEL 631
             DEL
Sbjct: 634 GRDEL 638

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564808|ref|XP_002523398.1| glucosidase II beta subunit, putative [Ricinus communis] gi|223537348|gb|EEF38977.1| glucosidase II beta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224075960|ref|XP_002304848.1| predicted protein [Populus trichocarpa] gi|222842280|gb|EEE79827.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056927|ref|XP_002299093.1| predicted protein [Populus trichocarpa] gi|222846351|gb|EEE83898.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521616|ref|XP_003529450.1| PREDICTED: glucosidase 2 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|357475089|ref|XP_003607830.1| Glucosidase ii beta subunit [Medicago truncatula] gi|355508885|gb|AES90027.1| Glucosidase ii beta subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|356577145|ref|XP_003556688.1| PREDICTED: LOW QUALITY PROTEIN: glucosidase 2 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|449519036|ref|XP_004166541.1| PREDICTED: LOW QUALITY PROTEIN: glucosidase 2 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297796507|ref|XP_002866138.1| calmodulin-binding protein [Arabidopsis lyrata subsp. lyrata] gi|297311973|gb|EFH42397.1| calmodulin-binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30696733|ref|NP_568840.3| protein kinase C substrate 80K-H [Arabidopsis thaliana] gi|10177834|dbj|BAB11263.1| unnamed protein product [Arabidopsis thaliana] gi|332009370|gb|AED96753.1| protein kinase C substrate 80K-H [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query631
TAIR|locus:2161078647 PSL4 "PRIORITY IN SWEET LIFE 4 0.581 0.567 0.563 2.7e-139
DICTYBASE|DDB_G0271120524 DDB_G0271120 "protein kinase C 0.578 0.696 0.268 2e-40
UNIPROTKB|K7ELL7535 PRKCSH "Glucosidase 2 subunit 0.221 0.261 0.408 5.4e-38
FB|FBgn0032643548 CG6453 [Drosophila melanogaste 0.240 0.277 0.341 8.6e-38
UNIPROTKB|F1S596537 PRKCSH "Uncharacterized protei 0.316 0.372 0.331 3.9e-37
UNIPROTKB|Q28034533 PRKCSH "Glucosidase 2 subunit 0.316 0.375 0.339 6.3e-37
RGD|1309628525 Prkcsh "protein kinase C subst 0.288 0.346 0.355 6.4e-37
UNIPROTKB|E2RKK6537 PRKCSH "Uncharacterized protei 0.221 0.260 0.401 7.2e-37
ZFIN|ZDB-GENE-040426-770529 prkcsh "protein kinase C subst 0.328 0.391 0.315 8.1e-37
UNIPROTKB|P14314528 PRKCSH "Glucosidase 2 subunit 0.307 0.367 0.330 1.2e-36
TAIR|locus:2161078 PSL4 "PRIORITY IN SWEET LIFE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1046 (373.3 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
 Identities = 218/387 (56%), Positives = 271/387 (70%)

Query:   251 DEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPP 310
             DEEPA E +         T  N  ++H  E  E+S SS  +D SS   E+ +D  ++   
Sbjct:   275 DEEPAAEGEPTSILDE-ATHTNPADEHVVERKEESTSS--EDSSSPTDESQNDGSAE--- 328

Query:   311 EAXXXXXXNLENGVSENTEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQG--EDV 368
             +        +E+ V+E  EELS+EELGRLVASRWTGEK++K +        DDQ   E  
Sbjct:   329 KEESDEVKKVEDFVTEKKEELSKEELGRLVASRWTGEKSDKPTEADDIPKADDQENHEHT 388

Query:   369 PEYNHD-DEEDRYATDTDDDSERYXXXXXXXXXXXXXXXXPYREE-DHDYTSTSYKTDVD 426
             P   H+ DE+D + +D D+D+                    Y EE  HD +S+SYK+D D
Sbjct:   389 PITAHEADEDDGFVSDGDEDTS-----DDGKYSDHEPEDDSYEEEYRHD-SSSSYKSDAD 442

Query:   427 DDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQT-PVDKSDAARVRKEYDESSDKLSK 485
             DD+D SE T  S+P+WLEKIQ+TV+NIL AVNLFQT PVDKS+A RVRKEYDESS KL+K
Sbjct:   443 DDVDFSETT--SNPTWLEKIQKTVKNILLAVNLFQTTPVDKSEADRVRKEYDESSSKLNK 500

Query:   486 IQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGS 545
             IQSRISSL +KLK +FGPEKEFYSF+G CFESKQ KY YKVC YK+ATQEEG+S TRLG 
Sbjct:   501 IQSRISSLEKKLKQDFGPEKEFYSFHGRCFESKQGKYTYKVCAYKEATQEEGYSKTRLGE 560

Query:   546 WDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVC 605
             WDKFE+SY  M ++NG+KCWNGPDRS+KV+LRCGLKNE+ DVDEPSRCEY A+L TPA C
Sbjct:   561 WDKFENSYQFMSYTNGEKCWNGPDRSLKVKLRCGLKNELMDVDEPSRCEYAAILSTPARC 620

Query:   606 SEEKLQELQHKLDEL-NKKQPQHHDEL 631
              E+KL+ELQ KL++L N+ +PQ+HDEL
Sbjct:   621 LEDKLKELQQKLEKLMNQDKPQNHDEL 647
GO:0009507 "chloroplast" evidence=ISM
GO:0005516 "calmodulin binding" evidence=TAS;IPI
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
DICTYBASE|DDB_G0271120 DDB_G0271120 "protein kinase C substrate 80K-H homolog" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|K7ELL7 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0032643 CG6453 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1S596 PRKCSH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q28034 PRKCSH "Glucosidase 2 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1309628 Prkcsh "protein kinase C substrate 80K-H" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKK6 PRKCSH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-770 prkcsh "protein kinase C substrate 80K-H" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P14314 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query631
pfam13015154 pfam13015, PRKCSH_1, Glucosidase II beta subunit-l 3e-22
pfam12999176 pfam12999, PRKCSH-like, Glucosidase II beta subuni 4e-13
pfam0791573 pfam07915, PRKCSH, Glucosidase II beta subunit-lik 2e-07
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 5e-07
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 1e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-06
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-05
TIGR03346852 TIGR03346, chaperone_ClpB, ATP-dependent chaperone 7e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
pfam10211189 pfam10211, Ax_dynein_light, Axonemal dynein light 8e-05
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 8e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-04
PRK05035695 PRK05035, PRK05035, electron transport complex pro 3e-04
PTZ003411136 PTZ00341, PTZ00341, Ring-infected erythrocyte surf 3e-04
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 4e-04
TIGR02794346 TIGR02794, tolA_full, TolA protein 4e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 4e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 4e-04
pfam09756189 pfam09756, DDRGK, DDRGK domain 5e-04
COG3064387 COG3064, TolA, Membrane protein involved in colici 5e-04
PTZ003411136 PTZ00341, PTZ00341, Ring-infected erythrocyte surf 0.001
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.003
pfam03344715 pfam03344, Daxx, Daxx Family 0.004
PRK00106535 PRK00106, PRK00106, hypothetical protein; Provisio 0.004
>gnl|CDD|205196 pfam13015, PRKCSH_1, Glucosidase II beta subunit-like protein Back     alignment and domain information 
 Score = 93.4 bits (232), Expect = 3e-22
 Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 474 KEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKAT 533
              DE    + KI+S I+ L + L   +GP+    ++ G   + K   Y YKVC      
Sbjct: 3   MSIDEHEKDIKKIESDITILEENLNSRYGPDDILRAYEGRETKEKIGGYTYKVCFLGSIF 62

Query: 534 QEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRC 593
           Q++      +G++ K E +   + + NG KCWNGP RS  V + CG  NE+  V EP +C
Sbjct: 63  QDDIS----IGNFKKQEGN--KLYYENGAKCWNGPHRSAIVEVECGDVNELVSVSEPEKC 116

Query: 594 EYVALLYTPAVCSEEKLQE 612
           EY+ ++ +PA C    L +
Sbjct: 117 EYLFVVKSPAACDNVYLVK 135

The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II, which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyzes the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum. The beta-subunit confers substrate specificity for di- and monoglucosylated glycans on the glucose-trimming activity of the alpha-subunit. Length = 154
>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like Back     alignment and domain information
>gnl|CDD|219639 pfam07915, PRKCSH, Glucosidase II beta subunit-like protein Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 631
KOG2397480 consensus Protein kinase C substrate, 80 KD protei 100.0
PF13015154 PRKCSH_1: Glucosidase II beta subunit-like protein 100.0
PF12999176 PRKCSH-like: Glucosidase II beta subunit-like 100.0
KOG3394 502 consensus Protein OS-9 [General function predictio 99.71
PF12999176 PRKCSH-like: Glucosidase II beta subunit-like 99.7
KOG2397480 consensus Protein kinase C substrate, 80 KD protei 99.49
PF0791581 PRKCSH: Glucosidase II beta subunit-like protein; 98.93
PF02157278 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 97.61
cd0011235 LDLa Low Density Lipoprotein Receptor Class A doma 97.38
smart0019233 LDLa Low-density lipoprotein receptor domain class 97.07
PF0005737 Ldl_recept_a: Low-density lipoprotein receptor dom 96.99
PF00878145 CIMR: Cation-independent mannose-6-phosphate recep 96.39
KOG4504 370 consensus Cation-independent mannose-6-phosphate r 95.26
PF09451268 ATG27: Autophagy-related protein 27; InterPro: IPR 94.81
KOG3394502 consensus Protein OS-9 [General function predictio 94.3
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 82.25
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-68  Score=568.76  Aligned_cols=413  Identities=34%  Similarity=0.561  Sum_probs=296.7

Q ss_pred             CCCCccccccccCCCCcEEecCCCCccccccccCCccCCCCCCCCC--------------------------------CC
Q 006780           41 YGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP--------------------------------DC   88 (631)
Q Consensus        41 rGV~p~~~~~Y~~~~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEP--------------------------------dC   88 (631)
                      -|+++.+.+||+ .+..|+|+|||.+|+|++|||+||||+||||||                                ||
T Consensus        29 v~~~~~~~~~y~-as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDC  107 (480)
T KOG2397|consen   29 VALSIENLYLYD-ASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDC  107 (480)
T ss_pred             cccccccccccc-cccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCccccc
Confidence            455566888888 677999999999999999999999999999999                                79


Q ss_pred             CCCcccccCcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006780           89 CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKER  168 (631)
Q Consensus        89 CDgSDE~~g~~~C~n~C~e~gk~~r~~~~~k~e~~~~G~k~r~eli~~~~~~~~e~~~~l~~L~~e~~~le~~~e~l~~~  168 (631)
                      ||||||+.++|.|+|+|.++|+++|..+++...+++.|+.+|.+++.+++..+.+.+..+..|+.++..++..+..|+..
T Consensus       108 CDgSDE~~Sgv~c~ntC~e~gR~~r~~~~~~~~~yk~G~e~R~~~i~e~k~~~~~~e~~l~~l~~e~~~l~~~~~~l~~~  187 (480)
T KOG2397|consen  108 CDGSDEYLSGVDCPNTCIELGRAARIMLEKDAEIYKPGKEIREELLDESKTAREAFEAPLDKLSDELKVLEGDGEQLRST  187 (480)
T ss_pred             ccCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcccccchhhhcchhhhhhHHhhccchHHHHHHH
Confidence            99999999989999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHhhhhcccCCC-CCCcccccccccccccchhhccccc
Q 006780          169 KEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAEENAYSD-DKPDDVRHDDKVGVLEEESFDQGKA  247 (631)
Q Consensus       169 k~~~e~~E~~~~~~~~k~~~~~~~~~~~~~~~~~~le~~l~~~~~~~npnfnde-~vk~~v~~~~~~~~le~d~~~~~~a  247 (631)
                      ++.++..++.+++.....++..+.+. ..+.         .   ....+.+++. ..+..+.....-..+          
T Consensus       188 ~e~~E~~~~~e~~~~~~~~~~~~~~~-~~~~---------~---~~~~~e~d~~~~~~~~~tel~~~~~~----------  244 (480)
T KOG2397|consen  188 KEKGEFDERKEKDQIQGQEELLKAAR-SRAQ---------A---DLVFDELDDDTNLLVELTELYTCTLL----------  244 (480)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHH-hhhc---------c---hhcCccccCcccccccccccccCccc----------
Confidence            99777777654444443333322110 0010         0   0111111111 111111100000000          


Q ss_pred             cCCCCCchhhhhhccccCCCCCCccCccchhhhHhhhhhcccCCCCCCCCCCCCcccccCCCchhhhhhhhhhccCCccc
Q 006780          248 ENVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSEN  327 (631)
Q Consensus       248 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (631)
                                                      +          .+.++++.                      ..++...
T Consensus       245 --------------------------------d----------~~~~~~i~----------------------~~E~k~~  260 (480)
T KOG2397|consen  245 --------------------------------D----------CDKDGKIL----------------------SFEIKRL  260 (480)
T ss_pred             --------------------------------c----------cccccccc----------------------HHHHHHh
Confidence                                            0          01111111                      1222334


Q ss_pred             cchhhhhhhhhhhcccCcCccccccCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCccccccccCCCCCCCCCCCC
Q 006780          328 TEELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDE  407 (631)
Q Consensus       328 l~~~~~~d~~~~~~~~w~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~e~~~~~~~~~  407 (631)
                      .+...+.++..|....|..++..+++.....      .++.+..              +++.+...+..+++. ..+..+
T Consensus       261 ~~~~~~~~~~~~~~~~~s~l~~l~~t~~~~~------~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~  319 (480)
T KOG2397|consen  261 KGELTQHDADSFRDTETSNLEHLYHTTPRPE------SPEQREE--------------EPTLRGVLNSPSEEP-RHDEED  319 (480)
T ss_pred             hccccccCccccccchhhhhHhhhccCCCcc------Ccccccc--------------cccccccccCCcccc-chhhhc
Confidence            5666678888899999999888776433210      0000000              000111111121110 001000


Q ss_pred             cccccCCCccccCCCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHhhccCCCCcChhhHHHHHHHHHHHHHHHHHHH
Q 006780          408 PYREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQ  487 (631)
Q Consensus       408 ~~e~~~~~~~~~~y~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~aR~~~~~ae~~l~~l~  487 (631)
                      .+    +++           ..+...+  ..+| +                        .+++.||+.|+++++.+++|+
T Consensus       320 ~~----~d~-----------~~~~~~~--~s~p-~------------------------~~a~~ar~~~de~~~~~k~l~  357 (480)
T KOG2397|consen  320 IN----SDD-----------EGDSGDT--DSPP-S------------------------LQASEARNELDEAERKLKDLD  357 (480)
T ss_pred             cc----CCc-----------ccccCCC--CCch-H------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            00    000           0000010  0122 1                        157899999999999999999


Q ss_pred             HHHHHHHHhhcccCCchhhhhhhccceEEeecCeEEEEEecCCceeeccCCceeEeecccccCCCeeEEEecCCccCCCC
Q 006780          488 SRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNG  567 (631)
Q Consensus       488 ~~i~~~e~~L~~d~G~~~~f~~L~~~C~~~~~g~Y~YelC~~~~v~Q~~g~~~~~LG~f~~~~~~~~~m~Y~~G~~CwNG  567 (631)
                      .+|+++++.++.||| ..+|++++|+||....|+|||+||||+.++|+    .+..|.|.+...  .+|.|+||++||||
T Consensus       358 ~~i~~l~~~~~~~~g-~~e~~~~~~~c~~~~~~~Y~Y~~c~~~~~tq~----~~~~~~w~~~e~--~~m~y~nG~~CWnG  430 (480)
T KOG2397|consen  358 EEIRELEDELNGDFG-LLEFAALKGQCFDRELGEYTYTVCPFKPVTQK----SIYGGSWSGPEG--SVMKYENGQQCWNG  430 (480)
T ss_pred             HHHHHHHHHhhcccc-HHHHHHHhcceeeeccCcEEEEEccccccccc----ccccccccCCcc--ceeeecCccccccC
Confidence            999999999999999 99999999999999999999999999999999    566677777654  79999999999999


Q ss_pred             CCCeeEEEEEeCCCCceeeecCCCccEEEEEEeccCCCCchhHH
Q 006780          568 PDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQ  611 (631)
Q Consensus       568 p~Rst~V~l~Cg~~~~i~sV~EpskC~Y~~~~~TPa~C~~~~~~  611 (631)
                      |+|||+|.+.||.+|+|++|+||+||+|.|+|.|||+|.++.++
T Consensus       431 P~RSa~v~v~Cg~e~~i~sv~Ep~kCeY~~~~~tPaaC~~~~~~  474 (480)
T KOG2397|consen  431 PNRSATVTVRCGLENEIVSVTEPSKCEYLFELVTPAACNEDFLK  474 (480)
T ss_pred             CCcceeEEEEecccceeeeccccccceeeeEecccccCCcchhh
Confidence            99999999999999999999999999999999999999998864

>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein Back     alignment and domain information
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like Back     alignment and domain information
>KOG3394 consensus Protein OS-9 [General function prediction only] Back     alignment and domain information
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like Back     alignment and domain information
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms] Back     alignment and domain information
>PF07915 PRKCSH: Glucosidase II beta subunit-like protein; InterPro: IPR012913 The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II (P14314 from SWISSPROT), which is also known as protein kinase C substrate 80K-H (PRKCSH) Back     alignment and domain information
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B Back     alignment and domain information
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure Back     alignment and domain information
>smart00192 LDLa Low-density lipoprotein receptor domain class A Back     alignment and domain information
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells Back     alignment and domain information
>PF00878 CIMR: Cation-independent mannose-6-phosphate receptor repeat; InterPro: IPR000479 The cation-independent mannose-6-phosphate receptor is a type I membrane protein responsible for transport of phosphorylated lysosomal enzymes from the golgi complex and the cell surface to lysosomes Back     alignment and domain information
>KOG4504 consensus Cation-independent mannose-6-phosphate receptor CI-MPR [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation [] Back     alignment and domain information
>KOG3394 consensus Protein OS-9 [General function prediction only] Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query631
3aih_A124 Protein OS-9; beta barrel, lectin, sugar binding p 9e-23
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-07
2l21_A154 Cation-independent mannose-6-phosphate receptor; g 1e-06
2kva_A148 Cation-independent mannose-6-phosphate receptor; t 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-05
2a6h_D 1524 DNA-directed RNA polymerase beta' chain; RNA polym 6e-05
1q25_A432 CI, cation-independent mannose 6-phosphate recepto 6e-05
2l2g_A151 IGF2R domain 11; insulin-like growth factor 2, man 9e-05
2v5o_A627 Cation-independent mannose-6-phosphate receptor; m 3e-04
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 5e-04
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA MAN; 2.10A {Homo sapiens} Length = 124 Back     alignment and structure
 Score = 93.3 bits (231), Expect = 9e-23
 Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 27/121 (22%)

Query: 512 GHCFESKQNKYVYKVCPYKKATQ------EEGHSTTRLGSWDKFEDS------------- 552
             C    ++ + Y+ C  +   Q      E       LG +    D              
Sbjct: 3   APCLLKTKDWWTYEFCYGRHIQQYHMEDSEIKGEVLYLGYYQSAFDWDDETAKASKQHRL 62

Query: 553 --YHIMLFSNGDKC-WNGPDRSMKVRLRCG-----LKNEVTDVDEPSRCEYVALLYTPAV 604
             YH   + NG KC  NG  R  +VR  C        + +  VDEP  C YV  + TP +
Sbjct: 63  KRYHSQTYGNGSKCDLNGRPREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRL 122

Query: 605 C 605
           C
Sbjct: 123 C 123
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic imprinting, insulin-like growth factor 2, mannose 6 receptor, protein evolution; NMR {Gallus gallus} Length = 154 Back     alignment and structure
>2kva_A Cation-independent mannose-6-phosphate receptor; transport, lysosome, sugar binding, glyco membrane, phosphoprotein, transmembrane, disulfide bond; NMR {Bos taurus} PDB: 2kvb_A Length = 148 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 Back     alignment and structure
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A* Length = 432 Back     alignment and structure
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate receptor, imprinting, protein evolution, signaling protein; NMR {Monodelphis domestica} Length = 151 Back     alignment and structure
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A* Length = 627 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query631
3aih_A124 Protein OS-9; beta barrel, lectin, sugar binding p 99.94
2rl8_A154 Cation-dependent mannose-6-phosphate receptor; P-t 99.61
2kva_A148 Cation-independent mannose-6-phosphate receptor; t 99.38
1gp0_A143 Cation-independent mannose-6-phosphate receptor; i 99.24
2lla_A140 Mannose-6-phosphate/insulin-like growth factor II; 98.69
2l21_A154 Cation-independent mannose-6-phosphate receptor; g 98.55
2l2g_A151 IGF2R domain 11; insulin-like growth factor 2, man 98.44
1q25_A432 CI, cation-independent mannose 6-phosphate recepto 98.16
2fcw_B80 LDL receptor, low-density lipoprotein receptor; pr 98.07
1jrf_A47 TVA LDL-A module, subgroup A ROUS sarcoma virus re 97.99
2fyj_A82 Low-density lipoprotein receptor-related protein 1 97.97
2kny_A80 LRP-1, linker, APO-E; lipoprotein receptor, ligand 97.82
2v5o_A 627 Cation-independent mannose-6-phosphate receptor; m 97.75
2jm4_A43 Relaxin receptor 1; LDL-A module, RXFP1 receptor, 97.66
1cr8_A42 Protein (LOW density lipoprotein receptor related 97.66
2i1p_A48 Low-density lipoprotein receptor-related protein 2 97.59
1q25_A 432 CI, cation-independent mannose 6-phosphate recepto 97.54
3dpr_E39 LDL-receptor class A 3; human rhinovirus, VLDL-rec 97.53
2v5o_A627 Cation-independent mannose-6-phosphate receptor; m 97.3
2knx_A50 Prolow-density lipoprotein receptor-related prote; 97.12
1j8e_A44 Low-density lipoprotein receptor-related protein 1 97.04
1ajj_A37 LR5, low-density lipoprotein receptor; LDL recepto 96.92
2fyj_A82 Low-density lipoprotein receptor-related protein 1 96.76
3a7q_B44 Low-density lipoprotein receptor-related protein; 96.75
1k7b_A47 Subgroup A ROUS sarcoma virus receptor PG800 and P 96.71
2fcw_B80 LDL receptor, low-density lipoprotein receptor; pr 96.5
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 96.4
1d2l_A45 Lipoprotein receptor related protein; ligand bindi 95.99
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 95.63
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 95.16
2m0p_A52 Low-density lipoprotein receptor-related protein; 95.01
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 93.09
2xrc_A565 Human complement factor I; immune system, hydrolas 92.84
2gtl_M217 Hemoglobin linker chain L1; annelid erythrocruorin 90.34
2gtl_N220 Extracellular hemoglobin linker L2 subunit; anneli 87.23
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 85.13
2gtl_O215 Extracellular hemoglobin linker L3 subunit; anneli 81.26
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA MAN; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=2.7e-27  Score=216.88  Aligned_cols=96  Identities=29%  Similarity=0.618  Sum_probs=87.2

Q ss_pred             ccceEEeecCeEEEEEecCCceeecc------CCceeEeecccc---cC------------CCeeEEEecCCccC-CCCC
Q 006780          511 YGHCFESKQNKYVYKVCPYKKATQEE------GHSTTRLGSWDK---FE------------DSYHIMLFSNGDKC-WNGP  568 (631)
Q Consensus       511 ~~~C~~~~~g~Y~YelC~~~~v~Q~~------g~~~~~LG~f~~---~~------------~~~~~m~Y~~G~~C-wNGp  568 (631)
                      .+.|+....|||+|+|||++.|+|+|      ++..++||+|.+   |.            ..|++|.|++|+.| ||||
T Consensus         2 ~~~C~~~~~g~wtYe~C~~k~v~Q~h~~~~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~G~~Cd~~g~   81 (124)
T 3aih_A            2 SAPCLLKTKDWWTYEFCYGRHIQQYHMEDSEIKGEVLYLGYYQSAFDWDDETAKASKQHRLKRYHSQTYGNGSKCDLNGR   81 (124)
T ss_dssp             --CCEEEEETTEEEEEETTTEEEEECEETTEECSCCEEEEEEEEEEEEEC-----------CEEEEEEEECCSBCTTTSC
T ss_pred             CCcceEcCCCEEEEEECCCCeEEEecccCCCCCCCEEECccccccccccccccccccccccceeEEEEcCCCCccCCCCC
Confidence            46899999999999999999999997      234688999998   85            25899999999999 9999


Q ss_pred             CCeeEEEEEeCC-----CCceeeecCCCccEEEEEEeccCCCC
Q 006780          569 DRSMKVRLRCGL-----KNEVTDVDEPSRCEYVALLYTPAVCS  606 (631)
Q Consensus       569 ~Rst~V~l~Cg~-----~~~i~sV~EpskC~Y~~~~~TPa~C~  606 (631)
                      +|+|+|+|.|++     .+.|++|.||++|+|.|+|.||++|.
T Consensus        82 ~Rst~V~~~C~~~~~~~~~~i~~v~E~~~C~Y~~~v~tP~~C~  124 (124)
T 3aih_A           82 PREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRLCP  124 (124)
T ss_dssp             BCEEEEEEEECTTCCSSCCEEEEEEEEETTEEEEEEEEGGGCC
T ss_pred             CcEEEEEEEeCCCCCCCccEEEEEcCCCceEEEEEEEecccCC
Confidence            999999999998     68999999999999999999999995
>2rl8_A Cation-dependent mannose-6-phosphate receptor; P-type lectin, lectin, glycop lysosome, membrane, transmembrane, transport; HET: NAG M6D; 1.45A {Bos taurus} SCOP: b.64.1.1 PDB: 1keo_A* 2rl7_A* 2rl6_A* 2rl9_A* 2rlb_A* 3cy4_A* 3k41_A* 3k43_A* 3k42_A* 1m6p_A* 1c39_A* Back     alignment and structure
>2kva_A Cation-independent mannose-6-phosphate receptor; transport, lysosome, sugar binding, glyco membrane, phosphoprotein, transmembrane, disulfide bond; NMR {Bos taurus} PDB: 2kvb_A Back     alignment and structure
>1gp0_A Cation-independent mannose-6-phosphate receptor; insulin-like growth factor, transport, beta barrel; 1.4A {Homo sapiens} SCOP: b.64.1.1 PDB: 1e6f_A 1gp3_A 1gqb_A 2cnj_D 2l29_A 2l2a_A Back     alignment and structure
>2lla_A Mannose-6-phosphate/insulin-like growth factor II; monotreme, IGF-II, domain 11, transport; NMR {Tachyglossus aculeatus} Back     alignment and structure
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic imprinting, insulin-like growth factor 2, mannose 6 receptor, protein evolution; NMR {Gallus gallus} Back     alignment and structure
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate receptor, imprinting, protein evolution, signaling protein; NMR {Monodelphis domestica} Back     alignment and structure
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A* Back     alignment and structure
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Back     alignment and structure
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Back     alignment and structure
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Back     alignment and structure
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Back     alignment and structure
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A* Back     alignment and structure
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Back     alignment and structure
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A* Back     alignment and structure
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Back     alignment and structure
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A* Back     alignment and structure
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Back     alignment and structure
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Back     alignment and structure
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Back     alignment and structure
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Back     alignment and structure
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 631
d2rl8a1151 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phos 2e-08
d1q25a3152 b.64.1.1 (A:281-432) Cation-independent mannose-6- 6e-08
d1q25a1123 b.64.1.1 (A:7-129) Cation-independent mannose-6-ph 5e-06
d1gp0a_133 b.64.1.1 (A:) Cation-independent mannose-6-phospha 8e-06
d1v9u5_39 g.12.1.1 (5:) Very low-density lipoprotein recepto 0.003
d1j8ea_44 g.12.1.1 (A:) Ligand-binding domain of low-density 0.004
>d2rl8a1 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain {Cow (Bos taurus) [TaxId: 9913]} Length = 151 Back     information, alignment and structure

class: All beta proteins
fold: Mannose 6-phosphate receptor domain
superfamily: Mannose 6-phosphate receptor domain
family: Mannose 6-phosphate receptor domain
domain: Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 29/146 (19%)

Query: 490 ISSLTQKLKHEFGPEKEFYSFYGHCFESK----QNKYVYKVCPYKKATQEE--------- 536
           +    ++ + E    K     +   FES      + Y Y     ++A Q           
Sbjct: 6   VGEKGKESEKELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQ 65

Query: 537 --GHSTTRLGSWDK----FEDSYHIMLFSNGDKCWN---GPDRSMKVRLRC-------GL 580
                 T +G +++       ++ ++++  GD+  N      R   V + C         
Sbjct: 66  KSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNF 125

Query: 581 KNEVTDVDEPSRCEYVALLYTPAVCS 606
                +  +   C Y+  + +   CS
Sbjct: 126 NPVSEERGKVQDCFYLFEMDSSLACS 151
>d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Length = 152 Back     information, alignment and structure
>d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Length = 123 Back     information, alignment and structure
>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 Back     information, alignment and structure
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query631
d2rl8a1151 Cation-dependent mannose 6-phosphate receptor, ext 98.99
d1q25a3152 Cation-independent mannose-6-phosphate receptor (M 98.84
d1gp0a_133 Cation-independent mannose-6-phosphate receptor (M 98.75
d1q25a2151 Cation-independent mannose-6-phosphate receptor (M 98.38
d1q25a1123 Cation-independent mannose-6-phosphate receptor (M 98.21
d1d2la_45 Ligand-binding domain of low-density lipoprotein r 97.19
d2fcwb139 Ligand-binding domain of low-density lipoprotein r 97.17
d1v9u5_39 Very low-density lipoprotein receptor {Human (Homo 97.13
d1ajja_37 Ligand-binding domain of low-density lipoprotein r 97.09
d1f8za_39 Ligand-binding domain of low-density lipoprotein r 97.03
d1j8ea_44 Ligand-binding domain of low-density lipoprotein r 97.02
d1xfea244 Ligand-binding domain of low-density lipoprotein r 96.88
d1f5ya144 Ligand-binding domain of low-density lipoprotein r 96.82
d1cr8a_42 Ligand-binding domain of low-density lipoprotein r 96.67
d2gtlm242 Hemoglobin linker chain l1 {Common earthworm (Lumb 96.65
d2fcwb239 Ligand-binding domain of low-density lipoprotein r 96.54
d1f5ya241 Ligand-binding domain of low-density lipoprotein r 96.44
d2gtln241 Extracellular hemoglobin linker l2 subunit {Common 96.16
d2gtlo241 Extracellular hemoglobin linker l3 subunit {Common 96.16
d1k7ba_42 soluble Tva ectodomain, sTva47 {Quail (Coturnix co 96.08
>d2rl8a1 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: Mannose 6-phosphate receptor domain
superfamily: Mannose 6-phosphate receptor domain
family: Mannose 6-phosphate receptor domain
domain: Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=4e-10  Score=103.61  Aligned_cols=107  Identities=20%  Similarity=0.367  Sum_probs=80.4

Q ss_pred             cCCchhhhhhhccceEEeec----CeEEEEEecCCcee---------ecc--CCceeEeeccccc----CCCeeEEEecC
Q 006780          500 EFGPEKEFYSFYGHCFESKQ----NKYVYKVCPYKKAT---------QEE--GHSTTRLGSWDKF----EDSYHIMLFSN  560 (631)
Q Consensus       500 d~G~~~~f~~L~~~C~~~~~----g~Y~YelC~~~~v~---------Q~~--g~~~~~LG~f~~~----~~~~~~m~Y~~  560 (631)
                      ++|-...|.||.+.++....    ..|+|.|..-+.+.         |..  ++..++||.+...    .++.+.|.|.+
T Consensus        16 ~~~~~~~LspL~n~~~~~~v~~~~~~y~y~inVC~~~~~~~~~a~~Cq~~~~~~~~~~lG~~~~~~~~~~~~~l~L~Y~~   95 (151)
T d2rl8a1          16 ELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKG   95 (151)
T ss_dssp             HHHHHHHTGGGTTCCEECCCC---CCEEEEECSSSCCSSSSSCEEEEEEETTTCCEEEEEEEEEEEEEECSSEEEEEEEE
T ss_pred             hhhhhhhcCccccCCcceEECcCCccEEEEEEeCCCCCCCCCCceEEEEecCCCeEEEeeeeccccEEccCCeEEEEECC
Confidence            45556779999999998864    33777654433333         332  4567899998863    45778999999


Q ss_pred             CccCCC---CCCCeeEEEEEeCCCCc-----e--eeecCCCccEEEEEEeccCCCC
Q 006780          561 GDKCWN---GPDRSMKVRLRCGLKNE-----V--TDVDEPSRCEYVALLYTPAVCS  606 (631)
Q Consensus       561 G~~CwN---Gp~Rst~V~l~Cg~~~~-----i--~sV~EpskC~Y~~~~~TPa~C~  606 (631)
                      |+.|++   |..|+|.|.|.|.+...     +  ..+.+...|.|.|++.||+||.
T Consensus        96 G~~C~~~~~~~~rst~I~F~Cd~~~~~~~~~~~~e~~~~~~~C~Y~F~w~T~~ACs  151 (151)
T d2rl8a1          96 GDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS  151 (151)
T ss_dssp             CCBCSSSGGGCBCCEEEEEEECTTCSSEEEEEEEEECCSSSCCEEEEEEEEGGGCC
T ss_pred             CCccCCCCCCceeEEEEEEEeCCCCcCCCceeeeecccCCCceEEEEEEeehhccC
Confidence            999986   57899999999987431     2  2456788999999999999994
>d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q25a2 b.64.1.1 (A:130-280) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Back     information, alignment and structure
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Back     information, alignment and structure