Citrus Sinensis ID: 006794

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-
MPALVNYRDDLFSIGSHVDAYCPPRKRARLSAQFASGETEFEFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDILS
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHccccccccEEEEccccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHcccccEEEEEccccccccHHHHHHHcccccccEEEccccccccHHHHHHHHHccccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHcccccccEEEccccccccccccccccccccccccEEEEcccccccHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccccc
ccEEEEcccccEcccccccEEccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHcHHHHHcccccHHHHHcccccccccccHHHHHHHHHHcccHHHEEcccccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEcccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccHHHEHHHccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccccEEEccccccccHHHHHHHHHcccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHcccccccEEEEcccHHccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEcc
mpalvnyrddlfsigshvdaycpprkraRLSAQfasgetefefenqpsidvlpdeCLYEIFRrlpsgkersfAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVemvscdedgdgyltrcldgkkatDLRLAAIAVgtsghgglgklsirgnkythgvtnfglsaiargcpslkslslwnvpsvgdeGLLEIAKECHLLeklelchcpsisnESLIAIAencpnltslniESCSKIGNDGLQAIGKFCRnlqclsikdcplvrdQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLvlsdlpnvsekgfwVMGNAQGLQKLVSLTIasgggvtdvsLEAMgkgclnlkqmclrkccfvsdnglVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIkdmatempmlspncslrslsirncpgfgnASLAMLGKlcpqlqhvdlsglygitdvgifplLESCKAGLVKVnlsgclnlTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLsscsevsnksmPALKKLGKTLVGlnlqncnsinSSTVARLVESLWRCDILS
MPALVNyrddlfsigshvdaycPPRKRARLSAQFASGETefefenqpsidvLPDECLYEIFrrlpsgkersFAACVSKKWLMMLTSIRKaeickseklEKEVVASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIavgtsghgglgkLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVvsnsasklkslTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDILS
MPALVNYRDDLFSIGSHVDAYCPPRKRARLSAQFASGETEFEFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAkechlleklelchcPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGIssllssassvlTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDILS
****VNYRDDLFSIGSHVDAYCPP****************FEFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSC*********ALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDI**
***********************************************SIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDILS
MPALVNYRDDLFSIGSHVDAYCPPRKRARLSAQFASGETEFEFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDILS
MPALVNYRDDLFSIGSHVDAYCPPRKRARLSAQFASGETEFEFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDILS
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MPALVNYRDDLFSIGSHVDAYCPPRKRARLSAQFASGETEFEFENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDILS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query631 2.2.26 [Sep-21-2011]
Q9SKK0628 EIN3-binding F-box protei yes no 0.947 0.952 0.565 0.0
Q708Y0623 EIN3-binding F-box protei no no 0.949 0.961 0.556 0.0
Q9C5D2610 F-box/LRR-repeat protein no no 0.825 0.854 0.273 5e-40
Q9CZV8436 F-box/LRR-repeat protein yes no 0.597 0.864 0.271 7e-27
Q96IG2436 F-box/LRR-repeat protein yes no 0.597 0.864 0.269 2e-26
Q58DG6436 F-box/LRR-repeat protein yes no 0.597 0.864 0.269 2e-26
Q9UKC9423 F-box/LRR-repeat protein no no 0.587 0.877 0.274 5e-26
Q5R3Z8423 F-box/LRR-repeat protein yes no 0.587 0.877 0.274 5e-26
P34284466 Uncharacterized F-box/LRR yes no 0.483 0.654 0.260 1e-25
Q8BH16423 F-box/LRR-repeat protein no no 0.589 0.879 0.263 7e-25
>sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1 Back     alignment and function desciption
 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/623 (56%), Positives = 460/623 (73%), Gaps = 25/623 (4%)

Query: 11  LFSIGSHVDAYCPPRKRARLSAQFASGETEFE-FENQP-SIDVLPDECLYEIFRRLPSGK 68
           L S+GS  D Y PP KR+R+ A      T F  FE +P SIDVLPDECL+EIFRRL   +
Sbjct: 29  LLSLGSFADVYFPPSKRSRVVA-----PTIFSAFEKKPVSIDVLPDECLFEIFRRLSGPQ 83

Query: 69  ERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLD 128
           ERS  A VSK+WL +++SIR+ EI    K+ ++               +D +G L+R LD
Sbjct: 84  ERSACAFVSKQWLTLVSSIRQKEIDVPSKITED--------------GDDCEGCLSRSLD 129

Query: 129 GKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGCPSLKSLSLWNVP 188
           GKKATD+RLAAIAVGT+G GGLGKLSIRG+     V++ GL +I R CPSL SLSLWNV 
Sbjct: 130 GKKATDVRLAAIAVGTAGRGGLGKLSIRGSNSAK-VSDLGLRSIGRSCPSLGSLSLWNVS 188

Query: 189 SVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQ 248
           ++ D GLLEIA+ C  LEKLEL  C +I+++ L+AIA++CPNLT L +E+CS+IG++GL 
Sbjct: 189 TITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGLL 248

Query: 249 AIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKA 308
           AI + C  L+ +SIK+CPLVRDQGI+SLLS+ +  L ++KLQ LN+TD SLAV+GHYG +
Sbjct: 249 AIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKLQMLNVTDVSLAVVGHYGLS 308

Query: 309 LTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCL 368
           +T+LVL+ L +VSEKGFWVMGN  GLQKL SLTI +  GVTD+ LE++GKGC N+K+  +
Sbjct: 309 ITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITACQGVTDMGLESVGKGCPNMKKAII 368

Query: 369 RKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIK 428
            K   +SDNGLV+F+KA+ SLE LQLEEC+RV+Q G  G + N   KLK+ +LV C+ I+
Sbjct: 369 SKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQFGFFGSLLNCGEKLKAFSLVNCLSIR 428

Query: 429 DMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPL 488
           D+ T +P  S   +LRSLSIRNCPGFG+A+LA +GKLCPQL+ +DL GL GIT+ G   L
Sbjct: 429 DLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQLEDIDLCGLKGITESGFLHL 488

Query: 489 LESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMF 548
           ++S    LVK+N SGC NLTD V+ A+   +  TLE+LN+DGC  ITDASLV+I  NC  
Sbjct: 489 IQS---SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQI 545

Query: 549 LSYLDVSKCAITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQN 608
           LS LD+SKCAI+D GI AL+ +++L LQ+LS++ CS V++KS+PA+  LG TL+GLNLQ 
Sbjct: 546 LSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQ 605

Query: 609 CNSINSSTVARLVESLWRCDILS 631
           C SI++STV  LVE L++CDILS
Sbjct: 606 CRSISNSTVDFLVERLYKCDILS 628
Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. Confers insensitivity to ethylene.
Arabidopsis thaliana (taxid: 3702)
>sp|Q708Y0|EBF2_ARATH EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 Back     alignment and function description
>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 Back     alignment and function description
>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 Back     alignment and function description
>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 Back     alignment and function description
>sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 Back     alignment and function description
>sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 Back     alignment and function description
>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3 Back     alignment and function description
>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query631
255567047648 grr1, plant, putative [Ricinus communis] 0.990 0.964 0.724 0.0
224090409656 ein3-binding f-box protein 4 [Populus tr 1.0 0.961 0.734 0.0
224144210632 f-box family protein [Populus trichocarp 0.973 0.971 0.738 0.0
225445527661 PREDICTED: EIN3-binding F-box protein 1- 0.998 0.953 0.696 0.0
147846507669 hypothetical protein VITISV_043743 [Viti 0.982 0.926 0.712 0.0
449443075661 PREDICTED: EIN3-binding F-box protein 1- 0.996 0.951 0.670 0.0
356548573639 PREDICTED: EIN3-binding F-box protein 1- 0.976 0.964 0.665 0.0
356563009639 PREDICTED: EIN3-binding F-box protein 1- 0.982 0.970 0.66 0.0
356508335650 PREDICTED: EIN3-binding F-box protein 1- 0.993 0.964 0.669 0.0
350538507637 EIN3-binding F-box protein 1 [Solanum ly 0.979 0.970 0.666 0.0
>gi|255567047|ref|XP_002524506.1| grr1, plant, putative [Ricinus communis] gi|223536294|gb|EEF37946.1| grr1, plant, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/654 (72%), Positives = 550/654 (84%), Gaps = 29/654 (4%)

Query: 1   MPALVNYRDD------------------LFSIGSHVDAYCPPRKRARLSAQFASGETEFE 42
           MPALVNY  D                   +SIGSHVDAY PP KRAR+S+ F  G +EFE
Sbjct: 1   MPALVNYSGDDEFYSGGSLCANPMDLGRYYSIGSHVDAYSPPCKRARISSPFLFGSSEFE 60

Query: 43  FENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEV 102
              QPSIDVLPDECL+EIFRR+P GKERS  ACVSK+WL +L+SIR+AE+C      + +
Sbjct: 61  QNKQPSIDVLPDECLFEIFRRIPGGKERSACACVSKRWLTLLSSIRRAELCN-----ERI 115

Query: 103 VASVSDHVEMVS-CDEDG----DGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRG 157
           V   +D VEM S CDE+G    DGYLTR L+GKKATD+RLAAIAVGTSGHGGLGKL IRG
Sbjct: 116 VPGCND-VEMASSCDENGEIESDGYLTRSLEGKKATDMRLAAIAVGTSGHGGLGKLLIRG 174

Query: 158 NKYTHGVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSIS 217
           +    GVTN GL AIARGCPSL+SLSLW+VPSV DEGL E+AKECHLLEKL+LC+CPSI+
Sbjct: 175 SNSIRGVTNLGLMAIARGCPSLRSLSLWDVPSVADEGLFEVAKECHLLEKLDLCNCPSIT 234

Query: 218 NESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLL 277
           N+ LIAIAENC NL SLNIESC KIGN+G+QAIGKFC  LQ +SIKDC LV D G+SSLL
Sbjct: 235 NKGLIAIAENCSNLISLNIESCPKIGNEGIQAIGKFCNKLQSISIKDCRLVGDHGVSSLL 294

Query: 278 SSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKL 337
           SSA++VL++VKLQALN+TDFSLAVIGHYGK +TNLVLS+L +VSEKGFWVMGNAQGLQKL
Sbjct: 295 SSATNVLSKVKLQALNVTDFSLAVIGHYGKVVTNLVLSNLQHVSEKGFWVMGNAQGLQKL 354

Query: 338 VSLTIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEEC 397
           +SLTI+S  G+TDVS+EA+ KGC NLKQMCLRKCCFVSDNGLV+F++AAGSLE LQLEEC
Sbjct: 355 MSLTISSCRGITDVSIEAIAKGCTNLKQMCLRKCCFVSDNGLVSFARAAGSLESLQLEEC 414

Query: 398 NRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSIRNCPGFGNA 457
           NRV+QSGI+G +SN  +KLK+L+LVKCMGI+D+A++M + SP  SLRSLSIRNCPGFG+A
Sbjct: 415 NRVTQSGIVGAISNCGTKLKALSLVKCMGIRDVASQMVVSSPCSSLRSLSIRNCPGFGSA 474

Query: 458 SLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALAR 517
           SLA++GKLCPQLQHVDLSGL  ITD G+ PLLES +AGLVKVNLSGC+NLTDEV+ ALAR
Sbjct: 475 SLALVGKLCPQLQHVDLSGLCAITDSGLLPLLESSEAGLVKVNLSGCMNLTDEVISALAR 534

Query: 518 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQV 577
           +H  +LELLNLDGCRKITDASL AI +NC+FLS LDVSKCA+TD GI+ LS A++LNLQV
Sbjct: 535 IHGGSLELLNLDGCRKITDASLKAITHNCLFLSDLDVSKCAVTDSGIATLSSADRLNLQV 594

Query: 578 LSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDILS 631
           LSLS CSEVSNKS P LKKLG+TL+GLNLQNC+SI+S+TV  LVESLWRCDILS
Sbjct: 595 LSLSGCSEVSNKSFPFLKKLGRTLMGLNLQNCSSISSNTVELLVESLWRCDILS 648

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224090409|ref|XP_002308982.1| ein3-binding f-box protein 4 [Populus trichocarpa] gi|222854958|gb|EEE92505.1| ein3-binding f-box protein 4 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224144210|ref|XP_002325221.1| f-box family protein [Populus trichocarpa] gi|222866655|gb|EEF03786.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225445527|ref|XP_002285249.1| PREDICTED: EIN3-binding F-box protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147846507|emb|CAN83761.1| hypothetical protein VITISV_043743 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443075|ref|XP_004139306.1| PREDICTED: EIN3-binding F-box protein 1-like [Cucumis sativus] gi|449525455|ref|XP_004169733.1| PREDICTED: EIN3-binding F-box protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548573|ref|XP_003542675.1| PREDICTED: EIN3-binding F-box protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356563009|ref|XP_003549759.1| PREDICTED: EIN3-binding F-box protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356508335|ref|XP_003522913.1| PREDICTED: EIN3-binding F-box protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|350538507|ref|NP_001234858.1| EIN3-binding F-box protein 1 [Solanum lycopersicum] gi|82734614|gb|ABB89717.1| EIN3-binding F-box protein 1 [Solanum lycopersicum] gi|83584402|gb|ABC24971.1| EIN3-binding F-box protein 1 [Solanum lycopersicum] gi|240017777|gb|ACS44350.1| EIN3-binding F-box protein 2 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query631
TAIR|locus:2145512623 EBF2 "EIN3-binding F box prote 0.904 0.916 0.550 1.6e-164
TAIR|locus:2040105628 EBF1 "AT2G25490" [Arabidopsis 0.903 0.907 0.553 1.5e-163
TAIR|locus:505006471610 AT4G15475 "AT4G15475" [Arabido 0.885 0.916 0.258 1.8e-39
TAIR|locus:2166978405 AT5G23340 [Arabidopsis thalian 0.489 0.762 0.277 3.8e-29
TAIR|locus:2149805665 AT5G01720 "AT5G01720" [Arabido 0.746 0.708 0.264 2.9e-27
TAIR|locus:2143320642 AT5G27920 "AT5G27920" [Arabido 0.887 0.872 0.250 9.7e-26
UNIPROTKB|Q9UKC9423 FBXL2 "F-box/LRR-repeat protei 0.586 0.874 0.263 1.9e-23
UNIPROTKB|Q5R3Z8423 FBXL2 "F-box/LRR-repeat protei 0.586 0.874 0.263 1.9e-23
UNIPROTKB|F1PWK1422 FBXL2 "Uncharacterized protein 0.587 0.879 0.258 2.4e-23
MGI|MGI:1919444436 Fbxl20 "F-box and leucine-rich 0.610 0.883 0.262 6.5e-23
TAIR|locus:2145512 EBF2 "EIN3-binding F box protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
 Identities = 324/589 (55%), Positives = 419/589 (71%)

Query:    44 ENQPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVV 103
             E Q SIDVLP+ECL+EI RRLPSG+ERS  ACVSK WL +L+SI ++E+ +S        
Sbjct:    50 EKQTSIDVLPEECLFEILRRLPSGQERSACACVSKHWLNLLSSISRSEVNES-------- 101

Query:   104 ASVSDHVEMVSCDEDGDGYLTRCLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHG 163
              SV D        E+G+G+L+R L+GKKATDLRLAAIAVGTS  GGLGKL IRG+ +   
Sbjct:   102 -SVQDV-------EEGEGFLSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESK 153

Query:   164 VTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAXXXXXXXXXXXXXXPSISNESLIA 223
             VT+ GL A+A GCPSL+ +SLWN+P+V D GL EIA              P I++  L+A
Sbjct:   154 VTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVA 213

Query:   224 IAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGIXXXXXXXXXX 283
             IAENC NL+ L I+SCS +GN+GL+AI + C NL+ +SI+ CP + DQG+          
Sbjct:   214 IAENCVNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQAGSY 273

Query:   284 XTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIA 343
              T+VKLQ LN++  SLAVIGHYG A+T+LVL  L  V+EKGFWVMGNA+GL+KL SL++ 
Sbjct:   274 LTKVKLQMLNVSGLSLAVIGHYGAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKLKSLSVM 333

Query:   344 SGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQS 403
             S  G+TDV LEA+G GC +LK + L KC  VS  GLVA +K+A SLE L+LEEC+R++Q 
Sbjct:   334 SCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLVALAKSALSLESLKLEECHRINQF 393

Query:   404 GILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCS-LRSLSIRNCPGFGNASLAML 462
             G++G + N  SKLK+ +L  C+GI D  +E  + SP+CS LRSLSIR CPGFG+ASLA L
Sbjct:   394 GLMGFLMNCGSKLKAFSLANCLGISDFNSESSLPSPSCSSLRSLSIRCCPGFGDASLAFL 453

Query:   463 GKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSET 522
             GK C QLQ V+L GL G+TD G+  LL+S   GLVKVNLS C+N++D  V A++  H  T
Sbjct:   454 GKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRT 513

Query:   523 LELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISAL-SHAEQLNLQVLSLS 581
             LE LNLDGC+ IT+ASLVA+  NC  ++ LD+S   ++D GI AL S    LNLQVLS+ 
Sbjct:   514 LESLNLDGCKNITNASLVAVAKNCYSVNDLDISNTLVSDHGIKALASSPNHLNLQVLSIG 573

Query:   582 SCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCDIL 630
              CS +++KS   ++KLG+TL+GLN+Q C  I+SSTV  L+E+LWRCDIL
Sbjct:   574 GCSSITDKSKACIQKLGRTLLGLNIQRCGRISSSTVDTLLENLWRCDIL 622
GO:0005634 "nucleus" evidence=ISM;IDA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS
GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA
TAIR|locus:2040105 EBF1 "AT2G25490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SKK0EBF1_ARATHNo assigned EC number0.56500.94770.9522yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
EBF4
ein3-binding f-box protein 4 (657 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query631
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 8e-21
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 3e-14
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 2e-10
cd00116319 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo 3e-04
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 0.004
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information 
 Score = 91.2 bits (227), Expect = 8e-21
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 13/177 (7%)

Query: 443 LRSLSIRNCPGFGNASLAMLGKL--CPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVN 500
           L  L +  CP     S   L +L  C +L+ + L G   I D G+  L +SC   L  ++
Sbjct: 30  LEWLELYMCP----ISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSC-PNLQVLD 84

Query: 501 LSGCLNLTDEVVLALARLHSETLELLNL---DGCRKITDASLVAIGNNCMFLSYLDVSKC 557
           L  C N+TD  ++ALA  +   L+ +NL        ITD SL A+G NC FL  +  + C
Sbjct: 85  LRACENITDSGIVALA-TNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC 143

Query: 558 AITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPAL--KKLGKTLVGLNLQNCNSI 612
            +TD G+  L+     +L+ LSL++C  ++++S+PA+        L  L  + C  I
Sbjct: 144 DVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLI 200

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 631
KOG4341483 consensus F-box protein containing LRR [General fu 100.0
KOG4341483 consensus F-box protein containing LRR [General fu 99.95
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.91
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.82
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.81
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.76
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.63
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.62
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.6
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.6
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.6
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.53
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.5
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.43
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.41
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.32
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 99.31
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.24
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 99.18
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 99.16
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 98.99
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.99
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 98.94
KOG0472565 consensus Leucine-rich repeat protein [Function un 98.71
KOG4237498 consensus Extracellular matrix protein slit, conta 98.7
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 98.67
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 98.64
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.58
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 98.55
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 98.54
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 98.44
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.43
KOG3864221 consensus Uncharacterized conserved protein [Funct 98.35
KOG2982 418 consensus Uncharacterized conserved protein [Funct 98.27
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.24
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 98.19
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 98.18
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.12
KOG2982418 consensus Uncharacterized conserved protein [Funct 98.06
KOG1259490 consensus Nischarin, modulator of integrin alpha5 97.98
KOG3864221 consensus Uncharacterized conserved protein [Funct 97.93
KOG4237 498 consensus Extracellular matrix protein slit, conta 97.91
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 97.86
KOG0472565 consensus Leucine-rich repeat protein [Function un 97.81
KOG1259490 consensus Nischarin, modulator of integrin alpha5 97.61
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 97.57
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 97.49
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 97.39
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 96.98
PRK15386 426 type III secretion protein GogB; Provisional 96.95
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 96.94
PRK15386 426 type III secretion protein GogB; Provisional 96.94
PLN03150623 hypothetical protein; Provisional 96.86
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 96.76
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 96.66
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 96.66
KOG2123 388 consensus Uncharacterized conserved protein [Funct 96.6
KOG4308 478 consensus LRR-containing protein [Function unknown 96.37
KOG4308 478 consensus LRR-containing protein [Function unknown 96.33
KOG0617264 consensus Ras suppressor protein (contains leucine 96.29
KOG0281499 consensus Beta-TrCP (transducin repeats containing 96.26
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 96.25
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 96.22
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 96.13
KOG2997366 consensus F-box protein FBX9 [General function pre 95.63
PLN03150623 hypothetical protein; Provisional 95.5
KOG2123388 consensus Uncharacterized conserved protein [Funct 95.46
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 95.35
KOG0617264 consensus Ras suppressor protein (contains leucine 95.34
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 95.3
PF13013109 F-box-like_2: F-box-like domain 95.21
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 94.83
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 94.79
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 94.34
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 94.15
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 93.54
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 92.97
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 92.54
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 90.46
smart0036828 LRR_RI Leucine rich repeat, ribonuclease inhibitor 89.85
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 89.14
smart0036828 LRR_RI Leucine rich repeat, ribonuclease inhibitor 89.1
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 86.56
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 86.34
KOG0531 414 consensus Protein phosphatase 1, regulatory subuni 84.64
PF0937297 PRANC: PRANC domain; InterPro: IPR018272 This pres 81.02
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-34  Score=262.80  Aligned_cols=395  Identities=27%  Similarity=0.417  Sum_probs=223.9

Q ss_pred             CCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhhhhhhhhccchhhHHHhhhcccccccccccCCCCCCccceeccC
Q 006794           50 DVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTRCLDG  129 (631)
Q Consensus        50 ~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  129 (631)
                      -.||+|++.+||++|+ .+.+.+++.+|+-|...+.-                   ...|.++.....      ++..++
T Consensus        73 ~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD-------------------~~~~q~idL~t~------~rDv~g  126 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALD-------------------GSCWQHIDLFTF------QRDVDG  126 (483)
T ss_pred             ccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhc-------------------cccceeeehhcc------hhcCCC
Confidence            3799999999999999 99999999999999997621                   255654441100      011111


Q ss_pred             CCccchhhHHHhhcccCCCCcceeEeeCccccCccChhhHHHHHhcC-CCCCeEeecCCCCCChhhHHHHHHhCCCCCEe
Q 006794          130 KKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHGVTNFGLSAIARGC-PSLKSLSLWNVPSVGDEGLLEIAKECHLLEKL  208 (631)
Q Consensus       130 ~~~~~~~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  208 (631)
                      .                                     .+..+.+.| ..|++|.+.+|....+..+..+...||++++|
T Consensus       127 ~-------------------------------------VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL  169 (483)
T KOG4341|consen  127 G-------------------------------------VVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHL  169 (483)
T ss_pred             c-------------------------------------ceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhh
Confidence            1                                     111222222 36677777777666666777777777777777


Q ss_pred             eccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCChhHHHHHhhcCCCCcEEEccCCCCcchhhHHHHHhhhhhccccee
Q 006794          209 ELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSASSVLTRVK  288 (631)
Q Consensus       209 ~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~  288 (631)
                      .+.+|..+++..+..+...|++|++|.+..|..+++..++.+++.|++|++|+++-|+.+...++..+.++         
T Consensus       170 ~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG---------  240 (483)
T KOG4341|consen  170 ALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG---------  240 (483)
T ss_pred             hhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc---------
Confidence            77777777777777777777777777777777777766666666666666666666655444333332222         


Q ss_pred             ccccccchhhHHHHhhccccccccccCCCCCCchhhHHHhhccccCCCcceEeccCCCCCChHHHHHHhhcCCCcCeEEc
Q 006794          289 LQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSLTIASGGGVTDVSLEAMGKGCLNLKQMCL  368 (631)
Q Consensus       289 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l  368 (631)
                                                                   +..++.+...+|.....+.+......++-+.++++
T Consensus       241 ---------------------------------------------~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  241 ---------------------------------------------CKELEKLSLKGCLELELEALLKAAAYCLEILKLNL  275 (483)
T ss_pred             ---------------------------------------------chhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence                                                         12222232333433444444444444444444444


Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCCccccccccCCCCCCCceEec
Q 006794          369 RKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATEMPMLSPNCSLRSLSI  448 (631)
Q Consensus       369 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  448 (631)
                      ..|..++|.++..+...+..|+.                                                      |..
T Consensus       276 ~~c~~lTD~~~~~i~~~c~~lq~------------------------------------------------------l~~  301 (483)
T KOG4341|consen  276 QHCNQLTDEDLWLIACGCHALQV------------------------------------------------------LCY  301 (483)
T ss_pred             hhhccccchHHHHHhhhhhHhhh------------------------------------------------------hcc
Confidence            44444444444444433333443                                                      444


Q ss_pred             cCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCCCCCchHHHHHHHhhcCcccCeecc
Q 006794          449 RNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGCLNLTDEVVLALARLHSETLELLNL  528 (631)
Q Consensus       449 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l  528 (631)
                      ++|..+++..+..+++++++|+.|.+.+|..+++.++..+...|+ .|+.+++.+|..+.+..+..++. +++.||.|.+
T Consensus       302 s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~-~Le~l~~e~~~~~~d~tL~sls~-~C~~lr~lsl  379 (483)
T KOG4341|consen  302 SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP-HLERLDLEECGLITDGTLASLSR-NCPRLRVLSL  379 (483)
T ss_pred             cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh-hhhhhcccccceehhhhHhhhcc-CCchhccCCh
Confidence            444445555556666666666666666666666666666655555 56666666665555555555555 5566666666


Q ss_pred             cCCCCCChHHHHHHH---hcCCcCCEEEecCCc-cChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHHhcCccccc
Q 006794          529 DGCRKITDASLVAIG---NNCMFLSYLDVSKCA-ITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGL  604 (631)
Q Consensus       529 ~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L  604 (631)
                      ++|..++|.++..+.   ..+..|+.+.|++|. +++..++.+.  .|++|+++++-+|..++..++..+...+|+++..
T Consensus       380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~--~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS--ICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh--hCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            666666665554443   233445555555554 3344444444  5555555555555555555555555555555555


Q ss_pred             ccccccCCCHHHHHHH
Q 006794          605 NLQNCNSINSSTVARL  620 (631)
Q Consensus       605 ~l~~c~~l~~~~~~~l  620 (631)
                      .+.. +..+...++.+
T Consensus       458 a~~a-~~t~p~~v~~~  472 (483)
T KOG4341|consen  458 AYFA-PVTPPGFVKGL  472 (483)
T ss_pred             hhcc-CCCCccccccc
Confidence            5444 43333333333

>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query631
3ogk_B592 Structure Of Coi1-Ask1 In Complex With Coronatine A 2e-06
1fqv_A336 Insights Into Scf Ubiquitin Ligases From The Struct 9e-06
1fs2_A272 Insights Into Scf Ubiquitin Ligases From The Struct 2e-05
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 38/261 (14%)
Query: 216 ISNESLIAIAENCPNLTSLNIESCSKIGNDGLQAIGKFCRNLQCLSIK----DCPLVRDQ 271
           +  E    + + CPNL  L  E+ + IG+ GL+ + ++C+ L+ L I+    +  +  ++
Sbjct: 305 LETEDHCTLIQKCPNLEVL--ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362
Query: 272 GIXXXXXXXXXXXTRVKLQAL-----NITDFSLAVIGHYGKALTNLVL---------SDL 317
           G+              +L+ +     +IT+ SL  IG Y K L +  L         +DL
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422
Query: 318 PNVSEKGFWVMGNAQGLQKLVSLTIA-SGGGVTDVSLEAMGKGCLNLKQMCLRKCCFV-- 374
           P   + G  V     G +KL         GG+TD+ L  +G+   N++ M L    +V  
Sbjct: 423 P--LDNG--VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL---GYVGE 475
Query: 375 SDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIKDMATE- 433
           SD GL+ FS+   +L+ L++  C   S+  I   V    +KL SL  +   G +   T  
Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAV----TKLPSLRYLWVQGYRASMTGQ 530
Query: 434 --MPMLSPNCSLRSLSIRNCP 452
             M M  P  ++  +  R  P
Sbjct: 531 DLMQMARPYWNIELIPSRRVP 551
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336 Back     alignment and structure
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query631
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 3e-79
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 5e-09
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 2e-72
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 9e-59
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 4e-33
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 4e-20
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-37
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-32
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 3e-22
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 3e-23
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 4e-18
1z7x_W 461 Ribonuclease inhibitor; leucine-rich repeat, enzym 3e-15
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 3e-15
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 5e-15
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 7e-15
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 2e-10
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 9e-09
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 2e-07
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 2e-07
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 1e-06
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 3e-14
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 8e-13
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 5e-12
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 1e-12
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 7e-12
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 5e-09
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 3e-06
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 4e-12
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 2e-08
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 1e-07
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 2e-05
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 5e-09
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 4e-08
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 9e-07
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 3e-06
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 4e-08
4ezg_A197 Putative uncharacterized protein; internalin-A, le 4e-07
4ezg_A197 Putative uncharacterized protein; internalin-A, le 6e-06
4ezg_A197 Putative uncharacterized protein; internalin-A, le 8e-04
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 1e-06
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 1e-05
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 3e-05
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 3e-06
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 5e-06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 2e-05
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 2e-05
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 1e-04
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 4e-05
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 5e-05
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 4e-05
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 9e-05
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 1e-04
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 2e-04
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 3e-04
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 7e-04
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 7e-04
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
 Score =  261 bits (668), Expect = 3e-79
 Identities = 116/602 (19%), Positives = 217/602 (36%), Gaps = 65/602 (10%)

Query: 46  QPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKA-EICKSEKLEKEVVA 104
           +      P+E L  +F  +   K+R+  + V K W  +    R+   I     +    V 
Sbjct: 3   KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVI 62

Query: 105 SVSDHVEMVSCDEDGDGYLTRC-LDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTHG 163
                V  V     G  +     L            I   +S +  L ++ ++       
Sbjct: 63  RRFPKVRSVELK--GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV---- 116

Query: 164 VTNFGLSAIARGCPSLKSLSLWNVPSVGDEGLLEIAKECHLLEKLEL--CHCPSISNESL 221
           VT+  L  IA+   + K L L +      +GL  IA  C  L++L+L       +S   L
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176

Query: 222 IAIAENCPNLTSLNIESC-SKIGNDGLQAIGKFCRNLQCLSIKDCPLVRDQGISSLLSSA 280
               +   +L SLNI    S++    L+ +   C NL+ L +     V  + +++LL  A
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRA 234

Query: 281 SSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPNVSEKGFWVMGNAQGLQKLVSL 340
                   L+ L    ++  V       L+                      G ++L  L
Sbjct: 235 PQ------LEELGTGGYTAEVRPDVYSGLSVA------------------LSGCKELRCL 270

Query: 341 TIASGGGVTDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRV 400
           +           L A+   C  L  + L     V    LV        L+ L +   + +
Sbjct: 271 SGFW--DAVPAYLPAVYSVCSRLTTLNLS-YATVQSYDLVKLLCQCPKLQRLWV--LDYI 325

Query: 401 SQSGILGVVSNSASKLKSLTLVKCMGIKDMATE------MPMLSPNCSLRSLSIRNCPGF 454
             +G L V++++   L+ L +                  +  +S  C      +  C   
Sbjct: 326 EDAG-LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

Query: 455 GNASLAMLGKLCPQLQHVDLSGL---------YGITDVGIFPLLESCKAGLVKVNLSGCL 505
            NA+L  + +  P +    L  +             D+G   ++E CK  L +++LSG  
Sbjct: 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-DLRRLSLSGL- 442

Query: 506 NLTDEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGIS 565
            LTD+V   +   +++ +E+L++      +D  +  + + C  L  L++  C   D  + 
Sbjct: 443 -LTDKVFEYIGT-YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499

Query: 566 ALSHAEQLNLQVLSLSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLW 625
           A +   +  ++ L +SSCS VS  +   L +    L    +    + +S   +  VE ++
Sbjct: 500 ANASKLE-TMRSLWMSSCS-VSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVF 557

Query: 626 RC 627
             
Sbjct: 558 IY 559
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query631
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 100.0
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 100.0
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.98
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.97
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.96
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.95
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.94
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.86
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 99.86
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 99.85
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 99.85
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 99.85
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 99.84
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 99.84
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.8
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.8
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.8
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.8
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.8
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.8
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.79
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.78
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 99.78
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 99.78
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.77
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.76
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.76
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.75
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.75
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.73
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.73
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.73
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.73
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.73
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.72
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.71
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.69
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.67
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.66
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.66
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.65
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.64
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.62
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.6
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.59
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.57
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.56
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.56
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.52
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.51
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.5
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 99.48
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.47
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.43
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 99.41
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.39
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.37
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.36
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.35
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.35
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.34
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.34
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 99.34
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.34
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.31
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 99.31
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.3
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.28
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.27
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.27
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.27
3zyj_A 440 Leucine-rich repeat-containing protein 4C; cell ad 99.26
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.25
3zyi_A 452 Leucine-rich repeat-containing protein 4; cell adh 99.25
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.25
3zyi_A 452 Leucine-rich repeat-containing protein 4; cell adh 99.22
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.22
3zyj_A 440 Leucine-rich repeat-containing protein 4C; cell ad 99.22
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.19
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.19
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.15
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.15
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.14
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.13
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.12
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.08
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.04
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 99.04
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.01
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.0
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.95
4ezg_A197 Putative uncharacterized protein; internalin-A, le 98.94
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 98.94
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.93
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 98.93
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.92
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.91
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.9
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.87
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 98.85
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.85
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.85
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.84
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 98.84
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.78
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.75
3m19_A251 Variable lymphocyte receptor A diversity region; a 98.74
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.74
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.73
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.72
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 98.68
3m19_A251 Variable lymphocyte receptor A diversity region; a 98.67
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.62
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 98.47
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 98.47
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 98.47
2xot_A 361 Amphoterin-induced protein 1; cell adhesion, neuro 98.44
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 98.41
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.4
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 98.39
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 98.38
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 98.38
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.38
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.36
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 98.35
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 98.28
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 98.26
3e6j_A229 Variable lymphocyte receptor diversity region; var 98.26
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 98.24
2xot_A 361 Amphoterin-induced protein 1; cell adhesion, neuro 98.23
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 98.18
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.13
3e6j_A229 Variable lymphocyte receptor diversity region; var 98.11
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 98.09
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.07
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.06
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.02
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.0
1w8a_A192 SLIT protein; signaling protein, secreted protein, 97.99
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 97.97
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 97.97
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 97.94
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 97.87
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 97.87
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 97.74
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 97.67
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 97.56
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.55
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 97.41
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.38
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 97.36
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.33
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.28
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 97.23
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 97.17
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 97.13
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 97.09
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 96.58
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 96.41
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 96.15
4fdw_A401 Leucine rich hypothetical protein; putative cell s 95.99
4fdw_A401 Leucine rich hypothetical protein; putative cell s 95.51
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 95.48
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
Probab=100.00  E-value=9.1e-42  Score=366.70  Aligned_cols=506  Identities=19%  Similarity=0.236  Sum_probs=303.8

Q ss_pred             CCCcCCCCHHHHHHHhccCCCcccchhhhhhhHHHHHHHhhhhhhhhccchhhHHHhhhcccccccccccCCCCCCccce
Q 006794           46 QPSIDVLPDECLYEIFRRLPSGKERSFAACVSKKWLMMLTSIRKAEICKSEKLEKEVVASVSDHVEMVSCDEDGDGYLTR  125 (631)
Q Consensus        46 ~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  125 (631)
                      .+.|+.||+||+.+||+||+..+|++++++|||+|+++. .+.+..+...            .+                
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~-~~~~~~l~~~------------~~----------------   53 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE-RWCRRKVFIG------------NC----------------   53 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH-HHHCCEEEES------------ST----------------
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh-hhhceEEeec------------cc----------------
Confidence            478999999999999999997899999999999999983 2221111110            00                


Q ss_pred             eccCCCccchhhHHHhhcccCCCCcceeEeeCccccC----------ccChhhHHHHHhcCCCCCeEeecCCCCCChhhH
Q 006794          126 CLDGKKATDLRLAAIAVGTSGHGGLGKLSIRGNKYTH----------GVTNFGLSAIARGCPSLKSLSLWNVPSVGDEGL  195 (631)
Q Consensus       126 ~~~~~~~~~~~l~~~~~~~~~~~~l~~L~l~~~~~~~----------~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  195 (631)
                          ......      .....++++++|+++++....          .....++..+...+++|++|+++++ .+++..+
T Consensus        54 ----~~~~~~------~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~  122 (594)
T 2p1m_B           54 ----YAVSPA------TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCL  122 (594)
T ss_dssp             ----TSSCHH------HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred             ----cccCHH------HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHH
Confidence                000000      011234678888888754221          1123345666677888888888887 4777777


Q ss_pred             HHHHHhCCCCCEeeccCCCCCChHHHHHHHhhCCCCcEEeecCCCCCCh---hHHHHHhhcCCCCcEEEccCCC-Ccchh
Q 006794          196 LEIAKECHLLEKLELCHCPSISNESLIAIAENCPNLTSLNIESCSKIGN---DGLQAIGKFCRNLQCLSIKDCP-LVRDQ  271 (631)
Q Consensus       196 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~l~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~-~~~~~  271 (631)
                      ..+...+++|++|++.+|..+++.++..+..++++|++|++++|. +++   ..+..+...+++|++|+++++. .+...
T Consensus       123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~  201 (594)
T 2p1m_B          123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS  201 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH
T ss_pred             HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH
Confidence            777767888888888887677777788887788888888888764 333   3344445457888888888775 45556


Q ss_pred             hHHHHHhhhhhcccceeccccccchhhHHHHhhccccccccccCCCCC-CchhhHHHh-hccccCCCcceE-eccCCCCC
Q 006794          272 GISSLLSSASSVLTRVKLQALNITDFSLAVIGHYGKALTNLVLSDLPN-VSEKGFWVM-GNAQGLQKLVSL-TIASGGGV  348 (631)
Q Consensus       272 ~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~-~~~~~~~~L~~L-~l~~~~~~  348 (631)
                      .+..+...++. |+.|++.++.. ...+..+...+++|+.|++..+.. +....+..+ ..+..+++|+.| .+.+   .
T Consensus       202 ~l~~l~~~~~~-L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~---~  276 (594)
T 2p1m_B          202 ALERLVTRCPN-LKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD---A  276 (594)
T ss_dssp             HHHHHHHHCTT-CCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT---C
T ss_pred             HHHHHHHhCCC-CcEEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc---c
Confidence            66666555544 77777776521 112445555667777777665432 222222111 123455666666 2222   2


Q ss_pred             ChHHHHHHhhcCCCcCeEEcCCCCCCCHHHHHHHHHhcCCCCeEeccCCCCCchhhHHHHHhcccCCCcEEecccccCCC
Q 006794          349 TDVSLEAMGKGCLNLKQMCLRKCCFVSDNGLVAFSKAAGSLEILQLEECNRVSQSGILGVVSNSASKLKSLTLVKCMGIK  428 (631)
Q Consensus       349 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  428 (631)
                      ....+..+...+++|++|++++|. +++.++..+...+++|++|++.+|  +++.++...... +++|++|++.+|....
T Consensus       277 ~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~-~~~L~~L~L~~~~~~g  352 (594)
T 2p1m_B          277 VPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLAST-CKDLRELRVFPSEPFV  352 (594)
T ss_dssp             CGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHH-CTTCCEEEEECSCTTC
T ss_pred             chhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHh-CCCCCEEEEecCcccc
Confidence            233333333345677777777664 666666666666677777777665  344443333222 2556666654431000


Q ss_pred             ccccccccCCCCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecC-----C
Q 006794          429 DMATEMPMLSPNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLS-----G  503 (631)
Q Consensus       429 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~-----~  503 (631)
                                         ..+|..+++..+..+...+++|+.|.+ +|+.+++.++..+...++ +|++|+++     +
T Consensus       353 -------------------~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~~~  411 (594)
T 2p1m_B          353 -------------------MEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRP-NMTRFRLCIIEPKA  411 (594)
T ss_dssp             -------------------SSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCT-TCCEEEEEESSTTC
T ss_pred             -------------------cccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCC-CcceeEeecccCCC
Confidence                               023344566666666666677777744 346666666666655555 67777776     5


Q ss_pred             CCCCc----hHHHHHHHhhcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCCccChhhHHhhhhccCCCccEEe
Q 006794          504 CLNLT----DEVVLALARLHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKCAITDMGISALSHAEQLNLQVLS  579 (631)
Q Consensus       504 c~~l~----~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~L~~L~  579 (631)
                      |+.++    +.++..+.. .+++|+.|++++  .+++.++..+...+++|+.|+|++|.+++.++..+. ..+++|++|+
T Consensus       412 ~~~l~~~~~~~~~~~l~~-~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-~~~~~L~~L~  487 (594)
T 2p1m_B          412 PDYLTLEPLDIGFGAIVE-HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL-SGCDSLRKLE  487 (594)
T ss_dssp             CCTTTCCCTHHHHHHHHH-HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH-HHCTTCCEEE
T ss_pred             cccccCCchhhHHHHHHh-hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH-hcCCCcCEEE
Confidence            56666    555555554 566777777754  666666666665667777777777777666666654 3566777777


Q ss_pred             ccCCCCCCcchHHHHHHhcCcccccccccccCCCHHHHHHHHhhccccc
Q 006794          580 LSSCSEVSNKSMPALKKLGKTLVGLNLQNCNSINSSTVARLVESLWRCD  628 (631)
Q Consensus       580 l~~c~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~l~~~l~~~~  628 (631)
                      +++|+ +++..+..+...+++|+.|++++|+ ++..+++.+.+.+|.+.
T Consensus       488 L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~  534 (594)
T 2p1m_B          488 IRDCP-FGDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLN  534 (594)
T ss_dssp             EESCS-CCHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHHHHCTTEE
T ss_pred             CcCCC-CcHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHHHhCCCCE
Confidence            77765 4555555555556667777777764 36667776666665553
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 631
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 2e-06
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 9e-06
d1z7xw1 460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 2e-05
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 3e-04
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 7e-04
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 0.002
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 0.004
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 2e-06
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 1e-05
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 3e-05
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 4e-05
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 4e-04
d1io0a_166 c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic 0.001
d2ca6a1344 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom 0.004
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 178 SLKSLSLWNVPSVGDEGLLEIAKECHLLEKLELCHCPSISNESLIAIAE---NCPNLTSL 234
            ++SL +     + D    E+       + + L  C  ++      I+      P L  L
Sbjct: 3   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 60

Query: 235 NIESCSKIGNDGLQAIGKFCRNLQC 259
           N+   +++G+ G+  + +  +   C
Sbjct: 61  NL-RSNELGDVGVHCVLQGLQTPSC 84
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166 Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query631
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.87
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.87
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.87
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.82
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.51
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.5
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.38
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.32
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.25
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.0
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 98.93
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.89
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.85
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.82
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.8
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.77
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 98.74
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.73
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.72
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.69
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.67
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.65
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.61
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.61
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.59
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.59
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.51
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 98.51
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.46
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.44
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.37
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 98.33
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.3
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 98.29
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.15
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.0
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 97.99
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 97.97
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 97.94
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 97.93
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 97.74
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 97.58
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.42
d2ifga3156 High affinity nerve growth factor receptor, N-term 97.13
d2ifga3156 High affinity nerve growth factor receptor, N-term 97.03
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.0
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=184.89  Aligned_cols=166  Identities=23%  Similarity=0.378  Sum_probs=120.0

Q ss_pred             CCCCCceEeccCCCCCCHHHHHHHhhcCCCCcEEecccccCCCchhhHHHHhhcccCccEEecCCC-CCCchHHHHHHHh
Q 006794          439 PNCSLRSLSIRNCPGFGNASLAMLGKLCPQLQHVDLSGLYGITDVGIFPLLESCKAGLVKVNLSGC-LNLTDEVVLALAR  517 (631)
Q Consensus       439 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~L~~L~l~~c-~~l~~~~~~~l~~  517 (631)
                      .+++|++|++++|..+++..+..+++.+|+|++|++++|..++++++...+....+.|+.|++++| ..+++.++..+..
T Consensus        93 ~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~  172 (284)
T d2astb2          93 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  172 (284)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccc
Confidence            456677777777777777777777777788888888887778777776655554347888888776 3577777777766


Q ss_pred             hcCcccCeecccCCCCCChHHHHHHHhcCCcCCEEEecCC-ccChhhHHhhhhccCCCccEEeccCCCCCCcchHHHHHH
Q 006794          518 LHSETLELLNLDGCRKITDASLVAIGNNCMFLSYLDVSKC-AITDMGISALSHAEQLNLQVLSLSSCSEVSNKSMPALKK  596 (631)
Q Consensus       518 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  596 (631)
                       ++++|++|++++|..+++.++..+.+ +++|++|+|++| .+++.++..+.  .+|+|+.|++++|  +++.++..+..
T Consensus       173 -~~~~L~~L~L~~~~~itd~~~~~l~~-~~~L~~L~L~~C~~i~~~~l~~L~--~~~~L~~L~l~~~--~~d~~l~~l~~  246 (284)
T d2astb2         173 -RCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG--EIPTLKTLQVFGI--VPDGTLQLLKE  246 (284)
T ss_dssp             -HCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTS--SCTTCHHHHHH
T ss_pred             -ccccccccccccccCCCchhhhhhcc-cCcCCEEECCCCCCCChHHHHHHh--cCCCCCEEeeeCC--CCHHHHHHHHH
Confidence             67888888888877787777766664 788888888886 47777777766  6778888888876  67777777776


Q ss_pred             hcCcccccccccccCCCH
Q 006794          597 LGKTLVGLNLQNCNSINS  614 (631)
Q Consensus       597 ~~~~L~~L~l~~c~~l~~  614 (631)
                      .+|+|+   + +|+.++.
T Consensus       247 ~lp~L~---i-~~~~ls~  260 (284)
T d2astb2         247 ALPHLQ---I-NCSHFTT  260 (284)
T ss_dssp             HSTTSE---E-SCCCSCC
T ss_pred             hCcccc---c-cCccCCC
Confidence            666554   2 3455543
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure