Citrus Sinensis ID: 006796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
Protein Sequence
MNYAKILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MNYAKILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLdsaemwsfndtstSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTqhcddvirgqntgtyqretkldefecrdvhinndadtnlvsqrndpaycdieadrkGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVlagngekriviperdGRLRNLLKktnlrrwigtldfsgnegqadlniregistrrsnSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTAlgsslpvswiaesddgsinentdsesgdihgdssnekmDSVSAAGFEMVELLILAAQILKdsttkens
Flexible Loop (DISEMBL)
MNYAKILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKtqhcddvirgqntgtyqreTKLDEFECRDVHinndadtnlvsqrndPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEekvlagngekriviperdgrlrnllkktnlrrwigtldfsgnegqadlniregistrrsnsidfARMRIENATLKESLENMDHLISSIRRLRLSLSKVkelatsedtigsmseTLDDIITEAKLVKTALgsslpvswiaesddgsinentdsesgdihgdssNEKMDSVSAAGFEMVELLILAAQilkdsttkens
Low Complexity Region (SEG)
MNYAKILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMeaekakekeeLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGrlrnllkktnlrrWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHlissirrlrlslsKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
Disordered region (IsUnstruct)
***AKILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA***********************************************************SFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI*********************************SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLV******AYCDI***************LQEKVAALLLLS******LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNI*************FARMRI************DHLISSIRRLRLSL******************TLDDIITEAKLVKTALGSSLPVSWI*********************************AGFEMVELLILAAQIL*********
Disordered Region (DISOPRED)
***AKI*SSCVCSK*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RLS*S****************ETLDDIITEAKLVKTALGSSLPVSWI*******************************SAAGFEMVELLILAAQIL*********
Disordered Region (DISEMBL)
MNYAKILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALE***********NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSIN*******************DSVSAAGFEMVELLILAAQILK********
Disordered Region (DISPRO)
MNYAKILSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNT*****ETKLDEFECRDVHINNDA**********************EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICN********AGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTL**********************NSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIA***************************DSVSAAGFEMVELLILAAQILKDS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNYAKILSSCVCSKLDLVTLLSPLVCISxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAxxxxxxxxxxxxxxxxxxxxxLMSQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYxxxxxxxxxxxxxxxxxxxxxLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
296083035	673	unnamed protein product [Vitis vinifera]	0.952	0.891	0.658	0.0
359475478	721	PREDICTED: uncharacterized protein LOC10	0.952	0.832	0.608	0.0
255583327	658	conserved hypothetical protein [Ricinus	0.950	0.910	0.642	0.0
356495819	653	PREDICTED: uncharacterized protein LOC10	0.942	0.909	0.607	0.0
147771163	655	hypothetical protein VITISV_013873 [Viti	0.871	0.838	0.562	1e-165
449438615	641	PREDICTED: uncharacterized protein LOC10	0.909	0.893	0.567	1e-161
449479020	641	PREDICTED: uncharacterized LOC101211967	0.911	0.895	0.565	1e-160
15225987	629	myosin heavy chain-related protein [Arab	0.906	0.907	0.541	1e-158
238479244	652	myosin heavy chain-related protein [Arab	0.906	0.875	0.533	1e-154
297831932	629	predicted protein [Arabidopsis lyrata su	0.906	0.907	0.540	1e-154

>gi|296083035|emb|CBI22439.3| unnamed protein product [Vitis vinifera]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/606 (65%), Positives = 472/606 (77%), Gaps = 6/606 (0%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           AGLEQEIE LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQ
Sbjct: 54  AGLEQEIENLKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQ 113

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           GC+AAAFAERD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL 
Sbjct: 114 GCVAAAFAERDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLA 173

Query: 150 KQEELNESFKEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKY 205
            QE+ NE+FK+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKY
Sbjct: 174 NQEDQNETFKKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKY 233

Query: 206 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 265
           I ALE+ELE  R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   
Sbjct: 234 IDALEEELEMVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHY 293

Query: 266 HSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVH 325
           HSQ R+HVVN L+EG+SH+KSI DV+EEK +  D   R QN    QR+ KL E ECRDVH
Sbjct: 294 HSQHRLHVVNLLDEGKSHLKSIIDVVEEKIRQLD-ADREQNLEPPQRDLKLYENECRDVH 352

Query: 326 INNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNV 385
           ++   D N V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQQEERHLLE NV
Sbjct: 353 VSIVGDHNSVAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQQEERHLLESNV 412

Query: 386 NSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKR 445
           N  LQKK+EELQRNL QVT EKVKALMELAQLKQ+YQLLQEKI ++MK+   LA  GEKR
Sbjct: 413 NIVLQKKMEELQRNLLQVTNEKVKALMELAQLKQEYQLLQEKISHDMKQGNFLADIGEKR 472

Query: 446 IVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN-SIDFARMRIE 504
               ERDG+L+NLLKKT LRRWIG LD+SGN+ +A LN     S R+SN S+DFARM+IE
Sbjct: 473 NATLERDGKLKNLLKKTYLRRWIGALDYSGNQAEAHLNSEGNFSGRKSNYSMDFARMKIE 532

Query: 505 NATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALG 564
           NATLKES+E+++HL SSIRRLRL+L + KE  TS  T+ S+ E LDDII EAKLVKTALG
Sbjct: 533 NATLKESMESIEHLTSSIRRLRLTLLEAKESVTSGGTVSSVLEALDDIINEAKLVKTALG 592

Query: 565 SSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDS 624
           SSLPVSW AE+D  S  E+ D+  G  HGDSS+EK+DSV AAGFEMVELLI A Q+LKDS
Sbjct: 593 SSLPVSWSAEADGESFGESMDNAPGCFHGDSSSEKIDSVCAAGFEMVELLIFAVQVLKDS 652

Query: 625 TTKENS 630
           T K +S
Sbjct: 653 TIKRSS 658

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475478|ref|XP_002264967.2| PREDICTED: uncharacterized protein LOC100251573 [Vitis vinifera]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/654 (60%), Positives = 472/654 (72%), Gaps = 54/654 (8%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           AGLEQEIE LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQ
Sbjct: 54  AGLEQEIENLKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQ 113

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           GC+AAAFAERD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL 
Sbjct: 114 GCVAAAFAERDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLA 173

Query: 150 KQEELNESFKEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKY 205
            QE+ NE+FK+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKY
Sbjct: 174 NQEDQNETFKKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKY 233

Query: 206 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 265
           I ALE+ELE  R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   
Sbjct: 234 IDALEEELEMVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHY 293

Query: 266 HSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVH 325
           HSQ R+HVVN L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL E ECRDVH
Sbjct: 294 HSQHRLHVVNLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKLYENECRDVH 352

Query: 326 INNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNV 385
           ++   D N V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQQEERHLLE NV
Sbjct: 353 VSIVGDHNSVAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQQEERHLLESNV 412

Query: 386 NSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE------------------- 426
           N  LQKK+EELQRNL QVT EKVKALMELAQLKQ+YQLLQ+                   
Sbjct: 413 NIVLQKKMEELQRNLLQVTNEKVKALMELAQLKQEYQLLQDIRSALCTWSIDGLQIPVYM 472

Query: 427 -----------------------------KICNEMKEEKVLAGNGEKRIVIPERDGRLRN 457
                                        KI ++MK+   LA  GEKR    ERDG+L+N
Sbjct: 473 ISIEGATAAANRTLNAALLVLLLKGKSEGKISHDMKQGNFLADIGEKRNATLERDGKLKN 532

Query: 458 LLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN-SIDFARMRIENATLKESLENMD 516
           LLKKT LRRWIG LD+SGN+ +A LN     S R+SN S+DFARM+IENATLKES+E+++
Sbjct: 533 LLKKTYLRRWIGALDYSGNQAEAHLNSEGNFSGRKSNYSMDFARMKIENATLKESMESIE 592

Query: 517 HLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESD 576
           HL SSIRRLRL+L + KE  TS  T+ S+ E LDDII EAKLVKTALGSSLPVSW AE+D
Sbjct: 593 HLTSSIRRLRLTLLEAKESVTSGGTVSSVLEALDDIINEAKLVKTALGSSLPVSWSAEAD 652

Query: 577 DGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS 630
             S  E+ D+  G  HGDSS+EK+DSV AAGFEMVELLI A Q+LKDST K +S
Sbjct: 653 GESFGESMDNAPGCFHGDSSSEKIDSVCAAGFEMVELLIFAVQVLKDSTIKRSS 706

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583327|ref|XP_002532426.1| conserved hypothetical protein [Ricinus communis] gi|223527875|gb|EEF29967.1| conserved hypothetical protein [Ricinus communis]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/601 (64%), Positives = 454/601 (75%), Gaps = 2/601 (0%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           AGLEQEIE LK+K+AAC R+N NLQEELSEAYRIK QLADLH AEV KN EAEKQ+KFFQ
Sbjct: 54  AGLEQEIENLKKKLAACTRDNLNLQEELSEAYRIKSQLADLHNAEVAKNKEAEKQLKFFQ 113

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           GC+A+AFAERDNS+MEAEKAKEKEELMSQKFNEFQ RLEEL+S+ +E K+QN  L+ +L 
Sbjct: 114 GCVASAFAERDNSIMEAEKAKEKEELMSQKFNEFQKRLEELTSDCLEQKRQNEALQINLA 173

Query: 150 KQEELNESFKEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
           KQEE NES K+V NKFYEIRQ SLE  E  SWEDKC  LL DS EMWS+ND STS YISA
Sbjct: 174 KQEEQNESLKKVANKFYEIRQHSLEGFEDASWEDKCTWLLHDSKEMWSYNDASTSNYISA 233

Query: 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268
           LE+ELE+ R S +NLQSKLR+GLEIENHLKK VRELEKK I  DK + N IA LR  HS+
Sbjct: 234 LEEELEQVRKSADNLQSKLRVGLEIENHLKKQVRELEKKQIQLDKMVMNGIAGLRHYHSE 293

Query: 269 LRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINN 328
            R H++N L EG+ H+KS  D++EEK        + QN    QR   L+E ECRDVHI+N
Sbjct: 294 HRGHIMNLLNEGKLHMKSTMDMLEEKIGETYGS-KEQNLRPSQRVIDLEENECRDVHISN 352

Query: 329 DADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSA 388
           D  + L+S+       D   + +  +SE LAQ LQEKVAALLLLSQQEERHLLERNVN+ 
Sbjct: 353 DIGSALISEEVKHGLHDSGDNEEENSSEALAQVLQEKVAALLLLSQQEERHLLERNVNAV 412

Query: 389 LQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVI 448
           LQKK+EELQRNL QVT EKVKAL+ELAQLKQ YQ L EKI + ++E  +     E+R   
Sbjct: 413 LQKKMEELQRNLLQVTNEKVKALVELAQLKQAYQQLHEKISHGIQEGNLSIDKVERRHFT 472

Query: 449 PERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATL 508
            ++DGRLRNLLK+T L+RW+GT     NE +A LN     S+R  +SIDFARM+IENATL
Sbjct: 473 HDKDGRLRNLLKRTYLKRWMGTSGIGVNEEEAHLNNEGNFSSRTHSSIDFARMKIENATL 532

Query: 509 KESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLP 568
           KES+E+M+HL SSI RLR +L KVKE A  E T   + E L DI++EAKL+KTA GSSLP
Sbjct: 533 KESMESMEHLTSSIHRLRCALLKVKESAACEGTCVGVLEALHDIVSEAKLLKTAFGSSLP 592

Query: 569 VSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKE 628
           +SW AE+ D S   +T +E GD+  DSS EKMDSVSAAGFEMVELLILAAQIL+   TK+
Sbjct: 593 ISWSAEAVDTSTGGSTHNEPGDLDEDSSYEKMDSVSAAGFEMVELLILAAQILEAYPTKQ 652

Query: 629 N 629
            
Sbjct: 653 G 653

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495819|ref|XP_003516769.1| PREDICTED: uncharacterized protein LOC100775191 [Glycine max]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/599 (60%), Positives = 448/599 (74%), Gaps = 5/599 (0%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           AGLEQEIE LK+K+AAC REN NLQEELSEAYRIKGQLADLH+AEV KNMEAEKQVKFFQ
Sbjct: 53  AGLEQEIESLKKKLAACTRENLNLQEELSEAYRIKGQLADLHSAEVSKNMEAEKQVKFFQ 112

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           GC+AAAF+ERD +++EAEKAKEKEE M Q+ N    R+EEL+S+ ++LK+ N  L+ D  
Sbjct: 113 GCVAAAFSERDQAIIEAEKAKEKEETMLQQINGIHKRVEELTSDCLKLKEFNDALQIDQA 172

Query: 150 KQEELNESFKEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
              + NE+  +VINKF++IRQ SL+  E  SW +KCACLL DS E+WSFND STSKYISA
Sbjct: 173 VHMKQNENCMKVINKFFQIRQHSLKEFEDMSWNEKCACLLGDSEEVWSFNDASTSKYISA 232

Query: 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268
           LE++LE+ R+S++ LQ+KLR+GLEIENHLKK V  LE K I  DK I N+IA+L+  HS+
Sbjct: 233 LEEQLERLRNSMDYLQNKLRVGLEIENHLKKRVNALENKQISMDKVIENSIADLKHYHSK 292

Query: 269 LRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINN 328
            R  ++N L +G S IKSI + I+EK    D  +      T QR+ + +E EC D+HI+ 
Sbjct: 293 CRDEIMNLLGDGESSIKSIINAIDEKVWSFD--LSTVPNLTPQRDAEPEESECADLHISP 350

Query: 329 DADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSA 388
            A     S+RN P+    +A  KG+ S+ LA ALQEKVAALLLLSQQEERHLLERNVNSA
Sbjct: 351 QAKPVSESKRNSPSALSADAGVKGDPSDVLAMALQEKVAALLLLSQQEERHLLERNVNSA 410

Query: 389 LQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVI 448
           LQ K EELQRNL QVT EKVKALMELAQLKQ++QLL EK  +E K+ K +   G++++V 
Sbjct: 411 LQGKTEELQRNLLQVTNEKVKALMELAQLKQEHQLLLEKFGHEPKQGKGVVNTGDRQLVT 470

Query: 449 PERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATL 508
            ERDG L+NLLKK+ LRRWIG LD SGNE  +  N    I   RS+S+DFARM+IENATL
Sbjct: 471 RERDGTLKNLLKKSYLRRWIGPLDVSGNEVDSSSNNEGKIFNHRSSSMDFARMKIENATL 530

Query: 509 KESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLP 568
           KES+E+M+ L SSI RLRLSL K  E   SE TI  +SE L+D+I EA+L++TALGSSLP
Sbjct: 531 KESMESMERLTSSIHRLRLSLLKATESVISEGTISGVSEILNDVIHEAELLRTALGSSLP 590

Query: 569 VSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTK 627
            SW AE+D   I  N  S++G  H + S+EKMD+VSAAG EMVELLI +AQIL+D  TK
Sbjct: 591 TSWSAEADISYIGYNVGSDTG--HQECSDEKMDTVSAAGLEMVELLIFSAQILRDLQTK 647

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771163|emb|CAN60964.1| hypothetical protein VITISV_013873 [Vitis vinifera]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 346/615 (56%), Positives = 419/615 (68%), Gaps = 66/615 (10%)

Query: 81  AEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 140
           AEKQ+KFFQGC+AAAFAERD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ 
Sbjct: 27  AEKQIKFFQGCVAAAFAERDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQL 86

Query: 141 NATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN- 198
           N  L+ DL  QE+ NE+FK+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN 
Sbjct: 87  NVALQIDLANQEDQNETFKKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNT 146

Query: 199 --DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 256
             +TSTSKYI ALE+ELE  R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   
Sbjct: 147 NEETSTSKYIDALEEELEMVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFK 206

Query: 257 NAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKL 316
           N I+ L   HSQ R+HVVN L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL
Sbjct: 207 NRISGLLHYHSQHRLHVVNLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKL 265

Query: 317 DEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQE 376
            E ECRDVH++   D N V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQQE
Sbjct: 266 YENECRDVHVSIVGDHNSVAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQQE 325

Query: 377 ERHLLERNVNSALQKKIEELQRNLFQ---------------------------------V 403
           ERHLLE NVN  LQKK+EELQRNL Q                                 V
Sbjct: 326 ERHLLESNVNIVLQKKMEELQRNLLQALCIGSYILFVVFSFRLRVFWGQGSRFGFFIWEV 385

Query: 404 TTEKVKALMELAQ---------------------LKQDYQLLQE------KICNEMKEEK 436
             EK+  + +L +                     L +  QL QE      KI ++MK+  
Sbjct: 386 VWEKILTIDQLMRRGGFLRIGVAYAGVTNEKVKALMELAQLKQEYQLLQEKISHDMKQGN 445

Query: 437 VLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN-S 495
            LA  GEKR    ERDG+L+NLLKKT LRRWIG LD+SGN+ +A LN     S R+SN S
Sbjct: 446 FLADIGEKRNATLERDGKLKNLLKKTYLRRWIGALDYSGNQAEAHLNSEGNFSGRKSNYS 505

Query: 496 IDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITE 555
           +DFARM+IENATLKES+E+++HL SSIRRLRL+L + KE  TS  T+ S+ E LDDII E
Sbjct: 506 MDFARMKIENATLKESMESIEHLTSSIRRLRLTLLEAKESVTSGGTVSSVLEALDDIINE 565

Query: 556 AKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLI 615
           AKLVKTALGSSLPVSW AE+D  S  E+ D+  G  HGDSS+EK+DSV AAGFEMVELLI
Sbjct: 566 AKLVKTALGSSLPVSWSAEADGESFGESMDNAPGCFHGDSSSEKIDSVCAAGFEMVELLI 625

Query: 616 LAAQILKDSTTKENS 630
            A Q+LKDST K +S
Sbjct: 626 FAVQVLKDSTIKRSS 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438615|ref|XP_004137083.1| PREDICTED: uncharacterized protein LOC101211967 [Cucumis sativus]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 339/597 (56%), Positives = 434/597 (72%), Gaps = 24/597 (4%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           AGLEQEIE LK+K AAC REN NLQEEL+EAYRIK QLADLH++EV KN+E+EKQ+KFFQ
Sbjct: 54  AGLEQEIENLKKKFAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQ 113

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           GC+A AFAERD+S+MEAEKAKEKEE MSQK  E + RLEELSS+ + L++ N TLR +L 
Sbjct: 114 GCVATAFAERDHSIMEAEKAKEKEETMSQKLKEVENRLEELSSDCLNLRETNDTLRINLA 173

Query: 150 KQEELNESFKEVINKFYEIRQQSLE-VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
           KQEE NE  K+VINKFYEIRQ SLE  ++TSW++KC CLL DS+EMWSFND+ST +YI++
Sbjct: 174 KQEEWNEVSKQVINKFYEIRQNSLEGFMDTSWDEKCQCLLHDSSEMWSFNDSSTFRYINS 233

Query: 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268
           LE+ LE  + +V+NLQ+KLRMG+EIE HLK  V +LE K+IH D  + + I+     +SQ
Sbjct: 234 LEEGLETMKKTVDNLQNKLRMGVEIEKHLKGKVHDLELKLIHMDDMVKSKISGFCQNYSQ 293

Query: 269 LRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKL--DEFECRDVHI 326
            R H++N LE+  S++ S    IEEK      V  G      +   K+  +E + ++ H+
Sbjct: 294 YRDHILNLLEKEMSNMHSTIGEIEEKI-----VQYGWGVQQLKDSEKVLKEENDSQEGHL 348

Query: 327 NNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVN 386
           + +A   +          D  AD   EA   LA ALQEKV+ALLLLSQQEERH+LER+VN
Sbjct: 349 STNAKMEI------HGLPDSVADGNAEA---LALALQEKVSALLLLSQQEERHMLERDVN 399

Query: 387 SALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRI 446
           +ALQ+K EELQRNL QVT EKVKALMELAQ+KQ+ QLL+EK  +++K     A   E+++
Sbjct: 400 AALQRKTEELQRNLLQVTHEKVKALMELAQVKQELQLLKEKSVHDLKRG---ADTVERKL 456

Query: 447 VIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENA 506
           V  ER+G+L+ LLK T LRRW+GT + SG+E  A L+  E  S+R+S ++DFAR++IENA
Sbjct: 457 VTHEREGKLKGLLKGTYLRRWVGTPEISGSEAAAHLDNEENYSSRKS-AVDFARIKIENA 515

Query: 507 TLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSS 566
           TL+ES+E+M+ L SSI RLRL L K KE ATSE    S+ E L  II EAKL+KTAL SS
Sbjct: 516 TLRESIESMEQLTSSIHRLRLYLLKAKESATSEGPGTSVLEGLKGIINEAKLIKTALCSS 575

Query: 567 LPVSWIAESDDGSINENTDSESGDI--HGDSSNEKMDSVSAAGFEMVELLILAAQIL 621
           LP+SW AE + GS +E T  +S D+   GDSS  K+D VSAAGFEMVELL+  A++L
Sbjct: 576 LPISWSAEVNAGS-SEETLHDSHDVLGEGDSSLGKIDFVSAAGFEMVELLVSVAELL 631

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479020|ref|XP_004155483.1| PREDICTED: uncharacterized LOC101211967 [Cucumis sativus]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 337/596 (56%), Positives = 436/596 (73%), Gaps = 22/596 (3%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           AGLEQEIE LK+K AAC REN NLQEEL+EAYRIK QLADLH++EV KN+E+EKQ+KFFQ
Sbjct: 54  AGLEQEIENLKKKFAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQ 113

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           GC+A AFAERD+S+MEAEKAKEKEE MSQK  E + RLEELSS+ + L++ N TLR +L 
Sbjct: 114 GCVATAFAERDHSIMEAEKAKEKEETMSQKLKEVENRLEELSSDCLNLRETNDTLRINLA 173

Query: 150 KQEELNESFKEVINKFYEIRQQSLE-VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
           KQEE NE  K+VINKFYEIRQ SL+  ++TSW++KC CLL DS+EMWSFND+ST +YI++
Sbjct: 174 KQEEWNEVSKQVINKFYEIRQNSLDGFMDTSWDEKCQCLLHDSSEMWSFNDSSTFRYINS 233

Query: 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268
           LE+ LE  + +V+NLQ+KLRMG+EIE HLK  V +LE K+IH D  + + I+     +SQ
Sbjct: 234 LEEGLETMKKTVDNLQNKLRMGVEIEKHLKGKVHDLELKLIHMDDMVKSKISGFCQNYSQ 293

Query: 269 LRVHVVNSLEEGRSHIKSISDVIEEK-TQHCDDVIRGQNTGTYQRETKLDEFECRDVHIN 327
            R H++N LE+  S++ S     EEK  Q+   V + +++    +E    E + ++ H++
Sbjct: 294 YRDHILNLLEKEMSNMHSTIGEFEEKIVQYGWGVQKLKDSEKVLKE----ENDSQEGHLS 349

Query: 328 NDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNS 387
            +A   +          D  AD   EA   LA ALQEKV+ALLLLSQQEERH+LER+VN+
Sbjct: 350 TNAKMEI------HGLPDSVADGNAEA---LALALQEKVSALLLLSQQEERHMLERDVNA 400

Query: 388 ALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIV 447
           ALQ+K EELQRNL QVT EKVKALMELAQ+KQ+ QLL+EK  +++K     A   E+++V
Sbjct: 401 ALQRKTEELQRNLLQVTHEKVKALMELAQVKQELQLLKEKSVHDLKRG---ADTVERKLV 457

Query: 448 IPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENAT 507
             ER+G+L+ LLK T LRRW+GT + SG+E  A L+  E  S+R+S ++DFAR++IENAT
Sbjct: 458 THEREGKLKGLLKGTYLRRWVGTPEISGSEAAAHLDNEENYSSRKS-AVDFARIKIENAT 516

Query: 508 LKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSL 567
           L+ES+E+M+ L SSI RLRL L K KE ATSE    S+ E L  II EAKL+KTAL SSL
Sbjct: 517 LRESIESMEQLTSSIHRLRLYLLKAKESATSEGPGTSVLEGLKGIINEAKLIKTALCSSL 576

Query: 568 PVSWIAESDDGSINENTDSESGDI--HGDSSNEKMDSVSAAGFEMVELLILAAQIL 621
           P+SW AE + GS +E T  +S D+   GDSS  K+D VSAAGFEMVELL+  A++L
Sbjct: 577 PISWSAEVNAGS-SEETLHDSHDVLGEGDSSLGKIDFVSAAGFEMVELLVSVAELL 631

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225987|ref|NP_179075.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|334184229|ref|NP_001189526.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|3810592|gb|AAC69374.1| unknown protein [Arabidopsis thaliana] gi|330251225|gb|AEC06319.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251227|gb|AEC06321.1| myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 323/596 (54%), Positives = 422/596 (70%), Gaps = 25/596 (4%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           A LEQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQ
Sbjct: 54  ASLEQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQ 113

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           G +AAAF+ERD SVMEAEKA+E  E+MSQK +E + RLEELSS+ +  K+ N TL+ DL 
Sbjct: 114 GSVAAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLA 173

Query: 150 KQEELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
           K EE   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++A
Sbjct: 174 KLEEQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAA 233

Query: 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268
           LE EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQ
Sbjct: 234 LEGELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQ 293

Query: 269 LRVHVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHIN 327
           LR +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+ 
Sbjct: 294 LRAYIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMT 350

Query: 328 NDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNS 387
              ++  V++  + +   I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+
Sbjct: 351 TVVESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNA 410

Query: 388 ALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIV 447
           ALQ+K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L++K+    +EE    GN  + ++
Sbjct: 411 ALQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQSLRDKMSGTREEEST--GNSGRIVI 468

Query: 448 IPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENAT 507
             E+DGRL+N+ KK+ + RWI       + G + LN     ++    +I+++RM++E A 
Sbjct: 469 SNEKDGRLKNMWKKSYINRWID----PSSRGGSHLNTEADYAS----NIEYSRMKVEYAA 520

Query: 508 LKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSL 567
           +KE+LE+M HL +SIRRLRL+L KVKEL  +E T  S    + +I+ EA  +KTALG S+
Sbjct: 521 IKENLESMGHLTTSIRRLRLALLKVKELNDTETTARSCEVAIANILVEATHLKTALGISI 580

Query: 568 PVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKD 623
           P+SW AESD  S+ +          G+SS E+ DSVSAAGFEMVEL+ILAA+I+K+
Sbjct: 581 PISWSAESDIESVTD----------GESSCERTDSVSAAGFEMVELVILAAEIMKE 626

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479244|ref|NP_001154517.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251226|gb|AEC06320.1| myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 330/619 (53%), Positives = 427/619 (68%), Gaps = 48/619 (7%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           A LEQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQ
Sbjct: 54  ASLEQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQ 113

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           G +AAAF+ERD SVMEAEKA+E  E+MSQK +E + RLEELSS+ +  K+ N TL+ DL 
Sbjct: 114 GSVAAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLA 173

Query: 150 KQEELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
           K EE   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++A
Sbjct: 174 KLEEQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAA 233

Query: 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268
           LE EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQ
Sbjct: 234 LEGELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQ 293

Query: 269 LRVHVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHIN 327
           LR +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+ 
Sbjct: 294 LRAYIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMT 350

Query: 328 NDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNS 387
              ++  V++  + +   I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+
Sbjct: 351 TVVESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNA 410

Query: 388 ALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE-----KIC------------- 429
           ALQ+K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L+E     K C             
Sbjct: 411 ALQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQSLREHGTFCKWCKPSFKTNFALSSV 470

Query: 430 -NEM---KEEKVLAGNGEKRIVIP-ERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNI 484
            N+M   +EE+    +G  RIVI  E+DGRL+N+ KK+ + RWI       + G + LN 
Sbjct: 471 LNKMSGTREEESTGNSG--RIVISNEKDGRLKNMWKKSYINRWID----PSSRGGSHLNT 524

Query: 485 REGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGS 544
               ++    +I+++RM++E A +KE+LE+M HL +SIRRLRL+L KVKEL  +E T  S
Sbjct: 525 EADYAS----NIEYSRMKVEYAAIKENLESMGHLTTSIRRLRLALLKVKELNDTETTARS 580

Query: 545 MSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVS 604
               + +I+ EA  +KTALG S+P+SW AESD  S+ +          G+SS E+ DSVS
Sbjct: 581 CEVAIANILVEATHLKTALGISIPISWSAESDIESVTD----------GESSCERTDSVS 630

Query: 605 AAGFEMVELLILAAQILKD 623
           AAGFEMVEL+ILAA+I+K+
Sbjct: 631 AAGFEMVELVILAAEIMKE 649

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831932|ref|XP_002883848.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329688|gb|EFH60107.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 322/596 (54%), Positives = 420/596 (70%), Gaps = 25/596 (4%)

Query: 30  AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
           A LEQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQ
Sbjct: 54  ASLEQEIESLKLKLAACTREKHNLQEELAEAYRVKTQLADLHAGEVAKNLEAEKQVRFFQ 113

Query: 90  GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
           G +AAAF+ERD SVMEAEKA+E  E+MSQK  E + RLEELSS+ +  K+ N TL+ DL 
Sbjct: 114 GSVAAAFSERDKSVMEAEKAEENAEMMSQKLGEIEMRLEELSSDCLVQKRLNDTLQADLA 173

Query: 150 KQEELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
           K EE   ++ +VI KF +IR+ SL E LE S  +KCA LL D  E W+FND STS+Y++A
Sbjct: 174 KLEEQTRTYAQVIEKFDDIRKASLCESLEMSLHNKCASLLDDPIESWTFNDPSTSEYVAA 233

Query: 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268
           LE EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D+ I N I ++R  HSQ
Sbjct: 234 LEGELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADRLIVNGITDIRHHHSQ 293

Query: 269 LRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINN 328
           LR ++++ L E   +IKSIS  +EEK +     IR  N    Q + K DE ECRDVHI  
Sbjct: 294 LRAYIIDLLTEEGLYIKSISKNVEEKLKLHSSEIR--NVVPLQHDFKPDESECRDVHITT 351

Query: 329 DADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSA 388
             ++  V++  + +  +I A+ +G+ SE LAQALQEKV ALLLLSQQEERHL E NVN+A
Sbjct: 352 VVESCQVTKLAEASIANIMAESRGDTSEALAQALQEKVGALLLLSQQEERHLHEENVNAA 411

Query: 389 LQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVI 448
           LQ+K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L++K+     EE         RI  
Sbjct: 412 LQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQSLRDKLSGTSGEETTETSG---RIGF 468

Query: 449 P-ERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENAT 507
             E++GRL+N+ KK+ + RWI       + G + LNI    ++    +ID++RM++E A 
Sbjct: 469 SNEKEGRLKNMWKKSYINRWID----PSSRGGSHLNIEADYAS----NIDYSRMKVEYAA 520

Query: 508 LKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSL 567
           +KE+LE+M HL +SIRRLRL+L KVKE   +E T  S    + +I+ EA  +KTALG S+
Sbjct: 521 IKENLESMGHLTTSIRRLRLALLKVKESNDTETTARSCEVAIANILVEATHLKTALGISI 580

Query: 568 PVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKD 623
           P+SW AESD  S+++          G+SS E+ DSVSAAGFEMVEL+ILAA+I+K+
Sbjct: 581 PISWSAESDMESVSD----------GESSCERTDSVSAAGFEMVELVILAAEIMKE 626

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
TAIR|locus:2064247	652	MEE13 "AT2G14680" [Arabidopsis	0.909	0.878	0.502	8.8e-134
UNIPROTKB|F1PRS3	1869	CENPF "Uncharacterized protein	0.620	0.209	0.218	1.7e-09
UNIPROTKB|F8W7S5	751	RRBP1 "Ribosome-binding protei	0.6	0.503	0.257	4e-09
UNIPROTKB|F1N1F8	3077	CENPF "Uncharacterized protein	0.592	0.121	0.207	8.2e-09
UNIPROTKB|Q9P2E9	1410	RRBP1 "Ribosome-binding protei	0.6	0.268	0.257	9.2e-09
UNIPROTKB|E2QUT0	1819	KIF20B "Uncharacterized protei	0.622	0.215	0.235	1.6e-08
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.725	0.306	0.214	3.4e-08
UNIPROTKB|Q02224	2701	CENPE "Centromere-associated p	0.595	0.138	0.200	4e-08
MGI|MGI:104667	794	Hmmr "hyaluronan mediated moti	0.620	0.492	0.212	6.8e-08
UNIPROTKB|E3W9A2	1427	CLIP1 "Uncharacterized protein	0.611	0.269	0.215	1.4e-07

TAIR|locus:2064247 MEE13 "AT2G14680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
 Identities = 310/617 (50%), Positives = 398/617 (64%)

Query:    30 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 89
             A LEQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQ
Sbjct:    54 ASLEQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQ 113

Query:    90 GCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 149
             G +AAAF+ERD SVM          +MSQK +E + RLEELSS+ +  K+ N TL+ DL 
Sbjct:   114 GSVAAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLA 173

Query:   150 KQEELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
             K EE   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++A
Sbjct:   174 KLEEQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAA 233

Query:   209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 268
             LE EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQ
Sbjct:   234 LEGELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQ 293

Query:   269 LRVHVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHIN 327
             LR +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+ 
Sbjct:   294 LRAYIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMT 350

Query:   328 NDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNS 387
                ++  V++  + +   I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+
Sbjct:   351 TVVESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNA 410

Query:   388 ALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE-----KIC------------- 429
             ALQ+K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L+E     K C             
Sbjct:   411 ALQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQSLREHGTFCKWCKPSFKTNFALSSV 470

Query:   430 -NEMK--EEKVLAGNGEKRIVIPERDGXXXXXXXXXXXXXWIGTLDFSGNEGQADLNIRE 486
              N+M    E+   GN  + ++  E+DG             WI   D S + G + LN   
Sbjct:   471 LNKMSGTREEESTGNSGRIVISNEKDGRLKNMWKKSYINRWI---DPS-SRGGSHLNTEA 526

Query:   487 GISTRRSNSIDFARMRIENATLKESLENMDHXXXXXXXXXXXXXKVKELATSEDTIGSMS 546
               +   SN I+++RM++E A +KE+LE+M H             KVKEL  +E T  S  
Sbjct:   527 DYA---SN-IEYSRMKVEYAAIKENLESMGHLTTSIRRLRLALLKVKELNDTETTARSCE 582

Query:   547 ETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAA 606
               + +I+ EA  +KTALG S+P+SW AESD  S+   TD       G+SS E+ DSVSAA
Sbjct:   583 VAIANILVEATHLKTALGISIPISWSAESDIESV---TD-------GESSCERTDSVSAA 632

Query:   607 GFEMVELLILAAQILKD 623
             GFEMVEL+ILAA+I+K+
Sbjct:   633 GFEMVELVILAAEIMKE 649

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

UNIPROTKB|F1PRS3 CENPF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 96/440 (21%), Positives = 208/440 (47%)

Query:    33 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEV---IKNMEAEKQVKFFQ 89
             ++ I  L+++++    E + L  +L    + K +L DL + ++   I+ +E+ +      
Sbjct:   702 QKAITCLEEELSVVTSERNQLHGQLDTLSKEKKEL-DLMSEKMKQKIQELESREDECLHP 760

Query:    90 GCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATL-RFDL 148
               MA A   +D   +          L+     E  TRL+E   +++E   Q  +L + +L
Sbjct:   761 SDMAGAEV-KDKMQLVQRLSSDVTQLL-----EDNTRLQE-QLQSLEKDSQALSLVKSEL 813

Query:   149 EKQ-EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYIS 207
             E Q E+LN+  KE +++  E  Q  L   E+  E       L+ A M        +  +S
Sbjct:   814 EIQIEQLNKE-KESLSRESESLQARLH--ESEHEKLTVAKALEGALM---EKGEVAVRLS 867

Query:   208 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHS 267
             + ++E+ + R  +E L+ ++    + + H+ + +RE E+K       I N   EL++   
Sbjct:   868 STQEEVHQLRKGIEKLRIRIEADEKKQLHVLEKLRESERKADALQDKIENLERELQMSEE 927

Query:   268 QLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHIN 327
                + ++++ E  ++ ++++   +E  T+   D+     T  +++E  + + + +   ++
Sbjct:   928 NQELVILDA-ENSKAEVETLKTQMELTTKSLKDLESDLVTVRFEKENLIKQLQDKQGQVS 986

Query:   328 NDADTNLVS---QRNDPAYCDIEADRKGEAS----ETLAQALQEKVAALLLLSQQEERHL 380
              + DT L S   Q  +     IE   +  A+     T  + L E++AAL     QE + +
Sbjct:   987 -ELDTLLSSFKGQLEEKEREKIEMKEESRAALEMLRTQLKELNEEIAALC--HDQEIQKV 1043

Query:   381 LERNVNSALQKKIEELQRNLFQVTTEKVKALME---------LAQLKQ-DYQ--LLQEKI 428
              E++++  +Q+ I +L+ N     TEK+KA +E         L +LK+ ++Q  LL++++
Sbjct:  1044 KEQSLDPLVQE-IHQLRNN-----TEKLKARLEADEKEQLRVLGKLKETEHQASLLKDRV 1097

Query:   429 CNEMKEEKVLAGNGEKRIVI 448
                ++ E  ++G  ++ +V+
Sbjct:  1098 -ESLERELEISGKNQECVVL 1116

GO:0045502 "dynein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|F8W7S5 RRBP1 "Ribosome-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 105/408 (25%), Positives = 176/408 (43%)

Query:    25 VCISKAGLEQEIEIL--KQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEA- 81
             V I K  LE++ ++L  +Q+ AA A+  S L+E   E    K + A    A+V K + A 
Sbjct:    36 VAILKRQLEEKEKLLATEQEDAAVAK--SKLRELNKEMAAEKAKAA-AGEAKVKKQLVAR 92

Query:    82 EKQVKFFQGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKK-- 139
             E+++   Q  M A++ E    V           L  Q  N   T+L  L  EN  L+   
Sbjct:    93 EQEITAVQARMQASYREHVKEVQQLQGKIRT--LQEQLENGPNTQLARLQQENSILRDAL 150

Query:   140 QNATLRFD------LEK-QEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSA 192
               AT + +      L K ++EL++  KE++ K   +RQ   E    + E K A       
Sbjct:   151 NQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQD--EQQRKALEAKAAAFEKQVL 208

Query:   193 EMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSD 252
             ++ + +  S       L DE+ +     ++  + LR   E     ++ + EL  K+  S+
Sbjct:   209 QLQASHRESEEALQKRL-DEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 267

Query:   253 KFISNAIAELRLCHSQLR-VHVVNSLEEGRSHIKSISDVIEE-KTQHCDDVIRGQNTGTY 310
               + +   EL   H QL+     NS    R  I+SI  ++E  + +   DV   Q     
Sbjct:   268 AEVRSKCEELSGLHGQLQEARAENSQLTER--IRSIEALLEAGQARDAQDVQASQAEAD- 324

Query:   311 QRETKLDEFECRDVHINNDA-DTNLVSQRNDPAYCDI-EADRKG-EASETLAQALQEKVA 367
             Q++T+L E E +   +  +A +     ++      D+ E + K  EA  T  QA +EK+ 
Sbjct:   325 QQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLL 384

Query:   368 ALLLLSQQEERHL--LERNVNSALQKKIEELQRNLFQVTTEKVKALME 413
             +L    ++ E+ L  +E     AL   + EL     Q  TE ++ L E
Sbjct:   385 SLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKE 432

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1N1F8 CENPF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 8.2e-09, P = 8.2e-09
 Identities = 88/424 (20%), Positives = 188/424 (44%)

Query:    32 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGC 91
             L + IE L+ +I A  ++  ++ E+L E+ R    L D      ++ +E E Q+   +  
Sbjct:  2080 LRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDK-----VETLERELQMA--EEN 2132

Query:    92 MAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 151
                   + +N             LM+++  + +  L  + SE   L KQ    +    + 
Sbjct:  2133 QELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASEL 2192

Query:   152 EELNESFKEVINK-------FYEIRQQSLEVLETSWEDKCA--CLLLDSAEMWSFNDTST 202
             + L  S K ++ +         E  + ++E+L+T   +       L D  E W   + S 
Sbjct:  2193 DTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQS- 2251

Query:   203 SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIA-- 260
                + +   E+++ R+++E    KL++ L+I+   +  + E  K+  H   F+ + +   
Sbjct:  2252 ---LDSPAQEVQQLRNNIE----KLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENL 2304

Query:   261 --ELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHC-----DDV-IRGQNTGTYQR 312
               EL+L   + + HV    E+ ++ ++++   +E+  Q+      D V IR +      +
Sbjct:  2305 ERELKLS-GENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDL-TK 2362

Query:   313 ETKLDEFECRDVHINNDADTNLVSQRN-DPAYCDIEADRKGEASETLAQALQEKVAALLL 371
             E + ++    ++   N +  NL+ ++  +      E+    E  +T  + L EK+AAL  
Sbjct:  2363 ELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELNEKMAALG- 2421

Query:   372 LSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNE 431
              + QE R + E++++S    +++ L+        EK + L +L   K +Y +LQ  + N+
Sbjct:  2422 -NDQETRKVKEQSLSS----QVDSLEH-------EKAQLLQDLDDAKSNYMILQSSV-ND 2468

Query:   432 MKEE 435
             + +E
Sbjct:  2469 LIQE 2472

GO:0051310 "metaphase plate congression" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016202 "regulation of striated muscle tissue development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

UNIPROTKB|Q9P2E9 RRBP1 "Ribosome-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 105/408 (25%), Positives = 176/408 (43%)

Query:    25 VCISKAGLEQEIEIL--KQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEA- 81
             V I K  LE++ ++L  +Q+ AA A+  S L+E   E    K + A    A+V K + A 
Sbjct:   695 VAILKRQLEEKEKLLATEQEDAAVAK--SKLRELNKEMAAEKAKAA-AGEAKVKKQLVAR 751

Query:    82 EKQVKFFQGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKK-- 139
             E+++   Q  M A++ E    V           L  Q  N   T+L  L  EN  L+   
Sbjct:   752 EQEITAVQARMQASYREHVKEVQQLQGKIRT--LQEQLENGPNTQLARLQQENSILRDAL 809

Query:   140 QNATLRFD------LEK-QEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSA 192
               AT + +      L K ++EL++  KE++ K   +RQ   E    + E K A       
Sbjct:   810 NQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQD--EQQRKALEAKAAAFEKQVL 867

Query:   193 EMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSD 252
             ++ + +  S       L DE+ +     ++  + LR   E     ++ + EL  K+  S+
Sbjct:   868 QLQASHRESEEALQKRL-DEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 926

Query:   253 KFISNAIAELRLCHSQLR-VHVVNSLEEGRSHIKSISDVIEE-KTQHCDDVIRGQNTGTY 310
               + +   EL   H QL+     NS    R  I+SI  ++E  + +   DV   Q     
Sbjct:   927 AEVRSKCEELSGLHGQLQEARAENSQLTER--IRSIEALLEAGQARDAQDVQASQAEAD- 983

Query:   311 QRETKLDEFECRDVHINNDA-DTNLVSQRNDPAYCDI-EADRKG-EASETLAQALQEKVA 367
             Q++T+L E E +   +  +A +     ++      D+ E + K  EA  T  QA +EK+ 
Sbjct:   984 QQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLL 1043

Query:   368 ALLLLSQQEERHL--LERNVNSALQKKIEELQRNLFQVTTEKVKALME 413
             +L    ++ E+ L  +E     AL   + EL     Q  TE ++ L E
Sbjct:  1044 SLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKE 1091

GO:0015031 "protein transport" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=NAS

GO:0007165 "signal transduction" evidence=NAS

GO:0004872 "receptor activity" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|E2QUT0 KIF20B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 103/437 (23%), Positives = 188/437 (43%)

Query:    32 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVK----- 86
             LEQ+IE L+ ++  C  EN+ L+ E  E  + KG L       +I+ ++ E Q K     
Sbjct:  1077 LEQQIEKLQAELKGCMDENNRLKIEEREN-KNKGDLLK-EKENLIQQLKQELQEKNTSLD 1134

Query:    87 -----FFQGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFN-EFQTRLEE--LSSENIELK 138
                    +G  A +   +D +            L + K       +LE+  L  E+I LK
Sbjct:  1135 VQVQHVVEGKRALSELTQDITCYKVKIKELEAILETHKDECSHSAKLEQEILEKESIILK 1194

Query:   139 KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFN 198
              +     F    Q+ +  + K++  +  +++++ +  L ++ +D    L L   E     
Sbjct:  1195 LERNLKDFQANLQDSIKNT-KDLSEREVKLKEE-ISQLTSNLQDAKHSLKLKEEE----K 1248

Query:   199 DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNA 258
             +TS       L++EL  + + ++NL++ L+   E    LK+ + + +K+I    K +S  
Sbjct:  1249 ETSWHT-AEKLKEELSASSALIQNLKADLQRKEEDYAELKEKLADAKKQIEQVQKEVSVM 1307

Query:   259 IAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDE 318
               E +L   +++VH    LE+ ++      D+ +   Q   + +  QN      E  + +
Sbjct:  1308 RDEEKLL--RIKVH---ELEKKKNQCSQEIDIKQRTIQQLKEQLSNQNV-----EEAIQQ 1357

Query:   319 FE--CRDVHINN----DADTNLVSQRNDPAYCDIEADRKGEASETLAQALQ---EKVAAL 369
             +E  C+D+++      D    L  Q    A  D   + K E +E LA  L+   EK   L
Sbjct:  1358 YERVCKDLNVKEKIIEDMRMTLEEQEETQAEQDRVLEAKLEEAEGLATELEKWKEKCKDL 1417

Query:   370 LLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKIC 429
                S Q     LE N +  L +K+ +LQ  L Q +  K KA  +    ++   ++Q K  
Sbjct:  1418 EAKSNQRSNKELEDNTD-VLSEKLSKLQDEL-QESEHKYKAERKKWLEEKMMLIIQAKEA 1475

Query:   430 NEM--KEEKVLAGNGEK 444
               +  KE K  A + E+
Sbjct:  1476 ENLRNKEMKKYAEDRER 1492

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 165 (63.1 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 110/512 (21%), Positives = 226/512 (44%)

Query:   116 MSQKFNEFQTRLEELSSENIELKKQ--NATLRFDLEKQEELNESFKEVINKFYEIRQQSL 173
             +S + NE   +++ELS ++I+ +K+  N+T   D + Q +LN+   E++ K  +I Q   
Sbjct:   392 ISNQLNEKDNKIQELSKQSIDKQKEIENSTSSSD-QLQLKLNDISNELLEKLNDINQ--- 447

Query:   174 EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEI 233
               L    +DK   +L  + ++    +   SK  + L   +E   SS + L+ KL      
Sbjct:   448 --LSNKLQDKENQILEINNKLNEKENQLISKD-NQLNQLIENNESSSDELKLKL------ 498

Query:   234 ENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEE 293
              N L   ++E ++K++++   I+   + L    +++   + N+ +     +K   + + +
Sbjct:   499 -NQLSDELQEKDEKLLNNQSVINELQSNLNENQNKINELIENN-QSSSDELKLKLNQLSD 556

Query:   294 KTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADT-NLVSQRNDPAYCDIEADRKG 352
             K Q  D+ ++   +   +R+ K+D+ +  D ++N   D  N + + N+ +     +D   
Sbjct:   557 KLQEKDEKLKSLESSIIERDEKIDQLQ--D-NLNEKQDKINELVENNESS-----SDELQ 608

Query:   353 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEEL----QRNLFQVTTEKV 408
                  L+  LQEK   LL  + Q   + L+ N+N   Q KI EL    Q +  ++ ++ +
Sbjct:   609 SKLIQLSDQLQEKDEKLL--NNQSIINELQSNLNEN-QNKINELIENNQSSSDELNSKLI 665

Query:   409 KALMELAQLKQDYQLLQEKIC-NEMKEEKVLAGN----GEKRIVIPERDGXXXXXXXXXX 463
             K   EL    ++ + L+  I  N+ K ++++  N     E +  + E++           
Sbjct:   666 KLSDELKDKNENVRSLETSIIENQDKLDQLIQSNQVTVNELQSKLNEKEININQLIENNQ 725

Query:   464 XXXWIGTLDFSGNEGQADLNIREGISTRRSNSIDF-ARMRIENATLKESLENMDHXXXXX 522
                 +  L    NE Q ++N  + I   +S+S +  +++  ++  + E    ++      
Sbjct:   726 SS--LDELQSKLNEKQNEIN--QLIENNQSSSDELQSKLNEKHQEISELQSKLNELIENN 781

Query:   523 XXXXXXX-XKVKELATSEDTIGSMSETLDDIITE--AKLVKTALGS--SLPV--SWIAES 575
                      K+ +L+          ++LD II E   KLV+    +  SL    S + E 
Sbjct:   782 ESSSDELQSKLIQLSDELKEKDEKLKSLDSIIIENQEKLVQLTKSNQDSLDELQSKLNEK 841

Query:   576 DDGSINE---NTDSESGDIHGDSSNEKMDSVS 604
              +  INE   N  S S ++     NEK + ++
Sbjct:   842 QN-EINELIENNQSSSNELQS-KLNEKQNEIN 871

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 85/423 (20%), Positives = 197/423 (46%)

Query:    33 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAA-EVIKNME--AEKQVKFFQ 89
             ++ I+ L++ ++    +  N Q+      +++ ++  LH   E++ N++  +E Q    +
Sbjct:  1248 QETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNE 1307

Query:    90 -GCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 148
                +      +D++ +           +++KF E Q  ++ L+ E   LK    T++  L
Sbjct:  1308 LELLTEQSTTKDSTTLARIEMERLR--LNEKFQESQEEIKSLTKERDNLK----TIKEAL 1361

Query:   149 E-KQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST----- 202
             E K ++L E  +E + K  E + +  + L    +D     ++   E +   D++      
Sbjct:  1362 EVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEI 1421

Query:   203 -----SKYISALEDELEKTRSSVENLQSKLRMGLEIEN-HLKKSVRELEKKIIHSDKFIS 256
                  SK +    DE++      ++LQ +L+  L+ E+  LK++++E+  K + +++   
Sbjct:  1422 EMLGLSKRLQESHDEMKSVAKEKDDLQ-RLQEVLQSESDQLKENIKEIVAKHLETEE--- 1477

Query:   257 NAIAELRLCHSQLRVH--VVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRET 314
                 EL++ H  L+     +N L    S  ++    I+++ +  +D ++ +    Y++E 
Sbjct:  1478 ----ELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEE 1533

Query:   315 KLDEFECRDVH--INNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLL 372
             + +  +  +V   +N         +  D A   IE+ +  E +  L ++ QE++   +++
Sbjct:  1534 QFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIES-KMLELTNRLQES-QEEIQ--IMI 1589

Query:   373 SQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEM 432
              ++EE     + V  ALQ + ++L+ N     T+++ A M+ +Q K+ YQ L+    NE 
Sbjct:  1590 KEKEEM----KRVQEALQIERDQLKEN-----TKEIVAKMKESQEKE-YQFLKMTAVNET 1639

Query:   433 KEE 435
             +E+
Sbjct:  1640 QEK 1642

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=TAS

GO:0000776 "kinetochore" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0000779 "condensed chromosome, centromeric region" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051382 "kinetochore assembly" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=IMP

GO:0005874 "microtubule" evidence=IDA

GO:0043515 "kinetochore binding" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=TAS

GO:0000089 "mitotic metaphase" evidence=TAS

GO:0007079 "mitotic chromosome movement towards spindle pole" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

MGI|MGI:104667 Hmmr "hyaluronan mediated motility receptor (RHAMM)" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 92/433 (21%), Positives = 183/433 (42%)

Query:    26 CISKAGLE--QEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEK 83
             C ++  LE  QEI     ++  C  + + L+E+L E  R   ++  L  + + +N+   K
Sbjct:   229 CETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDR---EILSLKQS-LEENITFSK 284

Query:    84 QVKFFQGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKK-QNA 142
             Q++           ERDN V              Q   E +  LE    E ++ K+ Q+ 
Sbjct:   285 QIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTE-RLALERQEYEKLQQKELQSQ 343

Query:   143 TLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST 202
             +L   L++++EL+   ++ +  F E       V +   E K A   LD+ +     +  +
Sbjct:   344 SL---LQQEKELSARLQQQLCSFQEEMTSEKNVFKE--ELKLALAELDAVQQ---KEEQS 395

Query:   203 SKYISALEDELEKTRSSVENLQSKLR-MGLEIENHLKKSVRELEKKIIHSDKFISNAIAE 261
              + +  LE+E + T   +  L + LR   +E+E H+    + +   +I  +K+   A   
Sbjct:   396 ERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAQAI---LIAQEKYNDTA-QS 451

Query:   262 LRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFEC 321
             LR   +QL   V     +    ++ ++  +E + +  +D  +     T Q E++ +++  
Sbjct:   452 LRDVTAQLE-SVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYND 510

Query:   322 RDVHINN-DADTNLVSQR-NDPAYC--DIEADRKGEASETLAQ---------ALQEKVA- 367
                 + +  A    V ++ ND A    D+ A  +   S TL +          LQEKVA 
Sbjct:   511 TAQSLRDVTAQLESVQEKYNDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAM 570

Query:   368 ALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKA-----LMELAQLKQDYQ 422
             A   +   +++ L   + N    + +++LQ N   +  E++K      L ++  LK   +
Sbjct:   571 AEKSVEDVQQQILTAESTNQEYARMVQDLQ-NRSTLKEEEIKEITSSFLEKITDLKNQLR 629

Query:   423 LLQEKICNEMKEE 435
                E    +++E+
Sbjct:   630 QQDEDFRKQLEEK 642

GO:0005540 "hyaluronic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E3W9A2 CLIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 94/436 (21%), Positives = 197/436 (45%)

Query:    33 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAE----VIKNMEA--EKQVK 86
             ++E+++L+      ++EN +L+ +L  A +    +  L  ++    +  + +A  E +V 
Sbjct:   574 QKELKVLQAATEKLSKENESLKSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVS 633

Query:    87 FFQGC--MAAAFAERDNSV--MXXXXXXXXXXLMSQKFNEFQTRLEELSSENIEL----- 137
             F +G     A FAE    +  M          L +++ +E     +EL +   +L     
Sbjct:   634 FSKGVGTETAEFAELKTQIEKMRLDYQQEIENLQNKQDSERSAHTKELEALRAKLMQVIK 693

Query:   138 KKQNA--TLRFDLEKQEELN-ESFKEVINKFYE--IRQQSLEVLETSWEDKCACLLLDSA 192
             +K+N+   ++  L+K EE +    ++ +NK  E  ++ + LEVL+     KC        
Sbjct:   694 EKENSLEAIQSKLDKAEEQHLVEMEDTLNKLQEAELKVKELEVLQA----KCN------- 742

Query:   193 EMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG-LEIENHLKKSVRELEKKI--I 249
             E     D  TS+ + A E++L    S ++ LQ     G LEIEN L++ +   EK+I  +
Sbjct:   743 EQTKVIDHFTSQ-LKAAEEKL----SDLDALQKASSEGKLEIEN-LRQQLEAAEKQIKNL 796

Query:   250 HSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIR--GQNT 307
               +K   ++ A       Q +  ++N+L+E  S +  + + +E++ Q   +      +  
Sbjct:   797 EIEKDAESSKASSITKELQGKELMLNNLQENLSEVSQVKEALEKELQTLKEKFADASEEA 856

Query:   308 GTYQRETK--LDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQA---L 362
              ++QR  +  +++   ++   N    + L   R +    + +   + E  E L +A   L
Sbjct:   857 VSFQRSMQETVNKLHQKEEQFNA-LSSELEKLRENLTDMEAKFRERDEREEQLIKAKEKL 915

Query:   363 QEKVAALLLLSQQEERHLLERNVNSALQKK-IEELQRNLFQVTTEKVKALME-LAQLKQD 420
             +  +AA++ +S      L + N    L+++ +EELQ  L +   E    L + + ++   
Sbjct:   916 ENDIAAIMKMSGDNSSQLTKMNDELRLKERNVEELQLKLTKAN-ENASLLQKSIGEVTLK 974

Query:   421 YQLLQEKICNEMKEEK 436
              +  Q++   + +EEK
Sbjct:   975 AEQSQKEAAKKHEEEK 990

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0044354 "macropinosome" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001484001 SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (658 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	630
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 46/218 (21%), Positives = 98/218 (44%), Gaps = 18/218 (8%)

Query: 29  KAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFF 88
            + LEQ+ +IL++++A   R+   L+ +L E      +LA+  A       E E++++  
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA-------ELEEKLEEL 349

Query: 89  QGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 148
           +  + +  A       E E+ + + E +  +  E + +LE L S+  +L+ Q A+L  ++
Sbjct: 350 KEELESLEA-------ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

Query: 149 EKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 208
           E+ E   E  ++   +  +  ++ L+ LE +   +    L +  E          + +  
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE----LEELQEELER 458

Query: 209 LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK 246
           LE+ LE+ R  +E  +  L         L+  +  LE+
Sbjct: 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 15/225 (6%)

Query: 28  SKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKF 87
           + A L++EIE L++K  A   E   L+EEL EA R    L     +   +    E++++ 
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832

Query: 88  FQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFD 147
            +  +     + D    E E+ +++ E + ++  E +   EEL  E  EL+++   L  +
Sbjct: 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892

Query: 148 LEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYIS 207
           L + E      KE I K    R + LE        K   L ++  E+    +    +Y  
Sbjct: 893 LRELESELAELKEEIEK-LRERLEELEA-------KLERLEVELPEL---EEELEEEYED 941

Query: 208 ALEDELEKTRSSVENLQSKLRM----GLEIENHLKKSVRELEKKI 248
            LE ELE+    +E     L       +E    +++   EL+ + 
Sbjct: 942 TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQR 986

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	630
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.51
PRK09039	343	hypothetical protein; Validated	95.27
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.65
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.52
PRK04863	1486	mukB cell division protein MukB; Provisional	91.98
PRK02224	880	chromosome segregation protein; Provisional	91.75
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	91.68
PRK11637	428	AmiB activator; Provisional	91.34
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	90.73
PRK02224	880	chromosome segregation protein; Provisional	89.77
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.38
PRK04778	569	septation ring formation regulator EzrA; Provision	89.01
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	88.67
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	88.58
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	88.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	87.54
PHA02562	562	46 endonuclease subunit; Provisional	87.11
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	85.13
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	84.9
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	84.9
PRK10884	206	SH3 domain-containing protein; Provisional	84.73
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	84.43
PF00038	312	Filament: Intermediate filament protein; InterPro:	84.23
PRK04863	1486	mukB cell division protein MukB; Provisional	83.58
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	83.11
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.92
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	82.15
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	81.58
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	81.09
PRK11637	428	AmiB activator; Provisional	80.96
PRK03918	880	chromosome segregation protein; Provisional	80.69
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	80.63
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	80.09

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.51  E-value=11  Score=48.10  Aligned_cols=385  Identities=22%  Similarity=0.238  Sum_probs=182.4

Q ss_pred             hhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHH-HH
Q 006796           29 KAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-AE  107 (630)
Q Consensus        29 tA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmE-aE  107 (630)
                      ...++.+|+.++.++..=+|.+++|...+..+=+=+.+|-+-+--+...-.++++++.=--.-++++-+.=+..+.. .|
T Consensus      1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~e 1375 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLE 1375 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777777777766655443333332222222223334444433333333333333333332 33


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccc---c
Q 006796          108 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK---C  184 (630)
Q Consensus       108 KaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K---c  184 (630)
                      -..|.-...-+.+.+.+++++.+...+...++..-.||.++..+.--++....++. |.+-.+...+-.=..|..+   -
T Consensus      1376 elee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~-~le~k~k~f~k~l~e~k~~~e~l 1454 (1930)
T KOG0161|consen 1376 ELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA-ALEKKQKRFEKLLAEWKKKLEKL 1454 (1930)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445567788899999999999999988888887777665444432222111 2222222222111334433   3


Q ss_pred             ccccccccccccccCcchHHHHHHHHHHHH---HHHHHHHHHHhhhhhhHHHHHH-------hHHhHHHHHHh----hhh
Q 006796          185 ACLLLDSAEMWSFNDTSTSKYISALEDELE---KTRSSVENLQSKLRMGLEIENH-------LKKSVRELEKK----IIH  250 (630)
Q Consensus       185 s~LL~Ds~~~WSfn~tStskyisALEeEle---~lr~si~~LQskLR~GLEIEnH-------Lkk~vr~LeKk----qi~  250 (630)
                      +..++.....|.=-+|...++-.+|++-++   .++..-.+|++.+.=--.=.+-       |++..|.||..    |.-
T Consensus      1455 ~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~a 1534 (1930)
T KOG0161|consen 1455 QAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAA 1534 (1930)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666677667777777666666543   3333333333332210000001       22222333222    111


Q ss_pred             hHHHH------HHHHHHHHHhhhhhHHHHHHhhhhcc-----------hhhhhHHHHHHhhhcccccccc-----ccccC
Q 006796          251 SDKFI------SNAIAELRLCHSQLRVHVVNSLEEGR-----------SHIKSISDVIEEKTQHCDDVIR-----GQNTG  308 (630)
Q Consensus       251 ~dk~i------~ngis~Lq~~h~~~R~~Im~lL~ee~-----------s~i~s~v~~ieekl~~~~n~~~-----E~n~~  308 (630)
                      ++..-      ....--++--+.+.|.+|..-|.+-.           ..|.++.+.+++..+.+..+.+     |.. .
T Consensus      1535 LeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~d-i 1613 (1930)
T KOG0161|consen 1535 LEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGD-I 1613 (1930)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcc-h
Confidence            11111      11111134446666666666553211           1222233333322211111100     000 0


Q ss_pred             CCccccccccccccceeeccCCCCccccCCCCCccchhhhcccCCchHHHHHHH--HHHHHHHH---------hhchHHH
Q 006796          309 TYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQAL--QEKVAALL---------LLSQQEE  377 (630)
Q Consensus       309 ~pq~e~~~~e~ecrDVHvs~d~~p~~~~k~~~p~~~~~~~d~~~d~s~aLAQAL--qEKveALl---------LlSQqeE  377 (630)
                      +| =+++++.+.-.   .....++...-...+|.+.+.+-|-.....+++||..  ..|.+||-         +=+..-.
T Consensus      1614 ~e-lE~~ld~ank~---~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Ra 1689 (1930)
T KOG0161|consen 1614 NE-LEIQLDHANKA---NEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERA 1689 (1930)
T ss_pred             HH-HHHHHHHHHHh---hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 01111211111   1112223333344555555666666666677776542  23444331         2223345


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhh---hhhchHHHHHHHHHHhHHHHHHH
Q 006796          378 RHLLERNVNSALQKKIEELQRNL---FQVTTEKVKALMELAQLKQDYQL  423 (630)
Q Consensus       378 R~llE~~~n~~Lq~~ieeLQrNl---~QVt~EKVkaLmELAqLkq~y~l  423 (630)
                      |-.+|...+..    .|.++...   +..+++|-|.=-+|++|..++..
T Consensus      1690 rr~aE~e~~E~----~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee 1734 (1930)
T KOG0161|consen 1690 RRQAELELEEL----AERVNELNAQNSSLTAEKRKLEAEIAQLQSELEE 1734 (1930)
T ss_pred             HHhhHHHHHHH----HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            55666655544    66666655   55788999999999999988765

>PRK09039 hypothetical protein; Validated

Probab=95.27  E-value=2.2  Score=44.83  Aligned_cols=86  Identities=22%  Similarity=0.161  Sum_probs=48.8

Q ss_pred             HHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 006796           67 LADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRF  146 (630)
Q Consensus        67 LAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~  146 (630)
                      |+++-+-+-+.+.+++..|.=.+....+|=++|+.    .+.+-.   .......+.+.|+..++.++..+|..-...+.
T Consensus        65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~----Le~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~  137 (343)
T PRK09039         65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSR----LQALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALA  137 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            66666666666666666666666665555555541    111100   01112335666777777777777766666666


Q ss_pred             hHHHHHHhhHhHH
Q 006796          147 DLEKQEELNESFK  159 (630)
Q Consensus       147 dl~~~~eq~e~~~  159 (630)
                      +...+..|.+.+.
T Consensus       138 ~V~~L~~qI~aLr  150 (343)
T PRK09039        138 QVELLNQQIAALR  150 (343)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.65  E-value=12  Score=37.41  Aligned_cols=73  Identities=15%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcch
Q 006796           30 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS  102 (630)
Q Consensus        30 A~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~s  102 (630)
                      ..++.+|..|...+..++.++-.|+-++.-+..--..+-.-+..+...+..+|.++.=+..-+-.+.+.|...
T Consensus        50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~l  122 (312)
T PF00038_consen   50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDL  122 (312)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHH
Confidence            3466666666677777777777776666655544433333355667777777777777776666666666543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR00606 rad50 rad50

Probab=92.52  E-value=13  Score=44.90  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=19.3

Q ss_pred             hhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796           31 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL   70 (630)
Q Consensus        31 ~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL   70 (630)
                      .++..++.++.....|..+-..+++++.+.+.+...+..+
T Consensus       228 ~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l  267 (1311)
T TIGR00606       228 SKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL  267 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555545455555555555444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.98  E-value=38  Score=42.49  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=23.3

Q ss_pred             hHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHH
Q 006796           25 VCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL   70 (630)
Q Consensus        25 ~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdL   70 (630)
                      .+--++|..++.+..+++|...-..-..+.+++   --|+.++..|
T Consensus       284 liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL---~ELe~rL~kL  326 (1486)
T PRK04863        284 HLEEALELRRELYTSRRQLAAEQYRLVEMAREL---AELNEAESDL  326 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            444555666666666665555544444444444   3456666666

>PRK02224 chromosome segregation protein; Provisional

Probab=91.75  E-value=28  Score=39.69  Aligned_cols=27  Identities=22%  Similarity=0.585  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796          202 TSKYISALEDELEKTRSSVENLQSKLR  228 (630)
Q Consensus       202 tskyisALEeEle~lr~si~~LQskLR  228 (630)
                      ....+..++++++.++..++.|...+.
T Consensus       658 ~~~~~~~l~~~l~~~~~~~~~l~~~i~  684 (880)
T PRK02224        658 AEEYLEQVEEKLDELREERDDLQAEIG  684 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777777664

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=91.68  E-value=22  Score=41.88  Aligned_cols=74  Identities=24%  Similarity=0.290  Sum_probs=42.9

Q ss_pred             HHHHHHHHhhhhhcccchHHHHHHH----HHhHHHHHHHhH-HHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhH
Q 006796           36 IEILKQKIAACARENSNLQEELSEA----YRIKGQLADLHA-AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK  110 (630)
Q Consensus        36 IE~LkkKl~~c~ReN~NLQeELsEA----YRiK~qLAdLh~-ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaK  110 (630)
                      ..-++-...-.-.+-++||+|| .+    ||+..++-.-.+ .+-...  +++    -||-+....||||....|.+...
T Consensus        62 lr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~rl~~E~er~~~El~~lr  134 (775)
T PF10174_consen   62 LRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE--LDK----AQEQFERLQAERERLQRELERLR  134 (775)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh--hhh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344445556888888 66    666666543321 111111  332    36778888899999999987766


Q ss_pred             HHHHHH
Q 006796          111 EKEELM  116 (630)
Q Consensus       111 E~Ee~m  116 (630)
                      ..-+.|
T Consensus       135 ~~lE~~  140 (775)
T PF10174_consen  135 KTLEEL  140 (775)
T ss_pred             HHHHHH
Confidence            443333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK11637 AmiB activator; Provisional

Probab=91.34  E-value=22  Score=37.74  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=18.5

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhcccchHHHH
Q 006796           26 CISKAGLEQEIEILKQKIAACARENSNLQEEL   57 (630)
Q Consensus        26 ~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeEL   57 (630)
                      +.-++.++++++.+++++..--.+-..++.++
T Consensus        39 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~   70 (428)
T PRK11637         39 SAHASDNRDQLKSIQQDIAAKEKSVRQQQQQR   70 (428)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456788888888886654433333333333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=90.73  E-value=52  Score=40.89  Aligned_cols=139  Identities=19%  Similarity=0.075  Sum_probs=93.1

Q ss_pred             hhhhHHHHHHHHHHHhhhhh-cccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHH
Q 006796           29 KAGLEQEIEILKQKIAACAR-ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE  107 (630)
Q Consensus        29 tA~LEQeIE~LkkKl~~c~R-eN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaE  107 (630)
                      .+.|++.|+.++.....|-| +--=+|.+.+++-+.=++..+.-..--..|.+++.+.+=-|-..+.++-+-+.+.-+.-
T Consensus       467 ~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk  546 (1317)
T KOG0612|consen  467 DKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRK  546 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            35889999999998888887 22337888888887777777666666778888888888889889999888888888877


Q ss_pred             HhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 006796          108 KAKEKEELMSQKFNEFQTR---LEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ  170 (630)
Q Consensus       108 KaKE~Ee~m~qkf~~f~~R---~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~  170 (630)
                      ...+.+..|..++..-.++   ..++...+..+.+.+..++--+..+++.   ..+....++.+|.
T Consensus       547 ~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~---k~~ls~~~~~~~~  609 (1317)
T KOG0612|consen  547 QLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEES---KSKLSKENKKLRS  609 (1317)
T ss_pred             HHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            7788888888777654433   2334444444444333333333222222   2345555565554

>PRK02224 chromosome segregation protein; Provisional

Probab=89.77  E-value=42  Score=38.35  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006796          205 YISALEDELEKTRSSVENLQSKLRMG  230 (630)
Q Consensus       205 yisALEeEle~lr~si~~LQskLR~G  230 (630)
                      .++.|+.+++.++..++.+.+.+...
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~  508 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAE  508 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555556666666666555554443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.38  E-value=59  Score=39.48  Aligned_cols=112  Identities=21%  Similarity=0.370  Sum_probs=69.3

Q ss_pred             cchhhhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHH
Q 006796           14 KLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA   93 (630)
Q Consensus        14 ~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA   93 (630)
                      +|||..+-+|=+++-...|+++++.+..+++.+...=..++++|.. +  ..++..+. .++.+.   +.+++=.+..+.
T Consensus       587 ~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~-~--~~~~~~~~-~~~~~~---~~~~~~~~~~~~  659 (1201)
T PF12128_consen  587 SLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQ-I--NKKIEELK-REITQA---EQELKQAEQDLQ  659 (1201)
T ss_pred             EeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHH-HHHHHH---HHHHHhhHHHHH
Confidence            5888888888778888899999999999999887664444444432 2  22222221 222222   222333356777


Q ss_pred             HHHhhhcchhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHH
Q 006796           94 AAFAERDNSVMEAEKAKEKEE-LMSQKFNEFQTRLEELSS  132 (630)
Q Consensus        94 ~AFAERD~slmEaEKaKE~Ee-~m~qkf~~f~~R~eE~~s  132 (630)
                      .+..+|+.--++++.+++.+. ..-++++.++.++..+..
T Consensus       660 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~  699 (1201)
T PF12128_consen  660 RLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQ  699 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888887788777766553 344455555555554433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=89.01  E-value=42  Score=37.36  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=17.2

Q ss_pred             HHHHhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhH
Q 006796           73 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK  110 (630)
Q Consensus        73 ae~skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaK  110 (630)
                      .|..--+.+||...-+...+..+=..=+.-.-|.+..+
T Consensus       300 kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~  337 (569)
T PRK04778        300 REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK  337 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555544443333333333333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=88.67  E-value=64  Score=38.96  Aligned_cols=25  Identities=20%  Similarity=0.170  Sum_probs=18.3

Q ss_pred             HHHHHHHHhhhhhchHHHHHHHHHH
Q 006796          391 KKIEELQRNLFQVTTEKVKALMELA  415 (630)
Q Consensus       391 ~~ieeLQrNl~QVt~EKVkaLmELA  415 (630)
                      .-.+.|+.-+..++.++...+|+.-
T Consensus       991 ~a~~~l~~~i~~~d~~~~~~f~~~f 1015 (1163)
T COG1196         991 EAKEKLLEVIEELDKEKRERFKETF 1015 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467777777777888888888754

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=88.58  E-value=6.7  Score=41.76  Aligned_cols=158  Identities=30%  Similarity=0.363  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHh-----------hhHHHHHHHHHHH-----------------Hhhhhh---chHHH
Q 006796          360 QALQEKVAALLLLSQQEERHLLERN-----------VNSALQKKIEELQ-----------------RNLFQV---TTEKV  408 (630)
Q Consensus       360 QALqEKveALlLlSQqeER~llE~~-----------~n~~Lq~~ieeLQ-----------------rNl~QV---t~EKV  408 (630)
                      +-|+-|++||+.||++=|.+-.|+.           +.++|.++..++.                 .+|.|.   +-|..
T Consensus         2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N   81 (319)
T PF09789_consen    2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN   81 (319)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence            3589999999999998887777763           4467777777777                 333221   33344


Q ss_pred             HHH-HHHHhHHHHHHHHH-------HHHhhhhhhhccccCCCcccccccCcchhhHhhhh--------------------
Q 006796          409 KAL-MELAQLKQDYQLLQ-------EKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLK--------------------  460 (630)
Q Consensus       409 kaL-mELAqLkq~y~lL~-------e~~~~~~k~~~~~~~~~~k~~~~~er~G~lknilk--------------------  460 (630)
                      +.| -|+..|+|.+.-++       ++.. ..+.+  .-+.|.+ ...|++...+..|-+                    
T Consensus        82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la-~~r~~--~~~~~~~-~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke  157 (319)
T PF09789_consen   82 KKLKEEVEELRQKLNEAQGDIKLLREKLA-RQRVG--DEGIGAR-HFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE  157 (319)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHH-hhhhh--hcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443 46677777655444       3221 11111  1112222 333888888888766                    


Q ss_pred             -----hhhHhhhhccCCCCCCCCccCcccccCccccccCccchhhhhhchhhHHHHHhhhHH----HHHHHHHHHHHHH
Q 006796          461 -----KTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDH----LISSIRRLRLSLS  530 (630)
Q Consensus       461 -----rtyLr~Wi~~~d~sG~~~~s~~~~~~~~~~~~~~s~D~ARmKvENAtLkEsvesmeh----LTSSihRLrl~Ll  530 (630)
                           |.+.|.=...+|   | +.+..=+ |...    .-+|+.-+-.||--|+|.+...+-    +-++|-+..-+|-
T Consensus       158 El~~ERD~yk~K~~RLN---~-ELn~~L~-g~~~----rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  158 ELVTERDAYKCKAHRLN---H-ELNYILN-GDEN----RIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHHH---H-HHHHHhC-CCCC----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 333333333332   1 1111000 1111    267999999999999999987664    3344555555444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.16  E-value=23  Score=33.30  Aligned_cols=123  Identities=27%  Similarity=0.362  Sum_probs=85.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccc
Q 006796          104 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK  183 (630)
Q Consensus       104 mEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K  183 (630)
                      +|++-|-++-+..-+++.+++.|.......+.....-|..|..++..+.++....+.-..   +                
T Consensus         7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le---e----------------   67 (143)
T PF12718_consen    7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE---E----------------   67 (143)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h----------------
Confidence            567777788888888888888888888888877777777888888777777664433222   1                


Q ss_pred             cccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 006796          184 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK  253 (630)
Q Consensus       184 cs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk  253 (630)
                             +...-+=++ +..+-|.-||++++.....+.-..-+||=.=.=-.|+-|+|..||.+..-|.+
T Consensus        68 -------~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~  129 (143)
T PF12718_consen   68 -------SEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE  129 (143)
T ss_pred             -------HHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence                   111001011 47788999999999888888888777774322234888999999987765543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=87.54  E-value=60  Score=37.37  Aligned_cols=15  Identities=13%  Similarity=0.379  Sum_probs=7.5

Q ss_pred             ccccccchhhHHHHH
Q 006796          599 KMDSVSAAGFEMVEL  613 (630)
Q Consensus       599 k~D~vsaAG~EMVEL  613 (630)
                      .+..+|++=-.+|-|
T Consensus      1071 ~~~~lSgge~~~~~l 1085 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTAL 1085 (1164)
T ss_pred             cchhcCcchHHHHHH
Confidence            344555544445544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.11  E-value=47  Score=35.66  Aligned_cols=24  Identities=38%  Similarity=0.495  Sum_probs=13.5

Q ss_pred             HHhhhHHHHHHhhHhHHHHHHHHHH
Q 006796          143 TLRFDLEKQEELNESFKEVINKFYE  167 (630)
Q Consensus       143 aLQ~dl~~~~eq~e~~~kVI~KFye  167 (630)
                      .++.++...+...+.+.+.+ +||+
T Consensus       259 ~l~~~~~~~~~~l~~~~~~~-~~~~  282 (562)
T PHA02562        259 KLNTAAAKIKSKIEQFQKVI-KMYE  282 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            35566666666666555553 4555

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=85.13  E-value=77  Score=36.26  Aligned_cols=29  Identities=28%  Similarity=0.365  Sum_probs=15.6

Q ss_pred             hhhHHHHHHHHHHHhhhhhcccchHHHHH
Q 006796           30 AGLEQEIEILKQKIAACARENSNLQEELS   58 (630)
Q Consensus        30 A~LEQeIE~LkkKl~~c~ReN~NLQeELs   58 (630)
                      ..|+++++.+++++..+...=..+++++.
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~  701 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAELEKALA  701 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677776666555444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.90  E-value=43  Score=33.22  Aligned_cols=51  Identities=24%  Similarity=0.290  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHH
Q 006796          114 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK  164 (630)
Q Consensus       114 e~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~K  164 (630)
                      ....+++.+.+.|++.++..+....+..+.|.-+|...++....+.+=++.
T Consensus       179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~  229 (237)
T PF00261_consen  179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555566666666666666666666666666666665555554433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.90  E-value=6.2  Score=37.91  Aligned_cols=119  Identities=26%  Similarity=0.257  Sum_probs=24.3

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhh----------------------cccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHH
Q 006796           26 CISKAGLEQEIEILKQKIAACAR----------------------ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEK   83 (630)
Q Consensus        26 ~qrtA~LEQeIE~LkkKl~~c~R----------------------eN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EK   83 (630)
                      +.|++.|+++...|+.....+..                      -=..||+||+++||-+++++.---..-.++.++++
T Consensus        30 ~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~  109 (194)
T PF08614_consen   30 ADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK  109 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            67888998888887763222111                      01348999999999999999553333344444444


Q ss_pred             hhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006796           84 QVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF  158 (630)
Q Consensus        84 QVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~  158 (630)
                      ..+=-++.++..=+++              ...-.++..+...++|....+...+-=-.+||+.+..+++....+
T Consensus       110 ~~~~~~~~l~~l~~~~--------------~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l  170 (194)
T PF08614_consen  110 ELSEKERRLAELEAEL--------------AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL  170 (194)
T ss_dssp             ----HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433333333221111              112234444444555555544444444445555555555554433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.73  E-value=14  Score=36.76  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             chhhHhhhhhhHHHHHHHHHHHhh
Q 006796           22 SPLVCISKAGLEQEIEILKQKIAA   45 (630)
Q Consensus        22 ~~~~~qrtA~LEQeIE~LkkKl~~   45 (630)
                      +|-...|-..||++++.++.+|+.
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~  111 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNN  111 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788889988888887765

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=84.43  E-value=83  Score=36.10  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHH
Q 006796          211 DELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV  290 (630)
Q Consensus       211 eEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~~  290 (630)
                      +++..+|.++..+...+|-==+.-+-|.+.+..|-|.  ..-.....+|.++-+---+|+++|.+||.|-+. |..=||.
T Consensus       447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~-lQkeiN~  523 (594)
T PF05667_consen  447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE-LQKEINS  523 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            5667777777777777776655555566655555554  445556677888888888999999999999875 5667899


Q ss_pred             HHhhhcccccc
Q 006796          291 IEEKTQHCDDV  301 (630)
Q Consensus       291 ieekl~~~~n~  301 (630)
                      +..||.-.+.+
T Consensus       524 l~gkL~RtF~v  534 (594)
T PF05667_consen  524 LTGKLDRTFTV  534 (594)
T ss_pred             HHHHHHhHHHH
Confidence            99999333344

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=84.23  E-value=48  Score=33.21  Aligned_cols=247  Identities=20%  Similarity=0.200  Sum_probs=116.3

Q ss_pred             hhhhhcccchhhhhcchhhHhhhhhhHHHHHHHHHHH-hhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhh
Q 006796            7 LSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKI-AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQV   85 (630)
Q Consensus         7 ~~~~v~~~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl-~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQV   85 (630)
                      |..|.++-||-|--+    =+....|+.+|..++.+. ..+.+.....+.|+.++.                     ++|
T Consensus         9 LNdRla~YIekVr~L----E~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr---------------------~~i   63 (312)
T PF00038_consen    9 LNDRLASYIEKVRFL----EQENKRLESEIEELREKKGEEVSRIKEMYEEELRELR---------------------RQI   63 (312)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------HHHHHHHHHHHHCHH---------------------HHH
T ss_pred             HHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhH---------------------Hhh
Confidence            445555555554332    345556666666666652 223333333444443332                     333


Q ss_pred             hHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHH
Q 006796           86 KFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF  165 (630)
Q Consensus        86 kFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KF  165 (630)
                      .-...--|..-.++|+.-.|++..+.+=+.-.+.....+.-+..+.+++++..-....|+..+..++++.+..+++-.. 
T Consensus        64 d~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee-  142 (312)
T PF00038_consen   64 DDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE-  142 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh-
Confidence            3333444666677777777777777666666666666666666677777777777777777777777777643333221 


Q ss_pred             HHHhhhhhhhhccccccccccccccccccccccCcchHHHHHHHHHHHHHHH------------HHHHHHHhhhhhh---
Q 006796          166 YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTR------------SSVENLQSKLRMG---  230 (630)
Q Consensus       166 yeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr------------~si~~LQskLR~G---  230 (630)
                              +-.++.-.-.    -..+.+++.+-++..+..+..+-.+.+...            .++..++......   
T Consensus       143 --------Ei~~L~~~~~----~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~  210 (312)
T PF00038_consen  143 --------EIEELREQIQ----SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEE  210 (312)
T ss_dssp             --------HHHTTSTT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------hhhhhhhccc----cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccc
Confidence                    1111111100    233344555544545555555544443221            3344444333221   


Q ss_pred             ---HHHHH-HhHHhHHHHHHhhhh---hHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhHHHHH
Q 006796          231 ---LEIEN-HLKKSVRELEKKIIH---SDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVI  291 (630)
Q Consensus       231 ---LEIEn-HLkk~vr~LeKkqi~---~dk~i~ngis~Lq~~h~~~R~~Im~lL~ee~s~i~s~v~~i  291 (630)
                         +--|. .+++.+..|+.+..-   -...+.+.|.++.+.|...+...-..+..=...|..+-..+
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM  278 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence               11111 134444444433221   24566778888888888777665555444444444444333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=83.58  E-value=60  Score=40.86  Aligned_cols=74  Identities=20%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             HhhhhHHHHHh----hhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHH
Q 006796           87 FFQGCMAAAFA----ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE  160 (630)
Q Consensus        87 FFQs~VA~AFA----ERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~k  160 (630)
                      -+|+-||++|.    ||-.-|=||=+.+++-+....++...+.++.++...+.+.+..-..|+.+.+..++..+...+
T Consensus       265 ~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee  342 (1486)
T PRK04863        265 ESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT  342 (1486)
T ss_pred             hhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999995    788888899999999999999999999999999988888888888888888888877765554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.11  E-value=97  Score=35.86  Aligned_cols=177  Identities=26%  Similarity=0.330  Sum_probs=119.2

Q ss_pred             cchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHhhhHhhhhHHHHHhhhc
Q 006796           21 LSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERD  100 (630)
Q Consensus        21 ~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLAdLh~ae~skN~e~EKQVkFFQs~VA~AFAERD  100 (630)
                      -+.|...=.+.|++.-...-+++.+|...|-+|-|.++++--..+..+-|-.    +-..+.-+|.=||..|-+      
T Consensus       215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre----~~~~L~~D~nK~~~y~~~------  284 (581)
T KOG0995|consen  215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLRE----KKARLQDDVNKFQAYVSQ------  284 (581)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH----HHHHHHhHHHHHHHHHHH------
Confidence            3455666677888888888999999999999999999988888777775521    112267788888888765      


Q ss_pred             chhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccc
Q 006796          101 NSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSW  180 (630)
Q Consensus       101 ~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~  180 (630)
                         |+     -+-..|-++++...+-+++-+++|...+..|+.|+.-++.+                         ++|.
T Consensus       285 ---~~-----~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-------------------------~iS~  331 (581)
T KOG0995|consen  285 ---MK-----SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-------------------------GISG  331 (581)
T ss_pred             ---HH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------CCCH
Confidence               44     55567888888888888888888877777777765443332                         2332


Q ss_pred             ccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHH
Q 006796          181 EDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAI  259 (630)
Q Consensus       181 ~~Kcs~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngi  259 (630)
                      +|=        ..        ...=-..|+++++.....+|.|++++-   +.+--.+.....+|++-+.+++.+++=.
T Consensus       332 ~dv--------e~--------mn~Er~~l~r~l~~i~~~~d~l~k~vw---~~~l~~~~~f~~le~~~~~~~~l~~~i~  391 (581)
T KOG0995|consen  332 EDV--------ER--------MNLERNKLKRELNKIQSELDRLSKEVW---ELKLEIEDFFKELEKKFIDLNSLIRRIK  391 (581)
T ss_pred             HHH--------HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            210        00        000123577777777777787777652   2222234556788888888888887643

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.92  E-value=14  Score=42.86  Aligned_cols=28  Identities=11%  Similarity=0.200  Sum_probs=24.6

Q ss_pred             hhhhHHHHHHhhhhcchhhhhHHHHHHh
Q 006796          266 HSQLRVHVVNSLEEGRSHIKSISDVIEE  293 (630)
Q Consensus       266 h~~~R~~Im~lL~ee~s~i~s~v~~iee  293 (630)
                      =..|+..|-++|.+....|+.+|+.|..
T Consensus       683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~  710 (717)
T PF10168_consen  683 SESQKRTIKEILKQQGEEIDELVKQIKN  710 (717)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568889999999999999999998864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=82.15  E-value=22  Score=29.94  Aligned_cols=84  Identities=23%  Similarity=0.354  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccc
Q 006796          116 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW  195 (630)
Q Consensus       116 m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs~LL~Ds~~~W  195 (630)
                      +..+|+.++.++..+.+++...+..-..++.=+..+                        ..+..+.+|-..+.+.    
T Consensus         3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL------------------------~~l~~~~~~y~~vG~~----   54 (106)
T PF01920_consen    3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL------------------------EKLDDDRKVYKSVGKM----   54 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HTSSTT-EEEEEETTE----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhCCCcchhHHHHhHH----
Confidence            567788888888777766654433222211111111                        3344455666555544    


Q ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006796          196 SFNDTSTSKYISALEDELEKTRSSVENLQSKLR  228 (630)
Q Consensus       196 Sfn~tStskyisALEeEle~lr~si~~LQskLR  228 (630)
                       |=-.+...++..|++..+.+...+++|..++.
T Consensus        55 -fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~   86 (106)
T PF01920_consen   55 -FVKQDKEEAIEELEERIEKLEKEIKKLEKQLK   86 (106)
T ss_dssp             -EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33367788999999999999999998888765

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=81.58  E-value=59  Score=37.21  Aligned_cols=147  Identities=22%  Similarity=0.226  Sum_probs=0.0

Q ss_pred             hhhhhcccchhhhhcchhhHhhhhhhHHHHHHHHHHHhhhhhcccchHHHHHHHHHhHHHHH-HHhHHHH------Hhhh
Q 006796            7 LSSCVCSKLDLVTLLSPLVCISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLA-DLHAAEV------IKNM   79 (630)
Q Consensus         7 ~~~~v~~~~d~~t~~~~~~~qrtA~LEQeIE~LkkKl~~c~ReN~NLQeELsEAYRiK~qLA-dLh~ae~------skN~   79 (630)
                      |..|+.-.=+.-+.+.+....-.+-.|| +..++.++.+.-+++.-|.+||+.|--++.... |||.|-+      .+=.
T Consensus       264 Lk~~~~~~~~~~~~~~~~~~e~e~Lkeq-Lr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLa  342 (546)
T PF07888_consen  264 LKETVVQLKQEETQAQQLQQENEALKEQ-LRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLA  342 (546)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH


Q ss_pred             HHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH---
Q 006796           80 EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE---  156 (630)
Q Consensus        80 e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e---  156 (630)
                      ++..++|=.+|-.++          |.+.-+.--++.-.++..+..++..+...+.+.+..+-+|+.+|...++.+.   
T Consensus       343 d~~l~lke~~~q~~q----------Ek~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vql  412 (546)
T PF07888_consen  343 DASLELKEGRSQWAQ----------EKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQL  412 (546)
T ss_pred             HHHHHHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH


Q ss_pred             -----------hHHHHHHH
Q 006796          157 -----------SFKEVINK  164 (630)
Q Consensus       157 -----------~~~kVI~K  164 (630)
                                 +.++|..|
T Consensus       413 sE~~rel~Elks~lrv~qk  431 (546)
T PF07888_consen  413 SENRRELQELKSSLRVAQK  431 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHH

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=81.09  E-value=1.9e+02  Score=37.84  Aligned_cols=87  Identities=22%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             HhhhHHHHhhhHhhhhHHHHHhhhcchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006796           76 IKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN  155 (630)
Q Consensus        76 skN~e~EKQVkFFQs~VA~AFAERD~slmEaEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~  155 (630)
                      +..-.+|++.|=|.+-+|.-=-..|...-|-+-+..-...-..+......+++|...++....+.|..|+.++..++.+.
T Consensus      1428 ~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~ 1507 (1930)
T KOG0161|consen 1428 AAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQK 1507 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888787776654433444444444444444455556666677788887788888888888888888888877


Q ss_pred             HhHHHHH
Q 006796          156 ESFKEVI  162 (630)
Q Consensus       156 e~~~kVI  162 (630)
                      .-.-+.+
T Consensus      1508 ~e~~k~v 1514 (1930)
T KOG0161|consen 1508 DEGGKRV 1514 (1930)
T ss_pred             HHHHHHH
Confidence            7555544

>PRK11637 AmiB activator; Provisional

Probab=80.96  E-value=83  Score=33.60  Aligned_cols=92  Identities=17%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhh-------hh-hHHH--HHHHHHHHHHhhhhhHH
Q 006796          202 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI-------IH-SDKF--ISNAIAELRLCHSQLRV  271 (630)
Q Consensus       202 tskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkq-------i~-~dk~--i~ngis~Lq~~h~~~R~  271 (630)
                      +..-|+.++.+++.+...|+.+|.+|.--   ..-|.+++|.+-+.-       ++ .+.|  +. .+..+-.+..+.|.
T Consensus        94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~---~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~-r~~~~l~~i~~~d~  169 (428)
T PRK11637         94 TQNTLNQLNKQIDELNASIAKLEQQQAAQ---ERLLAAQLDAAFRQGEHTGLQLILSGEESQRGE-RILAYFGYLNQARQ  169 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHH-HHHHHHHHHHHHHH
Confidence            55566777777777777777776665432   233566677766622       11 1111  11 22333344556677


Q ss_pred             HHHHhhhhcchhhhhHHHHHHhhh-cc
Q 006796          272 HVVNSLEEGRSHIKSISDVIEEKT-QH  297 (630)
Q Consensus       272 ~Im~lL~ee~s~i~s~v~~ieekl-~~  297 (630)
                      .+++-+.+....+......+++++ ++
T Consensus       170 ~~l~~l~~~~~~L~~~k~~le~~~~~l  196 (428)
T PRK11637        170 ETIAELKQTREELAAQKAELEEKQSQQ  196 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877777777777777766 44

>PRK03918 chromosome segregation protein; Provisional

Probab=80.69  E-value=1.1e+02  Score=34.89  Aligned_cols=51  Identities=22%  Similarity=0.292  Sum_probs=25.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006796          106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE  156 (630)
Q Consensus       106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e  156 (630)
                      -+.+++..+...+++..++.++..++..+.+...--..|+..+..+.+...
T Consensus       233 l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~  283 (880)
T PRK03918        233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK  283 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555666555555554444444444444444444433

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=80.63  E-value=8.1  Score=33.96  Aligned_cols=58  Identities=28%  Similarity=0.315  Sum_probs=41.9

Q ss_pred             HHHhhhHHHHHHHHHHHHhhhhhchHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhccc
Q 006796          381 LERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVL  438 (630)
Q Consensus       381 lE~~~n~~Lq~~ieeLQrNl~QVt~EKVkaLmELAqLkq~y~lL~e~~~~~~k~~~~~  438 (630)
                      +++.-+..|...|.+||.-|.-..+.=-.+=.|-.+|+++-+.|++|++++|...+.-
T Consensus        13 ~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~   70 (80)
T PF10224_consen   13 LEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVF   70 (80)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3444556677778888887765444333334678899999999999999999876443

The exact function is unknown.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=80.09  E-value=1.2e+02  Score=34.83  Aligned_cols=7  Identities=14%  Similarity=-0.064  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 006796          517 HLISSIR  523 (630)
Q Consensus       517 hLTSSih  523 (630)
                      ++++-++
T Consensus      1096 ~~~~l~~ 1102 (1179)
T TIGR02168      1096 ALTALAL 1102 (1179)
T ss_pred             HHHHHHH
Confidence            3333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	630
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 1e-14
 Identities = 82/570 (14%), Positives = 168/570 (29%), Gaps = 160/570 (28%)

Query: 101 NSVMEAEKA----KEKEELMSQKFNEFQT-RLEELSSENIELKKQNATLRFDLEKQEELN 155
             V +  K+    +E + ++  K     T RL       +  K++    +F +E+   +N
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMVQKF-VEEVLRIN 90

Query: 156 ESFKEVINKF-YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST-SKYISALEDEL 213
             F  +++    E RQ S+      + ++   L         +ND    +KY  +     
Sbjct: 91  YKF--LMSPIKTEQRQPSMM--TRMYIEQRDRL---------YNDNQVFAKYNVSRLQPY 137

Query: 214 EKTRSSVENLQSKLRMGLEIENH----LKKSVRELEKKIIHSDKFI---SNAI--AELRL 264
            K R ++  L+    + +           K+   +   +  S K        I    L+ 
Sbjct: 138 LKLRQALLELRPAKNVLI----DGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 265 CHS---------QLRVHVVNSLEEGRSHIKSISDVIEE------------KTQHC----D 299
           C+S         +L   +  +      H  +I   I                ++C     
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 300 DVIRGQNTGTYQRETKLDEFE--C------RDVHINNDADTNLVSQRNDPAYCDIEADRK 351
           +V   QN          + F   C      R   + +       +         ++    
Sbjct: 252 NV---QNAKA------WNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSM 296

Query: 352 G----EASETLAQALQEKVAAL---------LLLSQ-----QEE-------RHLLERNVN 386
                E    L + L  +   L           LS      ++        +H+    + 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 387 SALQKKIEEL----QRNLFQ---VTTEKVK---ALMELAQLKQDYQLLQEKICNEMKEEK 436
           + ++  +  L     R +F    V          L+ L             + N++ +  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYS 415

Query: 437 VLAGNG-EKRIVIPERDGRLR-NLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN 494
           ++     E  I IP     L+  L  +  L R I  +D          NI      +  +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDH--------YNIP-----KTFD 460

Query: 495 SIDFARMRIENAT-------LKESLENMDHLISSIRRLRLSLS----KVKELATSEDTIG 543
           S D     ++          LK         ++  R + L       K++  +T+ +  G
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 544 SMSETLDDI------ITEAKLVKTALGSSL 567
           S+  TL  +      I +       L +++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAI 548

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 8e-10
 Identities = 79/557 (14%), Positives = 172/557 (30%), Gaps = 135/557 (24%)

Query: 31  GLEQEIEILKQKIAACARENSNLQEELSEA----------------YRIKGQLADLHAAE 74
            L    + L   I    R+ S +     E                  R++     L  A 
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQA- 143

Query: 75  VIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 134
            +  +   K V    G +  +      + +  +     +      F  F   L+  +S  
Sbjct: 144 -LLELRPAKNV-LIDG-VLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 135 IELKKQNATLRFDLEKQ-EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLL-LD-- 190
             L+     L + ++      ++    +  + + I+ +   +L    +    CLL L   
Sbjct: 197 TVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVLLNV 253

Query: 191 -SAEMW-SFND------TSTSKYISALEDELEKTRSSVENLQSKL--RMGLEI-ENHLKK 239
            +A+ W +FN       T+  K ++        T  S+++    L       +   +L  
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 240 SVRELEKKIIHSDKFISNAIAEL---RLCHSQLRVHVVNSLEEGRSHIKSISDVIEEK-T 295
             ++L ++++ ++    + IAE     L       HV  + ++  + I+S  +V+E    
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEY 371

Query: 296 QHC--------DDV-IRGQNTGTYQRE-TKLDEFECRDVHINNDADTNLVSQRNDPAYCD 345
           +              I    T         + + +   V +N     +LV ++   +   
Sbjct: 372 RKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTIS 427

Query: 346 I-----EADRKGEASETLAQALQEKVAALLLLSQQEE--------------RHLLERNVN 386
           I     E   K E    L +++ +           +                HL      
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL------ 481

Query: 387 SALQKKIEELQR-NLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNG--- 442
               K IE  +R  LF+              +  D++ L++KI ++              
Sbjct: 482 ----KNIEHPERMTLFR-------------MVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 443 ------EKRIV--IPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN 494
                 +  I    P+ +  +  +            LDF     +   N+   I ++ ++
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAI------------LDFLPKIEE---NL---ICSKYTD 566

Query: 495 SIDFARMRIENATLKES 511
            +  A M  + A  +E+
Sbjct: 567 LLRIALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 57/452 (12%), Positives = 139/452 (30%), Gaps = 136/452 (30%)

Query: 6   ILSSCVCSKLDLVTLLSPLVC-ISKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIK 64
            ++  VC    +   +   +  ++         +L+       + + N       +  IK
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 65  GQLADLHAAEVIKNMEAEKQVKFFQGCM-----------AAAFA--------ERDNSVME 105
            ++  +     ++ +   K    ++ C+             AF          R   V +
Sbjct: 225 LRIHSI--QAELRRLLKSKP---YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 106 AEKAKEKEEL----MSQKFNEFQTRLEELSSENIELKKQNATLRFDL------------- 148
              A     +     S      +   + L  + ++ + Q      DL             
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQ------DLPREVLTTNPRRLS 331

Query: 149 ----EKQEELN--ESFKEV-INKFYEIRQQSLEVLETSWEDK-----CACLLLDS----- 191
                 ++ L   +++K V  +K   I + SL VLE + E +      +     +     
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTI 390

Query: 192 --AEMWSFNDTSTSKYI-------SALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVR 242
             + +W     S    +       S +E + +++  S+ ++  +L++ LE E        
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE-------Y 443

Query: 243 ELEKKII-----------------HSDKFISNAIA--------------------ELRLC 265
            L + I+                 + D++  + I                     + R  
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 266 HSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETK-LDEFECR-D 323
             ++R H   +     S + ++  +   K   CD      N   Y+R    + +F  + +
Sbjct: 504 EQKIR-HDSTAWNASGSILNTLQQLKFYKPYICD------NDPKYERLVNAILDFLPKIE 556

Query: 324 VHINNDADTNLV----SQRNDPAYCDIEADRK 351
            ++     T+L+       ++  +   EA ++
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIF--EEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 7e-08
 Identities = 49/305 (16%), Positives = 87/305 (28%), Gaps = 80/305 (26%)

Query: 371 LLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEK----VKALMELAQLKQDYQLLQE 426
           +LS++E  H++         K        LF     K    V+  +E   L+ +Y+ L  
Sbjct: 45  ILSKEEIDHIIM-------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMS 96

Query: 427 KICNEMKEEKVLAGNGEKRIVIPERDGRLRN---LLKKTN---------LRRWIGTLDFS 474
            I  E ++      +   R+ I +RD RL N   +  K N         LR+ +  L  +
Sbjct: 97  PIKTEQRQP-----SMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 475 GN---EGQ---------ADLNIREGISTRRSNSI---DFARMRIENATLKESLENMDHLI 519
            N   +G           D+ +   +  +    I   +          L E L+ + + I
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQI 209

Query: 520 SSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPV------SWIA 573
                 R   S        +  I S+   L  ++             L V      +   
Sbjct: 210 DPNWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAW 259

Query: 574 E-----------SDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILK 622
                       +    +   TD  S       S +             E+  L  + L 
Sbjct: 260 NAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHSM----TLTPDEVKSLLLKYLD 312

Query: 623 DSTTK 627
                
Sbjct: 313 CRPQD 317

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 17/226 (7%)

Query: 29   KAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFF 88
            K  ++Q++  L++++         LQ E   A     ++ D       +N +  K+ K  
Sbjct: 950  KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009

Query: 89   QGCMAAA---FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 145
            +  ++      AE +       K K K E      +E + RL++      EL+K    L 
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHE---SMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 146  FDLEKQEELNESFKEVINKFYEI---RQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST 202
             +     E     +  I +       +++ L+      ED+ +       ++        
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI-----REL 1121

Query: 203  SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 248
              +IS L+++LE  +++    + + R   ++   L+    ELE  +
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKR---DLSEELEALKTELEDTL 1164

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 61/396 (15%), Positives = 141/396 (35%), Gaps = 73/396 (18%)

Query: 32   LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGC 91
             ++E++  K++      E   L+++ ++    K  L +   AE     EAE+     +  
Sbjct: 862  KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM----RVR 917

Query: 92   MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 151
            +AA   E +  + E E   E+EE  SQ+    + ++++   + ++L++Q        +K 
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ---QMLDLEEQLEEEEAARQKL 974

Query: 152  EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 211
            +    +    I        + +E      ED+   L               +K    LE+
Sbjct: 975  QLEKVTADGKI--------KKMEDDILIMEDQNNKL---------------TKERKLLEE 1011

Query: 212  ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 271
             +    +++   + K +   +++N  +  + ELE +           + +      +L  
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR-----------LKKEEKSRQELEK 1060

Query: 272  HVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDAD 331
                   E     + I+++  +  +              + +    E E +      + +
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAE-------------LKAQLAKKEEELQAALARLEDE 1107

Query: 332  TNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQK 391
            T+  +           A +K    E+    LQE + +      +  R+  E+     L +
Sbjct: 1108 TSQKNN----------ALKKIRELESHISDLQEDLESE-----KAARNKAEKQ-KRDLSE 1151

Query: 392  KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEK 427
            ++E L+  L + T +      EL     DY+   +K
Sbjct: 1152 ELEALKTEL-EDTLDTTATQQEL--RGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 49/352 (13%), Positives = 122/352 (34%), Gaps = 50/352 (14%)

Query: 98   ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 157
            E      E ++ KE+++    +  E + +  +L  E   L+++   L+ + E   E  E 
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK---LQAETELYAEAEEM 914

Query: 158  FKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTR 217
               +  K  E+ +   E+             ++  E          +    L+ E +K +
Sbjct: 915  RVRLAAKKQELEEILHEMEA----------RIEEEE----------ERSQQLQAEKKKMQ 954

Query: 218  SSVENLQSKL------RMGLEIENH-LKKSVRELEKKIIHSDKFISNAIAELRLCHSQLR 270
              + +L+ +L      R  L++E       ++++E  I+  +   +    E +L   ++ 
Sbjct: 955  QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014

Query: 271  VHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDA 330
              +  +L E     K+++ +  +      ++           E +L + E        + 
Sbjct: 1015 D-LTTNLAEEEEKAKNLTKLKNKHESMISEL-----------EVRLKKEE----KSRQEL 1058

Query: 331  DTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSA-- 388
            +        + +    +          L   L +K   L     + E    ++N      
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118

Query: 389  --LQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVL 438
              L+  I +LQ +L      + KA  +   L ++ + L+ ++ + +      
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 10/158 (6%)

Query: 29   KAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFF 88
            K   E  I  L+ ++    +E  + QE      +++G+ +DLH     +  E + Q+   
Sbjct: 1034 KNKHESMISELEVRL---KKEEKSRQELEKIKRKLEGESSDLHE----QIAELQAQIAEL 1086

Query: 89   QGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 148
            +  +A    E   ++   E    ++    +K  E ++ + +L  +    K          
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146

Query: 149  EKQEELNESFKEVI---NKFYEIRQQSLEVLETSWEDK 183
                E  E+ K  +         +Q+         +DK
Sbjct: 1147 RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 30/147 (20%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 28   SKAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKF 87
               GLE +I  L++KI    +E  +L E+++          +   ++V +   +E++ K 
Sbjct: 922  LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981

Query: 88   FQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFD 147
                + +   E      E  + + +++ + +  ++++   E+L S   ELK+QN  L+  
Sbjct: 982  ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS---ELKEQNTLLK-- 1036

Query: 148  LEKQEELNESFKEVINKFYEIRQQSLE 174
              ++EELN    +   +  E  ++ L 
Sbjct: 1037 -TEKEELNRRIHDQAKEITETMEKKLV 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 31/238 (13%), Positives = 84/238 (35%), Gaps = 26/238 (10%)

Query: 62   RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA-AAFAERDNSVMEAEKAKE--KEELMSQ 118
             ++G L       +++  ++    K  +G +A   +     +++  +        +   +
Sbjct: 848  LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907

Query: 119  KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET 178
            K       +E     +I L+ +   L+  +++Q +  +S  E +N            LE 
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN-----------LEI 956

Query: 179  SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLK 238
            ++  +   L  D   +               E+E +   + V +LQ ++    +  +  +
Sbjct: 957  TYSTETEKLRSDVERL------------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004

Query: 239  KSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQ 296
               + +E+            ++EL+  ++ L+              K I++ +E+K  
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	630
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.39
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	87.04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	85.49
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	81.48

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.39  E-value=2.2  Score=43.84  Aligned_cols=65  Identities=9%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 006796          106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ  170 (630)
Q Consensus       106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~  170 (630)
                      ..+.++..++.-+++..+++..++++..+.++|+.-..++.+.+..+.+...+.+.+++=|+-|.
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~  589 (597)
T 3oja_B          525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR  589 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            33444445555666777778888888888888888888888888888888888888888777765

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=87.04  E-value=1.2  Score=51.13  Aligned_cols=40  Identities=18%  Similarity=0.238  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006796          115 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL  154 (630)
Q Consensus       115 ~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq  154 (630)
                      ....+..++++++++++..+.+.+.....++.++..++.+
T Consensus       917 ~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~e  956 (1184)
T 1i84_S          917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ  956 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555566666555555555555555444444333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=85.49  E-value=26  Score=33.36  Aligned_cols=125  Identities=15%  Similarity=0.207  Sum_probs=88.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccc
Q 006796          106 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA  185 (630)
Q Consensus       106 aEKaKE~Ee~m~qkf~~f~~R~eE~~s~~~~qk~~n~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kcs  185 (630)
                      +.|.|-..-.+....+.++.-++|++..|.-.....+.|+.|++.+..+++.         |-|.++.-- ++.      
T Consensus        29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~s-e~~------   92 (168)
T 3o0z_A           29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHDS-EMI------   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HHH------
Confidence            4566777778888999999999999999999999999999999999988882         112111110 000      


Q ss_pred             cccccccccccccCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 006796          186 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC  265 (630)
Q Consensus       186 ~LL~Ds~~~WSfn~tStskyisALEeEle~lr~si~~LQskLR~GLEIEnHLkk~vr~LeKkqi~~dk~i~ngis~Lq~~  265 (630)
                                    +.+.--|.+|++|++.++....+.+..-       ++|+.++..|||...-+.==+.=.|-.+|+-
T Consensus        93 --------------~elq~ri~~L~~El~~~k~~~~k~~~e~-------r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~  151 (168)
T 3o0z_A           93 --------------GDLQARITSLQEEVKHLKHNLEKVEGER-------KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR  151 (168)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence                          1122368888888888888887776554       3689999999998876553333455666655


Q ss_pred             hh
Q 006796          266 HS  267 (630)
Q Consensus       266 h~  267 (630)
                      |-
T Consensus       152 ~e  153 (168)
T 3o0z_A          152 LE  153 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.06  E-value=66  Score=41.67  Aligned_cols=46  Identities=13%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             hHHHHHH-hHHhHHHHHHhh--hhhHHHHHHH-HHHHHHhhhhhHHHHHH
Q 006796          230 GLEIENH-LKKSVRELEKKI--IHSDKFISNA-IAELRLCHSQLRVHVVN  275 (630)
Q Consensus       230 GLEIEnH-Lkk~vr~LeKkq--i~~dk~i~ng-is~Lq~~h~~~R~~Im~  275 (630)
                      ||.-|+. -...+..|+.+.  +.=|-++..| |+-+--+-.++|..+++
T Consensus      2081 gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~ 2130 (3245)
T 3vkg_A         2081 NLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMR 2130 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred             hhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4555554 345555565443  2234455444 33333444567776654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=81.48  E-value=11  Score=43.50  Aligned_cols=32  Identities=31%  Similarity=0.456  Sum_probs=1.9

Q ss_pred             hhhhHHHHHHHHHHHhhhhhcccchHHHHHHH
Q 006796           29 KAGLEQEIEILKQKIAACARENSNLQEELSEA   60 (630)
Q Consensus        29 tA~LEQeIE~LkkKl~~c~ReN~NLQeELsEA   60 (630)
                      ...||..|+.|+.++..--.+|..|++++...
T Consensus       923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~  954 (1080)
T 2dfs_A          923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL  954 (1080)
T ss_dssp             ----------------------------CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46889999999999999999999999886533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00