Citrus Sinensis ID: 006812

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
Protein Sequence
MKRASFSILSQLTRCRPQKLAPFLSKNYIHDLTSSSSPLKSCTKAHGLEFRTHQPSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGASINQLPTKALPLPPTSVSGQSSQPDVSINQKLTGAM
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHccccccHHcccccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
MKRASFSILsqltrcrpqklapflsknyihdltssssplksctkahglefrthqpshtintlvgnppqtstrqrkIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKldqeggdpemTLSFANRALnvldkdernnrpSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLeeeglggsvedikPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKkglghnsvevaHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGildkketispeevADAYSEISMQYESMNEFETAISLLKRTLALLEKlpqaqhsegsvSARIGWLLLLtgkvpqaiPYLESAAERLKesfgpkhfgvGYIYNNLGaayleldrpqsAAQVFAFAKDImdvslgphhadsIEACQNLSKAYSSMGSYTLAIEFQQRAIDAweshgpsaQDELREARRLLEQLKIKAsgasinqlptkalplpptsvsgqssqpdvsinqkltgam
Flexible Loop (DISEMBL)
mkrasfsilsqltrcrpqklAPFLSKNYIHDLTSSSSPLKSCTKAHGLEfrthqpshtintlvgnppqtstrqrkikeksDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGildkketispeEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKasgasinqlptkALPLpptsvsgqssqpdvsinqkltgam
Low Complexity Region (SEG)
MKRASFSILSQLTRCRPQKLAPFLSKNYIHDLTSSSSPLKSCTKAHGLEFRTHQPSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMlgrleeeglggSVEDIKPIMHAVHLELANVKTAMGRREEALEHlqkcleikelileeDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISllkrtlalleklPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDelrearrlleQLKIKASGASINQLPTKALPLPPTSVSGQSSQPDVSINQKLTGAM
Disordered region (IsUnstruct)
***********LTRCRPQKLAPFLSKNYIH******************************************************************************TELGLVGLKIALKLD*********LSFANRALNVL********PSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP******GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW****************************************************************
Disordered Region (DISOPRED)
******S****LTR*************YIHDLTSSSSPLKSCTKAHGLEFRTHQ*********GNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQ*EKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGASINQLPTKALPLPPTSVSGQSSQPDVSINQKLTGAM
Disordered Region (DISEMBL)
MKRASFSILSQLTRCRPQKLAPFLSKNYIHDLTSSSSPLKSCTKAHGLEFRTHQPSHTINTLVGNP*************************SEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP********VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGASINQLPTKALPLP************VSINQKLTGAM
Disordered Region (DISPRO)
********LSQLTRCRPQKLAPFLSKNYIHDLTSSSSPLKSCTKAHGLEFRTHQPSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGASINQLPTKALPLPPTSVSGQSSQPDVSINQKLTG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRASFSILSQLTRCRPQKLAPFLSKNYIHDLTSSSSPLKSCTKAHGLEFRTHQPSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAxxxxxxxxxxxxxxxxxxxxxSETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESxxxxxxxxxxxxxxxxxxxxxPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDExxxxxxxxxxxxxxxxxxxxxQLPTKALPLPPTSVSGQSSQPDVSINQKLTGAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	630	2.2.26 [Sep-21-2011]
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.533	0.256	0.253	2e-11
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.533	0.258	0.250	4e-11
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.512	0.243	0.247	1e-09
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.511	0.242	0.238	3e-09
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.522	0.252	0.237	1e-08
P46825	571	Kinesin light chain OS=Do	N/A	no	0.244	0.269	0.275	3e-06
P46824	508	Kinesin light chain OS=Dr	yes	no	0.244	0.303	0.275	3e-06
Q05090	686	Kinesin light chain OS=St	no	no	0.290	0.266	0.274	4e-06
Q9NSK0	619	Kinesin light chain 4 OS=	no	no	0.242	0.247	0.264	4e-05
Q68G30	505	Kinesin light chain 3 OS=	no	no	0.241	0.300	0.254	5e-05

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 150/351 (42%), Gaps = 15/351 (4%)

Query: 220  MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279
            +G   +A+  LQ+ LEI+E  L+ D   +  +   LA  +V    F  A     +ALEI 
Sbjct: 940  LGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQSKKFGNAEQLYKQALEIS 999

Query: 280  KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE-LSQKVLKTWGLSSELLRAEIDAA 338
            +   G   + VA +   L V+Y    + Q   EQ E L +K LK    S+    +    A
Sbjct: 1000 ENAYGSEHMRVARELDALAVLY----QKQNKFEQAEQLRKKSLKIRQKSARRKGSMYGFA 1055

Query: 339  NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398
             ++    + EE +   K         +E   L ++     L   E F   KR LE+   +
Sbjct: 1056 LLRRRALQLEE-LTLGKDTSDNARTLNELGVLYYLQ--NNLETAETFL--KRSLEMRERV 1110

Query: 399  LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSAR- 457
            L         + A + + ++  Y    +++ A  L +R L +  +     H   + + + 
Sbjct: 1111 LGADHP----DCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKH 1166

Query: 458  IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
            +  L    GK+ +A+P  E A E  ++SFGPKH  V     NL   Y ++ +   A+ ++
Sbjct: 1167 LAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQAEASPLY 1226

Query: 518  AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568
              A  I + SLG  H    E  +NL+      G +  A E  +RA++  E+
Sbjct: 1227 ERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDFEKAAELYKRAMEIKET 1277

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Xenopus tropicalis (taxid: 8364)

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 149/351 (42%), Gaps = 15/351 (4%)

Query: 220  MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279
            +G   +A+  LQ+ LEI+E  L+ D   +  +   LA  ++    F  A     +ALEI 
Sbjct: 929  LGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQSKKFGNAEQLYKQALEIS 988

Query: 280  KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE-LSQKVLKTWGLSSELLRAEIDAA 338
            +   G   + VA +   L V+Y    + Q   EQ E L +K LK    S+    +    A
Sbjct: 989  ENAYGSEHLRVARELDALAVLY----QKQNKFEQAEQLRKKSLKIRQKSARRKGSMYGFA 1044

Query: 339  NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398
             ++    + EE +   K         +E   L ++     L   E F   KR LE+   +
Sbjct: 1045 LLRRRALQLEE-LTLGKDTSDNARTLNELGVLYYLQ--NNLETAETFL--KRSLEMRERV 1099

Query: 399  LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSAR- 457
            L         + A + + ++  Y    +++ A  L +R L +  +     H   + + + 
Sbjct: 1100 LGADHP----DCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKH 1155

Query: 458  IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
            +  L    GK+ +A+P  E A +  ++SFGPKH  V     NL   Y ++ +   A  ++
Sbjct: 1156 LAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDALPLY 1215

Query: 518  AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568
              A  I + SLG  H    E  +NL+      G Y  A E  +RA++  E+
Sbjct: 1216 ERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDYEKAAELYKRAMEIKET 1266

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus laevis (taxid: 8355)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 33/356 (9%)

Query: 220  MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279
            +G   +A+  LQ+ LEI+E  L+ D   +  +   LA  +V    F +A     +ALEI 
Sbjct: 951  LGLLSQAVVPLQRSLEIRETALDPDHPRVAQSLHQLAGVYVQWKKFGDAEQLYKQALEIS 1010

Query: 280  KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN 339
            +   G +    A +   L  +Y      Q   EQ E  +K        S ++R +  A  
Sbjct: 1011 ENAYGADHPHAARELEALATLY----HKQNKYEQAEHFRK-------KSVIIRQQ--ATR 1057

Query: 340  MQIALGKF----EEAINTLKGVVRQTEKESETRAL----VFISMGKALCNQEKFADAKRC 391
             + +L  F      A+  L+ +    +K    R L    V   +   L   E+F   KR 
Sbjct: 1058 RKGSLYGFALLRRRALQ-LEELTLGKDKPENARTLNELGVLYFLQNNLETAEQFL--KRS 1114

Query: 392  LEIACGILDKKETISPE--EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH 449
            LE+      ++  + P+  + A + + ++       ++E A  L +R L +  +     H
Sbjct: 1115 LEM------RERVLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYERALDIRRRALAPDH 1168

Query: 450  SEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD 508
               + + + +  L   TGKV +A+P  E A E  ++SFGPKH  V     NL   + ++ 
Sbjct: 1169 PSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQMK 1228

Query: 509  RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
            +   A  ++  A  I + SLG  H    E  +NL+      G++  A E  +RA++
Sbjct: 1229 KHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEEGNFEKAAELYKRAME 1284

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 151/357 (42%), Gaps = 35/357 (9%)

Query: 220  MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279
            +G   +A+  LQ+ LEI+E  L+ D   +  +   LA  +V    F  A     +ALEI 
Sbjct: 956  LGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKFGNAEQLYKQALEIS 1015

Query: 280  KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKA----LEQNELSQKVLKTWG--LSSELLRA 333
            +   G +    A +   L  +Y    ++++A     +  ++ QK +K  G      LLR 
Sbjct: 1016 ENAYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAIKKKGNLYGFALLRR 1075

Query: 334  EIDAANMQ-IALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA--KR 390
               A  ++ + LGK               +     R L  + +   L N  + AD   KR
Sbjct: 1076 R--ALQLEELTLGK---------------DTPDNARTLNELGVLYYLQNNLETADQFLKR 1118

Query: 391  CLEIACGILDKKETISPE--EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448
             LE+      ++  + P+  + A + + ++       +++ A  L +R L +  +     
Sbjct: 1119 SLEM------RERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYERALDIRRRALAPD 1172

Query: 449  HSEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL 507
            H   + + + +  L    GK+ +A+P  E A E  ++SFGPKH  V     NL   Y ++
Sbjct: 1173 HPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQM 1232

Query: 508  DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
             +   A  ++  A  I + SLG  H    E  +NL+      G +  A E  +RA++
Sbjct: 1233 KKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEGGDFEKAAELYKRAME 1289

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Homo sapiens (taxid: 9606)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 42/371 (11%)

Query: 213  LANVKTAMGR-------REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNF 265
            LAN+   +GR         +A+  LQ+ LEI+E  L+ D   +  +   LA  +V    F
Sbjct: 920  LANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVHWRKF 979

Query: 266  KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG 325
              A     +A+EI +   G     VA +   L ++Y    ++++A +  + S K+ +   
Sbjct: 980  GNAEQLYKQAMEICENAYGPEHSTVARELDSLSLLYQKQNKYEQAEKLRKRSVKIRQK-- 1037

Query: 326  LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE-----KESETRALVFISMGKALC 380
                        A  +  +  F      LK    Q E     K+S   A     +G    
Sbjct: 1038 -----------TARQKGHMYGFA----LLKRRALQLEELTLGKDSTDCAKTLNELGVLYY 1082

Query: 381  NQEKFADAK----RCLEIACGILDKKETISPE--EVADAYSEISMQYESMNEFETAISLL 434
             Q     AK    R LE+      ++  + P+  + A + + ++  +    E+E+A  L 
Sbjct: 1083 LQNNLDAAKLFLTRSLEM------RQRVLGPDHPDCAQSLNNLAALHSERKEYESAEELY 1136

Query: 435  KRTLALLEKLPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV 493
            +R L + ++     H   + + + +  L    GK+ +A+P  E A E  ++SFGPKH  V
Sbjct: 1137 ERALDIRKRALAPDHPSLAYTLKHLAMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSV 1196

Query: 494  GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYT 553
                 NL   Y +L +   A  ++  A  + + SLG  H    E  +NL+      G + 
Sbjct: 1197 ATALVNLAVLYCQLKQHSDALPLYERALKVYEDSLGRLHPRVGETLKNLAVLSYEEGDFE 1256

Query: 554  LAIEFQQRAID 564
             A E  +RA++
Sbjct: 1257 KAAELYKRAME 1267

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 6/160 (3%)

Query: 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIP 473
           + +QY S   +E A+ L K+ L  LEK   + H    V+  +  L L+    GK  +A  
Sbjct: 226 LVIQYASQGRYEVAVPLCKQALEDLEKT--SGHDHPDVATMLNILALVYRDQGKYKEAAN 283

Query: 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533
            L  A    +++ GP H  V    NNL   Y +  + + A  +   A  I +  LG  H 
Sbjct: 284 LLNDALGIREKTLGPDHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALVIREKVLGKDHP 343

Query: 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH-GPS 572
           D  +   NL+    + G Y     + QRA++ ++   GP 
Sbjct: 344 DVAKQLNNLALLCQNQGKYEEVERYYQRALEIYQKELGPD 383

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Loligo pealeii (taxid: 1051067)

>sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 6/160 (3%)

Query: 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIP 473
           + +QY S   +E A+ L K+ L  LE+   + H    V+  +  L L+     K  +A  
Sbjct: 192 LVIQYASQGRYEVAVPLCKQALEDLERT--SGHDHPDVATMLNILALVYRDQNKYKEAAN 249

Query: 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533
            L  A     ++ G  H  V    NNL   Y +  + + A  +   A +I +  LG  H 
Sbjct: 250 LLNDALSIRGKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREKVLGKDHP 309

Query: 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH-GPS 572
           D  +   NL+    + G Y    ++ QRA+D +ES  GP 
Sbjct: 310 DVAKQLNNLALLCQNQGKYDEVEKYYQRALDIYESKLGPD 349

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Drosophila melanogaster (taxid: 7227)

>sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 10/193 (5%)

Query: 419 MQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIPYL 475
           +QY S + +E A+ L K+ L  LEK   + H    V+  +  L L+     K  +A   L
Sbjct: 223 IQYASQSRYEVAVPLCKQALEDLEKT--SGHDHPDVATMLNILALVYRDQNKYKEAGNLL 280

Query: 476 ESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535
             A    +++ GP H  V    NNL   Y +  + + A  +   A +I +  LG  H D 
Sbjct: 281 HDALAIREKTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 340

Query: 536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH-GPSAQDELREARRL----LEQLKIK 590
            +   NL+    + G Y     + QRA++ +E   GP   +  +    L    L+Q K K
Sbjct: 341 AKQLNNLALLCQNQGKYEEVEWYYQRALEIYEKKLGPDDPNVAKTKNNLAAAYLKQGKYK 400

Query: 591 ASGASINQLPTKA 603
           A+     Q+ T+A
Sbjct: 401 AAETLYKQVLTRA 413

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIP 473
           + +QY +   +E A+ L K+ L  LE+     H +  V+  +  L L+     K  +A  
Sbjct: 217 LVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD--VATMLNILALVYRDQNKYKEAAH 274

Query: 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533
            L  A    + + GP H  V    NNL   Y +  + + A  +   A +I +  LG +H 
Sbjct: 275 LLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHP 334

Query: 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH-GP 571
           D  +   NL+    + G Y     + QRA+  +E   GP
Sbjct: 335 DVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGP 373

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q68G30|KLC3_RAT Kinesin light chain 3 OS=Rattus norvegicus GN=Klc3 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIP 473
           + +QY S   +E A+ L ++ L  LE+   + H    V+  +  L L+     K  +A  
Sbjct: 213 LVIQYASQGRYEVAVPLCRQALEDLER--SSGHCHPDVATMLNILALVYRDQNKYKEATE 270

Query: 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533
            L  A +  +++ GP+H  V    NNL   Y +  R + A  +   A +I +  LG  H 
Sbjct: 271 LLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHP 330

Query: 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG 570
           D  +   NL+    + G +        RA+  +E+ G
Sbjct: 331 DVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALG 367

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
255583206	618	kinesin light chain, putative [Ricinus c	0.973	0.991	0.770	0.0
225437850	647	PREDICTED: nephrocystin-3 [Vitis vinifer	0.988	0.962	0.723	0.0
356548051	616	PREDICTED: nephrocystin-3-like [Glycine	0.922	0.943	0.713	0.0
449462455	634	PREDICTED: nephrocystin-3-like [Cucumis	0.987	0.981	0.700	0.0
297744126	527	unnamed protein product [Vitis vinifera]	0.825	0.986	0.804	0.0
449502044	634	PREDICTED: LOW QUALITY PROTEIN: nephrocy	0.987	0.981	0.699	0.0
356536829	615	PREDICTED: nephrocystin-3-like [Glycine	0.923	0.946	0.709	0.0
224082792	527	predicted protein [Populus trichocarpa]	0.814	0.973	0.781	0.0
297826567	616	tetratricopeptide repeat-containing prot	0.892	0.912	0.691	0.0
30684882	617	tetratricopeptide repeat-containing prot	0.898	0.917	0.685	0.0

>gi|255583206|ref|XP_002532368.1| kinesin light chain, putative [Ricinus communis] gi|223527924|gb|EEF30011.1| kinesin light chain, putative [Ricinus communis]

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/618 (77%), Positives = 539/618 (87%), Gaps = 5/618 (0%)

Query: 1   MKRASFSILSQLTRCRPQ-KLAPFLSKNYIHDLT--SSSSPLKSCTKAHGLEFRTHQPSH 57
           MKRAS S LS LTR +P+  L P L + YI   T    +  LKSCTK +GL  +  Q   
Sbjct: 1   MKRASISFLSHLTRQKPKITLTPLLPRTYISGTTLHPPTDHLKSCTKTNGLILKYRQFQA 60

Query: 58  TINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLK 117
             +  +    Q S+RQRKIKEKS LEEAFESA T++EMLQ FK+ME+SF+E ELGL  LK
Sbjct: 61  NPSEDIEKNLQISSRQRKIKEKSQLEEAFESADTADEMLQAFKEMETSFNEKELGLASLK 120

Query: 118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSL 177
           + LKLDQEG DPE  LSFA RALNVLD ++ N++PSLLVAM LQ+MGS NYS KRF+DSL
Sbjct: 121 LGLKLDQEGEDPEKALSFATRALNVLDNND-NSKPSLLVAMALQLMGSVNYSLKRFNDSL 179

Query: 178 GYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237
           GYLS+ANR+LGRLEEEG+  ++EDIKP++HAV LELANVKTAMGRREEALE+L+KCL+IK
Sbjct: 180 GYLSRANRVLGRLEEEGIS-NIEDIKPVLHAVQLELANVKTAMGRREEALENLRKCLQIK 238

Query: 238 ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL 297
           E+ LE+DS+ELGVANR+LAEA+VAVLNFKEALPFGLKALEIH+ GLG+NSVEVA DR+LL
Sbjct: 239 EMTLEKDSKELGVANRELAEAYVAVLNFKEALPFGLKALEIHRSGLGNNSVEVARDRKLL 298

Query: 298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGV 357
           GVIYSGLEEH+KALEQNELSQ+VLK WGLSS+LL AEIDAANMQIALG+++EAI+TLKGV
Sbjct: 299 GVIYSGLEEHEKALEQNELSQQVLKKWGLSSDLLHAEIDAANMQIALGRYDEAIDTLKGV 358

Query: 358 VRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEI 417
           V+QT+K+SETRALVFISM KALCNQEKFAD KRCLEIACGILDKKE +SP EVA+AYSEI
Sbjct: 359 VQQTDKDSETRALVFISMAKALCNQEKFADTKRCLEIACGILDKKEAVSPVEVAEAYSEI 418

Query: 418 SMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES 477
           +MQYE+MNEFETAISLLKRTL+LLEKLPQ QHSEGSVSARIGWLLLLTGKVPQAIPYLES
Sbjct: 419 AMQYETMNEFETAISLLKRTLSLLEKLPQEQHSEGSVSARIGWLLLLTGKVPQAIPYLES 478

Query: 478 AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIE 537
           AAERLKESFG KHFGVGYIYNNLGAAYLELDRPQSAAQ+FA AKDIMDV+LGPHHADSIE
Sbjct: 479 AAERLKESFGSKHFGVGYIYNNLGAAYLELDRPQSAAQMFAVAKDIMDVALGPHHADSIE 538

Query: 538 ACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGASIN 597
           ACQNLSKAY +MGSY LAIEFQ+R IDAWESHGP+ QDEL EA+RL EQLK KA GAS N
Sbjct: 539 ACQNLSKAYGAMGSYALAIEFQKRVIDAWESHGPTVQDELIEAQRLFEQLKAKARGASTN 598

Query: 598 QLPTKALPLPPTSVSGQS 615
           QL TKALPLP +S SG++
Sbjct: 599 QLATKALPLPHSSPSGRT 616

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437850|ref|XP_002263867.1| PREDICTED: nephrocystin-3 [Vitis vinifera]

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/654 (72%), Positives = 541/654 (82%), Gaps = 31/654 (4%)

Query: 1   MKRASFSILSQLTRCRPQKLAPFLSKNYIHDLTSSSSP--------------LKSCTKAH 46
           M+RAS  ++S L+  R   L P LS+NYI +L+ S S               ++ C KA 
Sbjct: 1   MRRASSKLVSHLSYYR--NLTPLLSRNYIPELSPSISANDHVSSLSSSSSNHIRPCKKAS 58

Query: 47  GL--------EFRTHQPSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQI 98
           GL         F+T+  S  +NT    PPQ S+RQRKIKE+S LEE FESA ++E ML+ 
Sbjct: 59  GLLLSKAKSDPFQTNS-SRNLNTQSETPPQISSRQRKIKERSQLEETFESATSTESMLKA 117

Query: 99  FKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAM 158
           F++MESSFDE ELGL  LK+ LK+DQEG DPE TL+FANRAL  LDK   N++PSLLVAM
Sbjct: 118 FQEMESSFDEKELGLASLKLGLKMDQEGEDPEKTLAFANRALKALDK---NDKPSLLVAM 174

Query: 159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKT 218
            LQ+MGSANYS KRF+DSLGYL++ANR+LGRLEEEG   SV+DI+P++HAV LELANVKT
Sbjct: 175 ALQLMGSANYSLKRFNDSLGYLNRANRVLGRLEEEG-SCSVDDIRPVLHAVQLELANVKT 233

Query: 219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278
           A+GRREEAL +L KCLEIKE+ LE+DS+ELG A RDLAEA  AVLNFKEALPF LKALEI
Sbjct: 234 AVGRREEALVNLTKCLEIKEMTLEKDSKELGAAYRDLAEAHTAVLNFKEALPFCLKALEI 293

Query: 279 HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAA 338
           HKK LGHNSVEVAHDRRLLGV+Y+GLEEHQKALEQNELSQKVLK WGLSSELLRAEIDAA
Sbjct: 294 HKKQLGHNSVEVAHDRRLLGVVYTGLEEHQKALEQNELSQKVLKNWGLSSELLRAEIDAA 353

Query: 339 NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398
           NMQIALGK++EAINTLKGVV++T+KESE RALVFISM KALCNQEKFAD+KRCLEIACG+
Sbjct: 354 NMQIALGKYDEAINTLKGVVQRTDKESENRALVFISMAKALCNQEKFADSKRCLEIACGV 413

Query: 399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARI 458
           LDK+E +SP EVA+AY EISMQYE+MNEFETAISLLKRTLA+LEKLPQ QHSEGSVSARI
Sbjct: 414 LDKREMVSPVEVAEAYMEISMQYETMNEFETAISLLKRTLAMLEKLPQEQHSEGSVSARI 473

Query: 459 GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518
           GWLLLLTGKV QAIPYLESAAERLKESFG KHFGVGYIYNNLGAAYLELDRPQSAAQ+FA
Sbjct: 474 GWLLLLTGKVAQAIPYLESAAERLKESFGSKHFGVGYIYNNLGAAYLELDRPQSAAQMFA 533

Query: 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELR 578
            AKDIMDVSLGPHHADSIEACQNLSKAY +MGSY LAIEFQQR IDAWE HGPSA +ELR
Sbjct: 534 VAKDIMDVSLGPHHADSIEACQNLSKAYGAMGSYVLAIEFQQRVIDAWEGHGPSAYEELR 593

Query: 579 EARRLLEQLKIKASGASINQLPTKALPLPPTSVSGQSSQ--PDVSINQKLTGAM 630
           EA+R+L +LK KA GA+ N+L TKALPLP ++ S  +     DV +++K +  +
Sbjct: 594 EAQRILTELKKKARGATSNELITKALPLPHSTGSAPTRNLPSDVPVDEKRSNVI 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548051|ref|XP_003542417.1| PREDICTED: nephrocystin-3-like [Glycine max]

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/603 (71%), Positives = 494/603 (81%), Gaps = 22/603 (3%)

Query: 24  LSKNYIHDLTSSSSPLKSCTKAHGLEFRTHQ-----PSHTINTLVGNPPQTSTRQRKIKE 78
            SK+Y     SS +P   CTK HGL  R +      P   + TLV       +RQRKI E
Sbjct: 20  FSKSY-----SSDAPFNRCTKTHGLLIRPNNKFATTPFRNMETLVQKSSPIPSRQRKIME 74

Query: 79  KSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANR 138
           KS L+EAFESA+T+EEML++F  ME  FDE ELGL  LKI LKLD EG DPE  LSFANR
Sbjct: 75  KSQLDEAFESAETTEEMLKVFSNMEGVFDERELGLASLKIGLKLDHEGEDPEKALSFANR 134

Query: 139 ALNVLDKDERNNR--PSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG 196
           AL  L+KD  NN    SL VAMCLQ++GS ++S KRFSDSLGYL++ANR+LGRL++EG G
Sbjct: 135 ALKALEKDNNNNNFPSSLPVAMCLQLLGSVSFSLKRFSDSLGYLNRANRVLGRLQDEG-G 193

Query: 197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLA 256
            SV+D++P++HAV LEL+NVK A+GRREEALE+L+KCLEIKE+  EEDS ELG  NRDLA
Sbjct: 194 VSVDDVRPVLHAVQLELSNVKNAVGRREEALENLRKCLEIKEMTFEEDSGELGKGNRDLA 253

Query: 257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL 316
           EA+VAVLNFKEALP+ LKALEIH K LG NSVEVAHDR+LLG++YSGLEEH+KALEQN L
Sbjct: 254 EAYVAVLNFKEALPYCLKALEIHMKRLGMNSVEVAHDRKLLGIVYSGLEEHEKALEQNVL 313

Query: 317 SQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMG 376
           +Q++LK W L+++LLRAEIDAANM IALG+++EA+ TLKGVV+QTEK+SET+ALV +SM 
Sbjct: 314 AQRILKNWNLNADLLRAEIDAANMMIALGRYDEAVGTLKGVVQQTEKDSETQALVLVSMA 373

Query: 377 KALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR 436
           KALCNQEKF D KRCLE++ GILDK+E I P EVA+AYSEISMQYE+MNEFETAISLLKR
Sbjct: 374 KALCNQEKFVDCKRCLEVSLGILDKRERICPVEVAEAYSEISMQYETMNEFETAISLLKR 433

Query: 437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYI 496
           TLALLEK PQ QHSEGSVSARIGWLLLLTGKV QAIPYLESAAERLK+SFGPKHFGVGYI
Sbjct: 434 TLALLEKQPQEQHSEGSVSARIGWLLLLTGKVQQAIPYLESAAERLKDSFGPKHFGVGYI 493

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
           YNNLGAAYLELDRPQSAAQ+FA AKDIMD SLGPHHAD+IEACQNLSKAY  MGSY LAI
Sbjct: 494 YNNLGAAYLELDRPQSAAQMFAVAKDIMDTSLGPHHADTIEACQNLSKAYGEMGSYVLAI 553

Query: 557 EFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGASI---------NQLPTKALPLP 607
           EFQQ+ +DAWESHG SA+DELRE +RLL+QLK KA  AS          N+LP KALPLP
Sbjct: 554 EFQQQVVDAWESHGASAEDELREGQRLLDQLKKKARDASANELHMKALPNELPMKALPLP 613

Query: 608 PTS 610
             S
Sbjct: 614 HKS 616

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462455|ref|XP_004148956.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/635 (70%), Positives = 525/635 (82%), Gaps = 13/635 (2%)

Query: 1   MKR-ASFSILSQLTRCRPQKLAPFLSKNYIHDLTSSSSP-----LKSCTKAHGLEFRTHQ 54
           M+R AS S+L    R   + L+  +S N I +L S+SSP     LK CT  +GL F+  +
Sbjct: 1   MRRNASISLLPYFNRLNLRSLSSLISPNSISNLPSNSSPVSTPNLKPCTINNGLFFKFTR 60

Query: 55  ----PSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETE 110
               PS  ++TLV   P+ S+RQRK+K+KS LEE+FESA+T +EM + FK+MES+F+E +
Sbjct: 61  FQANPSRNLDTLVEKRPEISSRQRKLKDKSVLEESFESAETVDEMFKAFKEMESAFEEKD 120

Query: 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSF 170
           LGL  LKIALKLD+EG DPE  L +A+RAL  LDKD+  N PSL VAM LQ++GS NYS 
Sbjct: 121 LGLASLKIALKLDREGEDPEQVLLYADRALKALDKDDNRN-PSLPVAMTLQLIGSVNYSL 179

Query: 171 KRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHL 230
           KRFSDSLGYL++ANR+LG+LEE+G   S EDI+P++HAV LELANVKTAMGRREEAL +L
Sbjct: 180 KRFSDSLGYLNRANRILGQLEEKGY--SAEDIRPVLHAVLLELANVKTAMGRREEALSNL 237

Query: 231 QKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV 290
           +KCLEIKEL+LE+DSRELG ANRDLAEA+VA+LNFK+ALPF +K LEIHKK LG+NSVEV
Sbjct: 238 RKCLEIKELMLEKDSRELGTANRDLAEAYVAILNFKDALPFCMKGLEIHKKELGNNSVEV 297

Query: 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEA 350
           AHDRRLLGVIYSGLEE+QKALEQNELS+KVLK WGL+S+LLRAE DAANMQIALG+++EA
Sbjct: 298 AHDRRLLGVIYSGLEEYQKALEQNELSRKVLKNWGLNSDLLRAETDAANMQIALGRYDEA 357

Query: 351 INTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410
           INTLK V + T+K+SE R +VF SMGK LCNQEKF DAKRCLEIA GI DK+E  SP E 
Sbjct: 358 INTLKDVAQHTDKDSELRGVVFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEA 417

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470
           A+AYSEISMQYE+MNEF+TAISLLK++LALLEKLPQ QHSEGSVSAR+GWLLLLTGKV +
Sbjct: 418 AEAYSEISMQYETMNEFDTAISLLKKSLALLEKLPQEQHSEGSVSARLGWLLLLTGKVQE 477

Query: 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530
           AIPYLE AAE LKESFG  HFGVGYIYNNLGAAYLEL+RPQSAAQ+FA AKDIMDVSLGP
Sbjct: 478 AIPYLEGAAETLKESFGSNHFGVGYIYNNLGAAYLELERPQSAAQMFAVAKDIMDVSLGP 537

Query: 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK 590
           HHADSIEAC NLSKAY +MGSY LAIEFQ++ +DAW+SHG SA+DELREARR LEQLK K
Sbjct: 538 HHADSIEACHNLSKAYGAMGSYALAIEFQEQVVDAWDSHGSSAEDELREARRTLEQLKRK 597

Query: 591 ASGASINQLPTKALPLPPTSVSGQSSQPDVSINQK 625
           A G S  +  TKALPLP +S S ++ QPD+   Q+
Sbjct: 598 ARGTSKFEHSTKALPLPQSSTSSKTLQPDLPTRQQ 632

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744126|emb|CBI37096.3| unnamed protein product [Vitis vinifera]

 Score =  861 bits (2224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/526 (80%), Positives = 470/526 (89%), Gaps = 6/526 (1%)

Query: 102 MESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQ 161
           MESSFDE ELGL  LK+ LK+DQEG DPE TL+FANRAL  LDK   N++PSLLVAM LQ
Sbjct: 1   MESSFDEKELGLASLKLGLKMDQEGEDPEKTLAFANRALKALDK---NDKPSLLVAMALQ 57

Query: 162 VMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMG 221
           +MGSANYS KRF+DSLGYL++ANR+LGRLEEEG   SV+DI+P++HAV LELANVKTA+G
Sbjct: 58  LMGSANYSLKRFNDSLGYLNRANRVLGRLEEEG-SCSVDDIRPVLHAVQLELANVKTAVG 116

Query: 222 RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK 281
           RREEAL +L KCLEIKE+ LE+DS+ELG A RDLAEA  AVLNFKEALPF LKALEIHKK
Sbjct: 117 RREEALVNLTKCLEIKEMTLEKDSKELGAAYRDLAEAHTAVLNFKEALPFCLKALEIHKK 176

Query: 282 GLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQ 341
            LGHNSVEVAHDRRLLGV+Y+GLEEHQKALEQNELSQKVLK WGLSSELLRAEIDAANMQ
Sbjct: 177 QLGHNSVEVAHDRRLLGVVYTGLEEHQKALEQNELSQKVLKNWGLSSELLRAEIDAANMQ 236

Query: 342 IALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDK 401
           IALGK++EAINTLKGVV++T+KESE RALVFISM KALCNQEKFAD+KRCLEIACG+LDK
Sbjct: 237 IALGKYDEAINTLKGVVQRTDKESENRALVFISMAKALCNQEKFADSKRCLEIACGVLDK 296

Query: 402 KETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL 461
           +E +SP EVA+AY EISMQYE+MNEFETAISLLKRTLA+LEKLPQ QHSEGSVSARIGWL
Sbjct: 297 REMVSPVEVAEAYMEISMQYETMNEFETAISLLKRTLAMLEKLPQEQHSEGSVSARIGWL 356

Query: 462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK 521
           LLLTGKV QAIPYLESAAERLKESFG KHFGVGYIYNNLGAAYLELDRPQSAAQ+FA AK
Sbjct: 357 LLLTGKVAQAIPYLESAAERLKESFGSKHFGVGYIYNNLGAAYLELDRPQSAAQMFAVAK 416

Query: 522 DIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREAR 581
           DIMDVSLGPHHADSIEACQNLSKAY +MGSY LAIEFQQR IDAWE HGPSA +ELREA+
Sbjct: 417 DIMDVSLGPHHADSIEACQNLSKAYGAMGSYVLAIEFQQRVIDAWEGHGPSAYEELREAQ 476

Query: 582 RLLEQLKIKASGASINQLPTKALPLPPTSVSGQSSQ--PDVSINQK 625
           R+L +LK KA GA+ N+L TKALPLP ++ S  +     DV +++K
Sbjct: 477 RILTELKKKARGATSNELITKALPLPHSTGSAPTRNLPSDVPVDEK 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502044|ref|XP_004161528.1| PREDICTED: LOW QUALITY PROTEIN: nephrocystin-3-like [Cucumis sativus]

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/635 (69%), Positives = 524/635 (82%), Gaps = 13/635 (2%)

Query: 1   MKR-ASFSILSQLTRCRPQKLAPFLSKNYIHDLTSSSSP-----LKSCTKAHGLEFRTHQ 54
           M+R AS S+L    R   + L+  +S N I +L S+SSP     LK CT  +GL F+  +
Sbjct: 1   MRRNASISLLPYFNRLNLRSLSSLISPNSISNLPSNSSPVSTPNLKPCTINNGLFFKFTR 60

Query: 55  ----PSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETE 110
               PS  ++TLV   P+ S+RQRK+K+KS LEE+FESA+T +EM + FK+MES+F+E +
Sbjct: 61  FQANPSRNLDTLVEKRPEISSRQRKLKDKSVLEESFESAETVDEMFKAFKEMESAFEEKD 120

Query: 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSF 170
           LGL  LKIALKLD+EG DPE  L +A+RAL  LDKD+  N PSL VAM LQ++GS NYS 
Sbjct: 121 LGLASLKIALKLDREGEDPEQVLLYADRALKALDKDDNRN-PSLPVAMTLQLIGSVNYSL 179

Query: 171 KRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHL 230
           KRFSDSLGYL++ANR+LG+LEE+G   S EDI+P++HAV LELANVKTAMGRREEAL +L
Sbjct: 180 KRFSDSLGYLNRANRILGQLEEKGY--SAEDIRPVLHAVLLELANVKTAMGRREEALSNL 237

Query: 231 QKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV 290
           +KCLEIKEL+LE+DSRELG ANRDLAEA+VA+LNFK+ALPF +K LEIHKK LG+NSVEV
Sbjct: 238 RKCLEIKELMLEKDSRELGTANRDLAEAYVAILNFKDALPFCMKGLEIHKKELGNNSVEV 297

Query: 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEA 350
           AHDRRLLGVIYSGLEE+QKA EQNELS+KVLK WGL+S+LLRAE DAANMQIALG+++EA
Sbjct: 298 AHDRRLLGVIYSGLEEYQKAXEQNELSRKVLKNWGLNSDLLRAETDAANMQIALGRYDEA 357

Query: 351 INTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410
           INTLK V + T+K+SE R +VF SMGK LCNQEKF DAKRCLEIA GI DK+E  SP E 
Sbjct: 358 INTLKDVAQHTDKDSELRGVVFXSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEA 417

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470
           A+AYSEISMQYE+MNEF+TAISLLK++LALLEKLPQ QHSEGSVSAR+GWLLLLTGKV +
Sbjct: 418 AEAYSEISMQYETMNEFDTAISLLKKSLALLEKLPQEQHSEGSVSARLGWLLLLTGKVQE 477

Query: 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530
           AIPYLE AAE LKESFG  HFGVGYIYNNLGAAYLEL+RPQSAAQ+FA AKDIMDVSLGP
Sbjct: 478 AIPYLEGAAETLKESFGSNHFGVGYIYNNLGAAYLELERPQSAAQMFAVAKDIMDVSLGP 537

Query: 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK 590
           HHADSIEAC NLSKAY +MGSY LAIEFQ++ +DAW+SHG SA+DELREARR LEQLK K
Sbjct: 538 HHADSIEACHNLSKAYGAMGSYALAIEFQEQVVDAWDSHGSSAEDELREARRTLEQLKRK 597

Query: 591 ASGASINQLPTKALPLPPTSVSGQSSQPDVSINQK 625
           A G S  +  TKALPLP +S S ++ QPD+   Q+
Sbjct: 598 ARGTSKFEHSTKALPLPQSSTSSKTLQPDLPTRQQ 632

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536829|ref|XP_003536936.1| PREDICTED: nephrocystin-3-like [Glycine max]

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/603 (70%), Positives = 492/603 (81%), Gaps = 21/603 (3%)

Query: 23  FLSKNYIHDLTSSSSPLKSCTKAHGLEFRTHQ-----PSHTINTLVGNPPQTSTRQRKIK 77
           + SK+Y     +S +P   CTK HGL  R +      P   ++TLV  P    +RQRKI 
Sbjct: 19  YFSKSY-----TSDAPFNCCTKTHGLLIRPNNKFATTPFRNMDTLVQKPSPIPSRQRKIM 73

Query: 78  EKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFAN 137
            KS LEEAFESA+T+EEML+ F  ME  F+E ELGL  LKI LKLD EG DPE  LSFA 
Sbjct: 74  GKSQLEEAFESAETTEEMLKAFSNMEGVFEERELGLASLKIGLKLDHEGEDPEKALSFAK 133

Query: 138 RALNVLDKDERNNRPSLL-VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG 196
           RAL  L+KD  NN PS L VAMCLQ++GS ++S KRFSDSLGYL++ANR+L RL++ G+ 
Sbjct: 134 RALKALEKDNNNNTPSSLPVAMCLQLLGSVSFSLKRFSDSLGYLNRANRVLARLQDVGVV 193

Query: 197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLA 256
            SV D++P++HAV LELANVK AMGRREEALE+L+KCLEIKE+  EEDS ELG  NRDLA
Sbjct: 194 -SVYDVRPVLHAVQLELANVKNAMGRREEALENLRKCLEIKEVTFEEDSGELGKGNRDLA 252

Query: 257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL 316
           EA+VAVLNFKEALP+ LKALEIH KGLG NSVEVAHDR+LLG++YSGLEEH+KALEQN L
Sbjct: 253 EAYVAVLNFKEALPYCLKALEIHIKGLGMNSVEVAHDRKLLGIVYSGLEEHEKALEQNVL 312

Query: 317 SQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMG 376
           +Q++LK W L+++LLRAEIDAANM IALG+++EA+ TLKGVV+QTEK+SETRALV +SM 
Sbjct: 313 AQRILKNWNLNADLLRAEIDAANMMIALGRYDEAVCTLKGVVQQTEKDSETRALVLVSMA 372

Query: 377 KALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR 436
           KALCNQEKF D K CLE++ GILDK+E ISP EVA+AYSEISMQYE+MNEFETAISLLKR
Sbjct: 373 KALCNQEKFVDCKSCLEVSLGILDKRERISPVEVAEAYSEISMQYETMNEFETAISLLKR 432

Query: 437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYI 496
           TLALLE  PQ QHSEGS+SARIGWLLLLTGKV QAIPYLESAAERLK+SFGPKHFGVGYI
Sbjct: 433 TLALLEMQPQEQHSEGSISARIGWLLLLTGKVQQAIPYLESAAERLKDSFGPKHFGVGYI 492

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
           YNNLGAAYLELDRPQSAAQ+FA AKDIMD SLGPHHAD+IE+CQNLSKAY  MGSY LAI
Sbjct: 493 YNNLGAAYLELDRPQSAAQMFAVAKDIMDTSLGPHHADTIESCQNLSKAYGEMGSYVLAI 552

Query: 557 EFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGASI---------NQLPTKALPLP 607
           EFQQ+ +DAWESHG SA+DE REA+RLLEQLK KA  AS          N+LP KALPLP
Sbjct: 553 EFQQQVVDAWESHGASAEDEFREAQRLLEQLKKKARDASANELHMKALPNELPIKALPLP 612

Query: 608 PTS 610
             S
Sbjct: 613 HKS 615

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082792|ref|XP_002306840.1| predicted protein [Populus trichocarpa] gi|222856289|gb|EEE93836.1| predicted protein [Populus trichocarpa]

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/516 (78%), Positives = 455/516 (88%), Gaps = 3/516 (0%)

Query: 102 MESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQ 161
           ME+ FDE ELGL  LK+ LKLDQ+G DPE  L+FA RAL VLD    +++PS LVAM LQ
Sbjct: 1   MEACFDERELGLALLKVGLKLDQQGEDPEKALTFATRALKVLDIG--DDKPSFLVAMTLQ 58

Query: 162 VMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMG 221
           +MGS +YS KRF+DSLGYL++A R+LGRLEEEG   +VEDI+P++HAV LEL+NVKTAMG
Sbjct: 59  LMGSVSYSLKRFNDSLGYLNRAKRILGRLEEEGTT-NVEDIRPVLHAVLLELSNVKTAMG 117

Query: 222 RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK 281
           RREEA+++L+KCLEIKEL +++ S+ELGVANR+LAEA+VAVLNF EALPFGLKAL+IHK 
Sbjct: 118 RREEAIDNLKKCLEIKELTMDKGSKELGVANRELAEAYVAVLNFNEALPFGLKALDIHKS 177

Query: 282 GLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQ 341
           GLG  SVEVA+DR+LLGVIYSGLEEH KALEQN LSQKVLK+WGL SELL AEIDAANMQ
Sbjct: 178 GLGDYSVEVAYDRKLLGVIYSGLEEHDKALEQNVLSQKVLKSWGLRSELLHAEIDAANMQ 237

Query: 342 IALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDK 401
           IALGK++EAINTLKGVV+QTEK+  TRALVFISM KALC+ EK ADAKRCLEIACGILDK
Sbjct: 238 IALGKYDEAINTLKGVVQQTEKDGGTRALVFISMAKALCHLEKIADAKRCLEIACGILDK 297

Query: 402 KETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL 461
           KET SP EVA+AYSEI+M YE+MNEFETAISLLKRT ++LEKLPQ QHSEGSVSARIGWL
Sbjct: 298 KETASPVEVAEAYSEIAMLYENMNEFETAISLLKRTQSMLEKLPQEQHSEGSVSARIGWL 357

Query: 462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK 521
           LLLTGKV QAIPYLESAAE LKESFG KHFG+GY+YNNLGAAYLELDRPQSAAQ+FA AK
Sbjct: 358 LLLTGKVTQAIPYLESAAEMLKESFGSKHFGIGYVYNNLGAAYLELDRPQSAAQMFAVAK 417

Query: 522 DIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREAR 581
           DIMD +LGPHHADSIEA QNLSKAYS+MGSYTLAIEFQQRAIDAWESHGPSA D L EAR
Sbjct: 418 DIMDAALGPHHADSIEAYQNLSKAYSAMGSYTLAIEFQQRAIDAWESHGPSAHDMLMEAR 477

Query: 582 RLLEQLKIKASGASINQLPTKALPLPPTSVSGQSSQ 617
           R+ EQLK KA  AS NQLPTKALPLP +  SG++ +
Sbjct: 478 RIREQLKTKARDASTNQLPTKALPLPHSGPSGRNEE 513

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826567|ref|XP_002881166.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327005|gb|EFH57425.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/573 (69%), Positives = 481/573 (83%), Gaps = 11/573 (1%)

Query: 42  CTKAHGL---EFRTHQPSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQI 98
           C + +G+   +F  + P    NT V  PP+ S+     KEK DLEEAFESA T++EM+++
Sbjct: 50  CRRTNGMIKSQFWVN-PYRNFNTHVEEPPELSSSD---KEKIDLEEAFESANTTDEMVRL 105

Query: 99  FKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAM 158
           FK+ME +F+  ELGL  LK+ L LD+EG DPE  LS+A++AL   D D   N+P+LLVAM
Sbjct: 106 FKEMELTFEGNELGLSALKLGLHLDREGDDPEKVLSYADKALKSFDGD--GNKPNLLVAM 163

Query: 159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKT 218
            LQ+MGSANY  KRFSDSLGYL++ANR+L +LE +G    VED++P++HAV LELANVK 
Sbjct: 164 ALQLMGSANYGLKRFSDSLGYLNRANRILVKLEADG-DCVVEDVRPVLHAVQLELANVKN 222

Query: 219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278
           AMGRREEA+E+L+K LEIKE+  +EDS+E+GVANR LA+A+VAVLNF EALP+ LKALEI
Sbjct: 223 AMGRREEAIENLKKSLEIKEMTFDEDSKEMGVANRSLADAYVAVLNFDEALPYALKALEI 282

Query: 279 HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAA 338
           HKK LG+NS EVA DRRLLGVIYSGLE+H KALEQN LSQ+VLK WG+  EL+RAEIDAA
Sbjct: 283 HKKELGNNSAEVAQDRRLLGVIYSGLEQHDKALEQNRLSQRVLKNWGMKLELIRAEIDAA 342

Query: 339 NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398
           NM++ALGK+EEAI+ LK VV+QTEK+SE RA+VFISM KAL NQ+KFAD+K+CLE AC I
Sbjct: 343 NMKVALGKYEEAIDILKSVVQQTEKDSEMRAMVFISMSKALVNQQKFADSKKCLEFACEI 402

Query: 399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARI 458
           L+KKET SP EVA+AYSE++MQYESMNEFETAISLL++TL++LEKLPQ QHSEGSVSARI
Sbjct: 403 LEKKETASPVEVAEAYSEVAMQYESMNEFETAISLLQKTLSILEKLPQEQHSEGSVSARI 462

Query: 459 GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518
           GWLLL +G+V QA+PYLESAAERLKESFG KHFGVGY+YNNLGAAYLEL RPQSAAQ+FA
Sbjct: 463 GWLLLFSGRVSQAVPYLESAAERLKESFGAKHFGVGYVYNNLGAAYLELGRPQSAAQMFA 522

Query: 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELR 578
            AKDIMDVSLGP+H DSI+ACQNLSKAY+ MG+Y+LA+EFQQR IDAW++HG SA+DE++
Sbjct: 523 VAKDIMDVSLGPNHVDSIDACQNLSKAYAGMGNYSLAVEFQQRVIDAWDNHGDSAKDEMK 582

Query: 579 EARRLLEQLKIKA-SGASINQLPTKALPLPPTS 610
           EA+RLLE L++KA  G S N+L  KALPLP TS
Sbjct: 583 EAKRLLEDLRLKARGGVSTNKLLNKALPLPKTS 615

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684882|ref|NP_850163.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|17380952|gb|AAL36288.1| putative kinesin light chain [Arabidopsis thaliana] gi|330253419|gb|AEC08513.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/575 (68%), Positives = 477/575 (82%), Gaps = 9/575 (1%)

Query: 41  SCTKAHGLEFRTH--QPSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQI 98
           SC + + L  R     P   +NT V  PP+ S+     KEK DLEEAFESA T++EM+++
Sbjct: 48  SCRRTNDLIKRQFWVNPYRNLNTHVEEPPEISSSD---KEKIDLEEAFESANTTDEMVRL 104

Query: 99  FKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAM 158
           FK+ME SF+  ELGL  LK+ L LD+EG DPE  LS+A++AL   D D   N+P+LLVAM
Sbjct: 105 FKEMELSFEGNELGLSALKLGLHLDREGEDPEKVLSYADKALKSFDGD--GNKPNLLVAM 162

Query: 159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKT 218
             Q+MGSANY  KRFSDSLGYL++ANR+L +LE +G    VED++P++HAV LELANVK 
Sbjct: 163 ASQLMGSANYGLKRFSDSLGYLNRANRILVKLEADG-DCVVEDVRPVLHAVQLELANVKN 221

Query: 219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278
           AMGRREEA+E+L+K LEIKE+  +EDS+E+GVANR LA+A+VAVLNF EALP+ LKALEI
Sbjct: 222 AMGRREEAIENLKKSLEIKEMTFDEDSKEMGVANRSLADAYVAVLNFNEALPYALKALEI 281

Query: 279 HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAA 338
           HKK LG+NS EVA DRRLLGVIYSGLE+H KALEQN LSQ+VLK WG+  EL+RAEIDAA
Sbjct: 282 HKKELGNNSAEVAQDRRLLGVIYSGLEQHDKALEQNRLSQRVLKNWGMKLELIRAEIDAA 341

Query: 339 NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398
           NM++ALGK+EEAI+ LK VV+QT+K+SE RA+VFISM KAL NQ+KFA++KRCLE AC I
Sbjct: 342 NMKVALGKYEEAIDILKSVVQQTDKDSEMRAMVFISMSKALVNQQKFAESKRCLEFACEI 401

Query: 399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARI 458
           L+KKET  P EVA+AYSE++MQYESMNEFETAISLL++TL +LEKLPQ QHSEGSVSARI
Sbjct: 402 LEKKETALPVEVAEAYSEVAMQYESMNEFETAISLLQKTLGILEKLPQEQHSEGSVSARI 461

Query: 459 GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518
           GWLLL +G+V QA+PYLESAAERLKESFG KHFGVGY+YNNLGAAYLEL RPQSAAQ+FA
Sbjct: 462 GWLLLFSGRVSQAVPYLESAAERLKESFGAKHFGVGYVYNNLGAAYLELGRPQSAAQMFA 521

Query: 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELR 578
            AKDIMDVSLGP+H DSI+ACQNLSKAY+ MG+Y+LA+EFQQR I+AW++HG SA+DE++
Sbjct: 522 VAKDIMDVSLGPNHVDSIDACQNLSKAYAGMGNYSLAVEFQQRVINAWDNHGDSAKDEMK 581

Query: 579 EARRLLEQLKIKA-SGASINQLPTKALPLPPTSVS 612
           EA+RLLE L++KA  G S N+L  KALPLP  S S
Sbjct: 582 EAKRLLEDLRLKARGGVSTNKLLNKALPLPKPSHS 616

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
TAIR|locus:2042506	617	AT2G31240 "AT2G31240" [Arabido	0.961	0.982	0.610	3.8e-188
TAIR|locus:2015959	650	KLCR3 "AT1G27500" [Arabidopsis	0.766	0.743	0.252	2.8e-31
TAIR|locus:2086834	663	KLCR2 "kinesin light chain-rel	0.722	0.686	0.265	1.5e-30
TAIR|locus:2123411	609	KLCR1 "kinesin light chain-rel	0.825	0.853	0.244	5.3e-30
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.577	0.282	0.224	1.8e-09
UNIPROTKB|Q6AZT7	1300	nphp3 "Nephrocystin-3" [Xenopu	0.476	0.230	0.246	7.6e-08
UNIPROTKB|A0JM23	1311	nphp3 "Nephrocystin-3" [Xenopu	0.476	0.228	0.249	6.3e-07
UNIPROTKB|F1SNS5	293	F1SNS5 "Uncharacterized protei	0.163	0.351	0.320	2.7e-06
UNIPROTKB|E1BSU8	1316	NPHP3 "Uncharacterized protein	0.476	0.227	0.230	8.7e-06
ASPGD|ASPL0000046994	1262	AN9426 [Emericella nidulans (t	0.466	0.232	0.206	2.2e-05

TAIR|locus:2042506 AT2G31240 "AT2G31240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1824 (647.1 bits), Expect = 3.8e-188, P = 3.8e-188
 Identities = 380/622 (61%), Positives = 460/622 (73%)

Query:     1 MKRASFSILSQLT--RCRPQKLAPFLSKNYIHDLTSSS-SPLK----SCTKAHGLEFRTH 53
             MK  S S++ +L   + RP  L+  L+       +SS  SP +    SC + + L  R  
Sbjct:     1 MKSLSISLIRRLHFHKIRPIPLSIHLNAASSSSSSSSLISPAREISTSCRRTNDLIKRQF 60

Query:    54 --QPSHTINTLVGNPPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETEL 111
                P   +NT V  PP+ S+     KEK DLEEAFESA T++EM+++FK+ME SF+  EL
Sbjct:    61 WVNPYRNLNTHVEEPPEISSSD---KEKIDLEEAFESANTTDEMVRLFKEMELSFEGNEL 117

Query:   112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFK 171
             GL  LK+ L LD+EG DPE  LS+A++AL   D D   N+P+LLVAM  Q+MGSANY  K
Sbjct:   118 GLSALKLGLHLDREGEDPEKVLSYADKALKSFDGD--GNKPNLLVAMASQLMGSANYGLK 175

Query:   172 RFSDSLGYLSKANRMXXXXXXXXXXXSVEDIKPIMHAVHLELANVKTAMGRREEALEHXX 231
             RFSDSLGYL++ANR+            VED++P++HAV LELANVK AMGRREEA+E+  
Sbjct:   176 RFSDSLGYLNRANRILVKLEADGDCV-VEDVRPVLHAVQLELANVKNAMGRREEAIENLK 234

Query:   232 XXXXXXXXXXXXDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA 291
                         DS+E+GVANR LA+A+VAVLNF EALP+ LKALEIHKK LG+NS EVA
Sbjct:   235 KSLEIKEMTFDEDSKEMGVANRSLADAYVAVLNFNEALPYALKALEIHKKELGNNSAEVA 294

Query:   292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI 351
              DRRLLGVIYSGLE+H KALEQN LSQ+VLK WG+  EL+RAEIDAANM++ALGK+EEAI
Sbjct:   295 QDRRLLGVIYSGLEQHDKALEQNRLSQRVLKNWGMKLELIRAEIDAANMKVALGKYEEAI 354

Query:   352 NTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVA 411
             + LK VV+QT+K+SE RA+VFISM KAL NQ+KFA++KRCLE AC IL+KKET  P EVA
Sbjct:   355 DILKSVVQQTDKDSEMRAMVFISMSKALVNQQKFAESKRCLEFACEILEKKETALPVEVA 414

Query:   412 DAYSEISMQYESMNEFETAISXXXXXXXXXXXXPQAQHSEGSVSARIGWLLLLTGKVPQA 471
             +AYSE++MQYESMNEFETAIS            PQ QHSEGSVSARIGWLLL +G+V QA
Sbjct:   415 EAYSEVAMQYESMNEFETAISLLQKTLGILEKLPQEQHSEGSVSARIGWLLLFSGRVSQA 474

Query:   472 IPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531
             +PYLESAAERLKESFG KHFGVGY+YNNLGAAYLEL RPQSAAQ+FA AKDIMDVSLGP+
Sbjct:   475 VPYLESAAERLKESFGAKHFGVGYVYNNLGAAYLELGRPQSAAQMFAVAKDIMDVSLGPN 534

Query:   532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDXXXXXXXXXXQLKIKA 591
             H DSI+ACQNLSKAY+ MG+Y+LA+EFQQR I+AW++HG SA+D           L++KA
Sbjct:   535 HVDSIDACQNLSKAYAGMGNYSLAVEFQQRVINAWDNHGDSAKDEMKEAKRLLEDLRLKA 594

Query:   592 -SGASINQLPTKALPLPPTSVS 612
               G S N+L  KALPLP  S S
Sbjct:   595 RGGVSTNKLLNKALPLPKPSHS 616

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2015959 KLCR3 "AT1G27500" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 2.8e-31, P = 2.8e-31
 Identities = 125/496 (25%), Positives = 210/496 (42%)

Query:   103 ESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQV 162
             E S +  EL    L  A  L   G      L   +RA  + +    N +P L   MCL V
Sbjct:   138 EPSSENVELARFLLNQARNLVSSGDSTHKALELTHRAAKLFEASAENGKPCLEWIMCLHV 197

Query:   163 MGSANYSFKRFSDSLGYLSKANRMXXXXXXXXXXXSVEDIKPIMHAVHLELANVKTAMGR 222
               + +   K +++++  L ++  +             E+      A  ++L +    +G+
Sbjct:   198 TAAVHCKLKEYNEAIPVLQRSVEIPVVEEG-------EEHALAKFAGLMQLGDTYAMVGQ 250

Query:   223 REEALEHXXXXXXXXXXXXXXDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282
              E ++                +   +G   R LAEA V  L F EA      AL IH++ 
Sbjct:   251 LESSISCYTEGLNIQKKVLGENDPRVGETCRYLAEALVQALRFDEAQQVCETALSIHRES 310

Query:   283 LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI 342
                 S+  A DRRL+G+I     +H+ ALE   L+   +   G  SE+   +    +  +
Sbjct:   311 GLPGSIAEAADRRLMGLICETKGDHENALEHLVLASMAMAANGQESEVAFVDTSIGDSYL 370

Query:   343 ALGKFEEAINTL-KGVVR-QTEKESETRAL--VFISMGKALCNQEKFADAKRCLEIACGI 398
             +L +F+EAI    K +   +T K     A+  V+I +        K  +AK   E A  I
Sbjct:   371 SLSRFDEAICAYQKSLTALKTAKGENHPAVGSVYIRLADLYNRTGKVREAKSYCENALRI 430

Query:   399 LDKKET-ISPEEVADAYSEISMQYESMNEFETAISXXXXXXXXXXXXPQAQHSEGSVSAR 457
              +     ISPEE+A   ++IS+  ESMNE E AI+            P  +     + A+
Sbjct:   431 YESHNLEISPEEIASGLTDISVICESMNEVEQAITLLQKALKIYADSPGQKIMIAGIEAQ 490

Query:   458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
             +G L  + GK  ++    +SA  +L+ +   +    G   N +G A ++LD  + A ++F
Sbjct:   491 MGVLYYMMGKYMESYNTFKSAISKLRATGKKQSTFFGIALNQMGLACIQLDAIEEAVELF 550

Query:   518 AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDXX 577
               AK I++   GP+H +++    NL+ AY ++G    AI+     +   E    +A    
Sbjct:   551 EEAKCILEQECGPYHPETLGLYSNLAGAYDAIGRLDDAIKLLGHVVGVREEKLGTANPVT 610

Query:   578 XXXXXXXXQLKIKASG 593
                     QL +K +G
Sbjct:   611 EDEKRRLAQL-LKEAG 625

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2086834 KLCR2 "kinesin light chain-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 126/474 (26%), Positives = 214/474 (45%)

Query:   105 SFDET--ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDK-DERNNRPSLLVAMCLQ 161
             S DE   ELG+V LK A +L   G +    L  A RA+ V +K  E   +  L + M L 
Sbjct:   145 SVDEESPELGVVLLKQARELVSSGENLNKALDLALRAVKVFEKCGEGEKQLGLNLVMSLH 204

Query:   162 VMGSANYSFKRFSDSLGYLSKANRMXXXXXXXXXXXSVEDIKPIMHAVHLELANVKTAMG 221
             ++ +      R++D++  L ++  +             ED      A  ++L ++   MG
Sbjct:   205 ILAAIYAGLGRYNDAVPVLERSIEIPMIEDG-------EDHALAKFAGCMQLGDMYGLMG 257

Query:   222 RREEALE-HXXXXXXXXXXXXXXDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280
             + E ++  +              D+R +G   R LAEA V  + F+EA      AL+IHK
Sbjct:   258 QVENSIMLYTAGLEIQRQVLGESDAR-VGETCRYLAEAHVQAMQFEEASRLCQMALDIHK 316

Query:   281 K-GLGHN-SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAA 338
             + G     S+E A DR+L+G+I     +++ ALE   L+   + +     ++   +    
Sbjct:   317 ENGAAATASIEEAADRKLMGLICDAKGDYEVALEHYVLASMAMSSQNHREDVAAVDCSIG 376

Query:   339 NMQIALGKFEEAINTLK---GVVRQTEKESETR-ALVFISMGKALCNQEKFADAKRCLEI 394
             +  ++L +F+EAI   +    V +Q + E+ +  ALV++ +        K  D+K   E 
Sbjct:   377 DAYMSLARFDEAIFAYQKALAVFKQGKGETHSSVALVYVRLADLYNKIGKTRDSKSYCEN 436

Query:   395 ACGILDKKETISP-EEVADAYSEISMQYESMNEFETAISXXXXXXXXXXXXPQAQHSEGS 453
             A  I  K    +P EEVA  + EIS  Y+SMNE + A+             P  Q++   
Sbjct:   437 ALKIYLKPTPGTPMEEVATGFIEISAIYQSMNELDQALKLLRRALKIYANAPGQQNTIAG 496

Query:   454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSA 513
             + A++G +  + G   ++    +SA  + + S   K    G   N +G A ++      A
Sbjct:   497 IEAQMGVVTYMMGNYSESYDIFKSAISKFRNSGEKKTALFGIALNQMGLACVQRYAINEA 556

Query:   514 AQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567
             A +F  AK I++   GP+H D++    NL+  Y +MG    AIE  +  +   E
Sbjct:   557 ADLFEEAKTILEKECGPYHPDTLAVYSNLAGTYDAMGRLDDAIEILEYVVGTRE 610

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2123411 KLCR1 "kinesin light chain-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 5.3e-30, P = 5.3e-30
 Identities = 134/548 (24%), Positives = 237/548 (43%)

Query:    66 PPQTSTRQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQE 125
             P  T +R +    +S  ++  +S   S     +    + S D  +LG   LK+A      
Sbjct:    41 PSSTPSRSKPSPNRSTGKK--DSPTVSSSTAAVIDVDDPSLDNPDLGPFLLKLARDAIAS 98

Query:   126 GGDPEMTLSFANRALNVLDK----------DERNNRPSLLVAMCLQVMGSANYSFKRFSD 175
             G  P   L +A RA    ++             +  P L +AM L V+ +   S  RF +
Sbjct:    99 GEGPNKALDYAIRATKSFERCCAAVAPPIPGGSDGGPVLDLAMSLHVLAAIYCSLGRFDE 158

Query:   176 SLGYLSKANRMXXXXXXXXXXXSVEDIKPIMHAVHLELANVKTAMGRREEALE-HXXXXX 234
             ++  L +A ++              D      + H++L +  + +G+ + ++  +     
Sbjct:   159 AVPPLERAIQVPDPTRG-------PDHSLAAFSGHMQLGDTLSMLGQIDRSIACYEEGLK 211

Query:   235 XXXXXXXXXDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR 294
                      D R +G   R LAEA+V  + F +A     K LEIH+      S+E A DR
Sbjct:   212 IQIQTLGDTDPR-VGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLEEAADR 270

Query:   295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTL 354
             RL+ +I     +++ ALE   L+   +   G  SE+   ++   N+ ++L +F+EA+ + 
Sbjct:   271 RLMAIICEAKGDYENALEHLVLASMAMIASGQESEVASIDVSIGNIYMSLCRFDEAVFSY 330

Query:   355 KG---VVRQTEKESE-TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET-ISPEE 409
             +    V + ++ E+  T A VF+ + +      K  ++K   E A  I +K     + EE
Sbjct:   331 QKALTVFKASKGETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKPVPGTTVEE 390

Query:   410 VADAYSEISMQYESMNEFETAISXXXXXXXXXXXXPQAQHSEGSVSARIGWLLLLTGKVP 469
             +A   +EIS  YES++E E A+             P  Q +   + AR+G +    G+  
Sbjct:   391 IAGGLTEISAIYESVDEPEEALKLLQKSMKLLEDKPGQQSAIAGLEARMGVMYYTVGRYE 450

Query:   470 QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG 529
              A    ESA  +L+ + G K    G + N +G A ++L +   A ++F  A+ I++   G
Sbjct:   451 DARNAFESAVTKLRAA-GEKSAFFGVVLNQMGLACVQLFKIDEAGELFEEARGILEQERG 509

Query:   530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDXXXXXXXXXXQLKI 589
             P   D++    NL+  Y +MG    AIE  ++ +   E    +A            +L +
Sbjct:   510 PCDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKLGTANPDFEDEKKRLAEL-L 568

Query:   590 KASGASIN 597
             K +G S N
Sbjct:   569 KEAGRSRN 576

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 176 (67.0 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 87/387 (22%), Positives = 153/387 (39%)

Query:   200 EDIKPIMHAVHLELANVKTAMGRREEALEHXXXXXXXXXXXXXXD-SRELGVANRDLAEA 258
             ED   I  A H  L N+ +   + +EA E               D +  L   N +L   
Sbjct:   747 EDRINIFGAFH-GLGNLYSDQRKLKEAEEMYQQALAGKEKALGPDHTSTLDTVN-NLGNL 804

Query:   259 FVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQ 318
             +      KEA     +AL   +K LG +          LG++YS   +  K  E  E+ Q
Sbjct:   805 YSDQGKLKEAEKMYQRALAGKEKALGPDHTSTLDTVNNLGILYS---DQGKLKEAEEMYQ 861

Query:   319 KVL----KTWGL--SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE---SETRA 369
             + L    K  G   +S L+    +  N+    GK +EA    +  ++  EK      T  
Sbjct:   862 RALAGYEKALGPDHTSTLVTVN-NLGNLYSDQGKLKEAEKMYQQALKGYEKALGPDHTST 920

Query:   370 LVFIS-MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVA--DAYSEISMQYESMNE 426
             L  ++ +G    NQ K  +A+   + A  +  K++ + P+  +  D  + + + Y++  +
Sbjct:   921 LDTVNNLGSLYKNQGKLKEAEEMYQQA--LAGKEKALGPDHTSTLDTVNNLGILYKNQGK 978

Query:   427 FETAISXXXXXXXXXXXXPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKES 485
              + A                  H+   ++   +G L    GK+ +A    + A    +++
Sbjct:   979 LKEAEEMYQRALAGKEKALGPDHTSTLMTVNNLGSLYSDQGKLKEAEKMYQQALAGYEKA 1038

Query:   486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA 545
              GP H       NNLG  Y +  + + A +++  A    + +LGP H  ++    NL   
Sbjct:  1039 LGPDHTSTLITVNNLGNLYSDQGKLKEAEKMYQQALAGYEKALGPDHTSTLVTVNNLGNL 1098

Query:   546 YSSMGSYTLAIEFQQRAIDAWESH-GP 571
             YS  G    A +  Q+A+  +E   GP
Sbjct:  1099 YSDQGKLKEAEKMYQQALAGYEKAVGP 1125

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|Q6AZT7 nphp3 "Nephrocystin-3" [Xenopus laevis (taxid:8355)]

 Score = 161 (61.7 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 78/317 (24%), Positives = 127/317 (40%)

Query:   255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314
             LA  ++    F  A     +ALEI +   G   + VA +   L V+Y    + Q   EQ 
Sbjct:   964 LAGVYMQSKKFGNAEQLYKQALEISENAYGSEHLRVARELDALAVLY----QKQNKFEQA 1019

Query:   315 E-LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTL-KGVVRQTEKESETRALVF 372
             E L +K LK    S+    +    A ++    + EE   TL K         +E   L +
Sbjct:  1020 EQLRKKSLKIRQKSARRKGSMYGFALLRRRALQLEEL--TLGKDTSDNARTLNELGVLYY 1077

Query:   373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAIS 432
             +     L   E F   KR LE+   +L       P+  A + + ++  Y    +++ A  
Sbjct:  1078 LQNN--LETAETFL--KRSLEMRERVLGADH---PD-CAQSINNLAALYNEKKQYDKAEE 1129

Query:   433 XXXXXXXXXXXXPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491
                             H   + + + +  L    GK+ +A+P  E A +  ++SFGPKH 
Sbjct:  1130 LYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHP 1189

Query:   492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551
              V     NL   Y ++ +   A  ++  A  I + SLG  H    E  +NL+      G 
Sbjct:  1190 SVATALVNLAVLYCQMKKQDDALPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGD 1249

Query:   552 YTLAIEFQQRAIDAWES 568
             Y  A E  +RA++  E+
Sbjct:  1250 YEKAAELYKRAMEIKET 1266

GO:0005929 "cilium" evidence=ISS

GO:0060027 "convergent extension involved in gastrulation" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IMP

UNIPROTKB|A0JM23 nphp3 "Nephrocystin-3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 164 (62.8 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
 Identities = 79/317 (24%), Positives = 128/317 (40%)

Query:   255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314
             LA  +V    F  A     +ALEI +   G   + VA +   L V+Y    + Q   EQ 
Sbjct:   975 LAGVYVQSKKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLY----QKQNKFEQA 1030

Query:   315 E-LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTL-KGVVRQTEKESETRALVF 372
             E L +K LK    S+    +    A ++    + EE   TL K         +E   L +
Sbjct:  1031 EQLRKKSLKIRQKSARRKGSMYGFALLRRRALQLEEL--TLGKDTSDNARTLNELGVLYY 1088

Query:   373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAIS 432
             +     L   E F   KR LE+   +L       P+  A + + ++  Y    +++ A  
Sbjct:  1089 LQNN--LETAETFL--KRSLEMRERVLGADH---PD-CAQSINNLAALYNEKKQYDKAEE 1140

Query:   433 XXXXXXXXXXXXPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491
                             H   + + + +  L    GK+ +A+P  E A E  ++SFGPKH 
Sbjct:  1141 LYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHP 1200

Query:   492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551
              V     NL   Y ++ +   A+ ++  A  I + SLG  H    E  +NL+      G 
Sbjct:  1201 SVATALVNLAVLYCQMKKQAEASPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGD 1260

Query:   552 YTLAIEFQQRAIDAWES 568
             +  A E  +RA++  E+
Sbjct:  1261 FEKAAELYKRAMEIKET 1277

GO:0005929 "cilium" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=ISS

UNIPROTKB|F1SNS5 F1SNS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 125 (49.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 33/103 (32%), Positives = 51/103 (49%)

Query:   466 GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525
             GK+ +A+P  E A E  ++SFGPKH  V     NL   Y ++ +   A  ++  A  I +
Sbjct:   135 GKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHIEALPLYERALKIYE 194

Query:   526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568
              SLG  H    E  +NL+      G +  A E  +RA++  E+
Sbjct:   195 DSLGRMHPRVGETLKNLAVLSYEEGDFEKAAELYKRAMEIKEA 237

GO:0005871 "kinesin complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E1BSU8 NPHP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 8.7e-06, P = 8.7e-06
 Identities = 73/317 (23%), Positives = 127/317 (40%)

Query:   255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314
             LA  +V    F  A     +ALEI +   G     VA +   L ++Y    + Q   EQ 
Sbjct:   977 LAGVYVQWKKFGNAEQLYKQALEISENAYGAEHPRVARELDALAMLY----QKQNKYEQA 1032

Query:   315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFIS 374
             E  +K  K++ +  +  R +        AL + + A+  L+ +    +     R L  + 
Sbjct:  1033 EQLRK--KSFKIRQKAARRKGSLCGF--ALLR-QRALQ-LEELTLGKDTPDNARTLNELG 1086

Query:   375 MGKALCNQEKFADA--KRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAIS 432
             +   L N  + A+   KR LE+   +L       P+  A + + ++  Y     ++ A  
Sbjct:  1087 VLYYLQNNLETAELFLKRSLEMRERVLGPNH---PD-CAQSLNNLAALYNEKKHYDKAEE 1142

Query:   433 XXXXXXXXXXXXPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491
                             H   + + + +  L    GK+ +A+P  E A E  ++SFGPKH 
Sbjct:  1143 LYEKALDIRRRALAPDHPSLAYTVKHLAVLYKKMGKLDKAVPLYELAVEIRQKSFGPKHP 1202

Query:   492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551
              V     NL   Y ++ +   A  ++  A  I + S G  H    E  +NL+      G 
Sbjct:  1203 SVATALVNLAVLYCQMKKQTEALPLYERALKIYEDSFGHMHPRVGETLKNLAVLSYEGGD 1262

Query:   552 YTLAIEFQQRAIDAWES 568
             +  A E  +RA++  E+
Sbjct:  1263 FEKAAELYKRAMEIKEA 1279

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

ASPGD|ASPL0000046994 AN9426 [Emericella nidulans (taxid:162425)]

 Score = 138 (53.6 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 66/319 (20%), Positives = 127/319 (39%)

Query:   265 FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGV--IYSGLEEHQKALEQNELSQKVLK 322
             + EA     + +E  KK LG       H   L  V  + S      +  E  EL ++V+K
Sbjct:   758 YNEAEKLQAQVIEARKKVLGPE-----HPSTLTSVHNLASTYRNQGRWSEAEELQEQVIK 812

Query:   323 TW----GLSSELLRAEI-DAANMQIALGKFEEAINTLKGVVRQTEK-----ESETRALVF 372
             TW    GL        + + A +    G+++EA   L  V+   ++       +T A V 
Sbjct:   813 TWKQVLGLKHPFTLTSMGNLALIYWNRGRWKEAEELLAQVMENRKQVLGLVHPDTLASVH 872

Query:   373 ISMGKALCNQEKFADAKRCLEIACGILD-KKETISPE--EVADAYSEISMQYESMNEFET 429
              ++     ++ ++ +A+   E+   +++ +K+ +  E  +   +   ++  Y +   ++ 
Sbjct:   873 -NLAATYLDRGRWKEAE---ELFVQLVETRKQVVGLEHPDTLTSMHNLASTYRNQGRWKE 928

Query:   430 AISXXXXXXXXXXXXPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKESFGP 488
             A                ++H     S   +  +    G+  +A   L    E  K   GP
Sbjct:   929 AEELLTHILEAWKRVMGSEHPSTLTSMHNLASIFWCQGRWKEAEELLTEVIETRKRVLGP 988

Query:   489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS 548
             +H       +NL + YL++   + A  + A   +     LGP H  ++    NL+ AY +
Sbjct:   989 EHPDTLSSLHNLASRYLDIGHWKEAEGLLAQVMETRKQVLGPAHPSTLTCMHNLASAYQN 1048

Query:   549 MGSYTLAIEFQQRAIDAWE 567
              G    A E Q R ++AW+
Sbjct:  1049 QGRLEEAEELQVRVMEAWK 1067

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007508001 SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (647 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	630
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	9e-08
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.003
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL 263
           P + A    LA V   +G  +EALE L+K LE+    L ED  E   A  +LA  ++A+ 
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALG 60

Query: 264 NFKEALPFGLKALEIHKK 281
           ++ EAL +  KAL + + 
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM 549
           H  +    NNL      L     A ++   A ++    LG  H ++  A  NL++ Y ++
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLAL 59

Query: 550 GSYTLAIEFQQRAIDAWES 568
           G Y  A+E+ ++A+   E+
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/78 (20%), Positives = 35/78 (44%)

Query: 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG 466
             ++A A + +++    + +++ A+ LL++ L L  +L +           +  L L  G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 467 KVPQAIPYLESAAERLKE 484
              +A+ YLE A    + 
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.8 bits (104), Expect = 6e-05
 Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 14/234 (5%)

Query: 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270
           LEL       G        L K   ++E +   +         +LAEA + +    EAL 
Sbjct: 50  LELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG 109

Query: 271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSEL 330
              +ALE+ +K L  +      +  L       L ++++ALE  E   K L+     +EL
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYE---KALELDPELNEL 166

Query: 331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKR 390
             A +    +  ALG++EEA+  L+  ++    +    A   +++G       K+ +A  
Sbjct: 167 AEALLALGALLEALGRYEEALELLEKALKLNPDDD---AEALLNLGLLYLKLGKYEEALE 223

Query: 391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444
             E A             + A+A   +++    +  +E A+  L++ L L   L
Sbjct: 224 YYEKA--------LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDL 269

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 16/113 (14%)

Query: 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270
           L L N+   +G  +EALE+ +K LE+          +   A  +LA A+  +  ++EAL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDP--------DNADAYYNLAAAYYKLGKYEEALE 55

Query: 271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323
              KALE+       ++ +       LG+ Y  L ++++ALE  E + ++   
Sbjct: 56  DYEKALELDP-----DNAKA---YYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397
            N+   LG ++EA+        +  +     A  + ++  A     K+ +A    E    
Sbjct: 7   GNLYYKLGDYDEALEYY----EKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE---- 58

Query: 398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443
               K      + A AY  + + Y  + ++E A+   ++ L L   
Sbjct: 59  ----KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA 430
             +++G        + +A    E A   L+        + ADAY  ++  Y  + ++E A
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKA---LELDP-----DNADAYYNLAAAYYKLGKYEEA 53

Query: 431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESA 478
           +   ++ L L     +A          +G      GK  +A+   E A
Sbjct: 54  LEDYEKALELDPDNAKA-------YYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 461 LLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
           +L   G   +A+  LE A E L    G  H       NNL   YL L     A +  
Sbjct: 14  VLRRLGDYDEALELLEKALE-LARELGEDHPETARALNNLARLYLALGDYDEALEYL 69

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 201 DIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV 260
           ++ P     +  LA     +G+ EEALE  +K LE+          +   A  +L  A+ 
Sbjct: 28  ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--------DNAKAYYNLGLAYY 79

Query: 261 AVLNFKEALPFGLKALEIHKK 281
            +  ++EAL    KALE+   
Sbjct: 80  KLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQA 471
           +A   +   Y  + +++ A+   ++ L L      A          +       GK  +A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAY-------YNLAAAYYKLGKYEEA 53

Query: 472 IPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523
           +   E A E   ++           Y NLG AY +L + + A + +  A ++
Sbjct: 54  LEDYEKALELDPDNA--------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 297 LGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356
           LG +Y  L ++ +ALE     +K L+   L  +   A  + A     LGK+EEA+   + 
Sbjct: 6   LGNLYYKLGDYDEALE---YYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395
            +          A  + ++G A     K+ +A    E A
Sbjct: 60  ALELDPDN----AKAYYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLEL 213
             +A  L  +         + ++L  L KA  +   L E+          P        L
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGED---------HPETARALNNL 52

Query: 214 ANVKTAMGRREEALEHLQKCLEIKE 238
           A +  A+G  +EALE+L+K L ++E
Sbjct: 53  ARLYLALGDYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.4 bits (90), Expect = 0.004
 Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 28/242 (11%)

Query: 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD 387
           S+L    +  A   + LG+ EEA+  L         E      +  ++ +AL N     +
Sbjct: 56  SDLAGLLLLLALALLKLGRLEEALELL---------EKALELELLPNLAEALLNLGLLLE 106

Query: 388 AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447
           A    E A  +L+K   + P+               + ++E A+ L ++ L L  +L   
Sbjct: 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPEL--- 163

Query: 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL 507
                     +   LL  G + +A+   E A E L+++             NLG  YL+L
Sbjct: 164 --------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215

Query: 508 DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567
            + + A + +  A ++          D+ EA  NL+     +G Y  A+E  ++A++   
Sbjct: 216 GKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Query: 568 SH 569
             
Sbjct: 268 DL 269

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.4 bits (90), Expect = 0.004
 Identities = 61/297 (20%), Positives = 102/297 (34%), Gaps = 32/297 (10%)

Query: 227 LEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286
           L+ L   L I    L +   E              +    EAL    +ALE+        
Sbjct: 1   LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60

Query: 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK 346
            + +     L         E  +   + EL             L  A ++   +  ALGK
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLP----------NLAEALLNLGLLLEALGK 110

Query: 347 FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406
           +EEA+  L+  +          AL+ +    AL     + +A    E A  +  +     
Sbjct: 111 YEEALELLEKALALDPDPDLAEALLALG---ALYELGDYEEALELYEKALELDPEL---- 163

Query: 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG 466
             E+A+A   +    E++  +E A+ LL++ L L          +      +G L L  G
Sbjct: 164 -NELAEALLALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLG 216

Query: 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523
           K  +A+ Y E A E   ++             NL    LEL R + A +    A ++
Sbjct: 217 KYEEALEYYEKALELDPDNA--------EALYNLALLLLELGRYEEALEALEKALEL 265

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 16/107 (14%)

Query: 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
           +G L    G   +A+ Y E A E   ++           Y NL AAY +L + + A + +
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDN--------ADAYYNLAAAYYKLGKYEEALEDY 57

Query: 518 AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
              +  +++       D+ +A  NL  AY  +G Y  A+E  ++A++
Sbjct: 58  ---EKALELDP-----DNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	630
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.95
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.93
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.92
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.91
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PLN03218	1060	maturation of RBCL 1; Provisional	99.9
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.9
PLN03218	1060	maturation of RBCL 1; Provisional	99.9
KOG2003	840	consensus TPR repeat-containing protein [General f	99.89
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.89
KOG1126	638	consensus DNA-binding cell division cycle control	99.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.88
KOG1126	638	consensus DNA-binding cell division cycle control	99.88
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.87
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.87
KOG2076	895	consensus RNA polymerase III transcription factor	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.84
KOG2076	895	consensus RNA polymerase III transcription factor	99.84
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
PLN03077	857	Protein ECB2; Provisional	99.84
PLN03077	857	Protein ECB2; Provisional	99.83
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.81
PRK04841	903	transcriptional regulator MalT; Provisional	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.81
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.8
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.79
KOG1129	478	consensus TPR repeat-containing protein [General f	99.79
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.79
KOG1129	478	consensus TPR repeat-containing protein [General f	99.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.77
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.75
PRK04841	903	transcriptional regulator MalT; Provisional	99.75
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.75
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.73
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.73
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.72
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.72
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.72
PRK12370	553	invasion protein regulator; Provisional	99.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.72
PRK12370	553	invasion protein regulator; Provisional	99.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.71
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.7
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.7
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.69
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.69
PRK11189	296	lipoprotein NlpI; Provisional	99.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.68
PRK11189	296	lipoprotein NlpI; Provisional	99.68
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.68
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.67
KOG1125	579	consensus TPR repeat-containing protein [General f	99.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.66
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.65
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.65
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.64
KOG1125	579	consensus TPR repeat-containing protein [General f	99.64
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.62
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.61
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.58
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.57
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.5
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.48
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.46
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.41
PLN02789	320	farnesyltranstransferase	99.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.4
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.36
PLN02789	320	farnesyltranstransferase	99.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.34
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.31
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.31
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.3
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.28
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.23
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.23
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.22
PRK15359	144	type III secretion system chaperone protein SscB;	99.22
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.21
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.19
PRK15359	144	type III secretion system chaperone protein SscB;	99.19
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.19
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.17
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.16
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.15
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.14
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.14
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.11
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.09
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.08
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.07
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.07
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.04
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.04
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.04
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.02
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.01
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.01
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.99
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.98
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.97
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.97
KOG1585	308	consensus Protein required for fusion of vesicles	98.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.96
KOG1585	308	consensus Protein required for fusion of vesicles	98.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.92
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.9
PF12688	120	TPR_5: Tetratrico peptide repeat	98.9
KOG0553	304	consensus TPR repeat-containing protein [General f	98.9
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.89
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.88
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.87
KOG0553	304	consensus TPR repeat-containing protein [General f	98.87
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.86
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.86
KOG1586	288	consensus Protein required for fusion of vesicles	98.81
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.8
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.76
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.75
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.72
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.72
PF12688	120	TPR_5: Tetratrico peptide repeat	98.71
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.7
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.7
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.7
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.67
KOG1586	288	consensus Protein required for fusion of vesicles	98.66
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.64
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.64
KOG2471	696	consensus TPR repeat-containing protein [General f	98.62
PRK10803	263	tol-pal system protein YbgF; Provisional	98.61
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.61
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.58
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.57
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.56
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.56
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.53
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.52
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.49
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.47
PRK10803	263	tol-pal system protein YbgF; Provisional	98.46
PRK15331	165	chaperone protein SicA; Provisional	98.45
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.45
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.42
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.42
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.39
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.38
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.38
KOG2471	696	consensus TPR repeat-containing protein [General f	98.37
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.32
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.32
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.32
KOG4555	175	consensus TPR repeat-containing protein [Function	98.3
KOG4555	175	consensus TPR repeat-containing protein [Function	98.3
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.28
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.27
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.27
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.27
KOG4234	271	consensus TPR repeat-containing protein [General f	98.25
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.22
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.19
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.19
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.18
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.16
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.15
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.14
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.12
PRK15331	165	chaperone protein SicA; Provisional	98.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.08
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.08
KOG4234	271	consensus TPR repeat-containing protein [General f	98.08
PF13512	142	TPR_18: Tetratricopeptide repeat	98.08
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.05
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.04
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.03
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.02
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.02
PF13512	142	TPR_18: Tetratricopeptide repeat	98.0
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.0
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.99
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.99
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.96
PRK11906	458	transcriptional regulator; Provisional	97.93
PF13371	73	TPR_9: Tetratricopeptide repeat	97.89
PRK11906	458	transcriptional regulator; Provisional	97.89
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.88
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.86
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.82
PF13371	73	TPR_9: Tetratricopeptide repeat	97.81
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.8
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.77
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.74
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.69
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.68
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.68
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.66
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.62
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.6
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.58
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.55
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.53
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.52
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.49
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.49
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.42
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.39
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.38
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.37
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.32
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.32
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.31
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.31
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.3
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.28
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.27
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.25
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.25
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.23
PF13428	44	TPR_14: Tetratricopeptide repeat	97.21
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.15
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.14
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.1
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.08
PF13431	34	TPR_17: Tetratricopeptide repeat	97.05
PF13428	44	TPR_14: Tetratricopeptide repeat	97.04
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.03
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.94
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.92
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.9
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.9
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.85
PF13431	34	TPR_17: Tetratricopeptide repeat	96.79
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.76
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.73
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.71
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.71
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.66
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.66
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.63
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.6
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.43
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.2
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.17
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	96.05
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.95
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.88
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.85
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.69
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.59
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.59
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.57
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.52
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	95.5
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.46
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.42
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.16
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	95.05
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.88
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.83
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.82
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.67
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.66
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.66
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.66
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.52
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.51
PRK14707	2710	hypothetical protein; Provisional	94.44
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.4
PRK14707	2710	hypothetical protein; Provisional	94.37
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.25
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.22
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.17
KOG1258	577	consensus mRNA processing protein [RNA processing	94.17
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.17
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.04
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.01
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.88
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.7
KOG3783	546	consensus Uncharacterized conserved protein [Funct	93.39
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.2
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.94
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.82
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.53
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.38
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.29
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.21
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.16
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.96
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.89
COG5187	412	RPN7 26S proteasome regulatory complex component,	91.56
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	91.42
KOG0687	393	consensus 26S proteasome regulatory complex, subun	91.4
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.36
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.3
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.19
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.0
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	90.97
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.9
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.8
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.77
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	90.69
PF13041	50	PPR_2: PPR repeat family	90.68
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	90.59
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.57
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.57
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.55
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.3
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	90.29
PF12854	34	PPR_1: PPR repeat	90.29
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.11
KOG4014	248	consensus Uncharacterized conserved protein (conta	90.0
KOG0508	615	consensus Ankyrin repeat protein [General function	89.83
PF13041	50	PPR_2: PPR repeat family	88.99
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	88.92
PF12854	34	PPR_1: PPR repeat	88.2
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.08
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	87.91
KOG0508	615	consensus Ankyrin repeat protein [General function	87.71
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	87.69
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	87.45
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.17
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.76
COG3947	361	Response regulator containing CheY-like receiver a	86.58
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	86.51
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	86.48
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	86.44
KOG1258	577	consensus mRNA processing protein [RNA processing	86.24
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.21
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.2
PRK10941	269	hypothetical protein; Provisional	86.18
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.78
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	85.53
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	84.86
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.77
COG5187	412	RPN7 26S proteasome regulatory complex component,	84.01
PRK10941	269	hypothetical protein; Provisional	83.99
KOG2422	665	consensus Uncharacterized conserved protein [Funct	83.82
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	83.62
COG3947	361	Response regulator containing CheY-like receiver a	83.1
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	83.01
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.86
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	82.81
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	82.22
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	80.51
KOG3364	149	consensus Membrane protein involved in organellar	80.47
KOG2422	665	consensus Uncharacterized conserved protein [Funct	80.37
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.34

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-42  Score=318.59  Aligned_cols=383  Identities=18%  Similarity=0.174  Sum_probs=347.6

Q ss_pred             ccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHH
Q 006812          105 SFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKAN  184 (630)
Q Consensus       105 ~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (630)
                      ...+|..+.+|.++|.++...| ++++|+.+|+.++++.          |..+++|.++|.++...|+.+.|...|..++
T Consensus       109 ~r~~~q~ae~ysn~aN~~kerg-~~~~al~~y~~aiel~----------p~fida~inla~al~~~~~~~~a~~~~~~al  177 (966)
T KOG4626|consen  109 IRKNPQGAEAYSNLANILKERG-QLQDALALYRAAIELK----------PKFIDAYINLAAALVTQGDLELAVQCFFEAL  177 (966)
T ss_pred             hhccchHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhcC----------chhhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence            3356888999999999999999 9999999999999875          3457899999999999999999999999999


Q ss_pred             HHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC
Q 006812          185 RMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN  264 (630)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  264 (630)
                      ++                .|...-+...+|..+..+|+..+|..+|.+|++..        |..+.+|.+||.++..+|+
T Consensus       178 ql----------------nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--------p~fAiawsnLg~~f~~~Ge  233 (966)
T KOG4626|consen  178 QL----------------NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--------PCFAIAWSNLGCVFNAQGE  233 (966)
T ss_pred             hc----------------CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--------CceeeeehhcchHHhhcch
Confidence            98                45556667789999999999999999999999544        5668999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc
Q 006812          265 FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL  344 (630)
Q Consensus       265 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  344 (630)
                      ...|+.+|++|+.+.        |....+|.+||.+|...+.++.|+.+|.+|+.+      .|..+.++.++|.+|+.+
T Consensus       234 i~~aiq~y~eAvkld--------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeq  299 (966)
T KOG4626|consen  234 IWLAIQHYEEAVKLD--------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQ  299 (966)
T ss_pred             HHHHHHHHHHhhcCC--------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEEEEecc
Confidence            999999999999864        455788999999999999999999999999887      788999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc
Q 006812          345 GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM  424 (630)
Q Consensus       345 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  424 (630)
                      |..+-|+..|+++++..+.    ...+|.+||.++...|+..+|..+|.+++.+.        |..+.+.++||.+|..+
T Consensus       300 G~ldlAI~~Ykral~~~P~----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~  367 (966)
T KOG4626|consen  300 GLLDLAIDTYKRALELQPN----FPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQ  367 (966)
T ss_pred             ccHHHHHHHHHHHHhcCCC----chHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHh
Confidence            9999999999999996544    35599999999999999999999999999987        67789999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812          425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY  504 (630)
Q Consensus       425 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  504 (630)
                      |.+++|..+|.+++++....       +....+||.+|.++|++++|+.+|++++.|        .|..+.++.++|..|
T Consensus       368 ~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~  432 (966)
T KOG4626|consen  368 GKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTY  432 (966)
T ss_pred             ccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHH
Confidence            99999999999999974322       457899999999999999999999999984        588999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812          505 LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       505 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                      ..+|+.+.|+.+|.+|+.        -+|..+++..+||.+|...|+..+|+.-|+.|+++-+.+.+
T Consensus       433 ke~g~v~~A~q~y~rAI~--------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd  491 (966)
T KOG4626|consen  433 KEMGDVSAAIQCYTRAIQ--------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD  491 (966)
T ss_pred             HHhhhHHHHHHHHHHHHh--------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence            999999999999999999        56999999999999999999999999999999987655444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-40  Score=303.29  Aligned_cols=378  Identities=18%  Similarity=0.159  Sum_probs=337.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      .+|+...+|.++|.++..+| +.+.|..+|.+++++.+          ....+...+|.++-..|+..+|...|.+|+..
T Consensus       145 l~p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP----------~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~  213 (966)
T KOG4626|consen  145 LKPKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNP----------DLYCARSDLGNLLKAEGRLEEAKACYLKAIET  213 (966)
T ss_pred             cCchhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCc----------chhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence            35888999999999999999 99999999999998863          34556678999999999999999999999998


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK  266 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (630)
                                      .|..+.+|.+||.++..+|+...|+.+|++|+.        -+|....+|.+||.+|...+.|+
T Consensus       214 ----------------qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~~~d  269 (966)
T KOG4626|consen  214 ----------------QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEARIFD  269 (966)
T ss_pred             ----------------CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHhcch
Confidence                            456778899999999999999999999999994        44667899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC
Q 006812          267 EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK  346 (630)
Q Consensus       267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  346 (630)
                      +|+..|.+|+.+        .|..+.++.++|.+|+.+|..+-|+..|++++++      .|....++.++|..+-..|+
T Consensus       270 ~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~------~P~F~~Ay~NlanALkd~G~  335 (966)
T KOG4626|consen  270 RAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL------QPNFPDAYNNLANALKDKGS  335 (966)
T ss_pred             HHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc------CCCchHHHhHHHHHHHhccc
Confidence            999999999985        4456788999999999999999999999999997      78899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCC
Q 006812          347 FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNE  426 (630)
Q Consensus       347 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  426 (630)
                      ..+|..+|.+++...+..    +.+.++||.+|..+|.+++|..+|.+++++.        |..+.+.++||.+|..+|+
T Consensus       336 V~ea~~cYnkaL~l~p~h----adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgn  403 (966)
T KOG4626|consen  336 VTEAVDCYNKALRLCPNH----ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGN  403 (966)
T ss_pred             hHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhccc
Confidence            999999999999966544    5599999999999999999999999999987        7899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 006812          427 FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE  506 (630)
Q Consensus       427 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  506 (630)
                      +++|+.+|++++.|.       +.-+.++.++|..|..+|+.+.|+.+|.+|+.        -+|..+++..+||.+|..
T Consensus       404 l~~Ai~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--------~nPt~AeAhsNLasi~kD  468 (966)
T KOG4626|consen  404 LDDAIMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--------INPTFAEAHSNLASIYKD  468 (966)
T ss_pred             HHHHHHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--------cCcHHHHHHhhHHHHhhc
Confidence            999999999999972       22367899999999999999999999999998        468999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          507 LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       507 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      .|+..+|+..|+.++.+        .|+..+++.+++.++.-..++.+=-+.+.+..++.+.
T Consensus       469 sGni~~AI~sY~~aLkl--------kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrd  522 (966)
T KOG4626|consen  469 SGNIPEAIQSYRTALKL--------KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRD  522 (966)
T ss_pred             cCCcHHHHHHHHHHHcc--------CCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            99999999999999994        4666689999998887666665555555666555544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=5.7e-32  Score=280.08  Aligned_cols=413  Identities=17%  Similarity=0.136  Sum_probs=315.7

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812          111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL  190 (630)
Q Consensus       111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  190 (630)
                      .+..+...|..++..| +|++|+..|++++.+.+.           ...+.++|.+|..+|++++|+..+++++.+    
T Consensus       126 ~a~~~k~~G~~~~~~~-~~~~Ai~~y~~al~~~p~-----------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l----  189 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNK-DFNKAIKLYSKAIECKPD-----------PVYYSNRAACHNALGDWEKVVEDTTAALEL----  189 (615)
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----
Confidence            3567889999999999 999999999999976521           236889999999999999999999999988    


Q ss_pred             hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------H------------Hhccch--
Q 006812          191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE-----------L------------ILEEDS--  245 (630)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------~------------~~~~~~--  245 (630)
                                  .|....+++.+|.+|..+|++++|+..|..+..+..           .            .+....  
T Consensus       190 ------------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~  257 (615)
T TIGR00990       190 ------------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPEN  257 (615)
T ss_pred             ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                        344467888999999999999999988765532110           0            000000  


Q ss_pred             ------------------------------HHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 006812          246 ------------------------------RELGVANRDLAEAF---VAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH  292 (630)
Q Consensus       246 ------------------------------~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  292 (630)
                                                    +.....+..++..+   ...++|++|+..|+++++..     ...+..+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-----~~~~~~a~  332 (615)
T TIGR00990       258 LPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-----KLGEKEAI  332 (615)
T ss_pred             CCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-----CCChhhHH
Confidence                                          00001112222211   12357889999998888753     13567778


Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812          293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF  372 (630)
Q Consensus       293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  372 (630)
                      ++..+|.++..+|++++|+..+++++.+      .|....++..+|.++...|++++|+..++++++..+.+    ..++
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~  402 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED----PDIY  402 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHH
Confidence            8999999999999999999999999887      67788899999999999999999999999999875544    4589


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchh
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG  452 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  452 (630)
                      ..+|.++...|++++|+.+|++++.+.        |.....+..+|.++...|++++|+..+++++...     +.  ..
T Consensus       403 ~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----P~--~~  467 (615)
T TIGR00990       403 YHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-----PE--AP  467 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC--Ch
Confidence            999999999999999999999998875        4566788999999999999999999999999852     22  24


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      .++..+|.++...|++++|+..|++++.+.... ...+......+...+..+...|++++|+.++++++.+        +
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~  538 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--------D  538 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------C
Confidence            578899999999999999999999999854321 1111222223333334445579999999999999984        3


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHHHHH
Q 006812          533 ADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS-AQDELREARRLLEQLKIK  590 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~A~~~~~~~~~~  590 (630)
                      |+...++..+|.++...|++++|+.+|++++++.+..+.. ....+.+|.++..++.+.
T Consensus       539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~~~  597 (615)
T TIGR00990       539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQED  597 (615)
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555688999999999999999999999999987653321 222344455554444433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=7.8e-31  Score=250.78  Aligned_cols=397  Identities=27%  Similarity=0.323  Sum_probs=314.0

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      ...+.........++.+.+.+....++++..+..  ..   ......+......+...+.+++|....++...+      
T Consensus        89 ~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~--~~---~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~------  157 (508)
T KOG1840|consen   89 QKLLAQVRRLCQEGEWLEDELALTQRALKQSERS--VA---QLEEEKLHLLAAIQALLLQLDEAEQGQEQAAVT------  157 (508)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH--HH---hHHHHHHHHHHHHHHHHHHhhhhhccccccccc------
Confidence            3344444444444445666666666666555443  00   011112333444445555556655555443322      


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG  272 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (630)
                                 +.    .-.++......-+.+.....+...+.+..+..+..+|....+...++..|..+|+|++|+..+
T Consensus       158 -----------~~----~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~  222 (508)
T KOG1840|consen  158 -----------PV----KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLC  222 (508)
T ss_pred             -----------ch----hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence                       00    111333333333333556666666667777777888999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 006812          273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAIN  352 (630)
Q Consensus       273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  352 (630)
                      +.++++..+..|.+++.+...+..+|.+|..++++++|+..|++|+.+.+.                             
T Consensus       223 k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~-----------------------------  273 (508)
T KOG1840|consen  223 KQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE-----------------------------  273 (508)
T ss_pred             HHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-----------------------------
Confidence            999999888888888888888877888888888888888777777776432                             


Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 006812          353 TLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAIS  432 (630)
Q Consensus       353 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  432 (630)
                             .++.+++.++.++.+||.+|...|++++|..++++|++|..+..+..++.++..+.+++.++..++++++|..
T Consensus       274 -------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~  346 (508)
T KOG1840|consen  274 -------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK  346 (508)
T ss_pred             -------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence                   2234567777788888888888899999999999999999888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChh
Q 006812          433 LLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQ  511 (630)
Q Consensus       433 ~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  511 (630)
                      ++++++++....++..++. ..++.+||.+|..+|++++|.++|++|+.+.++..+..++.....+++||..|.+.+++.
T Consensus       347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence            9999999999998888854 678899999999999999999999999999999988889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       512 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                      +|...|.++..|. +..|+++|++...|.+|+.+|..+|++++|.++.+.++...+..+..
T Consensus       427 ~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~  486 (508)
T KOG1840|consen  427 EAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGT  486 (508)
T ss_pred             hHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999 99999999999999999999999999999999999999988884443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=4.4e-29  Score=238.78  Aligned_cols=338  Identities=19%  Similarity=0.177  Sum_probs=289.8

Q ss_pred             hhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Q 006812          163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE  242 (630)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  242 (630)
                      +.......-+.+...........+..+..+..        .|....+...++..|..+|+|+.|+..+++++++..+..+
T Consensus       163 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G  234 (508)
T KOG1840|consen  163 LADLGGEKQEEDSSIEGTLKGLDIQAKGLGDE--------DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG  234 (508)
T ss_pred             HHhhccccccccccchhhHHHHHHHHHhcccC--------CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC
Confidence            33333333333355555555555544444433        5666677778999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 006812          243 EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK  322 (630)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  322 (630)
                      .+++.++..+..+|.+|..+++|.+|+.+|++|+.+.+..+|.+|+.++.++.+||.+|...|++++|..++++|+++.+
T Consensus       235 ~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~  314 (508)
T KOG1840|consen  235 LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE  314 (508)
T ss_pred             ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888854


Q ss_pred             HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812          323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK  402 (630)
Q Consensus       323 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  402 (630)
                      ..                                    ....++.++..+.+++.++...+++++|..++++++++....
T Consensus       315 ~~------------------------------------~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  315 KL------------------------------------LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             Hh------------------------------------hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            41                                    112455566778888888888899999999999999998888


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812          403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAER  481 (630)
Q Consensus       403 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (630)
                      .+.+++.++..+.++|.+|..+|++++|.+++++++.+.+...+..+.. ...++++|..|.+.+++.+|...|.++..+
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999887766655 567799999999999999999999999999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006812          482 LKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA  545 (630)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  545 (630)
                      . +..|+++|++...+.+||.+|..+|++++|+++.++++..++..++..++.....-..++..
T Consensus       439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (508)
T KOG1840|consen  439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADL  501 (508)
T ss_pred             H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHH
Confidence            9 88999999999999999999999999999999999999999999988877766544444433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=6.1e-28  Score=267.28  Aligned_cols=398  Identities=16%  Similarity=0.144  Sum_probs=289.5

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      |.....+..+|.++...| ++++|+.+|+++++..+          ....++..+|.++...|++++|+..|++++..  
T Consensus       462 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--  528 (899)
T TIGR02917       462 PDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEP----------DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--  528 (899)
T ss_pred             CCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC----------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            445567888899998888 99999999999886542          23446677889999999999999999888876  


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHH
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA  268 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  268 (630)
                                    .|....++..++.++...|++++|+.++++++...        |.....+..++.+|...|++++|
T Consensus       529 --------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A  586 (899)
T TIGR02917       529 --------------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKA  586 (899)
T ss_pred             --------------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHH
Confidence                          12223566778888888888888888888877432        22345677788888888888888


Q ss_pred             HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 006812          269 LPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE  348 (630)
Q Consensus       269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  348 (630)
                      +.++++++...+        .....+..+|.++...|++++|+..|+++++.      .|....++..++.++...|+++
T Consensus       587 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~  652 (899)
T TIGR02917       587 LAILNEAADAAP--------DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAVMKNYA  652 (899)
T ss_pred             HHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHH
Confidence            888888775322        22356778888888888888888888887765      4555667778888888888888


Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812          349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE  428 (630)
Q Consensus       349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  428 (630)
                      +|+..+++++...+.+    ..++..++.++...|++++|...++......        +.....+..+|.++...|+++
T Consensus       653 ~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~  720 (899)
T TIGR02917       653 KAITSLKRALELKPDN----TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--------PKAALGFELEGDLYLRQKDYP  720 (899)
T ss_pred             HHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCChHHHHHHHHHHHHCCCHH
Confidence            8888888888754443    3467777888888888888888777665432        233456677788888888888


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812          429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD  508 (630)
Q Consensus       429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  508 (630)
                      +|+..|++++...     +   ....+..++.++...|++++|...++++++        .+|....++..+|.+|...|
T Consensus       721 ~A~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~g  784 (899)
T TIGR02917       721 AAIQAYRKALKRA-----P---SSQNAIKLHRALLASGNTAEAVKTLEAWLK--------THPNDAVLRTALAELYLAQK  784 (899)
T ss_pred             HHHHHHHHHHhhC-----C---CchHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCc
Confidence            8888888887741     1   114566778888888888888888887776        23455667778888888888


Q ss_pred             ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------CchhHHHH
Q 006812          509 RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP---------SAQDELRE  579 (630)
Q Consensus       509 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~  579 (630)
                      ++++|+.+|+++++.        +|+...++.+++.++...|+ .+|+.++++++++.+....         ...+++++
T Consensus       785 ~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  855 (899)
T TIGR02917       785 DYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR  855 (899)
T ss_pred             CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence            888888888888763        34445677778888888888 7788888887765322110         13456777


Q ss_pred             HHHHHHHHHHHhc
Q 006812          580 ARRLLEQLKIKAS  592 (630)
Q Consensus       580 A~~~~~~~~~~~~  592 (630)
                      |...++++.+...
T Consensus       856 A~~~~~~a~~~~~  868 (899)
T TIGR02917       856 ALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHHHHHhhCC
Confidence            7777777776543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=4.5e-28  Score=251.07  Aligned_cols=361  Identities=16%  Similarity=0.075  Sum_probs=279.4

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH----
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML----  187 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----  187 (630)
                      ...+.++|.+|...| ++++|+..+.+++++.          |....++..+|.+|..+|++++|+..|..+..+.    
T Consensus       160 ~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~----------p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       160 PVYYSNRAACHNALG-DWEKVVEDTTAALELD----------PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            457899999999999 9999999999999864          2346788999999999999999998886553220    


Q ss_pred             -------h------------HhhhcCCCCCCc--------------------------cchhhHHHHHHHHHHHH---HH
Q 006812          188 -------G------------RLEEEGLGGSVE--------------------------DIKPIMHAVHLELANVK---TA  219 (630)
Q Consensus       188 -------~------------~~~~~~~~~~~~--------------------------~~~~~~~~~~~~l~~~~---~~  219 (630)
                             .            .....  .+...                          +..+.....+..++..+   ..
T Consensus       229 ~~~~~~~~~~l~~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~  306 (615)
T TIGR00990       229 EQSAQAVERLLKKFAESKAKEILET--KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKA  306 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhh
Confidence                   0            00000  00000                          00011111122233222   22


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 006812          220 MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGV  299 (630)
Q Consensus       220 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  299 (630)
                      .++|++|+..|+++++..     ...|..+.++..+|.++...|++++|+..+++++++.+        .....+..+|.
T Consensus       307 ~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--------~~~~~~~~la~  373 (615)
T TIGR00990       307 DESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--------RVTQSYIKRAS  373 (615)
T ss_pred             hhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHH
Confidence            467888888888887543     23466788999999999999999999999999998643        34567889999


Q ss_pred             HHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Q 006812          300 IYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKAL  379 (630)
Q Consensus       300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~  379 (630)
                      ++...|++++|+.++++++++      +|....++..+|.++...|++++|+..|++++...+.+    ...+..+|.++
T Consensus       374 ~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----~~~~~~la~~~  443 (615)
T TIGR00990       374 MNLELGDPDKAEEDFDKALKL------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----IFSHIQLGVTQ  443 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC----HHHHHHHHHHH
Confidence            999999999999999999886      56778899999999999999999999999999975543    45788999999


Q ss_pred             HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 006812          380 CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIG  459 (630)
Q Consensus       380 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  459 (630)
                      ...|++++|+..+++++...        |....++..+|.++...|++++|+..|++++.+.+.... .......+...+
T Consensus       444 ~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a  514 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKA  514 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHH
Confidence            99999999999999998765        455678899999999999999999999999997544321 111222223333


Q ss_pred             -HHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          460 -WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       460 -~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                       .++...|++++|+.++++++.+        +|....++..+|.++..+|++++|+.+|++++++..
T Consensus       515 ~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       515 LALFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence             3444579999999999999983        355566888999999999999999999999998753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=2.6e-27  Score=261.21  Aligned_cols=426  Identities=13%  Similarity=0.048  Sum_probs=310.0

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-----------Hh----------------hhCCCCChhHH--H
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLD-----------KD----------------ERNNRPSLLVA--M  158 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~-----------~~----------------~~~~~~~~~~~--~  158 (630)
                      +|....+++.+|.+++..| ++++|+..+++++....           ..                ...........  .
T Consensus       177 ~P~~~~~~~~LA~ll~~~g-~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~  255 (1157)
T PRK11447        177 YPGNTGLRNTLALLLFSSG-RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR  255 (1157)
T ss_pred             CCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence            4667788899999999998 99999999998754210           00                00000000000  0


Q ss_pred             ---------------HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCH
Q 006812          159 ---------------CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRR  223 (630)
Q Consensus       159 ---------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  223 (630)
                                     ....+|.++...|++++|+..|++++..                .|....++..+|.++...|++
T Consensus       256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~----------------~P~~~~a~~~Lg~~~~~~g~~  319 (1157)
T PRK11447        256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA----------------NPKDSEALGALGQAYSQQGDR  319 (1157)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCH
Confidence                           0123488899999999999999999997                233356788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccchH------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812          224 EEALEHLQKCLEIKELILEEDSR------ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL  297 (630)
Q Consensus       224 ~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  297 (630)
                      ++|+.+|+++++..+........      ........+|.++...|++++|+..|++++.+.+        ....++..+
T Consensus       320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P--------~~~~a~~~L  391 (1157)
T PRK11447        320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN--------TDSYAVLGL  391 (1157)
T ss_pred             HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHH
Confidence            99999999999765321100000      0112334568899999999999999999998644        224567889


Q ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHcC------------CChh------------------------HHHHHHHHHHHH
Q 006812          298 GVIYSGLEEHQKALEQNELSQKVLKTWG------------LSSE------------------------LLRAEIDAANMQ  341 (630)
Q Consensus       298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~------------~~~~------------------------~~~~~~~la~~~  341 (630)
                      |.++...|++++|+.+|++++++.....            ..+.                        ....+..+|.++
T Consensus       392 g~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~  471 (1157)
T PRK11447        392 GDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL  471 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            9999999999999999999887521100            0000                        011233467778


Q ss_pred             HHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812          342 IALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY  421 (630)
Q Consensus       342 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  421 (630)
                      ...|++++|+..|+++++..+.+    ..++..+|.+|...|++++|+..+++++...        |.....++.++..+
T Consensus       472 ~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--------P~~~~~~~a~al~l  539 (1157)
T PRK11447        472 ENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQK--------PNDPEQVYAYGLYL  539 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence            88999999999999999876654    3478899999999999999999999987643        23334455556666


Q ss_pred             HHcCCHHHHHHHHHHH-------------------------------------HHHHHhCCCCCCchhHHHHHHHHHHHH
Q 006812          422 ESMNEFETAISLLKRT-------------------------------------LALLEKLPQAQHSEGSVSARIGWLLLL  464 (630)
Q Consensus       422 ~~~g~~~~A~~~~~~a-------------------------------------l~~~~~~~~~~~~~~~~~~~la~~~~~  464 (630)
                      ...+++++|+..++++                                     +.+.+.    .+.....+..+|.++..
T Consensus       540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~p~~~~~~~~La~~~~~  615 (1157)
T PRK11447        540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----QPPSTRIDLTLADWAQQ  615 (1157)
T ss_pred             HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----CCCCchHHHHHHHHHHH
Confidence            6666666666655432                                     111111    11223467889999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812          465 TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK  544 (630)
Q Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  544 (630)
                      .|++++|+..|+++++.        .|....++..++.+|...|++++|+..+++++.        ..|+...++..+|.
T Consensus       616 ~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--------~~p~~~~~~~~la~  679 (1157)
T PRK11447        616 RGDYAAARAAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--------TANDSLNTQRRVAL  679 (1157)
T ss_pred             cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--------cCCCChHHHHHHHH
Confidence            99999999999999983        466677899999999999999999999998876        33455567888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHcCC---------------CchhHHHHHHHHHHHHHHH
Q 006812          545 AYSSMGSYTLAIEFQQRAIDAWESHGP---------------SAQDELREARRLLEQLKIK  590 (630)
Q Consensus       545 ~~~~~g~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~A~~~~~~~~~~  590 (630)
                      ++...|++++|.++|++++...+...+               ...++.++|+..|++....
T Consensus       680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~  740 (1157)
T PRK11447        680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA  740 (1157)
T ss_pred             HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999876543222               1346788999999988653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=1.4e-27  Score=264.44  Aligned_cols=395  Identities=18%  Similarity=0.164  Sum_probs=322.2

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      +|....+++.+|.++...| ++++|+..|++++...+          ....++..++.++...|++++|+..+++++.. 
T Consensus       495 ~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  562 (899)
T TIGR02917       495 EPDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTIDP----------KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-  562 (899)
T ss_pred             CCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCc----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            3556678889999999999 99999999999887542          23557788999999999999999999999876 


Q ss_pred             hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812          188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE  267 (630)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (630)
                                     .+.....+..++.++...|++++|+..++++++..        |....++..+|.++...|++++
T Consensus       563 ---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~  619 (899)
T TIGR02917       563 ---------------NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNK  619 (899)
T ss_pred             ---------------CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHH
Confidence                           11223456789999999999999999999987432        3335678999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH
Q 006812          268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF  347 (630)
Q Consensus       268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  347 (630)
                      |+..|+++++..+        .....+..+|.++...|++++|+.++++++..      .|....++..++.++...|++
T Consensus       620 A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~  685 (899)
T TIGR02917       620 AVSSFKKLLALQP--------DSALALLLLADAYAVMKNYAKAITSLKRALEL------KPDNTEAQIGLAQLLLAAKRT  685 (899)
T ss_pred             HHHHHHHHHHhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCH
Confidence            9999999987533        22356778999999999999999999988875      566778889999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH
Q 006812          348 EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEF  427 (630)
Q Consensus       348 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  427 (630)
                      ++|+.+++.+....+..    ...+..+|.++...|++++|+..+++++....        .. ..+..++.++...|++
T Consensus       686 ~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--------~~-~~~~~l~~~~~~~g~~  752 (899)
T TIGR02917       686 ESAKKIAKSLQKQHPKA----ALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--------SS-QNAIKLHRALLASGNT  752 (899)
T ss_pred             HHHHHHHHHHHhhCcCC----hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--------Cc-hHHHHHHHHHHHCCCH
Confidence            99999999888754433    44778899999999999999999999887641        11 5667899999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 006812          428 ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL  507 (630)
Q Consensus       428 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  507 (630)
                      ++|...+++++..     .  +....++..+|.++...|++++|+.+|+++++.        +|....++..+|.++...
T Consensus       753 ~~A~~~~~~~l~~-----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       753 AEAVKTLEAWLKT-----H--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHHHHHh-----C--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhc
Confidence            9999999998874     1  223567899999999999999999999999973        456677889999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------CchhHHH
Q 006812          508 DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP---------SAQDELR  578 (630)
Q Consensus       508 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~  578 (630)
                      |+ .+|+.++++++.+.        |+...++..+|.++...|++++|..+|+++++.......         ...|+.+
T Consensus       818 ~~-~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~  888 (899)
T TIGR02917       818 KD-PRALEYAEKALKLA--------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA  888 (899)
T ss_pred             Cc-HHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence            99 88999999998842        333457788999999999999999999999976443110         1446777


Q ss_pred             HHHHHHHHHH
Q 006812          579 EARRLLEQLK  588 (630)
Q Consensus       579 ~A~~~~~~~~  588 (630)
                      +|+.+++++.
T Consensus       889 ~A~~~~~~~~  898 (899)
T TIGR02917       889 EARKELDKLL  898 (899)
T ss_pred             HHHHHHHHHh
Confidence            8888887764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=1.3e-26  Score=255.75  Aligned_cols=388  Identities=12%  Similarity=0.054  Sum_probs=295.9

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCC
Q 006812          117 KIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG  196 (630)
Q Consensus       117 ~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  196 (630)
                      ..|..+...| ++++|+..|+++++..+          ..+.++..+|.++...|++++|+.+|+++++..         
T Consensus       274 ~~G~~~~~~g-~~~~A~~~l~~aL~~~P----------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~---------  333 (1157)
T PRK11447        274 AQGLAAVDSG-QGGKAIPELQQAVRANP----------KDSEALGALGQAYSQQGDRARAVAQFEKALALD---------  333 (1157)
T ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------
Confidence            4588888888 99999999999998752          235678899999999999999999999999872         


Q ss_pred             CCCccchh-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHH
Q 006812          197 GSVEDIKP-------IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEAL  269 (630)
Q Consensus       197 ~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  269 (630)
                      |.......       ........+|.++...|++++|+..|++++++.        |....++..+|.++...|++++|+
T Consensus       334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~  405 (1157)
T PRK11447        334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAE  405 (1157)
T ss_pred             CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            22221110       011233456889999999999999999999653        333567889999999999999999


Q ss_pred             HHHHHHHHHHhhhcC----------CCCHH------------------------HHHHHHHHHHHHhccccHHHHHHHHH
Q 006812          270 PFGLKALEIHKKGLG----------HNSVE------------------------VAHDRRLLGVIYSGLEEHQKALEQNE  315 (630)
Q Consensus       270 ~~~~~al~~~~~~~~----------~~~~~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~  315 (630)
                      .+|++++++.+....          ...++                        ....+..+|.++...|++++|+..|+
T Consensus       406 ~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~  485 (1157)
T PRK11447        406 RYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR  485 (1157)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999976442100          00000                        01223456777888999999999999


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812          316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA  395 (630)
Q Consensus       316 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  395 (630)
                      +++++      .|+...++..+|.+|...|++++|+..+++++...+.+.    ..++.++..+...+++++|+..++++
T Consensus       486 ~Al~~------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~----~~~~a~al~l~~~~~~~~Al~~l~~l  555 (1157)
T PRK11447        486 QRLAL------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP----EQVYAYGLYLSGSDRDRAALAHLNTL  555 (1157)
T ss_pred             HHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            99887      677788899999999999999999999999998655443    24555555666666666666655432


Q ss_pred             H-------------------------------------HHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          396 C-------------------------------------GILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTL  438 (630)
Q Consensus       396 ~-------------------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  438 (630)
                      .                                     .++..     .|.....+..+|.++...|++++|+..|++++
T Consensus       556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al  630 (1157)
T PRK11447        556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL  630 (1157)
T ss_pred             CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1                                     11111     12334567889999999999999999999999


Q ss_pred             HHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812          439 ALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA  518 (630)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  518 (630)
                      +.     .+.  ...++..++.+|...|++++|+..++++++        ..|....++..+|.++...|++++|+.+|+
T Consensus       631 ~~-----~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  695 (1157)
T PRK11447        631 TR-----EPG--NADARLGLIEVDIAQGDLAAARAQLAKLPA--------TANDSLNTQRRVALAWAALGDTAAAQRTFN  695 (1157)
T ss_pred             Hh-----CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--------cCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            86     222  346889999999999999999999998876        345556678889999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       519 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      +++......  +.....+.++..+|.++...|++++|+..|++|+.
T Consensus       696 ~al~~~~~~--~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        696 RLIPQAKSQ--PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHhhhCccC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            998754221  11112456777889999999999999999999985

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.4e-26  Score=225.16  Aligned_cols=396  Identities=17%  Similarity=0.125  Sum_probs=266.4

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      +..+..++.+|..|+.+| +|++|..+|.++++..+..         ....++.+|..|...|+++.|..+|++.+..  
T Consensus       304 ~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~~~d~---------~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--  371 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKADNDN---------FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--  371 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHccCCCC---------ccccccchhHHHHHhchHHHHHHHHHHHHHh--
Confidence            344555666666666666 6666666666665543111         2334455666666666666666666666555  


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMG----RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN  264 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  264 (630)
                                    .|....+...||.+|...+    ..+.|..+..++++.        .|....+|..++.++....-
T Consensus       372 --------------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~  429 (1018)
T KOG2002|consen  372 --------------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDP  429 (1018)
T ss_pred             --------------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcCh
Confidence                          1222333444555555554    334444444444422        24446677777777765544


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc-CCC---hhHHHHHHHHHHH
Q 006812          265 FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW-GLS---SELLRAEIDAANM  340 (630)
Q Consensus       265 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~---~~~~~~~~~la~~  340 (630)
                      + .++..|.+|+.+.......   .-...++++|..++..|++.+|..+|..|...+... ..+   ...+...+++|.+
T Consensus       430 ~-~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl  505 (1018)
T KOG2002|consen  430 W-ASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL  505 (1018)
T ss_pred             H-HHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence            4 4488888888777654333   223567788888888888888888888888774422 111   1234567788888


Q ss_pred             HHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812          341 QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ  420 (630)
Q Consensus       341 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  420 (630)
                      +...++++.|.+.|..++.    .+|....++..+|.+....++..+|...+..++.+..        ....++..+|.+
T Consensus       506 ~E~l~~~~~A~e~Yk~Ilk----ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--------~np~arsl~G~~  573 (1018)
T KOG2002|consen  506 LEELHDTEVAEEMYKSILK----EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--------SNPNARSLLGNL  573 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHH----HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--------CCcHHHHHHHHH
Confidence            8888888888888888887    4455566788888777777888888888888877653        233677778888


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc-----CChhhHHHHHHHHHHHHHHhcCCCCccHHH
Q 006812          421 YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT-----GKVPQAIPYLESAAERLKESFGPKHFGVGY  495 (630)
Q Consensus       421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  495 (630)
                      |....++..|.+-|+..+.-..     ..+++.+...||.+++..     .+.+.+...+.+|++++.+.+. .+|....
T Consensus       574 ~l~k~~~~~a~k~f~~i~~~~~-----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-~dpkN~y  647 (1018)
T KOG2002|consen  574 HLKKSEWKPAKKKFETILKKTS-----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-NDPKNMY  647 (1018)
T ss_pred             HHhhhhhcccccHHHHHHhhhc-----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh-cCcchhh
Confidence            8888888888887776655311     123455667888877652     2335566666666666655543 5688888


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      +-+.+|.++...|++.+|...|.++.+-..        +...+|.|+|.||..+|+|-.|++.|+.+++.+..
T Consensus       648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~--------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~  712 (1018)
T KOG2002|consen  648 AANGIGIVLAEKGRFSEARDIFSQVREATS--------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK  712 (1018)
T ss_pred             hccchhhhhhhccCchHHHHHHHHHHHHHh--------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            899999999999999999999999887432        33468999999999999999999999999977663

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=2.5e-25  Score=229.32  Aligned_cols=358  Identities=13%  Similarity=0.037  Sum_probs=288.2

Q ss_pred             HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      ...+..+...|++++|+..++..+..                .|.-..+++.+|.+....|++++|+..|+++++..   
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l~~----------------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---  106 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRVLT----------------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---  106 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHHHh----------------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---
Confidence            44667788999999999999999887                22334567788999999999999999999998544   


Q ss_pred             hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                           |....++..+|.++...|++++|+..+++++.+.+        ....++..++.++...|++++|+..+.++...
T Consensus       107 -----P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P--------~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174        107 -----VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS--------GNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence                 33467789999999999999999999999998643        23456778899999999999999999866554


Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812          321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD  400 (630)
Q Consensus       321 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  400 (630)
                            .|.....+..++ .+...|++++|+..+++++...+....   .....++.++...|++++|+..+++++... 
T Consensus       174 ------~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-  242 (656)
T PRK15174        174 ------VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ---ESAGLAVDTLCAVGKYQEAIQTGESALARG-  242 (656)
T ss_pred             ------CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence                  333334444443 478899999999999998876432222   234566888999999999999999998763 


Q ss_pred             hhcCCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHH
Q 006812          401 KKETISPEEVADAYSEISMQYESMNEFET----AISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE  476 (630)
Q Consensus       401 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  476 (630)
                             |....++..+|.++...|++++    |+..|++++.+     .+.  ...++..+|.++...|++++|+..++
T Consensus       243 -------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~--~~~a~~~lg~~l~~~g~~~eA~~~l~  308 (656)
T PRK15174        243 -------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSD--NVRIVTLYADALIRTGQNEKAIPLLQ  308 (656)
T ss_pred             -------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCC--CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                   4556788999999999999986    89999999886     222  34688999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 006812          477 SAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI  556 (630)
Q Consensus       477 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  556 (630)
                      +++.+        +|....++..+|.++...|++++|+..|++++.        .+|+....+..+|.++...|++++|+
T Consensus       309 ~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--------~~P~~~~~~~~~a~al~~~G~~deA~  372 (656)
T PRK15174        309 QSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--------EKGVTSKWNRYAAAALLQAGKTSEAE  372 (656)
T ss_pred             HHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHCCCHHHHH
Confidence            99983        456667888999999999999999999999988        34555556677899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhcCC
Q 006812          557 EFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGA  594 (630)
Q Consensus       557 ~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  594 (630)
                      ..|++++++.....   ...+.+|+..|.+.......+
T Consensus       373 ~~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~  407 (656)
T PRK15174        373 SVFEHYIQARASHL---PQSFEEGLLALDGQISAVNLP  407 (656)
T ss_pred             HHHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCc
Confidence            99999998866644   355668888888887766444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.2e-25  Score=218.47  Aligned_cols=394  Identities=18%  Similarity=0.154  Sum_probs=313.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      ..|....+++..+.+.+..+ +|..|+.+|++++.+.+..  .       +.....+|.|+..+|+.+.|+..|++++++
T Consensus       159 ~sp~Nil~LlGkA~i~ynkk-dY~~al~yyk~al~inp~~--~-------aD~rIgig~Cf~kl~~~~~a~~a~~ralqL  228 (1018)
T KOG2002|consen  159 QSPDNILALLGKARIAYNKK-DYRGALKYYKKALRINPAC--K-------ADVRIGIGHCFWKLGMSEKALLAFERALQL  228 (1018)
T ss_pred             hCCcchHHHHHHHHHHhccc-cHHHHHHHHHHHHhcCccc--C-------CCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence            34666677777777888888 9999999999999888665  1       222345788999999999999999999998


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR---REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL  263 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (630)
                                      .|..+.++..||.+-....+   +..+...+.++..+.        +..+.+++.|+..|+..|
T Consensus       229 ----------------dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--------~~nP~~l~~LAn~fyfK~  284 (1018)
T KOG2002|consen  229 ----------------DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--------NENPVALNHLANHFYFKK  284 (1018)
T ss_pred             ----------------ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHhhcc
Confidence                            34455666677776655544   445555555554332        233577899999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh-HHHHHHHHHHHHH
Q 006812          264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE-LLRAEIDAANMQI  342 (630)
Q Consensus       264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~  342 (630)
                      +|..+..+...++....     ..+..+..++++|.+|..+|++++|..+|.++.+.      +++ ....+..+|.+|.
T Consensus       285 dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~------~~d~~~l~~~GlgQm~i  353 (1018)
T KOG2002|consen  285 DYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA------DNDNFVLPLVGLGQMYI  353 (1018)
T ss_pred             cHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc------CCCCccccccchhHHHH
Confidence            99999999999987553     45677888999999999999999999999988775      333 3777889999999


Q ss_pred             HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 006812          343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE----KFADAKRCLEIACGILDKKETISPEEVADAYSEIS  418 (630)
Q Consensus       343 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  418 (630)
                      ..|+++.|...|++++...+.+.    .+...+|.+|...+    ..+.|..++.+++...        |....+|..++
T Consensus       354 ~~~dle~s~~~fEkv~k~~p~~~----etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--------~~d~~a~l~la  421 (1018)
T KOG2002|consen  354 KRGDLEESKFCFEKVLKQLPNNY----ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--------PVDSEAWLELA  421 (1018)
T ss_pred             HhchHHHHHHHHHHHHHhCcchH----HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--------cccHHHHHHHH
Confidence            99999999999999999766554    37778888888775    4566666766666554        56778999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC--ccHHHH
Q 006812          419 MQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH--FGVGYI  496 (630)
Q Consensus       419 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~  496 (630)
                      .++....-+ .++.+|..|+.+.......  ....+++++|..++..|++.+|...|.+|+.........+.  ......
T Consensus       422 ql~e~~d~~-~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~  498 (1018)
T KOG2002|consen  422 QLLEQTDPW-ASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL  498 (1018)
T ss_pred             HHHHhcChH-HHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence            998765544 5599999999998887554  33468899999999999999999999999997543322221  223456


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       497 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      .+++|.++...++++.|.+.|...+.        .||.+++++..+|.+....++..+|..++..++.+-..
T Consensus       499 ~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~  562 (1018)
T KOG2002|consen  499 KYNLARLLEELHDTEVAEEMYKSILK--------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS  562 (1018)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHH--------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence            88999999999999999999999998        78999999999998888899999999999999976443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.95  E-value=9.8e-25  Score=224.92  Aligned_cols=365  Identities=13%  Similarity=0.015  Sum_probs=283.7

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC
Q 006812          116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL  195 (630)
Q Consensus       116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  195 (630)
                      ......+...| ++++|+..++..+...          |....++..+|.+....|++++|+..+++++.+         
T Consensus        46 ~~~~~~~~~~g-~~~~A~~l~~~~l~~~----------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---------  105 (656)
T PRK15174         46 ILFAIACLRKD-ETDVGLTLLSDRVLTA----------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---------  105 (656)
T ss_pred             HHHHHHHHhcC-CcchhHHHhHHHHHhC----------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---------
Confidence            34455566777 9999999999988765          234567788999999999999999999999988         


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006812          196 GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKA  275 (630)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  275 (630)
                             .|....++..+|.++...|++++|+..|++++++.        |....++..+|.++...|++++|+..++++
T Consensus       106 -------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~  170 (656)
T PRK15174        106 -------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQ  170 (656)
T ss_pred             -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence                   33334567889999999999999999999998653        333567889999999999999999999987


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          276 LEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLK  355 (630)
Q Consensus       276 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  355 (630)
                      +...+     +++.   .+..++ .+...|++++|+..+++++...     .+........++.++...|++++|+..++
T Consensus       171 ~~~~P-----~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-----~~~~~~~~~~l~~~l~~~g~~~eA~~~~~  236 (656)
T PRK15174        171 AQEVP-----PRGD---MIATCL-SFLNKSRLPEDHDLARALLPFF-----ALERQESAGLAVDTLCAVGKYQEAIQTGE  236 (656)
T ss_pred             HHhCC-----CCHH---HHHHHH-HHHHcCCHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            76543     2222   233333 4788999999999988765541     11222334566888999999999999999


Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHhhccHHH----HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 006812          356 GVVRQTEKESETRALVFISMGKALCNQEKFAD----AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI  431 (630)
Q Consensus       356 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  431 (630)
                      +++...+.+    ..++..+|.++...|++++    |+..+++++.+.        |....++..+|.++...|++++|+
T Consensus       237 ~al~~~p~~----~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~  304 (656)
T PRK15174        237 SALARGLDG----AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAI  304 (656)
T ss_pred             HHHhcCCCC----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            999865443    5588899999999999986    789999988865        566688999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChh
Q 006812          432 SLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQ  511 (630)
Q Consensus       432 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  511 (630)
                      .++++++.+     .+..  ..++..+|.++...|++++|+..|++++.        .+|.....+..+|.++...|+++
T Consensus       305 ~~l~~al~l-----~P~~--~~a~~~La~~l~~~G~~~eA~~~l~~al~--------~~P~~~~~~~~~a~al~~~G~~d  369 (656)
T PRK15174        305 PLLQQSLAT-----HPDL--PYVRAMYARALRQVGQYTAASDEFVQLAR--------EKGVTSKWNRYAAAALLQAGKTS  369 (656)
T ss_pred             HHHHHHHHh-----CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHCCCHH
Confidence            999999986     2222  35778899999999999999999999987        24555556667899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812          512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQ  559 (630)
Q Consensus       512 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  559 (630)
                      +|+..|++++++..+..   .+....+...+...+...+...+...+.
T Consensus       370 eA~~~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~~~W~  414 (656)
T PRK15174        370 EAESVFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPERLDWA  414 (656)
T ss_pred             HHHHHHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccchhhHH
Confidence            99999999999754432   1223345566666666666554443333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.9e-24  Score=195.95  Aligned_cols=397  Identities=13%  Similarity=0.066  Sum_probs=303.5

Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhH
Q 006812          110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGR  189 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  189 (630)
                      ..+..+-..|..++..+ +|++||++|.+|+.+.++          .+..|.+++-+|...|+|++.++...+++++   
T Consensus       113 k~A~~lK~~GN~~f~~k-kY~eAIkyY~~AI~l~p~----------epiFYsNraAcY~~lgd~~~Vied~TkALEl---  178 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNK-KYDEAIKYYTQAIELCPD----------EPIFYSNRAACYESLGDWEKVIEDCTKALEL---  178 (606)
T ss_pred             HHHHHHHhhhhhhhhcc-cHHHHHHHHHHHHhcCCC----------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---
Confidence            34567788999999999 999999999999988733          2567889999999999999999999999998   


Q ss_pred             hhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHH------------------HHHH-----HHHHHhccc-h
Q 006812          190 LEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQ------------------KCLE-----IKELILEED-S  245 (630)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~-----~~~~~~~~~-~  245 (630)
                                   .|.+..++++.+..+..+|++++|+.-..                  +.|.     -.+..+..+ .
T Consensus       179 -------------~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~  245 (606)
T KOG0547|consen  179 -------------NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRP  245 (606)
T ss_pred             -------------CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCC
Confidence                         67788999999999999999999876432                  1111     111111111 1


Q ss_pred             ---HH--HHHHHHH--------------------HHHH--HHHhc---CHHHHHHHHHHHHHHHhhhcCCC-----CHHH
Q 006812          246 ---RE--LGVANRD--------------------LAEA--FVAVL---NFKEALPFGLKALEIHKKGLGHN-----SVEV  290 (630)
Q Consensus       246 ---~~--~~~~~~~--------------------la~~--~~~~g---~~~~A~~~~~~al~~~~~~~~~~-----~~~~  290 (630)
                         |.  ...+|..                    +...  +...+   .|.+|...+.+...........+     -...
T Consensus       246 p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~  325 (606)
T KOG0547|consen  246 PVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM  325 (606)
T ss_pred             CCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence               10  1111111                    1111  11122   46666666666554443222111     1245


Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL  370 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  370 (630)
                      +.++...|..+.-.|++..|...|+.++.+      .+.....|+.+|.+|....+.++....|.++..+.+.+++    
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d----  395 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD----  395 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc----
Confidence            778888899999999999999999999887      5555555999999999999999999999999998777766    


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      +|+..|+++.-++++++|..-|++++.+.        |..+..+..++.+..++++++++...|+++..-++..      
T Consensus       396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~--------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------  461 (606)
T KOG0547|consen  396 VYYHRGQMRFLLQQYEEAIADFQKAISLD--------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------  461 (606)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------
Confidence            89999999999999999999999999886        7888999999999999999999999999998864333      


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHhcC
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY-LELDRPQSAAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~  529 (630)
                       +.++...|.++..+++|++|++.|..++++-....+ .+. .+..+.+-|.+. .-.+++..|+.++++|++       
T Consensus       462 -~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~-~~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e-------  531 (606)
T KOG0547|consen  462 -PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL-IIV-NAAPLVHKALLVLQWKEDINQAENLLRKAIE-------  531 (606)
T ss_pred             -chHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc-ccc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHc-------
Confidence             358888999999999999999999999996433110 011 111222222222 234899999999999998       


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                       -+|..-.++..||.+..++|+.++|+++|++++.+.+.
T Consensus       532 -~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  532 -LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             -cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence             56777789999999999999999999999999987665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.94  E-value=4.5e-23  Score=217.50  Aligned_cols=396  Identities=11%  Similarity=0.000  Sum_probs=289.9

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      ++..+.++..+|..+...| ++++|+..|++++...+.          ...++..+|.++...|++++|+..+++++.. 
T Consensus        45 ~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~----------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-  112 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQ----------NDDYQRGLILTLADAGQYDEALVKAKQLVSG-  112 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            3566777899999999999 999999999999987522          2445678999999999999999999999987 


Q ss_pred             hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812          188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE  267 (630)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (630)
                                     .|.... +..+|.++...|++++|+..+++++++.        |....++..+|.++...|..++
T Consensus       113 ---------------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049        113 ---------------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             ---------------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHH
Confidence                           223344 7789999999999999999999999654        3335667778999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh-----ccccH---HHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHH
Q 006812          268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS-----GLEEH---QKALEQNELSQKVLKTWGLS-SELLRAEIDAA  338 (630)
Q Consensus       268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~---~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la  338 (630)
                      |+..++++.. .+..   ...........+..++.     ..+++   ++|+..++.+++........ +....+.....
T Consensus       169 Al~~l~~~~~-~p~~---~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l  244 (765)
T PRK10049        169 ALGAIDDANL-TPAE---KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL  244 (765)
T ss_pred             HHHHHHhCCC-CHHH---HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence            9998876553 1110   00000011112222222     22344   67788777766553322222 33344444423


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 006812          339 NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEIS  418 (630)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  418 (630)
                      ..+...|++++|+..|+++++..+..+..   +...+|.+|...|++++|+.+|++++.....    ...........++
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~----~~~~~~~~~~~L~  317 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKAEGQIIPPW---AQRWVASAYLKLHQPEKAQSILTELFYHPET----IADLSDEELADLF  317 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC----CCCCChHHHHHHH
Confidence            34467799999999999988764322222   3333688999999999999999997753211    1011124556677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCC-----CCCCch---hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          419 MQYESMNEFETAISLLKRTLALLEKLP-----QAQHSE---GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       419 ~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      .++...|++++|+.+++++....+...     ....|.   ..++..++.++...|++++|+..+++++.        ..
T Consensus       318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--------~~  389 (765)
T PRK10049        318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--------NA  389 (765)
T ss_pred             HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hC
Confidence            788999999999999999887532100     011111   34667899999999999999999999988        34


Q ss_pred             ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      |.....+..+|.++...|++++|+..+++++.        .+|+....+..+|.++...|++++|...++++++..
T Consensus       390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        390 PGNQGLRIDYASVLQARGWPRAAENELKKAEV--------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            66677999999999999999999999999998        446666799999999999999999999999999754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.4e-22  Score=182.14  Aligned_cols=385  Identities=15%  Similarity=0.147  Sum_probs=287.3

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      |..+..-+++|.+++.+. +|.+|+++|+-++...+..  ..   ......+.++|..+.+.|+|+.|+..|+..+....
T Consensus       234 ~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsi--nk---~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p  307 (840)
T KOG2003|consen  234 PNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSI--NK---DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP  307 (840)
T ss_pred             CCCceeeeeecceeeehh-hHHHHHHHHHHHHhhcccc--ch---hhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc
Confidence            445556678899999998 9999999999999877654  22   23566788999999999999999999998876522


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------------
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE---------------------------------  235 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------------  235 (630)
                                      .+. +-++|..|++..|+-++-.+.|.+.+.                                 
T Consensus       308 ----------------n~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~  370 (840)
T KOG2003|consen  308 ----------------NFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN  370 (840)
T ss_pred             ----------------cHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence                            111 112344444444444444444444332                                 


Q ss_pred             ------------------HHHHHhccc----------------h-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          236 ------------------IKELILEED----------------S-RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       236 ------------------~~~~~~~~~----------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                                        +......++                + +.....-.+.+.-+.+.|+++.|++.++-    ++
T Consensus       371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv----~~  446 (840)
T KOG2003|consen  371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV----FE  446 (840)
T ss_pred             HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH----HH
Confidence                              111111000                0 11112223445667788888888876542    22


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          281 KGLGHNSVEVAHDRRLLGVIYSGLE--EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVV  358 (630)
Q Consensus       281 ~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  358 (630)
                      +   .++.....+-++|..+++.+|  ++..|..+...++.+      +...+.++.+.|.+.+..|++++|.+.|++++
T Consensus       447 ~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal  517 (840)
T KOG2003|consen  447 K---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEAL  517 (840)
T ss_pred             h---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence            2   133334445567777766644  678888888877765      55667788899999999999999999999999


Q ss_pred             HHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          359 RQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTL  438 (630)
Q Consensus       359 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  438 (630)
                      .    +...-..+++++|..+..+|+.++|+.+|-+.-.+.        ...+.++..++.+|..+.+..+|++++.++.
T Consensus       518 ~----ndasc~ealfniglt~e~~~~ldeald~f~klh~il--------~nn~evl~qianiye~led~aqaie~~~q~~  585 (840)
T KOG2003|consen  518 N----NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------LNNAEVLVQIANIYELLEDPAQAIELLMQAN  585 (840)
T ss_pred             c----CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence            7    555557799999999999999999999999988777        4567899999999999999999999999887


Q ss_pred             HHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812          439 ALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA  518 (630)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  518 (630)
                      .+.       +.+..++..||.+|-+.|+-.+|.+++-....        -.|...++..+||..|....-+++|+.+|+
T Consensus       586 sli-------p~dp~ilskl~dlydqegdksqafq~~ydsyr--------yfp~nie~iewl~ayyidtqf~ekai~y~e  650 (840)
T KOG2003|consen  586 SLI-------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--------YFPCNIETIEWLAAYYIDTQFSEKAINYFE  650 (840)
T ss_pred             ccC-------CCCHHHHHHHHHHhhcccchhhhhhhhhhccc--------ccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            652       22346889999999999999999999887766        346677788899999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       519 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      ++--+        .|........++.|+.+.|+|++|.+.|+..-.
T Consensus       651 kaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  651 KAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             HHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            99663        466777788899999999999999999988743

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.93  E-value=1.8e-23  Score=185.47  Aligned_cols=329  Identities=19%  Similarity=0.185  Sum_probs=271.3

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCC
Q 006812          118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGG  197 (630)
Q Consensus       118 ~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  197 (630)
                      -|.-++..| ++...+.+|+.|++.-.+.      -......|..||.+|+.+++|++|+++...-+.+.+.+++..   
T Consensus        23 EGERLck~g-dcraGv~ff~aA~qvGTeD------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl---   92 (639)
T KOG1130|consen   23 EGERLCKMG-DCRAGVDFFKAALQVGTED------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL---   92 (639)
T ss_pred             HHHHHHhcc-chhhhHHHHHHHHHhcchH------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh---
Confidence            456677777 9999999999999876432      124566789999999999999999999998888887776654   


Q ss_pred             CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC-------------
Q 006812          198 SVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN-------------  264 (630)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------  264 (630)
                             .-+.+.-+||..+.-+|.|++|+.+..+-+.+.++.  .+......+++++|.+|...|+             
T Consensus        93 -------GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f  163 (639)
T KOG1130|consen   93 -------GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAF  163 (639)
T ss_pred             -------ccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccc
Confidence                   223455589999999999999999999999999987  6667778999999999998764             


Q ss_pred             -------HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 006812          265 -------FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA  337 (630)
Q Consensus       265 -------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  337 (630)
                             ++.|.++|..-+++.+...  +......++.+||..|+-+|+|+.|+.+.+.-+.+.+.+|+....-.++.++
T Consensus       164 ~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl  241 (639)
T KOG1130|consen  164 NAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL  241 (639)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc
Confidence                   4566777777777766542  3345567899999999999999999999999999999999998888999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          338 ANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       338 a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      |.++.-.|+++.|+++|+..+......  ....+...+.||..|.-..++++|+.|+.+-+.|.....  +......++.
T Consensus       242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~Racw  319 (639)
T KOG1130|consen  242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACW  319 (639)
T ss_pred             chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHH
Confidence            999999999999999999988765543  344577889999999999999999999999999887654  3345678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh
Q 006812          416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ  470 (630)
Q Consensus       416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  470 (630)
                      .||..+...|..++|+.+.+..+++..++.+.. .......++...-...|..+.
T Consensus       320 SLgna~~alg~h~kAl~fae~hl~~s~ev~D~s-gelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  320 SLGNAFNALGEHRKALYFAELHLRSSLEVNDTS-GELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc-hhhhhhhhhHHHHHHhCCCcc
Confidence            999999999999999999999999988875432 233455677777777776544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.93  E-value=5.1e-22  Score=209.56  Aligned_cols=404  Identities=12%  Similarity=0.009  Sum_probs=292.4

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCC
Q 006812          120 LKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSV  199 (630)
Q Consensus       120 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  199 (630)
                      .+....| ++++|+..+.++....          +..+.++..+|.++...|++++|+..|++++.+             
T Consensus        23 ~ia~~~g-~~~~A~~~~~~~~~~~----------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-------------   78 (765)
T PRK10049         23 QIALWAG-QDAEVITVYNRYRVHM----------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-------------   78 (765)
T ss_pred             HHHHHcC-CHHHHHHHHHHHHhhC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence            3445566 9999999998876522          234566888999999999999999999999988             


Q ss_pred             ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812          200 EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH  279 (630)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  279 (630)
                         .|....++..++.++...|++++|+..++++++..        |.... +..+|.++...|++++|+..+++++++.
T Consensus        79 ---~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~  146 (765)
T PRK10049         79 ---EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA  146 (765)
T ss_pred             ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence               22223456689999999999999999999998543        33345 8889999999999999999999999965


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhH-----HHHHHHHHHHHH-----HcCCH--
Q 006812          280 KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSEL-----LRAEIDAANMQI-----ALGKF--  347 (630)
Q Consensus       280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~la~~~~-----~~g~~--  347 (630)
                      +.     +   ..++..++.++...|..++|+..++++..       .|..     ......+..++.     ..+++  
T Consensus       147 P~-----~---~~~~~~la~~l~~~~~~e~Al~~l~~~~~-------~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~  211 (765)
T PRK10049        147 PQ-----T---QQYPTEYVQALRNNRLSAPALGAIDDANL-------TPAEKRDLEADAAAELVRLSFMPTRSEKERYAI  211 (765)
T ss_pred             CC-----C---HHHHHHHHHHHHHCCChHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence            42     2   34556678899999999999988875443       1111     111112222222     22345  


Q ss_pred             -HHHHHHHHHHHHHhhhcch---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Q 006812          348 -EEAINTLKGVVRQTEKESE---TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES  423 (630)
Q Consensus       348 -~~A~~~~~~~l~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  423 (630)
                       ++|+..++.+++..+.++.   ....+.......+...|++++|+..|+++++...     ..|..+..+  +|.+|..
T Consensus       212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~-----~~P~~a~~~--la~~yl~  284 (765)
T PRK10049        212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ-----IIPPWAQRW--VASAYLK  284 (765)
T ss_pred             HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC-----CCCHHHHHH--HHHHHHh
Confidence             7899999999877554432   2233333323344677999999999999765421     113333333  5889999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCCCC--chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh---c--CCCCc--cHH
Q 006812          424 MNEFETAISLLKRTLALLEKLPQAQH--SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES---F--GPKHF--GVG  494 (630)
Q Consensus       424 ~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~--~~~~~--~~~  494 (630)
                      .|++++|+..|++++..     .+..  ........++.++...|++++|+.+++++.......   +  ...+|  ...
T Consensus       285 ~g~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~  359 (765)
T PRK10049        285 LHQPEKAQSILTELFYH-----PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL  359 (765)
T ss_pred             cCCcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence            99999999999998763     1111  112456778888899999999999999988742100   0  00122  234


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-----
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH-----  569 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----  569 (630)
                      .++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|++.+++++++.+..     
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~  431 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV  431 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence            57788999999999999999999999883        46666899999999999999999999999999875331     


Q ss_pred             ----CCCchhHHHHHHHHHHHHHHHhcCC
Q 006812          570 ----GPSAQDELREARRLLEQLKIKASGA  594 (630)
Q Consensus       570 ----~~~~~~~~~~A~~~~~~~~~~~~~~  594 (630)
                          .....+++++|...++++.+.....
T Consensus       432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        432 EQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence                1124567999999999988764433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=5.8e-22  Score=195.73  Aligned_cols=311  Identities=12%  Similarity=0.025  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH
Q 006812          209 VHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV  288 (630)
Q Consensus       209 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  288 (630)
                      ..+..|..+...|++++|+..|+++++.        .|....++..+|.++...|++++|+.++++++....    ....
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~  104 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD----LTRE  104 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC----CCHH
Confidence            3445788899999999999999999854        244467889999999999999999999998876211    1122


Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch-H
Q 006812          289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE-T  367 (630)
Q Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~  367 (630)
                      .....+..+|.+|...|++++|+.+|+++++.      .+....++..++.++...|++++|+..+++++...+.... .
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  178 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE  178 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence            34467889999999999999999999987764      4556778889999999999999999999998876544322 2


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                      ....+..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++...     +
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p  245 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-----P  245 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----h
Confidence            34466788999999999999999999988764        3445677889999999999999999999988741     1


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                       .....++..++.+|...|++++|...++++++.        +|+.. .+..++.++...|++++|+..++++++.    
T Consensus       246 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~----  311 (389)
T PRK11788        246 -EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR----  311 (389)
T ss_pred             -hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Confidence             112345678889999999999999999988873        23322 3478899999999999999999998873    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHH
Q 006812          528 LGPHHADSIEACQNLSKAYSS--MGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       528 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~  568 (630)
                          .|+.......++..+..  .|+.++|+..+++.++..-.
T Consensus       312 ----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~  350 (389)
T PRK11788        312 ----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK  350 (389)
T ss_pred             ----CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence                35544333223322212  45777888877777754333

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.92  E-value=6e-23  Score=182.20  Aligned_cols=329  Identities=17%  Similarity=0.148  Sum_probs=273.4

Q ss_pred             HhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 006812          162 VMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELIL  241 (630)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  241 (630)
                      .-|.-+++.|++...+.+|+.|++.-.            +....+..+|..||.+|...++|++|+++...-+.+.+.+ 
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGT------------eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l-   88 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGT------------EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL-   88 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcc------------hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh-
Confidence            356778899999999999999998721            1134556789999999999999999999988877777665 


Q ss_pred             ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc---------------
Q 006812          242 EEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE---------------  306 (630)
Q Consensus       242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------  306 (630)
                       .+....+.+..+||.++...|.|++|+.+..+-+.+.+++.  +......++++||.+|...|+               
T Consensus        89 -gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~  165 (639)
T KOG1130|consen   89 -GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA  165 (639)
T ss_pred             -cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence             55566688889999999999999999999999999998764  445667889999999998764               


Q ss_pred             -----HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch--HHHHHHHHHHHHH
Q 006812          307 -----HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE--TRALVFISMGKAL  379 (630)
Q Consensus       307 -----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~  379 (630)
                           ++.|.++|..-+++...+|+......++.++|..|+-+|+|+.|+...+.-+.+.....+  ..-.++.++|.++
T Consensus       166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h  245 (639)
T KOG1130|consen  166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH  245 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence                 466788888888999999988888899999999999999999999999988887766432  3356889999999


Q ss_pred             HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 006812          380 CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIG  459 (630)
Q Consensus       380 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  459 (630)
                      .-.|+++.|+++|+..+.+..+..  +....+...+.||..|.-..++++|+.|+.+-+.|..... +......+++.||
T Consensus       246 iflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLg  322 (639)
T KOG1130|consen  246 IFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLG  322 (639)
T ss_pred             hhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHH
Confidence            999999999999999998887665  3356778899999999999999999999999999988873 3444567889999


Q ss_pred             HHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChh
Q 006812          460 WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQ  511 (630)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  511 (630)
                      ..+...|..++|+.+.++.+++..+..  +......+..++...-...|..+
T Consensus       323 na~~alg~h~kAl~fae~hl~~s~ev~--D~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  323 NAFNALGEHRKALYFAELHLRSSLEVN--DTSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhC--CcchhhhhhhhhHHHHHHhCCCc
Confidence            999999999999999999999888762  22334455667777777776643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.6e-20  Score=167.39  Aligned_cols=392  Identities=15%  Similarity=0.096  Sum_probs=279.7

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      ...++..|.++...| ...+|+..|..++...+          ..-.+|..|+.+....       +.......-   . 
T Consensus       164 ~fllYL~Gvv~k~~~-~~s~A~~sfv~~v~~~P----------~~W~AWleL~~lit~~-------e~~~~l~~~---l-  221 (559)
T KOG1155|consen  164 EFLLYLYGVVLKELG-LLSLAIDSFVEVVNRYP----------WFWSAWLELSELITDI-------EILSILVVG---L-  221 (559)
T ss_pred             hHHHHHHHHHHHhhc-hHHHHHHHHHHHHhcCC----------cchHHHHHHHHhhchH-------HHHHHHHhc---C-
Confidence            456677788888887 88888888887765442          2233444444332111       111110000   0 


Q ss_pred             hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 006812          192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPF  271 (630)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  271 (630)
                              +. . .....-+.++.++....+.++++.-++....+       ..|.....-...|.+...+.++++|+..
T Consensus       222 --------~~-~-~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~  284 (559)
T KOG1155|consen  222 --------PS-D-MHWMKKFFLKKAYQELHQHEEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESV  284 (559)
T ss_pred             --------cc-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence                    00 0 11122234677777777888887776664432       1233345566778999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 006812          272 GLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI  351 (630)
Q Consensus       272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  351 (630)
                      |+...+-.+     -..+...++.   ++.+-..+-. .+.++.+  .....   +.-...+..-+|+.|...++.++|+
T Consensus       285 Feei~knDP-----YRl~dmdlyS---N~LYv~~~~s-kLs~LA~--~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv  350 (559)
T KOG1155|consen  285 FEEIRKNDP-----YRLDDMDLYS---NVLYVKNDKS-KLSYLAQ--NVSNI---DKYRPETCCIIANYYSLRSEHEKAV  350 (559)
T ss_pred             HHHHHhcCC-----CcchhHHHHh---HHHHHHhhhH-HHHHHHH--HHHHh---ccCCccceeeehhHHHHHHhHHHHH
Confidence            998776322     2223334443   3333222211 1222211  11111   2233456677899999999999999


Q ss_pred             HHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 006812          352 NTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI  431 (630)
Q Consensus       352 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  431 (630)
                      .+|+++++..+    ....+|..+|.-|..+.+...|+..|+.|+++.        |..-.+|+.+|+.|..++-+.=|+
T Consensus       351 ~YFkRALkLNp----~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQaYeim~Mh~YaL  418 (559)
T KOG1155|consen  351 MYFKRALKLNP----KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQAYEIMKMHFYAL  418 (559)
T ss_pred             HHHHHHHhcCc----chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHHHhhhhHHHHHhcchHHHH
Confidence            99999999644    446699999999999999999999999999997        556689999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChh
Q 006812          432 SLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQ  511 (630)
Q Consensus       432 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  511 (630)
                      -+|++|...     .  +.+..+|..||.+|.+.++.++|+++|.+++..     +.   ....++..||.+|.++++.+
T Consensus       419 yYfqkA~~~-----k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~d---te~~~l~~LakLye~l~d~~  483 (559)
T KOG1155|consen  419 YYFQKALEL-----K--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GD---TEGSALVRLAKLYEELKDLN  483 (559)
T ss_pred             HHHHHHHhc-----C--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----cc---cchHHHHHHHHHHHHHHhHH
Confidence            999999985     2  224568999999999999999999999999983     22   24458999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHh
Q 006812          512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKA  591 (630)
Q Consensus       512 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~  591 (630)
                      +|..+|++.++.. ..-|...+++..+...|+.-+.+.+++++|..+..+++..        ....++|..++++++...
T Consensus       484 eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--------~~e~eeak~LlReir~~~  554 (559)
T KOG1155|consen  484 EAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--------ETECEEAKALLREIRKIQ  554 (559)
T ss_pred             HHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHhc
Confidence            9999999999976 4446677888888899999999999999999998888742        355788999999887664


Q ss_pred             c
Q 006812          592 S  592 (630)
Q Consensus       592 ~  592 (630)
                      .
T Consensus       555 ~  555 (559)
T KOG1155|consen  555 A  555 (559)
T ss_pred             C
Confidence            4

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.8e-21  Score=176.76  Aligned_cols=384  Identities=15%  Similarity=0.113  Sum_probs=280.1

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      ..+..+-+.|+-+++.|+|++|+++|.+|+.+.                |.-...|.+++-||...|+|++.++...+++
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~----------------p~epiFYsNraAcY~~lgd~~~Vied~TkAL  176 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC----------------PDEPIFYSNRAACYESLGDWEKVIEDCTKAL  176 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC----------------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence            456677889999999999999999999999982                1213567799999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHH------------------HHHHH-----HhhhcCC-CCH--
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGL------------------KALEI-----HKKGLGH-NSV--  288 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-~~~--  288 (630)
                      ++        +|..+.+++..+..+...|++++|+.-..                  +.|..     ....+.. ..|  
T Consensus       177 El--------~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~l  248 (606)
T KOG0547|consen  177 EL--------NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVL  248 (606)
T ss_pred             hc--------CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence            65        46668999999999999999999886432                  21111     1111111 111  


Q ss_pred             ---HHHHHHHH------------------------HHHHHhc-cccHHHHHHHHHHHHHHHHHcCC------C-hhHHHH
Q 006812          289 ---EVAHDRRL------------------------LGVIYSG-LEEHQKALEQNELSQKVLKTWGL------S-SELLRA  333 (630)
Q Consensus       289 ---~~~~~~~~------------------------la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~------~-~~~~~~  333 (630)
                         ....+|+.                        +-.++.. ...|.+|...+.+..........      . ...+.+
T Consensus       249 PS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~a  328 (606)
T KOG0547|consen  249 PSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEA  328 (606)
T ss_pred             CcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH
Confidence               11111111                        0001110 12455555555554433222110      0 234677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812          334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA  413 (630)
Q Consensus       334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  413 (630)
                      +...|..++-.|++-.|...++.++...+..+.    .|..++.+|...++-++-...|.+|..+.        |..+.+
T Consensus       329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~----lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--------p~n~dv  396 (606)
T KOG0547|consen  329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS----LYIKRAAAYADENQSEKMWKDFNKAEDLD--------PENPDV  396 (606)
T ss_pred             HHHhhhhhhhcCCchhhhhhHHHHHhcCcccch----HHHHHHHHHhhhhccHHHHHHHHHHHhcC--------CCCCch
Confidence            788899999999999999999999997665543    58999999999999999999999998876        455689


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812          414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV  493 (630)
Q Consensus       414 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  493 (630)
                      |+..|++++-.+++++|+.-|++++.+.       +..+..+..++.+.+++++++++...|+.+..        ..|..
T Consensus       397 YyHRgQm~flL~q~e~A~aDF~Kai~L~-------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--------kFP~~  461 (606)
T KOG0547|consen  397 YYHRGQMRFLLQQYEEAIADFQKAISLD-------PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--------KFPNC  461 (606)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHhhcC-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCC
Confidence            9999999999999999999999999872       22345778999999999999999999999998        45777


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHcCC-
Q 006812          494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA-YSSMGSYTLAIEFQQRAIDAWESHGP-  571 (630)
Q Consensus       494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~-  571 (630)
                      ++++...|.++..+++|++|++.|.+|+++-....+. +. .+..+.+-|.+ +.-.+++..|.+++++|+++-++..- 
T Consensus       462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A  539 (606)
T KOG0547|consen  462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQA  539 (606)
T ss_pred             chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHH
Confidence            8899999999999999999999999999975431110 00 11122222222 23458999999999999976544211 


Q ss_pred             --------CchhHHHHHHHHHHHHHHHh
Q 006812          572 --------SAQDELREARRLLEQLKIKA  591 (630)
Q Consensus       572 --------~~~~~~~~A~~~~~~~~~~~  591 (630)
                              -..+++++|+++|++....+
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                    16688999999999865443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=8.4e-21  Score=187.49  Aligned_cols=309  Identities=15%  Similarity=0.063  Sum_probs=242.6

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      ...+..|..+...| ++++|+..|+++++..          |....++..+|.++...|++++|+..+++++...     
T Consensus        36 ~~~y~~g~~~~~~~-~~~~A~~~~~~al~~~----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----   99 (389)
T PRK11788         36 SRDYFKGLNFLLNE-QPDKAIDLFIEMLKVD----------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-----   99 (389)
T ss_pred             cHHHHHHHHHHhcC-ChHHHHHHHHHHHhcC----------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-----
Confidence            44566788888888 9999999999998764          2345678889999999999999999999887630     


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG  272 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (630)
                           .  .........+..+|.+|...|++++|+..|+++++.        .|....++..++.++...|++++|+..+
T Consensus       100 -----~--~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~  164 (389)
T PRK11788        100 -----D--LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVA  164 (389)
T ss_pred             -----C--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHH
Confidence                 0  001223457889999999999999999999998743        3344678899999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 006812          273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAIN  352 (630)
Q Consensus       273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  352 (630)
                      +++++..+.   .........+..+|.++...|++++|+.+++++++.      .|....++..+|.++...|++++|+.
T Consensus       165 ~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~  235 (389)
T PRK11788        165 ERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA------DPQCVRASILLGDLALAQGDYAAAIE  235 (389)
T ss_pred             HHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH------CcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            998875432   112234556778999999999999999999998876      45567788899999999999999999


Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 006812          353 TLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAIS  432 (630)
Q Consensus       353 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  432 (630)
                      .+++++...+.   ....++..++.+|...|++++|...+++++...        |+. ..+..++.++...|++++|+.
T Consensus       236 ~~~~~~~~~p~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~-~~~~~la~~~~~~g~~~~A~~  303 (389)
T PRK11788        236 ALERVEEQDPE---YLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGA-DLLLALAQLLEEQEGPEAAQA  303 (389)
T ss_pred             HHHHHHHHChh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-hHHHHHHHHHHHhCCHHHHHH
Confidence            99999876332   234577889999999999999999999987763        222 234789999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH---cCChhhHHHHHHHHHHH
Q 006812          433 LLKRTLALLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIPYLESAAER  481 (630)
Q Consensus       433 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~  481 (630)
                      .++++++.        .|+...+..+...+..   .|+.++|+..+++.++.
T Consensus       304 ~l~~~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        304 LLREQLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHHHHHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            99999885        1222233333333332   56899999999988863

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.90  E-value=1.7e-19  Score=191.60  Aligned_cols=433  Identities=10%  Similarity=-0.014  Sum_probs=226.8

Q ss_pred             hcHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhh
Q 006812           90 KTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYS  169 (630)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~  169 (630)
                      +...+..+.+..|....--+.....+..+-..+...| ..++|..+++....          +   ...+|..+-..+..
T Consensus       384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~----------p---d~~Tyn~LL~a~~k  449 (1060)
T PLN03218        384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRN----------P---TLSTFNMLMSVCAS  449 (1060)
T ss_pred             cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCC----------C---CHHHHHHHHHHHHh
Confidence            3444555555555443321111222222333344444 66666665544211          1   12345555566666


Q ss_pred             ccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHH
Q 006812          170 FKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELG  249 (630)
Q Consensus       170 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  249 (630)
                      .|++++|...|+++.+.              ...|. ..+|..+...|.+.|+.++|...|++..+..      -.|+ .
T Consensus       450 ~g~~e~A~~lf~~M~~~--------------Gl~pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~Pd-v  507 (1060)
T PLN03218        450 SQDIDGALRVLRLVQEA--------------GLKAD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEAN-V  507 (1060)
T ss_pred             CcCHHHHHHHHHHHHHc--------------CCCCC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCC-H
Confidence            66666666666665543              00111 2345556666666666666666666544210      0111 3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      .+|..+...|.+.|++++|+.+|.++....-      .|+ ..+|+.+...|.+.|++++|.+.+.+....  ..+..|+
T Consensus       508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv------~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD  578 (1060)
T PLN03218        508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNV------KPD-RVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPD  578 (1060)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCc
Confidence            4566666666666666666666666543211      111 344566666666666666666666654432  1122222


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                       ..++..+...|.+.|++++|.++|+.+.+..-..   ...+|..+...|.+.|++++|...|++.....   .  . |+
T Consensus       579 -~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p---~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---v--~-PD  648 (1060)
T PLN03218        579 -HITVGALMKACANAGQVDRAKEVYQMIHEYNIKG---TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---V--K-PD  648 (1060)
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C--C-CC
Confidence             3455556666666666666666666655532111   12356666666666666666666666543321   1  1 11


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK  489 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (630)
                       ..+|..+...|...|++++|.++++++.+.      ...++..++..+...|.+.|++++|.++|++....     + -
T Consensus       649 -~~TynsLI~a~~k~G~~eeA~~l~~eM~k~------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g-~  715 (1060)
T PLN03218        649 -EVFFSALVDVAGHAGDLDKAFEILQDARKQ------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-----K-L  715 (1060)
T ss_pred             -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-C
Confidence             235556666666666666666666665541      22234445666666666666666666666655431     1 1


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW---  566 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---  566 (630)
                      .| ...+|+.|...|.+.|++++|.++|+++....      ..|+. .+|..+...+.+.|++++|.+++.++++..   
T Consensus       716 ~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G------i~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p  787 (1060)
T PLN03218        716 RP-TVSTMNALITALCEGNQLPKALEVLSEMKRLG------LCPNT-ITYSILLVASERKDDADVGLDLLSQAKEDGIKP  787 (1060)
T ss_pred             CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            12 23456666666666666666666666654321      12332 255555566666666666666666654310   


Q ss_pred             ----------------HH------------cCC--CchhHHHHHHHHHHHHHHHhcCCCCCc
Q 006812          567 ----------------ES------------HGP--SAQDELREARRLLEQLKIKASGASINQ  598 (630)
Q Consensus       567 ----------------~~------------~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~  598 (630)
                                      .+            .+.  .......+|..+|++|.+.+..|+...
T Consensus       788 d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T  849 (1060)
T PLN03218        788 NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV  849 (1060)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence                            00            000  112334679999999999888877543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.90  E-value=1.9e-20  Score=197.46  Aligned_cols=423  Identities=11%  Similarity=-0.009  Sum_probs=306.4

Q ss_pred             hhcHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHh
Q 006812           89 AKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANY  168 (630)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~  168 (630)
                      .+...+....+.++............+..+...+...+ +++.|...+..+.+..      -.  | ...++..+...|.
T Consensus       100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~g------~~--~-~~~~~n~Li~~y~  169 (697)
T PLN03081        100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALK-SIRCVKAVYWHVESSG------FE--P-DQYMMNRVLLMHV  169 (697)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhC------CC--c-chHHHHHHHHHHh
Confidence            34455666666666543322223345566666677777 8888888887765432      11  2 2446677888999


Q ss_pred             hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccch---
Q 006812          169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDS---  245 (630)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---  245 (630)
                      +.|++++|...|++...       +       +     ..+|+.+...|.+.|++++|+..|++.++..   ..++.   
T Consensus       170 k~g~~~~A~~lf~~m~~-------~-------~-----~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~~~t~  227 (697)
T PLN03081        170 KCGMLIDARRLFDEMPE-------R-------N-----LASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEPRTF  227 (697)
T ss_pred             cCCCHHHHHHHHhcCCC-------C-------C-----eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCChhhH
Confidence            99999999888876421       1       1     2457778888999999999999998875321   00000   


Q ss_pred             ----------------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812          246 ----------------------------RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL  297 (630)
Q Consensus       246 ----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  297 (630)
                                                  .....+++.+...|.+.|++++|...|++...           ....+|+.+
T Consensus       228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~~~vt~n~l  296 (697)
T PLN03081        228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----------KTTVAWNSM  296 (697)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----------CChhHHHHH
Confidence                                        01123456778889999999999988876421           123568889


Q ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812          298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK  377 (630)
Q Consensus       298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~  377 (630)
                      ...|...|++++|+..|++...    .|..|+ ..++..+...+...|++++|.+.+..+++..-..+   ..+++.+..
T Consensus       297 i~~y~~~g~~~eA~~lf~~M~~----~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d---~~~~~~Li~  368 (697)
T PLN03081        297 LAGYALHGYSEEALCLYYEMRD----SGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD---IVANTALVD  368 (697)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC---eeehHHHHH
Confidence            9999999999999999986443    344444 45788889999999999999999998887542222   347888999


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 006812          378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSAR  457 (630)
Q Consensus       378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  457 (630)
                      .|.+.|++++|.+.|++..+          + ...+|+.+...|...|+.++|++.|+++...      ...|+..++..
T Consensus       369 ~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g~~Pd~~T~~~  431 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE------GVAPNHVTFLA  431 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCCHHHHHH
Confidence            99999999999999987532          1 2357899999999999999999999998763      33456678889


Q ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 006812          458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIE  537 (630)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  537 (630)
                      +...+.+.|..++|.++|+...+..    + ..| ....|..+..+|.+.|++++|.+.++++         +..|+. .
T Consensus       432 ll~a~~~~g~~~~a~~~f~~m~~~~----g-~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~~-~  495 (697)
T PLN03081        432 VLSACRYSGLSEQGWEIFQSMSENH----R-IKP-RAMHYACMIELLGREGLLDEAYAMIRRA---------PFKPTV-N  495 (697)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhc----C-CCC-CccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCCH-H
Confidence            9999999999999999999877521    1 122 2346888999999999999999988653         123333 4


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC---------CCchhHHHHHHHHHHHHHHHhcCCC
Q 006812          538 ACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG---------PSAQDELREARRLLEQLKIKASGAS  595 (630)
Q Consensus       538 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~A~~~~~~~~~~~~~~~  595 (630)
                      +|..|...+...|+.+.|...+++.+++.....         -...|++++|.++++.+.+++....
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            789999999999999999999888765432211         0155889999999999999877543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.90  E-value=2.6e-19  Score=190.15  Aligned_cols=406  Identities=11%  Similarity=0.024  Sum_probs=307.0

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhc
Q 006812          114 VGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEE  193 (630)
Q Consensus       114 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  193 (630)
                      .+..+-..+...| ++++|+..|++....       +... .....+..+...+...|..++|..+++....       .
T Consensus       372 ~~~~~y~~l~r~G-~l~eAl~Lfd~M~~~-------gvv~-~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------p  435 (1060)
T PLN03218        372 EYIDAYNRLLRDG-RIKDCIDLLEDMEKR-------GLLD-MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------P  435 (1060)
T ss_pred             HHHHHHHHHHHCc-CHHHHHHHHHHHHhC-------CCCC-chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------C
Confidence            3344444455667 999999999875432       1111 1233344556777888999999888754321       1


Q ss_pred             CCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006812          194 GLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGL  273 (630)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  273 (630)
                             +     ..+|..+-..+...|++++|...|.++.+..      -.| ...++..+...|.+.|++++|..+|+
T Consensus       436 -------d-----~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~p-D~~tynsLI~~y~k~G~vd~A~~vf~  496 (1060)
T PLN03218        436 -------T-----LSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKA-DCKLYTTLISTCAKSGKVDAMFEVFH  496 (1060)
T ss_pred             -------C-----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence                   1     2567778888999999999999998866321      112 24678899999999999999999999


Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 006812          274 KALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINT  353 (630)
Q Consensus       274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  353 (630)
                      ++.+..       ......+|+.+...|.+.|++++|+..|.+...    .+..|+ ..++..+...|.+.|++++|.++
T Consensus       497 eM~~~G-------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~l  564 (1060)
T PLN03218        497 EMVNAG-------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDV  564 (1060)
T ss_pred             HHHHcC-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            887531       111246788899999999999999999876443    354454 66889999999999999999999


Q ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 006812          354 LKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISL  433 (630)
Q Consensus       354 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  433 (630)
                      +.++........++ ..+|..+...|.+.|++++|.+.|+...+..   .    +....+|+.+...|.+.|++++|..+
T Consensus       565 f~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g---i----~p~~~tynsLI~ay~k~G~~deAl~l  636 (1060)
T PLN03218        565 LAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN---I----KGTPEVYTIAVNSCSQKGDWDFALSI  636 (1060)
T ss_pred             HHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---C----CCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            99987642211222 4578889999999999999999999865431   1    12346889999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHH
Q 006812          434 LKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSA  513 (630)
Q Consensus       434 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  513 (630)
                      |.++...      .-.|+..++..+...|.+.|++++|.++++++.+.       .......++..+...|.+.|++++|
T Consensus       637 f~eM~~~------Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA  703 (1060)
T PLN03218        637 YDDMKKK------GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKA  703 (1060)
T ss_pred             HHHHHHc------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            9998762      23456678899999999999999999999998762       2333456899999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC------------chhHHHHHH
Q 006812          514 AQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS------------AQDELREAR  581 (630)
Q Consensus       514 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~A~  581 (630)
                      ...|+++....      ..|+. .+|..|...|.+.|++++|.++|+++...  ...|+            ..+.+++|.
T Consensus       704 ~~lf~eM~~~g------~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty~sLL~a~~k~G~le~A~  774 (1060)
T PLN03218        704 LELYEDIKSIK------LRPTV-STMNALITALCEGNQLPKALEVLSEMKRL--GLCPNTITYSILLVASERKDDADVGL  774 (1060)
T ss_pred             HHHHHHHHHcC------CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999876531      23443 57999999999999999999999998642  12222            457889999


Q ss_pred             HHHHHHHHHhcCCCC
Q 006812          582 RLLEQLKIKASGASI  596 (630)
Q Consensus       582 ~~~~~~~~~~~~~~~  596 (630)
                      .+++++.+.+..++.
T Consensus       775 ~l~~~M~k~Gi~pd~  789 (1060)
T PLN03218        775 DLLSQAKEDGIKPNL  789 (1060)
T ss_pred             HHHHHHHHcCCCCCH
Confidence            999999988877764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=6.8e-21  Score=171.44  Aligned_cols=385  Identities=15%  Similarity=0.145  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      .++++++..|.... -+.+|+..|+-.++--        --|.....-.++|.+|++..+|.+|+.+|+.++.....+..
T Consensus       202 svl~nlaqqy~~nd-m~~ealntyeiivknk--------mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink  272 (840)
T KOG2003|consen  202 SVLFNLAQQYEAND-MTAEALNTYEIIVKNK--------MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK  272 (840)
T ss_pred             HHHHHHHHHhhhhH-HHHHHhhhhhhhhccc--------ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccch
Confidence            56788888877776 7888888887654321        11222333467999999999999999999999987554432


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG  272 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (630)
                      +           ....++.++|..+.+.|+|+.|+..|+.+++..+        .. .+-.+|-.+++..|+-++-.+.|
T Consensus       273 ~-----------~rikil~nigvtfiq~gqy~dainsfdh~m~~~p--------n~-~a~~nl~i~~f~i~d~ekmkeaf  332 (840)
T KOG2003|consen  273 D-----------MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP--------NF-IAALNLIICAFAIGDAEKMKEAF  332 (840)
T ss_pred             h-----------hHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc--------cH-HhhhhhhhhheecCcHHHHHHHH
Confidence            2           3346788999999999999999999999886543        32 34556788999999999999999


Q ss_pred             HHHHHHHhhhc------CCCCHHH---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-------------------Hc
Q 006812          273 LKALEIHKKGL------GHNSVEV---AHDRRLLGVIYSGLEEHQKALEQNELSQKVLK-------------------TW  324 (630)
Q Consensus       273 ~~al~~~~~~~------~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-------------------~~  324 (630)
                      ++.+.+-....      ..+.|..   ..+..+=-.-.+...+-..|.++...+.++..                   ..
T Consensus       333 ~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s  412 (840)
T KOG2003|consen  333 QKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKAS  412 (840)
T ss_pred             HHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHh
Confidence            99987533211      1122211   11111101111112222333444333333321                   11


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHhh
Q 006812          325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ--EKFADAKRCLEIACGILDKK  402 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~  402 (630)
                      ...+.....-.+.+..+.+.|+++.|++.++-.-+.   +......+-.+|..+++.+  .++.+|..+.+.++.+.+  
T Consensus       413 ~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--  487 (840)
T KOG2003|consen  413 QHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--  487 (840)
T ss_pred             hhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--
Confidence            111222333445677788999999998887653332   2222233445555555543  356667777776665542  


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812          403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL  482 (630)
Q Consensus       403 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (630)
                            ..+.++.+.|.+-+..|++++|.+.|++++.       .+..-+.+++++|..+..+|+.++|+++|-+...+.
T Consensus       488 ------yn~~a~~nkgn~~f~ngd~dka~~~ykeal~-------ndasc~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  488 ------YNAAALTNKGNIAFANGDLDKAAEFYKEALN-------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             ------cCHHHhhcCCceeeecCcHHHHHHHHHHHHc-------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence                  2345566666666677777777777777665       122234566777777777777777777776665554


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812          483 KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQ  560 (630)
Q Consensus       483 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  560 (630)
                              ...+.++..++.+|..+.+..+|++++-++..+.        |....++..||.+|.+.|+..+|.+++-
T Consensus       555 --------~nn~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~y  616 (840)
T KOG2003|consen  555 --------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHY  616 (840)
T ss_pred             --------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence                    2234566667777777777777777766665532        2222455566666666666665555543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.89  E-value=2.3e-19  Score=189.19  Aligned_cols=394  Identities=13%  Similarity=0.030  Sum_probs=291.3

Q ss_pred             HHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHH
Q 006812           96 LQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSD  175 (630)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  175 (630)
                      ...+..+....-.|+ ...+..+...|...| ++++|..+|++..+       +      ...+|+.+...|.+.|++++
T Consensus       143 ~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~-------~------~~~t~n~li~~~~~~g~~~~  207 (697)
T PLN03081        143 KAVYWHVESSGFEPD-QYMMNRVLLMHVKCG-MLIDARRLFDEMPE-------R------NLASWGTIIGGLVDAGNYRE  207 (697)
T ss_pred             HHHHHHHHHhCCCcc-hHHHHHHHHHHhcCC-CHHHHHHHHhcCCC-------C------CeeeHHHHHHHHHHCcCHHH
Confidence            344444444444443 456677778888888 99999998887421       1      23467888999999999999


Q ss_pred             HHHHHHHHHHHHhHhhhcC--------CCCCC-------------ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          176 SLGYLSKANRMLGRLEEEG--------LGGSV-------------EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       176 A~~~~~~al~~~~~~~~~~--------~~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      |+..|++....-.......        .....             .... ....+++.+...|.+.|++++|...|++..
T Consensus       208 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~  286 (697)
T PLN03081        208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMP  286 (697)
T ss_pred             HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC-ccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            9999998864310000000        00000             0000 011345678889999999999999988642


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN  314 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  314 (630)
                              .   ....+|+.+...|...|++++|+.+|+++....-      .| ...++..+...+...|++++|.+.+
T Consensus       287 --------~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~------~p-d~~t~~~ll~a~~~~g~~~~a~~i~  348 (697)
T PLN03081        287 --------E---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV------SI-DQFTFSIMIRIFSRLALLEHAKQAH  348 (697)
T ss_pred             --------C---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------CC-CHHHHHHHHHHHHhccchHHHHHHH
Confidence                    1   1246799999999999999999999998765211      11 2356888999999999999999998


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                      ....+.    |. +....++..+...|.+.|++++|...|++..+   ++    ..+|+.+...|.+.|+.++|.+.|++
T Consensus       349 ~~m~~~----g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d----~~t~n~lI~~y~~~G~~~~A~~lf~~  416 (697)
T PLN03081        349 AGLIRT----GF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KN----LISWNALIAGYGNHGRGTKAVEMFER  416 (697)
T ss_pred             HHHHHh----CC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CC----eeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence            876653    33 33466788999999999999999999998643   11    34899999999999999999999998


Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHH
Q 006812          395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPY  474 (630)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  474 (630)
                      .....   ..   |+ ..++..+...+...|..++|.++|+.+.+.     ....|....|..+..+|.+.|++++|.+.
T Consensus       417 M~~~g---~~---Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-----~g~~p~~~~y~~li~~l~r~G~~~eA~~~  484 (697)
T PLN03081        417 MIAEG---VA---PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN-----HRIKPRAMHYACMIELLGREGLLDEAYAM  484 (697)
T ss_pred             HHHhC---CC---CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-----cCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence            66431   11   22 356888888999999999999999988653     12335556889999999999999999998


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 006812          475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL  554 (630)
Q Consensus       475 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  554 (630)
                      +++.         +..|. ..+|..+...+...|+++.|...+++.+.+        .|+....|..|+.+|...|++++
T Consensus       485 ~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~  546 (697)
T PLN03081        485 IRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAE  546 (697)
T ss_pred             HHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHH
Confidence            7643         12233 447889999999999999999999887652        34444678899999999999999


Q ss_pred             HHHHHHHHHHH
Q 006812          555 AIEFQQRAIDA  565 (630)
Q Consensus       555 A~~~~~~al~~  565 (630)
                      |.+++++..+.
T Consensus       547 A~~v~~~m~~~  557 (697)
T PLN03081        547 AAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHc
Confidence            99999988754

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=4.9e-21  Score=181.41  Aligned_cols=304  Identities=16%  Similarity=0.148  Sum_probs=236.4

Q ss_pred             hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          205 IMHAVHLELANVKTAMG--RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                      .+...+..+|..|....  +..+|+..|.+ +       ...++....++..+|..|+.+++|++|..+|+.+-++.+-.
T Consensus       315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r  386 (638)
T KOG1126|consen  315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR  386 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            34455666666666544  34677777766 2       23445667889999999999999999999999987765421


Q ss_pred             cCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812          283 LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  362 (630)
                      .     +-..+|   ..+.+.+.+- -++.++-+  .+.   ..++..+.+|..+|.+|.-+++++.|++.|++++.+. 
T Consensus       387 v-----~~meiy---ST~LWHLq~~-v~Ls~Laq--~Li---~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-  451 (638)
T KOG1126|consen  387 V-----KGMEIY---STTLWHLQDE-VALSYLAQ--DLI---DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-  451 (638)
T ss_pred             c-----cchhHH---HHHHHHHHhh-HHHHHHHH--HHH---hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-
Confidence            1     111222   2222222211 12222211  222   2257778899999999999999999999999999854 


Q ss_pred             hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          363 KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE  442 (630)
Q Consensus       363 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  442 (630)
                         +..+.+|..+|.-+.....+|.|..+|+.|+.+.        +..-.+|+.+|.+|.++++++.|+-+|++|+++  
T Consensus       452 ---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--  518 (638)
T KOG1126|consen  452 ---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--  518 (638)
T ss_pred             ---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--
Confidence               4446689999999999999999999999999876        567799999999999999999999999999986  


Q ss_pred             hCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          443 KLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                         .  +....+...+|.++.+.|+.++|+.+|++|+.+        +|......+..|.++...+++++|+..+++..+
T Consensus       519 ---N--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~  585 (638)
T KOG1126|consen  519 ---N--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKE  585 (638)
T ss_pred             ---C--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence               2  223457789999999999999999999999983        345555778999999999999999999999877


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          523 IMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      +        -|+...+++.+|.+|.+.|+.+.|+..|--|.++
T Consensus       586 ~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  586 L--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             h--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            4        4777889999999999999999999999888764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.88  E-value=1.1e-19  Score=191.72  Aligned_cols=340  Identities=15%  Similarity=0.055  Sum_probs=259.3

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC---HHHHHHH--
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR---REEALEH--  229 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~--  229 (630)
                      .....+..++......|++++|...++++...-.            +... ...+...++.+|...+.   ..+++..  
T Consensus       374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~  440 (987)
T PRK09782        374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG------------DARL-SQTLMARLASLLESHPYLATPAKVAILSK  440 (987)
T ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc------------cccc-CHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence            3456677889999999999999999999877410            0000 01222356666666655   3333222  


Q ss_pred             --------------------HHHHHHHHHHHhccchHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          230 --------------------LQKCLEIKELILEEDSRE--LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       230 --------------------~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                                          +..+..    .+ +..|.  ...++.++|.++.. +++.+|+..+.+++...+.     .
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~----al-~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-----~  509 (987)
T PRK09782        441 PLPLAEQRQWQSQLPGIADNCPAIVR----LL-GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-----A  509 (987)
T ss_pred             ccccchhHHHHhhhhhhhhhHHHHHH----hc-ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-----h
Confidence                                222221    11 23344  67889999999987 8999999999998876432     1


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET  367 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  367 (630)
                          .....+|.++...|++++|+..++++...      .+. ...+..+|.++...|++++|+.++++++...+..   
T Consensus       510 ----~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~---  575 (987)
T PRK09782        510 ----WQHRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD---  575 (987)
T ss_pred             ----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc---
Confidence                22555677778999999999999875432      222 2346788999999999999999999999864333   


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                       ...+..++......|++++|+..+++++++.        |. ...+.++|.++...|++++|+..|++++.+     .+
T Consensus       576 -~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~P  640 (987)
T PRK09782        576 -NALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EP  640 (987)
T ss_pred             -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CC
Confidence             2344455666667799999999999998775        34 578899999999999999999999999986     32


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                      .  ...++.++|.++...|++++|+..|+++++        .+|....++.++|.++...|++++|+.+|+++++     
T Consensus       641 d--~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~-----  705 (987)
T PRK09782        641 N--NSNYQAALGYALWDSGDIAQSREMLERAHK--------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID-----  705 (987)
T ss_pred             C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----
Confidence            2  345889999999999999999999999998        3467778999999999999999999999999998     


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          528 LGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       528 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                         ..|+.+.+....|.+.....+++.|.+.+.++..+
T Consensus       706 ---l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        706 ---DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             ---cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence               45777788889999999999999999999888754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.88  E-value=3.6e-19  Score=187.75  Aligned_cols=328  Identities=13%  Similarity=0.034  Sum_probs=246.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC---HHHH---------------
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN---FKEA---------------  268 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A---------------  268 (630)
                      ...+..++......|++++|...|+++......     ..........++.+|...+.   ..++               
T Consensus       376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  450 (987)
T PRK09782        376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD-----ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW  450 (987)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc-----cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence            456778899999999999999999998853111     10112334467777776655   3333               


Q ss_pred             -------HHHHHHHHHHHhhhcCCCCHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812          269 -------LPFGLKALEIHKKGLGHNSVE--VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN  339 (630)
Q Consensus       269 -------~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  339 (630)
                             ...+........     ..|.  ...++.++|.++.. +++.+|+..+.+++..      .|+. .....+|.
T Consensus       451 ~~~~~~~~~~~~~~~~al~-----~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~------~Pd~-~~~L~lA~  517 (987)
T PRK09782        451 QSQLPGIADNCPAIVRLLG-----DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR------QPDA-WQHRAVAY  517 (987)
T ss_pred             HhhhhhhhhhHHHHHHhcc-----cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh------CCch-HHHHHHHH
Confidence                   222333322222     2233  56788999999987 8999999999888765      2332 23666788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 006812          340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM  419 (630)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  419 (630)
                      ++...|++++|+..+++++...+. .    ..+..+|.++...|++++|..++++++...        |.....+..++.
T Consensus       518 al~~~Gr~eeAi~~~rka~~~~p~-~----~a~~~la~all~~Gd~~eA~~~l~qAL~l~--------P~~~~l~~~La~  584 (987)
T PRK09782        518 QAYQVEDYATALAAWQKISLHDMS-N----EDLLAAANTAQAAGNGAARDRWLQQAEQRG--------LGDNALYWWLHA  584 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHhccCCC-c----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CccHHHHHHHHH
Confidence            888999999999999997654222 1    246788999999999999999999998753        233344555666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812          420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN  499 (630)
Q Consensus       420 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  499 (630)
                      .....|++++|+..+++++++     .+   ....+.++|.++.+.|++++|+..|++++.        ..|....++.+
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l-----~P---~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--------l~Pd~~~a~~n  648 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNI-----AP---SANAYVARATIYRQRHNVPAAVSDLRAALE--------LEPNNSNYQAA  648 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHh-----CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHH
Confidence            666779999999999999986     22   245889999999999999999999999998        35677789999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC--CchhHH
Q 006812          500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP--SAQDEL  577 (630)
Q Consensus       500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~  577 (630)
                      +|.++...|++++|+..|+++++        .+|+...++.++|.++...|++++|+.+|++++++.+....  ...+.+
T Consensus       649 LG~aL~~~G~~eeAi~~l~~AL~--------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~  720 (987)
T PRK09782        649 LGYALWDSGDIAQSREMLERAHK--------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQ  720 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence            99999999999999999999999        44666789999999999999999999999999987665322  234555


Q ss_pred             HHHHHHHHHHHH
Q 006812          578 REARRLLEQLKI  589 (630)
Q Consensus       578 ~~A~~~~~~~~~  589 (630)
                      ..+...|+...+
T Consensus       721 ~~~~~~~~~a~~  732 (987)
T PRK09782        721 NQQRFNFRRLHE  732 (987)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=4.6e-21  Score=181.56  Aligned_cols=303  Identities=15%  Similarity=0.130  Sum_probs=234.7

Q ss_pred             HHHHHHHhhHHHhhcc--ChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFK--RFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      ....+..+|..|....  +..+|+..|++ +-.               .......++.++|..|+.+++|++|..+|+.+
T Consensus       316 l~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp~---------------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~  379 (638)
T KOG1126|consen  316 LMELLRGLGEGYRSLSQYNCREALNLFEK-LPS---------------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLV  379 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHH---------------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666666665443  34566666655 211               12333467889999999999999999999987


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHH
Q 006812          234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ  313 (630)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  313 (630)
                      -++.+-.        ....-....+++...+--+---+.+..++        ..+....+|..+|++|.-+++++.|+++
T Consensus       380 r~~~p~r--------v~~meiyST~LWHLq~~v~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~  443 (638)
T KOG1126|consen  380 RRIEPYR--------VKGMEIYSTTLWHLQDEVALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKC  443 (638)
T ss_pred             Hhhcccc--------ccchhHHHHHHHHHHhhHHHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHH
Confidence            6544322        22222223333333332221122222222        2333446677889999999999999999


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812          314 NELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLE  393 (630)
Q Consensus       314 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  393 (630)
                      |++|+++      +|....+|..+|.-+....++|.|...|+.++...+++    -.+|+.+|.+|.++++++.|+-+|+
T Consensus       444 f~RAiQl------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh----YnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  444 FKRAIQL------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH----YNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             HHHhhcc------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh----hHHHHhhhhheeccchhhHHHHHHH
Confidence            9999998      88899999999999999999999999999999965554    5599999999999999999999999


Q ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHH
Q 006812          394 IACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIP  473 (630)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (630)
                      +|+++.        |........+|.++...|+.++|+.+|++|+.+     ++.  +....+..|.+++..+++++|+.
T Consensus       514 kA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~k--n~l~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  514 KAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPK--NPLCKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             hhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCC--CchhHHHHHHHHHhhcchHHHHH
Confidence            999986        566678888999999999999999999999986     322  23466889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       474 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      .+++..++        .|+.+.++..+|.+|.+.|+.+.|+..|--|.++
T Consensus       579 ~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  579 ELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            99988774        4778889999999999999999999999988874

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.5e-18  Score=160.63  Aligned_cols=386  Identities=18%  Similarity=0.163  Sum_probs=249.6

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC
Q 006812          116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL  195 (630)
Q Consensus       116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  195 (630)
                      -..|...+..| ||+.|+.+|.+++.+.+.          ....|.+...+|..+|+|++|++.-.+.+++         
T Consensus         6 k~kgnaa~s~~-d~~~ai~~~t~ai~l~p~----------nhvlySnrsaa~a~~~~~~~al~da~k~~~l---------   65 (539)
T KOG0548|consen    6 KEKGNAAFSSG-DFETAIRLFTEAIMLSPT----------NHVLYSNRSAAYASLGSYEKALKDATKTRRL---------   65 (539)
T ss_pred             HHHHHhhcccc-cHHHHHHHHHHHHccCCC----------ccchhcchHHHHHHHhhHHHHHHHHHHHHhc---------
Confidence            34667777887 999999999999987632          3446678889999999999999999998888         


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc------------
Q 006812          196 GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL------------  263 (630)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------  263 (630)
                             .|.++..|..+|..+.-.|+|++|+..|.+.|+..        |.....+.+++.++....            
T Consensus        66 -------~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d--------~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~  130 (539)
T KOG0548|consen   66 -------NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD--------PSNKQLKTGLAQAYLEDYAADQLFTKPYFH  130 (539)
T ss_pred             -------CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC--------CchHHHHHhHHHhhhHHHHhhhhccCcHHH
Confidence                   66778899999999999999999999999999643        333444555555541110            


Q ss_pred             ---------CHHHHHHHHHHHHHHHhhhc---------------------------------------CC----------
Q 006812          264 ---------NFKEALPFGLKALEIHKKGL---------------------------------------GH----------  285 (630)
Q Consensus       264 ---------~~~~A~~~~~~al~~~~~~~---------------------------------------~~----------  285 (630)
                               ++-.....|...++..++..                                       .+          
T Consensus       131 ~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  210 (539)
T KOG0548|consen  131 EKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPI  210 (539)
T ss_pred             HHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCc
Confidence                     00011111222222211100                                       00          


Q ss_pred             --CCH------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          286 --NSV------EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGV  357 (630)
Q Consensus       286 --~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  357 (630)
                        +..      ..+.....+|...+...++..|+++|..++.+      . ..+..+.+.+.+|+..|.+.+.+.....+
T Consensus       211 ~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a  283 (539)
T KOG0548|consen  211 IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL------A-TDITYLNNIAAVYLERGKYAECIELCEKA  283 (539)
T ss_pred             cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH------h-hhhHHHHHHHHHHHhccHHHHhhcchHHH
Confidence              000      12233445566666666666666666666655      2 33444455566666666666666665555


Q ss_pred             HHHhhhc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812          358 VRQTEKE---SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL  434 (630)
Q Consensus       358 l~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  434 (630)
                      ++.....   ...++.++..+|..|...++++.|+.+|.+++.-.+.                ..+.......++++...
T Consensus       284 ~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----------------~~~ls~lk~~Ek~~k~~  347 (539)
T KOG0548|consen  284 VEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----------------PDLLSKLKEAEKALKEA  347 (539)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----------------HHHHHHHHHHHHHHHHH
Confidence            5443321   1223444444555666666666666666665443311                11122222333333332


Q ss_pred             HHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHH
Q 006812          435 KRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAA  514 (630)
Q Consensus       435 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  514 (630)
                      +...-+     ++.  ...-...-|..++..|+|..|+..|.+++.        ..|+.+..|.+.|.||..+|.+..|+
T Consensus       348 e~~a~~-----~pe--~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL  412 (539)
T KOG0548|consen  348 ERKAYI-----NPE--KAEEEREKGNEAFKKGDYPEAVKHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEAL  412 (539)
T ss_pred             HHHHhh-----Chh--HHHHHHHHHHHHHhccCHHHHHHHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHH
Confidence            222111     111  122334558999999999999999999988        45888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812          515 QVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK  590 (630)
Q Consensus       515 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~  590 (630)
                      ...+.+++        .+|.....|..-|.++..+.+|++|.+.|+++++.-        ..-.+++..+.+....
T Consensus       413 ~Da~~~ie--------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  413 KDAKKCIE--------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHh--------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHH
Confidence            99999998        478888999999999999999999999999998753        2334455555554444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=7.4e-19  Score=163.19  Aligned_cols=397  Identities=16%  Similarity=0.157  Sum_probs=279.8

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh------
Q 006812          115 GLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG------  188 (630)
Q Consensus       115 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------  188 (630)
                      -+.+|++++..+ +++.|......- .+.          .....|.+..+.++....+|++|...+.++-....      
T Consensus        52 ~~~~aq~l~~~~-~y~ra~~lit~~-~le----------~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~  119 (611)
T KOG1173|consen   52 IYWLAQVLYLGR-QYERAAHLITTY-KLE----------KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYE  119 (611)
T ss_pred             HHHHHHHHHhhh-HHHHHHHHHHHh-hhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcc
Confidence            356888888888 888887766542 111          12345777899999999999999998874411100      


Q ss_pred             HhhhcCCCCCCcc---chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc-----------------------
Q 006812          189 RLEEEGLGGSVED---IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE-----------------------  242 (630)
Q Consensus       189 ~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------  242 (630)
                      +.....+..+...   ........++..|.+|....+.++|...|.+|+-.......                       
T Consensus       120 ~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l  199 (611)
T KOG1173|consen  120 KDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESL  199 (611)
T ss_pred             hhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcc
Confidence            0000000111000   11223456677899999999999999999887643211000                       


Q ss_pred             ------cch--------------------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812          243 ------EDS--------------------------------RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG  284 (630)
Q Consensus       243 ------~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  284 (630)
                            ..+                                ....+.+...+..++..++|.+..+..+..++..+    
T Consensus       200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp----  275 (611)
T KOG1173|consen  200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP----  275 (611)
T ss_pred             cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC----
Confidence                  000                                01122333344555556666666666665555433    


Q ss_pred             CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812          285 HNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE  364 (630)
Q Consensus       285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  364 (630)
                       -++.  ..-..+| ++...|+..   +.|.-+.++.+.   .|..+.+|+.+|..|...|++.+|..+|.++..+.+.-
T Consensus       276 -fh~~--~~~~~ia-~l~el~~~n---~Lf~lsh~LV~~---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f  345 (611)
T KOG1173|consen  276 -FHLP--CLPLHIA-CLYELGKSN---KLFLLSHKLVDL---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF  345 (611)
T ss_pred             -CCcc--hHHHHHH-HHHHhcccc---hHHHHHHHHHHh---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc
Confidence             1222  2222345 444555443   334333344332   46778889999999999999999999999998865544


Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812          365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  444 (630)
                          +.+|...|..+...|..++|+.+|..|-+++....        .-...+|.-|...++++-|..+|.+|+.+.+. 
T Consensus       346 ----gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h--------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-  412 (611)
T KOG1173|consen  346 ----GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH--------LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-  412 (611)
T ss_pred             ----cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc--------chHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-
Confidence                44999999999999999999999999999885433        33455888899999999999999999997432 


Q ss_pred             CCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          445 PQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                            +..++..+|.+.+..+.|.+|..+|+.++...+.... ..+....++.+||.++.+++.+++|+.+|++++.+ 
T Consensus       413 ------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-  484 (611)
T KOG1173|consen  413 ------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-  484 (611)
T ss_pred             ------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-
Confidence                  2357899999999999999999999999976666533 33456668999999999999999999999999994 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       525 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                             .|..+.++..+|.+|..+|+++.|+++|.+++.+
T Consensus       485 -------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  485 -------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             -------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence                   4666689999999999999999999999999965

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.9e-18  Score=156.38  Aligned_cols=308  Identities=15%  Similarity=0.099  Sum_probs=240.5

Q ss_pred             HHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          158 MCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK  237 (630)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  237 (630)
                      ..-+.++.++....+.++++.-++....+       +        .+....+-...|.+...+.++++|+..|+....  
T Consensus       228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~-------g--------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k--  290 (559)
T KOG1155|consen  228 MKKFFLKKAYQELHQHEEALQKKERLSSV-------G--------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK--  290 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--
Confidence            33455778888888888888777665544       0        122223445688999999999999999998763  


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 006812          238 ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS  317 (630)
Q Consensus       238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  317 (630)
                            ++|....-+....++++-.++-.+---+.+.+..+.+        -...+...+|+.|.-.++.++|+.+|++|
T Consensus       291 ------nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK--------yR~ETCCiIaNYYSlr~eHEKAv~YFkRA  356 (559)
T KOG1155|consen  291 ------NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK--------YRPETCCIIANYYSLRSEHEKAVMYFKRA  356 (559)
T ss_pred             ------cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc--------CCccceeeehhHHHHHHhHHHHHHHHHHH
Confidence                  3343333333334444444332222222333333322        12244556799999999999999999999


Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812          318 QKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG  397 (630)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  397 (630)
                      +++      +|....++..+|.-|..+.+...|++.|+.++++.+.+.    .+|+.+|+.|..++...=|+-+|++|..
T Consensus       357 LkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy----RAWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  357 LKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY----RAWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             Hhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH----HHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            998      889999999999999999999999999999999877664    4999999999999999999999999988


Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                      ..        |.....|..||.+|.+.++.++|+++|.+++..     +  .....++..||.+|.+.++.++|..+|++
T Consensus       427 ~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~--dte~~~l~~LakLye~l~d~~eAa~~yek  491 (559)
T KOG1155|consen  427 LK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----G--DTEGSALVRLAKLYEELKDLNEAAQYYEK  491 (559)
T ss_pred             cC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----c--ccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            75        556689999999999999999999999999985     2  12346899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          478 AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       478 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      .++.. ...|...+.+..+...|+.-+.+.+++++|..+..+++.
T Consensus       492 ~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  492 YVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            99966 334556777888888899999999999999998887766

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.87  E-value=4e-18  Score=167.06  Aligned_cols=391  Identities=12%  Similarity=0.048  Sum_probs=287.8

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      ...++..+...+..| ++++|...+.++++..+          ....+|..||.+|..+|+.+++...+-.|-.+     
T Consensus       139 l~~ll~eAN~lfarg-~~eeA~~i~~EvIkqdp----------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----  202 (895)
T KOG2076|consen  139 LRQLLGEANNLFARG-DLEEAEEILMEVIKQDP----------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----  202 (895)
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCc----------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----
Confidence            456778888889998 99999999999988763          34668899999999999999999998777666     


Q ss_pred             hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 006812          192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPF  271 (630)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  271 (630)
                          +       |.....|..++.....+|++.+|.-+|.+|++..        |.........+.+|.+.|+...|...
T Consensus       203 ----~-------p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~  263 (895)
T KOG2076|consen  203 ----N-------PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMET  263 (895)
T ss_pred             ----C-------CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHH
Confidence                1       2223567789999999999999999999999654        33367788899999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 006812          272 GLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI  351 (630)
Q Consensus       272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  351 (630)
                      |.+++...+..   +.......-...+..+...++-+.|++.++.++..    +.+......+..++.++.....++.|.
T Consensus       264 f~~l~~~~p~~---d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~----~~~~~~~ed~ni~ael~l~~~q~d~~~  336 (895)
T KOG2076|consen  264 FLQLLQLDPPV---DIERIEDLIRRVAHYFITHNERERAAKALEGALSK----EKDEASLEDLNILAELFLKNKQSDKAL  336 (895)
T ss_pred             HHHHHhhCCch---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHhHHHHHhh
Confidence            99999876521   22233334445678888888889999999988773    222233344557888999999999998


Q ss_pred             HHHHHHHHHh----------------------hh---cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          352 NTLKGVVRQT----------------------EK---ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       352 ~~~~~~l~~~----------------------~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      ..........                      +.   .......+...++.+..+.++..+++..+..--.       ..
T Consensus       337 ~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-------~~  409 (895)
T KOG2076|consen  337 MKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-------VW  409 (895)
T ss_pred             HHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-------CC
Confidence            8877655410                      00   0111111345555556666666666554432111       12


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                      ..+....+..++.++...|++.+|+.++.....      .+....+.+|..+|.+|..+|.+++|+++|++++.      
T Consensus       410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~------~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~------  477 (895)
T KOG2076|consen  410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITN------REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI------  477 (895)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc------CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh------
Confidence            346678899999999999999999999998766      23333467899999999999999999999999998      


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD-VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                        ..|....+...|+.++..+|+.++|.+.++....--. ..-+...+....+......++...|+.++=+..-...+..
T Consensus       478 --~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~  555 (895)
T KOG2076|consen  478 --LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD  555 (895)
T ss_pred             --cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              3466777889999999999999999998887441000 0000112333467788899999999999855555555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.84  E-value=3.5e-17  Score=169.26  Aligned_cols=418  Identities=11%  Similarity=-0.034  Sum_probs=281.1

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      .|......+..+.+.++.| +++.|+..|+++++..+..     . +..    ..+..++...|+.++|+.++++++.- 
T Consensus        30 ~p~~~~~~y~~aii~~r~G-d~~~Al~~L~qaL~~~P~~-----~-~av----~dll~l~~~~G~~~~A~~~~eka~~p-   97 (822)
T PRK14574         30 NPAMADTQYDSLIIRARAG-DTAPVLDYLQEESKAGPLQ-----S-GQV----DDWLQIAGWAGRDQEVIDVYERYQSS-   97 (822)
T ss_pred             CccchhHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCccc-----h-hhH----HHHHHHHHHcCCcHHHHHHHHHhccC-
Confidence            3556667778888888888 9999999999988776332     0 111    15667777779999999999988721 


Q ss_pred             hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812          188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE  267 (630)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (630)
                                     .+.....+..+|.++..+|++++|++.|+++++..        |....++..++.+|...++.++
T Consensus        98 ---------------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~~~l~gLa~~y~~~~q~~e  154 (822)
T PRK14574         98 ---------------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNPDLISGMIMTQADAGRGGV  154 (822)
T ss_pred             ---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHhhcCCHHH
Confidence                           11112344456889999999999999999988543        2224556677899999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH
Q 006812          268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF  347 (630)
Q Consensus       268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  347 (630)
                      |+..++++....+.        . ..+..++.++...++..+|+..++++++.      .|.....+..+..+....|-.
T Consensus       155 Al~~l~~l~~~dp~--------~-~~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~  219 (822)
T PRK14574        155 VLKQATELAERDPT--------V-QNYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIV  219 (822)
T ss_pred             HHHHHHHhcccCcc--------h-HHHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCc
Confidence            99998888765332        1 11234455665577776788888887765      344444444444444444433


Q ss_pred             HHHH------------------------------------------------HHHHHHHHHhhhcc---hHHHHHHHHHH
Q 006812          348 EEAI------------------------------------------------NTLKGVVRQTEKES---ETRALVFISMG  376 (630)
Q Consensus       348 ~~A~------------------------------------------------~~~~~~l~~~~~~~---~~~~~~~~~la  376 (630)
                      ..|.                                                ..++..+...+..+   +....+....-
T Consensus       220 ~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl  299 (822)
T PRK14574        220 EPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRL  299 (822)
T ss_pred             HHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence            3333                                                33333333222222   22233444555


Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHH
Q 006812          377 KALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSA  456 (630)
Q Consensus       377 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  456 (630)
                      .++...|++.+++..|+.......     .-|.  .+....|..|...++.++|+.+|++++.-.... ...........
T Consensus       300 ~aL~~r~r~~~vi~~y~~l~~~~~-----~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~-~~~~~~~~~~~  371 (822)
T PRK14574        300 GALLVRHQTADLIKEYEAMEAEGY-----KMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKT-FRNSDDLLDAD  371 (822)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhcCC-----CCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc-cCCCcchHHHH
Confidence            667778888888888876432211     1133  355668999999999999999999987632111 01112233346


Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHH---hcC----CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812          457 RIGWLLLLTGKVPQAIPYLESAAERLKE---SFG----PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  529 (630)
                      .|-..|...+++++|..++++..+...-   .++    ..+|+.......++.++...|++.+|.+.+++.+.       
T Consensus       372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-------  444 (822)
T PRK14574        372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-------  444 (822)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Confidence            7888999999999999999998762210   011    24677788888999999999999999999999987       


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------CchhHHHHHHHHHHHHHHHh
Q 006812          530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP---------SAQDELREARRLLEQLKIKA  591 (630)
Q Consensus       530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~A~~~~~~~~~~~  591 (630)
                       ..|....+...+|.++...|.+.+|...++.+..+.+....         ...+++++|..+.+.+.+..
T Consensus       445 -~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        445 -TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             -hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence             44666688899999999999999999999887755322111         14567777777776665443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.84  E-value=6.9e-18  Score=165.39  Aligned_cols=349  Identities=13%  Similarity=0.083  Sum_probs=260.4

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      ...+...|+..+..|++++|...+.+++..                .|.....|+.||.+|..+|+.+++....-.|-.+
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL  202 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ----------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL  202 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            455667888888899999999999999998                4555678999999999999999999887766532


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006812          237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL  316 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  316 (630)
                      .     +.+   ...|..++....++|++.+|.-+|.+|+...+        .........+.+|.+.|+...|...|.+
T Consensus       203 ~-----p~d---~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p--------~n~~~~~ers~L~~~~G~~~~Am~~f~~  266 (895)
T KOG2076|consen  203 N-----PKD---YELWKRLADLSEQLGNINQARYCYSRAIQANP--------SNWELIYERSSLYQKTGDLKRAMETFLQ  266 (895)
T ss_pred             C-----CCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            2     333   36788999999999999999999999998643        2355667889999999999999999998


Q ss_pred             HHHHHHHcCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812          317 SQKVLKTWGLSSE-LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA  395 (630)
Q Consensus       317 a~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  395 (630)
                      .+....  ..+.. ........+..+...++-+.|++.+..++.....  ......++.++.++.....++.|.......
T Consensus       267 l~~~~p--~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~--~~~~ed~ni~ael~l~~~q~d~~~~~i~~~  342 (895)
T KOG2076|consen  267 LLQLDP--PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD--EASLEDLNILAELFLKNKQSDKALMKIVDD  342 (895)
T ss_pred             HHhhCC--chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence            887632  11112 2223334577788888889999999998872221  111335667888999999999998877655


Q ss_pred             HH----------------------HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812          396 CG----------------------ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS  453 (630)
Q Consensus       396 ~~----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  453 (630)
                      ..                      +.... ..-++++..+...++.+..+.++..+++..+..--.      -.....+.
T Consensus       343 ~~r~~e~d~~e~~~~~~~~~~~~~~~~~~-~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n------~~~~d~~d  415 (895)
T KOG2076|consen  343 RNRESEKDDSEWDTDERRREEPNALCEVG-KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN------VWVSDDVD  415 (895)
T ss_pred             hccccCCChhhhhhhhhccccccccccCC-CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc------CChhhhHH
Confidence            44                      11100 001112222355666666666776666655432211      11122366


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      .+..++.+|...|++.+|+.++..+...       .....+.+|..+|.||..+|.+++|+++|++++.        ..|
T Consensus       416 L~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--------~~p  480 (895)
T KOG2076|consen  416 LYLDLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--------LAP  480 (895)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--------cCC
Confidence            8899999999999999999999988762       2233467899999999999999999999999998        457


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                      +..++...|+.++..+|++++|.+.+.+..
T Consensus       481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  481 DNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            777899999999999999999998887743

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=6.3e-18  Score=157.09  Aligned_cols=274  Identities=14%  Similarity=0.067  Sum_probs=225.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .+....+..++..++|.+..+..+..++..     +-++  .-.-..+| ++...|+..+=..+-.+.++        ..
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-----pfh~--~~~~~~ia-~l~el~~~n~Lf~lsh~LV~--------~y  308 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEKD-----PFHL--PCLPLHIA-CLYELGKSNKLFLLSHKLVD--------LY  308 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-----CCCc--chHHHHHH-HHHHhcccchHHHHHHHHHH--------hC
Confidence            455567888899999998888888777543     2222  22334456 77777776654444444443        45


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET  367 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  367 (630)
                      |..+..|+.+|..|...|++.+|..+|.++-.+      ++....+|...|..+...|..++|+..|..|-+..+..+. 
T Consensus       309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~l------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-  381 (611)
T KOG1173|consen  309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTL------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-  381 (611)
T ss_pred             CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-
Confidence            566778899999999999999999999998877      7788889999999999999999999999999998877654 


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                         -...+|.-|...+++.-|.++|.+|+.+.        |....++..+|.+....+.|.+|..+|+.++...+.....
T Consensus       382 ---P~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e  450 (611)
T KOG1173|consen  382 ---PSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE  450 (611)
T ss_pred             ---hHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence               35667888999999999999999999988        5556888999999999999999999999999777776544


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      ......++.+||.++.+++++++|+.+|++++.        ..|..+.++..+|.+|..+|+++.|+++|.+++.+
T Consensus       451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            432345679999999999999999999999998        34667778999999999999999999999999985

>PLN03077 Protein ECB2; Provisional

Probab=99.84  E-value=5.7e-17  Score=175.48  Aligned_cols=330  Identities=12%  Similarity=-0.017  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcC
Q 006812          115 GLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEG  194 (630)
Q Consensus       115 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  194 (630)
                      +..+...+...+ .++.|...+..+++....      .+   ....+.+-..|.+.|+.+.|...|++...       + 
T Consensus        89 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~------~~---~~~~n~li~~~~~~g~~~~A~~~f~~m~~-------~-  150 (857)
T PLN03077         89 YVALFRLCEWKR-AVEEGSRVCSRALSSHPS------LG---VRLGNAMLSMFVRFGELVHAWYVFGKMPE-------R-  150 (857)
T ss_pred             HHHHHHHHhhCC-CHHHHHHHHHHHHHcCCC------CC---chHHHHHHHHHHhCCChHHHHHHHhcCCC-------C-
Confidence            344444455555 677777777766543211      11   12334455566677777777666654321       0 


Q ss_pred             CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc------------------------------
Q 006812          195 LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEED------------------------------  244 (630)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------  244 (630)
                            +     ..+|+.+...|.+.|++++|+..|.+.....   ..++                              
T Consensus       151 ------d-----~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g---~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~  216 (857)
T PLN03077        151 ------D-----LFSWNVLVGGYAKAGYFDEALCLYHRMLWAG---VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF  216 (857)
T ss_pred             ------C-----eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence                  1     1345566666777777777777776654210   0000                              


Q ss_pred             -hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          245 -SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       245 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                       ......+++.+...|.+.|++++|...|++...       +    ...+|+.+...|.+.|++++|+..|.+....   
T Consensus       217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~----d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~---  282 (857)
T PLN03077        217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-------R----DCISWNAMISGYFENGECLEGLELFFTMREL---  282 (857)
T ss_pred             CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------C----CcchhHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence             000123456677778888888888888776421       1    1245777777888888888888877764332   


Q ss_pred             cCCChh----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812          324 WGLSSE----------------------------------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       324 ~~~~~~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                       |..|+                                  ...+++.+...|.+.|++++|..+|++...   ++    .
T Consensus       283 -g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d----~  354 (857)
T PLN03077        283 -SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KD----A  354 (857)
T ss_pred             -CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CC----e
Confidence             22222                                  233344444445555555555554444321   00    1


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC
Q 006812          370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH  449 (630)
Q Consensus       370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  449 (630)
                      .+|+.+...|.+.|++++|.+.|++....   ...++.    .++..+-..+...|++++|.+++..+.+.      ...
T Consensus       355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~Pd~----~t~~~ll~a~~~~g~~~~a~~l~~~~~~~------g~~  421 (857)
T PLN03077        355 VSWTAMISGYEKNGLPDKALETYALMEQD---NVSPDE----ITIASVLSACACLGDLDVGVKLHELAERK------GLI  421 (857)
T ss_pred             eeHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCCCc----eeHHHHHHHHhccchHHHHHHHHHHHHHh------CCC
Confidence            24444555555555555555555443221   111111    23333334445555555555555544432      122


Q ss_pred             chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          450 SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      +...++..+...|.+.|++++|.+.|++..+          + ...+|+.+...|...|++++|+..|++++.
T Consensus       422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~  483 (857)
T PLN03077        422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE----------K-DVISWTSIIAGLRLNNRCFEALIFFRQMLL  483 (857)
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3345666777777777777777777765432          1 123677788888888888888888888753

>PLN03077 Protein ECB2; Provisional

Probab=99.83  E-value=1.4e-16  Score=172.55  Aligned_cols=406  Identities=11%  Similarity=-0.027  Sum_probs=232.1

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      ..|..+-..|...| ++++|+.+|.+.....      -.  | ...++..+...+...|+.+.|.+.+..+.+.      
T Consensus       254 ~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g------~~--P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~------  317 (857)
T PLN03077        254 ISWNAMISGYFENG-ECLEGLELFFTMRELS------VD--P-DLMTITSVISACELLGDERLGREMHGYVVKT------  317 (857)
T ss_pred             chhHHHHHHHHhCC-CHHHHHHHHHHHHHcC------CC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHh------
Confidence            45666666677777 8888888887765421      00  1 1123334444444555555555555444332      


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG  272 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (630)
                              ...+ ...+++.+...|.+.|++++|...|++...       ++    ..+|+.+...|.+.|++++|+++|
T Consensus       318 --------g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d----~~s~n~li~~~~~~g~~~~A~~lf  377 (857)
T PLN03077        318 --------GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------KD----AVSWTAMISGYEKNGLPDKALETY  377 (857)
T ss_pred             --------CCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC----eeeHHHHHHHHHhCCCHHHHHHHH
Confidence                    0001 123455555666666666666665554210       11    234555555555666666666555


Q ss_pred             HHHHHHHhhh----------------------------cCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc
Q 006812          273 LKALEIHKKG----------------------------LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW  324 (630)
Q Consensus       273 ~~al~~~~~~----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  324 (630)
                      +++.+..-..                            ..........+++.|...|.+.|++++|.+.|++..      
T Consensus       378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~------  451 (857)
T PLN03077        378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP------  451 (857)
T ss_pred             HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC------
Confidence            5543211000                            000011112345556666777777777766665421      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH-------------------------------HHHHH
Q 006812          325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR-------------------------------ALVFI  373 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-------------------------------~~~~~  373 (630)
                         .....+|..+...|...|++++|+.+|+++......+....                               ...++
T Consensus       452 ---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n  528 (857)
T PLN03077        452 ---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN  528 (857)
T ss_pred             ---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence               11234566677777777777777777777664322111100                               00122


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS  453 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  453 (630)
                      .+...|.+.|++++|...|+..            .....+|+.+...|...|+.++|+++|++..+.      ...|+..
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~~  590 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDEV  590 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCcc
Confidence            3345566666666666655542            012356777888888888888888888876652      2234445


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      ++..+...+.+.|++++|..+|+...+..     .-.|+ ...|..+..++.+.|++++|.+.+++.-         ..|
T Consensus       591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---------~~p  655 (857)
T PLN03077        591 TFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---------ITP  655 (857)
T ss_pred             cHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---------CCC
Confidence            66677777888888888888888776421     12232 3577788888888888888888877641         123


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------CchhHHHHHHHHHHHHHHHhcCCCCC
Q 006812          534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP---------SAQDELREARRLLEQLKIKASGASIN  597 (630)
Q Consensus       534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~A~~~~~~~~~~~~~~~~~  597 (630)
                      + ..+|..|-..+...|+.+.|....++++++-+....         ...|++++|.++.+.|++++...++-
T Consensus       656 d-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g  727 (857)
T PLN03077        656 D-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG  727 (857)
T ss_pred             C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence            3 245666666777788888877777766654322111         14578999999999999998777543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.81  E-value=1.2e-16  Score=139.22  Aligned_cols=321  Identities=14%  Similarity=0.020  Sum_probs=230.4

Q ss_pred             ChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          153 SLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQK  232 (630)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (630)
                      ++..+.-...+|..++..|++.+|+..|..|++.                .|....+++..|.+|..+|+-.-|+.-+.+
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~----------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~r   97 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEG----------------DPNNYQAIFRRATVYLAMGKSKAALQDLSR   97 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------------CchhHHHHHHHHHHHhhhcCCccchhhHHH
Confidence            3455666778999999999999999999999987                556678889999999999999999999999


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC-------HHHHHHHHHHHHHHhccc
Q 006812          233 CLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS-------VEVAHDRRLLGVIYSGLE  305 (630)
Q Consensus       233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g  305 (630)
                      ++++        .|+...+....|.++.++|.+++|+.-|...++..+.......       ......+......+...|
T Consensus        98 Vlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G  169 (504)
T KOG0624|consen   98 VLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG  169 (504)
T ss_pred             HHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence            9854        3666778888999999999999999999999875442100000       011122333455566788


Q ss_pred             cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccH
Q 006812          306 EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKF  385 (630)
Q Consensus       306 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~  385 (630)
                      ++..|+.+....+++      .|..+..+...+.+|...|+...|+.-++.+-++...+    ...++.++.+++..|+.
T Consensus       170 D~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn----Te~~ykis~L~Y~vgd~  239 (504)
T KOG0624|consen  170 DCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN----TEGHYKISQLLYTVGDA  239 (504)
T ss_pred             chhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc----hHHHHHHHHHHHhhhhH
Confidence            888888888887776      67778888888999999999999999888887765444    33778888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHH
Q 006812          386 ADAKRCLEIACGILDKKETISPEEVADAYSEI---------SMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSA  456 (630)
Q Consensus       386 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  456 (630)
                      +.++...++.+++...     |..-...|-.+         +.-....++|.++++..++.++..+..   .........
T Consensus       240 ~~sL~~iRECLKldpd-----HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r  311 (504)
T KOG0624|consen  240 ENSLKEIRECLKLDPD-----HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFR  311 (504)
T ss_pred             HHHHHHHHHHHccCcc-----hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeh
Confidence            8888888887776421     11111111111         222344556666666666655531110   111133445


Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          457 RIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      .+..++...|++.+|+....++++        ..|+.+.++...+.+|.....|+.|+.-|++|.+.
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~--------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLD--------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHh--------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            667777778888888888877776        45677778888888888888888888888888773

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.81  E-value=2.5e-15  Score=165.30  Aligned_cols=415  Identities=15%  Similarity=0.075  Sum_probs=293.0

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC
Q 006812          116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL  195 (630)
Q Consensus       116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  195 (630)
                      ...+..+...| ++.+|+..+..+         ++  ....+..+...+......|++..+..++... ....   ... 
T Consensus       345 ~raa~~~~~~g-~~~~Al~~a~~a---------~d--~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~---~~~-  407 (903)
T PRK04841        345 RAAAEAWLAQG-FPSEAIHHALAA---------GD--AQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEV---LLE-  407 (903)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHC---------CC--HHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHH---Hhc-
Confidence            33444444454 666665544432         11  1234455556677777888887766665432 1100   000 


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006812          196 GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEE-DSRELGVANRDLAEAFVAVLNFKEALPFGLK  274 (630)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  274 (630)
                             .+   ......+.++...|++++|..++..+.+........ +..........+|.++...|++++|..++++
T Consensus       408 -------~~---~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  477 (903)
T PRK04841        408 -------NP---RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAEL  477 (903)
T ss_pred             -------Cc---chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                   11   123457788889999999999999887654321101 1122345566688999999999999999999


Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812          275 ALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTL  354 (630)
Q Consensus       275 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  354 (630)
                      ++.....   .+......+...+|.++...|++++|...+++++......+.......++..+|.++...|++++|...+
T Consensus       478 al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~  554 (903)
T PRK04841        478 ALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ  554 (903)
T ss_pred             HHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9875332   1222345567789999999999999999999999998888777666778899999999999999999999


Q ss_pred             HHHHHHhhhcc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812          355 KGVVRQTEKES----ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA  430 (630)
Q Consensus       355 ~~~l~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  430 (630)
                      ++++.......    ......+..+|.++...|++++|...+.+++.+.....   +.....++..+|.++...|++++|
T Consensus       555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A  631 (903)
T PRK04841        555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNA  631 (903)
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHH
Confidence            99998765432    22344566789999999999999999999998876432   223456778899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCchh-HHH-HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812          431 ISLLKRTLALLEKLPQAQHSEG-SVS-ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD  508 (630)
Q Consensus       431 ~~~~~~al~~~~~~~~~~~~~~-~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  508 (630)
                      ...+.++..+......  .... ... ......+...|+.+.|..++.......   .+ ........+..++.++...|
T Consensus       632 ~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~-~~~~~~~~~~~~a~~~~~~g  705 (903)
T PRK04841        632 RRYLNRLENLLGNGRY--HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FA-NNHFLQGQWRNIARAQILLG  705 (903)
T ss_pred             HHHHHHHHHHHhcccc--cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Cc-cchhHHHHHHHHHHHHHHcC
Confidence            9999999887655321  1111 111 112344556899999988876654310   01 11112233567899999999


Q ss_pred             ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812          509 RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       509 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                      ++++|...+++++...... + .....+.++..+|.++...|+.++|...+.+|+++....|.
T Consensus       706 ~~~~A~~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        706 QFDEAEIILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence            9999999999999986543 2 23466678899999999999999999999999999877665

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.81  E-value=6.7e-16  Score=159.86  Aligned_cols=388  Identities=13%  Similarity=0.042  Sum_probs=267.9

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCC
Q 006812          117 KIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG  196 (630)
Q Consensus       117 ~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  196 (630)
                      .+..++...| +.++|+.++++++  .     +.   +.....+..+|.++...|++++|++.|+++++.         +
T Consensus        73 dll~l~~~~G-~~~~A~~~~eka~--~-----p~---n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~---------d  132 (822)
T PRK14574         73 DWLQIAGWAG-RDQEVIDVYERYQ--S-----SM---NISSRGLASAARAYRNEKRWDQALALWQSSLKK---------D  132 (822)
T ss_pred             HHHHHHHHcC-CcHHHHHHHHHhc--c-----CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------C
Confidence            5666666667 9999999999987  1     11   122344455688999999999999999999887         2


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006812          197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKAL  276 (630)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  276 (630)
                      |+.       ..++..++..+...++.++|+..+++++...        |.... +..++.++...++..+|+..+++++
T Consensus       133 P~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~~-~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        133 PTN-------PDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQN-YMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             CCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchHH-HHHHHHHHHhcchHHHHHHHHHHHH
Confidence            222       3445577889999999999999988877432        32222 3445566656777777999999988


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHHHhccc---------------------------------------------cHHHHH
Q 006812          277 EIHKKGLGHNSVEVAHDRRLLGVIYSGLE---------------------------------------------EHQKAL  311 (630)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------------------------------~~~~A~  311 (630)
                      +..+.     .+..   +..+..+....|                                             .+..+-
T Consensus       197 ~~~P~-----n~e~---~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d  268 (822)
T PRK14574        197 RLAPT-----SEEV---LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD  268 (822)
T ss_pred             HhCCC-----CHHH---HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            76442     1111   111111111111                                             122222


Q ss_pred             HHHHHHHHHHHHcCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH
Q 006812          312 EQNELSQKVLKTWGLSS----ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD  387 (630)
Q Consensus       312 ~~~~~a~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~  387 (630)
                      ..+...-.++...+..|    ....+....-.++...|++.+++..|+.......+.+   ..+....|..|...++.++
T Consensus       269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P---~y~~~a~adayl~~~~P~k  345 (822)
T PRK14574        269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP---DYARRWAASAYIDRRLPEK  345 (822)
T ss_pred             HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC---HHHHHHHHHHHHhcCCcHH
Confidence            22222222333333333    3345556666777889999999999988765332223   3377788999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-C--C----CCCCch-hHHHHHHH
Q 006812          388 AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK-L--P----QAQHSE-GSVSARIG  459 (630)
Q Consensus       388 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~----~~~~~~-~~~~~~la  459 (630)
                      |+..|..++.-..... .. +........|-..|...+++++|..++++..+..+- .  .    ...+++ ......++
T Consensus       346 A~~l~~~~~~~~~~~~-~~-~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a  423 (822)
T PRK14574        346 AAPILSSLYYSDGKTF-RN-SDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV  423 (822)
T ss_pred             HHHHHHHHhhcccccc-CC-CcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence            9999998765332111 01 122233456778899999999999999998763220 0  0    112223 45667889


Q ss_pred             HHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006812          460 WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEAC  539 (630)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  539 (630)
                      .++...|++.+|++.+++.+.        ..|........+|.++...|.+.+|...++.+..        .+|+...+.
T Consensus       424 ~~~~~~gdl~~Ae~~le~l~~--------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--------l~P~~~~~~  487 (822)
T PRK14574        424 QSLVALNDLPTAQKKLEDLSS--------TAPANQNLRIALASIYLARDLPRKAEQELKAVES--------LAPRSLILE  487 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------hCCccHHHH
Confidence            999999999999999999987        3477778899999999999999999999988877        457777899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          540 QNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       540 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      ..++.++..+|++++|.......++.++..
T Consensus       488 ~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~  517 (822)
T PRK14574        488 RAQAETAMALQEWHQMELLTDDVISRSPED  517 (822)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence            999999999999999999998888776553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=9.7e-16  Score=142.19  Aligned_cols=376  Identities=15%  Similarity=0.093  Sum_probs=265.1

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      +|.....|.+...+|...| +|++|++-..+..++.          |..+..|..+|..+.-+|+|++|+..|.+.++..
T Consensus        32 ~p~nhvlySnrsaa~a~~~-~~~~al~da~k~~~l~----------p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d  100 (539)
T KOG0548|consen   32 SPTNHVLYSNRSAAYASLG-SYEKALKDATKTRRLN----------PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD  100 (539)
T ss_pred             CCCccchhcchHHHHHHHh-hHHHHHHHHHHHHhcC----------CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC
Confidence            4556667777777888888 9999999888877664          4467788999999999999999999999998871


Q ss_pred             hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc-----------------C----CHHHHHHHHHHHHHHHHHH------
Q 006812          188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM-----------------G----RREEALEHLQKCLEIKELI------  240 (630)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------g----~~~~A~~~~~~al~~~~~~------  240 (630)
                               |       .....+..++.++...                 +    ++-..-..|...++..+..      
T Consensus       101 ---------~-------~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen  101 ---------P-------SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             ---------C-------chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence                     1       1222222333333111                 0    0000011111111111000      


Q ss_pred             --------------h-------------------cc------------ch------HHHHHHHHHHHHHHHHhcCHHHHH
Q 006812          241 --------------L-------------------EE------------DS------RELGVANRDLAEAFVAVLNFKEAL  269 (630)
Q Consensus       241 --------------~-------------------~~------------~~------~~~~~~~~~la~~~~~~g~~~~A~  269 (630)
                                    .                   .+            +.      ...+.....+|.......++..|+
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~  244 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI  244 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence                          0                   00            00      113556778999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHH
Q 006812          270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFE  348 (630)
Q Consensus       270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~  348 (630)
                      +.|.+++++...         ...+.+.+-+|...|.+.+.+.....+++.-...... .....+...+|..|...++++
T Consensus       245 q~y~~a~el~~~---------it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~  315 (539)
T KOG0548|consen  245 QHYAKALELATD---------ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE  315 (539)
T ss_pred             HHHHHHHhHhhh---------hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence            999999998632         3457788999999999999888888777653332222 334556666888999999999


Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812          349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE  428 (630)
Q Consensus       349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  428 (630)
                      .|+.+|++++.....            ..+.......+++....+...-+.        |..+.--..-|..++..|+|.
T Consensus       316 ~ai~~~~kaLte~Rt------------~~~ls~lk~~Ek~~k~~e~~a~~~--------pe~A~e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  316 GAIKYYQKALTEHRT------------PDLLSKLKEAEKALKEAERKAYIN--------PEKAEEEREKGNEAFKKGDYP  375 (539)
T ss_pred             HHHHHHHHHhhhhcC------------HHHHHHHHHHHHHHHHHHHHHhhC--------hhHHHHHHHHHHHHHhccCHH
Confidence            999999998864433            233334444555555444332222        455666666799999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812          429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD  508 (630)
Q Consensus       429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  508 (630)
                      .|+..|.+++..       ++.+...|.+.|-+|.++|++..|+...+.+++        .+|.....|..-|.++..+.
T Consensus       376 ~Av~~YteAIkr-------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--------L~p~~~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  376 EAVKHYTEAIKR-------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--------LDPNFIKAYLRKGAALRAMK  440 (539)
T ss_pred             HHHHHHHHHHhc-------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cCchHHHHHHHHHHHHHHHH
Confidence            999999998874       233467889999999999999999999999998        36888899999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812          509 RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       509 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  562 (630)
                      +|++|.+.|+++++        .+|....+...+..++..+.......+.++++
T Consensus       441 ~ydkAleay~eale--------~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~  486 (539)
T KOG0548|consen  441 EYDKALEAYQEALE--------LDPSNAEAIDGYRRCVEAQRGDETPEETKRRA  486 (539)
T ss_pred             HHHHHHHHHHHHHh--------cCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence            99999999999998        56777778888888887654444445555553

>TIGR00540 hemY_coli hemY protein

Probab=99.79  E-value=5.8e-16  Score=151.84  Aligned_cols=316  Identities=13%  Similarity=0.002  Sum_probs=224.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH
Q 006812          211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV  290 (630)
Q Consensus       211 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  290 (630)
                      ..-|......|+++.|.+.+.++.+.        .|.....+...|.++...|+++.|..++.++.+..+.     +.  
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-----~~--  152 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-----DN--  152 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----Cc--
Confidence            45788888999999999999887643        2222455667799999999999999999998764332     11  


Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL  370 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  370 (630)
                      ..+....+.++...|++++|+..++...+.      .|....++..++.++...|++++|.+.+.+..+....++.....
T Consensus       153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~  226 (409)
T TIGR00540       153 ILVEIARTRILLAQNELHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD  226 (409)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            112333488999999999999998877775      57777889999999999999999999999988764333332222


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      .......-+...+..+++...+..+........    +.....+..++..+...|++++|.+.++++++...     +..
T Consensus       227 l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~----~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-----d~~  297 (409)
T TIGR00540       227 LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR----RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-----DDR  297 (409)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH----hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-----Ccc
Confidence            222222222333444444455555544332111    23457888899999999999999999999998522     221


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG--YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                      ...............++.+.+++.++++++        .+|+..  ..+..+|.++.+.|++++|.++|+++..+.    
T Consensus       298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--------~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~----  365 (409)
T TIGR00540       298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAK--------NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK----  365 (409)
T ss_pred             cchhHHHHHhhhcCCCChHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh----
Confidence            111112223333445788888888888887        345555  788899999999999999999999543322    


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812          529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                        .+|+.. .+..+|.++...|+.++|.++|++++...-..++
T Consensus       366 --~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~  405 (409)
T TIGR00540       366 --EQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD  405 (409)
T ss_pred             --cCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence              234443 3569999999999999999999999887666544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=5.7e-18  Score=146.32  Aligned_cols=283  Identities=13%  Similarity=0.073  Sum_probs=226.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812          216 VKTAMGRREEALEHLQKCLEIKELILEEDSREL--GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD  293 (630)
Q Consensus       216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  293 (630)
                      +++..++...|-......+++........+...  -.--..+|.||...|-+.+|.+.++.+++..+         ...+
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~---------~~dT  258 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP---------HPDT  258 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC---------chhH
Confidence            455566666666666665555443322222222  22335799999999999999999999987543         2356


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812          294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI  373 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~  373 (630)
                      +..|+.+|....+...|+..+.+.++.      -|..+..+..++.++..++++++|.++|+.+++..+.+    ..+..
T Consensus       259 fllLskvY~ridQP~~AL~~~~~gld~------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n----vEaiA  328 (478)
T KOG1129|consen  259 FLLLSKVYQRIDQPERALLVIGEGLDS------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN----VEAIA  328 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhhhc------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc----ceeee
Confidence            778899999999999999998876664      58888899999999999999999999999999865444    34566


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS  453 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  453 (630)
                      .+|.-|+..++.+-|..+|++.+++..        .....+.++|.+++..++++-++..|++++....+.    ...+.
T Consensus       329 cia~~yfY~~~PE~AlryYRRiLqmG~--------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~----~~aaD  396 (478)
T KOG1129|consen  329 CIAVGYFYDNNPEMALRYYRRILQMGA--------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP----GQAAD  396 (478)
T ss_pred             eeeeccccCCChHHHHHHHHHHHHhcC--------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc----chhhh
Confidence            677888899999999999999988762        344789999999999999999999999999864322    22367


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      +|+++|.+....|++.-|..+|+-++.        .+++...++++||.+-.+.|+.++|..++..|..        ..|
T Consensus       397 vWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--------~~P  460 (478)
T KOG1129|consen  397 VWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS--------VMP  460 (478)
T ss_pred             hhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--------hCc
Confidence            999999999999999999999999987        6678889999999999999999999999999877        446


Q ss_pred             HHHHHHHHHHHH
Q 006812          534 DSIEACQNLSKA  545 (630)
Q Consensus       534 ~~~~~~~~la~~  545 (630)
                      +..+..++++.+
T Consensus       461 ~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  461 DMAEVTTNLQFM  472 (478)
T ss_pred             cccccccceeEE
Confidence            666666666543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.79  E-value=1.4e-15  Score=133.48  Aligned_cols=340  Identities=18%  Similarity=0.123  Sum_probs=272.7

Q ss_pred             HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      ..-|.-++...++++|+..+.+.+.-.....+.             ...+-.+..+...+|.|++++.+--..++.+...
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R-------------f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~   76 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGR-------------FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL   76 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHH-------------HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            445666778888999999999888765544333             2566678889999999999998877777776665


Q ss_pred             hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                        ++......++.+++..+...-++.+++.+.+..+.+-..-.+   ..-......++..+..++.+++++++|+.|+++
T Consensus        77 --~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~  151 (518)
T KOG1941|consen   77 --EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRY  151 (518)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence              555666889999999999999999999988877764321111   122345566899999999999999999999999


Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc------chHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE------SETRALVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       321 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                      ....++......++..+|.++....++++|.-+..++.++....      ......+++.|+..+..+|...+|.++.++
T Consensus       152 A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E  231 (518)
T KOG1941|consen  152 AHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE  231 (518)
T ss_pred             hhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            99999888888999999999999999999999999998876542      233466788999999999999999999999


Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChh-----
Q 006812          395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVP-----  469 (630)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-----  469 (630)
                      +.++.-..+  +.+..+.....+|.+|...|+.+.|..-|+.|..+.... ++....+.++...+.++....-..     
T Consensus       232 a~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~C  308 (518)
T KOG1941|consen  232 AMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNC  308 (518)
T ss_pred             HHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            999887665  557788999999999999999999999999999988777 444445667777777776544444     


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          470 QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       470 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      .|+++-++++++..++ | ....+......++.+|..+|.-++-...+.++-+.
T Consensus       309 rale~n~r~levA~~I-G-~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  309 RALEFNTRLLEVASSI-G-AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             chhHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            4999999999988776 2 33456677889999999999988877777776553

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=2.8e-17  Score=142.15  Aligned_cols=282  Identities=16%  Similarity=0.103  Sum_probs=229.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH--HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV--EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      |.+..+++.  .+|+..++...|-......+++........+.  ....--..+|.+|..+|-+.+|.+.++.++.-   
T Consensus       178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---  252 (478)
T KOG1129|consen  178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---  252 (478)
T ss_pred             hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---
Confidence            444555543  45667778888887777666655432222221  22333467999999999999999999987773   


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhc
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE  403 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  403 (630)
                          ...+.++..++.+|.+..+...|+..+.+.++.++.+    ...+..++.++..++++++|.++|+.+++..    
T Consensus       253 ----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~----VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~----  320 (478)
T KOG1129|consen  253 ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD----VTYLLGQARIHEAMEQQEDALQLYKLVLKLH----  320 (478)
T ss_pred             ----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch----hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC----
Confidence                4457788899999999999999999999999866554    4577889999999999999999999988764    


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812          404 TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK  483 (630)
Q Consensus       404 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  483 (630)
                          +...++.-.+|.-|+..++.+-|+.+|++.+.+     |...|  ..+.++|.+++..++++-++..|++++....
T Consensus       321 ----~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~sp--eLf~NigLCC~yaqQ~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  321 ----PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSP--ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT  389 (478)
T ss_pred             ----CccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCCh--HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence                344566667888899999999999999999997     54444  4889999999999999999999999998542


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                           +....+++|+++|.+....|++.-|..+|+-++.        ++++..+++++||.+-.+.|+.++|..++..|-
T Consensus       390 -----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  390 -----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             -----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence                 3456678999999999999999999999999988        778888999999999999999999999999987


Q ss_pred             HHHHH
Q 006812          564 DAWES  568 (630)
Q Consensus       564 ~~~~~  568 (630)
                      ...+.
T Consensus       457 s~~P~  461 (478)
T KOG1129|consen  457 SVMPD  461 (478)
T ss_pred             hhCcc
Confidence            66544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.77  E-value=1.4e-14  Score=126.45  Aligned_cols=321  Identities=14%  Similarity=0.077  Sum_probs=243.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      .++....-.+.+|..++..| .+..|+..|..|++..          |..-.+++..|.+|..+|+-.-|+..+.+++++
T Consensus        33 ~~~advekhlElGk~lla~~-Q~sDALt~yHaAve~d----------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel  101 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARG-QLSDALTHYHAAVEGD----------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL  101 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHcCC----------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence            45666777889999999999 9999999999998754          345667889999999999999999999999998


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc-c------hHHHHHHHHHHHHHH
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEE-D------SRELGVANRDLAEAF  259 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~------~~~~~~~~~~la~~~  259 (630)
                                      .|....+....|.++.++|++++|+.-|.++++-....... +      .......+......+
T Consensus       102 ----------------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~  165 (504)
T KOG0624|consen  102 ----------------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA  165 (504)
T ss_pred             ----------------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence                            55566777889999999999999999999988543211000 0      001122333445556


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812          260 VAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN  339 (630)
Q Consensus       260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  339 (630)
                      ...|++..|+++....+++.        +..+..+...+.+|...|+...|+.-+..+-++      ..+....++.++.
T Consensus       166 ~~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL------s~DnTe~~ykis~  231 (504)
T KOG0624|consen  166 SGSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL------SQDNTEGHYKISQ  231 (504)
T ss_pred             hcCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------cccchHHHHHHHH
Confidence            77899999999999988853        345667778899999999999999988877776      5667888999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHH---------HHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812          340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISM---------GKALCNQEKFADAKRCLEIACGILDKKETISPEEV  410 (630)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l---------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  410 (630)
                      +++..|+.+.++...+++++..+.+..-.+ .|-.+         +.-....++|.++++..++.++....    ..+..
T Consensus       232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~-~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~----~~~ir  306 (504)
T KOG0624|consen  232 LLYTVGDAENSLKEIRECLKLDPDHKLCFP-FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE----ETMIR  306 (504)
T ss_pred             HHHhhhhHHHHHHHHHHHHccCcchhhHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc----cccee
Confidence            999999999999999999997665432111 12222         22334455566666555554443211    11223


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ......+..++..-|++.+|+..+.+++++       ++.++.++...+.+|.-...|+.|+.-|++|.+
T Consensus       307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDI-------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             eeeeheeeecccccCCHHHHHHHHHHHHhc-------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            345556778889999999999999999885       334578999999999999999999999999998

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.76  E-value=2.8e-14  Score=138.08  Aligned_cols=386  Identities=17%  Similarity=0.123  Sum_probs=237.7

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .+..|..+.......|+|..+.+.|++++...                -.....|+.++.+|...|....|+...++.+.
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~----------------~~~~e~w~~~als~saag~~s~Av~ll~~~~~  385 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS----------------FGEHERWYQLALSYSAAGSDSKAVNLLRESLK  385 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----------------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence            34456677788888999999999999988762                22346788999999999999999999888774


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc----------
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE----------  305 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------  305 (630)
                      ..+     ..++....+..-..++...+.+++++.+..+++......   ........+..+|.+|..+-          
T Consensus       386 ~~~-----~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~  457 (799)
T KOG4162|consen  386 KSE-----QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERD  457 (799)
T ss_pred             ccc-----CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHH
Confidence            432     122233444445566778899999999999999966432   23344566777777775432          


Q ss_pred             -cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812          306 -EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK  384 (630)
Q Consensus       306 -~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~  384 (630)
                       ...+++..+++|++.      ++.+..+.+.++.-|..+++.+.|.++.+++++..+.+.   +.+|..++.++...++
T Consensus       458 ~~h~kslqale~av~~------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~---~~~whLLALvlSa~kr  528 (799)
T KOG4162|consen  458 ALHKKSLQALEEAVQF------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS---AKAWHLLALVLSAQKR  528 (799)
T ss_pred             HHHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHhhhhh
Confidence             234455555555554      566668889999999999999999999999999855444   4489999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCc------------HHHHHHHHHH-----------------------HHHHHHcCCHHH
Q 006812          385 FADAKRCLEIACGILDKKETISP------------EEVADAYSEI-----------------------SMQYESMNEFET  429 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~l-----------------------a~~~~~~g~~~~  429 (630)
                      +.+|+...+.++.-...+.+..+            .....+...+                       +.+....++..+
T Consensus       529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~  608 (799)
T KOG4162|consen  529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD  608 (799)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence            99999999998887655221100            0000000000                       001111222333


Q ss_pred             HHHHHHHHHHHHHhC----------------CCCCCch---hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          430 AISLLKRTLALLEKL----------------PQAQHSE---GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       430 A~~~~~~al~~~~~~----------------~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      |...+.++..+....                .++.++.   ...|...+..+...++.++|..++.++-.+        .
T Consensus       609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~  680 (799)
T KOG4162|consen  609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------D  680 (799)
T ss_pred             cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------c
Confidence            333333333322110                0011110   123345556666666666666666666553        2


Q ss_pred             ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHH---
Q 006812          491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIE--FQQRAIDA---  565 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---  565 (630)
                      |..+..|+..|.++...|+.++|.+.|..|+.+        +|+...+...+|.++...|+..-|..  ++..++++   
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~  752 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL  752 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence            555556666666666666666666666666652        23333555566666666666555555  56666543   


Q ss_pred             ----HHHcCC--CchhHHHHHHHHHHHHHHH
Q 006812          566 ----WESHGP--SAQDELREARRLLEQLKIK  590 (630)
Q Consensus       566 ----~~~~~~--~~~~~~~~A~~~~~~~~~~  590 (630)
                          |..+|.  ...|+.++|...|....+.
T Consensus       753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence                222222  1345555566666554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=3.1e-18  Score=159.64  Aligned_cols=266  Identities=18%  Similarity=0.206  Sum_probs=110.2

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 006812          254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRA  333 (630)
Q Consensus       254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  333 (630)
                      .+|.++...|++++|++.+.+.+....      .+.....+..+|.+....++++.|+..|++.+..      ++.....
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~------~~~~~~~   80 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS------DKANPQD   80 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccc------ccccccc
Confidence            569999999999999999976654321      1223355667899999999999999999988765      3334555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812          334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA  413 (630)
Q Consensus       334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  413 (630)
                      +..++.+ ...+++++|+.++.++.+..+.     ...+..+..++...++++++...++.+....      ..+.....
T Consensus        81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~  148 (280)
T PF13429_consen   81 YERLIQL-LQDGDPEEALKLAEKAYERDGD-----PRYLLSALQLYYRLGDYDEAEELLEKLEELP------AAPDSARF  148 (280)
T ss_dssp             -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------T-HHH
T ss_pred             ccccccc-cccccccccccccccccccccc-----cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------CCCCCHHH
Confidence            6667777 7999999999999888764321     2355667778899999999999999876422      12355678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812          414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV  493 (630)
Q Consensus       414 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  493 (630)
                      +..+|.++...|++++|+..|+++++.     .++  +..+...++.++...|+++++.+.+.......     +.+|. 
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~-  215 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALEL-----DPD--DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD-  215 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH-
Confidence            899999999999999999999999997     222  23477889999999999999888887776632     23343 


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                        .+..+|.++..+|++++|+.+|++++.        .+|+...++..+|.++...|+.++|..++++++...
T Consensus       216 --~~~~la~~~~~lg~~~~Al~~~~~~~~--------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  216 --LWDALAAAYLQLGRYEEALEYLEKALK--------LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             --HCHHHHHHHHHHT-HHHHHHHHHHHHH--------HSTT-HHHHHHHHHHHT-------------------
T ss_pred             --HHHHHHHHhcccccccccccccccccc--------cccccccccccccccccccccccccccccccccccc
Confidence              567889999999999999999999988        446666889999999999999999999999988654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.75  E-value=1.7e-17  Score=154.74  Aligned_cols=265  Identities=20%  Similarity=0.146  Sum_probs=111.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 006812          212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA  291 (630)
Q Consensus       212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  291 (630)
                      .+|.++...|++++|++.+.+.+...      ..+.....+..+|.+....++++.|+..|++++.....        ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--------~~   78 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--------NP   78 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc--------cc
Confidence            57999999999999999997654321      12344577888999999999999999999999875432        22


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV  371 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~  371 (630)
                      ..+..++.+ ...+++++|+.+++++.+.       ......+.....++...++++++...++++.....  .+.....
T Consensus        79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~  148 (280)
T PF13429_consen   79 QDYERLIQL-LQDGDPEEALKLAEKAYER-------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--APDSARF  148 (280)
T ss_dssp             -----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHH
T ss_pred             ccccccccc-ccccccccccccccccccc-------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCCHHH
Confidence            345566666 6899999999988876553       12234455667788999999999999999775321  2233668


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812          372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE  451 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  451 (630)
                      +..+|.++...|+.++|+.+++++++..        |+...+...++.++...|+++++.+.+.......+.       +
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-------~  213 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-------D  213 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-------S
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-------H
Confidence            9999999999999999999999999987        566678888999999999999988888777665321       1


Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      ...+..+|.++...|++++|+.+|++++.        .+|....++..+|.++...|+.++|..++++++..
T Consensus       214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~--------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  214 PDLWDALAAAYLQLGRYEEALEYLEKALK--------LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             CCHCHHHHHHHHHHT-HHHHHHHHHHHHH--------HSTT-HHHHHHHHHHHT------------------
T ss_pred             HHHHHHHHHHhcccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence            23678899999999999999999999987        35667778899999999999999999999998764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.75  E-value=6.1e-14  Score=154.34  Aligned_cols=394  Identities=15%  Similarity=0.028  Sum_probs=276.4

Q ss_pred             cccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHH
Q 006812          104 SSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKA  183 (630)
Q Consensus       104 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (630)
                      ...+.+..+......+......| ++..+..+.... .....   ..  ++.   .....+.++...|++++|...+.++
T Consensus       366 ~a~d~~~~~~ll~~~a~~l~~~g-~~~~l~~~l~~l-p~~~~---~~--~~~---l~~~~a~~~~~~g~~~~a~~~l~~a  435 (903)
T PRK04841        366 AAGDAQLLRDILLQHGWSLFNQG-ELSLLEECLNAL-PWEVL---LE--NPR---LVLLQAWLAQSQHRYSEVNTLLARA  435 (903)
T ss_pred             HCCCHHHHHHHHHHhHHHHHhcC-ChHHHHHHHHhC-CHHHH---hc--Ccc---hHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33344444455556666666666 777665555432 11101   11  112   2345677888999999999999988


Q ss_pred             HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Q 006812          184 NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL  263 (630)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (630)
                      ...........       ...........++.++...|++++|..+++++++....   .+......+...+|.++...|
T Consensus       436 ~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G  505 (903)
T PRK04841        436 EQELKDRNIEL-------DGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKG  505 (903)
T ss_pred             HHhccccCccc-------chhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcC
Confidence            76633211000       01123345556889999999999999999999864211   222234566788999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHH
Q 006812          264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS--SELLRAEIDAANMQ  341 (630)
Q Consensus       264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~  341 (630)
                      ++++|...+++++.......  .......++.++|.++...|++++|..++++++.+....+..  +.....+..+|.++
T Consensus       506 ~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  583 (903)
T PRK04841        506 ELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL  583 (903)
T ss_pred             CHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            99999999999999877542  223345577889999999999999999999999998876543  33445567789999


Q ss_pred             HHcCCHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH-HHHHHHHHH
Q 006812          342 IALGKFEEAINTLKGVVRQTEKE-SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV-ADAYSEISM  419 (630)
Q Consensus       342 ~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~  419 (630)
                      ...|++++|...+.+++...... .......+..++.++...|++++|...+.++..+.....  .+... .........
T Consensus       584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~  661 (903)
T PRK04841        584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--YHSDWIANADKVRLI  661 (903)
T ss_pred             HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccHhHhhHHHHHHHH
Confidence            99999999999999998876543 223456777899999999999999999999988765432  11111 111111234


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812          420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN  499 (630)
Q Consensus       420 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  499 (630)
                      .+...|+.+.|..++......   ...........+..++.++...|++++|...+++++...... + .....+.++..
T Consensus       662 ~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~-g-~~~~~a~~~~~  736 (903)
T PRK04841        662 YWQMTGDKEAAANWLRQAPKP---EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL-R-LMSDLNRNLIL  736 (903)
T ss_pred             HHHHCCCHHHHHHHHHhcCCC---CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C-chHHHHHHHHH
Confidence            455688999998887664331   101111112235678999999999999999999999976553 2 33466778889


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812          500 LGAAYLELDRPQSAAQVFAFAKDIMDV  526 (630)
Q Consensus       500 l~~~~~~~g~~~~A~~~~~~al~~~~~  526 (630)
                      +|.++...|+.++|...+.+++++...
T Consensus       737 la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        737 LNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999998743

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.75  E-value=8.5e-15  Score=142.76  Aligned_cols=301  Identities=15%  Similarity=0.083  Sum_probs=215.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812          210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE  289 (630)
Q Consensus       210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  289 (630)
                      .+.-|......|+|++|.+...++-+.      .+.|  ...+...+.+....|+++.|..++.++.+..+.     . .
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-----~-~  152 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADH------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELADN-----D-Q  152 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhc------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-----c-h
Confidence            345677777789999999776654321      1223  233445567779999999999999999874332     1 1


Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812          290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                      . ......+.++...|++++|+..+++..+.      .|....++..++.+|...|++++|+..+.+..+....++....
T Consensus       153 ~-~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        153 L-PVEITRVRIQLARNENHAARHGVDKLLEV------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             H-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            1 12223488999999999999999887775      6788889999999999999999999999998876544333222


Q ss_pred             ----HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812          370 ----LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP  445 (630)
Q Consensus       370 ----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  445 (630)
                          .++..+........+-+...++++.    ....    .+........++..+...|+.++|...++++++.     
T Consensus       226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~----lp~~----~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-----  292 (398)
T PRK10747        226 MLEQQAWIGLMDQAMADQGSEGLKRWWKN----QSRK----TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-----  292 (398)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHh----CCHH----HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence                2333322222222222222222222    2111    1344577788999999999999999999998872     


Q ss_pred             CCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                       +.++  ......+.  ...++++++++..++.++        .+|+.+..+..+|.++...|++++|.++|+++++.  
T Consensus       293 -~~~~--~l~~l~~~--l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--  357 (398)
T PRK10747        293 -QYDE--RLVLLIPR--LKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--  357 (398)
T ss_pred             -CCCH--HHHHHHhh--ccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence             2222  12222222  245899999999998887        67888889999999999999999999999999984  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       526 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                            .|+.. .+..++.++...|+.++|.++|++++...
T Consensus       358 ------~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        358 ------RPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             ------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence                  35543 56789999999999999999999998764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.75  E-value=1.6e-14  Score=127.07  Aligned_cols=344  Identities=16%  Similarity=0.162  Sum_probs=268.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      .-.+..|..++... ++++|+..+.+.+....+.       ......+..+..+...+|.|++++.+--..++.+....+
T Consensus         7 k~q~~~g~~Ly~s~-~~~~al~~w~~~L~~l~~~-------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d   78 (518)
T KOG1941|consen    7 KKQIEKGLQLYQSN-QTEKALQVWTKVLEKLSDL-------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED   78 (518)
T ss_pred             HHHHHHHHhHhcCc-hHHHHHHHHHHHHHHHHHH-------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888 9999999999998877554       234456667788899999999999888777777766654


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG  272 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (630)
                      ..          ....++.+++..+....++.+++.+-+..+.+--...+   ..-......+|..+...+.++++++.|
T Consensus        79 s~----------~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesf  145 (518)
T KOG1941|consen   79 SD----------FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESF  145 (518)
T ss_pred             HH----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHH
Confidence            33          55678889999999999999999887776643211110   112355667899999999999999999


Q ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC----hhHHHHHHHHHHHHHHcCCHH
Q 006812          273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS----SELLRAEIDAANMQIALGKFE  348 (630)
Q Consensus       273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~  348 (630)
                      ++|+++.....  +......++..||.+|....++++|+-+..+|.++.+..+..    .....+++.++..+..+|..-
T Consensus       146 e~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg  223 (518)
T KOG1941|consen  146 EKALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG  223 (518)
T ss_pred             HHHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence            99999987642  333445678899999999999999999999999999988744    234567888999999999999


Q ss_pred             HHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCC
Q 006812          349 EAINTLKGVVRQTEK--ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNE  426 (630)
Q Consensus       349 ~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  426 (630)
                      .|.++.+++.++.-.  +....+.....+|.+|...|+.+.|..-|+.|..+....+  +......++...+.++....-
T Consensus       224 dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g--drmgqv~al~g~Akc~~~~r~  301 (518)
T KOG1941|consen  224 DAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG--DRMGQVEALDGAAKCLETLRL  301 (518)
T ss_pred             cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHH
Confidence            999999999887654  3456688888999999999999999999999998876654  233445666667776665544


Q ss_pred             HHH-----HHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812          427 FET-----AISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL  482 (630)
Q Consensus       427 ~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (630)
                      ..+     |+++-.+.+++...+ |..+....+...++.+|..+|.-++-...+.++-+..
T Consensus       302 ~~k~~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  302 QNKICNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV  361 (518)
T ss_pred             hhcccccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            444     999999999998888 5555556677899999999999888888777766543

>TIGR00540 hemY_coli hemY protein

Probab=99.74  E-value=6.5e-15  Score=144.50  Aligned_cols=313  Identities=12%  Similarity=0.059  Sum_probs=220.6

Q ss_pred             HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE  238 (630)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  238 (630)
                      ....-|.+....|+++.|.+.+.++.+.                .+.....+...|.+...+|+++.|..++.++.+.. 
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-  148 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADH----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-  148 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            3456788888999999999999887665                11112345567999999999999999999987432 


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 006812          239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQ  318 (630)
Q Consensus       239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  318 (630)
                          ++..  ..+....+.++...|++++|...+++.++..+     ++   ..++..++.++...|++++|.+.+.+..
T Consensus       149 ----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P-----~~---~~~l~ll~~~~~~~~d~~~a~~~l~~l~  214 (409)
T TIGR00540       149 ----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMAP-----RH---KEVLKLAEEAYIRSGAWQALDDIIDNMA  214 (409)
T ss_pred             ----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                1211  12334458999999999999999999887543     33   3567788999999999999999988766


Q ss_pred             HHHHHcCCChhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812          319 KVLKTWGLSSELL-RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG  397 (630)
Q Consensus       319 ~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  397 (630)
                      +..   ..++... ........-....+..+++.+.+..+....+...+.....+..++..+...|++++|...++++++
T Consensus       215 k~~---~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       215 KAG---LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             HcC---CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence            541   1122222 222222222244455555666777777765544333466888999999999999999999999988


Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                      .....     +... ............++.+.+++.++++++.     .++.+.......+|+++.+.|++++|.++|++
T Consensus       292 ~~pd~-----~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~  360 (409)
T TIGR00540       292 KLGDD-----RAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN-----VDDKPKCCINRALGQLLMKHGEFIEAADAFKN  360 (409)
T ss_pred             hCCCc-----ccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            65321     1110 0122223334457888888888888764     23333235778999999999999999999995


Q ss_pred             --HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          478 --AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       478 --al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                        +++        .+|+... +..+|.++...|+.++|.++|++++....
T Consensus       361 a~a~~--------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       361 VAACK--------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             hHHhh--------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence              544        2344433 55999999999999999999999987643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.73  E-value=1.2e-14  Score=141.51  Aligned_cols=339  Identities=10%  Similarity=-0.038  Sum_probs=236.1

Q ss_pred             ChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          153 SLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQK  232 (630)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (630)
                      +|+.+.++..+|.++...|+.+.+...+.++.......         .    .........+.++...|++++|...+++
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~e~~~~~a~~~~~~g~~~~A~~~~~~   68 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR---------A----TERERAHVEALSAWIAGDLPKALALLEQ   68 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC---------C----CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35678889999999999999999988888877763221         1    1123455678899999999999999999


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHH
Q 006812          233 CLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALE  312 (630)
Q Consensus       233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  312 (630)
                      +++..     +++   ..++.. +..+...|++..+.....+++..    ..+.++.....+..+|.++...|++++|+.
T Consensus        69 ~l~~~-----P~~---~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  135 (355)
T cd05804          69 LLDDY-----PRD---LLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEE  135 (355)
T ss_pred             HHHHC-----CCc---HHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            98543     222   234443 66666666666666666665543    233566667778889999999999999999


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812          313 QNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL  392 (630)
Q Consensus       313 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  392 (630)
                      .+++++++      .|.....+..+|.++...|++++|+.++++++...+..+......+..++.++...|++++|...+
T Consensus       136 ~~~~al~~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         136 AARRALEL------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999987      566678889999999999999999999999998766544444557788999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh
Q 006812          393 EIACGILDKKETISPEEVADAYS--EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ  470 (630)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  470 (630)
                      ++++.....     .......+.  .+...+...|....+..+ +.......... +.+.........+.++...|+.++
T Consensus       210 ~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~  282 (355)
T cd05804         210 DTHIAPSAE-----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDA  282 (355)
T ss_pred             HHHhccccC-----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHH
Confidence            998543210     111111111  222333344433333322 22222211111 112122222468888899999999


Q ss_pred             HHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812          471 AIPYLESAAERLKESF-GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP  530 (630)
Q Consensus       471 A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  530 (630)
                      |...++.......... ..............+.++...|++++|.+.+..++.+.....|.
T Consensus       283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs  343 (355)
T cd05804         283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS  343 (355)
T ss_pred             HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            9999998877655410 01123345566788999999999999999999999988766554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=3.7e-14  Score=123.02  Aligned_cols=304  Identities=15%  Similarity=0.087  Sum_probs=231.8

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCC
Q 006812          117 KIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG  196 (630)
Q Consensus       117 ~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  196 (630)
                      -.|..+.-.. +.++|++.|...++..          +....+...||+.|.+.|..+.|+...+..+..          
T Consensus        40 v~GlNfLLs~-Q~dKAvdlF~e~l~~d----------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----------   98 (389)
T COG2956          40 VKGLNFLLSN-QPDKAVDLFLEMLQED----------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----------   98 (389)
T ss_pred             HhHHHHHhhc-CcchHHHHHHHHHhcC----------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------
Confidence            3455555555 8999999999988743          345677789999999999999999988766553          


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006812          197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKAL  276 (630)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  276 (630)
                      |+.+  ......++..||.-|...|-++.|+..|....+.-        .....++..|..+|....+|++|++..++..
T Consensus        99 pdlT--~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl~IYQ~treW~KAId~A~~L~  168 (389)
T COG2956          99 PDLT--FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLLNIYQATREWEKAIDVAERLV  168 (389)
T ss_pred             CCCc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            1111  22344678899999999999999999999866422        2235678899999999999999999999888


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          277 EIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG  356 (630)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  356 (630)
                      .+..+   +...+++..|..++..+....+.+.|+..+.+|++.      +|..+.+-+.+|.++...|+|+.|++.++.
T Consensus       169 k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~  239 (389)
T COG2956         169 KLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALER  239 (389)
T ss_pred             HcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHH
Confidence            77654   256689999999999999999999999999999987      788888999999999999999999999999


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR  436 (630)
Q Consensus       357 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  436 (630)
                      +++.   ++.....+...|..+|..+|+.++...++.++.+.....         .....++.+-....-.+.|..++.+
T Consensus       240 v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~---------~~~l~l~~lie~~~G~~~Aq~~l~~  307 (389)
T COG2956         240 VLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA---------DAELMLADLIELQEGIDAAQAYLTR  307 (389)
T ss_pred             HHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc---------cHHHHHHHHHHHhhChHHHHHHHHH
Confidence            8875   555667788899999999999999999999987765321         2334455555566667777777766


Q ss_pred             HHHHHHhCCCCCCchhHHHHHHHHHHHHc---CChhhHHHHHHHHHH
Q 006812          437 TLALLEKLPQAQHSEGSVSARIGWLLLLT---GKVPQAIPYLESAAE  480 (630)
Q Consensus       437 al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~  480 (630)
                      -+.-        +|.......+.......   |...+.+..++..+.
T Consensus       308 Ql~r--------~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         308 QLRR--------KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             HHhh--------CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            5552        45545555555554433   334455555555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=3.9e-13  Score=120.55  Aligned_cols=291  Identities=14%  Similarity=0.076  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812          246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG  325 (630)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  325 (630)
                      +.....+..+|.+++..|++.+|+..|+++.-+        +|.........|.+....|+++.-.......+.+     
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-----  295 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-----  295 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-----
Confidence            444678899999999999999999999998764        3344555556688888889888766555444433     


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812          326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  405 (630)
                       ......-++--+...+..+++..|+.+-++++...+.+.+    ++...|.++...|+.++|.-.|+.|..+.      
T Consensus       296 -~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~----alilKG~lL~~~~R~~~A~IaFR~Aq~La------  364 (564)
T KOG1174|consen  296 -VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE----ALILKGRLLIALERHTQAVIAFRTAQMLA------  364 (564)
T ss_pred             -hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch----HHHhccHHHHhccchHHHHHHHHHHHhcc------
Confidence             2223334455567778899999999999999997666655    88889999999999999999999998876      


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHH-HHHHH-cCChhhHHHHHHHHHHHHH
Q 006812          406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIG-WLLLL-TGKVPQAIPYLESAAERLK  483 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~  483 (630)
                        |....+|..|-.+|...|++.+|...-+.++..+...       +.++..+| .++.. -.--++|..++++++.   
T Consensus       365 --p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---  432 (564)
T KOG1174|consen  365 --PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---  432 (564)
T ss_pred             --hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHhhhc---
Confidence              6777899999999999999999999988888765432       23444454 33332 2234789999999998   


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                           -.|....+-..++.++...|.+++++..+++.+..+        ++. ..+..||.++...+.+++|+++|..|+
T Consensus       433 -----~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  433 -----INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------PDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL  498 (564)
T ss_pred             -----cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------ccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                 457778888899999999999999999999999854        333 478899999999999999999999999


Q ss_pred             HHHHHcCCCchhHHHHHHHHHHHHHHHhcCC
Q 006812          564 DAWESHGPSAQDELREARRLLEQLKIKASGA  594 (630)
Q Consensus       564 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  594 (630)
                      .+-+        +-+++.+-++++.+....+
T Consensus       499 r~dP--------~~~~sl~Gl~~lEK~~~~~  521 (564)
T KOG1174|consen  499 RQDP--------KSKRTLRGLRLLEKSDDES  521 (564)
T ss_pred             hcCc--------cchHHHHHHHHHHhccCCC
Confidence            7632        2234555566665554433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.72  E-value=1.3e-15  Score=125.86  Aligned_cols=204  Identities=15%  Similarity=0.107  Sum_probs=162.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcH
Q 006812          329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPE  408 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  408 (630)
                      ....+...+|.-|+..|++..|...++++++..++    ...++..++.+|...|+.+.|.+.|++|+++.        |
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--------p  100 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLA--------P  100 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--------C
Confidence            34567778888999999999999999999985443    35588899999999999999999999998876        5


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      ....+++|.|..++.+|++++|...|++|+.      .+..+. ..++.++|.|..+.|+++.|..+|++++++      
T Consensus       101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~------  168 (250)
T COG3063         101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL------  168 (250)
T ss_pred             CccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh------
Confidence            6678899999999999999999999999987      344433 568899999999999999999999999983      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                        +|........++...+..|+|..|..++++...        ..+-.++++.....+-...|+-+.|-.+=.+....+
T Consensus       169 --dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~--------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f  237 (250)
T COG3063         169 --DPQFPPALLELARLHYKAGDYAPARLYLERYQQ--------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF  237 (250)
T ss_pred             --CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh--------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence              344455677889999999999999988887655        223445667767778888888888877766655443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.72  E-value=8.2e-13  Score=125.55  Aligned_cols=408  Identities=15%  Similarity=0.127  Sum_probs=266.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      ..|+.+..+...|..+...| +-++|..+...+++..          +....||..+|.++....+|++|+.+|+.|+.+
T Consensus        36 k~~eHgeslAmkGL~L~~lg-~~~ea~~~vr~glr~d----------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~  104 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLG-KKEEAYELVRLGLRND----------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI  104 (700)
T ss_pred             hCCccchhHHhccchhhccc-chHHHHHHHHHHhccC----------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            34888888888999999999 9999999999988743          234569999999999999999999999999998


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK  266 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (630)
                                      .+....++..++....++++++-....-.+.++..        |..-..|...+..+.-.|++.
T Consensus       105 ----------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w~~~Avs~~L~g~y~  160 (700)
T KOG1156|consen  105 ----------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASWIGFAVAQHLLGEYK  160 (700)
T ss_pred             ----------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHH
Confidence                            23335678889999999999998887777766444        444677889999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC
Q 006812          267 EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK  346 (630)
Q Consensus       267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  346 (630)
                      .|....+...................+......+....|.+++|++.+..-..-      ..+........+.++..+++
T Consensus       161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~  234 (700)
T KOG1156|consen  161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQ  234 (700)
T ss_pred             HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhh
Confidence            999998887765542222222233444455566777778877777765532211      13344455567888999999


Q ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHH----------HHHHhh-c-------------------cHHHHH-------
Q 006812          347 FEEAINTLKGVVRQTEKESETRALVFISMG----------KALCNQ-E-------------------KFADAK-------  389 (630)
Q Consensus       347 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la----------~~~~~~-~-------------------~~~~A~-------  389 (630)
                      +++|...|...+...+++....-.....+|          .+|... .                   ++.+..       
T Consensus       235 lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~  314 (700)
T KOG1156|consen  235 LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPL  314 (700)
T ss_pred             HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence            999999998888766654332211111111          000000 0                   000000       


Q ss_pred             -------------H---------HHHHHHHHHHh-hcC------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812          390 -------------R---------CLEIACGILDK-KET------------ISPEEVADAYSEISMQYESMNEFETAISLL  434 (630)
Q Consensus       390 -------------~---------~~~~a~~~~~~-~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  434 (630)
                                   .         .+++.+..+.. ..+            ..+......++.++.-+-..|+++.|..++
T Consensus       315 l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI  394 (700)
T KOG1156|consen  315 LSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI  394 (700)
T ss_pred             hhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence                         0         11111111110 001            122344566677788888888888888888


Q ss_pred             HHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHH
Q 006812          435 KRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAA  514 (630)
Q Consensus       435 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  514 (630)
                      +.|++-       .+..+..+..-|.++...|++++|..+++++.++       +.++.. +-..-|.-..+.++.++|.
T Consensus       395 d~AIdH-------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-------D~aDR~-INsKcAKYmLrAn~i~eA~  459 (700)
T KOG1156|consen  395 DLAIDH-------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-------DTADRA-INSKCAKYMLRANEIEEAE  459 (700)
T ss_pred             HHHhcc-------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------cchhHH-HHHHHHHHHHHccccHHHH
Confidence            888762       2233556677788888888888888888887773       222221 1114566667777888887


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHH-HHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          515 QVFAFAKDIMDVSLGPHHADSIE-ACQN--LSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       515 ~~~~~al~~~~~~~~~~~~~~~~-~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                      +...+.-.-....  -++....+ .|+.  -|..|.++|++-.|++-|...-+++.....+
T Consensus       460 ~~~skFTr~~~~~--~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~d  518 (700)
T KOG1156|consen  460 EVLSKFTREGFGA--VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSED  518 (700)
T ss_pred             HHHHHhhhcccch--hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence            7665543321110  11222222 2333  3788999999999999999888888876554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=5.7e-14  Score=121.90  Aligned_cols=236  Identities=15%  Similarity=0.070  Sum_probs=133.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 006812          213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH  292 (630)
Q Consensus       213 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  292 (630)
                      -|.-+.-..+.++|++.|...++        .+|...++...||.+|...|..+.|+.+.+..++- +.   -.......
T Consensus        41 ~GlNfLLs~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pd---lT~~qr~l  108 (389)
T COG2956          41 KGLNFLLSNQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PD---LTFEQRLL  108 (389)
T ss_pred             hHHHHHhhcCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CC---CchHHHHH
Confidence            45555566777888888877663        44556777788888888888888888777665431 10   01223445


Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-chHHHHH
Q 006812          293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE-SETRALV  371 (630)
Q Consensus       293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~  371 (630)
                      ++..||.-|...|-++.|...|....+.      ......++..|..+|....+|++|++..++..+..++. ....+..
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf  182 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF  182 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence            5666677777777776666666543331      12233455556666666666666666666655554433 2334555


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812          372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE  451 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  451 (630)
                      |..++..+....+.+.|...+.+|++..        |....+-..+|.++...|++..|++.++.+++-.      ....
T Consensus       183 yCELAq~~~~~~~~d~A~~~l~kAlqa~--------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn------~~yl  248 (389)
T COG2956         183 YCELAQQALASSDVDRARELLKKALQAD--------KKCVRASIILGRVELAKGDYQKAVEALERVLEQN------PEYL  248 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhC--------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhC------hHHH
Confidence            5555555555555555555555555443        2333444555555555555555555555555421      1111


Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ..+...|..+|.++|+.++.+.++.++.+
T Consensus       249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         249 SEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            33445555555555555555555555554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.72  E-value=7.1e-14  Score=135.33  Aligned_cols=358  Identities=20%  Similarity=0.081  Sum_probs=258.1

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccC-----------hHHHH
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKR-----------FSDSL  177 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~~A~  177 (630)
                      |.....++..+.++...-+.+++++.+..+++......     .+...+.++..+|.+|..+-.           ..+++
T Consensus       390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~-----~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl  464 (799)
T KOG4162|consen  390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ-----RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL  464 (799)
T ss_pred             CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh-----hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence            44445555566655555459999999999999976333     123456777888888754322           44566


Q ss_pred             HHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 006812          178 GYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAE  257 (630)
Q Consensus       178 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  257 (630)
                      +.++++++.         ++.++       .+.+.++.-|..+++.+.|.++.++++++...       +.+.++..++.
T Consensus       465 qale~av~~---------d~~dp-------~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-------~~~~~whLLAL  521 (799)
T KOG4162|consen  465 QALEEAVQF---------DPTDP-------LVIFYLALQYAEQRQLTSALDYAREALALNRG-------DSAKAWHLLAL  521 (799)
T ss_pred             HHHHHHHhc---------CCCCc-------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-------ccHHHHHHHHH
Confidence            666666665         22222       45667999999999999999999999976321       22678999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---hhHHHHH
Q 006812          258 AFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---SELLRAE  334 (630)
Q Consensus       258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~  334 (630)
                      ++...+++.+|+.....+++-....    +.    ....-..+-...++.++|+......+.+.+....-   -+.....
T Consensus       522 vlSa~kr~~~Al~vvd~al~E~~~N----~~----l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~  593 (799)
T KOG4162|consen  522 VLSAQKRLKEALDVVDAALEEFGDN----HV----LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLL  593 (799)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHhhhh----hh----hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh
Confidence            9999999999999999999876642    11    11122333444788888888887777765521110   1112222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhh--------------------c--chHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVRQTEK--------------------E--SETRALVFISMGKALCNQEKFADAKRCL  392 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------------------~--~~~~~~~~~~la~~~~~~~~~~~A~~~~  392 (630)
                      ...+.+....++..+|+..++++......                    +  .......|...+..+...++.++|..++
T Consensus       594 ~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL  673 (799)
T KOG4162|consen  594 RLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCL  673 (799)
T ss_pred             hhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            22333444455666666666655443211                    0  0112446677889999999999999999


Q ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHH
Q 006812          393 EIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAI  472 (630)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (630)
                      .++-.+.        +..+..|+..|.++...|++.+|.+.|..|+.+     ++++  +.+...+|.++...|+..-|.
T Consensus       674 ~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~h--v~s~~Ala~~lle~G~~~la~  738 (799)
T KOG4162|consen  674 LEASKID--------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-----DPDH--VPSMTALAELLLELGSPRLAE  738 (799)
T ss_pred             HHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCC--cHHHHHHHHHHHHhCCcchHH
Confidence            9998876        678899999999999999999999999999987     4443  347889999999999988888


Q ss_pred             H--HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          473 P--YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       473 ~--~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                      .  ++..++++        +|....+|+.+|.++..+|+.++|.++|..|+++-.
T Consensus       739 ~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  739 KRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            8  99999983        466777999999999999999999999999998753

>PRK12370 invasion protein regulator; Provisional

Probab=99.72  E-value=2.1e-15  Score=153.57  Aligned_cols=250  Identities=12%  Similarity=-0.022  Sum_probs=182.1

Q ss_pred             cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 006812          263 LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL---------EEHQKALEQNELSQKVLKTWGLSSELLRA  333 (630)
Q Consensus       263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  333 (630)
                      +.+++|+.+|++++++.+        ..+.++..+|.+|...         +++++|+..+++++++      +|+...+
T Consensus       275 ~~~~~A~~~~~~Al~ldP--------~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l------dP~~~~a  340 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSP--------NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL------DHNNPQA  340 (553)
T ss_pred             HHHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc------CCCCHHH
Confidence            457899999999998543        3355667777766533         4478899988888886      7778888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812          334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA  413 (630)
Q Consensus       334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  413 (630)
                      +..+|.++...|++++|+..|+++++..+.+    +.+++.+|.++...|++++|+..+++++++.        |.....
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--------P~~~~~  408 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLD--------PTRAAA  408 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCChhh
Confidence            8889999999999999999999999875544    4478888999999999999999999988875        222233


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812          414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV  493 (630)
Q Consensus       414 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  493 (630)
                      +..++.++...|++++|+..+++++...      .+.....+..+|.++...|++++|...+.+...        ..|..
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--------~~~~~  474 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQH------LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--------QEITG  474 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhc------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--------ccchh
Confidence            4445556777888999999888877631      111234678889999999999999998877654        34555


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                      ......++..|...|  ++|...+++.++.....  +.+      ...++.+|.-.|+.+.|..+ +++.
T Consensus       475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNN------PGLLPLVLVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHhhhHHHHHH-HHhh
Confidence            666777888888877  47777777766644321  111      22377788888888887766 5554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.72  E-value=2e-15  Score=138.01  Aligned_cols=205  Identities=12%  Similarity=0.100  Sum_probs=165.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP  407 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  407 (630)
                      ......+..+|.++...|++++|+..+++++...+.+    ..++..+|.++...|++++|...+++++...        
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------   95 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLN--------   95 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------
Confidence            4456778889999999999999999999988754333    4578889999999999999999999998764        


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      |.....+.++|.++...|++++|+.++++++...     ........+..+|.++...|++++|..++++++..      
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------  164 (234)
T TIGR02521        96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------  164 (234)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            2334678889999999999999999999998631     11122456788999999999999999999999873      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                        .|.....+..+|.++...|++++|..++++++...        |.....+..++.++...|+.++|..+.+.+...
T Consensus       165 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       165 --DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY--------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             --CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence              24445678899999999999999999999998851        223356667889999999999999888776544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.71  E-value=3.6e-15  Score=151.92  Aligned_cols=222  Identities=10%  Similarity=0.028  Sum_probs=181.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Q 006812          305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL---------GKFEEAINTLKGVVRQTEKESETRALVFISM  375 (630)
Q Consensus       305 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l  375 (630)
                      +++++|+.+|++++++      +|....++..+|.+|...         +++++|+..++++++..+.+    +.++..+
T Consensus       275 ~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~----~~a~~~l  344 (553)
T PRK12370        275 YSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN----PQALGLL  344 (553)
T ss_pred             HHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC----HHHHHHH
Confidence            5678999999999886      788888888999887644         34899999999999976554    4488899


Q ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHH
Q 006812          376 GKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVS  455 (630)
Q Consensus       376 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  455 (630)
                      |.++...|++++|+..+++++++.        |..+.++..+|.++...|++++|+..+++++++     .+.++  ..+
T Consensus       345 g~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~~--~~~  409 (553)
T PRK12370        345 GLINTIHSEYIVGSLLFKQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTINECLKL-----DPTRA--AAG  409 (553)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCh--hhH
Confidence            999999999999999999999875        566678999999999999999999999999997     33322  234


Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                      ..++.+++..|++++|+..+++++..       ..|.....+..+|.++..+|++++|...+++...        ..|..
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--------~~~~~  474 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--------QEITG  474 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--------ccchh
Confidence            45566677899999999999998862       2355566788999999999999999999988755        45666


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      ......++..|...|+  +|...+++.++....
T Consensus       475 ~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~  505 (553)
T PRK12370        475 LIAVNLLYAEYCQNSE--RALPTIREFLESEQR  505 (553)
T ss_pred             HHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence            6778889999998884  888888887665544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.71  E-value=1.9e-13  Score=133.21  Aligned_cols=339  Identities=14%  Similarity=0.085  Sum_probs=233.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812          204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL  283 (630)
Q Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  283 (630)
                      |.....+..+|.++...|+.+.+...+.++.......     ..........+.++...|++++|...++++++..+.  
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--   75 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--   75 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--
Confidence            4456778899999999999999988888877655432     223455667789999999999999999999986442  


Q ss_pred             CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                         +.   .++.. +..+...|++..+.....+++..  ..+..+........+|.++...|++++|+..++++++..+.
T Consensus        76 ---~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~  146 (355)
T cd05804          76 ---DL---LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD  146 (355)
T ss_pred             ---cH---HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence               22   22322 44555555544444444444433  23445777888889999999999999999999999997665


Q ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812          364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK  443 (630)
Q Consensus       364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  443 (630)
                      +    ...+..+|.++...|++++|+.++++++.....    .+......+..+|.++...|++++|+..|++++.....
T Consensus       147 ~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         147 D----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             C----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            5    447889999999999999999999999876532    11233456778999999999999999999998543110


Q ss_pred             CCCCCCchhHH--HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006812          444 LPQAQHSEGSV--SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK  521 (630)
Q Consensus       444 ~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  521 (630)
                          .......  ...+...+...|....+..+ +.+........ +. +.....-...+.++...|+.++|...++...
T Consensus       219 ----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~  291 (355)
T cd05804         219 ----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLLAALK  291 (355)
T ss_pred             ----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                1111111  11233344445554444443 22222221111 11 1122222367888899999999999999887


Q ss_pred             HHHHHhc-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCc
Q 006812          522 DIMDVSL-GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSA  573 (630)
Q Consensus       522 ~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  573 (630)
                      ....... .........+....+.++...|++++|.+.+..++.....+|-.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~  344 (355)
T cd05804         292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH  344 (355)
T ss_pred             HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            7654410 011223446777889999999999999999999999998887653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.7e-14  Score=129.26  Aligned_cols=286  Identities=13%  Similarity=0.075  Sum_probs=223.9

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      +.-....|..++... +|.+|+..|..|+++.+.          .+..|.+.+.++...|+|++|....++.+.+-    
T Consensus        49 Ae~~k~~gn~~yk~k-~Y~nal~~yt~Ai~~~pd----------~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k----  113 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQK-TYGNALKNYTFAIDMCPD----------NASYYSNRAATLMMLGRFEEALGDARQSVRLK----  113 (486)
T ss_pred             HHHHHhhcchHHHHh-hHHHHHHHHHHHHHhCcc----------chhhhchhHHHHHHHHhHhhcccchhhheecC----
Confidence            344455677777777 999999999999998743          36678889999999999999999999988871    


Q ss_pred             hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHhcc--chHHHHHHHHHHHHHHHH
Q 006812          192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL--------EIKELILEE--DSRELGVANRDLAEAFVA  261 (630)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~  261 (630)
                                  +.....+...+.++...++..+|...++..-        .....+...  ..|....+-..-+.++..
T Consensus       114 ------------d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~  181 (486)
T KOG0550|consen  114 ------------DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF  181 (486)
T ss_pred             ------------CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh
Confidence                        2222345567777777777777776655211        111111111  114445555667899999


Q ss_pred             hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc------CCChhHHHHHH
Q 006812          262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW------GLSSELLRAEI  335 (630)
Q Consensus       262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~  335 (630)
                      .|++++|...--..+++..        ....++..-|.+++..++.+.|+.+|++++.+-...      ...+.....+.
T Consensus       182 ~~~~~~a~~ea~~ilkld~--------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k  253 (486)
T KOG0550|consen  182 LGDYDEAQSEAIDILKLDA--------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK  253 (486)
T ss_pred             cccchhHHHHHHHHHhccc--------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence            9999999987666665432        345667777999999999999999999999873222      22255666777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      .-|.-.++.|++..|.+.|.+++.+.+.+....+..|.+.+.+..++|+..+|+.-.+.++.+.        +....++.
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syikall  325 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIKALL  325 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHHHHH
Confidence            7899999999999999999999999999888889999999999999999999999999999986        67889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          416 EISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       416 ~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      ..|.++...++|++|++.|+++++.
T Consensus       326 ~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  326 RRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999986

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.70  E-value=1.2e-12  Score=124.36  Aligned_cols=341  Identities=15%  Similarity=0.038  Sum_probs=237.0

Q ss_pred             HHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          158 MCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK  237 (630)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  237 (630)
                      ..+..-+..+.+.+.++-|...|..+++.                .|..-.++...+..-..-|..+.-..++++++..+
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqv----------------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~  580 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQV----------------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC  580 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhh----------------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            34455556666777777777777777776                23333556666666677788888888888888655


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 006812          238 ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS  317 (630)
Q Consensus       238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  317 (630)
                      ++        .-..+...+.-++..|+...|...+..+.+..+     ++.   .++..-..+.....+++.|..+|.++
T Consensus       581 pk--------ae~lwlM~ake~w~agdv~~ar~il~~af~~~p-----nse---eiwlaavKle~en~e~eraR~llaka  644 (913)
T KOG0495|consen  581 PK--------AEILWLMYAKEKWKAGDVPAARVILDQAFEANP-----NSE---EIWLAAVKLEFENDELERARDLLAKA  644 (913)
T ss_pred             Cc--------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-----CcH---HHHHHHHHHhhccccHHHHHHHHHHH
Confidence            32        234566677888888999999999998887544     222   33444456677788999999988887


Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812          318 QKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG  397 (630)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  397 (630)
                      ...       .....+++.-+.+...+++.++|+.+++++++.++..    ...|..+|+++...++.+.|...|...++
T Consensus       645 r~~-------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f----~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k  713 (913)
T KOG0495|consen  645 RSI-------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF----HKLWLMLGQIEEQMENIEMAREAYLQGTK  713 (913)
T ss_pred             hcc-------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch----HHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence            663       3345667777888889999999999999999966544    44899999999999999999999988877


Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                      .+        |.....|..++.+-...|+.-.|...++++.--       ++.....|.....+-.+.|+.++|.....+
T Consensus       714 ~c--------P~~ipLWllLakleEk~~~~~rAR~ildrarlk-------NPk~~~lwle~Ir~ElR~gn~~~a~~lmak  778 (913)
T KOG0495|consen  714 KC--------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-------NPKNALLWLESIRMELRAGNKEQAELLMAK  778 (913)
T ss_pred             cC--------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc-------CCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66        566678889999999999999999999988652       222345677778888899999999999999


Q ss_pred             HHHHHHHh--------c--CC------------CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          478 AAERLKES--------F--GP------------KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       478 al~~~~~~--------~--~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                      |++-+...        .  +.            .......++..+|..+....++++|.++|.+++.        ..|+.
T Consensus       779 ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--------~d~d~  850 (913)
T KOG0495|consen  779 ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--------KDPDN  850 (913)
T ss_pred             HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--------cCCcc
Confidence            88733211        0  00            0001122444555555566666666666666655        33445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          536 IEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      .+++..+-..+...|.-++-.+.+.++..
T Consensus       851 GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  851 GDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            55555555555556655555555555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.69  E-value=1.5e-12  Score=123.85  Aligned_cols=377  Identities=14%  Similarity=0.080  Sum_probs=262.4

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      ..++....-.+..+ +|.+.+...+..|+-.          |....++...|..+..+|+-++|..+...++..      
T Consensus         8 ~~lF~~~lk~yE~k-QYkkgLK~~~~iL~k~----------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~------   70 (700)
T KOG1156|consen    8 NALFRRALKCYETK-QYKKGLKLIKQILKKF----------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN------   70 (700)
T ss_pred             HHHHHHHHHHHHHH-HHHhHHHHHHHHHHhC----------CccchhHHhccchhhcccchHHHHHHHHHHhcc------
Confidence            34555555666666 8999999988887733          234556777999999999999999999988875      


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG  272 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (630)
                                ++....+|..+|.++....+|++|+++|+.|+.+.        ++....+..++.+..++++++-....-
T Consensus        71 ----------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--------~dN~qilrDlslLQ~QmRd~~~~~~tr  132 (700)
T KOG1156|consen   71 ----------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--------KDNLQILRDLSLLQIQMRDYEGYLETR  132 (700)
T ss_pred             ----------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence                      22334678899999999999999999999999654        334678999999999999999998888


Q ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHHHcCCHHH
Q 006812          273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---SELLRAEIDAANMQIALGKFEE  349 (630)
Q Consensus       273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~  349 (630)
                      .+.++..+.        ....|...+..+...|++..|....+........ +.+   ............+....|.+++
T Consensus       133 ~~LLql~~~--------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~-~~s~~~~e~se~~Ly~n~i~~E~g~~q~  203 (700)
T KOG1156|consen  133 NQLLQLRPS--------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT-SPSKEDYEHSELLLYQNQILIEAGSLQK  203 (700)
T ss_pred             HHHHHhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            887775443        3355777889999999999999988876665541 222   2334455566777888888888


Q ss_pred             HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH------
Q 006812          350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES------  423 (630)
Q Consensus       350 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~------  423 (630)
                      |.+.+..--..    ..+........+.++..++++++|...+...+....        +....+..+-.++..      
T Consensus       204 ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP--------dn~~Yy~~l~~~lgk~~d~~~  271 (700)
T KOG1156|consen  204 ALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP--------DNLDYYEGLEKALGKIKDMLE  271 (700)
T ss_pred             HHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc--------hhHHHHHHHHHHHHHHhhhHH
Confidence            88777653221    111233445678889999999999988887665442        222222221111110      


Q ss_pred             ---------------------------cC-CHHHHH-----------------------------HHHHHHHHHHHhCCC
Q 006812          424 ---------------------------MN-EFETAI-----------------------------SLLKRTLALLEKLPQ  446 (630)
Q Consensus       424 ---------------------------~g-~~~~A~-----------------------------~~~~~al~~~~~~~~  446 (630)
                                                 .| ++.+..                             .++++.+..+....+
T Consensus       272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~  351 (700)
T KOG1156|consen  272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLS  351 (700)
T ss_pred             HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcc
Confidence                                       00 000000                             012222211111111


Q ss_pred             C------------CCch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH
Q 006812          447 A------------QHSE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS  512 (630)
Q Consensus       447 ~------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  512 (630)
                      .            .+|.  ...++.++.-+...|+++.|..+.+.|+.        ..|...+.+..-|.++...|++++
T Consensus       352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~e  423 (700)
T KOG1156|consen  352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDE  423 (700)
T ss_pred             cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHH
Confidence            1            1333  34457889999999999999999999997        678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812          513 AAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR  561 (630)
Q Consensus       513 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  561 (630)
                      |..++.++.++       +.++.. +-..-|....+.++.++|.+...+
T Consensus       424 Aa~~l~ea~el-------D~aDR~-INsKcAKYmLrAn~i~eA~~~~sk  464 (700)
T KOG1156|consen  424 AAAWLDEAQEL-------DTADRA-INSKCAKYMLRANEIEEAEEVLSK  464 (700)
T ss_pred             HHHHHHHHHhc-------cchhHH-HHHHHHHHHHHccccHHHHHHHHH
Confidence            99999999875       334322 223567777888888888776543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.69  E-value=1.2e-14  Score=120.38  Aligned_cols=205  Identities=19%  Similarity=0.118  Sum_probs=175.0

Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                      ....+.+...||.-|...|++..|...+++|++.      +|....++..+|.+|...|+.+.|.+.|++++.+.+++. 
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G-  103 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG-  103 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-
Confidence            3456778889999999999999999999999997      899999999999999999999999999999999776664 


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ  446 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  446 (630)
                         .++++.|..++.+|++++|...|++|+..-      .-+..+.++.|+|.|..+.|+++.|.++|++++++.+..  
T Consensus       104 ---dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--  172 (250)
T COG3063         104 ---DVLNNYGAFLCAQGRPEEAMQQFERALADP------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--  172 (250)
T ss_pred             ---chhhhhhHHHHhCCChHHHHHHHHHHHhCC------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--
Confidence               499999999999999999999999997632      234567899999999999999999999999999973332  


Q ss_pred             CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                           ......++..++..|+|..|..++++...        ..+..+..+.....+-...|+-+.|-++=.+...
T Consensus       173 -----~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~--------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         173 -----PPALLELARLHYKAGDYAPARLYLERYQQ--------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             -----ChHHHHHHHHHHhcccchHHHHHHHHHHh--------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                 23678899999999999999999988765        2235666777777888889998888777666554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.69  E-value=2.1e-14  Score=133.82  Aligned_cols=244  Identities=17%  Similarity=0.082  Sum_probs=175.4

Q ss_pred             cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006812          263 LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI  342 (630)
Q Consensus       263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  342 (630)
                      +..+.++..+.+++...+    .+....+..++.+|.+|...|++++|+..|++++++      .|+...++..+|.++.
T Consensus        40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~~~  109 (296)
T PRK11189         40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNYLGIYLT  109 (296)
T ss_pred             hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHH
Confidence            456777777777775332    134466788999999999999999999999999887      7888999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Q 006812          343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE  422 (630)
Q Consensus       343 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  422 (630)
                      ..|++++|+..|+++++..+.+    ..++.++|.++...|++++|+..+++++.....     .+. ...+   ..+..
T Consensus       110 ~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-----~~~-~~~~---~~l~~  176 (296)
T PRK11189        110 QAGNFDAAYEAFDSVLELDPTY----NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-----DPY-RALW---LYLAE  176 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHH-HHHH---HHHHH
Confidence            9999999999999999976554    448899999999999999999999999876421     121 1122   12345


Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 006812          423 SMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGA  502 (630)
Q Consensus       423 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  502 (630)
                      ..+++++|+..+.++....       .+.  .+ ..+.++...|+..++ ..++.+.+..... ....+....+|+++|.
T Consensus       177 ~~~~~~~A~~~l~~~~~~~-------~~~--~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~-~~l~~~~~ea~~~Lg~  244 (296)
T PRK11189        177 SKLDPKQAKENLKQRYEKL-------DKE--QW-GWNIVEFYLGKISEE-TLMERLKAGATDN-TELAERLCETYFYLAK  244 (296)
T ss_pred             ccCCHHHHHHHHHHHHhhC-------Ccc--cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCc-HHHHHHHHHHHHHHHH
Confidence            5788999999998766421       111  11 135566667777655 3444444311100 0012455679999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812          503 AYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS  548 (630)
Q Consensus       503 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  548 (630)
                      ++...|++++|+.+|++++.+.       .++..+..+.+..+...
T Consensus       245 ~~~~~g~~~~A~~~~~~Al~~~-------~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        245 YYLSLGDLDEAAALFKLALANN-------VYNFVEHRYALLELALL  283 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHH
Confidence            9999999999999999999842       23555554444444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.68  E-value=1.8e-14  Score=131.78  Aligned_cols=205  Identities=19%  Similarity=0.113  Sum_probs=171.3

Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                      ....+..+..+|.++...|++++|+..++++++.      .|....++..+|.++...|++++|+..+++++...+.+  
T Consensus        27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--   98 (234)
T TIGR02521        27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN--   98 (234)
T ss_pred             CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Confidence            3355678889999999999999999999998775      46667888999999999999999999999999876544  


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ  446 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  446 (630)
                        ...+..+|.++...|++++|...+++++....      .+.....+..+|.++...|++++|..++.+++...     
T Consensus        99 --~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----  165 (234)
T TIGR02521        99 --GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----  165 (234)
T ss_pred             --HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence              34788999999999999999999999986421      13345678889999999999999999999998862     


Q ss_pred             CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      +.  ....+..+|.++...|++++|..++++++..        .+.....+..++.++...|+.++|..+.+.+..
T Consensus       166 ~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       166 PQ--RPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             cC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            22  2357789999999999999999999999884        133445666889999999999999998877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.68  E-value=1.7e-14  Score=134.36  Aligned_cols=223  Identities=16%  Similarity=0.037  Sum_probs=163.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      ..+.++..+.+++...+.      .....+..++.+|.+|...|++++|+..|++++.+                .|...
T Consensus        41 ~~e~~i~~~~~~l~~~~~------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~   98 (296)
T PRK11189         41 QQEVILARLNQILASRDL------TDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----------------RPDMA   98 (296)
T ss_pred             HHHHHHHHHHHHHccccC------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCH
Confidence            567788888887754321      12346788999999999999999999999999998                33445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .+++.+|.++...|++++|+..|++++++.        |....++.++|.++...|++++|+..++++++..+     ++
T Consensus        99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P-----~~  165 (296)
T PRK11189         99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP-----ND  165 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC
Confidence            788999999999999999999999999654        33467899999999999999999999999998654     33


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hhc
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQT---EKE  364 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~  364 (630)
                      +. ...+   ..+....+++++|+..+.++....     ++..   + ..+.++...|+..++ ..+..+.+..   ...
T Consensus       166 ~~-~~~~---~~l~~~~~~~~~A~~~l~~~~~~~-----~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l  231 (296)
T PRK11189        166 PY-RALW---LYLAESKLDPKQAKENLKQRYEKL-----DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL  231 (296)
T ss_pred             HH-HHHH---HHHHHccCCHHHHHHHHHHHHhhC-----Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH
Confidence            32 1111   223455789999999997755321     1111   1 134555566766544 2344443322   222


Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812          365 SETRALVFISMGKALCNQEKFADAKRCLEIACGIL  399 (630)
Q Consensus       365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  399 (630)
                      .+....+|+.+|.++...|++++|+.+|++++...
T Consensus       232 ~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        232 AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            34456799999999999999999999999998764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.68  E-value=3.2e-13  Score=134.04  Aligned_cols=432  Identities=13%  Similarity=0.052  Sum_probs=270.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      ..|..+|..|...+ ++..|+..|+-+++..+          ....++..+|.+|...|++..|++.|.+|..+      
T Consensus       563 ~nW~~rG~yyLea~-n~h~aV~~fQsALR~dP----------kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------  625 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAH-NLHGAVCEFQSALRTDP----------KDYNLWLGLGEAYPESGRYSHALKVFTKASLL------  625 (1238)
T ss_pred             hhhhhccccccCcc-chhhHHHHHHHHhcCCc----------hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc------
Confidence            45677888888888 99999999999998753          45678899999999999999999999999887      


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG  272 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (630)
                                .|.-....+..+......|+|.+|+..+...+.....-. ......+.++..++..+...|-+.+|..++
T Consensus       626 ----------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~  694 (1238)
T KOG1127|consen  626 ----------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFF  694 (1238)
T ss_pred             ----------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence                      344445667789999999999999999998876554321 223456788888888889999999999999


Q ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHh---c--------------------cccH---H---HHHHHHHHHHHHHHH
Q 006812          273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYS---G--------------------LEEH---Q---KALEQNELSQKVLKT  323 (630)
Q Consensus       273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~--------------------~g~~---~---~A~~~~~~a~~~~~~  323 (630)
                      +++++.+.-............+..+|....   .                    .+..   +   -+.+++-..+.+   
T Consensus       695 eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl---  771 (1238)
T KOG1127|consen  695 EKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL---  771 (1238)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH---
Confidence            998876653321110111111111111110   0                    0000   0   111222222221   


Q ss_pred             cCCChhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhhhcch-----------------------------
Q 006812          324 WGLSSELLRAEIDAANMQIA--------LGKFEEAINTLKGVVRQTEKESE-----------------------------  366 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~~~~~~-----------------------------  366 (630)
                          ......+.++|..|+.        +.+...|+..++++++...++..                             
T Consensus       772 ----~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep  847 (1238)
T KOG1127|consen  772 ----AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEP  847 (1238)
T ss_pred             ----hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccc
Confidence                1225566666666554        22234677777777765443221                             


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ  446 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  446 (630)
                      .....|.++|.++....+++-|...+..+..+.        |.....|...+.+....|+.-++...+...-++....  
T Consensus       848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd--------P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~--  917 (1238)
T KOG1127|consen  848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD--------PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE--  917 (1238)
T ss_pred             cchhheeccceeEEecccHHHhhHHHHhhhhcC--------chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc--
Confidence            112244555555555555555555555554443        4555666666666666666666666665543332221  


Q ss_pred             CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH--HHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE--RLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                      ...+....+..-.......|++++-+...+++-.  +.-+.+-..+|+...++...|.....++.+++|.+.+.+.+.+.
T Consensus       918 gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglL  997 (1238)
T KOG1127|consen  918 GKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLL  997 (1238)
T ss_pred             cccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222334455556667777887776665554322  11111223688999999999999999999999999999999887


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHH-cCCC----chhHHHHHHHHHHHHHHHh
Q 006812          525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA-IDAWES-HGPS----AQDELREARRLLEQLKIKA  591 (630)
Q Consensus       525 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~-~~~~----~~~~~~~A~~~~~~~~~~~  591 (630)
                      +..+.....+  .+-...|+++...|+++.|...+... .+..+. .|-+    ..+++.++...|+++....
T Consensus       998 e~k~d~sqyn--vak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen  998 ELKLDESQYN--VAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred             HHHHhhhhhh--hhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhc
Confidence            7665432222  25567788899999988776554322 111111 1111    2456777888887765543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.67  E-value=1.4e-13  Score=136.50  Aligned_cols=398  Identities=12%  Similarity=0.007  Sum_probs=237.5

Q ss_pred             cCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHH
Q 006812          106 FDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANR  185 (630)
Q Consensus       106 ~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (630)
                      .-|+..+.++..+|..|.+.- |...|..+|.+|.++...          .+.+.-..+..|....+++.|....-.+-+
T Consensus       486 rld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDat----------daeaaaa~adtyae~~~we~a~~I~l~~~q  554 (1238)
T KOG1127|consen  486 RLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDAT----------DAEAAAASADTYAEESTWEEAFEICLRAAQ  554 (1238)
T ss_pred             hcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCch----------hhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence            367788888888888888887 888888888888766532          233444566666666677666666333222


Q ss_pred             HHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCH
Q 006812          186 MLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNF  265 (630)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  265 (630)
                      ....              ......+..+|..|...+++..|+..|+.++.        .+|....++..+|.+|...|++
T Consensus       555 ka~a--------------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--------~dPkD~n~W~gLGeAY~~sGry  612 (1238)
T KOG1127|consen  555 KAPA--------------FACKENWVQRGPYYLEAHNLHGAVCEFQSALR--------TDPKDYNLWLGLGEAYPESGRY  612 (1238)
T ss_pred             hchH--------------HHHHhhhhhccccccCccchhhHHHHHHHHhc--------CCchhHHHHHHHHHHHHhcCce
Confidence            2111              11112334467777777777777777777773        3344466777777777777777


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHc
Q 006812          266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG-LSSELLRAEIDAANMQIAL  344 (630)
Q Consensus       266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~  344 (630)
                      ..|++.|.++..+.+        .....-+..+.+....|+|.+|+..+...+....... ...+.+.++...+..+...
T Consensus       613 ~~AlKvF~kAs~LrP--------~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~  684 (1238)
T KOG1127|consen  613 SHALKVFTKASLLRP--------LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAIT  684 (1238)
T ss_pred             ehHHHhhhhhHhcCc--------HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            777777777766433        2233445566667777777777777766555432211 1134455555555555555


Q ss_pred             CCHHHHHHHHHHHHHHhhh---------------------------------------------------cc--------
Q 006812          345 GKFEEAINTLKGVVRQTEK---------------------------------------------------ES--------  365 (630)
Q Consensus       345 g~~~~A~~~~~~~l~~~~~---------------------------------------------------~~--------  365 (630)
                      |-+.+|..+++++++.+..                                                   +.        
T Consensus       685 gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c  764 (1238)
T KOG1127|consen  685 GFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYEC  764 (1238)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence            5555555555554432210                                                   00        


Q ss_pred             -------hHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812          366 -------ETRALVFISMGKALCN--------QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA  430 (630)
Q Consensus       366 -------~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  430 (630)
                             ...+..|+++|.-|..        +.+...|+.++.+++++...        ....|+.||.+ ...|++.-|
T Consensus       765 ~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an--------n~~~WnaLGVl-sg~gnva~a  835 (1238)
T KOG1127|consen  765 GIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN--------NEGLWNALGVL-SGIGNVACA  835 (1238)
T ss_pred             hhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc--------cHHHHHHHHHh-hccchhhhh
Confidence                   0012345666665554        12334677888888777632        33566667666 455777777


Q ss_pred             HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH--------
Q 006812          431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGA--------  502 (630)
Q Consensus       431 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~--------  502 (630)
                      ..+|-+++...+.       ....|.++|.++....+++.|.+.+.++..+.        |.....+...+.        
T Consensus       836 QHCfIks~~sep~-------~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd--------P~nl~~WlG~Ali~eavG~i  900 (1238)
T KOG1127|consen  836 QHCFIKSRFSEPT-------CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD--------PLNLVQWLGEALIPEAVGRI  900 (1238)
T ss_pred             hhhhhhhhhcccc-------chhheeccceeEEecccHHHhhHHHHhhhhcC--------chhhHHHHHHHHhHHHHHHH
Confidence            7777766653211       23466777777777777777777776655421        222222333333        


Q ss_pred             -------------------------------HHHHcCChhHHHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812          503 -------------------------------AYLELDRPQSAAQVFAFAKD--IMDVSLGPHHADSIEACQNLSKAYSSM  549 (630)
Q Consensus       503 -------------------------------~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~  549 (630)
                                                     .....|++++-+...+++-.  +..+.+-..+|+...++...|.....+
T Consensus       901 i~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL  980 (1238)
T KOG1127|consen  901 IERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHL  980 (1238)
T ss_pred             HHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHH
Confidence                                           33344455544444433221  111112236788888899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 006812          550 GSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       550 g~~~~A~~~~~~al~~~~~  568 (630)
                      +.+.+|.+.+.+.+.+.+.
T Consensus       981 ~ey~~a~ela~RliglLe~  999 (1238)
T KOG1127|consen  981 EEYRAALELATRLIGLLEL  999 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887776

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.67  E-value=2.3e-13  Score=132.73  Aligned_cols=304  Identities=12%  Similarity=0.025  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812          111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL  190 (630)
Q Consensus       111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  190 (630)
                      .+...+..|......| |+++|.+...++-+.      .+  .|  ...+...+.+....|+++.|..++.++.+..+. 
T Consensus        83 ~~~~~~~~gl~a~~eG-d~~~A~k~l~~~~~~------~~--~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-  150 (398)
T PRK10747         83 RARKQTEQALLKLAEG-DYQQVEKLMTRNADH------AE--QP--VVNYLLAAEAAQQRGDEARANQHLERAAELADN-  150 (398)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc------cc--ch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-
Confidence            4455667787777788 999999666653321      11  11  223444566769999999999999999875111 


Q ss_pred             hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH
Q 006812          191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP  270 (630)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  270 (630)
                                   ... ......+.++...|++++|+..+++..+..        |....++..++.+|...|++++|+.
T Consensus       151 -------------~~~-~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--------P~~~~al~ll~~~~~~~gdw~~a~~  208 (398)
T PRK10747        151 -------------DQL-PVEITRVRIQLARNENHAARHGVDKLLEVA--------PRHPEVLRLAEQAYIRTGAWSSLLD  208 (398)
T ss_pred             -------------chH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHhHHHHHH
Confidence                         111 122245899999999999999999987443        4445778889999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCHHHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcC
Q 006812          271 FGLKALEIHKKGLGHNSVEVA----HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL-SSELLRAEIDAANMQIALG  345 (630)
Q Consensus       271 ~~~~al~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g  345 (630)
                      .+.+..+....    +.....    .++..+........+-    +.+.+.   .+.... .+........++..+...|
T Consensus       209 ~l~~l~k~~~~----~~~~~~~l~~~a~~~l~~~~~~~~~~----~~l~~~---w~~lp~~~~~~~~~~~~~A~~l~~~g  277 (398)
T PRK10747        209 ILPSMAKAHVG----DEEHRAMLEQQAWIGLMDQAMADQGS----EGLKRW---WKNQSRKTRHQVALQVAMAEHLIECD  277 (398)
T ss_pred             HHHHHHHcCCC----CHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHH---HHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence            99887764321    111111    1221211111111121    222221   122211 2556778889999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC
Q 006812          346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN  425 (630)
Q Consensus       346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  425 (630)
                      +.++|...++++++. +. ++.   .....+  ....++.+++++.+++.++..        |+.+..+..+|.++...+
T Consensus       278 ~~~~A~~~L~~~l~~-~~-~~~---l~~l~~--~l~~~~~~~al~~~e~~lk~~--------P~~~~l~l~lgrl~~~~~  342 (398)
T PRK10747        278 DHDTAQQIILDGLKR-QY-DER---LVLLIP--RLKTNNPEQLEKVLRQQIKQH--------GDTPLLWSTLGQLLMKHG  342 (398)
T ss_pred             CHHHHHHHHHHHHhc-CC-CHH---HHHHHh--hccCCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCC
Confidence            999999999999883 22 222   111222  224489999999888876543        566688899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812          426 EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL  482 (630)
Q Consensus       426 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (630)
                      ++++|.++|+++++.        .|+...+..++.++.+.|+.++|..+|++++.+.
T Consensus       343 ~~~~A~~~le~al~~--------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        343 EWQEASLAFRAALKQ--------RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999999999985        2344567789999999999999999999998754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=6.2e-15  Score=138.17  Aligned_cols=270  Identities=19%  Similarity=0.134  Sum_probs=199.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHH
Q 006812          253 RDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR  332 (630)
Q Consensus       253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  332 (630)
                      +..|..+.+.|+..+|.-.|+.++.        ..|..+.+|..||.+....++-..|+..+++++++      +|....
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L------dP~Nle  354 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL------DPTNLE  354 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc------CCccHH
Confidence            3468889999999999999999987        56777899999999999999999999999999998      899999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH---HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA---LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      ++..||..|...|.-.+|+.++.+-+...++......   ........-......+..-.+.|-.+..   ....   ..
T Consensus       355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~---~~~~---~~  428 (579)
T KOG1125|consen  355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR---QLPT---KI  428 (579)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH---hCCC---CC
Confidence            9999999999999999999999988764432100000   0000000000000111112222222222   2111   12


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK  489 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (630)
                      .+.+...||.+|...|+|++|+.+|+.|+..       .+.+...|+.||-.+....+.++|+..|.+|+++        
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------  493 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------  493 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------
Confidence            3477889999999999999999999999984       3335678999999999999999999999999994        


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHhcCCHHHHHH
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD--SIEACQNLSKAYSSMGSYTLAIE  557 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~  557 (630)
                      .|..+.+.++||..+..+|.|++|..+|-.|+.+..+..+.....  .-.+|..|-.++..+++.+-+..
T Consensus       494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            477888999999999999999999999999999987743322111  12455555566666776664443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=5e-13  Score=117.48  Aligned_cols=369  Identities=13%  Similarity=0.088  Sum_probs=231.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      ||..|+.+++-.+...++.         ....-.++|.|++.+|+|++|...|.-+..-              +.  .-+
T Consensus        37 DytGAislLefk~~~~~EE---------E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------------~~--~~~   91 (557)
T KOG3785|consen   37 DYTGAISLLEFKLNLDREE---------EDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--------------DD--APA   91 (557)
T ss_pred             cchhHHHHHHHhhccchhh---------hHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--------------CC--CCc
Confidence            8999999888766443322         2344567999999999999999999766542              11  113


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHHh--------ccchHHHHHHHHHHHHHHHHhcCHHHHH
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLE----------IKELIL--------EEDSRELGVANRDLAEAFVAVLNFKEAL  269 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~----------~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~  269 (630)
                      ....+|+.+++..|.|.+|...-.++-+          +.-+..        ...-.+..+-...|+.+.+..-.|++|+
T Consensus        92 el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAI  171 (557)
T KOG3785|consen   92 ELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAI  171 (557)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Confidence            5566899999999999999887665421          010100        0000122233445677777777888888


Q ss_pred             HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc--CC-
Q 006812          270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL--GK-  346 (630)
Q Consensus       270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~--g~-  346 (630)
                      +.|.+.+.        ++++....-..++.+|+++.-++-+.+.+.-.+   +..+++   ..+.+..+...++.  |+ 
T Consensus       172 dvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL---~q~pdS---tiA~NLkacn~fRl~ngr~  237 (557)
T KOG3785|consen  172 DVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL---RQFPDS---TIAKNLKACNLFRLINGRT  237 (557)
T ss_pred             HHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH---HhCCCc---HHHHHHHHHHHhhhhccch
Confidence            88888775        566666667788999999998888877665433   333333   33333333333222  21 


Q ss_pred             ---------------HHHHHHHHHH----------HHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812          347 ---------------FEEAINTLKG----------VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDK  401 (630)
Q Consensus       347 ---------------~~~A~~~~~~----------~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  401 (630)
                                     |..+..+++.          +++..+..-...+.+..++...|.++++..+|......       
T Consensus       238 ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-------  310 (557)
T KOG3785|consen  238 AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-------  310 (557)
T ss_pred             hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-------
Confidence                           2222222222          22222322233466788899999999999998876654       


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc--hhHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812          402 KETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS--EGSVSARIGWLLLLTGKVPQAIPYLESAA  479 (630)
Q Consensus       402 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al  479 (630)
                      ..    |....-|...|.++...|+--...+.++-|-+.+.-+.+....  ...-...++.+++-..++++.+.++...-
T Consensus       311 l~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~  386 (557)
T KOG3785|consen  311 LD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE  386 (557)
T ss_pred             cC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    3444667777888888887766666666666555444221111  12234567777777788888888777655


Q ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812          480 ERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQ  559 (630)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  559 (630)
                      ..+    ..++    ...++++.++...|+|.+|.+.|-+.-.       ++-.+.......||.||...|.++-|-+.+
T Consensus       387 sYF----~NdD----~Fn~N~AQAk~atgny~eaEelf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  387 SYF----TNDD----DFNLNLAQAKLATGNYVEAEELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQLAWDMM  451 (557)
T ss_pred             HHh----cCcc----hhhhHHHHHHHHhcChHHHHHHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            433    1121    2456888999999999999888866532       222233345567889999988888887776


Q ss_pred             HH
Q 006812          560 QR  561 (630)
Q Consensus       560 ~~  561 (630)
                      -+
T Consensus       452 lk  453 (557)
T KOG3785|consen  452 LK  453 (557)
T ss_pred             Hh
Confidence            54

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=6.3e-12  Score=118.36  Aligned_cols=403  Identities=14%  Similarity=0.090  Sum_probs=254.1

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh-------
Q 006812          116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG-------  188 (630)
Q Consensus       116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------  188 (630)
                      +..+.|.|+.+ ..++|+..++- +.   .         .....+...|.+++++|+|++|...|+..++--.       
T Consensus        83 fEKAYc~Yrln-k~Dealk~~~~-~~---~---------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~  148 (652)
T KOG2376|consen   83 FEKAYCEYRLN-KLDEALKTLKG-LD---R---------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER  148 (652)
T ss_pred             HHHHHHHHHcc-cHHHHHHHHhc-cc---c---------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence            67888889998 99999998871 11   1         1123556788999999999999999987743211       


Q ss_pred             ---------HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccch-------HHHHHHH
Q 006812          189 ---------RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDS-------RELGVAN  252 (630)
Q Consensus       189 ---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~  252 (630)
                               ..... +-...+.+.......+++.+.++...|+|.+|++.+++++.++++.+..++       .++..+.
T Consensus       149 r~nl~a~~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir  227 (652)
T KOG2376|consen  149 RANLLAVAAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR  227 (652)
T ss_pred             HHHHHHHHHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence                     00000 011122223344577889999999999999999999999999887654332       2456677


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHH-HHHHHHH-----HHHHHHHcCC
Q 006812          253 RDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQK-ALEQNEL-----SQKVLKTWGL  326 (630)
Q Consensus       253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~-----a~~~~~~~~~  326 (630)
                      ..++.++..+|+.++|...|...+....    .+.+..+.+-+||..+-....-++. ++..++.     +-.....+. 
T Consensus       228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~----~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls-  302 (652)
T KOG2376|consen  228 VQLAYVLQLQGQTAEASSIYVDIIKRNP----ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS-  302 (652)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhcC----CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH-
Confidence            8899999999999999999998887544    3666777777777665444433331 1111111     000000000 


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES-ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  405 (630)
                      .......+.+.+.+.+..+..+.+.+.....    +... .....++.. .........+.+|.+++...-+-       
T Consensus       303 ~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l----p~~~p~~~~~~ll~-~~t~~~~~~~~ka~e~L~~~~~~-------  370 (652)
T KOG2376|consen  303 KKQKQAIYRNNALLALFTNKMDQVRELSASL----PGMSPESLFPILLQ-EATKVREKKHKKAIELLLQFADG-------  370 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC----CccCchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhcc-------
Confidence            0122334555566666666655555444332    2222 221222222 22222222456666655543221       


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                      .+.....+...++.+...+|+++.|++.+...+.........-.....+-..+-.++.+.++-+-|...+.+++..++..
T Consensus       371 ~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~  450 (652)
T KOG2376|consen  371 HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ  450 (652)
T ss_pred             CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            22233567788899999999999999999865543322222111112244556667888888888999999999987765


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812          486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQ  560 (630)
Q Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  560 (630)
                      ... .+.....+..++..-.+.|+-++|...+++.++        .+|...+++..+...|... +.++|..+-+
T Consensus       451 ~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--------~n~~d~~~l~~lV~a~~~~-d~eka~~l~k  515 (652)
T KOG2376|consen  451 QTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVK--------FNPNDTDLLVQLVTAYARL-DPEKAESLSK  515 (652)
T ss_pred             ccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--------hCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence            432 244455666778888888999999999999988        3456667788887777765 5667666543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.6e-11  Score=115.65  Aligned_cols=407  Identities=15%  Similarity=0.141  Sum_probs=259.4

Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCc
Q 006812          121 KLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVE  200 (630)
Q Consensus       121 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  200 (630)
                      .+...+ +|++|+....+.+.+.++          ...++..--.+....++|++|+...+.-...              
T Consensus        21 ~~~~~~-e~e~a~k~~~Kil~~~pd----------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------------   75 (652)
T KOG2376|consen   21 RHGKNG-EYEEAVKTANKILSIVPD----------DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------------   75 (652)
T ss_pred             Hhccch-HHHHHHHHHHHHHhcCCC----------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------------
Confidence            344555 999999999888776522          2344555567778889999998555432221              


Q ss_pred             cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          201 DIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                         .......+.-+.|.++.+..++|+..++- +       .+.+   ..++..-|.+++++|+|++|...|+..++-..
T Consensus        76 ---~~~~~~~fEKAYc~Yrlnk~Dealk~~~~-~-------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   76 ---LVINSFFFEKAYCEYRLNKLDEALKTLKG-L-------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             ---hhcchhhHHHHHHHHHcccHHHHHHHHhc-c-------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence               01112226789999999999999998872 1       1221   23566678999999999999999987743110


Q ss_pred             -----------------------hhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc---CCC------h
Q 006812          281 -----------------------KGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW---GLS------S  328 (630)
Q Consensus       281 -----------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~------~  328 (630)
                                             +.........-..++|.+.++...|+|.+|++.+++|+++.+..   ++.      .
T Consensus       142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~  221 (652)
T KOG2376|consen  142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEE  221 (652)
T ss_pred             chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence                                   11111122345678899999999999999999999998886542   111      2


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH-HHH--------HHHHHHHHH
Q 006812          329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD-AKR--------CLEIACGIL  399 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~--------~~~~a~~~~  399 (630)
                      ....+...++.++..+|+..+|...|...+...+.+.+..+.+-+++..+-....-++. ++.        ..+..+..+
T Consensus       222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L  301 (652)
T KOG2376|consen  222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL  301 (652)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence            34556778999999999999999999999998888877777777777544333322221 111        111111111


Q ss_pred             HhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHH-HHHHHHHcCChhhHHHHHHHH
Q 006812          400 DKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESA  478 (630)
Q Consensus       400 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~a  478 (630)
                      .      +.....++.+.+.+.+..+.-+.+.+..       ....+. .|...+-.. ..........+.+|.+++...
T Consensus       302 s------~~qk~~i~~N~~lL~l~tnk~~q~r~~~-------a~lp~~-~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~  367 (652)
T KOG2376|consen  302 S------KKQKQAIYRNNALLALFTNKMDQVRELS-------ASLPGM-SPESLFPILLQEATKVREKKHKKAIELLLQF  367 (652)
T ss_pred             H------HHHHHHHHHHHHHHHHHhhhHHHHHHHH-------HhCCcc-CchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            1      1123345555666555555555544332       233222 222111111 222222222577777777766


Q ss_pred             HHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhcCCHHHH
Q 006812          479 AERLKESFGPKHFGV-GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP--HHADSIEACQNLSKAYSSMGSYTLA  555 (630)
Q Consensus       479 l~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A  555 (630)
                      .+        .+|.. ..+...++.+...+|+++.|++.+...+..+...+..  ..|.   +-..+-..|...++.+-|
T Consensus       368 ~~--------~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~---~V~aiv~l~~~~~~~~~a  436 (652)
T KOG2376|consen  368 AD--------GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG---TVGAIVALYYKIKDNDSA  436 (652)
T ss_pred             hc--------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh---HHHHHHHHHHhccCCccH
Confidence            55        45554 6677888999999999999999999666444333221  3343   334456677888888889


Q ss_pred             HHHHHHHHHHHHHcCCC----------------chhHHHHHHHHHHHHHHHh
Q 006812          556 IEFQQRAIDAWESHGPS----------------AQDELREARRLLEQLKIKA  591 (630)
Q Consensus       556 ~~~~~~al~~~~~~~~~----------------~~~~~~~A~~~~~~~~~~~  591 (630)
                      ...+.+|+.-+......                ..|.-++|..+++++.+..
T Consensus       437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n  488 (652)
T KOG2376|consen  437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN  488 (652)
T ss_pred             HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence            99999999887763322                3477888999999887743

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.65  E-value=1.1e-11  Score=117.93  Aligned_cols=312  Identities=14%  Similarity=-0.003  Sum_probs=250.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      ..+..-+..+.+.+.++-|...|..+++.+...        -..+...+..-...|..++-..++++++...++.     
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k--------~slWlra~~~ek~hgt~Esl~Allqkav~~~pka-----  583 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCK--------KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA-----  583 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhccch--------hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc-----
Confidence            345556677777888888888888888665332        3556667777777888999999999999876532     


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET  367 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  367 (630)
                         -..+...+..+...|+...|...+.++.+.      .|..-..+..-..+.....+++.|..++.++....+.    
T Consensus       584 ---e~lwlM~ake~w~agdv~~ar~il~~af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~sgT----  650 (913)
T KOG0495|consen  584 ---EILWLMYAKEKWKAGDVPAARVILDQAFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT----  650 (913)
T ss_pred             ---hhHHHHHHHHHHhcCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc----
Confidence               244556688888899999999999988876      5666777777788888999999999999998874332    


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                       ..+|+.-+.+...+++.++|+++++++++.+        |+....|..+|+++..+++.+.|.+.|...+..++..   
T Consensus       651 -eRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~---  718 (913)
T KOG0495|consen  651 -ERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS---  718 (913)
T ss_pred             -chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC---
Confidence             4578888888899999999999999999987        6777999999999999999999999998877643222   


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                          .-.|..++.+-.+.|+.-.|...++++.-        .+|.....|.....+-.+.|+.+.|.....+|++-+...
T Consensus       719 ----ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  719 ----IPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS  786 (913)
T ss_pred             ----chHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence                34789999999999999999999999875        568888888888888899999999999998888654321


Q ss_pred             c----------C---------------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          528 L----------G---------------PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       528 ~----------~---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                      .          .               .++|   .++..+|.++....++++|.++|.+++++...+|+.
T Consensus       787 g~LWaEaI~le~~~~rkTks~DALkkce~dp---hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~  853 (913)
T KOG0495|consen  787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDP---HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA  853 (913)
T ss_pred             chhHHHHHHhccCcccchHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence            0          0               1112   467778999999999999999999999987777764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.1e-12  Score=117.82  Aligned_cols=280  Identities=14%  Similarity=0.069  Sum_probs=222.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN  286 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  286 (630)
                      ...+..+|.+++..|++.+|+..|+++.-        -+|......-..|.++...|++++-..+....+.+...     
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--------~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-----  298 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLC--------ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-----  298 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhh--------CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-----
Confidence            35667899999999999999999999873        34666777777888999999999888777776665432     


Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                         .+.-++.-+...+...++..|+.+-+++++.      ++....++...|.++...|+.++|+-.|+.+....+    
T Consensus       299 ---ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap----  365 (564)
T KOG1174|consen  299 ---TASHWFVHAQLLYDEKKFERALNFVEKCIDS------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP----  365 (564)
T ss_pred             ---chhhhhhhhhhhhhhhhHHHHHHHHHHHhcc------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcch----
Confidence               1233455577888899999999999998886      777888999999999999999999999999988543    


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHHHHhC
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEIS-MQYES-MNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~  444 (630)
                      ....+|..|..+|...|++.+|....+.++..+        +..+.++..+| .++.. -.--++|.+++++++.+    
T Consensus       366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~----  433 (564)
T KOG1174|consen  366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI----  433 (564)
T ss_pred             hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc----
Confidence            335689999999999999999999999888877        45667777775 44433 33457899999999885    


Q ss_pred             CCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          445 PQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                       .  +....+-..++.++...|++..++.++++.+..+        ++ ......||.++...+.+++|.++|..|+.  
T Consensus       434 -~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--  499 (564)
T KOG1174|consen  434 -N--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR--  499 (564)
T ss_pred             -C--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence             1  2224466889999999999999999999999843        22 23677899999999999999999999998  


Q ss_pred             HHhcCCCCHHHHHHHHHHHH
Q 006812          525 DVSLGPHHADSIEACQNLSK  544 (630)
Q Consensus       525 ~~~~~~~~~~~~~~~~~la~  544 (630)
                            .+|..-.++..+-.
T Consensus       500 ------~dP~~~~sl~Gl~~  513 (564)
T KOG1174|consen  500 ------QDPKSKRTLRGLRL  513 (564)
T ss_pred             ------cCccchHHHHHHHH
Confidence                  34555455544433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=2.9e-14  Score=133.76  Aligned_cols=270  Identities=12%  Similarity=0.084  Sum_probs=199.8

Q ss_pred             HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      +..|..+++.|+..+|.-.|+.|+.-                .|.-+.+|..||.+....++-..|+..+++|+++.   
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkq----------------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---  349 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQ----------------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD---  349 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhh----------------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---
Confidence            45889999999999999999999887                56667899999999999999999999999999654   


Q ss_pred             hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC--CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 006812          241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG--HNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQ  318 (630)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  318 (630)
                           |....++..||..|...|.-.+|..++.+-+.......-  ........   ...........+..-.+.|-   
T Consensus       350 -----P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~---~~~~s~~~~~~l~~i~~~fL---  418 (579)
T KOG1125|consen  350 -----PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF---ENTKSFLDSSHLAHIQELFL---  418 (579)
T ss_pred             -----CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc---cCCcCCCCHHHHHHHHHHHH---
Confidence                 445789999999999999999999999988764422100  00000000   00000000001111112222   


Q ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812          319 KVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI  398 (630)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  398 (630)
                      +.....+. .....+...||.+|...|+|++|+++|+.++...+.+    ...|+.||-.+..-.+.++|+..|.+|+++
T Consensus       419 eaa~~~~~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd----~~lWNRLGAtLAN~~~s~EAIsAY~rALqL  493 (579)
T KOG1125|consen  419 EAARQLPT-KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND----YLLWNRLGATLANGNRSEEAISAYNRALQL  493 (579)
T ss_pred             HHHHhCCC-CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch----HHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence            22222221 2457788899999999999999999999999965544    569999999999999999999999999998


Q ss_pred             HHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC---chhHHHHHHHHHHHHcCChhhHHH
Q 006812          399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH---SEGSVSARIGWLLLLTGKVPQAIP  473 (630)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~  473 (630)
                      .        |...++.++||..++..|.|++|.++|-.|+.+.++..+...   +...+|..|=.++...++.+-+..
T Consensus       494 q--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  494 Q--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             C--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            7        788899999999999999999999999999999877433221   122466666566666676664443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=3.4e-12  Score=112.36  Aligned_cols=424  Identities=14%  Similarity=0.124  Sum_probs=260.9

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHH----
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKAN----  184 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----  184 (630)
                      .+....-..+|.|+++.| ||++|+..|+-+...      ++.    .+....+++.+++.+|.|.+|...-.++-    
T Consensus        54 EEE~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~------~~~----~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL  122 (557)
T KOG3785|consen   54 EEEDSLQLWIAHCYFHLG-DYEEALNVYTFLMNK------DDA----PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPL  122 (557)
T ss_pred             hhhHHHHHHHHHHHHhhc-cHHHHHHHHHHHhcc------CCC----CcccchhHHHHHHHHHHHHHHHHHHhhCCCChH
Confidence            344456677999999999 999999999876541      121    23455679999999999999998876652    


Q ss_pred             ------HHHhHhhhcC----CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 006812          185 ------RMLGRLEEEG----LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRD  254 (630)
Q Consensus       185 ------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  254 (630)
                            .+..++.++.    .+.+..|    ..+-...|+.+++..-.|.+|++.|.+++        .++|.....-..
T Consensus       123 ~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL--------~dn~ey~alNVy  190 (557)
T KOG3785|consen  123 CIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVL--------QDNPEYIALNVY  190 (557)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------hcChhhhhhHHH
Confidence                  1122222211    0000001    11223467778888888999999998887        566766777788


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc--ccHHHHHH---------HHHHHHHHHHH
Q 006812          255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL--EEHQKALE---------QNELSQKVLKT  323 (630)
Q Consensus       255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~---------~~~~a~~~~~~  323 (630)
                      ++.||.+..-|+-+.+.+.--+...        |+...+.+..+...++.  |+..++..         .|..+..+++.
T Consensus       191 ~ALCyyKlDYydvsqevl~vYL~q~--------pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH  262 (557)
T KOG3785|consen  191 MALCYYKLDYYDVSQEVLKVYLRQF--------PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH  262 (557)
T ss_pred             HHHHHHhcchhhhHHHHHHHHHHhC--------CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence            9999999999998887766555432        22223333333333332  22211110         01111111111


Q ss_pred             ------cCC---------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH
Q 006812          324 ------WGL---------SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA  388 (630)
Q Consensus       324 ------~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  388 (630)
                            .|.         -...+.+..++...|..+++..+|..+.+.       ..|..+.-|...|.++...|+--..
T Consensus       263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-------l~PttP~EyilKgvv~aalGQe~gS  335 (557)
T KOG3785|consen  263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-------LDPTTPYEYILKGVVFAALGQETGS  335 (557)
T ss_pred             CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-------cCCCChHHHHHHHHHHHHhhhhcCc
Confidence                  000         022456778889999999999999888765       3444455677778888888877777


Q ss_pred             HHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCC
Q 006812          389 KRCLEIACGILDKKETIS-PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGK  467 (630)
Q Consensus       389 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  467 (630)
                      .+.+..|.+.+.-.++.. .-+.......++.+++...++++.+.++...-..+-.       +.....+++.++...|+
T Consensus       336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-------dD~Fn~N~AQAk~atgn  408 (557)
T KOG3785|consen  336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-------DDDFNLNLAQAKLATGN  408 (557)
T ss_pred             HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cchhhhHHHHHHHHhcC
Confidence            777766666554322111 0122233455677777788899998887765443321       11356899999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006812          468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS  547 (630)
Q Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  547 (630)
                      +.+|.+.|-+.-.       ++-.+.......|+.||...++++-|.+++-+.-         ...+....+..+|....
T Consensus       409 y~eaEelf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---------t~~e~fsLLqlIAn~CY  472 (557)
T KOG3785|consen  409 YVEAEELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---------TPSERFSLLQLIANDCY  472 (557)
T ss_pred             hHHHHHHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---------CchhHHHHHHHHHHHHH
Confidence            9999998876543       2323334456689999999999999988876541         22233345666777777


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHcCCC---chhHHHHHHHHHHHHHHHhcCCCCC
Q 006812          548 SMGSYTLAIEFQQRAIDAWESHGPS---AQDELREARRLLEQLKIKASGASIN  597 (630)
Q Consensus       548 ~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~  597 (630)
                      +.+++--|.+.|.    ..+.+.|.   =.|+.....-+|.++......+-+.
T Consensus       473 k~~eFyyaaKAFd----~lE~lDP~pEnWeGKRGACaG~f~~l~~~~~~~~p~  521 (557)
T KOG3785|consen  473 KANEFYYAAKAFD----ELEILDPTPENWEGKRGACAGLFRQLANHKTDPIPI  521 (557)
T ss_pred             HHHHHHHHHHhhh----HHHccCCCccccCCccchHHHHHHHHHcCCCCCCch
Confidence            7777765554443    34444442   1233334456666666555544333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1e-13  Score=124.41  Aligned_cols=300  Identities=15%  Similarity=0.100  Sum_probs=209.1

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .+.-....|..++...+|.+|+..|..|+++                .|..+..|.+.+.++...|+|++|.-..++.++
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----------------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r  111 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----------------CPDNASYYSNRAATLMMLGRFEEALGDARQSVR  111 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----------------CccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence            4444566788888999999999999999988                233356777888899999999999988888775


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE  315 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  315 (630)
                      +.        +.........+.++...++..+|...++..-                ++              ++...+.
T Consensus       112 ~k--------d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~----------------~~--------------~~anal~  153 (486)
T KOG0550|consen  112 LK--------DGFSKGQLREGQCHLALSDLIEAEEKLKSKQ----------------AY--------------KAANALP  153 (486)
T ss_pred             cC--------CCccccccchhhhhhhhHHHHHHHHHhhhhh----------------hh--------------HHhhhhh
Confidence            43        2224456667777777777777776665110                00              0111111


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812          316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA  395 (630)
Q Consensus       316 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  395 (630)
                      ....+.......|........-+.++...|++++|...--..++....    ...++...|.++...++.+.|+..|+++
T Consensus       154 ~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~----n~~al~vrg~~~yy~~~~~ka~~hf~qa  229 (486)
T KOG0550|consen  154 TLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT----NAEALYVRGLCLYYNDNADKAINHFQQA  229 (486)
T ss_pred             hhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc----hhHHHHhcccccccccchHHHHHHHhhh
Confidence            111112222222444445555566677777777777666665553322    2446666677777777777777777777


Q ss_pred             HHHHHhhcC----CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhH
Q 006812          396 CGILDKKET----ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQA  471 (630)
Q Consensus       396 ~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (630)
                      +.+......    ...+.....+..-|.-.++.|++.+|.+.|.+++.+.+..   ..+.+..|.+.+.+...+|+..+|
T Consensus       230 l~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~ea  306 (486)
T KOG0550|consen  230 LRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREA  306 (486)
T ss_pred             hccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhh
Confidence            665432110    0113455677778888999999999999999999984432   224467789999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          472 IPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       472 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                      +.-.+.++.+        ++....++...|.|+..+++|++|.+.|+++.+.-
T Consensus       307 isdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  307 ISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             hhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999984        47788899999999999999999999999999864

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=1.5e-10  Score=106.20  Aligned_cols=416  Identities=12%  Similarity=0.038  Sum_probs=289.6

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      ...|...|.--..++ ++..|...|++||.....          ....+...+.+-++......|..++++|+.+.    
T Consensus        73 ~~~WikYaqwEesq~-e~~RARSv~ERALdvd~r----------~itLWlkYae~Emknk~vNhARNv~dRAvt~l----  137 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQK-EIQRARSVFERALDVDYR----------NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL----  137 (677)
T ss_pred             HHHHHHHHHHHHhHH-HHHHHHHHHHHHHhcccc----------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc----
Confidence            356777776666676 888888888888865422          23356678888889999999999999999984    


Q ss_pred             hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 006812          192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPF  271 (630)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  271 (630)
                                  |..-..++....+-..+|+..-|...|++-++..+.         ..++......-...+..+.|...
T Consensus       138 ------------PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~---------eqaW~sfI~fElRykeieraR~I  196 (677)
T KOG1915|consen  138 ------------PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD---------EQAWLSFIKFELRYKEIERARSI  196 (677)
T ss_pred             ------------chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHhhHHHHHHHH
Confidence                        344466777777777889999999999987754321         24566666666777788888888


Q ss_pred             HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 006812          272 GLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI  351 (630)
Q Consensus       272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  351 (630)
                      |++-+-.        ||.+ ..+..-+..-...|+..-|...|+.|++.+.   ++..........|..-..+..++.|.
T Consensus       197 YerfV~~--------HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar  264 (677)
T KOG1915|consen  197 YERFVLV--------HPKV-SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERAR  264 (677)
T ss_pred             HHHHhee--------cccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876643        3332 3455667777788888888888888777643   34444455556666666777788887


Q ss_pred             HHHHHHHHHhhhc----------------------------------------chHHHHHHHHHHHHHHhhccHHHHHHH
Q 006812          352 NTLKGVVRQTEKE----------------------------------------SETRALVFISMGKALCNQEKFADAKRC  391 (630)
Q Consensus       352 ~~~~~~l~~~~~~----------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~  391 (630)
                      .+|+-++...+++                                        ++..-.+|...-.+-...|+.+.-.+.
T Consensus       265 ~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~  344 (677)
T KOG1915|consen  265 FIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRET  344 (677)
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHH
Confidence            7777777655432                                        111123455555566667888888888


Q ss_pred             HHHHHHHHHhhcCC-CcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChh
Q 006812          392 LEIACGILDKKETI-SPEEVADAYSEISMQ-YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVP  469 (630)
Q Consensus       392 ~~~a~~~~~~~~~~-~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  469 (630)
                      |++|+.-....... ........|.+.+.. -....+.+.+.+.|+.++++.+..   ...-+.+|...|....++.+..
T Consensus       345 yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~  421 (677)
T KOG1915|consen  345 YERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLT  421 (677)
T ss_pred             HHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccH
Confidence            88887643211000 001122233333321 234678899999999999964321   2223667888888889999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812          470 QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM  549 (630)
Q Consensus       470 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  549 (630)
                      .|...+-.|+...        |. .........+-.++++++....+|++.++        -.|+...++...|.+-..+
T Consensus       422 ~ARkiLG~AIG~c--------PK-~KlFk~YIelElqL~efDRcRkLYEkfle--------~~Pe~c~~W~kyaElE~~L  484 (677)
T KOG1915|consen  422 GARKILGNAIGKC--------PK-DKLFKGYIELELQLREFDRCRKLYEKFLE--------FSPENCYAWSKYAELETSL  484 (677)
T ss_pred             HHHHHHHHHhccC--------Cc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cChHhhHHHHHHHHHHHHh
Confidence            9999999888632        22 12334445566778899999999999988        6688999999999999999


Q ss_pred             CCHHHHHHHHHHHHHH---------HHHcC--CCchhHHHHHHHHHHHHHHHhcCCC
Q 006812          550 GSYTLAIEFQQRAIDA---------WESHG--PSAQDELREARRLLEQLKIKASGAS  595 (630)
Q Consensus       550 g~~~~A~~~~~~al~~---------~~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~  595 (630)
                      |+.+.|...|+-|+.-         ++.+-  .-..+.+++|+.+|+++..+..-..
T Consensus       485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k  541 (677)
T KOG1915|consen  485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK  541 (677)
T ss_pred             hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence            9999999999999842         22211  1256889999999999988865443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=7.1e-10  Score=101.87  Aligned_cols=433  Identities=12%  Similarity=0.050  Sum_probs=266.6

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      .|......|+..+..-.... ....|..++.+|+.+.+..          -..++.....-..+|+..-|.+.|++=+..
T Consensus       102 vd~r~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRV----------dqlWyKY~ymEE~LgNi~gaRqiferW~~w  170 (677)
T KOG1915|consen  102 VDYRNITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRV----------DQLWYKYIYMEEMLGNIAGARQIFERWMEW  170 (677)
T ss_pred             cccccchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchH----------HHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence            34455567787887777776 8888999999999887553          334444555555677777777777765543


Q ss_pred             HhH----------------------hhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Q 006812          187 LGR----------------------LEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEED  244 (630)
Q Consensus       187 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  244 (630)
                      -..                      +...- --.    +|. ...+...+..-.+.|+..-|...|++|++..     .+
T Consensus       171 ~P~eqaW~sfI~fElRykeieraR~IYerf-V~~----HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~-----~~  239 (677)
T KOG1915|consen  171 EPDEQAWLSFIKFELRYKEIERARSIYERF-VLV----HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFL-----GD  239 (677)
T ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-hee----ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----hh
Confidence            100                      00000 000    111 1233444555555566666666666665543     22


Q ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHH
Q 006812          245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE---HQKALEQNELSQKVL  321 (630)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~  321 (630)
                      +......+...|..-..+..++.|.-+|+-|++..++    +..  -..+......-.+-|+   .+.++-.= +-.+.-
T Consensus       240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk----~ra--eeL~k~~~~fEKqfGd~~gIEd~Iv~K-Rk~qYE  312 (677)
T KOG1915|consen  240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK----GRA--EELYKKYTAFEKQFGDKEGIEDAIVGK-RKFQYE  312 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----ccH--HHHHHHHHHHHHHhcchhhhHHHHhhh-hhhHHH
Confidence            2333344444555555555666666666666554443    111  0111111111112222   22222111 111112


Q ss_pred             HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH---HHHHHHHHHHH---HhhccHHHHHHHHHHH
Q 006812          322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR---ALVFISMGKAL---CNQEKFADAKRCLEIA  395 (630)
Q Consensus       322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~~~~~la~~~---~~~~~~~~A~~~~~~a  395 (630)
                      .....+|..-.+++..-.+-...|+.+.-.+.|++++...+......   -.+|..+-.++   ....+.+.+.+.|+.+
T Consensus       313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~  392 (677)
T KOG1915|consen  313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC  392 (677)
T ss_pred             HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            22334566667777777888888999999999999998665533221   11222222222   3467888999999999


Q ss_pred             HHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHH
Q 006812          396 CGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYL  475 (630)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (630)
                      +++.....    -..+..|...|....++.+...|.+.+-.|+..++        ...++-....+-.++++++....+|
T Consensus       393 l~lIPHkk----FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP--------K~KlFk~YIelElqL~efDRcRkLY  460 (677)
T KOG1915|consen  393 LDLIPHKK----FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP--------KDKLFKGYIELELQLREFDRCRKLY  460 (677)
T ss_pred             HhhcCccc----chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC--------chhHHHHHHHHHHHHhhHHHHHHHH
Confidence            99775432    46788999999999999999999999999887533        2346666677788889999999999


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 006812          476 ESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA  555 (630)
Q Consensus       476 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  555 (630)
                      ++-++        -.|....++...|.+-..+|+.+.|...|+-|+.--.    -+.|.+  .+-.....-...|.+++|
T Consensus       461 Ekfle--------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpel--lwkaYIdFEi~~~E~eka  526 (677)
T KOG1915|consen  461 EKFLE--------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMPEL--LWKAYIDFEIEEGEFEKA  526 (677)
T ss_pred             HHHHh--------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHH--HHHHhhhhhhhcchHHHH
Confidence            99988        4577888999999999999999999999998876211    133433  333445556778999999


Q ss_pred             HHHHHHHHHHHH------------Hc-CCC-----------chhHHHHHHHHHHHHHHHhcCC
Q 006812          556 IEFQQRAIDAWE------------SH-GPS-----------AQDELREARRLLEQLKIKASGA  594 (630)
Q Consensus       556 ~~~~~~al~~~~------------~~-~~~-----------~~~~~~~A~~~~~~~~~~~~~~  594 (630)
                      ..+|++.++.-+            .. ...           .......|+.+|+.+.......
T Consensus       527 R~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~  589 (677)
T KOG1915|consen  527 RALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES  589 (677)
T ss_pred             HHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence            999999885321            10 111           1236778888888876554444

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=5.1e-09  Score=96.64  Aligned_cols=424  Identities=13%  Similarity=0.082  Sum_probs=270.8

Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhcc-ChHHHHHHHHHHHHHHh
Q 006812          110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFK-RFSDSLGYLSKANRMLG  188 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~  188 (630)
                      -.+...+.+|..++.-.++++.|...+++|..+....  +.-. .....+...++.+|.... .+..|...+.+++++.+
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~i--p~fy-dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq  120 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSI--PSFY-DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ  120 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccc--ccHH-hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence            3557788899888776669999999999999988766  3221 134456677899998877 89999999999999954


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------HhccchHHHHH
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL------------------ILEEDSRELGV  250 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~~~~~  250 (630)
                      ..            .-.--...+.|+.++.-..++..|++.+.-.-+-...                  ....+..++..
T Consensus       121 ~~------------p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~  188 (629)
T KOG2300|consen  121 SV------------PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEK  188 (629)
T ss_pred             CC------------chhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            43            1233466788999999999999988774321111000                  00112222223


Q ss_pred             HHHHHHHHHHHh-cCH--HHHHHHHHHHHHH---------------------H------------hhhcCCCCHHHH---
Q 006812          251 ANRDLAEAFVAV-LNF--KEALPFGLKALEI---------------------H------------KKGLGHNSVEVA---  291 (630)
Q Consensus       251 ~~~~la~~~~~~-g~~--~~A~~~~~~al~~---------------------~------------~~~~~~~~~~~~---  291 (630)
                      +....|.+.... ++.  .+.++.|--.+.+                     .            +++++...+...   
T Consensus       189 ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wl  268 (629)
T KOG2300|consen  189 LLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWL  268 (629)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhc
Confidence            333333332211 110  1122221111110                     0            011122222111   


Q ss_pred             -----HHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHcCCChhHH--------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          292 -----HDRRLLGVI--YSGLEEHQKALEQNELSQKVLKTWGLSSELL--------RAEIDAANMQIALGKFEEAINTLKG  356 (630)
Q Consensus       292 -----~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~  356 (630)
                           .++..+-.+  -...|-+++|.++-++++....+....+...        ..+-.+..+-.-.|++.+|++....
T Consensus       269 pkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~d  348 (629)
T KOG2300|consen  269 PKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVD  348 (629)
T ss_pred             cHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                 111111111  1235778888888888888776665544222        2333556667788999999999988


Q ss_pred             HHHHhhhcch------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812          357 VVRQTEKESE------TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA  430 (630)
Q Consensus       357 ~l~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  430 (630)
                      +.+.....+.      ..+.....+|......+.++.|+..|..+.+.....     .-.+.+-.++|..|...|+-+.-
T Consensus       349 m~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~  423 (629)
T KOG2300|consen  349 MKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDL  423 (629)
T ss_pred             HHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHH
Confidence            8877655432      235567778888888899999999999998887554     23556667899999998875543


Q ss_pred             HHHHHHHHHHHHhCCCCCC----chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 006812          431 ISLLKRTLALLEKLPQAQH----SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE  506 (630)
Q Consensus       431 ~~~~~~al~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  506 (630)
                      .+.    ++..........    ....+++..|...+.++++.||...+.+.+++....  +...-.+..+..||.+...
T Consensus       424 y~~----ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~ls  497 (629)
T KOG2300|consen  424 YKA----LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLS  497 (629)
T ss_pred             HHH----HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHH
Confidence            333    332111100000    113456677888889999999999999999976332  2344556678889999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 006812          507 LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS--YTLAIEFQQR  561 (630)
Q Consensus       507 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~  561 (630)
                      .|+..++....+-++.+..+..  +.+-.......+-.+|...|+  .+...+.|.+
T Consensus       498 lgn~~es~nmvrpamqlAkKi~--Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  498 LGNTVESRNMVRPAMQLAKKIP--DIPVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             hcchHHHHhccchHHHHHhcCC--CchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            9999999999999999988763  556555566667788888888  6666666665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.50  E-value=4.9e-12  Score=114.96  Aligned_cols=181  Identities=17%  Similarity=0.077  Sum_probs=145.4

Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          203 KPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                      .+.....++.+|..+...|++++|+..|++++...     ++++....++..+|.++...|++++|+..++++++..+  
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p--  101 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP--  101 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--
Confidence            34556788899999999999999999999988654     45566667899999999999999999999999998765  


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHHHHHHH
Q 006812          283 LGHNSVEVAHDRRLLGVIYSGL--------EEHQKALEQNELSQKVLKTWGLSSELL--------------RAEIDAANM  340 (630)
Q Consensus       283 ~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~la~~  340 (630)
                         +++....+++.+|.++...        |++++|+..+++++....   ..+...              .....+|.+
T Consensus       102 ---~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302       102 ---NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP---NSEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             ---CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3445556788889998876        889999999998776521   111111              122467899


Q ss_pred             HHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812          341 QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG  397 (630)
Q Consensus       341 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  397 (630)
                      |...|++.+|+..+++++...+.. +....++..+|.++...|++++|..+++....
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYPDT-PATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999999999999987654 33467999999999999999999998876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.48  E-value=2.5e-11  Score=112.39  Aligned_cols=224  Identities=19%  Similarity=0.197  Sum_probs=167.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812          205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG  284 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  284 (630)
                      ..+..|..-|.+|...|++++|...|.++.++..+.  .+....+.++...+.+|... ++++|+.+|+++++++.... 
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-  108 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence            334566678888999999999999999999998875  55566788888888888776 99999999999999998642 


Q ss_pred             CCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          285 HNSVEVAHDRRLLGVIYSGL-EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       285 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                       .....+.++..+|.+|... |++++|+++|++|..++...+.......++..+|.++...|+|++|++.|+++......
T Consensus       109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence             3446788999999999999 99999999999999999998876778889999999999999999999999999876533


Q ss_pred             cc---hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q 006812          364 ES---ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES--MNEFETAISLLKR  436 (630)
Q Consensus       364 ~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~  436 (630)
                      .+   ......+...+.++...|++..|...+++.......-   ...........+-..+..  ...+++|+.-|..
T Consensus       188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~  262 (282)
T PF14938_consen  188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS  262 (282)
T ss_dssp             HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred             ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence            22   2334456777889999999999999888865443211   112334455555555543  2345555544443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.46  E-value=1.3e-11  Score=114.24  Aligned_cols=227  Identities=16%  Similarity=0.101  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--h
Q 006812          289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--E  366 (630)
Q Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~  366 (630)
                      ..+..|...|..|...|++++|.+.|.++..+....+........+...+.+|... ++++|+.++++++.++....  .
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~  111 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence            44556666788889999999999999999999888777788888888888888666 99999999999999886653  4


Q ss_pred             HHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812          367 TRALVFISMGKALCNQ-EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP  445 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  445 (630)
                      ..+.++..+|.+|... |++++|+++|++|.+++....  .+.....++..+|.++...|+|++|++.|++.........
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence            5588999999999999 999999999999999998765  3346678889999999999999999999999877432221


Q ss_pred             CCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChhHHHHHHHHHH
Q 006812          446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE--LDRPQSAAQVFAFAK  521 (630)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al  521 (630)
                      .........+...+.+++..|++..|...+++........   .+.........|-.++..  ...+++|+.-|....
T Consensus       190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence            1111112345677889999999999999988876632111   233445556666666653  234566666665543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.46  E-value=7.9e-12  Score=113.58  Aligned_cols=177  Identities=16%  Similarity=0.114  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                      .+..++.+|..+...|++++|+..+++++....     ..+....++..+|.++...|++++|+..++++++..+.    
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----  102 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-----FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN----  102 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC----
Confidence            356788888888899999999998888776542     22445578899999999999999999999999986432    


Q ss_pred             CCch-hHHHHHHHHHHHHc--------CChhhHHHHHHHHHHHHHHhcCCCCccHHHH--------------HHHHHHHH
Q 006812          448 QHSE-GSVSARIGWLLLLT--------GKVPQAIPYLESAAERLKESFGPKHFGVGYI--------------YNNLGAAY  504 (630)
Q Consensus       448 ~~~~-~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~l~~~~  504 (630)
                       ++. ..+++.+|.++...        |++++|+..+++++...     ++++....+              ...+|.+|
T Consensus       103 -~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~  176 (235)
T TIGR03302       103 -HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARFY  176 (235)
T ss_pred             -CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222 34678889988876        78999999999998742     232222212              24678999


Q ss_pred             HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          505 LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       505 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      ...|++.+|+..|++++...     +++|....++..+|.++...|++++|..+++....
T Consensus       177 ~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       177 LKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999854     24567778999999999999999999998887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.46  E-value=7.1e-10  Score=109.13  Aligned_cols=364  Identities=15%  Similarity=0.043  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      ...++....++...| ++++|++.+++.....          ++....+...|.++..+|++++|...|...++.     
T Consensus         4 SE~lLY~~~il~e~g-~~~~AL~~L~~~~~~I----------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----   67 (517)
T PF12569_consen    4 SELLLYKNSILEEAG-DYEEALEHLEKNEKQI----------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----   67 (517)
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHhhhhhC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Confidence            345566777888888 9999999997744332          345667788999999999999999999999887     


Q ss_pred             hcCCCCCCccchhhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812          192 EEGLGGSVEDIKPIMHAVHLELANVKTAMG-----RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK  266 (630)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (630)
                                 .|.....+..+..+.....     +.+.-...|++.....+.         +.+-..+...+..-..|.
T Consensus        68 -----------NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~---------s~~~~rl~L~~~~g~~F~  127 (517)
T PF12569_consen   68 -----------NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR---------SDAPRRLPLDFLEGDEFK  127 (517)
T ss_pred             -----------CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc---------ccchhHhhcccCCHHHHH
Confidence                       2222344445555553322     334445555543322211         111111222222212233


Q ss_pred             HHHH-HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC----------CC-hhHHHHH
Q 006812          267 EALP-FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG----------LS-SELLRAE  334 (630)
Q Consensus       267 ~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~-~~~~~~~  334 (630)
                      .... ++...+.       ..-   ..+..++-.+|....+..-....+......+...+          .. ....+++
T Consensus       128 ~~~~~yl~~~l~-------Kgv---PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~  197 (517)
T PF12569_consen  128 ERLDEYLRPQLR-------KGV---PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTL  197 (517)
T ss_pred             HHHHHHHHHHHh-------cCC---chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHH
Confidence            2222 2222221       122   23344555555543333322233332222222111          11 2245788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY  414 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  414 (630)
                      +.+|..|...|++++|+.+++++++.    .|.....|...|.++...|++.+|..+++.|..+...        .-.+-
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~--------DRyiN  265 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA--------DRYIN  265 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh--------hHHHH
Confidence            89999999999999999999999994    4555679999999999999999999999998876532        22344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch------hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812          415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE------GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP  488 (630)
Q Consensus       415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (630)
                      ...+..+.+.|+.++|.+.+..-.    +.......+      .+.....|.+|.+.|++..|+..|..+.+++......
T Consensus       266 sK~aKy~LRa~~~e~A~~~~~~Ft----r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D  341 (517)
T PF12569_consen  266 SKCAKYLLRAGRIEEAEKTASLFT----REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED  341 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhc----CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence            556778889999999987765432    221111111      1222567999999999999999999999998876432


Q ss_pred             CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 006812          489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS  551 (630)
Q Consensus       489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  551 (630)
                      .- +   .+.    -..+.|-+    ..|-..+.....+.  .||....+......+|..+-+
T Consensus       342 Qf-D---FH~----Yc~RK~t~----r~Y~~~L~~ed~l~--~~~~y~raa~~ai~iYl~l~d  390 (517)
T PF12569_consen  342 QF-D---FHS----YCLRKMTL----RAYVDMLRWEDKLR--SHPFYRRAAKGAIRIYLELHD  390 (517)
T ss_pred             cc-c---HHH----HHHhhccH----HHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHhc
Confidence            21 1   110    11222222    23333444433333  567777777777777766654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.43  E-value=6.7e-10  Score=109.30  Aligned_cols=292  Identities=11%  Similarity=0.067  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      +++.....++...|++++|++++++....        -.+....+...|.++..+|++++|...|...++.      +|+
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r------NPd   70 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR------NPD   70 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCC
Confidence            45566678889999999999998764432        2344566778899999999999999999877765      666


Q ss_pred             HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhhhcch----------------------------HHHHHHHHHH
Q 006812          330 LLRAEIDAANMQIALG-----KFEEAINTLKGVVRQTEKESE----------------------------TRALVFISMG  376 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~~~~~~----------------------------~~~~~~~~la  376 (630)
                      ....+..+..+.....     ..+.-..+|++.....+....                            .++..+.++-
T Consensus        71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk  150 (517)
T PF12569_consen   71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLK  150 (517)
T ss_pred             cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            6766766666653222     455566667665554433110                            0112333343


Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHhhc---------CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          377 KALCNQEKFADAKRCLEIACGILDKKE---------TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       377 ~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                      .+|....+..-....+...........         ...+.....+++.+|..|...|++++|+++++++++.       
T Consensus       151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-------  223 (517)
T PF12569_consen  151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-------  223 (517)
T ss_pred             HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------
Confidence            444433222222222332222221111         1122334678899999999999999999999999985       


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                      .+..+..+...|.++.+.|++.+|.+.++.|-.+        +...-.+-...+..+.+.|+.++|...+.....-..  
T Consensus       224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--  293 (517)
T PF12569_consen  224 TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV--  293 (517)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--
Confidence            2223678899999999999999999999999873        222233445667788899999999988766533110  


Q ss_pred             cCCCCHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          528 LGPHHADSI---EACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       528 ~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                      .+..+....   ......|.+|.+.|++..|+..|..+.+++..+..+
T Consensus       294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D  341 (517)
T PF12569_consen  294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED  341 (517)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence            011122222   233456999999999999999999999999997766

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.41  E-value=3.2e-09  Score=101.44  Aligned_cols=298  Identities=14%  Similarity=0.073  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc---------------------------CCCCHHHH-------
Q 006812          246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL---------------------------GHNSVEVA-------  291 (630)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~-------  291 (630)
                      ......+..||..|...|.+++|...|++++...-...                           +.+..+..       
T Consensus       245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a  324 (835)
T KOG2047|consen  245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA  324 (835)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence            34577889999999999999999999999875221100                           00000000       


Q ss_pred             --HHH---------------------HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 006812          292 --HDR---------------------RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE  348 (630)
Q Consensus       292 --~~~---------------------~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  348 (630)
                        ..+                     ..+-.+-...|+..+-+..|.+|++...-....-.....+..+|..|...|+.+
T Consensus       325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence              000                     001122223566677777777776653322222334567788999999999999


Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-----hcCCCcH-----HHHHHHHHHH
Q 006812          349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDK-----KETISPE-----EVADAYSEIS  418 (630)
Q Consensus       349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~-----~~~~~~~~la  418 (630)
                      .|..+|+++....-+.....+.+|...|..-....+++.|.++++.|..+-..     ..+..++     ....+|..++
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~  484 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA  484 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence            99999999998655556677889999999999999999999999988654322     1111111     2245666777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 006812          419 MQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYN  498 (630)
Q Consensus       419 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  498 (630)
                      .+....|-++.-...|++.+++.-       ....+..+.|..+....-++++.+.|++.+.++      ..|...+.|+
T Consensus       485 DleEs~gtfestk~vYdriidLri-------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~  551 (835)
T KOG2047|consen  485 DLEESLGTFESTKAVYDRIIDLRI-------ATPQIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWN  551 (835)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHH
Confidence            777788888888888888887621       123466788888888888999999999988865      3455554444


Q ss_pred             H---HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          499 N---LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEA-CQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       499 ~---l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                      .   ....-+..-+.+.|..+|++|++.       ..|..+.. +...|..-..-|--..|+..|++|.
T Consensus       552 tYLtkfi~rygg~klEraRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  552 TYLTKFIKRYGGTKLERARDLFEQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3   222233345688899999999984       33666644 4445777777888889999998874

>PLN02789 farnesyltranstransferase

Probab=99.40  E-value=3e-10  Score=105.42  Aligned_cols=216  Identities=11%  Similarity=0.049  Sum_probs=167.9

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812          293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG-KFEEAINTLKGVVRQTEKESETRALV  371 (630)
Q Consensus       293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~  371 (630)
                      ++..+-.++...+.+++|+..+.+++.+      +|....++...+.++..+| ++++++..+.+++...+++    ..+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn----yqa  108 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN----YQI  108 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc----hHH
Confidence            3333344455677889999999999987      8888999999999999998 6899999999999876555    447


Q ss_pred             HHHHHHHHHhhccH--HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC
Q 006812          372 FISMGKALCNQEKF--ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH  449 (630)
Q Consensus       372 ~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  449 (630)
                      |...+.++...|+.  ++++.++++++++.        |....+|...+.++...|++++|++++.+++++     +.  
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d~--  173 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-----DV--  173 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----CC--
Confidence            88888888888874  67788888888765        566689999999999999999999999999986     22  


Q ss_pred             chhHHHHHHHHHHHHc---CCh----hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHH
Q 006812          450 SEGSVSARIGWLLLLT---GKV----PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFA  518 (630)
Q Consensus       450 ~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~  518 (630)
                      ....+|+..+.+....   |.+    ++++.+..+++.+        .|....+++.++.++..    .++..+|.+.+.
T Consensus       174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~  245 (320)
T PLN02789        174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL  245 (320)
T ss_pred             CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence            2345888888887766   333    4677777788873        46666688899999987    455677888887


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812          519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSM  549 (630)
Q Consensus       519 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  549 (630)
                      +++.        ..+....++..|+.+|...
T Consensus       246 ~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        246 EVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             Hhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            7665        3355557888899999753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.40  E-value=1.6e-08  Score=91.63  Aligned_cols=302  Identities=14%  Similarity=0.053  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812          210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE  289 (630)
Q Consensus       210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  289 (630)
                      ...-|..-...|+|.+|++...++-+        ..+.-..++..-+..-...|+++.|-.+..++-+...      + .
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae--------~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~------~-~  151 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAE--------HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG------D-D  151 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhh--------cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC------C-c
Confidence            33456666778999999998887542        2233355666778888999999999999988876422      1 2


Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812          290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                      ........+.+....|+++.|..-..++++.      .|....++.-...+|...|+|.+...+..+..+..--+++. .
T Consensus       152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e-~  224 (400)
T COG3071         152 TLAVELTRARLLLNRRDYPAARENVDQLLEM------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE-A  224 (400)
T ss_pred             hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH-H
Confidence            2344567788999999999999988877775      67777888888999999999999998888766533222222 1


Q ss_pred             HHHHHHHHH--HHhhccHHHHH---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812          370 LVFISMGKA--LCNQEKFADAK---RCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       370 ~~~~~la~~--~~~~~~~~~A~---~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  444 (630)
                      .-+-+.+..  +....+-..+.   .+++..-... +    ++|   .....++.-+...|+.++|.+..+.+++-    
T Consensus       225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l-r----~~p---~l~~~~a~~li~l~~~~~A~~~i~~~Lk~----  292 (400)
T COG3071         225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL-R----NDP---ELVVAYAERLIRLGDHDEAQEIIEDALKR----  292 (400)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh-h----cCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            122222211  11111211122   2222211111 1    112   34456777789999999999999998873    


Q ss_pred             CCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          445 PQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                        ...+  .....++  ...-+++..=++..++.+.        .||+.+..+..||..+.+.+.|.+|..+|+.+++..
T Consensus       293 --~~D~--~L~~~~~--~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~  358 (400)
T COG3071         293 --QWDP--RLCRLIP--RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR  358 (400)
T ss_pred             --ccCh--hHHHHHh--hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence              1111  1111112  2345666666777777666        466666889999999999999999999999998843


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       525 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                              | .+..+..+|.++.+.|+..+|.+.+++++.....
T Consensus       359 --------~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~  393 (400)
T COG3071         359 --------P-SASDYAELADALDQLGEPEEAEQVRREALLLTRQ  393 (400)
T ss_pred             --------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence                    2 2357889999999999999999999999955443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.36  E-value=1.6e-08  Score=96.77  Aligned_cols=411  Identities=13%  Similarity=0.070  Sum_probs=245.1

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhcc-------C------hHH
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFK-------R------FSD  175 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-------~------~~~  175 (630)
                      ...+..|..++..|.+.| .+++|...|+++++.....  .+-.....+.+.+.-..+...++       +      .+-
T Consensus       245 Dq~g~Lw~SLAdYYIr~g-~~ekarDvyeeai~~v~tv--rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~  321 (835)
T KOG2047|consen  245 DQLGFLWCSLADYYIRSG-LFEKARDVYEEAIQTVMTV--RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL  321 (835)
T ss_pred             HHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhheeh--hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence            456778999999999999 9999999999998765332  11100001111111111111111       1      111


Q ss_pred             HHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 006812          176 SLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDL  255 (630)
Q Consensus       176 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  255 (630)
                      ....|+..+....-.....+-..+    |.....  .+-.+-...|+..+-+..|.+|+........  .-.....+..+
T Consensus       322 ~~a~~e~lm~rr~~~lNsVlLRQn----~~nV~e--W~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~f  393 (835)
T KOG2047|consen  322 HMARFESLMNRRPLLLNSVLLRQN----PHNVEE--WHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEF  393 (835)
T ss_pred             HHHHHHHHHhccchHHHHHHHhcC----CccHHH--HHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHH
Confidence            222233333221111110000000    011111  2334455677888888888888754432211  12336778899


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-----HcCCC-hh
Q 006812          256 AEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK-----TWGLS-SE  329 (630)
Q Consensus       256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~-~~  329 (630)
                      |..|...|+.+.|...|+++....-.    .-.+++.+|..-|..-....+++.|+...+.|..+-.     ..... |.
T Consensus       394 aklYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv  469 (835)
T KOG2047|consen  394 AKLYENNGDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV  469 (835)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence            99999999999999999999874221    2336678888888888888999999998888765411     11111 22


Q ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhc
Q 006812          330 ------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE  403 (630)
Q Consensus       330 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  403 (630)
                            ...++...++.....|-++.-...|++++++.--.    +....+.|..+....-++++.+.|++.+.+++-  
T Consensus       470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT----Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~--  543 (835)
T KOG2047|consen  470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT----PQIIINYAMFLEEHKYFEESFKAYERGISLFKW--  543 (835)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC--
Confidence                  23445556777778888888888888888754333    336677788888888899999999998888742  


Q ss_pred             CCCcHHHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchh-HHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812          404 TISPEEVADAYSE---ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG-SVSARIGWLLLLTGKVPQAIPYLESAA  479 (630)
Q Consensus       404 ~~~~~~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  479 (630)
                          |.....|+.   ...--...-+.+.|..+|++|++.++      +..+ .++...+.+-..-|--..|+..|++|-
T Consensus       544 ----p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  544 ----PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             ----ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                344444433   33333334578899999999998432      1112 344556666666788888888888765


Q ss_pred             HHHHHhcCCCCccHHHHHHHH--HHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 006812          480 ERLKESFGPKHFGVGYIYNNL--GAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIE  557 (630)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  557 (630)
                      .-       .++......+++  ..+-...| ...-.+.|++|++..      .+......+...|..-.+.|..+.|..
T Consensus       614 ~~-------v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRARa  679 (835)
T KOG2047|consen  614 SA-------VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRARA  679 (835)
T ss_pred             hc-------CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            41       222211111111  11111112 233456777777753      233445667777888888888888888


Q ss_pred             HHHHHHH
Q 006812          558 FQQRAID  564 (630)
Q Consensus       558 ~~~~al~  564 (630)
                      .|.-+-+
T Consensus       680 Iya~~sq  686 (835)
T KOG2047|consen  680 IYAHGSQ  686 (835)
T ss_pred             HHHhhhh
Confidence            8776643

>PLN02789 farnesyltranstransferase

Probab=99.36  E-value=1.5e-09  Score=100.82  Aligned_cols=209  Identities=8%  Similarity=-0.012  Sum_probs=163.8

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812          258 AFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE-EHQKALEQNELSQKVLKTWGLSSELLRAEID  336 (630)
Q Consensus       258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  336 (630)
                      ++...+++++|+..+.+++.+.+        ....+++..+.++..+| ++++++.++++++..      +|....++..
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP--------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------npknyqaW~~  111 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNP--------GNYTVWHFRRLCLEALDADLEEELDFAEDVAED------NPKNYQIWHH  111 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCc--------hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------CCcchHHhHH
Confidence            34456788999999999998644        44577888899999988 689999999998886      7778888999


Q ss_pred             HHHHHHHcCCH--HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812          337 AANMQIALGKF--EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY  414 (630)
Q Consensus       337 la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  414 (630)
                      .+.++...|+.  ++++.++.++++..+++    ..+|...+.++...|++++++++++++++..        +....+|
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN----y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------~~N~sAW  179 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKN----YHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------VRNNSAW  179 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------CCchhHH
Confidence            99999888874  78899999999866555    4589999999999999999999999998875        3455788


Q ss_pred             HHHHHHHHHc---CCH----HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHH
Q 006812          415 SEISMQYESM---NEF----ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLK  483 (630)
Q Consensus       415 ~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  483 (630)
                      +..+.+....   |.+    ++++.+..+++.+.     +.  +..+|..++.++..    .++..+|.+.+.+++.   
T Consensus       180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-----P~--N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~---  249 (320)
T PLN02789        180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-----PR--NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS---  249 (320)
T ss_pred             HHHHHHHHhccccccccccHHHHHHHHHHHHHhC-----CC--CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc---
Confidence            8888887765   333    46788888888762     22  23588888888877    4556778888877665   


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHc
Q 006812          484 ESFGPKHFGVGYIYNNLGAAYLEL  507 (630)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~~~~~~~  507 (630)
                           ..+....++..|+.+|...
T Consensus       250 -----~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        250 -----KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             -----ccCCcHHHHHHHHHHHHhh
Confidence                 3466667888899999763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.34  E-value=8.7e-12  Score=90.45  Aligned_cols=78  Identities=36%  Similarity=0.581  Sum_probs=71.8

Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      ||..+.++.++|.+|..+|++++|+.+|++++++ .+..++.++.++.++.++|.+|..+|++++|+++++++++++++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            6788999999999999999999999999999999 77778888899999999999999999999999999999999864

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=1.7e-08  Score=87.42  Aligned_cols=216  Identities=11%  Similarity=0.065  Sum_probs=150.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      +|+.||++...-.+.          +|..-..+..+|.||+...+|..|..+|++.-.+                .|...
T Consensus        25 ry~DaI~~l~s~~Er----------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql----------------~P~~~   78 (459)
T KOG4340|consen   25 RYADAIQLLGSELER----------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL----------------HPELE   78 (459)
T ss_pred             hHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------ChHHH
Confidence            677777776553322          2333445678999999999999999999988776                44555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      ...+.-+..+++.+.+.+|+.......        .+......++..-+-+.+..+++..+..+.++.       .+   
T Consensus        79 qYrlY~AQSLY~A~i~ADALrV~~~~~--------D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~---  140 (459)
T KOG4340|consen   79 QYRLYQAQSLYKACIYADALRVAFLLL--------DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PS---  140 (459)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhc--------CCHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cC---
Confidence            556667888899999999988766533        222333455555666777778887776655442       11   


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch-
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE-  366 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-  366 (630)
                      ...+....+.|.+.++.|+++.|++-|+.|++.      .--....-++++.++++.|+++.|+++..+.++..-+++| 
T Consensus       141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqv------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE  214 (459)
T KOG4340|consen  141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQV------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE  214 (459)
T ss_pred             CCccchhccchheeeccccHHHHHHHHHHHHhh------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence            133566778899999999999999999888776      2222334567888999999999999998888775533221 


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812          367 ------------------------TRALVFISMGKALCNQEKFADAKRCLE  393 (630)
Q Consensus       367 ------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~  393 (630)
                                              ....+++..+.++++.++++.|.+.+.
T Consensus       215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                                    123455566778888888888876554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.31  E-value=3.3e-08  Score=97.21  Aligned_cols=337  Identities=15%  Similarity=0.126  Sum_probs=210.8

Q ss_pred             HHHHhhHHHhhccChHHHHHHHHH--------HHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812          159 CLQVMGSANYSFKRFSDSLGYLSK--------ANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHL  230 (630)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~--------al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (630)
                      .|.+++....+..+.+-|.-++-.        |+.-..+..++           .    -...+.+-..+|..++|+.+|
T Consensus       759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e-----------~----eakvAvLAieLgMlEeA~~lY  823 (1416)
T KOG3617|consen  759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE-----------D----EAKVAVLAIELGMLEEALILY  823 (1416)
T ss_pred             HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc-----------h----hhHHHHHHHHHhhHHHHHHHH
Confidence            456777777777777766655422        22221111110           1    114566677889999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHH
Q 006812          231 QKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKA  310 (630)
Q Consensus       231 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  310 (630)
                      .++-.                +-.|-..|...|.+++|.+..+.-          +...+-.+|++.+..+...++.+.|
T Consensus       824 r~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  824 RQCKR----------------YDLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHHHH----------------HHHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHH
Confidence            88542                334556788888888887765431          3334567788999999999999999


Q ss_pred             HHHHHHHH----HHHHHcCCChhHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 006812          311 LEQNELSQ----KVLKTWGLSSELL----------RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMG  376 (630)
Q Consensus       311 ~~~~~~a~----~~~~~~~~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la  376 (630)
                      +++|+++-    ++.+-+.+.|...          ..+...|......|+.+.|+.+|..+-            -|+.+.
T Consensus       878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------------D~fs~V  945 (1416)
T KOG3617|consen  878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------------DYFSMV  945 (1416)
T ss_pred             HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------------hhhhhe
Confidence            99999753    3333333333322          344456777788888888888887743            466677


Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHhCCCCCCc
Q 006812          377 KALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA------LLEKLPQAQHS  450 (630)
Q Consensus       377 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~  450 (630)
                      .+.+-+|+.++|....++.             ....+.+.+|+.|...|++.+|+.+|.+|-.      ++++..-.+..
T Consensus       946 rI~C~qGk~~kAa~iA~es-------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen  946 RIKCIQGKTDKAARIAEES-------------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred             eeEeeccCchHHHHHHHhc-------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            7777888888877665542             2224667889999999999999988876544      33322100000


Q ss_pred             h-h------HHHHHHHHHHHHcC-ChhhHHHHHHH------------------HHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812          451 E-G------SVSARIGWLLLLTG-KVPQAIPYLES------------------AAERLKESFGPKHFGVGYIYNNLGAAY  504 (630)
Q Consensus       451 ~-~------~~~~~la~~~~~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~~l~~~~  504 (630)
                      . .      .-....+..|...| +.+.|..+|.+                  ++++..+-+.+.  ..+..+..-+..+
T Consensus      1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~--sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG--SDPKLLRRCADFF 1090 (1416)
T ss_pred             HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC--CCHHHHHHHHHHH
Confidence            0 0      00112233444444 55555555543                  233333323222  2344667778888


Q ss_pred             HHcCChhHHHHHH------HHHHHHHHHh-----------cC------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812          505 LELDRPQSAAQVF------AFAKDIMDVS-----------LG------PHHADSIEACQNLSKAYSSMGSYTLAIEFQQR  561 (630)
Q Consensus       505 ~~~g~~~~A~~~~------~~al~~~~~~-----------~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  561 (630)
                      ....+|++|..++      +.|+.++...           ..      ++......++..+|.++.++|.|..|.+-|.+
T Consensus      1091 ~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence            8999999998765      4555554421           11      11223346888999999999999999999988


Q ss_pred             HH
Q 006812          562 AI  563 (630)
Q Consensus       562 al  563 (630)
                      |=
T Consensus      1171 AG 1172 (1416)
T KOG3617|consen 1171 AG 1172 (1416)
T ss_pred             hh
Confidence            73

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=3.3e-07  Score=85.02  Aligned_cols=426  Identities=14%  Similarity=0.058  Sum_probs=268.8

Q ss_pred             HHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHh-hccChHHHHHHHHHHHHHHhH
Q 006812          112 GLVGLKIALKLDQEG-GDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANY-SFKRFSDSLGYLSKANRMLGR  189 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~  189 (630)
                      +.+++.++..+...+ -+..++|.+.+........       ....+.+...+|.+++ ...+++.|...+++|..+.+.
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is-------~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~   79 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQIS-------FLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS   79 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence            455666676655554 2456677777665443221       2346677788887765 578899999999999999766


Q ss_pred             hhhcCCCCCCccchhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHH
Q 006812          190 LEEEGLGGSVEDIKPIMHAVHLELANVKTAMG-RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA  268 (630)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  268 (630)
                      +..-         ..........|+.+|.... .+..|...+++++++.+..    .......+..|+.++.-..++..|
T Consensus        80 ip~f---------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA  146 (629)
T KOG2300|consen   80 IPSF---------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSA  146 (629)
T ss_pred             cccH---------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhH
Confidence            5432         1234566778899998887 8889999999999887543    234467788899999999999888


Q ss_pred             HHHHHHH------------------------------------HHHHhhhcCCC--CH---HHH-HHHHHHHH-HHhccc
Q 006812          269 LPFGLKA------------------------------------LEIHKKGLGHN--SV---EVA-HDRRLLGV-IYSGLE  305 (630)
Q Consensus       269 ~~~~~~a------------------------------------l~~~~~~~~~~--~~---~~~-~~~~~la~-~~~~~g  305 (630)
                      .+.+.-.                                    +.....+....  ++   +.. ..|..+-. .|...|
T Consensus       147 ~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~g  226 (629)
T KOG2300|consen  147 LELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPG  226 (629)
T ss_pred             HHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            8764211                                    01111110000  00   111 11122222 234456


Q ss_pred             cHHHHHHHHHHHHHHHHHc------------CCChhH---------HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHhh
Q 006812          306 EHQKALEQNELSQKVLKTW------------GLSSEL---------LRAEIDAANM--QIALGKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       306 ~~~~A~~~~~~a~~~~~~~------------~~~~~~---------~~~~~~la~~--~~~~g~~~~A~~~~~~~l~~~~  362 (630)
                      +...+...+++..+-....            |.++..         ..++..+-.+  -...|-+++|.++-++++....
T Consensus       227 q~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~e  306 (629)
T KOG2300|consen  227 QVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTE  306 (629)
T ss_pred             chhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            6665555555443333221            111111         1111111111  1245778899998888887654


Q ss_pred             hcc--h--------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812          363 KES--E--------TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI--SPEEVADAYSEISMQYESMNEFETA  430 (630)
Q Consensus       363 ~~~--~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A  430 (630)
                      +..  +        .....+..+..+-.-.|++.+|++....+.+.+....++  .....+.....+|.....-|.++.|
T Consensus       307 klkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enA  386 (629)
T KOG2300|consen  307 KLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENA  386 (629)
T ss_pred             hcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHH
Confidence            421  1        112344456677778899999999999988888765431  1223456777888888899999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC-------ccHHHHHHHHHHH
Q 006812          431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH-------FGVGYIYNNLGAA  503 (630)
Q Consensus       431 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~l~~~  503 (630)
                      ...|..|.......    ...+.+-.++|..|...|+-+.-.+    +++.    .++.+       ...+.+++..|..
T Consensus       387 e~hf~~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~----~ld~----i~p~nt~s~ssq~l~a~~~~v~glf  454 (629)
T KOG2300|consen  387 EFHFIEATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK----ALDL----IGPLNTNSLSSQRLEASILYVYGLF  454 (629)
T ss_pred             HHHHHHHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH----HHHh----cCCCCCCcchHHHHHHHHHHHHHHH
Confidence            99999998864332    1123445789999999887544333    3332    22221       1234566777888


Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812          504 YLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       504 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                      .+.++++.+|...+.+.+++...  .+.+.-.+-.+..|+.+....|+..++.+...-+++..+++.+
T Consensus       455 af~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  455 AFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD  520 (629)
T ss_pred             HHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence            88999999999999999997632  1122334456778899999999999999998888766555444

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.30  E-value=3.3e-09  Score=110.37  Aligned_cols=431  Identities=15%  Similarity=0.114  Sum_probs=301.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHH
Q 006812          129 PEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHA  208 (630)
Q Consensus       129 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  208 (630)
                      .++|++++-+++......-++-..   ...+++.++......+++.+|...-++++++.+...+..        .|....
T Consensus       640 ~~dav~~~~~al~k~~~~~~~~~f---np~~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~--------iPd~~K  708 (1236)
T KOG1839|consen  640 LDDAVKYATKALVKLVAVCGPYGF---NPAGFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLD--------IPDTMK  708 (1236)
T ss_pred             hHHHHHHHHHHHHHHHhhhccccc---CccccccCceEecCccccchhhhhhHhHHHHHHHHhccc--------cchhHH
Confidence            456777766666544333222222   223344457888899999999999999999988887766        556666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH
Q 006812          209 VHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV  288 (630)
Q Consensus       209 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  288 (630)
                      .+..++..++......+|+.+-.+.+.+.-...+..+|..+..+.+....-...|  +-+..+...+++-..+..+.++.
T Consensus       709 s~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i  786 (1236)
T KOG1839|consen  709 SYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHI  786 (1236)
T ss_pred             hccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHH
Confidence            6767776777777889999999988888777766666666554444443333333  67777777777777776666666


Q ss_pred             HHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHH----HcCCChh---------------------------HHHHH
Q 006812          289 EVAHDRRLLGVIYSG---LEEHQKALEQNELSQKVLK----TWGLSSE---------------------------LLRAE  334 (630)
Q Consensus       289 ~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~----~~~~~~~---------------------------~~~~~  334 (630)
                      ..+.. ..+...+..   ..+...+..-.-++.+...    ..+..++                           .....
T Consensus       787 ~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~  865 (1236)
T KOG1839|consen  787 QTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDV  865 (1236)
T ss_pred             HHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhh
Confidence            55544 233333222   2333322222222221000    0000011                           00000


Q ss_pred             HHHHHHHHHcCCHHHHHH---HHHHHHHHh-------h-h-------------------cch--HHHHHHHHHHHHHHhh
Q 006812          335 IDAANMQIALGKFEEAIN---TLKGVVRQT-------E-K-------------------ESE--TRALVFISMGKALCNQ  382 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~---~~~~~l~~~-------~-~-------------------~~~--~~~~~~~~la~~~~~~  382 (630)
                      ..+..+....|...-+..   .+..-+...       . +                   ..+  ..+.-....+......
T Consensus       866 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e  945 (1236)
T KOG1839|consen  866 KSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLE  945 (1236)
T ss_pred             hHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcc
Confidence            111122222222111111   111111000       0 0                   011  1133345567777788


Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHH
Q 006812          383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWL  461 (630)
Q Consensus       383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~  461 (630)
                      |.+.+|.+ ..+++.+.....+..++..+..|..++.++...|+.++|+.+-.++.-+.+...+.+++. ...+.+++..
T Consensus       946 ~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~ 1024 (1236)
T KOG1839|consen  946 DGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY 1024 (1236)
T ss_pred             cchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH
Confidence            89999999 888888888888888899999999999999999999999999999999999998888877 5667899999


Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006812          462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQN  541 (630)
Q Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  541 (630)
                      .+..++...|...+.++..+..-.++++||..+.+..+++.++...++++.|+.+.+.|+.+.....++....+...+..
T Consensus      1025 ~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~ 1104 (1236)
T KOG1839|consen 1025 EFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHA 1104 (1236)
T ss_pred             HHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHH
Confidence            99999999999999999998888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCCch
Q 006812          542 LSKAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQ  574 (630)
Q Consensus       542 la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~  574 (630)
                      +++.+...+++..|....+....++.. +|+++.
T Consensus      1105 ~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hs 1138 (1236)
T KOG1839|consen 1105 LARLFESMKDFRNALEHEKVTYGIYKEQLGPDHS 1138 (1236)
T ss_pred             HHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcc
Confidence            999999999999999999999999998 777643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.28  E-value=4.4e-10  Score=114.93  Aligned_cols=136  Identities=8%  Similarity=0.001  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      +....++.+||.+....|.+++|+..++.++++.     ++  ...+..+++.++.+.+++++|+..+++++.       
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-------  148 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----PD--SSEAFILMLRGVKRQQGIEAGRAEIELYFS-------  148 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----CC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhh-------
Confidence            3456777888888888888888888888887762     22  234667788888888888888888888777       


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                       ..|+.+..++.+|.++...|++++|+.+|++++.        .+|+...++..+|.++...|+.++|...|+++++..
T Consensus       149 -~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        149 -GGSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             -cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence             4566777778888888888888888888888876        456666778888888888888888888888887543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.23  E-value=1.2e-10  Score=84.45  Aligned_cols=76  Identities=32%  Similarity=0.439  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                      |..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++.++.++.++|.+|...|++++|++++++++++.+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            566788999999999999999999999999999 6666778888999999999999999999999999999999875

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.23  E-value=8.4e-08  Score=87.00  Aligned_cols=308  Identities=15%  Similarity=0.019  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812          111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL  190 (630)
Q Consensus       111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  190 (630)
                      .+.....-|..-...| +|.+|.....++-+..          +.-..+|..-+.+-..+|+++.|-.++.++-+...  
T Consensus        83 ra~~~~~egl~~l~eG-~~~qAEkl~~rnae~~----------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~--  149 (400)
T COG3071          83 RARKALNEGLLKLFEG-DFQQAEKLLRRNAEHG----------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG--  149 (400)
T ss_pred             HHHHHHHHHHHHHhcC-cHHHHHHHHHHhhhcC----------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC--
Confidence            4455566676777777 9999999888743221          23355667778888899999999999988876511  


Q ss_pred             hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH
Q 006812          191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP  270 (630)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  270 (630)
                                  .+. .......+.+....|+++.|.....+++++.        |....++.....+|...|++.+...
T Consensus       150 ------------~~~-l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--------pr~~~vlrLa~r~y~~~g~~~~ll~  208 (400)
T COG3071         150 ------------DDT-LAVELTRARLLLNRRDYPAARENVDQLLEMT--------PRHPEVLRLALRAYIRLGAWQALLA  208 (400)
T ss_pred             ------------Cch-HHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--------cCChHHHHHHHHHHHHhccHHHHHH
Confidence                        111 2345578999999999999999999888554        3335677888899999999999988


Q ss_pred             HHHHHHHHHhhhcCCCCHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 006812          271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVI--YSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE  348 (630)
Q Consensus       271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  348 (630)
                      +..+.-+-.-  .  .+++... +.+.+..  ....++-..+....+.-.++-.....   .+.....++.-+...|+.+
T Consensus       209 ~l~~L~ka~~--l--~~~e~~~-le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~---~p~l~~~~a~~li~l~~~~  280 (400)
T COG3071         209 ILPKLRKAGL--L--SDEEAAR-LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN---DPELVVAYAERLIRLGDHD  280 (400)
T ss_pred             HHHHHHHccC--C--ChHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc---ChhHHHHHHHHHHHcCChH
Confidence            8776544211  1  2222221 2222211  11111211122111111111111122   2445556778888999999


Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812          349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE  428 (630)
Q Consensus       349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  428 (630)
                      +|.++.+++++..-+..     ....++  ...-++...=++..++.++..        |+.+..+..||.++.+.+.|.
T Consensus       281 ~A~~~i~~~Lk~~~D~~-----L~~~~~--~l~~~d~~~l~k~~e~~l~~h--------~~~p~L~~tLG~L~~k~~~w~  345 (400)
T COG3071         281 EAQEIIEDALKRQWDPR-----LCRLIP--RLRPGDPEPLIKAAEKWLKQH--------PEDPLLLSTLGRLALKNKLWG  345 (400)
T ss_pred             HHHHHHHHHHHhccChh-----HHHHHh--hcCCCCchHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhHHH
Confidence            99999999987533221     111111  223456666566666555432        344478899999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812          429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK  483 (630)
Q Consensus       429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  483 (630)
                      +|..+++.++..        .+....+..+|.++.++|+..+|.+.+++++.+..
T Consensus       346 kA~~~leaAl~~--------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         346 KASEALEAALKL--------RPSASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHHHHhc--------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            999999998874        23456789999999999999999999999996543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.22  E-value=1.5e-09  Score=111.82  Aligned_cols=269  Identities=11%  Similarity=0.065  Sum_probs=186.2

Q ss_pred             CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812          286 NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  365 (630)
                      -.+....++..|...|...+++++|+...+.+++.      .|.....++.+|.++...++++++...  .++.....+.
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~   97 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL   97 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence            45566778889999999999999999999877775      688888999999999999999888777  6666555443


Q ss_pred             ---------------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812          366 ---------------ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA  430 (630)
Q Consensus       366 ---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  430 (630)
                                     ...-.++..+|.+|-++|+.++|...+++++++.        |..+.+++++|..|... +.++|
T Consensus        98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHH
Confidence                           1112477888999999999999999999988875        56678889999999888 99999


Q ss_pred             HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh
Q 006812          431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRP  510 (630)
Q Consensus       431 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  510 (630)
                      ++++.+|+..+-.... ....-..|..  .+...-.+++.=..+.++...    ..+  ....+..+.-+=..|...++|
T Consensus       169 ~~m~~KAV~~~i~~kq-~~~~~e~W~k--~~~~~~~d~d~f~~i~~ki~~----~~~--~~~~~~~~~~l~~~y~~~~~~  239 (906)
T PRK14720        169 ITYLKKAIYRFIKKKQ-YVGIEEIWSK--LVHYNSDDFDFFLRIERKVLG----HRE--FTRLVGLLEDLYEPYKALEDW  239 (906)
T ss_pred             HHHHHHHHHHHHhhhc-chHHHHHHHH--HHhcCcccchHHHHHHHHHHh----hhc--cchhHHHHHHHHHHHhhhhhh
Confidence            9999998886432210 0000111111  111122222222222222222    111  233445566667889999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812          511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK  590 (630)
Q Consensus       511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~  590 (630)
                      ++++.+++.++++        .|....+...++.+|.  +.|.. ...+++++++..-..  ....+..++.-|++...-
T Consensus       240 ~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~--~~~~~~~~i~~fek~i~f  306 (906)
T PRK14720        240 DEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGN--NRKPVKDCIADFEKNIVF  306 (906)
T ss_pred             hHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcccc--CCccHHHHHHHHHHHeee
Confidence            9999999999994        4555568899999998  55555 777888877643221  225567789999886655


Q ss_pred             hcC
Q 006812          591 ASG  593 (630)
Q Consensus       591 ~~~  593 (630)
                      ..|
T Consensus       307 ~~G  309 (906)
T PRK14720        307 DTG  309 (906)
T ss_pred             cCC
Confidence            443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.22  E-value=3.9e-10  Score=92.28  Aligned_cols=125  Identities=10%  Similarity=-0.010  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCCh
Q 006812          389 KRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKV  468 (630)
Q Consensus       389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  468 (630)
                      ..++++++++.        |..   +..+|.++...|++++|..+|++++.+       ++....++..+|.++...|++
T Consensus        13 ~~~~~~al~~~--------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVD--------PET---VYASGYASWQEGDYSRAVIDFSWLVMA-------QPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcC--------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHhhH
Confidence            34566666653        332   557899999999999999999999875       223456889999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006812          469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS  547 (630)
Q Consensus       469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  547 (630)
                      ++|+..|++++.        -.|....+++++|.++...|++++|+..|++++.+.        |+....+.+++.+..
T Consensus        75 ~~A~~~y~~Al~--------l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~  137 (144)
T PRK15359         75 TTAINFYGHALM--------LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQI  137 (144)
T ss_pred             HHHHHHHHHHHh--------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH
Confidence            999999999998        346667799999999999999999999999999853        444456666666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=3e-07  Score=90.75  Aligned_cols=259  Identities=15%  Similarity=0.073  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHhccchHH---------HHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812          206 MHAVHLELANVKTAMGRREEALEHLQKCL----EIKELILEEDSRE---------LGVANRDLAEAFVAVLNFKEALPFG  272 (630)
Q Consensus       206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~  272 (630)
                      +...|++.+..+...++.+.|+++|+++-    ++.+-. .++.+.         ....|...|......|+.+.|+.+|
T Consensus       857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY  935 (1416)
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence            44678899999999999999999999852    222211 111111         1245667788888999999999999


Q ss_pred             HHHHHHHhhhc-----CC---------CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc--CCChhHHHHHHH
Q 006812          273 LKALEIHKKGL-----GH---------NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW--GLSSELLRAEID  336 (630)
Q Consensus       273 ~~al~~~~~~~-----~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~  336 (630)
                      ..|-+.+....     |.         ...+. .+.+.||..|...|++.+|+.+|.+|......+  -...+.-.-+.+
T Consensus       936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen  936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred             HHhhhhhhheeeEeeccCchHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            88866443210     00         01112 233456666666666666666666554432111  000111111111


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHH-----HHHHHHHhhcCCCcHHHH
Q 006812          337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLE-----IACGILDKKETISPEEVA  411 (630)
Q Consensus       337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-----~a~~~~~~~~~~~~~~~~  411 (630)
                      ++.. ....+.-.|..+|++.--           ....-..+|.+.|.+.+|++..-     .++++..+...+  ...+
T Consensus      1015 lal~-s~~~d~v~aArYyEe~g~-----------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~--~sDp 1080 (1416)
T KOG3617|consen 1015 LALM-SGGSDLVSAARYYEELGG-----------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA--GSDP 1080 (1416)
T ss_pred             HHhh-cCchhHHHHHHHHHHcch-----------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC--CCCH
Confidence            1110 011112222223322100           00011234445555555554322     133444333322  1233


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHhC---------------CCCCCc---hhHHHHHHHHHHHHcCC
Q 006812          412 DAYSEISMQYESMNEFETAISLL------KRTLALLEKL---------------PQAQHS---EGSVSARIGWLLLLTGK  467 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~---------------~~~~~~---~~~~~~~la~~~~~~g~  467 (630)
                      ..+..-+..+....+|++|..++      +.|+.++...               .+...+   ...++..+|.++.++|.
T Consensus      1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence            56667788888888899988765      4455544211               011111   24577899999999999


Q ss_pred             hhhHHHHHHHHHH
Q 006812          468 VPQAIPYLESAAE  480 (630)
Q Consensus       468 ~~~A~~~~~~al~  480 (630)
                      |..|-+-|.+|=.
T Consensus      1161 Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1161 YHAATKKFTQAGD 1173 (1416)
T ss_pred             hHHHHHHHhhhhh
Confidence            9999998887754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.19  E-value=2.2e-09  Score=109.91  Aligned_cols=133  Identities=11%  Similarity=0.010  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                      +.++..||.+....|.+++|...++.++++.        |+...+..+++.++.+.+++++|+..+++++..     .++
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-----~p~  152 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-----GSS  152 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-----CCC
Confidence            6699999999999999999999999999887        788899999999999999999999999999885     222


Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                        ....++.+|.++.+.|++++|+.+|++++.        .+|+...++..+|.++...|+.++|...|+++++..
T Consensus       153 --~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        153 --SAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             --CHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence              356789999999999999999999999997        457778899999999999999999999999999865

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.19  E-value=4.4e-10  Score=91.96  Aligned_cols=110  Identities=19%  Similarity=0.094  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh
Q 006812          431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRP  510 (630)
Q Consensus       431 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  510 (630)
                      ..++++++++.        |.  .+..+|.++...|++++|..+|++++.        ..|....++..+|.++...|++
T Consensus        13 ~~~~~~al~~~--------p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVD--------PE--TVYASGYASWQEGDYSRAVIDFSWLVM--------AQPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcC--------HH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHhhH
Confidence            45677777751        22  356789999999999999999999998        4577788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      ++|+..|++++.        .+|....+++++|.++...|++++|+..|++++++.
T Consensus        75 ~~A~~~y~~Al~--------l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         75 TTAINFYGHALM--------LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHh--------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999998        446667899999999999999999999999999764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.19  E-value=1e-09  Score=106.45  Aligned_cols=226  Identities=18%  Similarity=0.155  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812          289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR  368 (630)
Q Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  368 (630)
                      .....-..++..+...|-...|+..+++              ...+-....+|...|+..+|..+..+-++ .+++    
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Er--------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d----  456 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFER--------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPD----  456 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHh--------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCc----
Confidence            4445556789999999999999988875              45566778899999999999999888776 1111    


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                      +..|..+|.+....-       +++++.++...       ..+.+...+|......++|.++...++.++++.       
T Consensus       457 ~~lyc~LGDv~~d~s-------~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-------  515 (777)
T KOG1128|consen  457 PRLYCLLGDVLHDPS-------LYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEIN-------  515 (777)
T ss_pred             chhHHHhhhhccChH-------HHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhcC-------
Confidence            335666666555544       45555554432       233455667777777899999999999999872       


Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                      +....+|+.+|.+..+.++++.|.+.|..++.        -.|+...++++++..|...|+-.+|...+++|++.     
T Consensus       516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-----  582 (777)
T KOG1128|consen  516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-----  582 (777)
T ss_pred             ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-----
Confidence            22356899999999999999999999999998        35777889999999999999999999999999983     


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q 006812          529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG  570 (630)
Q Consensus       529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  570 (630)
                         +.....++.|...+....|.+++|++.|.+.+.+.....
T Consensus       583 ---n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  583 ---NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             ---CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence               344447888888999999999999999999998766643

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=3.1e-07  Score=79.78  Aligned_cols=292  Identities=13%  Similarity=0.075  Sum_probs=189.9

Q ss_pred             hhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHH
Q 006812          168 YSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE  247 (630)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  247 (630)
                      .+-.+|.+|++++..-.+.                .|.....+..+|.||+...+|..|.++|++.-        ..+|.
T Consensus        21 I~d~ry~DaI~~l~s~~Er----------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~--------ql~P~   76 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELER----------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLG--------QLHPE   76 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhChH
Confidence            4566777777766544333                23233566789999999999999999999855        44565


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812          248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS  327 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  327 (630)
                      ....-..-+...++.+.+..|+.......+        +......++..-+-+.+..+++..+....++       . ..
T Consensus        77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ-------l-p~  140 (459)
T KOG4340|consen   77 LEQYRLYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ-------L-PS  140 (459)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHh-------c-cC
Confidence            566666678888889999999877655432        2223334455556677777888777665543       1 11


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC--
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI--  405 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--  405 (630)
                      ...+.+.++.|-+.++.|+++.|.+-|+.+++..+-.+.    .-++++.++++.++++.|+++..+.++...+.++.  
T Consensus       141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg  216 (459)
T KOG4340|consen  141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG  216 (459)
T ss_pred             CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence            356778889999999999999999999999987654433    66789999999999999999998877655443311  


Q ss_pred             --------Cc-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC
Q 006812          406 --------SP-----------EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG  466 (630)
Q Consensus       406 --------~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  466 (630)
                              +.           .....+++..+.++.+.|+++.|.+.+...-   ++.  +...+..++.+++..- ..+
T Consensus       217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP---PRa--E~elDPvTLHN~Al~n-~~~  290 (459)
T KOG4340|consen  217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP---PRA--EEELDPVTLHNQALMN-MDA  290 (459)
T ss_pred             ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC---Ccc--cccCCchhhhHHHHhc-ccC
Confidence                    10           1234566667788888899888866543211   110  1111233555555432 235


Q ss_pred             ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHH
Q 006812          467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF  517 (630)
Q Consensus       467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  517 (630)
                      ++.+...-++-.+.+        .|--.++..++-.+|++..-|+-|...+
T Consensus       291 ~p~~g~~KLqFLL~~--------nPfP~ETFANlLllyCKNeyf~lAADvL  333 (459)
T KOG4340|consen  291 RPTEGFEKLQFLLQQ--------NPFPPETFANLLLLYCKNEYFDLAADVL  333 (459)
T ss_pred             CccccHHHHHHHHhc--------CCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence            555555555444442        2333445666666777666666655544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.16  E-value=1.3e-08  Score=99.04  Aligned_cols=223  Identities=17%  Similarity=0.117  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .....++..+...|-...|+..|++                ...+.....||...|+..+|..+..+-++         .
T Consensus       399 q~q~~laell~slGitksAl~I~Er----------------lemw~~vi~CY~~lg~~~kaeei~~q~le---------k  453 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFER----------------LEMWDPVILCYLLLGQHGKAEEINRQELE---------K  453 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHh----------------HHHHHHHHHHHHHhcccchHHHHHHHHhc---------C
Confidence            3455789999999999999999887                34566778899999999999888776554         1


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET  367 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  367 (630)
                      +..+..|..+|.+.....-|++|.++.+.            ....+...+|......++|.++..+++..+++.+    .
T Consensus       454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~------------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np----l  517 (777)
T KOG1128|consen  454 DPDPRLYCLLGDVLHDPSLYEKAWELSNY------------ISARAQRSLALLILSNKDFSEADKHLERSLEINP----L  517 (777)
T ss_pred             CCcchhHHHhhhhccChHHHHHHHHHhhh------------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCc----c
Confidence            22335566677776666556665555432            2233556667777788999999999999998543    3


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                      ...+|+.+|.+..+.++++.|.++|...+.+.        |+...+|++++..|...++-.+|...+.+|++-.      
T Consensus       518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn------  583 (777)
T KOG1128|consen  518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN------  583 (777)
T ss_pred             chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC------
Confidence            45599999999999999999999999988875        7888999999999999999999999999999852      


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                       .....+|.|...+....|.+++|++.|.+.+.+.+...
T Consensus       584 -~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  584 -YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             -CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence             22235777888888999999999999999998776553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.15  E-value=4.2e-09  Score=91.22  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=102.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 006812          424 MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA  503 (630)
Q Consensus       424 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  503 (630)
                      .++.++++..+++++..       ++.+...|..+|.+|...|++++|+..|++++.+        .|+...++..+|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~-------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA-------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            45567777777777764       2334668999999999999999999999999983        46667788999997


Q ss_pred             H-HHcCC--hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          504 Y-LELDR--PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       504 ~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      + ...|+  +++|...++++++        .+|+...++..+|..+...|++++|+.+|+++++....
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~--------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALA--------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5 67787  5999999999999        55777789999999999999999999999999987544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.14  E-value=1.8e-05  Score=82.24  Aligned_cols=440  Identities=13%  Similarity=0.044  Sum_probs=270.9

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      ...+.+.+++|.+++....+++.|..++++++.+..+.   +- ......+...++.++.+.+... |...+++.++..+
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~  130 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERH---RL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE  130 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---ch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence            45678899999999976669999999999999887541   11 1123455667889998888877 9999999999866


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLEL-ANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE  267 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (630)
                      ......          .. ..+..+ ...+...+++..|++.++.........  .+......+....+.+....+..++
T Consensus       131 ~~~~~~----------w~-~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d  197 (608)
T PF10345_consen  131 TYGHSA----------WY-YAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDD  197 (608)
T ss_pred             ccCchh----------HH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchh
Confidence            522111          11 112122 333333379999999999988877643  3334445555666777888888999


Q ss_pred             HHHHHHHHHHHHhhh--cCCCCHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHHHcCCCh---------------
Q 006812          268 ALPFGLKALEIHKKG--LGHNSVEVAHDRRLLGV--IYSGLEEHQKALEQNELSQKVLKTWGLSS---------------  328 (630)
Q Consensus       268 A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------------  328 (630)
                      +++..+++.......  .+..++....++..+-.  ++...|+++.+...+.+....+......+               
T Consensus       198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~  277 (608)
T PF10345_consen  198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI  277 (608)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence            999999987766643  22223333444444433  44567787788777766665554432221               


Q ss_pred             ----------h-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc----------------------
Q 006812          329 ----------E-----------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES----------------------  365 (630)
Q Consensus       329 ----------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----------------------  365 (630)
                                .           .+-++.--|......+..++|.+++.++++...+..                      
T Consensus       278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~  357 (608)
T PF10345_consen  278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR  357 (608)
T ss_pred             ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence                      0           112233335556677777799999999887654422                      


Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812          366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI-SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  444 (630)
                      .....+....+.+..-.+++..|...+........+.... ........++..|..+...|+.+.|..+|.+..-.....
T Consensus       358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~  437 (608)
T PF10345_consen  358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA  437 (608)
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh
Confidence            0112334456777788899999999999888776544321 122346778889999999999999999998554333222


Q ss_pred             CCCCC--ch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHH--HcCChhHHHHHH
Q 006812          445 PQAQH--SE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP-KHFGVGYIYNNLGAAYL--ELDRPQSAAQVF  517 (630)
Q Consensus       445 ~~~~~--~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~  517 (630)
                      .....  .+  ..+..++..++...+.-.....-..+.++........ .+.....++..+-.++.  ..-...++...+
T Consensus       438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l  517 (608)
T PF10345_consen  438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL  517 (608)
T ss_pred             hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence            22222  22  2333677777776665444222223333321111111 11122222222222222  223345899999


Q ss_pred             HHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          518 AFAKDIM-DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       518 ~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      .++++.. ... + +..-..-++..++..+. .|+..+......++....++.
T Consensus       518 ~~~L~~~~~~~-~-n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~  567 (608)
T PF10345_consen  518 QEALKMANNKL-G-NSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS  567 (608)
T ss_pred             HHHHHHHHHhh-c-cchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence            9999887 332 1 23333445666777777 899998888888887766665

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.14  E-value=5.1e-09  Score=90.68  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=97.8

Q ss_pred             hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH
Q 006812          382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL  461 (630)
Q Consensus       382 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  461 (630)
                      .++.++++..+++++...        |+....|..+|.+|...|++++|+..|++++.+     .++  +..++..+|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~--------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~--~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGE--NAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHH
Confidence            556677788888877764        566788999999999999999999999999886     222  34578888986


Q ss_pred             H-HHcCC--hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          462 L-LLTGK--VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       462 ~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                      + ...|+  +++|...++++++        .+|....++..+|.++...|++++|+.+|++++++.
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~--------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALA--------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4 67777  5899999999998        456667789999999999999999999999998864

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.11  E-value=2.4e-09  Score=85.29  Aligned_cols=120  Identities=15%  Similarity=0.055  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ....+.+|..+...|++++|...|+-...+        +|.....+++||.++..+|++++|+..|.++..+        
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--------   98 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--------   98 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence            346788999999999999999999988873        4777889999999999999999999999999984        


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 006812          532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLK  588 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~  588 (630)
                      .|+....+.++|.++...|+.+.|.+.|+.++.... ..+....-.++|..+++.+.
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG-EVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhh
Confidence            345558999999999999999999999999998873 22333444455666665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.09  E-value=9.7e-09  Score=87.87  Aligned_cols=170  Identities=17%  Similarity=0.157  Sum_probs=137.4

Q ss_pred             HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812          323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK  402 (630)
Q Consensus       323 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  402 (630)
                      ....+|....+ ..++..+...|+-+.+..+..++....+++    ...+..+|......|++.+|+..+.++....   
T Consensus        59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d----~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---  130 (257)
T COG5010          59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD----RELLAAQGKNQIRNGNFGEAVSVLRKAARLA---  130 (257)
T ss_pred             HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc----HHHHHHHHHHHHHhcchHHHHHHHHHHhccC---
Confidence            33446766777 888999999999999988888866544433    2245558999999999999999999998765   


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812          403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL  482 (630)
Q Consensus       403 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (630)
                           |.....|+.+|.+|.+.|++++|...|.+++++....       ..+..|+|..+.-.|+++.|..++..+..  
T Consensus       131 -----p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l--  196 (257)
T COG5010         131 -----PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYL--  196 (257)
T ss_pred             -----CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHh--
Confidence                 5667899999999999999999999999999974322       24789999999999999999999998876  


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006812          483 KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFA  520 (630)
Q Consensus       483 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  520 (630)
                            ..+....+..+++.+...+|++++|...-.+-
T Consensus       197 ------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         197 ------SPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             ------CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence                  22334557789999999999999998766543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.09  E-value=5.2e-08  Score=87.23  Aligned_cols=176  Identities=14%  Similarity=0.081  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      ..++..|..+...|+|++|+..|++.+...     +..+....+...+|.+|+..+++++|+..+++.++..+     ++
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P-----~~  102 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----TH  102 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----CC
Confidence            456678999999999999999999988654     55567777889999999999999999999999999876     57


Q ss_pred             HHHHHHHHHHHHHHhccc---------------cHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHHHHH
Q 006812          288 VEVAHDRRLLGVIYSGLE---------------EHQKALEQNELSQKVLKTWGLSSELL--------------RAEIDAA  338 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~la  338 (630)
                      +....+++.+|.++...+               +...+...+.....+.+..++++-..              .--..+|
T Consensus       103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia  182 (243)
T PRK10866        103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA  182 (243)
T ss_pred             CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888889998764443               33333333333334445554442222              2223568


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          339 NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                      ..|.+.|.|..|+.-++.+++..+..+. ...++..++..|...|..++|......
T Consensus       183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~-~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        183 EYYTKRGAYVAVVNRVEQMLRDYPDTQA-TRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            8899999999999999999998876543 466899999999999999999876553

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.08  E-value=4.8e-08  Score=85.48  Aligned_cols=184  Identities=15%  Similarity=0.129  Sum_probs=129.0

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .+..++..|..++..|+|.+|+..|++.+.....             .+....+.+.+|.++...|++++|+..+++.++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3556788999999999999999999999887322             234457788999999999999999999999887


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVL-----------NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL  304 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  304 (630)
                      ..     ++++....+++.+|.++....           ...+|+..|+..+..+++     ++....+-..+..+..  
T Consensus        71 ~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~-----S~y~~~A~~~l~~l~~--  138 (203)
T PF13525_consen   71 LY-----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN-----SEYAEEAKKRLAELRN--  138 (203)
T ss_dssp             H------TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT-----STTHHHHHHHHHHHHH--
T ss_pred             HC-----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC-----chHHHHHHHHHHHHHH--
Confidence            65     667778888999998876653           234677777777766653     3322232222222211  


Q ss_pred             ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812          305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK  384 (630)
Q Consensus       305 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~  384 (630)
                                              ....--..+|..|.+.|.|..|+..++.+++..+.... ...++..++..|..+|.
T Consensus       139 ------------------------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~-~~~al~~l~~~y~~l~~  193 (203)
T PF13525_consen  139 ------------------------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA-AEEALARLAEAYYKLGL  193 (203)
T ss_dssp             ------------------------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH-HHHHHHHHHHHHHHTT-
T ss_pred             ------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHHHHhCC
Confidence                                    12333456789999999999999999999998776543 35588888999999988


Q ss_pred             HHHHH
Q 006812          385 FADAK  389 (630)
Q Consensus       385 ~~~A~  389 (630)
                      .+.|.
T Consensus       194 ~~~a~  198 (203)
T PF13525_consen  194 KQAAD  198 (203)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            87543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.07  E-value=4.5e-08  Score=101.24  Aligned_cols=230  Identities=14%  Similarity=0.068  Sum_probs=159.1

Q ss_pred             chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 006812          202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK  281 (630)
Q Consensus       202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  281 (630)
                      ..|....++..|...+...+++++|+..++.+++        .+|.....++.+|.++...+++.++...  .++.+...
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~   95 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ   95 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence            3456678888999999999999999999998774        4455678899999999999999888776  56555443


Q ss_pred             hcCC-----------CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH
Q 006812          282 GLGH-----------NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEA  350 (630)
Q Consensus       282 ~~~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  350 (630)
                      ....           +.+..-.+++.+|.+|..+|+.++|...+++++++      +|..+.+++++|..|... +.++|
T Consensus        96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHH
Confidence            1100           11222357888999999999999999999999987      688999999999999999 99999


Q ss_pred             HHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812          351 INTLKGVVRQTEKES--ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE  428 (630)
Q Consensus       351 ~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  428 (630)
                      +.++.+++...-...  ......|..+  +.....+++.=....++.+....      .......+.-+=..|...++|+
T Consensus       169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~~~------~~~~~~~~~~l~~~y~~~~~~~  240 (906)
T PRK14720        169 ITYLKKAIYRFIKKKQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGHRE------FTRLVGLLEDLYEPYKALEDWD  240 (906)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHHH--HhcCcccchHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhhhhhh
Confidence            999999988543221  1111122221  11222222222222222211111      1234456666667888999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHH
Q 006812          429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLL  463 (630)
Q Consensus       429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  463 (630)
                      +++.+++.++++..+       +..+...++.+|.
T Consensus       241 ~~i~iLK~iL~~~~~-------n~~a~~~l~~~y~  268 (906)
T PRK14720        241 EVIYILKKILEHDNK-------NNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHHhcCCc-------chhhHHHHHHHHH
Confidence            999999999986322       2345677777776

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=6.7e-08  Score=81.94  Aligned_cols=190  Identities=16%  Similarity=0.135  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc
Q 006812          347 FEEAINTLKGVVRQTEK--ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM  424 (630)
Q Consensus       347 ~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  424 (630)
                      .++-.++....+...+.  ..+....++-.+..+....|+.+.|..++++....+        |....+...-|..+...
T Consensus        28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~   99 (289)
T KOG3060|consen   28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEAT   99 (289)
T ss_pred             HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHh
Confidence            34444444444433222  123334455555556666666777766666544333        22224444456666667


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812          425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY  504 (630)
Q Consensus       425 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  504 (630)
                      |++++|+++|+..++       +++.+..++-.--.+...+|+.-+|++.+..-++.+        +...++|..++.+|
T Consensus       100 ~~~~~A~e~y~~lL~-------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY  164 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLE-------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIY  164 (289)
T ss_pred             hchhhHHHHHHHHhc-------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHH
Confidence            777777777766654       222233444444445556666667776666666543        33445677777777


Q ss_pred             HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Q 006812          505 LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG---SYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       505 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~  567 (630)
                      ...|+|++|.-++++.+-+        .|.....+..+|.+++-.|   +++-|.++|.+++++..
T Consensus       165 ~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  165 LSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            7777777777777776652        2333345555566555544   45556777777776544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.04  E-value=5.8e-06  Score=81.00  Aligned_cols=308  Identities=14%  Similarity=0.078  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHH------HHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHH
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANR------ALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANR  185 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (630)
                      +..|-..|.+|.... ++++|+++|++      ++++.+-.     ........-...|.-+...|+++.|+..|-++-.
T Consensus       661 ~elydkagdlfeki~-d~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~~  734 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIH-DFDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC  734 (1636)
T ss_pred             hHHHHhhhhHHHHhh-CHHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh
Confidence            456667777888887 99999999876      34433221     0112333334567777788888888888765533


Q ss_pred             HH-------------------hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchH
Q 006812          186 ML-------------------GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR  246 (630)
Q Consensus       186 ~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  246 (630)
                      +.                   +.+.+..          .....|-.++.-|...|+|+.|.+.|.++-            
T Consensus       735 ~~kaieaai~akew~kai~ildniqdqk----------~~s~yy~~iadhyan~~dfe~ae~lf~e~~------------  792 (1636)
T KOG3616|consen  735 LIKAIEAAIGAKEWKKAISILDNIQDQK----------TASGYYGEIADHYANKGDFEIAEELFTEAD------------  792 (1636)
T ss_pred             HHHHHHHHhhhhhhhhhHhHHHHhhhhc----------cccccchHHHHHhccchhHHHHHHHHHhcc------------
Confidence            32                   2222211          111234456777788888888888776632            


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH------HHHHHH
Q 006812          247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN------ELSQKV  320 (630)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~  320 (630)
                          ....-...|.+.|++..|.++.++..         ........|..-+.-....|+|.+|...|      .+++.+
T Consensus       793 ----~~~dai~my~k~~kw~da~kla~e~~---------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm  859 (1636)
T KOG3616|consen  793 ----LFKDAIDMYGKAGKWEDAFKLAEECH---------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM  859 (1636)
T ss_pred             ----hhHHHHHHHhccccHHHHHHHHHHhc---------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence                22233456677777777766655432         12233344444455555556665555443      233333


Q ss_pred             HHHcCCChh------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH
Q 006812          321 LKTWGLSSE------------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA  388 (630)
Q Consensus       321 ~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  388 (630)
                      ....|...+            ...+...+|.-+...|+...|...|-++-..            ..-..+|...+-|++ 
T Consensus       860 ydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~------------kaavnmyk~s~lw~d-  926 (1636)
T KOG3616|consen  860 YDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF------------KAAVNMYKASELWED-  926 (1636)
T ss_pred             HHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH------------HHHHHHhhhhhhHHH-
Confidence            333332211            2234455666666777777777666554321            111122322233333 


Q ss_pred             HHHHHHHHHHHHhhcCCCcHHHH-HHHH-H-----HHHHHHHcCCHHHHHHH------HHHHHHHHHhCCCCCCchhHHH
Q 006812          389 KRCLEIACGILDKKETISPEEVA-DAYS-E-----ISMQYESMNEFETAISL------LKRTLALLEKLPQAQHSEGSVS  455 (630)
Q Consensus       389 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~-~-----la~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~  455 (630)
                            +..+.+..+|.+..... ..|. .     -..++.+.|-...|+.+      |+-+.++.+-.  ..+....+.
T Consensus       927 ------ayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~--~k~k~~~vh  998 (1636)
T KOG3616|consen  927 ------AYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA--AKDKMGEVH  998 (1636)
T ss_pred             ------HHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh--hhccCccch
Confidence                  33333333332221111 0000 0     01122333444444332      22222222211  112234577


Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAER  481 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~  481 (630)
                      ..++..+...|++++|-+.|-+++.+
T Consensus       999 lk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen  999 LKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred             hHHhhhhhhccchhhhhHhhHHHhhc
Confidence            88899999999999999999999884

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.04  E-value=6.6e-08  Score=101.03  Aligned_cols=406  Identities=18%  Similarity=0.175  Sum_probs=271.5

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCC
Q 006812          119 ALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGS  198 (630)
Q Consensus       119 g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  198 (630)
                      +..+...+ ++.+|...=++++++.+..++.+  .|+....+..+...++......+|+.+-.+++.+.-...+.. +++
T Consensus       672 ~v~~~~t~-~~~~a~~~~qk~~d~~Erll~~~--iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~-~~~  747 (1236)
T KOG1839|consen  672 AVVLYHTE-DFNQAAIQQQKVLDINERLLGLD--IPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLS-HPN  747 (1236)
T ss_pred             ceEecCcc-ccchhhhhhHhHHHHHHHHhccc--cchhHHhccccceeeecccHHHHHHHHhhHHHHHhhcccccc-Ccc
Confidence            44455566 78888888889999888885555  457777777777777888889999999999998877666554 222


Q ss_pred             CccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHH
Q 006812          199 VEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA---VLNFKEALPFGLKA  275 (630)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a  275 (630)
                      .       +..+.+..  ....+--+-+..+...+++...+.++.++...+.+ +-+..++..   ......+..-.-++
T Consensus       748 ~-------~a~~~~v~--l~~l~~~ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka  817 (1236)
T KOG1839|consen  748 T-------AATYINVA--LMELGVGEIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKA  817 (1236)
T ss_pred             c-------cchhhhHH--HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhh
Confidence            2       22111111  11222226677777777777777766666655544 333333322   22222222211121


Q ss_pred             HHHHhhh--cCCCCH---------------------------HHHHHHHHHHHHHhccccHHHHHH---HHHHHHHH-HH
Q 006812          276 LEIHKKG--LGHNSV---------------------------EVAHDRRLLGVIYSGLEEHQKALE---QNELSQKV-LK  322 (630)
Q Consensus       276 l~~~~~~--~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~---~~~~a~~~-~~  322 (630)
                      .+...+.  -+...+                           ........+..+....|...-+..   .+..-+.. .+
T Consensus       818 ~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r  897 (1236)
T KOG1839|consen  818 KDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPAR  897 (1236)
T ss_pred             hhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhh
Confidence            1100000  000000                           000000111222222222111111   11111111 11


Q ss_pred             HcCCC------------------------h--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh----hcchHHHHHH
Q 006812          323 TWGLS------------------------S--ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE----KESETRALVF  372 (630)
Q Consensus       323 ~~~~~------------------------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~  372 (630)
                      .....                        |  ....-....+......|.+.+|.+ ..+++....    ..++..+..|
T Consensus       898 ~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~  976 (1236)
T KOG1839|consen  898 NYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKY  976 (1236)
T ss_pred             hccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHH
Confidence            10000                        1  112223344556666777888877 555555443    2467778899


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-  451 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  451 (630)
                      ..++.++...|++++|+..-.++.-+.++..+.+++.....+.+++...+..++...|...+.++..+..-..++.+|. 
T Consensus       977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen  977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred             HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988777887777 


Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      +.+..+++.++...++++.|+.+.+.|+......+|+..-.++.++..+++.+...+++..|....+....++...+|++
T Consensus      1057 a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~ 1136 (1236)
T KOG1839|consen 1057 ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPD 1136 (1236)
T ss_pred             hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCC
Confidence            45558999999999999999999999999999999988889999999999999999999999999999999999999998


Q ss_pred             CHHHHHHH
Q 006812          532 HADSIEAC  539 (630)
Q Consensus       532 ~~~~~~~~  539 (630)
                      |....++-
T Consensus      1137 hsrt~~S~ 1144 (1236)
T KOG1839|consen 1137 HSRTKESS 1144 (1236)
T ss_pred             cccchhhH
Confidence            88766443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.04  E-value=2.8e-05  Score=76.42  Aligned_cols=290  Identities=17%  Similarity=0.159  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLK------ALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK  322 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  322 (630)
                      ...|-.-|.+|.+..++++|+++|++      ++++.+-.+   +..+...-..-|.-....|+++.|+.+|-++-.+.+
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k  737 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK  737 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence            34566678888888899999998874      455544322   122333333447777788889988888765543322


Q ss_pred             H-------------------cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhc
Q 006812          323 T-------------------WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE  383 (630)
Q Consensus       323 ~-------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~  383 (630)
                      .                   +.+.......|-.++.-|...|+|+.|.++|.++-            ....-..+|.+.|
T Consensus       738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~------------~~~dai~my~k~~  805 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD------------LFKDAIDMYGKAG  805 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc------------hhHHHHHHHhccc
Confidence            2                   22222222233456677777788887777776531            2233345566777


Q ss_pred             cHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHhCCC---------CC
Q 006812          384 KFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL------KRTLALLEKLPQ---------AQ  448 (630)
Q Consensus       384 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~---------~~  448 (630)
                      +|.+|.+.-++.       .  .+......|...+.-.-..|+|.+|..+|      .+++.++.+..-         ..
T Consensus       806 kw~da~kla~e~-------~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  806 KWEDAFKLAEEC-------H--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH  876 (1636)
T ss_pred             cHHHHHHHHHHh-------c--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh
Confidence            777776554432       1  12345556666666667777777776665      345555544321         11


Q ss_pred             Cch--hHHHHHHHHHHHHcCChhhHHHHHHHHHH------HH-------------HHhcCCC-CccHHHHHH------HH
Q 006812          449 HSE--GSVSARIGWLLLLTGKVPQAIPYLESAAE------RL-------------KESFGPK-HFGVGYIYN------NL  500 (630)
Q Consensus       449 ~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~-------------~~~~~~~-~~~~~~~~~------~l  500 (630)
                      +++  ..+...+|.-|...|+...|...|-++-+      ++             +..-|.+ +..++..|.      .-
T Consensus       877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaa  956 (1636)
T KOG3616|consen  877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAA  956 (1636)
T ss_pred             ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHH
Confidence            222  23556778888888888888877755432      11             1111111 011111110      00


Q ss_pred             HHHHHHcCChhHHHHH------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          501 GAAYLELDRPQSAAQV------FAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       501 ~~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ..++.+.|-.+.|+..      |+-+.++.+-.....   ...+...++..+...|++++|-+.|-+++++
T Consensus       957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen  957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred             HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence            1223344445555433      223333322111111   2256778889999999999999999999865

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.03  E-value=2.4e-08  Score=79.71  Aligned_cols=103  Identities=17%  Similarity=0.045  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      ++.....+.+|..+...|++++|...|+-...+       ++.....|++||.++..+|++++|+..|.+++.+     .
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~   99 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----K   99 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----C
Confidence            456677888999999999999999999988876       2334568899999999999999999999999983     3


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                         |+.+..+.++|.|+...|+.+.|...|+.++..+.
T Consensus       100 ---~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        100 ---IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             ---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence               45556899999999999999999999999999874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.02  E-value=5.6e-09  Score=95.80  Aligned_cols=274  Identities=16%  Similarity=0.152  Sum_probs=169.7

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812          257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEID  336 (630)
Q Consensus       257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  336 (630)
                      .-++..|+|..++.-++  +.      ..+..........+.++|..+|+++..+.-..         +..+....+...
T Consensus         9 rn~fy~G~Y~~~i~e~~--~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~---------~~~~~~l~av~~   71 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS--LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIK---------KSSSPELQAVRL   71 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH--CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----------TTSSCCCHHHHH
T ss_pred             HHHHHhhhHHHHHHHhh--cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhc---------cCCChhHHHHHH
Confidence            34567899998886554  11      11344455566678889999999886654221         111222334445


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 006812          337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSE  416 (630)
Q Consensus       337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  416 (630)
                      ++..+...++.+.++..++..+...  ............|.++...|++++|++.+.+.             ........
T Consensus        72 la~y~~~~~~~e~~l~~l~~~~~~~--~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al  136 (290)
T PF04733_consen   72 LAEYLSSPSDKESALEELKELLADQ--AGESNEIVQLLAATILFHEGDYEEALKLLHKG-------------GSLELLAL  136 (290)
T ss_dssp             HHHHHCTSTTHHCHHHHHHHCCCTS-----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHH
T ss_pred             HHHHHhCccchHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHH
Confidence            5555544455555555544433211  11112335566678888999999999887653             11244455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHhcCCCCccHH
Q 006812          417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG--KVPQAIPYLESAAERLKESFGPKHFGVG  494 (630)
Q Consensus       417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~  494 (630)
                      ...++..+++++.|.+.++.+.++     +++  ...+....+++....|  ++.+|..+|++..+        ..+...
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~  201 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQI-----DED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTP  201 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCC-----SCC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-----CCc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCH
Confidence            677899999999999888776432     222  1122233344444455  69999999998544        334566


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHcCCCc
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSY-TLAIEFQQRAIDAWESHGPSA  573 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~  573 (630)
                      .+++.++.++..+|+|++|.+.+++++.        .+|...+++.+++.+...+|+. +.+.+++.+...    ..|.+
T Consensus       202 ~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~----~~p~h  269 (290)
T PF04733_consen  202 KLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ----SNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH----HTTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH----hCCCC
Confidence            7889999999999999999999999876        4455667899999999999998 455555555433    34443


Q ss_pred             h--hHHHHHHHHHHHHHH
Q 006812          574 Q--DELREARRLLEQLKI  589 (630)
Q Consensus       574 ~--~~~~~A~~~~~~~~~  589 (630)
                      +  .++.+....|+++..
T Consensus       270 ~~~~~~~~~~~~FD~~~~  287 (290)
T PF04733_consen  270 PLVKDLAEKEAEFDRAVA  287 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            3  456677777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.01  E-value=1.9e-08  Score=85.50  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=97.0

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      ...+..++.+|.++...| ++++|+..|++++.+.+.       +...+.++.++|.++...|++++|+.++++++.+  
T Consensus        32 ~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~-------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--  101 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEG-EYAEALQNYYEAMRLEID-------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--  101 (168)
T ss_pred             hHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcccc-------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            456788899999999999 999999999999987522       1245668899999999999999999999999987  


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchH
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR  246 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  246 (630)
                             .+...+....++.++..+|..+...|+++.|+..+.+++...++..+.+++
T Consensus       102 -------~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        102 -------NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             -------CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence                   233333344555666666666669999999999999999988887766653

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.01  E-value=4.1e-08  Score=84.16  Aligned_cols=164  Identities=14%  Similarity=0.027  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812          246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG  325 (630)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  325 (630)
                      |....+ .+++..+...|+-+.+..+..++...        ++.....+..+|......|++..|+..+.++..+     
T Consensus        64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----  129 (257)
T COG5010          64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----  129 (257)
T ss_pred             cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence            444455 78889999999999998888776543        2222334445799999999999999999998886     


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812          326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  405 (630)
                       .|....+++.+|.+|.+.|++++|..-|.++++..+..+.    +.+++|..+.-.|+++.|..++..+...-      
T Consensus       130 -~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~----~~nNlgms~~L~gd~~~A~~lll~a~l~~------  198 (257)
T COG5010         130 -APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS----IANNLGMSLLLRGDLEDAETLLLPAYLSP------  198 (257)
T ss_pred             -CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch----hhhhHHHHHHHcCCHHHHHHHHHHHHhCC------
Confidence             7889999999999999999999999999999998877654    88999999999999999999998876532      


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          406 SPEEVADAYSEISMQYESMNEFETAISLLKR  436 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  436 (630)
                        +....+..+++.+...+|++++|.....+
T Consensus       199 --~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         199 --AADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             --CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence              23446778999999999999999876543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.99  E-value=3.3e-07  Score=80.26  Aligned_cols=181  Identities=15%  Similarity=0.111  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN  286 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  286 (630)
                      ...++..|..+...|+|.+|+..|++.+...     +.++....+...+|.+++..|++++|+..+++.+...+     +
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP-----~   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP-----N   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-----T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----C
Confidence            3567789999999999999999999988655     56677788999999999999999999999999999877     4


Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES-  365 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-  365 (630)
                      ++....+++.+|.++.....-.  .                           ......+...+|+..|+..+...|+.. 
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~--~---------------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y  125 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGI--L---------------------------RSDRDQTSTRKAIEEFEELIKRYPNSEY  125 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHH--H----------------------------TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred             CcchhhHHHHHHHHHHHhCccc--h---------------------------hcccChHHHHHHHHHHHHHHHHCcCchH
Confidence            6677788888888776542111  0                           000111222333333333333333211 


Q ss_pred             ------------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 006812          366 ------------ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI  431 (630)
Q Consensus       366 ------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  431 (630)
                                  ...+.--..+|..|.+.|.+..|+..++.+++-+..     .+....++..++..|...|..+.|.
T Consensus       126 ~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~-----t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  126 AEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD-----TPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT-----SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----CchHHHHHHHHHHHHHHhCChHHHH
Confidence                        112334456789999999999999999998877643     3566788999999999999988543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.98  E-value=1.5e-08  Score=86.19  Aligned_cols=105  Identities=16%  Similarity=0.134  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ...+..+|.++...|++++|+..|++++.+.     ++++....++.++|.++...|++++|+.++++++.+.       
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------  102 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------  102 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence            5678999999999999999999999999852     3444566789999999999999999999999999853       


Q ss_pred             CHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHHc
Q 006812          532 HADSIEACQNLSKAYS-------SMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~  569 (630)
                       |.....+.++|.++.       ..|++++|...+.+++..++..
T Consensus       103 -~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        103 -PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             -cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence             333345555555555       9999999999999999988873

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=7.6e-07  Score=75.75  Aligned_cols=170  Identities=11%  Similarity=-0.016  Sum_probs=128.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP  407 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  407 (630)
                      ++....+-.+..+....|+.+-|..++++....++..+.    +...-|..+...|++++|+++|+..++-.        
T Consensus        49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R----V~~lkam~lEa~~~~~~A~e~y~~lL~dd--------  116 (289)
T KOG3060|consen   49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR----VGKLKAMLLEATGNYKEAIEYYESLLEDD--------  116 (289)
T ss_pred             chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHhhchhhHHHHHHHHhccC--------
Confidence            445556666677777889999999999988877755433    44556777888899999999998865432        


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      |....++...-.+...+|+.-+|++.+.+-++.+.       .+..+|..++.+|...|+|++|.-++++.+-       
T Consensus       117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll-------  182 (289)
T KOG3060|consen  117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-------NDQEAWHELAEIYLSEGDFEKAAFCLEELLL-------  182 (289)
T ss_pred             cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-------
Confidence            44445555666667788888899888887777542       2346899999999999999999999999886       


Q ss_pred             CCCccHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHH
Q 006812          488 PKHFGVGYIYNNLGAAYLELD---RPQSAAQVFAFAKDIM  524 (630)
Q Consensus       488 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~  524 (630)
                       ..|.....+..+|.+++-+|   +++-|.++|.+++++.
T Consensus       183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence             34666667778888888776   4677889999999964

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.97  E-value=3.5e-08  Score=84.13  Aligned_cols=122  Identities=16%  Similarity=0.133  Sum_probs=89.3

Q ss_pred             HHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHH
Q 006812           96 LQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSD  175 (630)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  175 (630)
                      .+.+..+.....++..+..++.+|..+...| ++++|+.+|++++.+.+..       +..+.++..+|.++...|++++
T Consensus        19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~-------~~~~~~~~~la~~~~~~g~~~~   90 (172)
T PRK02603         19 ADLILKILPINKKAKEAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDP-------NDRSYILYNMGIIYASNGEHDK   90 (172)
T ss_pred             HHHHHHHcccccHhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHcCCHHH
Confidence            3334444555566788889999999999999 9999999999999876432       2346688999999999999999


Q ss_pred             HHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHHh
Q 006812          176 SLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR-------REEALEHLQKCLEIKELIL  241 (630)
Q Consensus       176 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~  241 (630)
                      |+..+++++.+.                |.....+..+|.++...|+       ++.|+..++++++..+...
T Consensus        91 A~~~~~~al~~~----------------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~  147 (172)
T PRK02603         91 ALEYYHQALELN----------------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI  147 (172)
T ss_pred             HHHHHHHHHHhC----------------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence            999999999871                2223445566777766555       5555555566555554443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=5.1e-07  Score=76.14  Aligned_cols=201  Identities=15%  Similarity=0.127  Sum_probs=129.6

Q ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812          364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK  443 (630)
Q Consensus       364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  443 (630)
                      +....+..|..-+..|...++|++|..++.++.+-.+.+..  ....+.++...+.+......+.++..+++++..++.+
T Consensus        26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE  103 (308)
T ss_pred             CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33334555666667777778888888888888776665442  2345667777777777888888888888888888777


Q ss_pred             CCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          444 LPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       444 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      ...+ .+.+.++-.-|. .....++++|+.+|++++.+.+..  .........+...+.++.+..++++|...+.+-..+
T Consensus       104 ~Gsp-dtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~  179 (308)
T KOG1585|consen  104 CGSP-DTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA  179 (308)
T ss_pred             hCCc-chHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence            6332 222223333333 345667888888888888876553  222333455667788888888888888877776655


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          524 MDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                      ..+.-  ..+.....+.....+|.-..+|..|...++...++-.-.+++
T Consensus       180 ~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se  226 (308)
T KOG1585|consen  180 ADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE  226 (308)
T ss_pred             HHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence            54432  223333455555666666778888888888876654444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.96  E-value=2.5e-07  Score=82.83  Aligned_cols=178  Identities=11%  Similarity=-0.027  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      ...++..|..++..| ++++|+..|++.+...+.       ++....+...+|.+|++.+++++|+..+++.++.     
T Consensus        32 ~~~~Y~~A~~~~~~g-~y~~Ai~~f~~l~~~yP~-------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----   98 (243)
T PRK10866         32 PSEIYATAQQKLQDG-NWKQAITQLEALDNRYPF-------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----   98 (243)
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----
Confidence            345677888888888 999999999998886632       2456667889999999999999999999999998     


Q ss_pred             hcCCCCCCccchhhHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHHh---------ccc
Q 006812          192 EEGLGGSVEDIKPIMHAVHLELANVKTAMG---------------R---REEALEHLQKCLEIKELIL---------EED  244 (630)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~---------~~~  244 (630)
                          +|+++..    ..+++.+|.++...+               +   ..+|+..|++.++..+...         ..-
T Consensus        99 ----~P~~~~~----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l  170 (243)
T PRK10866         99 ----NPTHPNI----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL  170 (243)
T ss_pred             ----CcCCCch----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence                5555543    467778888764443               1   2456677777665542210         000


Q ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812          245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE  315 (630)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  315 (630)
                      ...++.--..+|..|.+.|.|..|+.-++.+++.++     +.+....++..++..|...|..++|..+..
T Consensus       171 ~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        171 KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            112234445678899999999999999999998776     456677888899999999999998877553

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.3e-06  Score=73.73  Aligned_cols=218  Identities=14%  Similarity=0.040  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN  286 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  286 (630)
                      +..|..-+.+|....+|++|..++.++.+-.+..  ...-..+.++-..+.+......+.++..+|+++..++.+..   
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---  105 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---  105 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---
Confidence            4556667788888999999999999999877654  33334577888889999999999999999999999998764   


Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--c
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK--E  364 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~  364 (630)
                      .|+.+..-..-+--.....++++|+..|++++.+...-+........+...+.++.+..++++|-..+.+-......  .
T Consensus       106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            33333333333444556779999999999999998887766777788888999999999999998888775544332  2


Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812          365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL  434 (630)
Q Consensus       365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  434 (630)
                      .+.....+.....+|....+|..|..+++..-++-.-.    .++...++.+|-..| ..|+.++....+
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~----~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL----KSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc----ChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            23334456666677788889999999998865543222    245566777766655 567777765554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.92  E-value=1.7e-08  Score=82.59  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ......+|..+...|++++|...+++++..        +|.....+..+|.++...|++++|..++++++.+        
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   80 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--------   80 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence            456789999999999999999999998873        4666778999999999999999999999999883        


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      +|.....++.+|.+|...|++++|+.+++++++..
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45666889999999999999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.92  E-value=3.9e-08  Score=83.84  Aligned_cols=122  Identities=20%  Similarity=0.228  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      +..+..+|..+...|++++|+.+|++++.+.     ++.+....++..+|.++...|++++|+.++++++.+        
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------  101 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------  101 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            5678999999999999999999999999853     233445678999999999999999999999999984        


Q ss_pred             CHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812          532 HADSIEACQNLSKAYSSMGS-------YTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ  586 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~  586 (630)
                      +|.....+..+|.++...|+       +++|+..++++++.+.......++++.++...+..
T Consensus       102 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  163 (172)
T PRK02603        102 NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT  163 (172)
T ss_pred             CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence            35556677788888877654       67777777777777776444444555555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.90  E-value=2.4e-07  Score=76.31  Aligned_cols=123  Identities=18%  Similarity=0.216  Sum_probs=97.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh
Q 006812          303 GLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ  382 (630)
Q Consensus       303 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~  382 (630)
                      ..++...+...++   .+....+..+....+.+.+|.+++..|++++|...|+.++... .++.....+...++.++...
T Consensus        23 ~~~~~~~~~~~~~---~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~   98 (145)
T PF09976_consen   23 QAGDPAKAEAAAE---QLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQ   98 (145)
T ss_pred             HCCCHHHHHHHHH---HHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHc
Confidence            4666666655444   3444555556678888999999999999999999999999866 34455567888999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTL  438 (630)
Q Consensus       383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  438 (630)
                      |++++|+..++...         ..+.....+..+|.+|...|++++|+..|++++
T Consensus        99 ~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   99 GQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999999986521         223455678889999999999999999999874

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.90  E-value=1.2e-07  Score=73.41  Aligned_cols=116  Identities=19%  Similarity=0.182  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      +.+.+|.++-..|+.++|+.+|++++.     .|...+....++..+|..+..+|++++|+..+++++.-+     |+.+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~   72 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDE   72 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcc
Confidence            678899999999999999999999998     444556667889999999999999999999999998722     1222


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812          534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ  586 (630)
Q Consensus       534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~  586 (630)
                      ....+...++.++...|++++|+..+-.++.-       ....+++|+..|-+
T Consensus        73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~-------~~~~y~ra~~~ya~  118 (120)
T PF12688_consen   73 LNAALRVFLALALYNLGRPKEALEWLLEALAE-------TLPRYRRAIRFYAD  118 (120)
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence            25566677899999999999999999887742       23378888887753

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=2.1e-08  Score=87.54  Aligned_cols=103  Identities=19%  Similarity=0.155  Sum_probs=91.7

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      +..++.-+-.-|.-+...+ +|.+|+..|.+|+++.+          ..+..|.+.+.+|.++|.++.|++.++.++.+ 
T Consensus        77 ~~~~AE~LK~eGN~~m~~~-~Y~eAv~kY~~AI~l~P----------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-  144 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNK-DYQEAVDKYTEAIELDP----------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-  144 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCC----------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-
Confidence            3456677778888888888 99999999999998863          34678899999999999999999999999999 


Q ss_pred             hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK  237 (630)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  237 (630)
                                     .|.+..+|..||.+|..+|++.+|++.|+++|++.
T Consensus       145 ---------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld  179 (304)
T KOG0553|consen  145 ---------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD  179 (304)
T ss_pred             ---------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence                           67788999999999999999999999999999765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.89  E-value=8.6e-08  Score=78.45  Aligned_cols=108  Identities=19%  Similarity=0.091  Sum_probs=90.2

Q ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      .+|........+|..+...|++++|...+++++...+        .....+..+|.++...|++++|+.++++++.+   
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---   80 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--------YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---   80 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            3444567788999999999999999999999887533        23467788999999999999999999988776   


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  365 (630)
                         .|.....+..+|.++...|++++|+..++++++..+.+.
T Consensus        81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence               567788889999999999999999999999998766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.88  E-value=2.3e-07  Score=76.47  Aligned_cols=122  Identities=16%  Similarity=0.058  Sum_probs=94.2

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCCCC-chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 006812          423 SMNEFETAISLLKRTLALLEKLPQAQH-SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLG  501 (630)
Q Consensus       423 ~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  501 (630)
                      ..++...+...+++.+.-     .+.. ....+...+|.++...|++++|...|+.++..     .++......+...|+
T Consensus        23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLA   92 (145)
T ss_pred             HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence            578888887777766553     1222 22456788999999999999999999999982     123333456778899


Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          502 AAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       502 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                      .++...|++++|+..++...         ..+....++..+|.+|...|++++|+..|++|+
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999996621         234445678889999999999999999999875

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.87  E-value=0.0002  Score=74.51  Aligned_cols=429  Identities=13%  Similarity=0.014  Sum_probs=258.2

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHh-hHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          114 VGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVM-GSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       114 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      ..+.++.++...+  +..|....++.++..+..  +.   .....++..+ ...+...+++..|++.++.........++
T Consensus       102 ~~~ll~~i~~~~~--~~~a~~~l~~~I~~~~~~--~~---~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d  174 (608)
T PF10345_consen  102 CQFLLARIYFKTN--PKAALKNLDKAIEDSETY--GH---SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD  174 (608)
T ss_pred             HHHHHHHHHHhcC--HHHHHHHHHHHHHHHhcc--Cc---hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence            3445677788775  444999999999888653  11   1233333333 33333347999999999999888554322


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHH--HHHHhcCHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI--LEEDSRELGVANRDLAE--AFVAVLNFKEA  268 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A  268 (630)
                      .          .....+....+.+....+..+++++..+++.......  -+..++....++..+-.  ++...|+++.+
T Consensus       175 ~----------~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~  244 (608)
T PF10345_consen  175 P----------AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNS  244 (608)
T ss_pred             H----------HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            2          2334445556777788888899999999987766643  11112333334444433  45566777777


Q ss_pred             HHHHHHHHHHHhhhcCCC-----------------------C-H----------HHHHHHHHHHHHHhccccHHHHHHHH
Q 006812          269 LPFGLKALEIHKKGLGHN-----------------------S-V----------EVAHDRRLLGVIYSGLEEHQKALEQN  314 (630)
Q Consensus       269 ~~~~~~al~~~~~~~~~~-----------------------~-~----------~~~~~~~~la~~~~~~g~~~~A~~~~  314 (630)
                      ....++.-..........                       . +          -.+-+|..-|......+..++|.+++
T Consensus       245 ~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~  324 (608)
T PF10345_consen  245 KQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFL  324 (608)
T ss_pred             HHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHH
Confidence            776655444333221110                       0 1          12333444466667777778999999


Q ss_pred             HHHHHHHHHcC-C--C-hh----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-----hHHH
Q 006812          315 ELSQKVLKTWG-L--S-SE----------------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES-----ETRA  369 (630)
Q Consensus       315 ~~a~~~~~~~~-~--~-~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~  369 (630)
                      +++++..+... .  . +.                .......++.+.+-.+++..|......+.....+.+     ...+
T Consensus       325 ~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  404 (608)
T PF10345_consen  325 EKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYP  404 (608)
T ss_pred             HHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhH
Confidence            99999987765 1  1 10                122344567777889999999999998877654432     2346


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812          370 LVFISMGKALCNQEKFADAKRCLEIACGILDKK---ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ  446 (630)
Q Consensus       370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  446 (630)
                      ..++..|..+...|+.+.|..+|.+..-.....   .+....-..-+..++..++...+.-.....-+.+.++..+....
T Consensus       405 ~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~  484 (608)
T PF10345_consen  405 LLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCS  484 (608)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcccc
Confidence            678888999999999999999998544222111   11122233445566777777666544422222333332222111


Q ss_pred             -CCCchhHHHH-HHHHHHH--HcCChhhHHHHHHHHHHHH-HHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006812          447 -AQHSEGSVSA-RIGWLLL--LTGKVPQAIPYLESAAERL-KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK  521 (630)
Q Consensus       447 -~~~~~~~~~~-~la~~~~--~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  521 (630)
                       ........+. .+-..+.  ..-...++...+.++++.. ...  .+......++..++..++ .|+..+.......+.
T Consensus       485 ~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~--~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~  561 (608)
T PF10345_consen  485 NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL--GNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAF  561 (608)
T ss_pred             CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence             1111222222 2222222  2234458999999999988 443  234445556777888777 899999888888888


Q ss_pred             HHHHHhcCCCCHHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          522 DIMDVSLGPHHADSIE---ACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       522 ~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      .+..+.  ++..+...   +-..++..+...|+.++|.....+...
T Consensus       562 ~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  562 QLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            777654  11122111   333567779999999999998877654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=5.6e-08  Score=85.00  Aligned_cols=122  Identities=17%  Similarity=0.194  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP  488 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (630)
                      ..+..+-.-|.-....++|.+|+..|.+||++     .+  .++..|.+.+.+|.++|.++.|++-.+.++.+       
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-----~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------  144 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL-----DP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------  144 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence            34566677788889999999999999999997     22  23457799999999999999999999999984       


Q ss_pred             CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH
Q 006812          489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYT  553 (630)
Q Consensus       489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  553 (630)
                       +|....+|..||.+|..+|++++|++.|++++++        +|+......+|..+-.+.++..
T Consensus       145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence             5888999999999999999999999999999994        3555566667777666666655

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.86  E-value=0.0001  Score=74.81  Aligned_cols=265  Identities=14%  Similarity=0.010  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          209 VHLELANVKTAMGRREEALEHLQKCLEIKELI-LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       209 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .....++......++.+|..+..++....+.. ........+......|.+....|++++|+++.+.++......   ..
T Consensus       417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~  493 (894)
T COG2909         417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AY  493 (894)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cc
Confidence            33456788888999999999988876544321 001112335555566888889999999999999999876642   33


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhhhcc
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE--EAINTLKGVVRQTEKES  365 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~~~~~  365 (630)
                      .....++..+|.+..-.|++++|..+..++.++.+..+.......+....+.+...+|+..  +....+...-.......
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~  573 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK  573 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            3556778899999999999999999999999999998888888888888999999999433  33333333322221222


Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812          366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP  445 (630)
Q Consensus       366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  445 (630)
                      +.........+.++...-+++.+..-....+++...... .+......+..++.++...|++++|...+.+.........
T Consensus       574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~-~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~  652 (894)
T COG2909         574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTP-QPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ  652 (894)
T ss_pred             ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhccc-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence            221222233333333333466666666666655543322 2223334446899999999999999999999888765542


Q ss_pred             CCCCchh--HHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812          446 QAQHSEG--SVSARIGWLLLLTGKVPQAIPYLESAA  479 (630)
Q Consensus       446 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al  479 (630)
                        .+...  .++.........+|+..+|.....+..
T Consensus       653 --~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         653 --YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             --CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence              33332  222333445567899999988877743

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.86  E-value=5e-08  Score=89.61  Aligned_cols=260  Identities=17%  Similarity=0.097  Sum_probs=159.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 006812          215 NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR  294 (630)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  294 (630)
                      .-++..|+|..++.-++. .       ..+.+........+.++|..+|+++..+.-...          ..+|. ..+.
T Consensus         9 rn~fy~G~Y~~~i~e~~~-~-------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av   69 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEASL-K-------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAV   69 (290)
T ss_dssp             HHHHCTT-HHHHCHHHHC-H-------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHH
T ss_pred             HHHHHhhhHHHHHHHhhc-c-------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHH
Confidence            345678999988865541 1       123334456677788899999988765533211          12222 2334


Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812          295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS--SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF  372 (630)
Q Consensus       295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  372 (630)
                      ..++..+...++.+.++..++.      .....  ..........|.++...|++++|++.+.+.     .+    ....
T Consensus        70 ~~la~y~~~~~~~e~~l~~l~~------~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~----lE~~  134 (290)
T PF04733_consen   70 RLLAEYLSSPSDKESALEELKE------LLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GS----LELL  134 (290)
T ss_dssp             HHHHHHHCTSTTHHCHHHHHHH------CCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TC----HHHH
T ss_pred             HHHHHHHhCccchHHHHHHHHH------HHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc----ccHH
Confidence            5566666554555555443321      11112  223445666788888999999999888653     11    2355


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN--EFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      .....++...++++.|.+.++.+.++.        .+...+....+++....|  ++.+|...|++..+       ...+
T Consensus       135 al~Vqi~L~~~R~dlA~k~l~~~~~~~--------eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-------~~~~  199 (290)
T PF04733_consen  135 ALAVQILLKMNRPDLAEKELKNMQQID--------EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-------KFGS  199 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCCS--------CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-------CS--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-------ccCC
Confidence            566788999999999999888764432        122222223333444444  68899999988533       2223


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHHhcC
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS-AAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~~~~~~  529 (630)
                      .+.+++.++.++..+|+|++|.+.+++++.        .+|....++.+++.+....|+..+ +.+++.+....     .
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~  266 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----N  266 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----T
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----C
Confidence            456789999999999999999999999875        456677899999999999999844 55565554432     3


Q ss_pred             CCCHHHH
Q 006812          530 PHHADSI  536 (630)
Q Consensus       530 ~~~~~~~  536 (630)
                      |.||.+.
T Consensus       267 p~h~~~~  273 (290)
T PF04733_consen  267 PNHPLVK  273 (290)
T ss_dssp             TTSHHHH
T ss_pred             CCChHHH
Confidence            4566543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.2e-05  Score=67.53  Aligned_cols=196  Identities=16%  Similarity=0.149  Sum_probs=130.2

Q ss_pred             hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH
Q 006812          169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSREL  248 (630)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  248 (630)
                      -.+++++|.++|.++-.+                              |....+|+.|=..|.++-++..+.  .+..+.
T Consensus        26 g~~k~eeAadl~~~Aan~------------------------------yklaK~w~~AG~aflkaA~~h~k~--~skhDa   73 (288)
T KOG1586|consen   26 GSNKYEEAAELYERAANM------------------------------YKLAKNWSAAGDAFLKAADLHLKA--GSKHDA   73 (288)
T ss_pred             CCcchHHHHHHHHHHHHH------------------------------HHHHHhHHHHHHHHHHHHHHHHhc--CCchhH
Confidence            345677777777666554                              333444555555555555555443  333445


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHcCCC
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL-EEHQKALEQNELSQKVLKTWGLS  327 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~  327 (630)
                      +.+|...+.+|.+. +.++|..+++++++++....  .....+..+..+|.+|..- .++++|+.+|+++-+..+.-...
T Consensus        74 at~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~  150 (288)
T KOG1586|consen   74 ATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV  150 (288)
T ss_pred             HHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence            66677667776554 88999999999999887643  2234455566788888765 89999999999999887665444


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET---RALVFISMGKALCNQEKFADAKRCLEIACGIL  399 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  399 (630)
                      ......+...+..-...++|.+|+..|+++....-.++..   .-..+..-|.++.-..+.-.+...+++..++.
T Consensus       151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d  225 (288)
T KOG1586|consen  151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD  225 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence            5555667777888889999999999999987755443321   12234455666666677666666666554443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.80  E-value=6.3e-08  Score=77.34  Aligned_cols=105  Identities=20%  Similarity=0.203  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      .+++.+|..+...|++++|+..|++++..     .++++....+++.+|.++...|++++|+.+|++++...     +.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            46789999999999999999999999873     23445556788999999999999999999999998753     344


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          533 ADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      +....++..+|.++...|++++|..+++++++..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence            44567899999999999999999999999998743

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.76  E-value=3e-08  Score=72.78  Aligned_cols=84  Identities=20%  Similarity=0.247  Sum_probs=66.4

Q ss_pred             HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812          464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS  543 (630)
Q Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  543 (630)
                      .+|++++|+.+++++++..     +..+ ....+..+|.+|+..|++++|+..+++ ....        +......+.+|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a   65 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA   65 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence            3689999999999999853     2122 555777899999999999999999998 4422        34456777889


Q ss_pred             HHHHhcCCHHHHHHHHHHH
Q 006812          544 KAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       544 ~~~~~~g~~~~A~~~~~~a  562 (630)
                      .++..+|++++|++.++++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.75  E-value=2e-07  Score=74.37  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      ..++.+|..+...|++++|+..|.+++...     +.++ ...++..+|.++...|++++|+.+|++++..     .+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            567889999999999999999999998752     2222 2457789999999999999999999999973     2455


Q ss_pred             ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      +....++..+|.++...|++++|+.++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            556778999999999999999999999999985

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.72  E-value=7.5e-07  Score=83.37  Aligned_cols=151  Identities=19%  Similarity=0.168  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK  489 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (630)
                      ...+.+..+..+...|++++|+..++..+..   .    +.+...+...+.++...++..+|.+.+++++..        
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~----P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------  369 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA---Q----PDNPYYLELAGDILLEANKAKEAIERLKKALAL--------  369 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence            3467788888999999999999999986553   2    123456678899999999999999999999983        


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      .|.......++|.+|...|++.+|+..+++.+.        +.|+....|..||..|..+|+..+|...+.+....    
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~----  437 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL----  437 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh----
Confidence            455566788999999999999999999999877        67788889999999999999999998888777653    


Q ss_pred             CCCchhHHHHHHHHHHHHHHHh
Q 006812          570 GPSAQDELREARRLLEQLKIKA  591 (630)
Q Consensus       570 ~~~~~~~~~~A~~~~~~~~~~~  591 (630)
                          .|.+++|+..+....++.
T Consensus       438 ----~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         438 ----AGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             ----CCCHHHHHHHHHHHHHhc
Confidence                366777777777766654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.72  E-value=0.00032  Score=71.37  Aligned_cols=330  Identities=14%  Similarity=0.053  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN  286 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  286 (630)
                      ...+..-+..+...|...+|+++.-.|         .+....+..+.+.+.-....++..--..    .++..+...-..
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA---------~d~~~aa~lle~~~~~L~~~~~lsll~~----~~~~lP~~~l~~  413 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAA---------GDPEMAADLLEQLEWQLFNGSELSLLLA----WLKALPAELLAS  413 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhC---------CCHHHHHHHHHhhhhhhhcccchHHHHH----HHHhCCHHHHhh
Confidence            344555566667777777777764432         2222223334444444444444332221    111111100012


Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                      +|....   ..+.......++.+|.....++...++..+..   ...+...--.|.+....|++++|+++.+.++...+.
T Consensus       414 ~P~Lvl---l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~  490 (894)
T COG2909         414 TPRLVL---LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE  490 (894)
T ss_pred             CchHHH---HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence            333222   23666677889999998888877765553222   223344445578888999999999999999998877


Q ss_pred             cc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          364 ES-ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE  442 (630)
Q Consensus       364 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  442 (630)
                      +. .....++..+|.+..-.|++++|..+...+.++......  ......+....+.++..+|+...|.  -.++.....
T Consensus       491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~  566 (894)
T COG2909         491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIR  566 (894)
T ss_pred             ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHH
Confidence            54 344667888999999999999999999999998876542  2334455666788899999433332  222222221


Q ss_pred             hCCCCCCch----hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812          443 KLPQAQHSE----GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA  518 (630)
Q Consensus       443 ~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  518 (630)
                      .......+.    ..+...+...+.+   ++.+..-....+++.... .+........+..|+.++...|++++|...+.
T Consensus       567 ~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~  642 (894)
T COG2909         567 EQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLD  642 (894)
T ss_pred             HHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            111111111    1222333333333   666666666666643322 11111222233589999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812          519 FAKDIMDVSLGPHHADSI-EACQNLSKAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       519 ~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a  562 (630)
                      +...+....-  .+++.. .++.........+|++.+|.....+.
T Consensus       643 ~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         643 ELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            9888765421  233333 34444455567789999998888773

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.71  E-value=7.1e-07  Score=69.07  Aligned_cols=101  Identities=25%  Similarity=0.239  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      .+.+.+|.++-..|+.++|+.+|++++..     +...+ ...++..+|..+...|++++|+..+++++.-+     ++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence            46788999999999999999999999884     22222 25678999999999999999999999998721     222


Q ss_pred             ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      +........++.++...|++++|+..+-.++.
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            23555667788999999999999999988775

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.70  E-value=2.2e-07  Score=68.23  Aligned_cols=83  Identities=16%  Similarity=0.247  Sum_probs=57.1

Q ss_pred             cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Q 006812          344 LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES  423 (630)
Q Consensus       344 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  423 (630)
                      +|++++|+.+++++++..+.++  ....+..+|.++...|++++|+.++++ ....        +........+|.++..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLARCLLK   70 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHHHHHH
Confidence            5778888888888887666432  244666688888888888888888877 3332        2334555666888888


Q ss_pred             cCCHHHHHHHHHHH
Q 006812          424 MNEFETAISLLKRT  437 (630)
Q Consensus       424 ~g~~~~A~~~~~~a  437 (630)
                      +|++++|++.++++
T Consensus        71 l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   71 LGKYEEAIKALEKA   84 (84)
T ss_dssp             TT-HHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhcC
Confidence            88888888888764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2.9e-05  Score=66.91  Aligned_cols=273  Identities=16%  Similarity=0.132  Sum_probs=163.3

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812          257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEID  336 (630)
Q Consensus       257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  336 (630)
                      .-++..|+|..++..-++.-..       .  ........+...|..+|++...+.-...        +. .....+...
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~-------~--~~~e~d~y~~raylAlg~~~~~~~eI~~--------~~-~~~lqAvr~   77 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSS-------K--TDVELDVYMYRAYLALGQYQIVISEIKE--------GK-ATPLQAVRL   77 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhccc-------c--chhHHHHHHHHHHHHccccccccccccc--------cc-CChHHHHHH
Confidence            3456678888777655443211       1  2223344567777778877654432211        11 112223333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 006812          337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSE  416 (630)
Q Consensus       337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  416 (630)
                      ++.....-++.++-+.-..+.+...  ...........-|.+|...|++++|.+.......+             .+...
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a~~--~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al  142 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVADS--TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAAL  142 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHhh--ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHH
Confidence            4444433444343333333322211  11111224445578899999999999887763222             22333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812          417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFG  492 (630)
Q Consensus       417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (630)
                      --.++.++.+++-|...++++.++.+.         .++..||..|.+    .+++.+|.-+|++.-+        ..+.
T Consensus       143 ~VqI~lk~~r~d~A~~~lk~mq~ided---------~tLtQLA~awv~la~ggek~qdAfyifeE~s~--------k~~~  205 (299)
T KOG3081|consen  143 NVQILLKMHRFDLAEKELKKMQQIDED---------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--------KTPP  205 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchH---------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--------ccCC
Confidence            345677888899999888888776221         256667766655    3456777777765543        3456


Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          493 VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                      +...++.++.|...+|+|++|...++.++.        ..+...+++.|+..+-...|...++.+-+-.-   .....+.
T Consensus       206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q---Lk~~~p~  274 (299)
T KOG3081|consen  206 TPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLSQ---LKLSHPE  274 (299)
T ss_pred             ChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH---HHhcCCc
Confidence            677889999999999999999999999998        44555688899999888999887776544332   2333333


Q ss_pred             c--hhHHHHHHHHHHHHHHH
Q 006812          573 A--QDELREARRLLEQLKIK  590 (630)
Q Consensus       573 ~--~~~~~~A~~~~~~~~~~  590 (630)
                      +  ..++.+...-|+++...
T Consensus       275 h~~vk~~~ekeaeFDrl~~q  294 (299)
T KOG3081|consen  275 HPFVKHLNEKEAEFDRLVLQ  294 (299)
T ss_pred             chHHHHHHHHHHHHHHHHHH
Confidence            2  24556666666665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=2.3e-06  Score=80.27  Aligned_cols=149  Identities=18%  Similarity=0.011  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      ...+..+..++..|++++|+..+...+        .+.|+....+...+.++...|+..+|.+.+++++...+.     .
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~--------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-----~  373 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLI--------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-----S  373 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----c
Confidence            566778888888999999998888755        333444566777888899999999999999998886442     2


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET  367 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  367 (630)
                         .....++|..+.+.|++.+|+..++....      .+|.....|..||..|..+|+..+|...+             
T Consensus       374 ---~~l~~~~a~all~~g~~~eai~~L~~~~~------~~p~dp~~w~~LAqay~~~g~~~~a~~A~-------------  431 (484)
T COG4783         374 ---PLLQLNLAQALLKGGKPQEAIRILNRYLF------NDPEDPNGWDLLAQAYAELGNRAEALLAR-------------  431 (484)
T ss_pred             ---cHHHHHHHHHHHhcCChHHHHHHHHHHhh------cCCCCchHHHHHHHHHHHhCchHHHHHHH-------------
Confidence               34456778999999999988887765444      35777888888888888888877655444             


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGIL  399 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  399 (630)
                              +..|...|++++|+..+..+.+..
T Consensus       432 --------AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         432 --------AEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             --------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence                    334455666666666666665544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.67  E-value=9.3e-08  Score=67.24  Aligned_cols=64  Identities=30%  Similarity=0.427  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 006812          494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG-SYTLAIEFQQRAIDA  565 (630)
Q Consensus       494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  565 (630)
                      +.++..+|.++...|++++|+.+|++++++        +|+...++.++|.+|..+| ++++|++.+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            568899999999999999999999999994        4777789999999999999 799999999999976

...

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=1.2e-05  Score=67.56  Aligned_cols=196  Identities=17%  Similarity=0.073  Sum_probs=121.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhH
Q 006812          127 GDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIM  206 (630)
Q Consensus       127 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  206 (630)
                      +.+++|.++|.++-.++.-                        ..+|+.|=..|.++-++..+.....          ..
T Consensus        28 ~k~eeAadl~~~Aan~ykl------------------------aK~w~~AG~aflkaA~~h~k~~skh----------Da   73 (288)
T KOG1586|consen   28 NKYEEAAELYERAANMYKL------------------------AKNWSAAGDAFLKAADLHLKAGSKH----------DA   73 (288)
T ss_pred             cchHHHHHHHHHHHHHHHH------------------------HHhHHHHHHHHHHHHHHHHhcCCch----------hH
Confidence            4788888888887655532                        2233333334444444333322211          22


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhcCC
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV-LNFKEALPFGLKALEIHKKGLGH  285 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~  285 (630)
                      +..|...+.+|. .++.++|+.+++++++++...  .....-+.-+..+|.+|... .++++|+.+|+++-+.+..-  .
T Consensus        74 at~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--e  148 (288)
T KOG1586|consen   74 ATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--E  148 (288)
T ss_pred             HHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--h
Confidence            344444455554 448888999999998888665  33344466677889999776 89999999999999987732  1


Q ss_pred             CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812          286 NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  362 (630)
                      .....-.++...+..-...++|.+|+..|++.....  ++.+   ...-.-++.-|.+++...+.-.+...+++-.+..|
T Consensus       149 s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s--~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP  226 (288)
T KOG1586|consen  149 SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS--LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP  226 (288)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence            222333556667777888999999999998765431  2222   22223344556777776776666666665555444


Q ss_pred             h
Q 006812          363 K  363 (630)
Q Consensus       363 ~  363 (630)
                      .
T Consensus       227 ~  227 (288)
T KOG1586|consen  227 A  227 (288)
T ss_pred             c
Confidence            3

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.65  E-value=2.8e-07  Score=88.23  Aligned_cols=96  Identities=11%  Similarity=0.041  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 006812          455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD  534 (630)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  534 (630)
                      +...|..++..|+|++|+.+|++++++        .|....++.++|.+|..+|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            456688889999999999999999983        4666778999999999999999999999999994        456


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          535 SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       535 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      ...+++.+|.+|..+|++++|+..|++++++.
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  100 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA  100 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            66899999999999999999999999999764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.64  E-value=5.3e-07  Score=86.31  Aligned_cols=113  Identities=13%  Similarity=0.168  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812          414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV  493 (630)
Q Consensus       414 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  493 (630)
                      +...|...+..|++++|+.+|.+++.+     .+.  ...++.++|.++...|++++|+..+++++.+        .|..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPN--NAELYADRAQANIKLGNFTEAVADANKAIEL--------DPSL   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCC
Confidence            445678888999999999999999986     222  3458899999999999999999999999984        3666


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812          494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM  549 (630)
Q Consensus       494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  549 (630)
                      ..+++.+|.++..+|++++|+..|++++.+.        |....+...++.+...+
T Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--------P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         70 AKAYLRKGTACMKLEEYQTAKAALEKGASLA--------PGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999853        33334555555554433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.64  E-value=2.1e-05  Score=65.35  Aligned_cols=225  Identities=16%  Similarity=0.039  Sum_probs=141.9

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      ..+..++..|..|-..|-+.-|...|.+++.+                .|..+.+++.+|..+...|+|+.|.+.|...+
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai----------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~  126 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL  126 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc----------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence            46667788888999999999999999999998                56667888999999999999999999999988


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN  314 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  314 (630)
                      ++.        |..-.+..+.|..++.-|+|.-|.+-+.+-..-.     +++|-..- |..   +-...-+..+|...+
T Consensus       127 ELD--------p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-----~~DPfR~L-WLY---l~E~k~dP~~A~tnL  189 (297)
T COG4785         127 ELD--------PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-----PNDPFRSL-WLY---LNEQKLDPKQAKTNL  189 (297)
T ss_pred             ccC--------CcchHHHhccceeeeecCchHhhHHHHHHHHhcC-----CCChHHHH-HHH---HHHhhCCHHHHHHHH
Confidence            543        4445677888999999999999998776654422     23332211 111   112233566665543


Q ss_pred             HHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHHHHHhhccHHHHHH
Q 006812          315 ELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE---SETRALVFISMGKALCNQEKFADAKR  390 (630)
Q Consensus       315 ~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~  390 (630)
                      .+-   .+..... +....+-..+       |+..+ ...++++......+   ......+++.+|..+...|+.++|..
T Consensus       190 ~qR---~~~~d~e~WG~~iV~~yL-------gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~  258 (297)
T COG4785         190 KQR---AEKSDKEQWGWNIVEFYL-------GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA  258 (297)
T ss_pred             HHH---HHhccHhhhhHHHHHHHH-------hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            321   1111111 2222222222       22211 12233333322211   23456789999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH
Q 006812          391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEF  427 (630)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  427 (630)
                      .|+-++....-..    .+.--+...++.+...+.+.
T Consensus       259 LfKLaiannVynf----VE~RyA~~EL~~l~q~~~~l  291 (297)
T COG4785         259 LFKLAVANNVYNF----VEHRYALLELSLLGQDQDDL  291 (297)
T ss_pred             HHHHHHHHhHHHH----HHHHHHHHHHHHhccccchh
Confidence            9998876543221    23334555566555544433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.62  E-value=8.6e-05  Score=69.62  Aligned_cols=253  Identities=11%  Similarity=0.083  Sum_probs=149.7

Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhH
Q 006812          110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGR  189 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  189 (630)
                      +....+++.|.++++.. .+..|++.....+...+..  ..   ...+..-...-..+....+-++|+.++.-.-.+...
T Consensus        98 ~~t~~~yn~aVi~yh~~-~~g~a~~~~~~lv~r~e~l--e~---~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~  171 (696)
T KOG2471|consen   98 QGTVMDYNFAVIFYHHE-ENGSAMQLSSNLVSRTESL--ES---SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAE  171 (696)
T ss_pred             cchHHhhhhheeeeeHh-hcchHHHhhhhHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33567788888888888 8999999888877666554  11   112222233445566667777887765433222111


Q ss_pred             hhhc----CC--CCCCccchhhHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 006812          190 LEEE----GL--GGSVEDIKPIMH-----------AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVAN  252 (630)
Q Consensus       190 ~~~~----~~--~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  252 (630)
                      ....    ..  +....+..|..+           .+...-...+..+.+..-+..-.+.++.+.     .   +...++
T Consensus       172 ~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-----~---~s~~~l  243 (696)
T KOG2471|consen  172 KRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-----Q---DSSMAL  243 (696)
T ss_pred             hhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-----C---CCcHHH
Confidence            1100    00  000001111111           111111222223333333322222222111     1   224566


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHc--CCC
Q 006812          253 RDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE--VAHDRRLLGVIYSGLEEHQKALEQNELSQK-VLKTW--GLS  327 (630)
Q Consensus       253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~--~~~  327 (630)
                      ...+..++..|++.+|.+.+... .+.+...+...+.  ....++++|.+++..|.|.-+..+|.+|++ ....+  |..
T Consensus       244 ~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~  322 (696)
T KOG2471|consen  244 LLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLK  322 (696)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence            77788999999999999887543 2222222222232  334568999999999999999999999996 43332  211


Q ss_pred             ---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh
Q 006812          328 ---------SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN  381 (630)
Q Consensus       328 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~  381 (630)
                               ......+++.|..|...|+.-.|.+.|.++...+..++.    .|..|+.++..
T Consensus       323 ~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr----lWLRlAEcCim  381 (696)
T KOG2471|consen  323 PAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR----LWLRLAECCIM  381 (696)
T ss_pred             CCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHH
Confidence                     124567889999999999999999999999998877755    78888877754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.61  E-value=7.7e-07  Score=80.22  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=88.9

Q ss_pred             HHHHHHHHHH-HHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          453 SVSARIGWLL-LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       453 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ...+..+..+ ...|+|++|+..|+..+..+     |+++....+++.+|.+|+..|++++|+..|++++..+     ++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            4556666654 66799999999999999843     4455567899999999999999999999999999854     36


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      ++...++++.+|.++..+|++++|...|+++++.++
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            777889999999999999999999999999987654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=0.00018  Score=62.30  Aligned_cols=250  Identities=14%  Similarity=0.063  Sum_probs=153.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 006812          215 NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR  294 (630)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  294 (630)
                      +-++..|+|..++..-++.-.       .  +........+...|..+|++..-+.-...         + ..+. ..+.
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~-------~--~~~~e~d~y~~raylAlg~~~~~~~eI~~---------~-~~~~-lqAv   75 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSS-------S--KTDVELDVYMYRAYLALGQYQIVISEIKE---------G-KATP-LQAV   75 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhcc-------c--cchhHHHHHHHHHHHHccccccccccccc---------c-cCCh-HHHH
Confidence            345567887777665544221       1  12234455677788888887654432211         1 1111 2223


Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 006812          295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFIS  374 (630)
Q Consensus       295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  374 (630)
                      ..++.....-++.++-+.-..+-+.  ...  ..........-|.+|...|++++|+........         ..+...
T Consensus        76 r~~a~~~~~e~~~~~~~~~l~E~~a--~~~--~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------lE~~Al  142 (299)
T KOG3081|consen   76 RLLAEYLELESNKKSILASLYELVA--DST--DGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------LEAAAL  142 (299)
T ss_pred             HHHHHHhhCcchhHHHHHHHHHHHH--hhc--cchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------HHHHHH
Confidence            3445555545554443332222111  111  112223444557889999999999998876322         113333


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      -..++.+..+++-|.+.+++..++.+.          .++..||..+..    .++..+|.-+|++.-       +...|
T Consensus       143 ~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~s-------~k~~~  205 (299)
T KOG3081|consen  143 NVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELS-------EKTPP  205 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHh-------cccCC
Confidence            346777888999999999888776532          234444444433    334666666666543       33455


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      ...+.+.++.+...+|+|++|...++.++.        ..+....++.++..+-...|...++.+-+-.-+.
T Consensus       206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  206 TPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             ChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            567889999999999999999999999998        4566677899999999999998887765544443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.60  E-value=4.6e-07  Score=69.17  Aligned_cols=96  Identities=29%  Similarity=0.386  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      ++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..++++++.+.        |
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            5678999999999999999999999873        23344678899999999999999999999998842        3


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ....++..+|.++...|++++|..++.++++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            33368899999999999999999999988764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.7e-06  Score=79.46  Aligned_cols=139  Identities=17%  Similarity=0.073  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc--------hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812          411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS--------EGSVSARIGWLLLLTGKVPQAIPYLESAAERL  482 (630)
Q Consensus       411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (630)
                      +.....-|..|++.|+|..|...|++++.........+..        ...++.|++.++.++++|.+|+....++++  
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--  285 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--  285 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--
Confidence            3445567889999999999999999999887644322211        134568899999999999999999999988  


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 006812          483 KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA-IEFQQR  561 (630)
Q Consensus       483 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~  561 (630)
                            ..|....+++.-|.++..+|+|+.|+..|++++++        .|....+...|..+-.+..++.+. .+.|.+
T Consensus       286 ------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  286 ------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             ------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  34666778889999999999999999999999884        355555666666665554443333 555555


Q ss_pred             HHHH
Q 006812          562 AIDA  565 (630)
Q Consensus       562 al~~  565 (630)
                      ++.-
T Consensus       352 mF~k  355 (397)
T KOG0543|consen  352 MFAK  355 (397)
T ss_pred             Hhhc
Confidence            5543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.57  E-value=1.5e-05  Score=83.96  Aligned_cols=209  Identities=14%  Similarity=0.092  Sum_probs=160.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK-ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  405 (630)
                      +|+....|......+...++.++|.+..++++....- .......+|..+-++...-|.-+.-.+.|++|-+.+      
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------ 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------ 1527 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc------
Confidence            5777778888888888999999999999999975521 222223344444444444455666678888887776      


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                         +-..++..|..+|...+++++|.++|+..++-+.+.       ..+|...|..++.+.+-++|...+.+|+....+ 
T Consensus      1528 ---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk- 1596 (1710)
T KOG1070|consen 1528 ---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT-------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK- 1596 (1710)
T ss_pred             ---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch-------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-
Confidence               333678889999999999999999999988865422       358899999999999999999999999985432 


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                           ..........|.+-++.|+.+.+...|+..+.        .+|...+.|.-....-.+.|+.+.+..+|++++..
T Consensus      1597 -----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1597 -----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             -----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence                 22345666788899999999999999998887        56777788888888889999999999999998743

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.56  E-value=9.4e-05  Score=78.21  Aligned_cols=210  Identities=16%  Similarity=0.080  Sum_probs=161.4

Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                      +|..+..|...-..+...++.++|.+.+++|+....-.. .......|..+-++...-|.-+.-.+.|+++.+....   
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~--- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA--- 1529 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch---
Confidence            444445555556677889999999999999988642111 1223333444444444446666777788887775422   


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ  446 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  446 (630)
                        ..+|..|..+|...+++++|.++++..++-+.        ....+|...|..++.+++-+.|...+.+|+.-.++   
T Consensus      1530 --~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk--- 1596 (1710)
T KOG1070|consen 1530 --YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK--- 1596 (1710)
T ss_pred             --HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch---
Confidence              34788999999999999999999999888774        34478999999999999999999999999987544   


Q ss_pred             CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                        +.........|.+-++.|+.+.+..+|+..+.        .+|...+.|.-+...-...|+.+.+...|++++.+
T Consensus      1597 --~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1597 --QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             --hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence              22345677889999999999999999999887        56777778888888889999999999999999885

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.56  E-value=5.8e-07  Score=63.17  Aligned_cols=64  Identities=23%  Similarity=0.277  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG-KFEEAINTLKGVVRQ  360 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~  360 (630)
                      +..+..+|.++...|++++|+.+|++++++      +|....++.++|.++..+| ++++|+..++++++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            345666677777777777777777777766      5666666677777777776 567777777666654

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.53  E-value=3.6e-05  Score=66.78  Aligned_cols=175  Identities=15%  Similarity=0.088  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN  286 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  286 (630)
                      +..++.-|......|+|++|+..|+......     +..|..-.+...++.++++.+++++|+...++-+...+     .
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-----~  103 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-----T  103 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----C
Confidence            4567788999999999999999999866322     44566678899999999999999999999999998877     5


Q ss_pred             CHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHHHHHHHHHHcCCH
Q 006812          287 SVEVAHDRRLLGVIYSGL-----EEHQKALEQNELSQKVLKTWGLSSELL--------------RAEIDAANMQIALGKF  347 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~la~~~~~~g~~  347 (630)
                      |++...+++..|.++...     .+...+...+...-.++....+++-..              .--..+|..|.+.|.+
T Consensus       104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~  183 (254)
T COG4105         104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY  183 (254)
T ss_pred             CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            777777788888877653     455566666666666666666653221              2223578999999999


Q ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812          348 EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL  392 (630)
Q Consensus       348 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  392 (630)
                      ..|+.-++.+++..+.. .....++..+..+|..+|-.++|...-
T Consensus       184 ~AA~nR~~~v~e~y~~t-~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         184 VAAINRFEEVLENYPDT-SAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             HHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            99999999999976543 333557888889999999999887653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=5.4e-06  Score=76.24  Aligned_cols=138  Identities=12%  Similarity=0.097  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH-------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV-------EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL  321 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  321 (630)
                      +.....-|..|++.|+|..|...|++++.......+.+..       ....++.|++.++.++++|.+|+.+.++++.+ 
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-  286 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-  286 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence            3445667999999999999999999999887643322221       23467889999999999999999999999887 


Q ss_pred             HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH-HHHHHHHH
Q 006812          322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA-KRCLEIAC  396 (630)
Q Consensus       322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~  396 (630)
                           .+.+..+++..|.++..+|+|+.|+..|+++++..+.+..    +...+..+..+..++.+. .+.|....
T Consensus       287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka----~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA----ARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 7889999999999999999999999999999998777644    444444444443333332 34444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.49  E-value=6.6e-07  Score=61.91  Aligned_cols=60  Identities=23%  Similarity=0.264  Sum_probs=55.2

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          499 NLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       499 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      .+|..+...|++++|+..|++++.        .+|+...++..+|.++..+|++++|+.+|++++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            578999999999999999999998        678899999999999999999999999999999764

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.47  E-value=3.6e-05  Score=66.30  Aligned_cols=238  Identities=11%  Similarity=0.085  Sum_probs=159.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      ++++|+..|++++++-.+.   ..|   -..++-.+..+++++|+|++-++.|.+.+...+.....+      ...    
T Consensus        42 ~p~~Al~sF~kVlelEgEK---geW---GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN------ySE----  105 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGEK---GEW---GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN------YSE----  105 (440)
T ss_pred             CHHHHHHHHHHHHhccccc---chh---HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc------ccH----
Confidence            8999999999999887442   222   345677889999999999999999999998877765544      001    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .+.+.+-..-....+.+--..+|+..++..+..  .+......+-..||.+|+..|+|.+-.+.+.+.-.-+..-.|.+.
T Consensus       106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD  183 (440)
T KOG1464|consen  106 KSINSILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD  183 (440)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence            111222222223344444455666666555443  333333455667999999999999998888887776665444433


Q ss_pred             H----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          288 V----EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       288 ~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                      .    ....+|..-...|..+.+-.+-...|++++.+-.....+.-.....-.=|.++.+.|+|++|-.-|-++.+....
T Consensus       184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE  263 (440)
T KOG1464|consen  184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE  263 (440)
T ss_pred             hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence            2    455566666778888888888888999998875554443323333344477888999999999999888876654


Q ss_pred             cc-h--HHHHHHHHHHHHHHhhc
Q 006812          364 ES-E--TRALVFISMGKALCNQE  383 (630)
Q Consensus       364 ~~-~--~~~~~~~~la~~~~~~~  383 (630)
                      .. +  ....-|..++..+.+.|
T Consensus       264 sGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  264 SGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             cCCcchhHHHHHHHHHHHHHHcC
Confidence            32 2  22444556666666544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.47  E-value=1.1e-06  Score=66.93  Aligned_cols=96  Identities=30%  Similarity=0.392  Sum_probs=79.9

Q ss_pred             HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE  238 (630)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  238 (630)
                      ++..+|.++...|++++|+..+++++...                +....++..+|.++...|++++|+.++++++.+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD----------------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC----------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            46779999999999999999999998871                11125677899999999999999999999886432


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812          239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI  278 (630)
Q Consensus       239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  278 (630)
                              ....++..+|.++...|++++|..++.++++.
T Consensus        66 --------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 --------DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             --------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence                    22367889999999999999999999988764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.46  E-value=2.8e-06  Score=76.66  Aligned_cols=103  Identities=17%  Similarity=0.044  Sum_probs=84.1

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812          208 AVHLELANVK-TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN  286 (630)
Q Consensus       208 ~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  286 (630)
                      ...+..+..+ ...|+|++|+..|++.++..     ++++....+++.+|.+|+..|++++|+..|++++..++     +
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-----~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-----K  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----C
Confidence            3445566654 56799999999999988665     45555678899999999999999999999999998766     5


Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                      ++....++..+|.++...|++++|...|++.++.
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6677788888999998899999999888876654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.45  E-value=4e-06  Score=67.44  Aligned_cols=119  Identities=13%  Similarity=0.039  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ....+..|.-++..|++++|..+|+-..-     +   ++.....+..||.++..+++|++|+..|..+..+..     +
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-----~  103 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCI-----Y---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-----N  103 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----h---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----C
Confidence            34567888889999999999999987665     2   244455788999999999999999999999987542     3


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHh
Q 006812          532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKA  591 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~  591 (630)
                      +|   ...+..|.||..+|+.+.|+..|+.++.     .+....-.++|..+++.+.+..
T Consensus       104 dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~-----~~~~~~l~~~A~~~L~~l~~~~  155 (165)
T PRK15331        104 DY---RPVFFTGQCQLLMRKAAKARQCFELVNE-----RTEDESLRAKALVYLEALKTAE  155 (165)
T ss_pred             CC---CccchHHHHHHHhCCHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHccc
Confidence            33   4678899999999999999999999987     3445555667777777665443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=1.2e-05  Score=66.74  Aligned_cols=228  Identities=13%  Similarity=0.033  Sum_probs=138.6

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      +.+.+..++..|..|-..| -..-|.--|.+++.+.          |..+.+++.+|..+...|+|+.|.+.|+..+++ 
T Consensus        61 ~eeRA~l~fERGvlYDSlG-L~~LAR~DftQaLai~----------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-  128 (297)
T COG4785          61 DEERAQLLFERGVLYDSLG-LRALARNDFSQALAIR----------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-  128 (297)
T ss_pred             hHHHHHHHHHhcchhhhhh-HHHHHhhhhhhhhhcC----------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-
Confidence            3455677888888888888 8888888899998876          345788899999999999999999999999988 


Q ss_pred             hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812          188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE  267 (630)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (630)
                                     +|..-.+..+.|..++.-|++.-|.+-+.+-.+.     ++++|-..- |..   +-...-+..+
T Consensus       129 ---------------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L-WLY---l~E~k~dP~~  184 (297)
T COG4785         129 ---------------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL-WLY---LNEQKLDPKQ  184 (297)
T ss_pred             ---------------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH-HHH---HHHhhCCHHH
Confidence                           4445566778899999999999998887764421     244442221 111   1122335666


Q ss_pred             HHHHHHH-HHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcC
Q 006812          268 ALPFGLK-ALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL-SSELLRAEIDAANMQIALG  345 (630)
Q Consensus       268 A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g  345 (630)
                      |...+.+ +...       +.....  + ++...|  .|+..+ ...++++..-...... ......+++.+|..|...|
T Consensus       185 A~tnL~qR~~~~-------d~e~WG--~-~iV~~y--LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G  251 (297)
T COG4785         185 AKTNLKQRAEKS-------DKEQWG--W-NIVEFY--LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG  251 (297)
T ss_pred             HHHHHHHHHHhc-------cHhhhh--H-HHHHHH--HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence            6544332 2221       111111  1 111222  222211 1122222221110000 1345678899999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812          346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK  384 (630)
Q Consensus       346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~  384 (630)
                      +.++|..+|+-++...--+-...-.++..++.+...+.+
T Consensus       252 ~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~  290 (297)
T COG4785         252 DLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDD  290 (297)
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccch
Confidence            999999999988863322222223344455554444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.42  E-value=1.3e-06  Score=60.34  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          457 RIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      .+|..+...|++++|+..|+++++        .+|....++..+|.++..+|++++|+.+|++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            578999999999999999999997        66889999999999999999999999999999985

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.42  E-value=0.00049  Score=63.70  Aligned_cols=254  Identities=15%  Similarity=0.035  Sum_probs=144.2

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH---cCCC-----hh
Q 006812          259 FVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE-EHQKALEQNELSQKVLKT---WGLS-----SE  329 (630)
Q Consensus       259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~---~~~~-----~~  329 (630)
                      ...+|+++.|..++.++-.......+......+..+++.|......+ +++.|..+++++.+++..   ....     ..
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999887753222233477888999999999999 999999999999999754   2111     23


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      ...++..++.+|...+.++...+ ...+++......+..+..+..--.+..+.++.+++.+.+.+.+.-..-..    ..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e----~~  157 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE----SN  157 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc----ch
Confidence            45677889999999888764433 33333333333222222333333334447888888888888766542110    01


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc--CChhhH--HHHHHHHHHHHHHh
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT--GKVPQA--IPYLESAAERLKES  485 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~~~~~~  485 (630)
                      ...+...+-. +. ......|...+...+...-.. ..++ .... .-+-.++...  ++....  ++.....++...+.
T Consensus       158 ~~~~l~~i~~-l~-~~~~~~a~~~ld~~l~~r~~~-~~~~-~~e~-~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~  232 (278)
T PF08631_consen  158 FDSILHHIKQ-LA-EKSPELAAFCLDYLLLNRFKS-SEDQ-WLEK-LVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS  232 (278)
T ss_pred             HHHHHHHHHH-HH-hhCcHHHHHHHHHHHHHHhCC-ChhH-HHHH-HHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH
Confidence            1111111111 11 233456666666655432111 1110 1111 1122222222  222233  44444444433333


Q ss_pred             cCCC-CccH----HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          486 FGPK-HFGV----GYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       486 ~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      .+.. .+..    ...+.+.|...++.++|++|+.+|+-++.
T Consensus       233 ~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  233 LGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            2222 2222    23455778899999999999999998764

It is also involved in sporulation [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.39  E-value=3.3e-06  Score=73.83  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 006812          455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD  534 (630)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  534 (630)
                      .++.|.-++..|+|..|...|..-++-     .|+.+....++++||.+++.+|+|++|...|..+..-+     +.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            688888899999999999999998884     36677888899999999999999999999999998843     35666


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          535 SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       535 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      ..++++.||.+...+|+.++|...|+++++-++.
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            6789999999999999999999999999876643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.38  E-value=0.0012  Score=61.13  Aligned_cols=252  Identities=15%  Similarity=0.138  Sum_probs=142.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhh--cCCCC----HHH
Q 006812          218 TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKKG--LGHNS----VEV  290 (630)
Q Consensus       218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~--~~~~~----~~~  290 (630)
                      ..+|+++.|..++.++-.+...........++..+++.|......+ +++.|..+++++.++....  ....+    ...
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            4689999999999998776643222333467889999999999999 9999999999999997541  11122    245


Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVL-KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                      ..++..++.+|...+.++...+.. .+++.+ ...++.+.....   --.+....++.+.+.+.+.+++....-......
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~-~~l~~l~~e~~~~~~~~~L---~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~  159 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKAL-NALRLLESEYGNKPEVFLL---KLEILLKSFDEEEYEEILMRMIRSVDHSESNFD  159 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHH-HHHHHHHHhCCCCcHHHHH---HHHHHhccCChhHHHHHHHHHHHhcccccchHH
Confidence            677889999999998876544422 223333 233433332222   222233378899999999998875542211111


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH-HHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHHHHHhC
Q 006812          370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE-VADAYSEISMQYESM--NEFETA--ISLLKRTLALLEKL  444 (630)
Q Consensus       370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~~~~~~  444 (630)
                      .+...+-. +. ......|...+...+...-...    ++ ..... .+..++...  ++....  ++.....++.....
T Consensus       160 ~~l~~i~~-l~-~~~~~~a~~~ld~~l~~r~~~~----~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~  232 (278)
T PF08631_consen  160 SILHHIKQ-LA-EKSPELAAFCLDYLLLNRFKSS----EDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS  232 (278)
T ss_pred             HHHHHHHH-HH-hhCcHHHHHHHHHHHHHHhCCC----hhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHHHHHH
Confidence            11111111 11 1233456666665543322111    12 22111 112222222  222222  33344444432222


Q ss_pred             CCC-CCchh-----HHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          445 PQA-QHSEG-----SVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       445 ~~~-~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      .+. -.+..     ..+.+.|.-.++.++|++|..+|+-++.
T Consensus       233 ~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  233 LGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            221 11221     2346778889999999999999997764

It is also involved in sporulation [].

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.38  E-value=0.00011  Score=63.46  Aligned_cols=239  Identities=15%  Similarity=0.062  Sum_probs=164.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 006812          220 MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGV  299 (630)
Q Consensus       220 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  299 (630)
                      ..+.++|+..|++++++-.    .....-..++..+..+++.+|+|++-.+.|.+.+...+.....+..+.  +.+.+-.
T Consensus        40 e~~p~~Al~sF~kVlelEg----EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlD  113 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEG----EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILD  113 (440)
T ss_pred             ccCHHHHHHHHHHHHhccc----ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHH
Confidence            3478999999999997652    233344678888999999999999999999999988776544443321  2223333


Q ss_pred             HHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--------chHHHHH
Q 006812          300 IYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--------SETRALV  371 (630)
Q Consensus       300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--------~~~~~~~  371 (630)
                      .-....+.+--..+|+..+..++...+......+...+|.+|+..++|.+-...+++.-..+...        ......+
T Consensus       114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi  193 (440)
T KOG1464|consen  114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI  193 (440)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence            33344555556677777777777766666666677789999999999998888888776655432        1223445


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812          372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE  451 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  451 (630)
                      |..-.++|..+.+-..-...|++++.+-...  +.+.-...+...-|..+.+.|+|++|-.-|-+|..-+.....+....
T Consensus       194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAI--PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt  271 (440)
T KOG1464|consen  194 YALEIQMYTEQKNNKKLKALYEQALHIKSAI--PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT  271 (440)
T ss_pred             HhhHhhhhhhhcccHHHHHHHHHHHHhhccC--CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence            5555678888888888888999988775433  23222333444557788999999999998888887665554333322


Q ss_pred             hHHHHHHHHHHHHcC
Q 006812          452 GSVSARIGWLLLLTG  466 (630)
Q Consensus       452 ~~~~~~la~~~~~~g  466 (630)
                      ..-|..|+..+.+.|
T Consensus       272 CLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  272 CLKYLVLANMLMKSG  286 (440)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            334567777777765

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=2.8e-05  Score=72.76  Aligned_cols=267  Identities=14%  Similarity=0.057  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS  328 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  328 (630)
                      ...+++.|.+|+....+..|++.....+...+..   .....+......-..+....+.++|+.++.-..++.......+
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~l---e~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~  176 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESL---ESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL  176 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            5677888999999999999998887776655432   1122233333445556666677777776654333322111110


Q ss_pred             h--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          329 E--LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       329 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      .  ...     +......+-...|..-+--+      +..  ..+...-...|....+..-+..-.+-++.+..      
T Consensus       177 ~gn~~~-----~nn~~kt~s~~aAe~s~~~a------~~k--~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~------  237 (696)
T KOG2471|consen  177 VGNHIP-----ANNLLKTLSPSAAERSFSTA------DLK--LELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ------  237 (696)
T ss_pred             cccccc-----hhhhcccCCcchhcccchhh------ccc--hhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC------
Confidence            0  000     01111112222221111100      000  01111122233333444444433333333321      


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch---hHHHHHHHHHHHHcCChhhHHHHHHHHHH-HH
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE---GSVSARIGWLLLLTGKVPQAIPYLESAAE-RL  482 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~  482 (630)
                        +.+.++...+..++..|++.+|.+.+... .+.+...+...|.   ...++++|.++++.|.|.-+..+|.+|++ ..
T Consensus       238 --~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  238 --DSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             --CCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence              33456677788899999999999887653 2323322222222   23458999999999999999999999996 33


Q ss_pred             HHhcCC---------CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812          483 KESFGP---------KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS  548 (630)
Q Consensus       483 ~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  548 (630)
                      .+.-..         .......++++.|..|...|++-.|.++|.+++..+..     +|   ..|..||.+...
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nP---rlWLRlAEcCim  381 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NP---RLWLRLAECCIM  381 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----Cc---HHHHHHHHHHHH
Confidence            332111         11234567899999999999999999999999998753     34   678888888643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.36  E-value=1.2e-05  Score=76.59  Aligned_cols=120  Identities=18%  Similarity=0.200  Sum_probs=100.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHH
Q 006812          417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYI  496 (630)
Q Consensus       417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  496 (630)
                      +-.++...++++.|+.++++..+.        .|.  +...++.++...++..+|+..+.+++.        ..|.....
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~L  236 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER--------DPE--VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSEL  236 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc--------CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHHH
Confidence            344556678899999998886552        232  556789999999999999999999996        45666888


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812          497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       497 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  562 (630)
                      +...+..+...++++.|+...++++.        ..|....+|+.|+.+|...|++++|+..+..+
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~--------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVE--------LSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH--------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            89999999999999999999999999        45888899999999999999999999766543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.32  E-value=0.0025  Score=58.47  Aligned_cols=299  Identities=14%  Similarity=0.046  Sum_probs=193.6

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCC
Q 006812          118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGG  197 (630)
Q Consensus       118 ~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  197 (630)
                      .|.+....| |-..|...-.++-++...    +.    .+.....-++.-.-.|+++.|.+-|+-.+..           
T Consensus        90 tGliAagAG-da~lARkmt~~~~~llss----Dq----epLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----------  149 (531)
T COG3898          90 TGLIAAGAG-DASLARKMTARASKLLSS----DQ----EPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----------  149 (531)
T ss_pred             hhhhhhccC-chHHHHHHHHHHHhhhhc----cc----hHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----------
Confidence            343333444 888898888887766533    21    1223334566777889999999999877653           


Q ss_pred             CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006812          198 SVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALE  277 (630)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  277 (630)
                           .......+..|-.--...|..+.|..+-+.+-...+.        ...+....-...+..|+++.|+++.+....
T Consensus       150 -----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~--------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         150 -----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ--------LPWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             -----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC--------CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence                 1111112222333345789999999999988755432        344555555667889999999999987665


Q ss_pred             HHhhhcCCCCH--HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          278 IHKKGLGHNSV--EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLK  355 (630)
Q Consensus       278 ~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  355 (630)
                      ...  .+++..  ..+..+..-+.... ..+...|...-.++.++      .|+.+..-..-+..++..|+..++-.+++
T Consensus       217 ~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE  287 (531)
T COG3898         217 AKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILE  287 (531)
T ss_pred             HHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHH
Confidence            332  122222  22222222222222 23567777776666665      67777777778899999999999999999


Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          356 GVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK  435 (630)
Q Consensus       356 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  435 (630)
                      .+.+..+  ++..       +..|....--+.++.-++++..+..-     .++........+..-..-|++..|..--+
T Consensus       288 ~aWK~eP--HP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~aAlda~e~~~ARa~Ae  353 (531)
T COG3898         288 TAWKAEP--HPDI-------ALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEAALDAGEFSAARAKAE  353 (531)
T ss_pred             HHHhcCC--ChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHhccchHHHHHHHH
Confidence            8887432  3332       33344333334455555555444321     14566777888888899999999988777


Q ss_pred             HHHHHHHhCCCCCCchhHHHHHHHHHHHHc-CChhhHHHHHHHHHH
Q 006812          436 RTLALLEKLPQAQHSEGSVSARIGWLLLLT-GKVPQAIPYLESAAE  480 (630)
Q Consensus       436 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  480 (630)
                      .+..+        .|...++..|+.+-... |+-.++..++-+++.
T Consensus       354 aa~r~--------~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         354 AAARE--------APRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHhhh--------CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            77664        33445788888887765 999999999999886

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.32  E-value=0.0021  Score=64.16  Aligned_cols=180  Identities=14%  Similarity=0.038  Sum_probs=121.6

Q ss_pred             HHhccccHHHHHHHHHHHHHHHHHcCCC-hhH---HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812          300 IYSGLEEHQKALEQNELSQKVLKTWGLS-SEL---LRAEIDAANMQI----ALGKFEEAINTLKGVVRQTEKESETRALV  371 (630)
Q Consensus       300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~---~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~~  371 (630)
                      +.--.||-+.++..+.++.+-   .+.. +-.   ...|+.....+.    .....+.|.+++......+|+.    +..
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~---~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s----~lf  269 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKS---ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS----ALF  269 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhcc---CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc----HHH
Confidence            333468999999988876541   1111 111   111112111122    2345677777777777765543    557


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812          372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE  451 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  451 (630)
                      +...|+++...|+.++|++.+++++.......    .-...++..++.++..+++|++|..++.+..+.      .....
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSk  339 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSK  339 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHH
Confidence            77889999999999999999998875332221    233467889999999999999999999988773      22233


Q ss_pred             hHHHHHHHHHHHHcCCh-------hhHHHHHHHHHHHHHHhcCCCCccHHHH
Q 006812          452 GSVSARIGWLLLLTGKV-------PQAIPYLESAAERLKESFGPKHFGVGYI  496 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~  496 (630)
                      +...+..|.++...|+.       ++|.+++.++-....+..|...|...-+
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv  391 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFV  391 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHH
Confidence            44558889999999999       8888888888887777666555544333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.32  E-value=0.0027  Score=63.41  Aligned_cols=176  Identities=14%  Similarity=0.087  Sum_probs=123.9

Q ss_pred             HcCCHHHHHHHHHHHHHHhhhcchHH---HHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          343 ALGKFEEAINTLKGVVRQTEKESETR---ALVFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       343 ~~g~~~~A~~~~~~~l~~~~~~~~~~---~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      -.|+-+.++..+.++.+...-..+.-   ...|+.....+..    ..+.+.|.+.+......+        |..+..+.
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--------P~s~lfl~  271 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--------PNSALFLF  271 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--------CCcHHHHH
Confidence            56888999999998876322222221   1122222222222    345566777777666554        56667888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHH
Q 006812          416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY  495 (630)
Q Consensus       416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  495 (630)
                      ..|+++...|+.++|++.|++++........   .....++.+++++..+++|++|..++.+..+.       +....+.
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q---l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~WSka~  341 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQ---LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SKWSKAF  341 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHh---HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cccHHHH
Confidence            8999999999999999999998853322211   12346789999999999999999999988872       3344555


Q ss_pred             HHHHHHHHHHHcCCh-------hHHHHHHHHHHHHHHHhcCCCCHHHH
Q 006812          496 IYNNLGAAYLELDRP-------QSAAQVFAFAKDIMDVSLGPHHADSI  536 (630)
Q Consensus       496 ~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~  536 (630)
                      ..+..|.++...|+.       ++|.++|.++-.+..+..+...|...
T Consensus       342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~  389 (468)
T PF10300_consen  342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEK  389 (468)
T ss_pred             HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHH
Confidence            667889999999999       89999999998888776665555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.30  E-value=1.8e-05  Score=59.86  Aligned_cols=100  Identities=16%  Similarity=0.038  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 006812          455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD  534 (630)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  534 (630)
                      +..-|......|+.+.|++.|.+++.+.        |..+.+|++.+..+.-+|+.++|++-+++++++.    |+....
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trt  113 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRT  113 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchH
Confidence            3455778888999999999999999853        6667799999999999999999999999999975    444455


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          535 SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       535 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      ...++...|.+|..+|+-+.|..-|+.|.++.
T Consensus       114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            56889999999999999999999999997653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.30  E-value=3.3e-05  Score=58.40  Aligned_cols=102  Identities=18%  Similarity=0.116  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV  371 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~  371 (630)
                      ..+..-|......|+.+.|++.|.+++.+      -|....+|++.+..+.-+|+.++|++-++++++..+........+
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa  117 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCL------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA  117 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHh------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence            33445677888899999999999999998      577889999999999999999999999999999988777777889


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812          372 FISMGKALCNQEKFADAKRCLEIACGIL  399 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~  399 (630)
                      +...|.+|..+|+-+.|..-|+.+.++.
T Consensus       118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  118 FVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            9999999999999999999999887664

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.28  E-value=0.00026  Score=61.63  Aligned_cols=176  Identities=15%  Similarity=0.169  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812          331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV  410 (630)
Q Consensus       331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  410 (630)
                      +..+.+-|...+..|++++|+..|+.+....+-.+- ...+...++.++.+.+++++|+...++.+....     .+|+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-----~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-----THPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----CCCCh
Confidence            445555666666777777777777776654443322 255777777777778888888877777766653     33566


Q ss_pred             HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCCCC-chhH------------HHHHHHHHHHHcCChhhHH
Q 006812          411 ADAYSEISMQYESM-----NEFETAISLLKRTLALLEKLPQAQH-SEGS------------VSARIGWLLLLTGKVPQAI  472 (630)
Q Consensus       411 ~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~-~~~~------------~~~~la~~~~~~g~~~~A~  472 (630)
                      ..+++..|.++...     .+...+...+...-++..+.+.... +++.            --..+|..|.+.|.+..|+
T Consensus       108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~  187 (254)
T COG4105         108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI  187 (254)
T ss_pred             hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            66666666665542     2333333333333333333332221 1111            1135788999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHH
Q 006812          473 PYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF  517 (630)
Q Consensus       473 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  517 (630)
                      ..++.+++-+     ++.+....++..+..+|..+|-.++|...-
T Consensus       188 nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         188 NRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             HHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9999999854     345667788999999999999999986643

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=0.001  Score=58.16  Aligned_cols=227  Identities=13%  Similarity=0.070  Sum_probs=149.1

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 006812          254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRA  333 (630)
Q Consensus       254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  333 (630)
                      .++.-....+++++|+..|.+.+.-.-........+.-.+...++.+|...|++..--+......+.+..+... ....+
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~Ki   86 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITKI   86 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHHH
Confidence            45666677889999999998887541110000111334556789999999999988777777666665554433 22222


Q ss_pred             HHHH-HHHHHHcCCHHHHHHHHHHHHHHhhhcchH--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812          334 EIDA-ANMQIALGKFEEAINTLKGVVRQTEKESET--RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV  410 (630)
Q Consensus       334 ~~~l-a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  410 (630)
                      ...+ -.+-.....++.-+..+...++...+....  ....-..+..++++.|+|.+|+......+.-+++..  +.+..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~L  164 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINL  164 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cccce
Confidence            2222 222334566777788888877766544322  123345678889999999999999888777766554  33556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812          411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK  483 (630)
Q Consensus       411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  483 (630)
                      ..++..-..+|....+..++...+..|........-+....+..-..-|...+...+|.-|..+|-++++-+.
T Consensus       165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft  237 (421)
T COG5159         165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT  237 (421)
T ss_pred             eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence            6667777888888888888888888777766555432222222223446667778899999999999988543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.27  E-value=1.1e-05  Score=70.56  Aligned_cols=107  Identities=17%  Similarity=0.031  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHH
Q 006812          252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELL  331 (630)
Q Consensus       252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  331 (630)
                      .++.|.-++..|+|..|..-|..-++-++     +......++++||.+++.+|+++.|...|..+.+   ..+..+...
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-----~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KAp  215 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-----NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAP  215 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCCh
Confidence            45556667788999999999999888666     5667788999999999999999999999986544   667778888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          332 RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       332 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                      .+++.+|.+...+|+.++|...++++++.++....
T Consensus       216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            99999999999999999999999999998877644

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.27  E-value=0.00027  Score=57.47  Aligned_cols=136  Identities=11%  Similarity=0.067  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      .-.+.||......|++.+|...|++++.      |..-.+...+..++...+..+++..|...+++..+.-     + ..
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qals------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-----p-a~  157 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALS------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-----P-AF  157 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhc------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-----C-cc
Confidence            4456789999999999999999999987      5555556788999999999999999999999887732     1 11


Q ss_pred             cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      ........+|.++..+|++.+|...|+.++...        |.. ......+..+.++|+.++|..-+....+...+
T Consensus       158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r  225 (251)
T COG4700         158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PGP-QARIYYAEMLAKQGRLREANAQYVAVVDTAKR  225 (251)
T ss_pred             CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            223355678999999999999999999999854        222 35555688899999999998877776655544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.25  E-value=3.4e-05  Score=63.25  Aligned_cols=106  Identities=22%  Similarity=0.136  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812          111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL  190 (630)
Q Consensus       111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  190 (630)
                      .+..+-.-|.-++..| +|++|..-|..||.+.+..     .......+|.+.|.+..+++.++.|+..+.+++.+    
T Consensus        94 kad~lK~EGN~~F~ng-dyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----  163 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNG-DYEEANSKYQEALESCPST-----STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----  163 (271)
T ss_pred             HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----
Confidence            4456677888899998 9999999999999999665     23457889999999999999999999999999998    


Q ss_pred             hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE  238 (630)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  238 (630)
                                  .|.+..++...+.+|.++..|++|+.-|.+.++..+
T Consensus       164 ------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  164 ------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             ------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence                        556667788899999999999999999999886543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.22  E-value=0.0044  Score=56.76  Aligned_cols=229  Identities=25%  Similarity=0.269  Sum_probs=164.1

Q ss_pred             hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 006812          262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQ  341 (630)
Q Consensus       262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  341 (630)
                      .+.+..+...+...+......      .........+..+...+++..+...+......    ...+.....+...+..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  105 (291)
T COG0457          36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL  105 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence            345555666555555432210      12355667788888899999998888877653    22456677888889999


Q ss_pred             HHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH-HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812          342 IALGKFEEAINTLKGVVRQTEKESETRALVFISMGK-ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ  420 (630)
Q Consensus       342 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  420 (630)
                      ...+++..++..+..++........    .....+. ++...|+++.|...+.+++.....     .......+...+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  176 (291)
T COG0457         106 EALGKYEEALELLEKALALDPDPDL----AEALLALGALYELGDYEEALELYEKALELDPE-----LNELAEALLALGAL  176 (291)
T ss_pred             HHHhhHHHHHHHHHHHHcCCCCcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ccchHHHHHHhhhH
Confidence            9999999999999998875544311    2233333 888999999999999998552110     01344556666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 006812          421 YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL  500 (630)
Q Consensus       421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  500 (630)
                      +...++++.|+..+.+++......      ....+..++..+...+++++|...+..++...        +.....+..+
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~  242 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNL  242 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhH
Confidence            888999999999999998863331      23467889999999999999999999998842        3244466677


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHH
Q 006812          501 GAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       501 ~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      +..+...+.++++...+.+++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         243 ALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            77777778899999999998884

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.19  E-value=0.005  Score=56.61  Aligned_cols=298  Identities=14%  Similarity=0.058  Sum_probs=200.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 006812          213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH  292 (630)
Q Consensus       213 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  292 (630)
                      -|.+-.-.|+-..|.+.-.++-.+..    .+.+-+  +...-++.-.-.|+++.|.+-|+-++..        ......
T Consensus        90 tGliAagAGda~lARkmt~~~~~lls----sDqepL--IhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PEtRll  155 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLS----SDQEPL--IHLLEAQAALLEGDYEDARKKFEAMLDD--------PETRLL  155 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhh----ccchHH--HHHHHHHHHHhcCchHHHHHHHHHHhcC--------hHHHHH
Confidence            45666677888888887777654432    333322  2333466677789999999999987742        111122


Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcchHH--
Q 006812          293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQT--EKESETR--  368 (630)
Q Consensus       293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~--  368 (630)
                      -+..|-.--...|..+.|+.|-+.+...      .|....+....-...+..|+|+.|+++.+......  .++....  
T Consensus       156 GLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r  229 (531)
T COG3898         156 GLRGLYLEAQRLGAREAARHYAERAAEK------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR  229 (531)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH
Confidence            2223333345689999999999887775      45556666666677889999999999998765432  2222111  


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                      +..+..-+.... .-+...|...-.++.++.        |+..-.-..-+..++..|+..++-.+++.+-+      ...
T Consensus       230 AvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~--------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK------~eP  294 (531)
T COG3898         230 AVLLTAKAMSLL-DADPASARDDALEANKLA--------PDLVPAAVVAARALFRDGNLRKGSKILETAWK------AEP  294 (531)
T ss_pred             HHHHHHHHHHHh-cCChHHHHHHHHHHhhcC--------CccchHHHHHHHHHHhccchhhhhhHHHHHHh------cCC
Confidence            222222222222 234556666666666654        45556666778899999999999999998877      345


Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                      ||.      ++.+|....--+.++.-++++-.+.     .-.|+..+.....+..-+.-|++..|..--+.+..+.    
T Consensus       295 HP~------ia~lY~~ar~gdta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~----  359 (531)
T COG3898         295 HPD------IALLYVRARSGDTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA----  359 (531)
T ss_pred             ChH------HHHHHHHhcCCCcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC----
Confidence            554      4455666555567777777776643     2346677788889999999999999988888776632    


Q ss_pred             CCCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 006812          529 GPHHADSIEACQNLSKAYSSM-GSYTLAIEFQQRAIDA  565 (630)
Q Consensus       529 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  565 (630)
                          |. ..++..|+.+-... |+-.++..++-++++.
T Consensus       360 ----pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         360 ----PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             ----ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence                22 24778889888766 9999999999999864

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.19  E-value=5.4e-05  Score=75.82  Aligned_cols=130  Identities=15%  Similarity=0.074  Sum_probs=96.5

Q ss_pred             HHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHhh
Q 006812          294 RRLLGVIYSGL---EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK--------FEEAINTLKGVVRQTE  362 (630)
Q Consensus       294 ~~~la~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~l~~~~  362 (630)
                      ++..|.-+...   ++..+|+.+|++|+++      +|+...++..++.+|.....        ...+.....+++....
T Consensus       342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~  415 (517)
T PRK10153        342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE  415 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence            44455555444   3478999999999998      88888888888877765432        2333344444333211


Q ss_pred             hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          363 KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       363 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                        .+..+.++..+|..+...|++++|...+++|+.+.        +. ..+|..+|.++...|++++|++.|++|+.+
T Consensus       416 --~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        416 --LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             --CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence              12224578888888889999999999999999875        33 578999999999999999999999999987

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.18  E-value=5.1e-05  Score=75.99  Aligned_cols=133  Identities=17%  Similarity=0.127  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHH
Q 006812          369 ALVFISMGKALCNQ---EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEF--------ETAISLLKRT  437 (630)
Q Consensus       369 ~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~a  437 (630)
                      +..++..|.-+...   ++...|+.+|++++++.        |+.+.++..++.+|.....+        ..+....+++
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            33444445555443   34778999999999876        67777777777776554322        2333333333


Q ss_pred             HHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHH
Q 006812          438 LALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF  517 (630)
Q Consensus       438 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  517 (630)
                      +.+     ........++..+|..+...|++++|...+++|+++        .|. ..+|..+|.++...|++++|++.|
T Consensus       411 ~al-----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        411 VAL-----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             hhc-----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            322     112223457788888888999999999999999983        243 578999999999999999999999


Q ss_pred             HHHHHH
Q 006812          518 AFAKDI  523 (630)
Q Consensus       518 ~~al~~  523 (630)
                      ++|+.+
T Consensus       477 ~~A~~L  482 (517)
T PRK10153        477 STAFNL  482 (517)
T ss_pred             HHHHhc
Confidence            999885

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=0.00011  Score=65.28  Aligned_cols=112  Identities=16%  Similarity=0.051  Sum_probs=90.9

Q ss_pred             cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHH
Q 006812          243 EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL---EEHQKALEQNELSQK  319 (630)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~  319 (630)
                      ..+|..+.-|..||.+|...|++..|...|.+++++..     ++++.   +..+|.+++.+   ....++...+++++.
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-----~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~  221 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-----DNPEI---LLGLAEALYYQAGQQMTAKARALLRQALA  221 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-----CCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence            34566688899999999999999999999999999765     34444   33445555443   345678888888888


Q ss_pred             HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812          320 VLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR  368 (630)
Q Consensus       320 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  368 (630)
                      .      ++..+.+...+|..++..|+|.+|...++..++..+.+.+..
T Consensus       222 ~------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         222 L------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             c------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence            6      888999999999999999999999999999999888776643

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.0086  Score=61.99  Aligned_cols=58  Identities=19%  Similarity=0.204  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI  278 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  278 (630)
                      .+|..+|.+....|...+|++.|-++          ++|   ..|...-.+..+.|.|++-+.++.-+-+.
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            45666777777777777777776653          222   33555556666677777776666655443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=4.9e-05  Score=67.55  Aligned_cols=104  Identities=17%  Similarity=0.065  Sum_probs=87.0

Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHH
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD---RPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~  525 (630)
                      +.++.-|..||.+|..+|++..|...|.+++++.        |+....+..+|.++..+.   ...++...+++++.   
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---  221 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---  221 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---
Confidence            3456789999999999999999999999999952        444557777888877664   46789999999998   


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       526 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                           .+|....++..||..++..|+|.+|...++..++....
T Consensus       222 -----~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         222 -----LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             -----cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence                 56777789999999999999999999999999876433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.12  E-value=0.0042  Score=56.88  Aligned_cols=209  Identities=23%  Similarity=0.255  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      ........+..+...+.+..+...+...+..  .........+...+..+...+++..+...+..+.......       
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  128 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-------  128 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-------
Confidence            3566778888999999999999999888764  2233335578888888889999999999888877654221       


Q ss_pred             HHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812          410 VADAYSEISM-QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP  488 (630)
Q Consensus       410 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (630)
                       .......+. ++...|++++|...+.+++.....    ...........+..+...+++++|+..+.+++...      
T Consensus       129 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------  197 (291)
T COG0457         129 -DLAEALLALGALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEEALELLEKALKLN------  197 (291)
T ss_pred             -chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC------
Confidence             122233333 889999999999999999552110    01223455666666888999999999999999843      


Q ss_pred             CCcc-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          489 KHFG-VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       489 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                        +. ....+..++..+...++++.|...+..++...        +.....+..++..+...|+++++...+.+++....
T Consensus       198 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         198 --PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             --cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence              33 45678899999999999999999999998853        32345677777777777889999999999887654


Q ss_pred             H
Q 006812          568 S  568 (630)
Q Consensus       568 ~  568 (630)
                      .
T Consensus       268 ~  268 (291)
T COG0457         268 D  268 (291)
T ss_pred             c
Confidence            3

>PRK15331 chaperone protein SicA; Provisional

Probab=98.12  E-value=3.5e-05  Score=62.17  Aligned_cols=103  Identities=11%  Similarity=0.032  Sum_probs=81.2

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC
Q 006812          325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET  404 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  404 (630)
                      |.+++.....+..|.-++..|++++|..+|+-.......+    ...+..||.++..+++|++|+..|..+..+....  
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--  104 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--  104 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--
Confidence            4556677778888888899999999999998776643333    3478899999999999999999998887765322  


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                            ....+..|.+|...|+.+.|...|+.++.
T Consensus       105 ------p~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        105 ------YRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ------CCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                  13457789999999999999999988877

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.09  E-value=6.6e-06  Score=57.54  Aligned_cols=67  Identities=24%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006812          462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQN  541 (630)
Q Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  541 (630)
                      +...|++++|+..|++++.        .+|....++..+|.+|...|++++|...+++++.        .+|+....+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--------~~~~~~~~~~l   64 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ--------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--------QDPDNPEYQQL   64 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH--------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--------GGTTHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCcCHHHHHHH
Confidence            3578999999999999998        3577778899999999999999999999999987        34544444444


Q ss_pred             HHH
Q 006812          542 LSK  544 (630)
Q Consensus       542 la~  544 (630)
                      ++.
T Consensus        65 ~a~   67 (68)
T PF14559_consen   65 LAQ   67 (68)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            443

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.08  E-value=8.8e-05  Score=70.78  Aligned_cols=118  Identities=16%  Similarity=0.176  Sum_probs=97.5

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812          298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK  377 (630)
Q Consensus       298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~  377 (630)
                      -.++...++++.|+..+++..+.      .|.   +...++.++...++..+|+..+.+++...+.+    +..+...+.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~  242 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRER------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAE  242 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhc------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Confidence            44555667899999888864442      233   45568999999999999999999999755544    557888899


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR  436 (630)
Q Consensus       378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  436 (630)
                      .+...++++.|+...+++..+.        |.....|..|+.+|...|++++|+..++.
T Consensus       243 fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            9999999999999999999887        77889999999999999999999977663

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.08  E-value=1.4e-05  Score=75.50  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ..|.....++++|.+|..+|+|++|+..|++++++.     +++++...+++++|.+|..+|++++|++.+++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467888999999999999999999999999999953     333333356999999999999999999999999986

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=6.1e-05  Score=61.83  Aligned_cols=106  Identities=15%  Similarity=0.094  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      ..+..-|.-++..|+|++|..-|..|+++++..   .......+|.+.|.+..+++.++.|+.-..+++++      .|.
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pt  166 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPT  166 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------Cch
Confidence            334455888999999999999999999998864   23466778889999999999999999999999988      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE  364 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  364 (630)
                      ...++...|.+|....+|++|++-|+++++..+..
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence            88888899999999999999999999999876554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.08  E-value=6.4e-05  Score=59.24  Aligned_cols=122  Identities=19%  Similarity=0.083  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ...++.-|.-.+..|+|++|++.|+.....+     +..+....+...||.+|+..|++++|+..+++.+++.     |.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence            3567888999999999999999999877632     3345556788899999999999999999999999864     67


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhcC
Q 006812          532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASG  593 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  593 (630)
                      ||...-+++..|.++..+..     ..+....     ..+..+....+|..-|+++..+..+
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~-----~~~~~~~-----~~drD~~~~~~A~~~f~~lv~~yP~  131 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDE-----GSLQSFF-----RSDRDPTPARQAFRDFEQLVRRYPN  131 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhh-----hHHhhhc-----ccccCcHHHHHHHHHHHHHHHHCcC
Confidence            88888899999988887765     1111111     1122345566666666666665443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.05  E-value=1e-05  Score=50.06  Aligned_cols=41  Identities=34%  Similarity=0.455  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 006812          494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD  534 (630)
Q Consensus       494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  534 (630)
                      +.++.+||.+|..+|++++|..++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999985

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.0071  Score=53.11  Aligned_cols=224  Identities=14%  Similarity=0.070  Sum_probs=150.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH----HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          212 ELANVKTAMGRREEALEHLQKCLEI----KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       212 ~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .++.-..+.+++++|+..|.+.+.-    .++.    ..+.-.+...++.+|...|++..--+.....-+...+.   ..
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk   80 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TK   80 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cc
Confidence            4667777888999999999887743    1111    11234567889999999999988777666665555543   23


Q ss_pred             HHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--
Q 006812          288 VEVAHDRRLLGVIY-SGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--  364 (630)
Q Consensus       288 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--  364 (630)
                      +....+...|..-+ .....++.-+...+..++...+-.........-..+..+++..|.|.+|+......+...++.  
T Consensus        81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD  160 (421)
T COG5159          81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD  160 (421)
T ss_pred             hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence            33344333333332 345567777777777777655433333334445667889999999999999999888766653  


Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812          365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV-ADAYSEISMQYESMNEFETAISLLKRTLALLEK  443 (630)
Q Consensus       365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  443 (630)
                      .+....++..-..+|....+..++...+..|........  .||.. +..-..-|.+++...+|.-|..+|-++++-+..
T Consensus       161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y--CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~  238 (421)
T COG5159         161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY--CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL  238 (421)
T ss_pred             ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC--CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence            334455666677888888899888888877766554443  33332 233333466777888999999999999885544


Q ss_pred             C
Q 006812          444 L  444 (630)
Q Consensus       444 ~  444 (630)
                      .
T Consensus       239 l  239 (421)
T COG5159         239 L  239 (421)
T ss_pred             c
Confidence            3

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.03  E-value=0.0017  Score=53.08  Aligned_cols=157  Identities=17%  Similarity=0.150  Sum_probs=114.9

Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812          260 VAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN  339 (630)
Q Consensus       260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  339 (630)
                      .+.=+.+....-..+.+++.+.         ..-...||......|++.+|..+|++++.     |.--+....+..++.
T Consensus        67 ~q~ldP~R~~Rea~~~~~~ApT---------vqnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~  132 (251)
T COG4700          67 QQKLDPERHLREATEELAIAPT---------VQNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQ  132 (251)
T ss_pred             HHhcChhHHHHHHHHHHhhchh---------HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHH
Confidence            3333455554444444443332         23356789999999999999999998876     444566778889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 006812          340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM  419 (630)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  419 (630)
                      ..+..+++..|...+++..+..+...  .+.....+|..+..+|++.+|+..|+.++.....         .......+.
T Consensus       133 Aqfa~~~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg---------~~ar~~Y~e  201 (251)
T COG4700         133 AQFAIQEFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG---------PQARIYYAE  201 (251)
T ss_pred             HHHhhccHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC---------HHHHHHHHH
Confidence            99999999999999999887543211  1336677899999999999999999999887621         134455678


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHH
Q 006812          420 QYESMNEFETAISLLKRTLALL  441 (630)
Q Consensus       420 ~~~~~g~~~~A~~~~~~al~~~  441 (630)
                      .+.++|+.++|..-+....+..
T Consensus       202 ~La~qgr~~ea~aq~~~v~d~~  223 (251)
T COG4700         202 MLAKQGRLREANAQYVAVVDTA  223 (251)
T ss_pred             HHHHhcchhHHHHHHHHHHHHH
Confidence            8899999999887776665543

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.0095  Score=53.74  Aligned_cols=295  Identities=12%  Similarity=0.088  Sum_probs=180.7

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV----EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      ..+......+++++++..+...+.-...  ....+    ..-.....+|..+...|+.++-....+.....+...+... 
T Consensus         9 e~~~~~~~~~~~~~~~~il~~vl~~~~~--~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-   85 (411)
T KOG1463|consen    9 ERAQNLVSVNQVEEAINILKSVLNKAQG--ASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-   85 (411)
T ss_pred             HHHHHhcccchhhhhHHHHHHHhhhhcc--ccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH-
Confidence            3344445556677888887777664221  11111    2234566889999999999988877776666655544332 


Q ss_pred             HHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhhcchHH--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          330 LLRAEIDAANM-QIALGKFEEAINTLKGVVRQTEKESETR--ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       330 ~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      .......+-.. ....+..+.-+.++..+++.........  -..-..+..+|...++|.+|+......+.-.++..  +
T Consensus        86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD--D  163 (411)
T KOG1463|consen   86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD--D  163 (411)
T ss_pred             HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--c
Confidence            22222222222 2334456677788888887765543321  23445678999999999999999888877776654  3


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                      .+....++..-...|....+..+|...+..|.......+-+....+.+=..-|.++....+|.-|..+|-+|++-+... 
T Consensus       164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~-  242 (411)
T KOG1463|consen  164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL-  242 (411)
T ss_pred             ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc-
Confidence            3345556666677888889999998888887776555543222223333455777777899999999999999866543 


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 006812          487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM--GSYTLAIEFQQR  561 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~  561 (630)
                       .++.....++..+-.+-...+..++-...+.-=..+.  .   ..+ ..+++..++..+.+.  .+|+.|+.-|+.
T Consensus       243 -~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g~-~i~AmkavAeA~~nRSLkdF~~AL~~yk~  312 (411)
T KOG1463|consen  243 -DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AGR-DIDAMKAVAEAFGNRSLKDFEKALADYKK  312 (411)
T ss_pred             -CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cCc-chHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence             2334444555555555566677766555443222221  1   122 235677777777543  344444444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.02  E-value=0.019  Score=57.00  Aligned_cols=62  Identities=11%  Similarity=0.069  Sum_probs=35.5

Q ss_pred             HHHHHhhHHHhhccChHHHHHHHHHH-----HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          158 MCLQVMGSANYSFKRFSDSLGYLSKA-----NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQK  232 (630)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (630)
                      ..|..++......-.++-|...|-+.     +++.+++..-.             .--...+.+-..-|+|++|.+.|..
T Consensus       693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~-------------s~~~q~aei~~~~g~feeaek~yld  759 (1189)
T KOG2041|consen  693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH-------------SKEQQRAEISAFYGEFEEAEKLYLD  759 (1189)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh-------------hHHHHhHhHhhhhcchhHhhhhhhc
Confidence            45566777777777777777777654     22222221111             0112345555666888888887754

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.02  E-value=0.0015  Score=48.74  Aligned_cols=124  Identities=19%  Similarity=0.197  Sum_probs=88.7

Q ss_pred             HHHHHHHHHH--HHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCC--hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          111 LGLVGLKIAL--KLDQEGGDPEMTLSFANRALNVLDKDERNNRPS--LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       111 ~~~~~~~~g~--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      .+.+|+.++.  -....| .|++|...+++|+.+...+......+  -..+.|+..|+..+..+|+|++++...++++..
T Consensus         6 Va~aY~aLs~ae~ql~~g-~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDG-AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3455555544  344455 99999999999999988772222211  246778999999999999999999999999998


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      +.+-+.-.     .|....+..+-++.+..+...|+.++|+..|+.+-++....
T Consensus        85 FNRRGEL~-----qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   85 FNRRGELH-----QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHHH--TT-----STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             Hhhccccc-----cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            87764432     23344555667789999999999999999999998887654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.00  E-value=0.00011  Score=58.02  Aligned_cols=122  Identities=18%  Similarity=0.149  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      ..++.-|......|+|++|++.|+....-.     +..+....+...||.+|+..|++++|+..+++-+++.+     .|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP-----~h   80 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP-----TH   80 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CC
Confidence            556789999999999999999998865433     44455568889999999999999999999999999876     67


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE  364 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  364 (630)
                      +.+..+++..|.++..+..  .++.   .   +.                 ..-...+...+|...|++.+...++.
T Consensus        81 p~vdYa~Y~~gL~~~~~~~--~~~~---~---~~-----------------~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   81 PNVDYAYYMRGLSYYEQDE--GSLQ---S---FF-----------------RSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             CCccHHHHHHHHHHHHHhh--hHHh---h---hc-----------------ccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            7788888888888876543  1111   0   00                 11112334557888888888887765

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.011  Score=53.37  Aligned_cols=300  Identities=13%  Similarity=0.056  Sum_probs=181.7

Q ss_pred             hhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Q 006812          163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE  242 (630)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  242 (630)
                      .+.......++++++..+.+.+...+...      +.+......-.+...+|..+...|++++-.......-......  
T Consensus        10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~------s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v--   81 (411)
T KOG1463|consen   10 RAQNLVSVNQVEEAINILKSVLNKAQGAS------SDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV--   81 (411)
T ss_pred             HHHHhcccchhhhhHHHHHHHhhhhcccc------CCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh--
Confidence            44444555667777777777666421111      1111122233556689999999999988766666544444332  


Q ss_pred             cchHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812          243 EDSRELGVANRDLAEAFVA-VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL  321 (630)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  321 (630)
                       ..+..+.....+-..+.. -+....-+..+..+++...+..  ........-..+..+|...++|.+|+......++-+
T Consensus        82 -~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rEl  158 (411)
T KOG1463|consen   82 -SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLREL  158 (411)
T ss_pred             -hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence             112233344444433332 3445566777777777655410  111122233467889999999999999999999999


Q ss_pred             HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--cch-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812          322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK--ESE-TRALVFISMGKALCNQEKFADAKRCLEIACGI  398 (630)
Q Consensus       322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  398 (630)
                      +++.+.+..+.++..-...|....+..+|...+..+-.....  -+| ..+..-..-|.++....+|.-|..||-+|.+-
T Consensus       159 KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg  238 (411)
T KOG1463|consen  159 KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG  238 (411)
T ss_pred             HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence            999888888888888889999999999988887766543322  122 22334444577777889999999999998877


Q ss_pred             HHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH--cCChhhHHHHHH
Q 006812          399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL--TGKVPQAIPYLE  476 (630)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~  476 (630)
                      +....  +++....++..+-.+-...+..++--..+..=..+ + .   ..+...+...++..+.+  +.+|+.|+.-|.
T Consensus       239 f~s~~--~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l-~-y---~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk  311 (411)
T KOG1463|consen  239 FDSLD--DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL-K-Y---AGRDIDAMKAVAEAFGNRSLKDFEKALADYK  311 (411)
T ss_pred             ccccC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH-h-c---cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence            65443  22344444444444445566666654444322222 1 1   12345566777777654  345566666555


Q ss_pred             HHHH
Q 006812          477 SAAE  480 (630)
Q Consensus       477 ~al~  480 (630)
                      .-+.
T Consensus       312 ~eL~  315 (411)
T KOG1463|consen  312 KELA  315 (411)
T ss_pred             HHHh
Confidence            4443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.99  E-value=3.3e-05  Score=73.00  Aligned_cols=74  Identities=19%  Similarity=0.094  Sum_probs=64.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812          200 EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI  278 (630)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  278 (630)
                      ....|.....++++|.+|...|+|++|+..|++++++.     ++++....+++++|.+|..+|++++|+.++++++++
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567778899999999999999999999999999765     444444467999999999999999999999999986

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.0031  Score=54.60  Aligned_cols=141  Identities=14%  Similarity=0.093  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS  328 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  328 (630)
                      ..+.+.+..++.-.|.|.-....+.+.++.       +++........||.+..+.|+.+.|..+|+...+....+..-.
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q  249 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ  249 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc
Confidence            356777788888889999999999888873       2333345566789999999999999999998777666666556


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812          329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD  400 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  400 (630)
                      ....+..+.+.+|.-.+++.+|...+.+++...+.+    +.+.++.|.|....|+..+|++.++.++.+..
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~----~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN----AVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhccccCCCc----hhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            677788889999999999999999998888754443    44777888899999999999999998877653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.0019  Score=55.86  Aligned_cols=186  Identities=13%  Similarity=0.073  Sum_probs=131.3

Q ss_pred             hHHHhhccChHHHHHHHHHHHHHHhHhhhcC----C-CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          164 GSANYSFKRFSDSLGYLSKANRMLGRLEEEG----L-GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE  238 (630)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  238 (630)
                      +.+....|+..+.+.-+.......+++....    . .....+.......+.+.+..++.-.|.|.-.+..+.+.++   
T Consensus       129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~---  205 (366)
T KOG2796|consen  129 AELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK---  205 (366)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH---
Confidence            4555566777766655544444333322111    0 0011112223345567788888899999999999988775   


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 006812          239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQ  318 (630)
Q Consensus       239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  318 (630)
                          .+.+........||.+..+.|+.+.|..+|+..-+......+  -.....+..+.+.+|...+++..|...+.+.+
T Consensus       206 ----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~  279 (366)
T KOG2796|consen  206 ----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL  279 (366)
T ss_pred             ----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence                233344566788999999999999999999977655544321  22334567788999999999999999888776


Q ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812          319 KVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE  364 (630)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  364 (630)
                      ..      ++..+.+.++.|.+....|+..+|++..+.++.+.+..
T Consensus       280 ~~------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  280 RM------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             cc------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            65      67778888899999999999999999999999887664

>PRK11906 transcriptional regulator; Provisional

Probab=97.93  E-value=0.00026  Score=67.30  Aligned_cols=162  Identities=14%  Similarity=0.005  Sum_probs=114.4

Q ss_pred             HHHHHHHhccc---cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhh
Q 006812          295 RLLGVIYSGLE---EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL---------GKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       295 ~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~  362 (630)
                      +..|......+   ..+.|+.+|.+|+..   ...+|+.+.++..++.+++..         ....+|.+..++++++.+
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~---~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~  335 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNK---SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT  335 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhc---ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence            34454443333   455677777777621   122688888888888887754         234567777788887655


Q ss_pred             hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          363 KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE  442 (630)
Q Consensus       363 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  442 (630)
                      .+    +.++..+|.+....++++.|...|++|+.+.        |+.+.+++..|.+....|+.++|.+.+++++++  
T Consensus       336 ~D----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--  401 (458)
T PRK11906        336 VD----GKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--  401 (458)
T ss_pred             CC----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--
Confidence            55    5588999999999999999999999999886        788999999999999999999999999999986  


Q ss_pred             hCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          443 KLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                         .+....+.+.......|+. ...++|+.+|-+
T Consensus       402 ---sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  432 (458)
T PRK11906        402 ---EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK  432 (458)
T ss_pred             ---CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence               2221112222222224544 446778877654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.89  E-value=5.1e-05  Score=53.88  Aligned_cols=59  Identities=17%  Similarity=0.140  Sum_probs=52.6

Q ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                      |..+|...+++++|++++++++.+        +|.....+...|.++..+|++++|...++++++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            356899999999999999999983        46677789999999999999999999999999853

>PRK11906 transcriptional regulator; Provisional

Probab=97.89  E-value=0.00077  Score=64.20  Aligned_cols=148  Identities=12%  Similarity=0.105  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM---------NEFETAISLLKRTLALLEKLPQAQHSEGSVS  455 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  455 (630)
                      .+.|..+|.+++....     ..|+.+.+|..++.++...         ....+|....++|+++       ++.++.++
T Consensus       274 ~~~Al~lf~ra~~~~~-----ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-------d~~Da~a~  341 (458)
T PRK11906        274 IYRAMTIFDRLQNKSD-----IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-------TTVDGKIL  341 (458)
T ss_pred             HHHHHHHHHHHhhccc-----CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-------CCCCHHHH
Confidence            4556667777762221     1257777787787777653         2344566666677664       33456688


Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                      ..+|.+....++++.|...|++|+.        -+|+.+.+++..|.+....|+.++|.+.+++++++        +|..
T Consensus       342 ~~~g~~~~~~~~~~~a~~~f~rA~~--------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--------sP~~  405 (458)
T PRK11906        342 AIMGLITGLSGQAKVSHILFEQAKI--------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--------EPRR  405 (458)
T ss_pred             HHHHHHHHhhcchhhHHHHHHHHhh--------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------Cchh
Confidence            9999999999999999999999998        45888899999999999999999999999999984        3443


Q ss_pred             HH-HHHHHHH-HHHhcCCHHHHHHHHHH
Q 006812          536 IE-ACQNLSK-AYSSMGSYTLAIEFQQR  561 (630)
Q Consensus       536 ~~-~~~~la~-~~~~~g~~~~A~~~~~~  561 (630)
                      .. ....+-. .|+.. ..++|+.+|-+
T Consensus       406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        406 RKAVVIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             hHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence            32 2222322 45544 46777776644

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.049  Score=56.81  Aligned_cols=154  Identities=16%  Similarity=0.139  Sum_probs=78.2

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-------------
Q 006812          254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV-------------  320 (630)
Q Consensus       254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------------  320 (630)
                      ..|.-++..|.|+.|.-+|...-                -+..|+.....+|+|..|.+..++|-..             
T Consensus      1199 ~vGdrcf~~~~y~aAkl~y~~vS----------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVS----------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred             HHhHHHhhhhhhHHHHHHHHHhh----------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence            34555555566665555543321                1334455555566666666655544221             


Q ss_pred             -----HHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          321 -----LKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       321 -----~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                           .+-.|.+ .-.+.-+-.+...|...|-+++-+.+++.++..-..+    ...+..+|.+|.+- ++++-.++++-
T Consensus      1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH----MgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH----MGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred             hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH----HHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence                 1112222 1223344466778888999999999988887643322    23566677666543 33443333332


Q ss_pred             HH---HHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 006812          395 AC---GILDKKETISPEEVADAYSEISMQYESMNEFETAI  431 (630)
Q Consensus       395 a~---~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  431 (630)
                      ..   .+-+-.   ...+.+..|..+..+|.+-..|+.|.
T Consensus      1338 FwsRvNipKvi---RA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1338 FWSRVNIPKVI---RAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHHhcchHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            21   111000   00133455666666666666665543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.02  Score=51.69  Aligned_cols=164  Identities=11%  Similarity=-0.057  Sum_probs=121.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812          214 ANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD  293 (630)
Q Consensus       214 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  293 (630)
                      +.+....|++.+|....++.+        .+.|....++..--.+++..|+...-...+++.+....    ++-|-...+
T Consensus       110 aai~~~~g~~h~a~~~wdklL--------~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn----~dlp~~sYv  177 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLL--------DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN----ADLPCYSYV  177 (491)
T ss_pred             HHHhhccccccHHHHHHHHHH--------HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC----CCCcHHHHH
Confidence            344566788888888888877        44454455566666788888998888888887665422    245555666


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812          294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI  373 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~  373 (630)
                      ...++......|-|++|.+..++++++      ++....+...++.++...|++.++.+...+.-.......-....-|-
T Consensus       178 ~GmyaFgL~E~g~y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW  251 (491)
T KOG2610|consen  178 HGMYAFGLEECGIYDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW  251 (491)
T ss_pred             HHHHHhhHHHhccchhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence            667788888999999999988888887      67778888899999999999999999888765444332222334455


Q ss_pred             HHHHHHHhhccHHHHHHHHHHH
Q 006812          374 SMGKALCNQEKFADAKRCLEIA  395 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a  395 (630)
                      ..+.++...+.|+.|++.|+.-
T Consensus       252 H~Al~~iE~aeye~aleIyD~e  273 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDRE  273 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHH
Confidence            6677888889999999988764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.82  E-value=8.5e-05  Score=51.83  Aligned_cols=52  Identities=25%  Similarity=0.294  Sum_probs=44.0

Q ss_pred             hhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          168 YSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      +..|++++|+..|++++..                .|....+++.+|.+|...|++++|...+++++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR----------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH----------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hhccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5689999999999999988                334456777899999999999999999999773

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.81  E-value=7.3e-05  Score=53.07  Aligned_cols=59  Identities=24%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      |..+|...+++++|+.++++++.+        +|+....+...|.++..+|++++|...++++++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            357889999999999999999994        57777899999999999999999999999999653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.80  E-value=4.2e-05  Score=47.17  Aligned_cols=40  Identities=25%  Similarity=0.301  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG  492 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (630)
                      .++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            4779999999999999999999999999999999999884

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.77  E-value=0.00044  Score=60.31  Aligned_cols=119  Identities=13%  Similarity=0.065  Sum_probs=89.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC-----CHHHHHHH
Q 006812          465 TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH-----HADSIEAC  539 (630)
Q Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~  539 (630)
                      ...+++|++.|.-|+-...- .+..+...+..+..+|++|...|+.+....++++|++.+.+.+...     ..+...++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            34678899999888865443 3445567788999999999999998888888888888887766432     23445788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812          540 QNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ  586 (630)
Q Consensus       540 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~  586 (630)
                      +.+|.++.+.|++++|..+|.+++.......  .+.-.+.|+..++.
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~--~~~l~~~AR~~w~~  213 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK--EPKLKDMARDQWQL  213 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHHh
Confidence            9999999999999999999999986433322  23445666665543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.74  E-value=0.0047  Score=46.17  Aligned_cols=123  Identities=19%  Similarity=0.106  Sum_probs=88.5

Q ss_pred             HHHHHHHhhHH--HhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSA--NYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       156 ~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      ++.+|..|+..  .+.-|-|++|...+.+|+++.+.+....    ..|..---+.++-.|+..+..+|+|++++....++
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eE----aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a   81 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEE----AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA   81 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHh----hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            45555555544  4567889999999999999988775544    44555555677888999999999999999999999


Q ss_pred             HHHHHHHh---ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          234 LEIKELIL---EEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       234 l~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                      |..+.+.-   .........+.++.+..+...|+.++|+..|+.+-++...-
T Consensus        82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            98876541   11112345566778999999999999999999998876643

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.69  E-value=0.00022  Score=63.87  Aligned_cols=97  Identities=15%  Similarity=0.102  Sum_probs=83.3

Q ss_pred             HHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 006812          160 LQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL  239 (630)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  239 (630)
                      +-..|+-|+++|+|++|+.+|.+++.+                .|.....+.+.+.+|.++..|..|..-+..|+.+.+.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~----------------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAV----------------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhcc----------------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            355789999999999999999999987                3333456678899999999999999999999977654


Q ss_pred             HhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          240 ILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                      .        ..+|...|.+-...|...+|.+-++.+|++-+
T Consensus       164 Y--------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP  196 (536)
T KOG4648|consen  164 Y--------VKAYSRRMQARESLGNNMEAKKDCETVLALEP  196 (536)
T ss_pred             H--------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence            3        68899999999999999999999999998755

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.68  E-value=0.00013  Score=65.21  Aligned_cols=95  Identities=18%  Similarity=0.027  Sum_probs=82.5

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                      -..|.-|+++|+|++|+.+|.+++.        -.|.....+.+.+.+|+++..|..|..-...|+.+.        ..+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia--------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y  164 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIA--------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLY  164 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhc--------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHH
Confidence            3457889999999999999999998        345556678899999999999999999999999853        456


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      ..+|...+.+-..+|+..+|.+-++.++++-
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            6899999999999999999999999998763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.68  E-value=0.092  Score=54.18  Aligned_cols=229  Identities=17%  Similarity=0.049  Sum_probs=133.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 006812          219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLG  298 (630)
Q Consensus       219 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  298 (630)
                      ..+++.+|+....+.+        ..+|....+...-|....++|+.++|..+++. +....    .+   .-.++..+-
T Consensus        21 d~~qfkkal~~~~kll--------kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~----~~---D~~tLq~l~   84 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLL--------KKHPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGLK----GT---DDLTLQFLQ   84 (932)
T ss_pred             hhHHHHHHHHHHHHHH--------HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccCC----CC---chHHHHHHH
Confidence            4567777877777765        44565566666778889999999999966543 32211    12   234566778


Q ss_pred             HHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Q 006812          299 VIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKA  378 (630)
Q Consensus       299 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~  378 (630)
                      .+|..+|++++|..+|+++...      .|. -..+..+-.+|.+.+.|.+-.+.--+..+..++.+-   ..|..+..+
T Consensus        85 ~~y~d~~~~d~~~~~Ye~~~~~------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y---yfWsV~Sli  154 (932)
T KOG2053|consen   85 NVYRDLGKLDEAVHLYERANQK------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY---YFWSVISLI  154 (932)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhh------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc---hHHHHHHHH
Confidence            9999999999999999988775      454 555666667777777776544444444444444432   244444444


Q ss_pred             HHhhccHHHHHH-----HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812          379 LCNQEKFADAKR-----CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS  453 (630)
Q Consensus       379 ~~~~~~~~~A~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  453 (630)
                      .......++...     +-++..+..-...|.. ...++.. ..-.++..+|++++|.+.+..-+.  ......   ...
T Consensus       155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~-~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l~~~---~~~  227 (932)
T KOG2053|consen  155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKI-ESEAEII-LYLLILELQGKYQEALEFLAITLA--EKLTSA---NLY  227 (932)
T ss_pred             HHhccCCcccccchhHHHHHHHHHHHhccCCcc-chHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhcccc---chH
Confidence            444444433332     1111111111111211 1122222 223456678999999998854333  222111   112


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      .-+.....+...++|.+-.++..+.+.
T Consensus       228 l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  228 LENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            224556677788888888887777776

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.66  E-value=0.055  Score=51.19  Aligned_cols=204  Identities=11%  Similarity=0.093  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES---MNEFETAISLLKRTLALLEKLP  445 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~  445 (630)
                      +.+..++-..|....+|+.-++..+..-.+-...    .+....+....|.++.+   .|+.++|+..+..++.      
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~----~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~------  210 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD----VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE------  210 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc----hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh------
Confidence            4456677777899999998888877654441111    12333455667777888   8999999999988755      


Q ss_pred             CCCCchhHHHHHHHHHHHHc---------CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH
Q 006812          446 QAQHSEGSVSARIGWLLLLT---------GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV  516 (630)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  516 (630)
                      ....+...++..+|.+|...         ...++|+.+|.++.++.        ++. ..-.|++.++...|...+...-
T Consensus       211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~~-Y~GIN~AtLL~~~g~~~~~~~e  281 (374)
T PF13281_consen  211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PDY-YSGINAATLLMLAGHDFETSEE  281 (374)
T ss_pred             ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------ccc-cchHHHHHHHHHcCCcccchHH
Confidence            23334456888888887542         23566777777776632        211 1224667777777765444433


Q ss_pred             HHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhc
Q 006812          517 FAFAKDIMDVSLGP----HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKAS  592 (630)
Q Consensus       517 ~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  592 (630)
                      .++........++.    ........+..++.+..-.|++++|.+.++++++....  .-..+..-+-+.++.+......
T Consensus       282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~--~W~l~St~~ni~Li~~~~~~~~  359 (374)
T PF13281_consen  282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP--AWELESTLENIKLIRHFRKRPE  359 (374)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc--chhHHHHHHHHHHHHHHhcCCC
Confidence            33333111111111    11222235567788888999999999999999866211  1123344455566655554433


Q ss_pred             C
Q 006812          593 G  593 (630)
Q Consensus       593 ~  593 (630)
                      .
T Consensus       360 ~  360 (374)
T PF13281_consen  360 E  360 (374)
T ss_pred             C
Confidence            3

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.0005  Score=58.44  Aligned_cols=98  Identities=18%  Similarity=0.108  Sum_probs=87.3

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                      ..-|..++...+|..|+..|.+++.        .+|..+..+.+-+.++++..+++.+..-.+++++        -.|+.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~--------~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--------l~~N~   77 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAIC--------INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--------LDPNL   77 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHh--------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--------cChHH
Confidence            4456677778889999999999998        4577778889999999999999999999999999        45888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      +...+.+|.+......+++|+..+++|....+..
T Consensus        78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            8999999999999999999999999999988873

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.60  E-value=0.0047  Score=52.34  Aligned_cols=113  Identities=13%  Similarity=0.065  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc
Q 006812          245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW  324 (630)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  324 (630)
                      ...+..++..+|..|...|++++|++.|.++.+...     ........+.++..+....+++.....+..++..+....
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~  106 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG  106 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence            356678899999999999999999999999877543     334566777888889999999999999999999988775


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812          325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  362 (630)
                      ++..........-|..+...++|.+|...|-.+...+.
T Consensus       107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            55433344445556667778889888888877765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.58  E-value=0.086  Score=51.15  Aligned_cols=104  Identities=8%  Similarity=-0.129  Sum_probs=67.1

Q ss_pred             hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      |....+|+.|..-+..+ .+++..+.|++.+..                .|....+|...........+|+.-+.+|.++
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~----------------FP~s~r~W~~yi~~El~skdfe~VEkLF~RC   79 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV----------------FPSSPRAWKLYIERELASKDFESVEKLFSRC   79 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc----------------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            45677888787777666 899999999988776                3334455666677777888999999999998


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                      |.-.-.      .++-  -..|..+-...|+...+....-+|.++....
T Consensus        80 LvkvLn------lDLW--~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k  120 (656)
T KOG1914|consen   80 LVKVLN------LDLW--KLYLSYVRETKGKLFGYREKMVQAYDFALEK  120 (656)
T ss_pred             HHHHhh------HhHH--HHHHHHHHHHccCcchHHHHHHHHHHHHHHH
Confidence            843211      1111  1223344445566666666656665554443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.58  E-value=0.054  Score=55.67  Aligned_cols=281  Identities=17%  Similarity=0.102  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812          223 REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV-----LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL  297 (630)
Q Consensus       223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  297 (630)
                      ...|..+++.+-+..          ...+...+|.+|..-     .+.+.|+.+++.+..-..+..   +.....+.+.+
T Consensus       228 ~~~a~~~~~~~a~~g----------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~l  294 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG----------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGL  294 (552)
T ss_pred             hhHHHHHHHHHHhhc----------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHH
Confidence            456777777654321          245666777777654     689999999999987311110   00122356678


Q ss_pred             HHHHhccc-----cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcchHHH
Q 006812          298 GVIYSGLE-----EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG---KFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       298 a~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                      |.+|....     +++.|+.+|.++-..        ....+...+|.++..-.   ++..|..+|..+.....      .
T Consensus       295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~------~  360 (552)
T KOG1550|consen  295 GRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH------I  360 (552)
T ss_pred             HHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC------h
Confidence            88888743     678899999887664        34566778888887665   57899999998876321      3


Q ss_pred             HHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Q 006812          370 LVFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM-NEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       370 ~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~  444 (630)
                      .+.+.++.+|..    .-+...|..++.++.+..          ...+...++.++... +.++.+.-.+....+.--+.
T Consensus       361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g----------~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~  430 (552)
T KOG1550|consen  361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG----------NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV  430 (552)
T ss_pred             HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc----------ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH
Confidence            377777777765    356788999998886653          112333344433322 66666666555544431111


Q ss_pred             CCCCCchhHHHHHHHHHHHHc----CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----CChhHHHHH
Q 006812          445 PQAQHSEGSVSARIGWLLLLT----GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL----DRPQSAAQV  516 (630)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~  516 (630)
                      .   ......+..........    .+...+...+.++..          .....+...||.+|..-    .+++.|...
T Consensus       431 ~---q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~  497 (552)
T KOG1550|consen  431 A---QSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGRDPEKAAAQ  497 (552)
T ss_pred             H---hhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCCChHHHHHH
Confidence            0   00011111111111111    134455555555544          23344677888888764    358899999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006812          517 FAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM---GSYTLAIEFQQRAID  564 (630)
Q Consensus       517 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~  564 (630)
                      |..+..-        .   ....+++|.++..-   .....|..+|.++.+
T Consensus       498 y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  498 YARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             HHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence            9998762        2   67889999998653   125777777777754

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00065  Score=57.78  Aligned_cols=102  Identities=19%  Similarity=0.224  Sum_probs=87.9

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      +.-+..-|..++...+|..|+..|.+++.+                .|..+..+.+.+.+|.+..+++.+..-..+++++
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql   73 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL   73 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhc----------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc
Confidence            334456788888999999999999999998                4555677889999999999999999999999965


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                      .        |+.+...+.+|.+......|++|+..++++..+....
T Consensus        74 ~--------~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   74 D--------PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             C--------hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            5        5558899999999999999999999999999888764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.53  E-value=0.0014  Score=57.20  Aligned_cols=101  Identities=17%  Similarity=0.202  Sum_probs=79.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC-----ccHHHHH
Q 006812          423 SMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH-----FGVGYIY  497 (630)
Q Consensus       423 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~  497 (630)
                      ....+++|++.|.-|+-...-........+.++..+|++|...|+.+....++++|++.+.+.+....     .+...++
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            34568888888888887765553333334677899999999999998888899999988887754432     2446688


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          498 NNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       498 ~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      +.+|.+..+.|++++|..+|.+.+..
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            89999999999999999999999874

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.52  E-value=0.066  Score=55.09  Aligned_cols=281  Identities=19%  Similarity=0.135  Sum_probs=169.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhccchHH
Q 006812          173 FSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM-----GRREEALEHLQKCLEIKELILEEDSRE  247 (630)
Q Consensus       173 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~  247 (630)
                      ..+|..+++.+-+.                  ........+|.+|..-     .+.+.|+.+|+.+..-.++..   +..
T Consensus       228 ~~~a~~~~~~~a~~------------------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~  286 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL------------------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKG  286 (552)
T ss_pred             hhHHHHHHHHHHhh------------------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhc
Confidence            45677777776655                  1123445667766544     688999999999876321110   011


Q ss_pred             HHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHH
Q 006812          248 LGVANRDLAEAFVAVL-----NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE---EHQKALEQNELSQK  319 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~  319 (630)
                      ...+.+.+|.+|....     ++..|..+|.++-..       .+   ..+.+.+|.+|....   ++..|.++|..|..
T Consensus       287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence            2346788999998854     677799998888764       22   245667788887665   67899999988766


Q ss_pred             HHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Q 006812          320 VLKTWGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-EKFADAKRCLEI  394 (630)
Q Consensus       320 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~  394 (630)
                      .        ....+...++.+|..    ..+...|..+++++.+....      .+...++..+... ++++.+.-.+..
T Consensus       357 ~--------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~------~A~~~~~~~~~~g~~~~~~~~~~~~~  422 (552)
T KOG1550|consen  357 A--------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP------SAAYLLGAFYEYGVGRYDTALALYLY  422 (552)
T ss_pred             c--------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh------hhHHHHHHHHHHccccccHHHHHHHH
Confidence            3        346677788888764    35789999999998875411      1333333333222 666666554444


Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc----C
Q 006812          395 ACGILDKKETISPEEVADAYSEISMQYESM----NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT----G  466 (630)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g  466 (630)
                      ......+..    ...+..+..........    .+...+...+.++...         ....+...+|.+|..-    .
T Consensus       423 ~a~~g~~~~----q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---------g~~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  423 LAELGYEVA----QSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ---------GNADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             HHHhhhhHH----hhHHHHHHHhccccccccccccchhHHHHHHHHHHhc---------cCHHHHhhhcceeeecCCCCC
Confidence            333321110    11111111111111111    1344555555554331         1234667888888764    4


Q ss_pred             ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CChhHHHHHHHHHHH
Q 006812          467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL---DRPQSAAQVFAFAKD  522 (630)
Q Consensus       467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~  522 (630)
                      +++.|...|.++...        .   +....++|.++..-   .....|.++|.++..
T Consensus       490 d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  490 DPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             ChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence            588999999988762        1   66888999988653   125778888887766

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.49  E-value=0.12  Score=50.43  Aligned_cols=131  Identities=18%  Similarity=0.146  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH-HHHHhc
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE-RLKESF  486 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~  486 (630)
                      ...+..+..++.+..+.|+++.|...+.++........   .....+....+.++...|+..+|+..++..+. ......
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~---~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~  219 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE---SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI  219 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc---CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            35566777777777888888877777776655321110   00223556667777777888888777777666 222110


Q ss_pred             -------------------------CCCCccHHHHHHHHHHHHHHc------CChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          487 -------------------------GPKHFGVGYIYNNLGAAYLEL------DRPQSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       487 -------------------------~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                                               .......+.++..+|......      +..+++...|.++..+        +|..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~  291 (352)
T PF02259_consen  220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSW  291 (352)
T ss_pred             ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhH
Confidence                                     011234456677777777777      8888899999999884        4566


Q ss_pred             HHHHHHHHHHHHhc
Q 006812          536 IEACQNLSKAYSSM  549 (630)
Q Consensus       536 ~~~~~~la~~~~~~  549 (630)
                      ..++..+|..+...
T Consensus       292 ~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  292 EKAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHHH
Confidence            67888888776544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.49  E-value=0.042  Score=52.90  Aligned_cols=125  Identities=21%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc-CCC---------
Q 006812          258 AFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW-GLS---------  327 (630)
Q Consensus       258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~---------  327 (630)
                      -..+..+..+-++...+|+++.+        +.+.+|..|+.-  ......+|.++++++++..+.. +..         
T Consensus       177 ~AWRERnp~aRIkaA~eALei~p--------dCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~  246 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEINP--------DCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF  246 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhh--------hhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence            33456677778888888888754        334555444421  2334677888888877764431 110         


Q ss_pred             ---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          328 ---------SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       328 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                               .....+...+|.+..++|+.++|++.++..++..+..  +...+..+|..++...+.|.++...+.+
T Consensus       247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~--~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL--DNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc--chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                     1113334455666666666666666666655543321  1233555555666666666665555544

The molecular function of this protein is uncertain.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.003  Score=54.07  Aligned_cols=116  Identities=20%  Similarity=0.130  Sum_probs=95.3

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccc---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDI---KPIMHAVHLELANVKTAMGRREEALEHLQK  232 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (630)
                      ...++..-|+-++..|+|.+|...|..|+...+.+.-.. .|..++.   .......+.+.+.|+...|+|-++++....
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkE-kP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKE-KPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhcc-CCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            445778899999999999999999999999988876655 3444432   333446678899999999999999999888


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          233 CLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                      .+        ..+|....+|+..|.+....=+.++|..-|.+++++.+
T Consensus       256 iL--------~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  256 IL--------RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             HH--------hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence            77        45566689999999999999999999999999998644

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.39  E-value=0.022  Score=54.72  Aligned_cols=162  Identities=19%  Similarity=0.167  Sum_probs=107.5

Q ss_pred             hhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC-----------
Q 006812          381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH-----------  449 (630)
Q Consensus       381 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------  449 (630)
                      +..+...-++...+|+++.        |+.+.+|..|+.-  ......+|..+|+++++..+...+...           
T Consensus       180 RERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            3445666677777787776        5667777766642  234467888888888877655443211           


Q ss_pred             -------chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          450 -------SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       450 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                             +...+-..+|.+..+.|+.++|++.++..++..      ...+...+..+|..++...+.|.++...+.+.-+
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence                   112334689999999999999999999988632      1223566889999999999999999998887533


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHh-cCC---------------HHHHHHHHHHHHHH
Q 006812          523 IMDVSLGPHHADSIEACQNLSKAYSS-MGS---------------YTLAIEFQQRAIDA  565 (630)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~  565 (630)
                      +       .-|..+..++.-|.+-.+ .|+               -..|.+...+|++.
T Consensus       324 i-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef  375 (539)
T PF04184_consen  324 I-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF  375 (539)
T ss_pred             c-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence            2       234555555555544322 222               13466777777764

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.38  E-value=0.073  Score=50.40  Aligned_cols=178  Identities=13%  Similarity=0.072  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812          331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN---QEKFADAKRCLEIACGILDKKETISP  407 (630)
Q Consensus       331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~  407 (630)
                      ..+..++-..|....+|+.-+.+.+..-..-..+......+....|.++.+   .|+.++|+..+..++...   .+   
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~---~~---  214 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD---EN---  214 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---CC---
Confidence            445567777899999999998888876554222222234456677777877   899999999988864432   21   


Q ss_pred             HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHH
Q 006812          408 EEVADAYSEISMQYESM---------NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESA  478 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  478 (630)
                       ..+.++..+|.+|...         ...++|+..|.++.++.        ++...-.|++.++...|...+...-.++.
T Consensus       215 -~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~~Y~GIN~AtLL~~~g~~~~~~~el~~i  285 (374)
T PF13281_consen  215 -PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PDYYSGINAATLLMLAGHDFETSEELRKI  285 (374)
T ss_pred             -CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------ccccchHHHHHHHHHcCCcccchHHHHHH
Confidence             2335777778777542         23667777777777652        22223367777777777655554444443


Q ss_pred             HHHHHHhcCC----CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          479 AERLKESFGP----KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       479 l~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      .-.....+|.    ......+.+..++.+..-.|++++|...++++..+
T Consensus       286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            3222221211    12233445567788888899999999999999875

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.37  E-value=0.011  Score=48.76  Aligned_cols=111  Identities=22%  Similarity=0.207  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCC----CC--------ChhHHHHHHHhhHHHhhccChHHHHHHHHHH
Q 006812          116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNN----RP--------SLLVAMCLQVMGSANYSFKRFSDSLGYLSKA  183 (630)
Q Consensus       116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (630)
                      ...|......+ +.+.++..+++++.++...+-.+    .|        ......++..++..+...|++++|+..++++
T Consensus        10 ~~~a~~~~~~~-~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen   10 VREARAAARAG-DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHTT--HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34455555566 88888888888888774322111    11        0123346677888899999999999999999


Q ss_pred             HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Q 006812          184 NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEE  243 (630)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  243 (630)
                      +.+                .|..-..+..+..+|...|+..+|+..|++......+-+|-
T Consensus        89 l~~----------------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~  132 (146)
T PF03704_consen   89 LAL----------------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI  132 (146)
T ss_dssp             HHH----------------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred             Hhc----------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence            998                44555678889999999999999999999998887765543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.37  E-value=0.00065  Score=39.83  Aligned_cols=32  Identities=31%  Similarity=0.498  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          538 ACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       538 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      ++.+||.+|...|++++|+++|++++.+....
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            47899999999999999999999999776553

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.025  Score=47.06  Aligned_cols=104  Identities=15%  Similarity=0.130  Sum_probs=80.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      ...-..+...++..+...|++++|+..++.++.... +......+-..|+.+...+|.+++|...++....         
T Consensus        85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------  154 (207)
T COG2976          85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------  154 (207)
T ss_pred             cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------
Confidence            333445566789999999999999999999886433 2333466778899999999999999988775321         


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      +...+......|.++...|+-++|...|++++..
T Consensus       155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            1233445566899999999999999999999985

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0025  Score=57.27  Aligned_cols=105  Identities=11%  Similarity=0.141  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP  407 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  407 (630)
                      ...+..+-.-|+-|+...+|..|...|.+.++.--.++...+..|.+.+.+....|+|..|+.-..+++.+.        
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--------  149 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--------  149 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            345555666688888888999999999998887777777778888899988888999999988888887765        


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      |....+++.-|.++....++++|..+.++.+.+
T Consensus       150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  150 PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            677788888888888888888888888887665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.32  E-value=0.0088  Score=49.36  Aligned_cols=110  Identities=20%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC--------------ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKH--------------FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      .|......|+.+.++..+++++.++..-+-++.              .....++..++..+...|++++|+..+++++. 
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~-   90 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA-   90 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-
Confidence            355556677888888888888887653322221              12234566788889999999999999999999 


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCCchh
Q 006812          524 MDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQD  575 (630)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~  575 (630)
                             .+|..-.++..+..+|...|++.+|+..|++....+.. +|..-..
T Consensus        91 -------~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~  136 (146)
T PF03704_consen   91 -------LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP  136 (146)
T ss_dssp             -------HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred             -------cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence                   45677789999999999999999999999999988886 6765333

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.31  E-value=0.076  Score=44.35  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      .....++..+...|++++|+..++.++...    .+......+-.+|+.+...+|++++|+..+.....         +.
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~  156 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES  156 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence            345667888899999999999999887631    11111233458899999999999999988775443         22


Q ss_pred             cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      -.+..-...|.++...|+-++|...|++++..
T Consensus       157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         157 WAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            23344557799999999999999999999885

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.31  E-value=0.28  Score=50.84  Aligned_cols=91  Identities=14%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      |....+...-|..+.+.| ..++|..+++. +...     .    +..-.++..+-.+|..++++++|..+|++++... 
T Consensus        40 Pn~~~a~vLkaLsl~r~g-k~~ea~~~Le~-~~~~-----~----~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~-  107 (932)
T KOG2053|consen   40 PNALYAKVLKALSLFRLG-KGDEALKLLEA-LYGL-----K----GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY-  107 (932)
T ss_pred             CCcHHHHHHHHHHHHHhc-CchhHHHHHhh-hccC-----C----CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC-
Confidence            555555555777788888 89999865543 2211     1    1134466778899999999999999999998872 


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHH
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEAL  227 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  227 (630)
                                     |. -...+.+-.+|.+.+.|.+-.
T Consensus       108 ---------------P~-eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen  108 ---------------PS-EELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             ---------------Cc-HHHHHHHHHHHHHHHHHHHHH
Confidence                           22 244556777888888776543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.30  E-value=0.17  Score=49.64  Aligned_cols=101  Identities=16%  Similarity=0.106  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      ...+..++..|++..|+..+|+.++..++-.....        ..-..+..+|.++.+.|...+|--.+..|+.-     
T Consensus       212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h--------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~d-----  278 (886)
T KOG4507|consen  212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH--------NKDIALLSLATVLHRAGFSADAAVILHAALDD-----  278 (886)
T ss_pred             hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc--------cccchhhhHHHHHHHcccccchhheeehhccC-----
Confidence            34566778888887779999999999999876443        12234567999999999999998887665543     


Q ss_pred             hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                                 .+....-++.++.++...|.+.....+|..+.+.
T Consensus       279 -----------A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~  312 (886)
T KOG4507|consen  279 -----------ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA  312 (886)
T ss_pred             -----------CccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence                       2223333667899999999998888888876643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.28  E-value=0.0025  Score=52.19  Aligned_cols=110  Identities=19%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812          468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRP---QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK  544 (630)
Q Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  544 (630)
                      |+.|.+.++....        .+|..++.+++-|.++..+.++   .++..+++.|+.-+++.+. -+|+..++++++|.
T Consensus         7 FE~ark~aea~y~--------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYA--------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHH--------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence            4455555555444        3577788888889888877554   3455666666555444332 34777789999999


Q ss_pred             HHHhc----CCHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHH
Q 006812          545 AYSSM----GSYTLAIEFQQRAIDAWESHG--PSAQDELREARRLLEQ  586 (630)
Q Consensus       545 ~~~~~----g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~A~~~~~~  586 (630)
                      +|..+    .+..+|..+|++|...|+..-  +...+.|++++++..+
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            98665    456788889999988888622  1223456666666554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.27  E-value=0.21  Score=48.62  Aligned_cols=405  Identities=11%  Similarity=0.023  Sum_probs=204.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      .+|....+|+.+-..+..+  -+++..+.|++.+..++.          .+.++.......+...+|+.....|.+++.-
T Consensus        15 ~nP~di~sw~~lire~qt~--~~~~~R~~YEq~~~~FP~----------s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNVFPS----------SPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             cCCccHHHHHHHHHHHccC--CHHHHHHHHHHHhccCCC----------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4577778888888766666  699999999998776633          3445555667777889999999999988764


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH--------
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEA--------  258 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--------  258 (630)
                      .-.+              .+..  ..+..+-...|+...+....-+|.+......+ -++.....|...+..        
T Consensus        83 vLnl--------------DLW~--lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~g  145 (656)
T KOG1914|consen   83 VLNL--------------DLWK--LYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVG  145 (656)
T ss_pred             HhhH--------------hHHH--HHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccc
Confidence            2111              1111  12444555566666666665566655544333 112112222222211        


Q ss_pred             -HHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH--------HHH--HHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812          259 -FVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRR--------LLG--VIYSGLEEHQKALEQNELSQKVLKTWGLS  327 (630)
Q Consensus       259 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  327 (630)
                       |..+.+.+.-...|++|+..--.    +-..++.-|.        ..|  .+-.....|-.|...+++...+.+.+...
T Consensus       146 k~ee~QRI~~vRriYqral~tPm~----nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~  221 (656)
T KOG1914|consen  146 KYEENQRITAVRRIYQRALVTPMH----NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRN  221 (656)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhccc
Confidence             22233566666777777641000    0000110000        011  12223445667777777666665544322


Q ss_pred             -hh-----------HHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHHhhhcch---HHHHHHHHHHHHHHhhcc
Q 006812          328 -SE-----------LLRAEIDAANMQIALG------KF--EEAINTLKGVVRQTEKESE---TRALVFISMGKALCNQEK  384 (630)
Q Consensus       328 -~~-----------~~~~~~~la~~~~~~g------~~--~~A~~~~~~~l~~~~~~~~---~~~~~~~~la~~~~~~~~  384 (630)
                       +.           ....+.++...-...+      ..  ..-.-.+++++....-.+.   ..+..+...+.++...|+
T Consensus       222 ~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d  301 (656)
T KOG1914|consen  222 APAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGD  301 (656)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcc
Confidence             11           1122222222111111      10  1112234444443332222   113334455666777777


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN---EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL  461 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  461 (630)
                      ..+|...-.++.++.+.............+..++..-...-   +++....++++.+.+....     + ..++..+-..
T Consensus       302 ~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-----~-tLv~~~~mn~  375 (656)
T KOG1914|consen  302 VPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID-----L-TLVYCQYMNF  375 (656)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC-----C-ceehhHHHHH
Confidence            65554444444444432211011122333444443322222   2555666667666653222     1 2345555555


Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006812          462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQN  541 (630)
Q Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  541 (630)
                      -.+..-...|...|.++-+.-      ..+....+...+- -|...++.+-|...|+-.+..+.     +.|...   ..
T Consensus       376 irR~eGlkaaR~iF~kaR~~~------r~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf~-----d~p~yv---~~  440 (656)
T KOG1914|consen  376 IRRAEGLKAARKIFKKAREDK------RTRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKFG-----DSPEYV---LK  440 (656)
T ss_pred             HHHhhhHHHHHHHHHHHhhcc------CCcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhcC-----CChHHH---HH
Confidence            555555778888888876621      1121222222222 25568999999999998887442     345443   33


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          542 LSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       542 la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ....+...|+-..|..+|++++..
T Consensus       441 YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  441 YLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHhc
Confidence            455667778888888888888754

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.15  Score=46.39  Aligned_cols=165  Identities=10%  Similarity=-0.048  Sum_probs=119.6

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC-hhHHHH
Q 006812          255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS-SELLRA  333 (630)
Q Consensus       255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~  333 (630)
                      -+.+.+..|++.+|-...++.++-        .|.-..++..--..++..|+.+.-...+++.   +.....+ |-...+
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kI---ip~wn~dlp~~sYv  177 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKI---IPKWNADLPCYSYV  177 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHh---ccccCCCCcHHHHH
Confidence            345566788999998888988874        3333344445556777788888777766643   3333333 666777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812          334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA  413 (630)
Q Consensus       334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  413 (630)
                      ...++..+...|-|++|.+..++++++.+.+    ..+...++.++...|++.++.++..+.....+..    ......-
T Consensus       178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D----~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHN  249 (491)
T KOG2610|consen  178 HGMYAFGLEECGIYDDAEKQADRALQINRFD----CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHN  249 (491)
T ss_pred             HHHHHhhHHHhccchhHHHHHHhhccCCCcc----hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhh
Confidence            7788899999999999999999999975544    4466778888999999999999888765544321    1223344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          414 YSEISMQYESMNEFETAISLLKRTL  438 (630)
Q Consensus       414 ~~~la~~~~~~g~~~~A~~~~~~al  438 (630)
                      |...+.++...+.++.|++.|.+-+
T Consensus       250 yWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  250 YWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hHHHHHhhhcccchhHHHHHHHHHH
Confidence            5667888889999999999998643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.25  E-value=0.11  Score=51.45  Aligned_cols=187  Identities=13%  Similarity=0.049  Sum_probs=106.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      .+|.++...|++.+|.++|.+.-..........-.-.+.+++-+...|.-++-....++-.+......   .|.      
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k---ePk------  707 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK---EPK------  707 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC---CcH------
Confidence            46788888999999999987632110000000011223444555555555554444444333222211   111      


Q ss_pred             HHHHHHHHcCCHHHHHHHH------HHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812          416 EISMQYESMNEFETAISLL------KRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK  489 (630)
Q Consensus       416 ~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (630)
                      .-|.++...|+.++|+...      +-++++.+++..   .+...+..++..+.....+.-|-++|.+.-++        
T Consensus       708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~---~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------  776 (1081)
T KOG1538|consen  708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK---AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------  776 (1081)
T ss_pred             HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch---hhhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence            2356677888888887653      445555555421   12234555666666666677776666654321        


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSI-EACQNLSKAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a  562 (630)
                              ..+..++...+++.+|....++            +|+.. .+|+-.|..+....++++|.+.|.+|
T Consensus       777 --------ksiVqlHve~~~W~eAFalAe~------------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  777 --------KSLVQLHVETQRWDEAFALAEK------------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             --------HHHhhheeecccchHhHhhhhh------------CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence                    1345566777888888665543            33332 56777788888888888888887765

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0042  Score=53.20  Aligned_cols=111  Identities=15%  Similarity=0.041  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc---c-------HHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF---G-------VGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      .++..-|+-++..|+|.+|...|..|+...+...-...|   .       ....+.|.+.|+...|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            466777888999999999999999999887665333222   2       223577899999999999999999988887


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812          523 IMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                              .+|....+|+..|.++...=+.++|..-|.++++.-..+.+
T Consensus       259 --------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  259 --------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             --------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence                    67888999999999999999999999999999987555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.21  E-value=0.00065  Score=42.11  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK  544 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  544 (630)
                      .++..+|.+|..+|++++|+..|+++++        .+|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--------~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALA--------LDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCcCCHHHHHHhhh
Confidence            3678999999999999999999999999        45666678877765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.16  E-value=0.0015  Score=38.29  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  444 (630)
                      ++.+||.+|...|++++|+++|++++.+....
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            47889999999999999999999998776544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.15  E-value=0.046  Score=46.35  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC
Q 006812          325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET  404 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  404 (630)
                      ........++..+|..|.+.|+.++|++.|.++.+... ........+..+..+....+++.....++.++..+..... 
T Consensus        30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~-  107 (177)
T PF10602_consen   30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG-  107 (177)
T ss_pred             cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-
Confidence            33456677888999999999999999999999776433 3344567888888999999999999999999998887633 


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                       +.......-..-|..+...++|.+|...|-.+..
T Consensus       108 -d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  108 -DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             -hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence             2222333444456667778999999988877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.14  E-value=0.28  Score=47.68  Aligned_cols=131  Identities=17%  Similarity=0.140  Sum_probs=93.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhh---
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG-ILDKK---  402 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~---  402 (630)
                      .......+...+.+....|.++.|...+.++...........+.+....+.+....|+..+|+..++..+. .....   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            45677888899999999999999999999887755333322345777788999999999999999888777 22221   


Q ss_pred             ----------------------cCCCcHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812          403 ----------------------ETISPEEVADAYSEISMQYESM------NEFETAISLLKRTLALLEKLPQAQHSEGSV  454 (630)
Q Consensus       403 ----------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  454 (630)
                                            ........+.++..+|......      +..+++...|.++..+.+..       ...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~k~  294 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-------EKA  294 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH-------HHH
Confidence                                  1112234567777788877777      88888999999998863322       235


Q ss_pred             HHHHHHHHHH
Q 006812          455 SARIGWLLLL  464 (630)
Q Consensus       455 ~~~la~~~~~  464 (630)
                      +..+|..+..
T Consensus       295 ~~~~a~~~~~  304 (352)
T PF02259_consen  295 WHSWALFNDK  304 (352)
T ss_pred             HHHHHHHHHH
Confidence            6666665544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.10  E-value=0.0011  Score=38.39  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                      +.++.++|.+|..+|++++|+..|++++++.+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            35789999999999999999999999999755

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.08  E-value=0.0096  Score=44.39  Aligned_cols=82  Identities=17%  Similarity=0.059  Sum_probs=63.5

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 006812          259 FVAVLNFKEALPFGLKALEIHKKGLGHN-SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA  337 (630)
Q Consensus       259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  337 (630)
                      ....|+|..|.+.+.+..+......... ......++.++|.++...|++++|+..+++++++.+..++......++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            4568999999999999998877643222 124556677899999999999999999999999999888876666666555


Q ss_pred             HHH
Q 006812          338 ANM  340 (630)
Q Consensus       338 a~~  340 (630)
                      ..+
T Consensus        88 ~~l   90 (94)
T PF12862_consen   88 ANL   90 (94)
T ss_pred             HHH
Confidence            544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.05  E-value=0.00039  Score=39.98  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 006812          516 VFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIE  557 (630)
Q Consensus       516 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  557 (630)
                      +|+++++        .+|+...+++++|.+|...|++++|++
T Consensus         1 ~y~kAie--------~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE--------LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH--------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3678888        457888999999999999999999963

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.04  E-value=0.0014  Score=40.61  Aligned_cols=42  Identities=12%  Similarity=-0.018  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGA  502 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  502 (630)
                      .++..+|.+|...|++++|+..|+++++        .+|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--------~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALA--------LDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCcCCHHHHHHhhh
Confidence            3678999999999999999999999998        35666677777764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.03  E-value=0.002  Score=37.22  Aligned_cols=31  Identities=42%  Similarity=0.601  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      .+++++|.+|..+|++++|+..|++++++-+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            5899999999999999999999999998743

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.94  E-value=0.02  Score=53.08  Aligned_cols=136  Identities=12%  Similarity=0.095  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL-TGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      +|..+.....+.+..+.|..+|.+|+.       .......+|...|.+.+. .++.+.|..+|+.+++.+        +
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~-------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~   67 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK-------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------P   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------T
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------C
Confidence            566667777777789999999999963       122234678888888666 566666999999999854        3


Q ss_pred             cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      .....+......+...|+.+.|...|++++...    . .......+|......-...|+.+....+.+++.+.+..
T Consensus        68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            344456666778889999999999999998742    1 11113357778888888999999999999999877544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.92  E-value=0.002  Score=37.26  Aligned_cols=32  Identities=31%  Similarity=0.354  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                      +.++..+|.++...|++++|+.+|++++.+.+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            35788999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.90  E-value=0.03  Score=41.72  Aligned_cols=81  Identities=20%  Similarity=0.163  Sum_probs=60.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 006812          217 KTAMGRREEALEHLQKCLEIKELILEED-SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRR  295 (630)
Q Consensus       217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  295 (630)
                      ....|+|..|++.+.+..+......... ......++.++|.++...|++++|+..+++++++.++..  +......++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence            4578999999999999998876653222 124566788899999999999999999999999998753  3334444444


Q ss_pred             HHHH
Q 006812          296 LLGV  299 (630)
Q Consensus       296 ~la~  299 (630)
                      .+..
T Consensus        86 ~~~~   89 (94)
T PF12862_consen   86 WLAN   89 (94)
T ss_pred             HHHH
Confidence            4443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.011  Score=53.38  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812          247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL  326 (630)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  326 (630)
                      ..+..+..-|+-|+...+|..|...|.+++..-.    .+....+..|.|.+-+....|+|..|+.-..+++.+      
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc----~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------  148 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC----ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------  148 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC----CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            4566777789999999999999999999987543    244466788999999999999999999988888876      


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  362 (630)
                      +|....+++.-|.+++.+.++++|..+++..+.+..
T Consensus       149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            788899999999999999999999999988876543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.85  E-value=0.002  Score=37.17  Aligned_cols=31  Identities=35%  Similarity=0.532  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      .+++.+|.++..+|++++|+++|++++++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            5789999999999999999999999998753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.79  E-value=0.0012  Score=37.98  Aligned_cols=32  Identities=28%  Similarity=0.280  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHH
Q 006812          475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAA  514 (630)
Q Consensus       475 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  514 (630)
                      |+++++        .+|....+++++|.+|...|++++|+
T Consensus         2 y~kAie--------~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIE--------LNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHH--------HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            677777        35888889999999999999999986

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.79  E-value=0.031  Score=46.04  Aligned_cols=75  Identities=15%  Similarity=0.027  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHH
Q 006812          205 IMHAVHLELANVKTAMGRR---EEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN----FKEALPFGLKALE  277 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~  277 (630)
                      ..+..+++.|.++..+.++   .++.+.++.++.-.+..+ .-+|....++.++|.+|...+.    ..+|..+|++|.+
T Consensus        23 ~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~  101 (186)
T PF06552_consen   23 LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE  101 (186)
T ss_dssp             T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence            3355666677776666544   345555555554444433 2335567889999999887653    3445555555554


Q ss_pred             HHh
Q 006812          278 IHK  280 (630)
Q Consensus       278 ~~~  280 (630)
                      .+.
T Consensus       102 ~Fq  104 (186)
T PF06552_consen  102 YFQ  104 (186)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.76  E-value=0.57  Score=46.72  Aligned_cols=183  Identities=14%  Similarity=0.152  Sum_probs=103.7

Q ss_pred             HhhHHHhhccChHHHHHHHHHH------HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          162 VMGSANYSFKRFSDSLGYLSKA------NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .++.++...|+|.+|...|.+.      ++++..+                  -.+.++.-+...|.-++-....++--+
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl------------------RMFD~aQE~~~~g~~~eKKmL~RKRA~  698 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL------------------RMFDYAQEFLGSGDPKEKKMLIRKRAD  698 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH------------------HHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence            4788888899999999988653      3332111                  112345555555655554444444333


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH------HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG------LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQK  309 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  309 (630)
                      .....   ..|.      .-|..+...|+.++|+...      +-++++..++    +......+..++..+.....+.-
T Consensus       699 WAr~~---kePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gL  765 (1081)
T KOG1538|consen  699 WARNI---KEPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGL  765 (1081)
T ss_pred             Hhhhc---CCcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccch
Confidence            22222   1121      1256667778888887653      3344444432    11112233344444444444444


Q ss_pred             HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHH
Q 006812          310 ALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAK  389 (630)
Q Consensus       310 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  389 (630)
                      |.+.|.+       +|+.       ..+..++...++|++|..+.++       .+.....+|+..|+.+....+|++|.
T Consensus       766 AaeIF~k-------~gD~-------ksiVqlHve~~~W~eAFalAe~-------hPe~~~dVy~pyaqwLAE~DrFeEAq  824 (1081)
T KOG1538|consen  766 AAEIFLK-------MGDL-------KSLVQLHVETQRWDEAFALAEK-------HPEFKDDVYMPYAQWLAENDRFEEAQ  824 (1081)
T ss_pred             HHHHHHH-------hccH-------HHHhhheeecccchHhHhhhhh-------CccccccccchHHHHhhhhhhHHHHH
Confidence            4444332       2222       2344556678888888777655       45445568888888888899999998


Q ss_pred             HHHHHHH
Q 006812          390 RCLEIAC  396 (630)
Q Consensus       390 ~~~~~a~  396 (630)
                      +.|.+|-
T Consensus       825 kAfhkAG  831 (1081)
T KOG1538|consen  825 KAFHKAG  831 (1081)
T ss_pred             HHHHHhc
Confidence            8877653

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.73  E-value=0.03  Score=51.92  Aligned_cols=133  Identities=13%  Similarity=0.090  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhhcCCCcHHHH
Q 006812          333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN-QEKFADAKRCLEIACGILDKKETISPEEVA  411 (630)
Q Consensus       333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  411 (630)
                      +|..+.....+.+..+.|..+|.++.+    .......+|...|.+-.. .++.+.|...|+.+++.+        +...
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~----~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~~~~   70 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK----DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------PSDP   70 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------TT-H
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCCH
Confidence            445555666666667888888888863    222223467777777555 556666888888888876        3344


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERL  482 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (630)
                      ..|......+...|+.+.|..+|++++..   .  .... ...+|......-...|+.+....+.+++.+..
T Consensus        71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   71 DFWLEYLDFLIKLNDINNARALFERAISS---L--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHCCT---S--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHh---c--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            56666667778888888888888888763   1  1111 12467777777788888888888888777753

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.69  Score=45.38  Aligned_cols=240  Identities=13%  Similarity=-0.021  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .....-+..+...|+.+.|+..++.+++..-+      ......++.+|.++..+.+|..|...+....+...       
T Consensus       268 ~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd-------  334 (546)
T KOG3783|consen  268 LWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD-------  334 (546)
T ss_pred             cHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-------
Confidence            44556788888889988899999888862211      22356788899999999999999999887766432       


Q ss_pred             HHHHHHHHH-HHHHHh--------ccccHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          288 VEVAHDRRL-LGVIYS--------GLEEHQKALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGV  357 (630)
Q Consensus       288 ~~~~~~~~~-la~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  357 (630)
                      -..+ .|.. .|.++.        ..|+-++|-.+++....+....|.+ |.... ..            .++.++-.+.
T Consensus       335 WS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f-~~------------RKverf~~~~  400 (546)
T KOG3783|consen  335 WSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF-IV------------RKVERFVKRG  400 (546)
T ss_pred             hhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH-HH------------HHHHHHhccc
Confidence            1111 1222 223332        2456677777777766666665544 22111 11            1111111110


Q ss_pred             HHHhhhcchHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          358 VRQTEKESETRALVFISMGKALCN--QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK  435 (630)
Q Consensus       358 l~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  435 (630)
                      - ..  .....+.-+..++.++..  .....+..    ++..........+..+..--+..+|.++...|+...|..+|.
T Consensus       401 ~-~~--~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~  473 (546)
T KOG3783|consen  401 P-LN--ASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK  473 (546)
T ss_pred             c-cc--ccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            0 00  000000012222222211  11112222    222122222222444556667788999999999999999999


Q ss_pred             HHHHHHHhCCCCCCchhHHHHHHHHHHHHcCC-hhhHHHHHHHHHHH
Q 006812          436 RTLALLEKLPQAQHSEGSVSARIGWLLLLTGK-VPQAIPYLESAAER  481 (630)
Q Consensus       436 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  481 (630)
                      ..++-......+....+.+++.+|.+|+.+|. ..++..++.+|-+.
T Consensus       474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            88866433322223336788999999999998 99999999999873

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.71  E-value=1.9  Score=50.38  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 006812          427 FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE  506 (630)
Q Consensus       427 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  506 (630)
                      ..+-+-.+++++-......+-....+.+|...|.+....|+++.|..+.-.|.+.          ....+....|..++.
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQ 1714 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHh
Confidence            3444444555544332222223334789999999999999999999998888772          244577889999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHhcC-C--------CCHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHH
Q 006812          507 LDRPQSAAQVFAFAKDIMDVSLG-P--------HHADSIEACQNLSKAYSSMGSY--TLAIEFQQRAIDAWES  568 (630)
Q Consensus       507 ~g~~~~A~~~~~~al~~~~~~~~-~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~  568 (630)
                      .|+-..|+..+++.++....-+. +        +......+...++......|++  ++-+++|+.+.++...
T Consensus      1715 ~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred             hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence            99999999999999976543211 1        1111123555566666677763  3346777777776653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.66  E-value=0.0056  Score=35.30  Aligned_cols=31  Identities=29%  Similarity=0.394  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                      .++..+|.+|...|++++|+.+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999999999999865

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.66  E-value=0.58  Score=44.04  Aligned_cols=142  Identities=18%  Similarity=0.163  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 006812          371 VFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLE  442 (630)
Q Consensus       371 ~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  442 (630)
                      ....++.+|..    ..+..+|..++..+.+          .......+.+|.+|..    ..+..+|..+|+++...  
T Consensus        75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~--  142 (292)
T COG0790          75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL--  142 (292)
T ss_pred             HHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc--
Confidence            44444544443    2346667777764322          1334566778887776    44888898888888774  


Q ss_pred             hCCCCCCch-hHHHHHHHHHHHHcC-------ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCCh
Q 006812          443 KLPQAQHSE-GSVSARIGWLLLLTG-------KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRP  510 (630)
Q Consensus       443 ~~~~~~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~  510 (630)
                         +  ++. ......++..|..-+       +...|..+|.++...       .   ...+...+|.+|..    ..++
T Consensus       143 ---g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-------~---~~~a~~~lg~~y~~G~Gv~~d~  207 (292)
T COG0790         143 ---G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-------G---NPDAQLLLGRMYEKGLGVPRDL  207 (292)
T ss_pred             ---C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-------c---CHHHHHHHHHHHHcCCCCCcCH
Confidence               2  222 233677777776642       223677777777662       2   34577888988865    3478


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC
Q 006812          511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG  550 (630)
Q Consensus       511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  550 (630)
                      .+|..+|.++-+.       .+   ...++.++ ++...|
T Consensus       208 ~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         208 KKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            9999999999873       22   46788888 666665

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.63  E-value=0.006  Score=35.17  Aligned_cols=31  Identities=35%  Similarity=0.599  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      .++..+|.+|..+|++++|..+|++++++-+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999999999998754

...

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.92  Score=45.34  Aligned_cols=105  Identities=13%  Similarity=0.095  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      ++.+-|.-.++..+|..++++|...+..+..-  ..+...+....+|+.||..+.+.+.|.+++++|-+        .+|
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--------~d~  425 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--------VDR  425 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--------hcc
Confidence            45666777888999999999999998754321  12344577888999999999999999999999977        334


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      ...-....+..+....|.-++|+........++..
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            44445556667777889999999988887766544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.43  E-value=0.034  Score=38.44  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      +.-....|.-++++. +.++|+..++++++...+       .++...++..+..+|...|+|.+++.+..+-+.+..++.
T Consensus         6 ak~~ie~GlkLY~~~-~~~~Al~~W~~aL~k~~~-------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele   77 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQN-ETQQALQKWRKALEKITD-------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE   77 (80)
T ss_pred             HHHHHHHHHHHhccc-hHHHHHHHHHHHHhhcCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            444566777788888 999999999999987643       246677788889999999999999999988888877664


Q ss_pred             h
Q 006812          192 E  192 (630)
Q Consensus       192 ~  192 (630)
                      +
T Consensus        78 d   78 (80)
T PF10579_consen   78 D   78 (80)
T ss_pred             C
Confidence            3

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=1.6  Score=43.77  Aligned_cols=104  Identities=17%  Similarity=0.110  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      ..+.+-+...+... +|..++++|+..+......    ..+...+.....+..||..+.+.++|.+++++|-+.      
T Consensus       355 ~iLWn~A~~~F~~~-~Y~~s~~~y~~Sl~~i~~D----~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~------  423 (872)
T KOG4814|consen  355 TLLWNTAKKLFKME-KYVVSIRFYKLSLKDIISD----NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV------  423 (872)
T ss_pred             HHHHHhhHHHHHHH-HHHHHHHHHHHHHHhccch----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh------
Confidence            34455666667776 9999999999999877543    223456888899999999999999999999999887      


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK  237 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  237 (630)
                                .|........+..+....|.-++|+..........
T Consensus       424 ----------d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  424 ----------DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             ----------ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence                      22233344456667778889999998887766554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.17  E-value=0.82  Score=41.53  Aligned_cols=91  Identities=15%  Similarity=0.063  Sum_probs=68.0

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 006812          426 EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL  505 (630)
Q Consensus       426 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~  505 (630)
                      .....++++.+|++.+..... ......+...+|.-|+..|++++|..+|+.+...+++.  .-..-...++..+..|+.
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~  229 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAK  229 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHH
Confidence            445678888999888877633 22234456899999999999999999999997776543  223445567788899999


Q ss_pred             HcCChhHHHHHHHH
Q 006812          506 ELDRPQSAAQVFAF  519 (630)
Q Consensus       506 ~~g~~~~A~~~~~~  519 (630)
                      ..|+.+..+.+.-+
T Consensus       230 ~~~~~~~~l~~~le  243 (247)
T PF11817_consen  230 RLGDVEDYLTTSLE  243 (247)
T ss_pred             HhCCHHHHHHHHHH
Confidence            99998887765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=1.4  Score=41.86  Aligned_cols=191  Identities=17%  Similarity=0.127  Sum_probs=138.7

Q ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      +-....+.....+.++....++..|.....+..-.+..  +.+......++..++.++.+.+..-.+..+.-.+.....+
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            33444667777899999999999999999988765543  2344567778888899999888888888888888888888


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHH-------HHHHHHHhhccHHHHHHHHHH
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFI-------SMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~-------~la~~~~~~~~~~~A~~~~~~  394 (630)
                      ...+.....+-..++......|..+.|...+..++...-.+.  .+.+.++.       .-+.. ....+.+.+..++++
T Consensus       346 y~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s-~~~e~ld~~~~~L~~  424 (482)
T KOG4322|consen  346 YSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALS-CANESLDGFPRYLDL  424 (482)
T ss_pred             hccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhh-hhhhhHHhhHHHHHH
Confidence            777766777788899999999999999999999886543221  11111111       11111 155677888888888


Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHH
Q 006812          395 ACGILDKKETISPEEVADAYSEISMQYESMNEFET---AISLLKRTLA  439 (630)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~  439 (630)
                      +..++.+..  .+..+..+.+.++..|-..|+.++   +...|+++..
T Consensus       425 A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  425 AQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            888887665  455678888999999999998654   4444555443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.95  E-value=1.7  Score=41.97  Aligned_cols=153  Identities=12%  Similarity=-0.030  Sum_probs=105.9

Q ss_pred             cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCC---------------------CCHHHHHHHHHHHHHH
Q 006812          243 EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGH---------------------NSVEVAHDRRLLGVIY  301 (630)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~~~~~~~~~la~~~  301 (630)
                      ..+|....++..++.++..+|++..|.++.++|+-..+.....                     .+...-.+++......
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            3457778999999999999999999999999998665532111                     1223445566677788


Q ss_pred             hccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHH
Q 006812          302 SGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE-SETRALVFISMGKALC  380 (630)
Q Consensus       302 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~  380 (630)
                      .+.|-+..|+++.+-.+.+    ....+-..+...+-....+.++|+--++.++.......+. ....+..-+..+.++.
T Consensus       114 ~~RG~~rTAlE~~KlLlsL----dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~  189 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSL----DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF  189 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhc----CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence            8899999999988765554    3333445566666666778888888787777655421111 1112235566667777


Q ss_pred             hhccH---------------HHHHHHHHHHHHHH
Q 006812          381 NQEKF---------------ADAKRCLEIACGIL  399 (630)
Q Consensus       381 ~~~~~---------------~~A~~~~~~a~~~~  399 (630)
                      ..++-               +.|...+.+|+..+
T Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  190 RLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            77777               88899999988776

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.93  Score=40.96  Aligned_cols=124  Identities=17%  Similarity=0.120  Sum_probs=75.1

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812          298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK  377 (630)
Q Consensus       298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~  377 (630)
                      +.-....|++.+|...|..++..      .+....+...++.+|...|+.+.|...+...-................+..
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQA------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHh------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            44556678888888888888776      455577888899999999999999888866322111111110111112211


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                      -....++......-+.            ..|+....-+.+|..+...|+.++|.+.+-..+.
T Consensus       215 qaa~~~~~~~l~~~~a------------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         215 QAAATPEIQDLQRRLA------------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHhcCCCHHHHHHHHH------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1222222222222111            1145556778899999999999999887765554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.85  E-value=0.72  Score=37.82  Aligned_cols=147  Identities=12%  Similarity=0.099  Sum_probs=95.8

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812          298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK  377 (630)
Q Consensus       298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~  377 (630)
                      |.-|+..+.-.++-..|..++++.                     ..+..++|+.-|...-+..-...|  ..+....+.
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA---------------------~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at  102 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLA---------------------QENKTDDALAAFTDLEKTGYGSYP--VLARMRAAT  102 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHH---------------------HcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHH
Confidence            344566666666666666666653                     446667888877776554333333  446777888


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHH
Q 006812          378 ALCNQEKFADAKRCLEIACGILDKKETISPEEV--ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSV  454 (630)
Q Consensus       378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~  454 (630)
                      +....|+...|..+|..+-.....      |..  -.+...-+.++...|.|+.-..-.+.       +.++.+|. ...
T Consensus       103 ~~a~kgdta~AV~aFdeia~dt~~------P~~~rd~ARlraa~lLvD~gsy~dV~srvep-------La~d~n~mR~sA  169 (221)
T COG4649         103 LLAQKGDTAAAVAAFDEIAADTSI------PQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-------LAGDGNPMRHSA  169 (221)
T ss_pred             HHhhcccHHHHHHHHHHHhccCCC------cchhhHHHHHHHHHHHhccccHHHHHHHhhh-------ccCCCChhHHHH
Confidence            999999999999999875433211      111  12334456677788888775544332       22333333 556


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          455 SARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ...||..-++.|++..|..+|.+...
T Consensus       170 rEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         170 REALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHhHHHHhccchHHHHHHHHHHHc
Confidence            67899999999999999999998765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.69  E-value=0.012  Score=33.48  Aligned_cols=31  Identities=35%  Similarity=0.620  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      ++++.+|.++...|++++|+..|++.++.++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3688999999999999999999999987653

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=1.7  Score=40.99  Aligned_cols=141  Identities=10%  Similarity=-0.076  Sum_probs=98.2

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812          259 FVAVLNFKEALPFGLKALEIHKKGLGHN--SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEID  336 (630)
Q Consensus       259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  336 (630)
                      ...+.++.+|..+-...+.-... ....  +.-.+.+|+.+..+|...|+...-...+..-+....-..+........+.
T Consensus       136 l~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~  214 (493)
T KOG2581|consen  136 LIDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL  214 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence            34457788887776665543221 1011  11345678888889998998777666666555544333345666777778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812          337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD  400 (630)
Q Consensus       337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  400 (630)
                      +-..|...+.|+.|.....++.--....+...+..++.+|.+..-+++|..|.+++-.|+....
T Consensus       215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap  278 (493)
T KOG2581|consen  215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP  278 (493)
T ss_pred             HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence            8899999999999998887754222223446688899999999999999999999999987653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.92  Score=41.00  Aligned_cols=148  Identities=16%  Similarity=0.074  Sum_probs=89.2

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-h
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-G  452 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~  452 (630)
                      ..+.-....|++.+|...+..++...        +....+...++.+|...|+.+.|...+...=.       ..... .
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-------~~~~~~~  203 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPL-------QAQDKAA  203 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcc-------cchhhHH
Confidence            34455667889999999999988876        34456778899999999999988877654211       11101 1


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      ..+.....++.+.....+....-.++-         .+|+....-+.++..+...|+.++|.+.+-..+..   ..+..+
T Consensus       204 ~~l~a~i~ll~qaa~~~~~~~l~~~~a---------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~d  271 (304)
T COG3118         204 HGLQAQIELLEQAAATPEIQDLQRRLA---------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFED  271 (304)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cccccC
Confidence            111112233334444443333322222         35767778889999999999999998887665553   222222


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 006812          533 ADSIEACQNLSKAYSSMGS  551 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~  551 (630)
                      .   .+...+-.++...|.
T Consensus       272 ~---~~Rk~lle~f~~~g~  287 (304)
T COG3118         272 G---EARKTLLELFEAFGP  287 (304)
T ss_pred             c---HHHHHHHHHHHhcCC
Confidence            2   344445555555553

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.59  E-value=0.04  Score=32.34  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP  530 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  530 (630)
                      .++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            467899999999999999999999999999876543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.57  E-value=0.34  Score=33.72  Aligned_cols=66  Identities=24%  Similarity=0.217  Sum_probs=54.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                      .-|.-++...+..+|+..++++++..     .+.++...++..+..+|...|+|.+.+.+...=+++....
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el   76 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL   76 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44555668889999999999998654     4456778889999999999999999999988888877764

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.52  E-value=1.8  Score=39.25  Aligned_cols=186  Identities=11%  Similarity=0.102  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc---h-------HHHHHHHHHHHHHHHHhc--------------
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEED---S-------RELGVANRDLAEAFVAVL--------------  263 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------  263 (630)
                      .+.+.+..++...|+..+|+..+++=+.......+..   .       ...+.-+..+|.+.....              
T Consensus        11 ~i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~   90 (247)
T PF11817_consen   11 FIAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGF   90 (247)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcch
Confidence            3456788999999999999999999888887765441   1       122333444555544332              


Q ss_pred             CHHHHHHHHHHHHHHHhhhcC-CC-------------------CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          264 NFKEALPFGLKALEIHKKGLG-HN-------------------SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       264 ~~~~A~~~~~~al~~~~~~~~-~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      -|..|-.+...--+....... +.                   .+.....+................++.+++|...++.
T Consensus        91 yy~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~  170 (247)
T PF11817_consen   91 YYQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKK  170 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            122232222222222222210 00                   0000111111111112233455678889999999888


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISMGKALCNQEKFADAKRCLE  393 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~  393 (630)
                      .+...........+|..|+..|++++|..+++.+.....+..  .....++..+..++...|+.+..+.+.-
T Consensus       171 ~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l  242 (247)
T PF11817_consen  171 YGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL  242 (247)
T ss_pred             hccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            888777788888999999999999999999999987766543  4446677788888888888887766543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=95.50  E-value=1.8  Score=38.88  Aligned_cols=178  Identities=16%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHcCCChhH
Q 006812          252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-LEEHQKALEQNELSQKVLKTWGLSSEL  330 (630)
Q Consensus       252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~  330 (630)
                      +..+|.+....|+|++.+.+.++++......       ...-.+.++.+|.. .|....+...+.....-....|. +..
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL-------t~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~   75 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL-------TEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQ   75 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC-------CHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHH
Confidence            4567899999999999999999998863221       11223333444422 23333333333222221111111 111


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHhh-----c-----cHHHHHHHHH
Q 006812          331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEK-------ESETRALVFISMGKALCNQ-----E-----KFADAKRCLE  393 (630)
Q Consensus       331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~~~~~la~~~~~~-----~-----~~~~A~~~~~  393 (630)
                      ..    +..-| ...--++-...+..++.+...       +.......+-..|..|...     |     -.+.|...|+
T Consensus        76 ~~----~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~  150 (236)
T PF00244_consen   76 VK----LIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYE  150 (236)
T ss_dssp             HH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhh
Confidence            11    00000 000112223333334433322       2222232333345444331     2     2467899999


Q ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Q 006812          394 IACGILDKKETISPEEVADAYSEISMQY-ESMNEFETAISLLKRTLALLE  442 (630)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~  442 (630)
                      +|+.+.....++.+|.......+.+..| .-.|+.++|....+++++-..
T Consensus       151 ~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~  200 (236)
T PF00244_consen  151 EALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI  200 (236)
T ss_dssp             HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            9999999877777777777777777665 458999999999888877543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.46  E-value=0.032  Score=31.70  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812          333 AEIDAANMQIALGKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  362 (630)
                      +++.+|.++...|++++|+..|++++...|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            345556666666666666666666655443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.42  E-value=7.8  Score=45.78  Aligned_cols=130  Identities=10%  Similarity=-0.003  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL  464 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  464 (630)
                      ..+-+-.+++++-....... -....+.+|...|++....|+++.|..++-+|.+..         ...++...|..++.
T Consensus      1645 ~~epILa~RRs~l~~~~~~~-~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSN-LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQ 1714 (2382)
T ss_pred             HHhHHHHHHHHHHHHhcccc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHh
Confidence            44444455555443322211 124788999999999999999999999988887631         23477889999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHhcCCC---CccH------HHHHHHHHHHHHHcCChh--HHHHHHHHHHHHH
Q 006812          465 TGKVPQAIPYLESAAERLKESFGPK---HFGV------GYIYNNLGAAYLELDRPQ--SAAQVFAFAKDIM  524 (630)
Q Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~---~~~~------~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~  524 (630)
                      .|+-..|+..+++.++.....+...   .|..      ..+...++.-....|+++  +-+.+|..+.++.
T Consensus      1715 ~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred             hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence            9999999999999997553221111   1111      123334444444555532  3446666666654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.16  E-value=0.078  Score=31.12  Aligned_cols=35  Identities=29%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      .++..||.+-...++|++|+.-|++++++.++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            47889999999999999999999999999888754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=95.05  E-value=4.1  Score=40.44  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHhCC----CCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc---HHHHHHHH
Q 006812          428 ETAISLLKRTLALLEKLP----QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG---VGYIYNNL  500 (630)
Q Consensus       428 ~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~l  500 (630)
                      ++...+++.|+..+.+..    ........+....+.++...|.+.+|...+-+.....-    .....   .+..+..+
T Consensus       272 ~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~  347 (414)
T PF12739_consen  272 DEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQA  347 (414)
T ss_pred             ccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHH
Confidence            456667777777666621    11112244557778888889998888887766665321    01122   44455566


Q ss_pred             HHHH--HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          501 GAAY--LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       501 ~~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      |.+|  ........-..-+               ...+--+..-|.-|.+.|+...|..+|.+|+.++...
T Consensus       348 a~~~~~~~~~~~~~~~~r~---------------RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~  403 (414)
T PF12739_consen  348 AYCYASLRSNRPSPGLTRF---------------RKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK  403 (414)
T ss_pred             HHhhcccccCCCCccchhh---------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence            6666  1110000000001               1111122333678999999999999999999998753

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.88  E-value=3.5  Score=38.78  Aligned_cols=167  Identities=19%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             HhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 006812          301 YSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMG  376 (630)
Q Consensus       301 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la  376 (630)
                      ....+++..+...+..+...        ........++.+|..    ..+..+|..+|+.+.+.      ..+...+.||
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~--------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~------g~~~a~~~lg  116 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL--------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD------GLAEALFNLG  116 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc--------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc------ccHHHHHhHH
Confidence            34456777777777665441        112555666766664    34578888888854432      1233677788


Q ss_pred             HHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhCC
Q 006812          377 KALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN-------EFETAISLLKRTLALLEKLP  445 (630)
Q Consensus       377 ~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~  445 (630)
                      .+|..    ..+..+|..+|.++.....       +.-..+...++.+|..-.       +...|...|.++-...    
T Consensus       117 ~~~~~G~gv~~d~~~A~~~~~~Aa~~g~-------~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----  185 (292)
T COG0790         117 LMYANGRGVPLDLVKALKYYEKAAKLGN-------VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----  185 (292)
T ss_pred             HHHhcCCCcccCHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----
Confidence            88887    4588999999999876531       111344677777776542       2336788887776641    


Q ss_pred             CCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812          446 QAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD  508 (630)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  508 (630)
                           .......+|.+|..    ..++.+|..+|.++.+.       .+   ....+.++ ++...|
T Consensus       186 -----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         186 -----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             -----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence                 33477888988866    34789999999999882       22   55777888 666666

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.83  E-value=0.46  Score=35.80  Aligned_cols=95  Identities=17%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC----Chh-------HHHHHHHHHHHHHHH
Q 006812          458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD----RPQ-------SAAQVFAFAKDIMDV  526 (630)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~-------~A~~~~~~al~~~~~  526 (630)
                      .+.-++..|++-+|+++.+..+....     ++......+..-|.++..+.    +.+       .++++|.++..    
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~----   72 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE----   72 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc----
Confidence            35678899999999999999887432     22222245556677765543    333       34455555544    


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          527 SLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       527 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                          -.|..+..++.+|.-+.....|+++..-.++++.+
T Consensus        73 ----Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   73 ----LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ----cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence                34666677777777666555666666666665543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.82  E-value=1.8  Score=36.89  Aligned_cols=61  Identities=11%  Similarity=0.092  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHH
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAK  389 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  389 (630)
                      ...+.....+|..|. ..+.++++.++.++++....+....+.++..|+.++..+|+++.|-
T Consensus       138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            456778888888776 7788999999999999988775555779999999999999999874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.67  E-value=5.9  Score=40.45  Aligned_cols=28  Identities=14%  Similarity=-0.003  Sum_probs=17.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          205 IMHAVHLELANVKTAMGRREEALEHLQK  232 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (630)
                      ..-.++.++|..+..+-.|++|.++|.+
T Consensus       794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  794 GKEDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445566666666666666666666655

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.66  E-value=0.015  Score=52.85  Aligned_cols=90  Identities=22%  Similarity=0.232  Sum_probs=79.1

Q ss_pred             HHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006812          460 WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEAC  539 (630)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  539 (630)
                      .-.+..|.+++|++.|..++.        .+|..+..+...+.++..+++...|+.-+..+++        .+|+.+.-|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~--------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--------in~Dsa~~y  185 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIE--------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--------INPDSAKGY  185 (377)
T ss_pred             HHHhcCcchhhhhcccccccc--------cCCchhhhcccccceeeeccCCchhhhhhhhhhc--------cCccccccc
Confidence            334567889999999999997        4688888999999999999999999999999998        467888888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          540 QNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       540 ~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      -..+.....+|++++|...+..++++
T Consensus       186 kfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  186 KFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             chhhHHHHHhhchHHHHHHHHHHHhc
Confidence            88899999999999999999999854

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.66  E-value=3.1  Score=37.29  Aligned_cols=82  Identities=21%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHH
Q 006812          510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY-SSMGSYTLAIEFQQRAIDAWES-HGPSAQDELREARRLLEQL  587 (630)
Q Consensus       510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~A~~~~~~~  587 (630)
                      .+.|...|++|+++....+.+.||.......+.+..| ...|+.++|.+..++|++-.-. +..-....+.++..+++.+
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlL  221 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLL  221 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence            4789999999999999989999999888877777665 6699999999999999876554 3322335577788877777


Q ss_pred             HHHh
Q 006812          588 KIKA  591 (630)
Q Consensus       588 ~~~~  591 (630)
                      +...
T Consensus       222 rdNl  225 (236)
T PF00244_consen  222 RDNL  225 (236)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.66  E-value=2.1  Score=35.25  Aligned_cols=150  Identities=15%  Similarity=0.118  Sum_probs=99.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 006812          256 AEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEI  335 (630)
Q Consensus       256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  335 (630)
                      |.-|+..+.-.++-..|..+|++...                       +..++|+..|..    ++..|-......+..
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA~~-----------------------~k~d~Alaaf~~----lektg~g~YpvLA~m   98 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLAQE-----------------------NKTDDALAAFTD----LEKTGYGSYPVLARM   98 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHHHc-----------------------CCchHHHHHHHH----HHhcCCCcchHHHHH
Confidence            45566777777777777777765543                       344555554443    333344444456677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      ..+.+....|+...|+..|.++-...+......-.+...-+.++...|-|++.....+.       ..++..|....+..
T Consensus        99 r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-------La~d~n~mR~sArE  171 (221)
T COG4649          99 RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-------LAGDGNPMRHSARE  171 (221)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-------ccCCCChhHHHHHH
Confidence            88899999999999999998876543322222233455556777888888776554332       22333455666778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          416 EISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       416 ~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                      .||..-.+.|++.+|...|.....
T Consensus       172 ALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         172 ALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHhHHHHhccchHHHHHHHHHHHc
Confidence            889999999999999999988665

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.52  E-value=3.7  Score=37.53  Aligned_cols=230  Identities=13%  Similarity=0.070  Sum_probs=105.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 006812          219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLG  298 (630)
Q Consensus       219 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  298 (630)
                      ++++|++|++.+...                      +..+.+.|++..|.++..-.++.+.+...+.+.   ....+++
T Consensus         2 ~~kky~eAidLL~~G----------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~---~~~~rl~   56 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSG----------------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDE---ESIARLI   56 (260)
T ss_dssp             HTT-HHHHHHHHHHH----------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SH---HHHHHHH
T ss_pred             ccccHHHHHHHHHHH----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence            456777777665553                      344555556666665555555555542211111   1223444


Q ss_pred             HHHhccccHH-HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812          299 VIYSGLEEHQ-KALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK  377 (630)
Q Consensus       299 ~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~  377 (630)
                      .+....+.-+ +-..+..++++..+..+........+..+|..+++.|++.+|..++-..-     ++.  ..++..+-.
T Consensus        57 ~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-----~~~--~~~~~~ll~  129 (260)
T PF04190_consen   57 ELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-----DPS--AFAYVMLLE  129 (260)
T ss_dssp             HHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHH--HHHHHHHHH
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-----Chh--HHHHHHHHH
Confidence            4444443222 23455666666663323335677888888999999999888887774321     111  111111111


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----CC------C
Q 006812          378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL----PQ------A  447 (630)
Q Consensus       378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~------~  447 (630)
                      .....|...+.                      .........-|...++...|...+..-.+.....    ..      .
T Consensus       130 ~~~~~~~~~e~----------------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~  187 (260)
T PF04190_consen  130 EWSTKGYPSEA----------------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPP  187 (260)
T ss_dssp             HHHHHTSS--H----------------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEES
T ss_pred             HHHHhcCCcch----------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCC
Confidence            11112221111                      1112222234566788888888777766552211    10      1


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD  508 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  508 (630)
                      ..|.... ..+-..-+..+    +...|....+.+...+. .+|.....+..+|..|+...
T Consensus       188 ~~PllnF-~~lLl~t~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  188 SYPLLNF-LQLLLLTCERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             S-HHHHH-HHHHHHHHHHT-----HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---
T ss_pred             CCchHHH-HHHHHHHHhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCC
Confidence            1121111 11222223333    34566666665555433 24566677788888887654

; PDB: 3LKU_E 2WPV_G.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.51  E-value=0.055  Score=51.80  Aligned_cols=93  Identities=13%  Similarity=0.033  Sum_probs=47.3

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Q 006812          296 LLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISM  375 (630)
Q Consensus       296 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l  375 (630)
                      +-+.....-++++.|+..|.+|++      .+|..+..+.+.+..+...+++..|+.-+.++++.    .+....+|+..
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~------ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~----dP~~~K~Y~rr   78 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIE------LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL----DPTYIKAYVRR   78 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHh------cCCcceeeechhhhhheeechhhhHHHHHHhhhhc----Cchhhheeeec
Confidence            444445555555555555554443      33444445555555555555555555555555552    23334455555


Q ss_pred             HHHHHhhccHHHHHHHHHHHHHH
Q 006812          376 GKALCNQEKFADAKRCLEIACGI  398 (630)
Q Consensus       376 a~~~~~~~~~~~A~~~~~~a~~~  398 (630)
                      |.+....+.+.+|...|+....+
T Consensus        79 g~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   79 GTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             cHHHHhHHHHHHHHHHHHHhhhc
Confidence            55555555555555555544433

>PRK14707 hypothetical protein; Provisional

Probab=94.44  E-value=13  Score=43.54  Aligned_cols=361  Identities=12%  Similarity=0.059  Sum_probs=183.1

Q ss_pred             HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      ..++++.-.+++|.++..+-.-+..+...+..+.      +...  ...-..++.++...++|.+...+-.-++.+...+
T Consensus       835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~------~LR~--aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL  906 (2710)
T PRK14707        835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLADEP------ELRH--TLTAHGVVIVLNALSKWPNVPVCAAAASALAERL  906 (2710)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCh------hhhh--ccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHH
Confidence            4567777788888888887777777776654433      1110  1112346778888888888777777777777666


Q ss_pred             hccchHHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH--HHHHHHHHhccccHHHHHHHHHH
Q 006812          241 LEEDSRELGV--ANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD--RRLLGVIYSGLEEHQKALEQNEL  316 (630)
Q Consensus       241 ~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~  316 (630)
                      .  +++....  .-..+++++-...+|.++-.+-.-+..+...+..  .+.....  -..++++...++++.+.-.+-.-
T Consensus       907 ~--~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~A  982 (2710)
T PRK14707        907 A--DEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEV  982 (2710)
T ss_pred             h--cCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHH
Confidence            3  3333332  2345677777777777766555555555554432  2222221  23456666667777666666655


Q ss_pred             HHHHHHHcCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--cchHH--HHHHHHHHHHHHhhccHHHHHH
Q 006812          317 SQKVLKTWGLSSELLRA--EIDAANMQIALGKFEEAINTLKGVVRQTEK--ESETR--ALVFISMGKALCNQEKFADAKR  390 (630)
Q Consensus       317 a~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~--~~~~~~la~~~~~~~~~~~A~~  390 (630)
                      +..+...+..++.....  -..+++++..+.+|.++-.+-.-+..+...  ..+..  +..-..++.++....+|.+...
T Consensus       983 A~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~ 1062 (2710)
T PRK14707        983 VDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPV 1062 (2710)
T ss_pred             HHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchh
Confidence            55665555444333222  234566666666665433333222222211  11111  1122344555555556655444


Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChh
Q 006812          391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVP  469 (630)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~  469 (630)
                      +-.-+..+.........-..+..-..++.++...-+|.+.-.+-..++.+...+.....+. ......++.+.-...+|.
T Consensus      1063 Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp 1142 (2710)
T PRK14707       1063 CLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWP 1142 (2710)
T ss_pred             HHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCC
Confidence            4333333333211000000111123345555555566666666666666666664433332 222355666666666665


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          470 QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       470 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      ....+=.-+..+.........-..+..-..++..+-...++.+.-.+-+-++.+....-....|
T Consensus      1143 ~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P 1206 (2710)
T PRK14707       1143 GTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELP 1206 (2710)
T ss_pred             CchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCC
Confidence            5444444444444433221111111122355666666666666666655555555544333333

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.40  E-value=9.6  Score=41.74  Aligned_cols=109  Identities=16%  Similarity=0.004  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812          111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL  190 (630)
Q Consensus       111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  190 (630)
                      +...++.....+.... .|+.|+..|++.-.-+     ++..  +--.+.+.+|.....+-.-..--+.|.+|+.-++.+
T Consensus       474 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (932)
T PRK13184        474 LRVSCLAVPDAFLAEK-LYDQALIFYRRIRESF-----PGRK--EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL  545 (932)
T ss_pred             eeeecccCcHHHHhhH-HHHHHHHHHHHHhhcC-----CCcc--cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            3445666777777776 8999999998855444     2222  234466778888776544443346777888777777


Q ss_pred             hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK  237 (630)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  237 (630)
                      .+..          ....-|...|.+|..+|+|++-+++|.-|++-+
T Consensus       546 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (932)
T PRK13184        546 HGGV----------GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY  582 (932)
T ss_pred             cCCC----------CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            5543          222346678889999999999999999998765

>PRK14707 hypothetical protein; Provisional

Probab=94.37  E-value=14  Score=43.44  Aligned_cols=341  Identities=14%  Similarity=0.099  Sum_probs=182.0

Q ss_pred             HhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 006812          162 VMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELIL  241 (630)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  241 (630)
                      .++.++-...+|.+...+-+-+..+...+..+.      +..  ....--.+++++...++|.++..+-..+..+.... 
T Consensus       794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp------~Lr--~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RL-  864 (2710)
T PRK14707        794 EMTNALNALSKWPDTPACAAAASALAARVADDP------RLR--EAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERL-  864 (2710)
T ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcCh------hHH--HhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHH-
Confidence            345555556667666666666666666554322      110  11112357788888888888777777777776655 


Q ss_pred             ccchHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHH--HHHHHHHHHhccccHHHHHHHHHHH
Q 006812          242 EEDSRELGVA--NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH--DRRLLGVIYSGLEEHQKALEQNELS  317 (630)
Q Consensus       242 ~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a  317 (630)
                       ...+.....  -..++.++.-.+++.+...+-.-++.+...+.  +.+....  .-..++++...+.++.++-.+-.-+
T Consensus       865 -a~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa  941 (2710)
T PRK14707        865 -ADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPELRKALSAHRVATALNALSKWPDIPVCATAA  941 (2710)
T ss_pred             -hcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHHHHhhccHHHHHHHHhhhccCCCchHHHHHH
Confidence             333333222  24466777777788887777777777666554  2222222  2234566666666766655555555


Q ss_pred             HHHHHHcCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chH--HHHHHHHHHHHHHhhccHHHHHHH
Q 006812          318 QKVLKTWGLSSELLRAE--IDAANMQIALGKFEEAINTLKGVVRQTEKE--SET--RALVFISMGKALCNQEKFADAKRC  391 (630)
Q Consensus       318 ~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~--~~~~~~~la~~~~~~~~~~~A~~~  391 (630)
                      ..+...+..++.....+  ..+++++..+++|.+...+-.-+..+....  .+.  ....-..++.++....+|.++-.+
T Consensus       942 ~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~C 1021 (2710)
T PRK14707        942 SALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVC 1021 (2710)
T ss_pred             HHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHH
Confidence            56666665555444333  356777777777766544443333222211  010  111223445555555666555444


Q ss_pred             HHHHHHHHHhhcCCCcHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCCh
Q 006812          392 LEIACGILDKKETISPEEVAD--AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKV  468 (630)
Q Consensus       392 ~~~a~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~  468 (630)
                      -.-+..+......  .+....  .-..++.++....+|.+.-.+-.-+..+...+....... ...-..++.++-...+|
T Consensus      1022 r~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKW 1099 (2710)
T PRK14707       1022 AATVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKW 1099 (2710)
T ss_pred             HHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcC
Confidence            4444444443221  122211  123455566666666655444444444444432211111 11225677788888888


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH
Q 006812          469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV  516 (630)
Q Consensus       469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  516 (630)
                      .+.-.+-+-++.+....-...++.....-..++.+.....++.....+
T Consensus      1100 P~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~c 1147 (2710)
T PRK14707       1100 PDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQAC 1147 (2710)
T ss_pred             CCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHH
Confidence            887777777777776664443443333344555555555555543333

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.25  E-value=0.66  Score=35.00  Aligned_cols=100  Identities=18%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812          338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ----EKFADAKRCLEIACGILDKKETISPEEVADA  413 (630)
Q Consensus       338 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  413 (630)
                      |.-++..|++-+|+++.+..+...+++... ...+..-|.++..+    .+.+-=..++.-+++-+.+..... |..+..
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~-~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls-p~~A~~   80 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESS-WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS-PDSAHS   80 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCch-HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC-hhHHHH
Confidence            444566677777777777766655443321 12333444444332    222222233333333333222212 455667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          414 YSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       414 ~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                      ++.+|.-+.....|+++..-.++++.
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            77776655444455555555555544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.22  E-value=5.6  Score=38.42  Aligned_cols=140  Identities=15%  Similarity=0.002  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHH-HhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812          114 VGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQ-VMGSANYSFKRFSDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       114 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  192 (630)
                      .+...|-++..++ ++.+|...|.+..+-....     +....-..+. .+-++| -    -+.++..+..+...++..+
T Consensus         8 llc~Qgf~Lqkq~-~~~esEkifskI~~e~~~~-----~f~lkeEvl~grilnAf-f----l~nld~Me~~l~~l~~~~~   76 (549)
T PF07079_consen    8 LLCFQGFILQKQK-KFQESEKIFSKIYDEKESS-----PFLLKEEVLGGRILNAF-F----LNNLDLMEKQLMELRQQFG   76 (549)
T ss_pred             HHHHhhHHHHHHh-hhhHHHHHHHHHHHHhhcc-----hHHHHHHHHhhHHHHHH-H----HhhHHHHHHHHHHHHHhcC
Confidence            3455677777887 9999999999876554321     1111112222 222222 2    2334444444444444433


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHH----------HHHHHHHHHHHHHHh
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE----------LGVANRDLAEAFVAV  262 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----------~~~~~~~la~~~~~~  262 (630)
                      ..            .....-.|...++.+.|.+|++.+...-+-....   ..+.          ....-...+.+....
T Consensus        77 ~s------------~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~  141 (549)
T PF07079_consen   77 KS------------AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIET  141 (549)
T ss_pred             Cc------------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhc
Confidence            22            2344557888899999999998776543321111   1110          011223457888999


Q ss_pred             cCHHHHHHHHHHHHHHH
Q 006812          263 LNFKEALPFGLKALEIH  279 (630)
Q Consensus       263 g~~~~A~~~~~~al~~~  279 (630)
                      |+|.++...+++.+...
T Consensus       142 g~f~EgR~iLn~i~~~l  158 (549)
T PF07079_consen  142 GRFSEGRAILNRIIERL  158 (549)
T ss_pred             CCcchHHHHHHHHHHHH
Confidence            99999999999877643

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.17  E-value=0.05  Score=52.08  Aligned_cols=94  Identities=15%  Similarity=0.041  Sum_probs=80.0

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                      -+-+.-.+.-+.|+.|+..|.++++        -+|..+..+.+.+.++.+.+++..|+.-+.+|++        ..|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~--------ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--------~dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIE--------LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--------LDPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHh--------cCCcceeeechhhhhheeechhhhHHHHHHhhhh--------cCchh
Confidence            4456667788899999999999998        3566677778888999999999999999999999        56888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ..+|+.-|.+....+++.+|...|+....+
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            889988899999999999988888777654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.17  E-value=7  Score=39.30  Aligned_cols=125  Identities=12%  Similarity=0.040  Sum_probs=72.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      +..+.+..++.+...+-..      -|..-..|...+..-.+.|..+.+...|++++.-+.-.               ..
T Consensus        56 ~~~~~~~~~r~~y~~fL~k------yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S---------------vd  114 (577)
T KOG1258|consen   56 DSIEDVDALREVYDIFLSK------YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS---------------VD  114 (577)
T ss_pred             CchhHHHHHHHHHHHHHhh------CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH---------------HH
Confidence            4455556666655554322      24455566778888889999999999999998863311               11


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI  278 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  278 (630)
                      .....++.+-...|+.+.-...|++|.......+-.     ...+-..-..-..++++..-...|++.+++
T Consensus       115 lW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S-----~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  115 LWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLS-----DPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhc-----cHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            112223444446677777677777777654322111     122222223335566677777777776664

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.17  E-value=5.8  Score=38.33  Aligned_cols=151  Identities=16%  Similarity=0.098  Sum_probs=93.8

Q ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC---------------------CCcHHHHHHHHHHHHHHHH
Q 006812          365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET---------------------ISPEEVADAYSEISMQYES  423 (630)
Q Consensus       365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~  423 (630)
                      .|....++..++.++..+|+...|.+++++|+-.++....                     ......-.++........+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            3444556667777777777777777777776655542110                     0111233455666777889


Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCCC-CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 006812          424 MNEFETAISLLKRTLALLEKLPQAQ-HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGA  502 (630)
Q Consensus       424 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  502 (630)
                      .|-+..|.++.+-.+.+     ++. .|. .+...+=....+.++|+--+.+++..........-..-|+   ..+..+.
T Consensus       116 RG~~rTAlE~~KlLlsL-----dp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~aL  186 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSL-----DPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIAL  186 (360)
T ss_pred             cCcHHHHHHHHHHHHhc-----CCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHHH
Confidence            99999999999888876     333 222 3455555666777888777777765544211000001232   4557788


Q ss_pred             HHHHcCCh---------------hHHHHHHHHHHHHH
Q 006812          503 AYLELDRP---------------QSAAQVFAFAKDIM  524 (630)
Q Consensus       503 ~~~~~g~~---------------~~A~~~~~~al~~~  524 (630)
                      ++...++-               ++|...+.+|+..+
T Consensus       187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            88888888               89999999998754

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.04  E-value=0.98  Score=34.47  Aligned_cols=80  Identities=16%  Similarity=0.106  Sum_probs=60.2

Q ss_pred             HHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 006812          160 LQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL  239 (630)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  239 (630)
                      +..+|...++.+++-.++-.|++|+.+.+++.... ..+..|........+.+|+..+..+|+.+-.++|++-|-+....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~-~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESN-EIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccc-cccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            35688889999999999999999999988884332 12222333344467789999999999999999999877655444


Q ss_pred             H
Q 006812          240 I  240 (630)
Q Consensus       240 ~  240 (630)
                      .
T Consensus        83 L   83 (140)
T PF10952_consen   83 L   83 (140)
T ss_pred             h
Confidence            3

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.01  E-value=7.1  Score=38.77  Aligned_cols=173  Identities=13%  Similarity=0.064  Sum_probs=95.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHHHHHhhcC-
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISMGKALCNQEKF-------ADAKRCLEIACGILDKKET-  404 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~~~~~-  404 (630)
                      ..+|++++..++|+-|...|+.+.+.+..+.  ...+.+....|.+....+..       ++...+++.|...+..... 
T Consensus       212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~  291 (414)
T PF12739_consen  212 RRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALP  291 (414)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcc
Confidence            3456666666666666666666665553322  22233444444444444422       3666777777777665211 


Q ss_pred             --CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc---hhHHHHHHHHHH--HHcCChhhHHHHHHH
Q 006812          405 --ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS---EGSVSARIGWLL--LLTGKVPQAIPYLES  477 (630)
Q Consensus       405 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A~~~~~~  477 (630)
                        ..+.....+....+.++...|.+.+|...+-+.....-   .....   .+.++..+|.+|  ........-..-   
T Consensus       292 ~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l---~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r---  365 (414)
T PF12739_consen  292 RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL---ESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR---  365 (414)
T ss_pred             ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH---hhhhhhHhhHHHHHHHHHhhcccccCCCCccchh---
Confidence              11123445666777888888998888777666655321   01111   233445555555  111000000000   


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          478 AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       478 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                                  ....+.-+..-|.-|...|+...|..+|.+++.++.
T Consensus       366 ------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  366 ------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             ------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence                        112233344557889999999999999999999875

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.88  E-value=0.027  Score=51.22  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCC
Q 006812          118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGG  197 (630)
Q Consensus       118 ~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  197 (630)
                      .+...+..| ++++|++.|..++.+.          |..+..+...+.++..+++...|+..+..++.+           
T Consensus       120 ~A~eAln~G-~~~~ai~~~t~ai~ln----------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-----------  177 (377)
T KOG1308|consen  120 QASEALNDG-EFDTAIELFTSAIELN----------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-----------  177 (377)
T ss_pred             HHHHHhcCc-chhhhhcccccccccC----------CchhhhcccccceeeeccCCchhhhhhhhhhcc-----------
Confidence            344455666 9999999999988654          456778888999999999999999999999988           


Q ss_pred             CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          198 SVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                           .+..+..|-..|.....+|+|++|...+..+.++
T Consensus       178 -----n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  178 -----NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             -----CcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence                 3333455667889999999999999999988754

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=5.6  Score=36.55  Aligned_cols=114  Identities=14%  Similarity=0.125  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                      ..+...++.+.+..|++.|+-+.|.+.+.+...-.-..|...+.......+|.+|....-..+.++-.+..++..+.- +
T Consensus       100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW-e  178 (393)
T KOG0687|consen  100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW-E  178 (393)
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh-h
Confidence            346678888999999999999999999999888777788888888889999999987776666666666666544321 1


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDK  401 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  401 (630)
                      ..-..-..-|.......+|.+|...|-.++..+..
T Consensus       179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence            11112223344555667888888888877766543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=9.1  Score=38.02  Aligned_cols=259  Identities=14%  Similarity=0.025  Sum_probs=148.0

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812          294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI  373 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~  373 (630)
                      ++.....+...++.+.  +...+++.....  ..|..+.....-+.++...|+.+.|+..+...++  ..........+.
T Consensus       234 y~~~~~~~~~~p~~d~--~~~~~~Ll~~~~--~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~f  307 (546)
T KOG3783|consen  234 YYQFISFVLGTPNPDG--EECEKALKKYRK--RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVF  307 (546)
T ss_pred             HHHHHHHHcCCCCccH--HHHHHHhHHHHH--hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHH
Confidence            3344445555555554  222222222211  1244555666778888888998888888888877  333444566888


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-HHH--------HHcCCHHHHHHHHHHHHHHHHhC
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEIS-MQY--------ESMNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~~~~~~  444 (630)
                      .+|.++..+.+|..|-..+....+..+-.       . ..|..++ -++        ...|+-++|..+++....+....
T Consensus       308 E~aw~~v~~~~~~~aad~~~~L~desdWS-------~-a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a  379 (546)
T KOG3783|consen  308 ERAWLSVGQHQYSRAADSFDLLRDESDWS-------H-AFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA  379 (546)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhhh-------H-HHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc
Confidence            89999999999999998888766554211       1 1222222 222        22446666766666665555443


Q ss_pred             CCCCCchhHHHHHHHHHHHHcCC---------------------hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 006812          445 PQAQHSEGSVSARIGWLLLLTGK---------------------VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA  503 (630)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  503 (630)
                      . ...|.-.....-+.-+...+.                     -.-+..-..++..-...-.-.+..+..--+..+|.+
T Consensus       380 ~-K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~  458 (546)
T KOG3783|consen  380 G-KNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVI  458 (546)
T ss_pred             c-ccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence            2 111211111222222222221                     000111111111111110011223344456788999


Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Q 006812          504 YLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS-YTLAIEFQQRAIDAWES  568 (630)
Q Consensus       504 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  568 (630)
                      +..+|+...|..+|..+++-.. ....+.--.+-+++.+|..|..+|. ..++..++.+|-+....
T Consensus       459 lR~Lg~~~~a~~~f~i~~~~e~-~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  459 LRNLGDSEVAPKCFKIQVEKES-KRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            9999999999999998886422 2122333445799999999999999 99999999999766533

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.20  E-value=8.7  Score=37.23  Aligned_cols=136  Identities=16%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHH--hh
Q 006812          328 SELLRAEIDAANMQIALGK-FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKR--CLEIACGILD--KK  402 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~a~~~~~--~~  402 (630)
                      ...+.-+...|.-++..|. -++|+++++.++...+-+......+....-.      .|.+|..  .+.+.+.+..  ..
T Consensus       376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq------~Y~qaLs~~~~~rLlkLe~fi~e  449 (549)
T PF07079_consen  376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQ------AYKQALSMHAIPRLLKLEDFITE  449 (549)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHH------HHHHHHhhhhHHHHHHHHHHHHh
Confidence            4566677778888999998 7889999998887655443222222222212      2233321  1222222211  11


Q ss_pred             cCCCc--HHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          403 ETISP--EEVADAYSEI--SMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       403 ~~~~~--~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                      .|..+  ......-+.+  |..++.+|++.++.-+-.=..++        .|.+.++..+|.+.....+|++|..++..
T Consensus       450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------APSPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            11111  1122233333  45677899999988766555444        23556889999999999999999998875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.94  E-value=0.51  Score=28.84  Aligned_cols=41  Identities=34%  Similarity=0.486  Sum_probs=31.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812          540 QNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ  586 (630)
Q Consensus       540 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~  586 (630)
                      .+||..|..+|+.+.|.+.+++.+.      ........+|..++.+
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~------~~~~~q~~eA~~LL~~   43 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE------EGDEAQRQEARALLAQ   43 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH------cCCHHHHHHHHHHHhc
Confidence            5789999999999999999999984      1234556677777654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.82  E-value=1.9  Score=36.78  Aligned_cols=77  Identities=14%  Similarity=0.177  Sum_probs=56.9

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006812          468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS  547 (630)
Q Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  547 (630)
                      -++|...|-++-.       ....+.+.....||..|. ..+.++|+..+.+++++...    ++.-..+++..|+.+|.
T Consensus       122 d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~  189 (203)
T PF11207_consen  122 DQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQ  189 (203)
T ss_pred             cHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHH
Confidence            3666666554432       344566778888888776 67899999999999997643    32233478899999999


Q ss_pred             hcCCHHHHH
Q 006812          548 SMGSYTLAI  556 (630)
Q Consensus       548 ~~g~~~~A~  556 (630)
                      .+|+++.|.
T Consensus       190 ~~~~~e~AY  198 (203)
T PF11207_consen  190 KLKNYEQAY  198 (203)
T ss_pred             Hhcchhhhh
Confidence            999999885

>smart00028 TPR Tetratricopeptide repeats

Probab=92.53  E-value=0.21  Score=27.70  Aligned_cols=29  Identities=38%  Similarity=0.669  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          537 EACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      .++..+|.++...|++++|...+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            46789999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.38  E-value=5.5  Score=37.87  Aligned_cols=105  Identities=12%  Similarity=0.055  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---
Q 006812          247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT---  323 (630)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---  323 (630)
                      .+-.++..+|..|...|+++.|++.|.++-+.+.     ....+...+.++-.+-...|+|..-..+..+|......   
T Consensus       148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT-----s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~  222 (466)
T KOG0686|consen  148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCT-----SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN  222 (466)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc-----chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence            4467889999999999999999999999877765     34466777778888888899998888888777665211   


Q ss_pred             c-CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          324 W-GLSSELLRAEIDAANMQIALGKFEEAINTLKGVV  358 (630)
Q Consensus       324 ~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  358 (630)
                      . ..-+....+..  |.+.+.+++|..|..++-.+.
T Consensus       223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence            0 11122233333  334445557777777765543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=11  Score=36.00  Aligned_cols=140  Identities=15%  Similarity=0.066  Sum_probs=98.0

Q ss_pred             hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH
Q 006812          169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSREL  248 (630)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  248 (630)
                      ...++.+|...-+..+.-.. ..+.      ....-..+.+|+.+..+|...|+...-...+..-+...  .+..+....
T Consensus       138 d~K~~kea~~~~~~~l~~i~-~~nr------RtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~q  208 (493)
T KOG2581|consen  138 DQKEYKEADKISDALLASIS-IQNR------RTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQ  208 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-hcch------hhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhH
Confidence            45788888877766544311 1111      12233456778888899999998766655555544433  344555667


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL  321 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  321 (630)
                      +...+.|-..|...+.|+.|.....++.-  +.  ...+.+.+..++.+|.+..-+++|..|.+++-+|+...
T Consensus       209 avLiN~LLr~yL~n~lydqa~~lvsK~~~--pe--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  209 AVLINLLLRNYLHNKLYDQADKLVSKSVY--PE--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcccC--cc--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            78888899999999999999988776541  11  11233778888999999999999999999999988863

>smart00028 TPR Tetratricopeptide repeats

Probab=92.21  E-value=0.2  Score=27.76  Aligned_cols=30  Identities=33%  Similarity=0.463  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIH  279 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  279 (630)
                      .++..+|.++...|++++|+..+++++++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            357889999999999999999999998753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.16  E-value=2.1  Score=35.01  Aligned_cols=118  Identities=14%  Similarity=0.009  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      +..+..+..+-...++.+++..++.-.--        -.|.....-..-|.++...|++.+|+..++....        .
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrv--------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------~   73 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRV--------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------R   73 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHH--------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------c
Confidence            34556677777788899998888765443        2366666777889999999999999999999755        4


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhcCCC
Q 006812          532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGAS  595 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  595 (630)
                      .|....+-..++.|+..+|+.+    +-.-|-+..+.-.+      ..++.+...+..+.....
T Consensus        74 ~~~~p~~kALlA~CL~~~~D~~----Wr~~A~evle~~~d------~~a~~Lv~~Ll~~~~~~~  127 (160)
T PF09613_consen   74 APGFPYAKALLALCLYALGDPS----WRRYADEVLESGAD------PDARALVRALLARADLEP  127 (160)
T ss_pred             CCCChHHHHHHHHHHHHcCChH----HHHHHHHHHhcCCC------hHHHHHHHHHHHhccccc
Confidence            4544456677899999999863    22223333333211      235566666666655443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.96  E-value=2.9  Score=34.26  Aligned_cols=88  Identities=17%  Similarity=0.092  Sum_probs=63.7

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      .+...+..+..+-...++.+++...+.-.-.+                .|.....-..-|.++...|+|.+|+..++...
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------------RPEFPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45666777788888889999998888665555                33344555568999999999999999999854


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFK  266 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (630)
                              ...+....+--.++.|+...|+.+
T Consensus        72 --------~~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   72 --------ERAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             --------ccCCCChHHHHHHHHHHHHcCChH
Confidence                    333444455556777887777654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.89  E-value=2  Score=42.67  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=73.1

Q ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          413 AYSEISMQY-ESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       413 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      .+.+++..| ..+|+..+|..++..++-+...     +..-.++..+|.++.+.|...+|--++..|+.        +-+
T Consensus       214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-----h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~--------dA~  280 (886)
T KOG4507|consen  214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSR-----HNKDIALLSLATVLHRAGFSADAAVILHAALD--------DAD  280 (886)
T ss_pred             HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-----ccccchhhhHHHHHHHcccccchhheeehhcc--------CCc
Confidence            344555555 4579999999999999887433     33334778999999999999999888877766        223


Q ss_pred             cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      ....-++.++.++..+|++.....+|..+.+.
T Consensus       281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~  312 (886)
T KOG4507|consen  281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA  312 (886)
T ss_pred             cccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence            33334678888999999988888888877653

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.56  E-value=10  Score=34.26  Aligned_cols=132  Identities=13%  Similarity=0.082  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC
Q 006812          266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG  345 (630)
Q Consensus       266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g  345 (630)
                      ++-++-+.+.++-.+...  ...+.+.++.++|..|.+.++.+.+.++..+..+-.-..|...+...+...+|.+|..+.
T Consensus        92 eeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~  169 (412)
T COG5187          92 EEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK  169 (412)
T ss_pred             HHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH
Confidence            344445555555444322  234677889999999999999999999999988877777888888888888999998877


Q ss_pred             CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812          346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD  400 (630)
Q Consensus       346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  400 (630)
                      -.++.++..+..++....- +..-..-...|.......+|.+|...+-..+..+.
T Consensus       170 vV~e~lE~~~~~iEkGgDW-eRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         170 VVEESLEVADDIIEKGGDW-ERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHHHHHHHHHHHHhCCCH-HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            7777777777777654332 11112222345555666788888888777766554

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=91.42  E-value=4.2  Score=31.21  Aligned_cols=76  Identities=16%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD-------SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       497 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      +..+|......+++-.++-.|++|+.+.++....+..+       .+....+||..+..+|+.+-.++|++-|-+....+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            45678888999999999999999999988774222111       22467899999999999999999999888776665


Q ss_pred             CCC
Q 006812          570 GPS  572 (630)
Q Consensus       570 ~~~  572 (630)
                      -|.
T Consensus        84 iPQ   86 (140)
T PF10952_consen   84 IPQ   86 (140)
T ss_pred             ccC
Confidence            553

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=91.40  E-value=12  Score=34.61  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812          205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG  284 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  284 (630)
                      ....++.+.+..|.+.|+-+.|++.+.+..+-.-..  ...-++.-....+|..|....-..+.+   +++-.+.++-.+
T Consensus       102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~~lV~~~i---ekak~liE~GgD  176 (393)
T KOG0687|consen  102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDHDLVTESI---EKAKSLIEEGGD  176 (393)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccHHHHHHHH---HHHHHHHHhCCC
Confidence            345677788888888888888888888765433322  333455555666776665544333333   333333333111


Q ss_pred             CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          285 HNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                      -+..+...+|  -|.......++.+|-..|-.++..
T Consensus       177 WeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsT  210 (393)
T KOG0687|consen  177 WERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVST  210 (393)
T ss_pred             hhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHccc
Confidence            1111222222  233444455666666666554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.36  E-value=2.6  Score=27.09  Aligned_cols=29  Identities=14%  Similarity=0.024  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      +.++.+|..+.+.|+|++|..+.+.++++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            36788999999999999999999999995

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.30  E-value=0.39  Score=25.39  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812          537 EACQNLSKAYSSMGSYTLAIEFQQR  561 (630)
Q Consensus       537 ~~~~~la~~~~~~g~~~~A~~~~~~  561 (630)
                      .+...+|.++...|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            3678899999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.19  E-value=14  Score=35.18  Aligned_cols=171  Identities=11%  Similarity=-0.017  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHH
Q 006812          408 EEVADAYSEISMQYESMNE------------FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYL  475 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (630)
                      |....+|..+....-..-.            .+.-+.+|++|++.       ++.....+..+-....+..+.++...-+
T Consensus        16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-------np~~~~L~l~~l~~~~~~~~~~~l~~~w   88 (321)
T PF08424_consen   16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-------NPDSERLLLGYLEEGEKVWDSEKLAKKW   88 (321)
T ss_pred             cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4555666666554433221            34455667777764       1122344455555566666777777778


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHH
Q 006812          476 ESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH----------HADSIEACQNLSKA  545 (630)
Q Consensus       476 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~  545 (630)
                      ++++..     .++.+..-..|...-......-.+......|.+++..........          ......++..+...
T Consensus        89 e~~l~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f  163 (321)
T PF08424_consen   89 EELLFK-----NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF  163 (321)
T ss_pred             HHHHHH-----CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence            877762     122333222222222222333468899999999988766554332          23344677788888


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHcCCCch-hHHHHHHHHHHHHHHH
Q 006812          546 YSSMGSYTLAIEFQQRAIDAWESHGPSAQ-DELREARRLLEQLKIK  590 (630)
Q Consensus       546 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~A~~~~~~~~~~  590 (630)
                      ....|-.+.|+..++-.+++---.++... ....+....|+...+.
T Consensus       164 l~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWeS  209 (321)
T PF08424_consen  164 LRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWES  209 (321)
T ss_pred             HHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhCc
Confidence            99999999999999999886443222211 1112566667666555

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.00  E-value=0.31  Score=25.78  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHH
Q 006812          496 IYNNLGAAYLELDRPQSAAQVFA  518 (630)
Q Consensus       496 ~~~~l~~~~~~~g~~~~A~~~~~  518 (630)
                      +...+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            56789999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.97  E-value=4.4  Score=38.45  Aligned_cols=109  Identities=10%  Similarity=0.101  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP  407 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  407 (630)
                      ...-.++..+|.-|...|+.+.|++.|-++-.... ........+.++..+-...|+|.....+..+|............
T Consensus       147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT-s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q  225 (466)
T KOG0686|consen  147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCT-SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ  225 (466)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc-chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence            34456677788888888888888888888544333 33344667777777777888888877777776655211000000


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRT  437 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  437 (630)
                      .-.+.....-|.+....++|..|..++-.+
T Consensus       226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            001122333444455566888888877654

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.90  E-value=0.8  Score=44.13  Aligned_cols=74  Identities=15%  Similarity=-0.064  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      ++..|.+++.-+|||..|++.++..---....+....+-...+++.+|-+|..+++|.+|+..|...+-...+.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567788999999999999887542211222223334455789999999999999999999999998666553

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.80  E-value=19  Score=35.97  Aligned_cols=78  Identities=15%  Similarity=0.095  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812          372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE  451 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  451 (630)
                      ...++..+.++|-.+.|+.....-                .....|   ..+.|+.+.|.+..++            ...
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rFeL---Al~lg~L~~A~~~a~~------------~~~  346 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDP----------------DHRFEL---ALQLGNLDIALEIAKE------------LDD  346 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-H----------------HHHHHH---HHHCT-HHHHHHHCCC------------CST
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCCh----------------HHHhHH---HHhcCCHHHHHHHHHh------------cCc
Confidence            445566666677666666543321                122222   3466777666544321            112


Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ...|..||.....+|+++-|.++|+++-+
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKAKD  375 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence            34777888888888888888887776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.77  E-value=6.1  Score=37.71  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=79.0

Q ss_pred             hhHHHhhccChHHHHHHHHHHHHHHhHhhhcC--CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEG--LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      =|..++++++|..|..-|..+++++.+..-..  ..+...|.......+.-.|..||..+++.+-|+....+.+.+    
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----  257 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----  257 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence            45667788899999999999988877644322  133344444455566778999999999999999998888743    


Q ss_pred             hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812          241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH  279 (630)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  279 (630)
                          +|....-+..-|.++....+|.+|-..+--+.=++
T Consensus       258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                34445556677888999999999987765554443

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.69  E-value=17  Score=35.11  Aligned_cols=124  Identities=17%  Similarity=0.068  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCC---ChhHHHHHHHhhHHHhhccC---hHHHHHHHHHHHHH
Q 006812          113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRP---SLLVAMCLQVMGSANYSFKR---FSDSLGYLSKANRM  186 (630)
Q Consensus       113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~  186 (630)
                      ..++..|..+.... .|++|+.++-.|-+.+..+  ...-   -...+..-..+-+||+.+.+   .++|..-+..+-+-
T Consensus       164 lg~hekaRa~m~re-~y~eAl~~LleADe~F~~C--d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg  240 (568)
T KOG2561|consen  164 LGLHEKARAAMERE-MYSEALLVLLEADESFSLC--DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG  240 (568)
T ss_pred             HhHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHhh--hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence            44556677777777 8999998888776665443  1000   00122222345677777665   45676666666555


Q ss_pred             HhHhhhcC-------CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          187 LGRLEEEG-------LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       187 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      +....+.+       ..+..|+ ...+...+..-|.+.+.+|+-++|.++++.+.......
T Consensus       241 f~~syGenl~Rl~~lKg~~spE-raL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el  300 (568)
T KOG2561|consen  241 FERSYGENLSRLRSLKGGQSPE-RALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL  300 (568)
T ss_pred             hhhhhhhhhHhhhhccCCCChh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence            55444433       1222333 23444667778999999999999999999988766554

>PF13041 PPR_2: PPR repeat family

Probab=90.68  E-value=1.1  Score=28.45  Aligned_cols=30  Identities=10%  Similarity=0.033  Sum_probs=27.0

Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ++.+|+.+-..|.+.|++++|.++|++..+
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            456889999999999999999999999886

>smart00101 14_3_3 14-3-3 homologues

Probab=90.59  E-value=12  Score=33.52  Aligned_cols=207  Identities=12%  Similarity=0.116  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHH-hhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILD-KKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      ..++.+....++|++...+..++.++.. ...      ...-.+.+..+|-. .|....+...+.. ++..+...+..  
T Consensus         5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL------t~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~--   75 (244)
T smart00101        5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL------TVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNE--   75 (244)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC------CHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCch--
Confidence            4466777778888888888887766421 111      11222333333322 3444444444443 22111111110  


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC--cc-HHHHHHHHHHHHHH-----cCC-----hhHHHHHH
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH--FG-VGYIYNNLGAAYLE-----LDR-----PQSAAQVF  517 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~-~~~~~~~l~~~~~~-----~g~-----~~~A~~~~  517 (630)
                         -...+..-|.. .=-++=..+...++.+....+-+..  +. .+..+-..|..|.-     .|+     .+.|...|
T Consensus        76 ---~~~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY  151 (244)
T smart00101       76 ---DHVASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY  151 (244)
T ss_pred             ---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence               01111111111 0012334455556666555443331  11 11122223333322     222     56899999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHhc
Q 006812          518 AFAKDIMDVSLGPHHADSIEACQNLSKA-YSSMGSYTLAIEFQQRAIDAWES-HGPSAQDELREARRLLEQLKIKAS  592 (630)
Q Consensus       518 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~  592 (630)
                      +.|.++....+.+.||.......+.+.. |.-+++.++|.+..++|+.-.-. +..-..+.+.++..+++.++....
T Consensus       152 ~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~  228 (244)
T smart00101      152 KSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLT  228 (244)
T ss_pred             HHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHH
Confidence            9999998888889999888777777655 45679999999888777754433 222234557777777777766543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.57  E-value=16  Score=36.52  Aligned_cols=130  Identities=14%  Similarity=-0.009  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812          210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE  289 (630)
Q Consensus       210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  289 (630)
                      ...++..+.++|..+.|+...+.             |   ..-+   .+..+.|+.+.|.+..++       .   +.  
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D-------------~---~~rF---eLAl~lg~L~~A~~~a~~-------~---~~--  346 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTD-------------P---DHRF---ELALQLGNLDIALEIAKE-------L---DD--  346 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS--------------H---HHHH---HHHHHCT-HHHHHHHCCC-------C---ST--
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCC-------------h---HHHh---HHHHhcCCHHHHHHHHHh-------c---Cc--
Confidence            44677788888888888776332             1   1222   234567787777655422       1   22  


Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812          290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                       ...|..||.....+|+++-|.++|.++-..              ..+..+|...|+.+.-.++...+...    ..   
T Consensus       347 -~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~lLy~~~g~~~~L~kl~~~a~~~----~~---  404 (443)
T PF04053_consen  347 -PEKWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLLLLYSSTGDREKLSKLAKIAEER----GD---  404 (443)
T ss_dssp             -HHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHHHHHHHCT-HHHHHHHHHHHHHT----T----
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccHHHHHHhCCHHHHHHHHHHHHHc----cC---
Confidence             246778899999999999999988874443              34566777777765544444443321    11   


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          370 LVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       370 ~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                        ++..-.++...|+.++....+.+
T Consensus       405 --~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  405 --INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             --HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCCHHHHHHHHHH
Confidence              11112334445666666665554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.57  E-value=26  Score=37.08  Aligned_cols=49  Identities=10%  Similarity=0.126  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          179 YLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       179 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      .|.-|+.+++....+.         .....+....|..++..|++++|...|-+++..
T Consensus       349 ly~~Ai~LAk~~~~d~---------d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  349 LYKVAINLAKSQHLDE---------DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             hHHHHHHHHHhcCCCH---------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            3455555655443222         345677778899999999999999999998743

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.55  E-value=2.4  Score=27.31  Aligned_cols=31  Identities=19%  Similarity=0.073  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                      +.++.+|..+.+.|+|++|..+.+.++++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP   32 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP   32 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence            3578899999999999999999999999755

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.30  E-value=10  Score=34.74  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCC
Q 006812          493 VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGP  571 (630)
Q Consensus       493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~  571 (630)
                      ...++..++..+...|+++.+++.+++.+.        .+|..-..|..+-..|...|+...|+..|++.-+.... +|.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi  223 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI  223 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence            345778899999999999999999999888        56777789999999999999999999999999886444 555


Q ss_pred             CchhHHHHHHHHHHHH
Q 006812          572 SAQDELREARRLLEQL  587 (630)
Q Consensus       572 ~~~~~~~~A~~~~~~~  587 (630)
                      +...   ++..+|.++
T Consensus       224 ~P~~---~~~~~y~~~  236 (280)
T COG3629         224 DPAP---ELRALYEEI  236 (280)
T ss_pred             CccH---HHHHHHHHH
Confidence            4322   345566665

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=90.29  E-value=14  Score=33.76  Aligned_cols=96  Identities=14%  Similarity=-0.028  Sum_probs=49.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812          215 NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK-EALPFGLKALEIHKKGLGHNSVEVAHD  293 (630)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~  293 (630)
                      ..+.+.|++.-|.+...-.++...+...+.+   ......+..+....+.-+ +-..+..++++.. + .+.........
T Consensus        18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~L   92 (260)
T PF04190_consen   18 LILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPEL   92 (260)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHH
T ss_pred             HHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHH
Confidence            3344555555555555444444443211111   122344555554444322 3455666777766 2 22333344567


Q ss_pred             HHHHHHHHhccccHHHHHHHHH
Q 006812          294 RRLLGVIYSGLEEHQKALEQNE  315 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~  315 (630)
                      +..+|..|++.|++.+|..+|-
T Consensus        93 H~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   93 HHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHH
Confidence            8889999999999999988774

; PDB: 3LKU_E 2WPV_G.

>PF12854 PPR_1: PPR repeat

Probab=90.29  E-value=0.62  Score=26.64  Aligned_cols=29  Identities=10%  Similarity=0.048  Sum_probs=25.6

Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                      .|+..+|..+...|.+.|+.++|.+++++
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            35667899999999999999999999875

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.11  E-value=8.6  Score=36.76  Aligned_cols=120  Identities=14%  Similarity=0.087  Sum_probs=79.8

Q ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC---c---cH----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKH---F---GV----GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                      =|..++++++|..|..-|..++++..+..--..   +   +.    ..+-..|..||.++++.+-|+..-.+.+.     
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~-----  256 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN-----  256 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh-----
Confidence            355677888888888888888887765421111   1   11    22345789999999999999999988877     


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812          528 LGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ  586 (630)
Q Consensus       528 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~  586 (630)
                         -+|....-+..-|.++..+.+|.+|..-+--+.-++.-.|.+ ...+.+-+++|-+
T Consensus       257 ---lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~-~q~~S~lIklyWq  311 (569)
T PF15015_consen  257 ---LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGS-EQRISKLIKLYWQ  311 (569)
T ss_pred             ---cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHhHHHHHHHHHH
Confidence               446555666677888888888888877666555444433322 2334445555544

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=90.00  E-value=10  Score=31.66  Aligned_cols=155  Identities=17%  Similarity=0.166  Sum_probs=83.2

Q ss_pred             ccHHHHH-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHH
Q 006812          383 EKFADAK-RCLEIACGILDKKETISPEEVADAYSEISMQYES-----MNEFETAISLLKRTLALLEKLPQAQHSEGSVSA  456 (630)
Q Consensus       383 ~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  456 (630)
                      |+|-+++ +-|+.|..++...-..+  ..+.+.+.+|..+..     .++...|+..+..+-+.       +  ......
T Consensus        41 gdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-------n--~~~aC~  109 (248)
T KOG4014|consen   41 GDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-------N--IPQACR  109 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-------C--CHHHHh
Confidence            3443433 35566666665443222  234556666665442     45688888888887652       1  223556


Q ss_pred             HHHHHHHHc-----CC--hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----------------------
Q 006812          457 RIGWLLLLT-----GK--VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL----------------------  507 (630)
Q Consensus       457 ~la~~~~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------  507 (630)
                      .+|.+++..     ++  ..+|++++.++.++          ....+.+.|...|..-                      
T Consensus       110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~  179 (248)
T KOG4014|consen  110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGS  179 (248)
T ss_pred             hhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhh
Confidence            677766542     22  56788888877662          1222344444444322                      


Q ss_pred             --CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHH
Q 006812          508 --DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM----GSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       508 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~  568 (630)
                        .+.+.|..+-.+|-++       .+|   .+..++.+.|..-    .+.++|..+-.+|.++.+.
T Consensus       180 ~~kDMdka~qfa~kACel-------~~~---~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e  236 (248)
T KOG4014|consen  180 LSKDMDKALQFAIKACEL-------DIP---QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEE  236 (248)
T ss_pred             hhHhHHHHHHHHHHHHhc-------CCh---HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHH
Confidence              3344444444444432       223   5666666666432    3456666666666666655

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=89.83  E-value=0.69  Score=44.29  Aligned_cols=72  Identities=19%  Similarity=0.307  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006812          476 ESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS  547 (630)
Q Consensus       476 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  547 (630)
                      -+++-+.+.++|+.||++.......|-+|..+|+++..++.++-|+++.++.+.|-.|.+...+...+.++.
T Consensus       319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS  390 (615)
T KOG0508|consen  319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS  390 (615)
T ss_pred             HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence            356677788899999998877778899999999999999999999999999999999998888888877763

>PF13041 PPR_2: PPR repeat family

Probab=88.99  E-value=2.2  Score=26.97  Aligned_cols=45  Identities=18%  Similarity=0.187  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL  462 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  462 (630)
                      .+|+.+-..|.+.|++++|.++|++..+      ..-.|+..++..+-..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~------~g~~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK------RGIKPDSYTYNILINGL   48 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHH
Confidence            5788889999999999999999999886      23445556666555443

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=88.92  E-value=14  Score=42.58  Aligned_cols=191  Identities=14%  Similarity=0.015  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHHh--
Q 006812          206 MHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP---FGLKALEIHK--  280 (630)
Q Consensus       206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~--  280 (630)
                      ..+..-.+|..+...|.+.+|+..|..|+++.+..  .|+-..+.++-.++.+..-.+....-..   ..........  
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~  318 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST  318 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence            34566679999999999999999999999999886  7888888888888776654433221110   0000000000  


Q ss_pred             -----hhcC---CCCHHHH----------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006812          281 -----KGLG---HNSVEVA----------HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI  342 (630)
Q Consensus       281 -----~~~~---~~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  342 (630)
                           ....   ...|...          ....++.  ..-...+++++.+|.++...........-..++....+.++.
T Consensus       319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~--~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~  396 (1185)
T PF08626_consen  319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLP--NLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV  396 (1185)
T ss_pred             CccCcccCCccCCCCCCccccCCCccccchhhccCH--hhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence                 0000   0000000          0000111  111234677888887765443332222334566666777777


Q ss_pred             HcC--------------------CHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812          343 ALG--------------------KFEEAINTLKGVVRQTEK--ESETRALVFISMGKALCNQEKFADAKRCLEIACGILD  400 (630)
Q Consensus       343 ~~g--------------------~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  400 (630)
                      ...                    .-.++..+..+++...-.  ...+....|..+|.+|...|-..++.-+++.++...-
T Consensus       397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~  476 (1185)
T PF08626_consen  397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV  476 (1185)
T ss_pred             HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence            666                    677777788777764432  2345577899999999999998888777777766553

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF12854 PPR_1: PPR repeat

Probab=88.20  E-value=1.1  Score=25.55  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812          537 EACQNLSKAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       537 ~~~~~la~~~~~~g~~~~A~~~~~~a  562 (630)
                      .+|..|...|.+.|+.++|.+++++.
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            48999999999999999999998863

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.08  E-value=14  Score=30.85  Aligned_cols=136  Identities=18%  Similarity=0.200  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhCCCCCCchhHHHHHHHHHHHH-----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-
Q 006812          434 LKRTLALLEKLPQAQHSEGSVSARIGWLLLL-----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL-  507 (630)
Q Consensus       434 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  507 (630)
                      |++|..+++..-++ .......+.+|..++.     .++...|++.+..+.+          .....+..++|.++..- 
T Consensus        51 F~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~----------~n~~~aC~~~gLl~~~g~  119 (248)
T KOG4014|consen   51 FQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD----------ANIPQACRYLGLLHWNGE  119 (248)
T ss_pred             HHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc----------cCCHHHHhhhhhhhccCc
Confidence            44444444444322 2233456666665543     4567888888888776          22334666777777643 


Q ss_pred             ----CC--hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc------------------------CCHHHHHH
Q 006812          508 ----DR--PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM------------------------GSYTLAIE  557 (630)
Q Consensus       508 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------g~~~~A~~  557 (630)
                          ++  .++|.+++.++-++          ....+.+.|...|..-                        .+.+.|.+
T Consensus       120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q  189 (248)
T KOG4014|consen  120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ  189 (248)
T ss_pred             CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence                22  67888888888653          2224555555555433                        56688888


Q ss_pred             HHHHHHHH-----------HHHcCCCchhHHHHHHHHHHHHHHH
Q 006812          558 FQQRAIDA-----------WESHGPSAQDELREARRLLEQLKIK  590 (630)
Q Consensus       558 ~~~~al~~-----------~~~~~~~~~~~~~~A~~~~~~~~~~  590 (630)
                      +--+|.++           .-.+|+..+.+..+|..+-.++.+.
T Consensus       190 fa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  190 FAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             HHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            88777643           2236666667777777766665444

>smart00101 14_3_3 14-3-3 homologues

Probab=87.91  E-value=20  Score=32.25  Aligned_cols=180  Identities=17%  Similarity=0.099  Sum_probs=93.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVRQT-EKESETRALVFISMGKALCN-QEKFADAKRCLEIACGILDKKETISPEEVAD  412 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  412 (630)
                      ..+|.+..+.++|++.+...+++++.. +..  ....-.+.+..+|.. .|....+...+.. ++......+  ....  
T Consensus         5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~e--Lt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~--~~~~--   77 (244)
T smart00101        5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEE--LTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG--NEDH--   77 (244)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCCcc--CCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccC--chHH--
Confidence            346677777888888888888877642 111  111122333333332 3444444444333 111111111  0000  


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC--chhHH--HHHHHHHHHH-----cCC-----hhhHHHHHHHH
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH--SEGSV--SARIGWLLLL-----TGK-----VPQAIPYLESA  478 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~--~~~la~~~~~-----~g~-----~~~A~~~~~~a  478 (630)
                        ..+..-|. ..=-++=.......+.+.....-+..  +...+  +-..|..|.-     .|+     .++|...|+.|
T Consensus        78 --~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A  154 (244)
T smart00101       78 --VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSA  154 (244)
T ss_pred             --HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence              01111111 01112334455566666544432221  12222  2334444432     222     45889999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHH
Q 006812          479 AERLKESFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       479 l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~  524 (630)
                      .++....+.+.||-......+.+..|+. +++.++|....++|.+-.
T Consensus       155 ~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      155 QDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9998887888899777766677666655 699999998888877643

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=87.71  E-value=10  Score=36.80  Aligned_cols=142  Identities=16%  Similarity=0.145  Sum_probs=91.0

Q ss_pred             HHHHHHHhhHHHhhc-cChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHH----HHHHHHHcCCHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSF-KRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLE----LANVKTAMGRREEALEHL  230 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~  230 (630)
                      ...++-.+|..|... .+.-.|..++.++++....-.+..+.+..+  .|..+.-+..    ....-.-.++.++   .-
T Consensus       244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~--~p~~ay~~~re~~~~~elE~lv~D~d~---~R  318 (615)
T KOG0508|consen  244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL--EPVLAYGYGREVNNREELEELVEDPDE---MR  318 (615)
T ss_pred             HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC--CchhhhhhhhhcCCHHHHHHHhcChHH---HH
Confidence            345666677776543 346778899999988755511111111111  2222211111    1111111222221   12


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 006812          231 QKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS  302 (630)
Q Consensus       231 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  302 (630)
                      -+++-+.+.++++.+|++.......|-+|...|+++..++++.-|+++.++.+.+-++..+..+...+.++.
T Consensus       319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS  390 (615)
T KOG0508|consen  319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS  390 (615)
T ss_pred             HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence            346667788899999988877778899999999999999999999999999888888888777777666654

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.69  E-value=6.8  Score=27.76  Aligned_cols=53  Identities=15%  Similarity=0.175  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-c--C---CCchhHHHHHHHHHHHHHHHh
Q 006812          539 CQNLSKAYSSMGSYTLAIEFQQRAIDAWES-H--G---PSAQDELREARRLLEQLKIKA  591 (630)
Q Consensus       539 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~---~~~~~~~~~A~~~~~~~~~~~  591 (630)
                      +.+.|..+...|+.++|+.+|++++..... +  .   ......+++|..+-++|....
T Consensus        11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~   69 (79)
T cd02679          11 EISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNL   69 (79)
T ss_pred             HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence            344455566779999999999999998877 2  1   124467899999999887653

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.45  E-value=24  Score=32.60  Aligned_cols=111  Identities=10%  Similarity=-0.000  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812          247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL  326 (630)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  326 (630)
                      .++.+...||.+|...++|..|-..+.- +.........+.......+..+|.+|...++..+|..+..++--+.....+
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N  179 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN  179 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence            4567788999999999999998776532 111110001122244566788999999999999999998887665544433


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVV  358 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  358 (630)
                      +.-........|.+.-..++|-+|...|.+..
T Consensus       180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444455777777788877776666544

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.17  E-value=53  Score=36.34  Aligned_cols=72  Identities=10%  Similarity=0.034  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK  281 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  281 (630)
                      ++.+..|.....+-.-..--..|.+|+..++...  +.+...--|...|.+|...|+|++-++.+.-|++.+++
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (932)
T PRK13184        513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQ  584 (932)
T ss_pred             HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            5566777776654333322355666666666553  33433445777889999999999999999999988773

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.85  E-value=11  Score=30.49  Aligned_cols=87  Identities=16%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP  488 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (630)
                      .+...+..+...-...++.+++...+...--+.+     ..+  .+-..-|.++...|+|.+|+..++...+        
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP-----~~~--e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------   72 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRP-----NLK--ELDMFDGWLLIARGNYDEAARILRELLS--------   72 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----Ccc--ccchhHHHHHHHcCCHHHHHHHHHhhhc--------
Confidence            3445555555556668899998888776544422     222  2445678899999999999999998776        


Q ss_pred             CCccHHHHHHHHHHHHHHcCCh
Q 006812          489 KHFGVGYIYNNLGAAYLELDRP  510 (630)
Q Consensus       489 ~~~~~~~~~~~l~~~~~~~g~~  510 (630)
                      ..+.....--.++.|+..+|+.
T Consensus        73 ~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        73 SAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             cCCCchHHHHHHHHHHHhcCCh
Confidence            2233344445667777777764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.76  E-value=47  Score=35.30  Aligned_cols=50  Identities=16%  Similarity=0.180  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812          313 QNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       313 ~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  362 (630)
                      .|.-|+.+++..+.+ ..........|.-++..|++++|...|-+.+...+
T Consensus       349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le  399 (933)
T KOG2114|consen  349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE  399 (933)
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence            455566677776666 44566777889999999999999999999886543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.58  E-value=8.9  Score=34.76  Aligned_cols=72  Identities=24%  Similarity=0.312  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCCch
Q 006812          496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQ  574 (630)
Q Consensus       496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~  574 (630)
                      .+...+..|...|.+.+|+++.++++.        -+|-.-..+..|-.++..+|+--.|...|++.-+..+. +|-+..
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd  352 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD  352 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence            445667889999999999999999998        45666788899999999999999999999998877666 665443


Q ss_pred             h
Q 006812          575 D  575 (630)
Q Consensus       575 ~  575 (630)
                      +
T Consensus       353 d  353 (361)
T COG3947         353 D  353 (361)
T ss_pred             h
Confidence            3

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=86.51  E-value=31  Score=32.93  Aligned_cols=124  Identities=14%  Similarity=-0.011  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc
Q 006812          224 EEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG  303 (630)
Q Consensus       224 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  303 (630)
                      +.-+.+|++|++..     ++++   ..+..+-.......+.++...-+++++...+     +.+.+...|...-.....
T Consensus        48 E~klsilerAL~~n-----p~~~---~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-----~~~~LW~~yL~~~q~~~~  114 (321)
T PF08424_consen   48 ERKLSILERALKHN-----PDSE---RLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-----GSPELWREYLDFRQSNFA  114 (321)
T ss_pred             HHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHhc
Confidence            44556666666441     3333   3333334444556677777777888777533     455666655555555555


Q ss_pred             cccHHHHHHHHHHHHHHHHHcCCC------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          304 LEEHQKALEQNELSQKVLKTWGLS------------SELLRAEIDAANMQIALGKFEEAINTLKGVVRQ  360 (630)
Q Consensus       304 ~g~~~~A~~~~~~a~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  360 (630)
                      .-.+......|.+++..+......            .....++..++......|..+.|+..++-.++.
T Consensus       115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence            667888899999988876554222            234455556666666777777777777766664

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.48  E-value=13  Score=35.80  Aligned_cols=133  Identities=21%  Similarity=0.099  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHH
Q 006812          205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE---EDSRELGVANRDLAEAFVAVLNF---KEALPFGLKALEI  278 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~  278 (630)
                      .++..++..|.+......|++|+.++-.|-+.+...-.   ..-...+..-..+-+||+...+.   ..|..-+..+-+-
T Consensus       161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg  240 (568)
T KOG2561|consen  161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG  240 (568)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence            34556677888888999999999888777655432100   11112233344556777766543   3444443333333


Q ss_pred             Hhhh-----------cCCCCHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 006812          279 HKKG-----------LGHNSVEVA---HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA  337 (630)
Q Consensus       279 ~~~~-----------~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  337 (630)
                      +...           .+...|+.+   ..+..-|.+.+.+|+-++|.++++.+...+..+..+.........+
T Consensus       241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~m  313 (568)
T KOG2561|consen  241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGM  313 (568)
T ss_pred             hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHc
Confidence            2222           234445433   4445568889999999999999999888877776665544444433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=86.44  E-value=5.2  Score=29.36  Aligned_cols=34  Identities=12%  Similarity=-0.144  Sum_probs=25.4

Q ss_pred             CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      .+|....+.+.+|..+...|++++|++.+-.++.
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~   50 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVR   50 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3566777888888888888888888888877665

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=86.24  E-value=41  Score=34.16  Aligned_cols=384  Identities=10%  Similarity=-0.050  Sum_probs=200.6

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      |..-..|-..+..-+..| ..+.+++.|++++.-.+-.         ...-...+..+--..|+.+.-...|++|.....
T Consensus        76 Pl~~gyW~kfA~~E~klg-~~~~s~~Vfergv~aip~S---------vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG  145 (577)
T KOG1258|consen   76 PLCYGYWKKFADYEYKLG-NAENSVKVFERGVQAIPLS---------VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVG  145 (577)
T ss_pred             ccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhH---------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcc
Confidence            667778888888888888 9999999999999877432         111122233334466777777777777777632


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHH
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA  268 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  268 (630)
                      .-.-..             ..+-..-..-..++++..-...|++.+++-...+        ..++..=.-+.+. +-..-
T Consensus       146 ~dF~S~-------------~lWdkyie~en~qks~k~v~~iyeRileiP~~~~--------~~~f~~f~~~l~~-~~~~~  203 (577)
T KOG1258|consen  146 LDFLSD-------------PLWDKYIEFENGQKSWKRVANIYERILEIPLHQL--------NRHFDRFKQLLNQ-NEEKI  203 (577)
T ss_pred             cchhcc-------------HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh--------HHHHHHHHHHHhc-CChhh
Confidence            211111             2222333333566777777777777765432211        0011000000000 00111


Q ss_pred             HHHHHHHHHHHhhhcCC----CCHHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 006812          269 LPFGLKALEIHKKGLGH----NSVEVAHDR-RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA  343 (630)
Q Consensus       269 ~~~~~~al~~~~~~~~~----~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  343 (630)
                      +-..++++++.......    ........+ ..+-.+-...+.++++.....+...+                .=.++..
T Consensus       204 l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~----------------~~~~~~~  267 (577)
T KOG1258|consen  204 LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI----------------HEKVYQK  267 (577)
T ss_pred             hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH----------------HHHHHHh
Confidence            11111222111110000    000000000 00000111111122222111111111                1112222


Q ss_pred             cCCHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 006812          344 LGKFEEAINTLKGVVRQTE----KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM  419 (630)
Q Consensus       344 ~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  419 (630)
                      .....+.+..++..+...-    .........|......-...|+++.....+++++--+        ......|...+.
T Consensus       268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~  339 (577)
T KOG1258|consen  268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYAR  339 (577)
T ss_pred             hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHH
Confidence            3333444444444443211    1122224456666677778899999988888887665        345578888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812          420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN  499 (630)
Q Consensus       420 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  499 (630)
                      .....|+.+-|...+..+.++....    .  ..+...-+..-...|++..|...+++..+        ..|....+-..
T Consensus       340 ~m~~~~~~~~~~~~~~~~~~i~~k~----~--~~i~L~~a~f~e~~~n~~~A~~~lq~i~~--------e~pg~v~~~l~  405 (577)
T KOG1258|consen  340 WMESSGDVSLANNVLARACKIHVKK----T--PIIHLLEARFEESNGNFDDAKVILQRIES--------EYPGLVEVVLR  405 (577)
T ss_pred             HHHHcCchhHHHHHHHhhhhhcCCC----C--cHHHHHHHHHHHhhccHHHHHHHHHHHHh--------hCCchhhhHHH
Confidence            8888899998888888887764322    1  23445556667778999999999998877        23666655556


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHH-HHhcCCHHHHHHHHHHHHHH
Q 006812          500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSI-EACQNLSKA-YSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~-~~~~g~~~~A~~~~~~al~~  565 (630)
                      -.....++|+.+.+.. +.......  .-|..++... ..+...++. +.-.++.+.|...+.+++++
T Consensus       406 ~~~~e~r~~~~~~~~~-~~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~  470 (577)
T KOG1258|consen  406 KINWERRKGNLEDANY-KNELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI  470 (577)
T ss_pred             HHhHHHHhcchhhhhH-HHHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            6667778888888874 22222211  1122333332 344455544 45677888999888888755

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.21  E-value=3  Score=40.35  Aligned_cols=74  Identities=22%  Similarity=0.116  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                      +...|.+++.-.|+|..|++.++..---....+....+....+++.+|-+|..+++|.+|++.|...+....+.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567888999999999999876532111112222344556688999999999999999999999988765443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.20  E-value=9.1  Score=35.04  Aligned_cols=72  Identities=22%  Similarity=0.196  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      .++..++..+...|+++.+++.+++.+.        .+|..-..+..+-..|...|+...|+..|++......+-+|...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P  225 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP  225 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence            4778899999999999999999999887        45666778889999999999999999999999887666666443

>PRK10941 hypothetical protein; Provisional

Probab=86.18  E-value=5.4  Score=36.51  Aligned_cols=72  Identities=15%  Similarity=0.010  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                      -+...+.++-.+|...++++.|+.+.+..+.+      .|+...-+...|.+|.++|.+..|..-++..++..+.++.
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            34566778888999999999999999888877      6777777788899999999999999999999888776554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.78  E-value=9.9  Score=30.72  Aligned_cols=87  Identities=15%  Similarity=0.012  Sum_probs=55.3

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      +...+..+...-...++.+++...+...--+         .       |.....-..-|.++...|+|.+|+..++... 
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL---------r-------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~-   71 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL---------R-------PNLKELDMFDGWLLIARGNYDEAARILRELL-   71 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------C-------CCccccchhHHHHHHHcCCHHHHHHHHHhhh-
Confidence            3444555555566688888888877655444         2       2223334457889999999999999998855 


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFK  266 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (630)
                             .+.+.....--.++.|+...|+.+
T Consensus        72 -------~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        72 -------SSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             -------ccCCCchHHHHHHHHHHHhcCChH
Confidence                   222222344445667777666643

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=85.53  E-value=33  Score=34.58  Aligned_cols=73  Identities=16%  Similarity=0.066  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHH--cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812          496 IYNNLGAAYLE--LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       496 ~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                      ++.+||.+-.-  ...-..++++|.+|+...+..++..|.   --|..+|-.|.+.+++.+|+..+-+|-.+...+..
T Consensus       279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY  353 (618)
T PF05053_consen  279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNY  353 (618)
T ss_dssp             HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB-
T ss_pred             hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            34444444332  233566789999999999888876543   46778899999999999999999999999888544

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=84.86  E-value=13  Score=27.26  Aligned_cols=37  Identities=30%  Similarity=0.459  Sum_probs=28.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                      +|....+.+.+|..+...|++++|++.+-.++...+.
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            6777888889999999999999999888888775443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.77  E-value=3.7  Score=25.17  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=18.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVR  359 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~  359 (630)
                      ..+|..|...|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4577777788888888888877774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=84.01  E-value=33  Score=31.19  Aligned_cols=132  Identities=13%  Similarity=0.114  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhcc
Q 006812          307 HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEK  384 (630)
Q Consensus       307 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~  384 (630)
                      -++-++-+++.++-.+..+-......++.++|..|.+.++.+.+.+++.+.++..-..  ..+....-..||.+|..+.-
T Consensus        91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~v  170 (412)
T COG5187          91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKV  170 (412)
T ss_pred             hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHH
Confidence            3444555555555555444456778899999999999999999999999988754332  22334455566777665554


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK  443 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  443 (630)
                      .++.++   .+-.+.++....+......+  ..|.......++.+|-.++...+..+..
T Consensus       171 V~e~lE---~~~~~iEkGgDWeRrNRyK~--Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         171 VEESLE---VADDIIEKGGDWERRNRYKV--YKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HHHHHH---HHHHHHHhCCCHHhhhhHHH--HHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence            444444   34444444332222222233  3455666777888888888877765443

>PRK10941 hypothetical protein; Provisional

Probab=83.99  E-value=13  Score=34.15  Aligned_cols=67  Identities=12%  Similarity=0.002  Sum_probs=54.4

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      .+...+.++-.+|...++++.|+.+.+..+.+         .|+.       ..-+...|.+|.++|.+..|..-++.-+
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l---------~P~d-------p~e~RDRGll~~qL~c~~~A~~DL~~fl  242 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF---------DPED-------PYEIRDRGLIYAQLDCEHVALSDLSYFV  242 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh---------CCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            45567788899999999999999999999998         2222       2334468999999999999999999887


Q ss_pred             HHH
Q 006812          235 EIK  237 (630)
Q Consensus       235 ~~~  237 (630)
                      +.+
T Consensus       243 ~~~  245 (269)
T PRK10941        243 EQC  245 (269)
T ss_pred             HhC
Confidence            655

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.82  E-value=52  Score=33.31  Aligned_cols=175  Identities=11%  Similarity=-0.017  Sum_probs=102.2

Q ss_pred             HhcCHHHHHHHHHHHHHHHhhh----cCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---------
Q 006812          261 AVLNFKEALPFGLKALEIHKKG----LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---------  327 (630)
Q Consensus       261 ~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------  327 (630)
                      ....|++|...|.-+.....-.    .-..+|.....+..++.++..+|+.+-|....++++-.+...-..         
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            3456778888888777655421    011356667788899999999999999999999988776552100         


Q ss_pred             ------hhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812          328 ------SEL---LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI  398 (630)
Q Consensus       328 ------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  398 (630)
                            +..   ..+++..-......|-+..|.++++-.+...+..+|.-  +.+.+-....+..+|.=-+..++.....
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~--~l~~ID~~ALrareYqwiI~~~~~~e~~  407 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG--ILYLIDIYALRAREYQWIIELSNEPENM  407 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh--HHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence                  111   12223334455678999999999999998877644421  1222222223344454444444443222


Q ss_pred             HHhhcCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q 006812          399 LDKKETISPEEVADAYSEISMQYESMNE---FETAISLLKRTLALL  441 (630)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~  441 (630)
                      ..-..-   |... .-..+|..|.....   -..|...+.+|+.+.
T Consensus       408 n~l~~~---PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~  449 (665)
T KOG2422|consen  408 NKLSQL---PNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHH  449 (665)
T ss_pred             ccHhhc---CCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence            111111   1111 12345666666555   567888888887763

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.62  E-value=37  Score=31.42  Aligned_cols=109  Identities=11%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK---ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET  404 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  404 (630)
                      .........+|.+|...++|..|-..+.-.-...+.   +.......+..+|.+|...++..+|..+..++--.....  
T Consensus       100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~--  177 (399)
T KOG1497|consen  100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES--  177 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence            345667778899999999998887776543221111   223346677889999999999999998888765443322  


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTL  438 (630)
Q Consensus       405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  438 (630)
                      .++.-....-...|+++-..++|-+|...|-+..
T Consensus       178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222223333455677777778877776665543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.10  E-value=14  Score=33.54  Aligned_cols=75  Identities=21%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      .+...+..|...|.+.+|+++.++++.        -+|-.-..+..+-.++...|+--.|...|++.-+.....+|-+-.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd  352 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD  352 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence            345567789999999999999999998        356666778888999999999999999999988888777775544


Q ss_pred             HHH
Q 006812          534 DSI  536 (630)
Q Consensus       534 ~~~  536 (630)
                      +..
T Consensus       353 dsi  355 (361)
T COG3947         353 DSI  355 (361)
T ss_pred             hhH
Confidence            433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=83.01  E-value=84  Score=35.07  Aligned_cols=22  Identities=18%  Similarity=0.150  Sum_probs=10.5

Q ss_pred             HHHHHHHHcCChhHHHHHHHHH
Q 006812          499 NLGAAYLELDRPQSAAQVFAFA  520 (630)
Q Consensus       499 ~l~~~~~~~g~~~~A~~~~~~a  520 (630)
                      .|+.-+..++++-+|.....+.
T Consensus      1004 ~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHHHHHHcccchhHHHHHHHH
Confidence            3444444555555554444443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.86  E-value=50  Score=32.36  Aligned_cols=139  Identities=14%  Similarity=0.034  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHH--HHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARI--GWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      .....+.-.+..++|..|...+......   +.+...  ...+..+  |..++..-++.+|.+.++..+......     
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l-----  202 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL-----  202 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----
Confidence            3344566677899999999999987763   222221  3344444  445567889999999999887632110     


Q ss_pred             ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      ......+..+..+..       +...+.............-.+.....+..-|.--...|+|+.|...+-+++++.-+
T Consensus       203 ~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q  273 (379)
T PF09670_consen  203 NQEREGLKELVEVLK-------ALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ  273 (379)
T ss_pred             HhHHHHHHHHHHHHH-------HHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            011112222222221       11112111111111000001222233333344445689999999999999887654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=82.81  E-value=2.4  Score=23.14  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          538 ACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       538 ~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      +|..+-..|.+.|++++|.+.|++..+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            467788899999999999999988754

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.22  E-value=5.1  Score=37.43  Aligned_cols=66  Identities=15%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQ  560 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  560 (630)
                      .-+...|.-.+.++++++|...|..|..+..+.+|..+.+...+++..|..+...++.+.+.-..-
T Consensus        42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na  107 (400)
T KOG4563|consen   42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA  107 (400)
T ss_pred             HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            345678889999999999999999999999999999999999999999999999988877664443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=80.51  E-value=83  Score=33.33  Aligned_cols=19  Identities=32%  Similarity=0.331  Sum_probs=12.9

Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q 006812          214 ANVKTAMGRREEALEHLQK  232 (630)
Q Consensus       214 ~~~~~~~g~~~~A~~~~~~  232 (630)
                      ..++.-.|+|+.|+.++-+
T Consensus       265 f~~LlLtgqFE~AI~~L~~  283 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR  283 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHh
Confidence            4556677888888887665

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=80.47  E-value=16  Score=28.90  Aligned_cols=70  Identities=9%  Similarity=-0.012  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812          291 AHDRRLLGVIYSGLEE---HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE  364 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  364 (630)
                      ..+.++++.+.....+   ..+.+..++..++    ...+...-...+.|+..+++.++|+.++.+.+..++.-+++
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence            3456677777766544   4455555554333    12234455667778888899999999999998888765444

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.37  E-value=71  Score=32.45  Aligned_cols=169  Identities=14%  Similarity=0.073  Sum_probs=98.1

Q ss_pred             cccHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-------------
Q 006812          304 LEEHQKALEQNELSQKVLKT------WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE-------------  364 (630)
Q Consensus       304 ~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------------  364 (630)
                      ...|++|...|.-+.....-      +...|..+..+..++.+...+|+.+-|..+..+++=.....             
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45577888877777666433      23347788999999999999999999999999887544320             


Q ss_pred             ----ch---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 006812          365 ----SE---TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY-ESMNEFETAISLLKR  436 (630)
Q Consensus       365 ----~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~  436 (630)
                          .+   ....+++..-..+.+.|-+..|.++++-.+++....   ++    .+...+..+| .+..+|.=-++.++.
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e---DP----l~~l~~ID~~ALrareYqwiI~~~~~  403 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE---DP----LGILYLIDIYALRAREYQWIIELSNE  403 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC---Cc----hhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence                01   112233333455667788888988888776654221   22    2222222222 334444444444443


Q ss_pred             HHHHHHhCCCCCCchhHHHHHHHHHHHHcCC---hhhHHHHHHHHHHHH
Q 006812          437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGK---VPQAIPYLESAAERL  482 (630)
Q Consensus       437 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~  482 (630)
                      .-.. .+.  ...|....-..++..|.....   -+.|...+.+|+.+.
T Consensus       404 ~e~~-n~l--~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~  449 (665)
T KOG2422|consen  404 PENM-NKL--SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHH  449 (665)
T ss_pred             HHhh-ccH--hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence            3221 111  011222223566777776655   567888888888743

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.34  E-value=17  Score=25.41  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhh
Q 006812          110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDER  148 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~  148 (630)
                      +.+..+...+..+-..| ++++|+.+|+++++.+.....
T Consensus         4 ~~A~~~a~~AVe~D~~g-r~~eAi~~Y~~aIe~L~q~~~   41 (75)
T cd02682           4 EMARKYAINAVKAEKEG-NAEDAITNYKKAIEVLSQIVK   41 (75)
T ss_pred             HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence            34566777787778887 999999999999998877643

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	630
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-27
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-27
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-26
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-25
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-22
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-17
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-21
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-18
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-18
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	5e-16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-11
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	7e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	6e-08
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	6e-08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	4e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	6e-07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	2e-06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	9e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	6e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-04

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  113 bits (286), Expect = 2e-27
 Identities = 56/402 (13%), Positives = 119/402 (29%), Gaps = 44/402 (10%)

Query: 163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR 222
              ++                ++     +              M              G 
Sbjct: 14  ENVSSLGLGSGGGGTNSHDGNSQQGSGSDG----------GSSMCLELALEGERLCNAGD 63

Query: 223 REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282
               +   Q  ++       ED R L      L  A+  + ++ +A+ +    L + K  
Sbjct: 64  CRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119

Query: 283 LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI 342
                   +     LG     +    +A    E    + +  G      RA  +  N+  
Sbjct: 120 NDRLGEAKSSGN--LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177

Query: 343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK 402
           A GK     N  K      E  +           +A+   ++       L++   + D+ 
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALT-----------RAVEFYQE------NLKLMRDLGDRG 220

Query: 403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL 462
                     A   +   Y  + +F+ AI   +  L +  +    + +E   ++ +G   
Sbjct: 221 A------QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSH 273

Query: 463 LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522
           +  G+   A  + +     L    G +         +LG  Y  L    +A +       
Sbjct: 274 IFLGQFEDAAEHYKRTLA-LAVELGERE-VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331

Query: 523 IMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
           I    LG        AC +L  A+S++G +  A+++ ++ + 
Sbjct: 332 IA-QELG-DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  111 bits (281), Expect = 3e-27
 Identities = 51/362 (14%), Positives = 113/362 (31%), Gaps = 39/362 (10%)

Query: 213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272
                   G     +   +  +++      ED + L      L  A+  + ++ +AL + 
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66

Query: 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR 332
              L + +          A     LG     L    +A+   +    + +         R
Sbjct: 67  HHDLTLARTIGDQLGEAKASGN--LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124

Query: 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL 392
           A  +  N+  A GK               +  +  +         A+   E+       L
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ--------AAVDLYEE------NL 170

Query: 393 EIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG 452
            +   + D+           A+  +   +  +  F  A+   ++ L + ++    + +E 
Sbjct: 171 SLVTALGDRAA------QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAER 223

Query: 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS 512
              + +G   +  G+   A  Y +     L                +LG  Y  L   + 
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLL-LARQLK-DRAVEAQSCYSLGNTYTLLQDYEK 281

Query: 513 AAQVF----AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568
           A        A A+++ D            AC +L  AY+++G++  A+ F ++ ++    
Sbjct: 282 AIDYHLKHLAIAQELKD------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

Query: 569 HG 570
            G
Sbjct: 336 VG 337

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  109 bits (275), Expect = 6e-26
 Identities = 78/427 (18%), Positives = 135/427 (31%), Gaps = 58/427 (13%)

Query: 150 NRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAV 209
           +  +    + L + G            + +   A ++              +    + A+
Sbjct: 4   SMEA--SCLELALEGERLCKSGDCRAGVSFFEAAVQVG------------TEDLKTLSAI 49

Query: 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEAL 269
           + +L N    +    +ALE+    L +   I   D      A+ +L      + NF EA+
Sbjct: 50  YSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAI 107

Query: 270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329
               + L+I ++         A     LG +Y    +        ++ +   +       
Sbjct: 108 VCCQRHLDISRELNDKVGEARALYN--LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165

Query: 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA- 388
                        A+  +EE ++    +V      +      F ++G        F DA 
Sbjct: 166 -------------AVDFYEENLS----LVTALGDRAAQ-GRAFGNLGNTHYLLGNFRDAV 207

Query: 389 ---KRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445
              ++ L IA    DK           AYS +   Y  + EFETA    K+TL L  +L 
Sbjct: 208 IAHEQRLLIAKEFGDKA------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261

Query: 446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESA---AERLKESFGPKHFGVGYIYNNLGA 502
             +  E      +G    L     +AI Y       A+ L +       G G    +LG 
Sbjct: 262 D-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-----RIGEGRACWSLGN 315

Query: 503 AYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG-SYTLAIEFQQR 561
           AY  L     A        +I    +G    +   A  NLS     +G SY+        
Sbjct: 316 AYTALGNHDQAMHFAEKHLEISR-EVGDKSGEL-TARLNLSDLQMVLGLSYSTNNSIMSE 373

Query: 562 AIDAWES 568
             +   S
Sbjct: 374 NTEIDSS 380

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  108 bits (272), Expect = 1e-25
 Identities = 52/362 (14%), Positives = 112/362 (30%), Gaps = 39/362 (10%)

Query: 213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272
                   G     +   +  +++      ED + L      L  A+  + ++ +AL + 
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70

Query: 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR 332
              L + +          A     LG     L    +A+   +    + +         R
Sbjct: 71  HHDLTLARTIGDQLGEAKASGN--LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128

Query: 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL 392
           A  +  N+  A GK               E     +         A+   E+       L
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ--------AAVDFYEE------NL 174

Query: 393 EIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG 452
            +   + D+           A+  +   +  +  F  A+   ++ L + ++    + +E 
Sbjct: 175 SLVTALGDRAA------QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAER 227

Query: 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS 512
              + +G   +  G+   A  Y +     L                +LG  Y  L   + 
Sbjct: 228 RAYSNLGNAYIFLGEFETASEYYKKTLL-LARQLK-DRAVEAQSCYSLGNTYTLLQDYEK 285

Query: 513 AAQVF----AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568
           A        A A+++ D            AC +L  AY+++G++  A+ F ++ ++    
Sbjct: 286 AIDYHLKHLAIAQELND------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339

Query: 569 HG 570
            G
Sbjct: 340 VG 341

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 445 PQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY 504
           P +  +     A  G  L  +G     + + E+A +   E        +  IY+ LG AY
Sbjct: 2   PGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED----LKTLSAIYSQLGNAY 57

Query: 505 LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
             L     A +       +   ++G    ++ +A  NL      +G++  AI   QR +D
Sbjct: 58  FYLHDYAKALEYHHHDLTLAR-TIGDQLGEA-KASGNLGNTLKVLGNFDEAIVCCQRHLD 115

Query: 565 AWESHGPSAQDELREARRL 583
                     D++ EAR L
Sbjct: 116 ISRELN----DKVGEARAL 130

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 19/165 (11%)

Query: 127 GDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186
           G+ E    +  + L +    +  +R     A     +G+     + +  ++ Y  K   +
Sbjct: 241 GEFETASEYYKKTLLL--ARQLKDRAV--EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296

Query: 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDS- 245
              L +          +         L N  TA+G  ++A+   +K LEI   + ++   
Sbjct: 297 AQELND----------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGE 346

Query: 246 ----RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286
                 L      L  ++    +          +L   +  LG  
Sbjct: 347 LTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRR 391

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  105 bits (265), Expect = 3e-25
 Identities = 50/356 (14%), Positives = 109/356 (30%), Gaps = 62/356 (17%)

Query: 227 LEHLQKCLEIKELILEEDSRELGVANRD-------LAEAFVAVLNFKEALPFGLKALEIH 279
           + H       +E +     +  G            L   + +   ++ A+P   +ALE  
Sbjct: 1   MHHHHHHSSGRENLYF---QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL 57

Query: 280 KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN 339
           +K  GH+  +VA    +L ++Y    +++ A     L    L                  
Sbjct: 58  EKTSGHDHPDVATMLNILALVYRDQNKYKDAAN---LLNDALAIR--------------- 99

Query: 340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA----KRCLEIA 395
            +  LG                +      A    ++      + K+ +A    KR LEI 
Sbjct: 100 -EKTLG----------------KDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEI- 140

Query: 396 CGILDKKETISPE--EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453
                +++ +  +  +VA   + +++  ++  ++E      +R L + +          +
Sbjct: 141 -----REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195

Query: 454 VS-ARIGWLLLLTGKVPQAIPYLESAAERLKES-FGPKHFGVGYIYNNLGAAYLELDRPQ 511
            +   +    L  GK  QA    +    R  E  FG        I+ +         + +
Sbjct: 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255

Query: 512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567
                          +            +NL   Y   G +  A   ++ A+ + +
Sbjct: 256 DGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 89.1 bits (222), Expect = 1e-19
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 26/242 (10%)

Query: 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEE---VADAYSEISMQYESMNEFETAI 431
           +     +Q ++  A    + A   L+  E  S  +   VA   + +++ Y   N+++ A 
Sbjct: 33  LVIQYASQGRYEVAVPLCKQA---LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89

Query: 432 SLLKRTLALLEKLPQAQHSEGSVS-ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490
           +LL   LA+ EK     H   + +   +  L    GK  +A P  + A E  ++  G  H
Sbjct: 90  NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149

Query: 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG 550
             V    NNL        + +     +  A +I    LGP   +  +   NL+  Y   G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209

Query: 551 SYTLAIEFQQRAID-AWES-HGP----------------SAQDELREARRLLEQ-LKIKA 591
            +  A    +  +  A E   G                   + + ++     E     KA
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269

Query: 592 SG 593
             
Sbjct: 270 CK 271

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 88.0 bits (219), Expect = 3e-19
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 18/196 (9%)

Query: 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVS-ARIGWLLLLTGK 467
                   + +QY S   +E A+ L K+ L  LEK     H + +     +  +     K
Sbjct: 25  ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 84

Query: 468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527
              A   L  A    +++ G  H  V    NNL   Y +  + + A  +   A +I +  
Sbjct: 85  YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144

Query: 528 LGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGP--------------- 571
           LG  H D  +   NL+    + G Y     + QRA++ +++  GP               
Sbjct: 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC 204

Query: 572 -SAQDELREARRLLEQ 586
              Q + ++A  L ++
Sbjct: 205 YLKQGKFKQAETLYKE 220

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 69.1 bits (170), Expect = 6e-13
 Identities = 38/233 (16%), Positives = 79/233 (33%), Gaps = 41/233 (17%)

Query: 213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272
           LA +    G+ +EA    ++ LEI+E +L +D  ++     +LA        ++E   + 
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176

Query: 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR 332
            +ALEI++  LG +   VA  +  L   Y    + ++A     L +++L           
Sbjct: 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE---TLYKEIL----------- 222

Query: 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL 392
                   +   G                  + E    +++   +    + K  D     
Sbjct: 223 ----TRAHEREFG----------------SVDDEN-KPIWMHAEEREECKGKQKDGTSFG 261

Query: 393 EIACGILDKKETISPE--EVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443
           E         +    +   V      +   Y    +FE A +L +  +   ++
Sbjct: 262 EYG----GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD 534
                    +  G +        +NL   Y    R + A  +   A + ++ + G  H D
Sbjct: 8   SSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 67

Query: 535 SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGP----------------SAQDEL 577
                  L+  Y     Y  A      A+   E   G                   + + 
Sbjct: 68  VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 127

Query: 578 REARRLLEQ-LKIK 590
           +EA  L ++ L+I+
Sbjct: 128 KEAEPLCKRALEIR 141

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 515 QVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGP-- 571
              +  +++     G      +    NL   Y+S G Y +A+   ++A++  E   G   
Sbjct: 6   HHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH 65

Query: 572 --------------SAQDELREARRLLEQ-LKIK 590
                           Q++ ++A  LL   L I+
Sbjct: 66  PDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 95.7 bits (239), Expect = 5e-22
 Identities = 53/358 (14%), Positives = 102/358 (28%), Gaps = 90/358 (25%)

Query: 213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272
             +  + +  R  A+   ++ LE  E     D  ++      LA  +     +KEA    
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66

Query: 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR 332
             AL I +K LG +   VA     L V+Y    ++++A     L ++ L+          
Sbjct: 67  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE---PLCKRALEIR-------- 115

Query: 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA---- 388
                   +  LG  +   +                A    ++     NQ K  +     
Sbjct: 116 --------EKVLG--KFHPDV---------------AKQLNNLALLCQNQGKAEEVEYYY 150

Query: 389 KRCLEIACGILDKKETISPE--EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446
           +R LEI          + P+   VA   + ++  Y    +++ A +L K  L        
Sbjct: 151 RRALEI------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL-------- 196

Query: 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE 506
                                               ++ FG  +     I+ +       
Sbjct: 197 --------------------------------TRAHEKEFGSVNGDNKPIWMHAEEREES 224

Query: 507 LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
            D+ + +A    +       +            ++L   Y   G    A   +  A  
Sbjct: 225 KDKRRDSAPYGEYGSWYK--ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 49/242 (20%), Positives = 81/242 (33%), Gaps = 26/242 (10%)

Query: 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEE---VADAYSEISMQYESMNEFETAI 431
                        A    + A   L+  E  S  +   VA   + +++ Y   N+++ A 
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQA---LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 432 SLLKRTLALLEKLPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490
            LL   LA+ EK     H   + +   +  L    GK  +A P  + A E  ++  G  H
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123

Query: 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG 550
             V    NNL        + +     +  A +I    LGP   +  +   NL+  Y   G
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183

Query: 551 SYTLAIEFQQRAID-AWE-SHGP----------------SAQDELREARRLLEQ-LKIKA 591
            Y  A    +  +  A E   G                  ++D+ R++    E     KA
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243

Query: 592 SG 593
             
Sbjct: 244 CK 245

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 18/112 (16%)

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
            ++       L    SA  +   A + ++ + G  H D       L+  Y     Y  A 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 557 EFQQRAIDAWES-HGP----------------SAQDELREARRLLEQ-LKIK 590
                A+   E   G                   + + +EA  L ++ L+I+
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 115

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 74/408 (18%), Positives = 135/408 (33%), Gaps = 75/408 (18%)

Query: 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANV 216
              L ++ S ++  +R   S  + + A      ++            P++   +  L NV
Sbjct: 33  TGVLLLLSSIHFQCRRLDRSAHFSTLA------IK----------QNPLLAEAYSNLGNV 76

Query: 217 KTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKAL 276
               G+ +EA+EH +  L +K         +      +LA A VA  + + A+   + AL
Sbjct: 77  YKERGQLQEAIEHYRHALRLK--------PDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128

Query: 277 EIH-KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEI 335
           + +       +          LG +   L   ++A        K ++          A  
Sbjct: 129 QYNPDLYCVRSD---------LGNLLKALGRLEEAK---ACYLKAIE---TQPNFAVAWS 173

Query: 336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395
           +   +  A G+   AI+  +  V       +     +I++G  L     F  A      A
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA----YINLGNVLKEARIFDRAVAAYLRA 229

Query: 396 CGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVS 455
                   ++SP   A  +  ++  Y      + AI   +R + L    P A  +     
Sbjct: 230 L-------SLSPNH-AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN----- 276

Query: 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQ 515
             +   L   G V +A     +A   L     P H       NNL     E    + A +
Sbjct: 277 --LANALKEKGSVAEAEDCYNTALR-LC----PTHADS---LNNLANIKREQGNIEEAVR 326

Query: 516 VFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
           ++  A     + + P  A    A  NL+      G    A+   + AI
Sbjct: 327 LYRKA-----LEVFPEFA---AAHSNLASVLQQQGKLQEALMHYKEAI 366

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 88.4 bits (220), Expect = 5e-19
 Identities = 75/427 (17%), Positives = 139/427 (32%), Gaps = 72/427 (16%)

Query: 178 GYLSKAN--RMLGRLEE-EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234
           G +  A+     G  E  E     +   +P    V L L+++     R + +       +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH-KKGLGHNSVEVAHD 293
           +            L  A  +L   +      +EA+     AL +      G+ +      
Sbjct: 61  KQN--------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN------ 106

Query: 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINT 353
              L        + + A++        L+    + +L     D  N+  ALG+ EEA   
Sbjct: 107 ---LAAALVAAGDMEGAVQA---YVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKAC 157

Query: 354 LKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA 413
                 +  +     A+ + ++G     Q +   A    E A  +     T+ P    DA
Sbjct: 158 Y----LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA--V-----TLDP-NFLDA 205

Query: 414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIP 473
           Y  +    +    F+ A++   R L+L         +       +  +    G +  AI 
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN-------LACVYYEQGLIDLAID 258

Query: 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533
               A E L+    P        Y NL  A  E      A   +  A     + L P HA
Sbjct: 259 TYRRAIE-LQ----PHFPDA---YCNLANALKEKGSVAEAEDCYNTA-----LRLCPTHA 305

Query: 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAI-------DAWESHGP--SAQDELREARRLL 584
              ++  NL+      G+   A+   ++A+        A  +       Q +L+EA    
Sbjct: 306 ---DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362

Query: 585 EQ-LKIK 590
           ++ ++I 
Sbjct: 363 KEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 70.3 bits (173), Expect = 5e-13
 Identities = 61/392 (15%), Positives = 109/392 (27%), Gaps = 118/392 (30%)

Query: 173 FSDSLGYLSKANRMLGRLEEEGLGGSVED------IKPIMHAVHLELANVKTAMGRREEA 226
           F D    L+ A    G +E      +V+         P ++ V  +L N+  A+GR EEA
Sbjct: 100 FIDGYINLAAALVAAGDMEG-----AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154

Query: 227 LEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286
                K +E                  + A A                           +
Sbjct: 155 KACYLKAIET---------------QPNFAVA--------------------------WS 173

Query: 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK 346
           +         LG +++   E   A+      +K +    L    L A I+  N+      
Sbjct: 174 N---------LGCVFNAQGEIWLAIHH---FEKAVT---LDPNFLDAYINLGNVLKEARI 218

Query: 347 FEEAINTLKGVVRQTEKESETRAL--------VFISMGKALCNQEKFADAKRCLEIACGI 398
           F+ A+                RAL        V  ++      Q     A      A   
Sbjct: 219 FDRAVAAYL------------RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-- 264

Query: 399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARI 458
                 + P    DAY  ++   +       A       L L      + ++       +
Sbjct: 265 -----ELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-------L 311

Query: 459 GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518
             +    G + +A+     A E +   F          ++NL +   +  + Q A   + 
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE-VFPEF-------AAAHSNLASVLQQQGKLQEALMHYK 363

Query: 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMG 550
            A     + + P      +A  N+      M 
Sbjct: 364 EA-----IRISP---TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 45/246 (18%)

Query: 187 LGRLEEEGLGGSVED------IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI 240
            G +       ++        + P     ++ L NV       + A+    + L +    
Sbjct: 182 QGEIWL-----AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--- 233

Query: 241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVI 300
                    V + +LA  +        A+    +A+E+       +  + A+    L   
Sbjct: 234 -----PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-----HFPD-AYCN--LANA 280

Query: 301 YSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQ 360
                   +A    +     L+   L      +  + AN++   G  EEA+   +  +  
Sbjct: 281 LKEKGSVAEAE---DCYNTALR---LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 361 TEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ 420
             + +        ++   L  Q K  +A    + A         ISP   ADAYS +   
Sbjct: 335 FPEFAA----AHSNLASVLQQQGKLQEALMHYKEAI-------RISP-TFADAYSNMGNT 382

Query: 421 YESMNE 426
            + M +
Sbjct: 383 LKEMQD 388

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 95.3 bits (236), Expect = 2e-20
 Identities = 94/622 (15%), Positives = 179/622 (28%), Gaps = 175/622 (28%)

Query: 46  HGLEFRTHQPSHTINTLVGNPPQTSTRQRKIKEK---SDLEEAFESAKTSEEMLQIFKQM 102
           H ++F T +  +    ++      S  +    +     D+++  +S  + EE+  I    
Sbjct: 5   HHMDFETGEHQYQYKDIL------SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS- 57

Query: 103 ESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKD---------ERNNRPS 153
                +   G + L   L   QE    EM   F      VL  +             +PS
Sbjct: 58  ----KDAVSGTLRLFWTLLSKQE----EMVQKFVE---EVLRINYKFLMSPIKTEQRQPS 106

Query: 154 LLVAM---CLQVMGSANYSF-KRFSDSLGYLSKANRMLGRLEEE------GLGG---SV- 199
           ++  M       + + N  F K     L    K  + L  L         G+ G   +  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 200 -------EDIKPIM-HAVH-LELANVKTAMGRREEALEHLQK-CLEIKELILEEDSRELG 249
                    ++  M   +  L L N  +     E  LE LQK   +I             
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 250 VANR--DLAEAFVAVL---NFKEAL--------PFGLKALEIHKKGLGHNSV-----EVA 291
           +  R   +      +L    ++  L             A  +  K L    +     +V 
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFKQVT 278

Query: 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW-GLSSELLRAEIDAAN-MQIAL--GKF 347
                    +  L+ H   L  +E  + +L  +     + L  E+   N  ++++     
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 348 EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP 407
            + + T     +    +  T  +      ++  N  + A+ ++  +    +      I P
Sbjct: 338 RDGLATWDN-WKHVNCDKLTTII------ESSLNVLEPAEYRKMFD-RLSVFPPSAHI-P 388

Query: 408 EEV-----ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARI-GWL 461
             +      D      M    +N+     SL+++           Q  E ++S  I    
Sbjct: 389 TILLSLIWFDVIKSDVM--VVVNKLHKY-SLVEK-----------QPKESTIS--IPSIY 432

Query: 462 LLLTGKVPQAIPYLES---AAERLKESFGPKHFGV----GYIYNNLGAAYLELDRPQSAA 514
           L L  K+      L         + ++F            Y Y+++G             
Sbjct: 433 LELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG------------- 478

Query: 515 QVFAFAKDIMDVSLGPHHADSIEACQN---LSKAYSSMGSYTLAIEFQQRAI----DAWE 567
                           HH  +IE  +        +       L   F ++ I     AW 
Sbjct: 479 ----------------HHLKNIEHPERMTLFRMVF-------LDFRFLEQKIRHDSTAWN 515

Query: 568 SHGPSAQDELREARRLLEQLKI 589
           + G             L+QLK 
Sbjct: 516 ASGSILN--------TLQQLKF 529

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 8e-10
 Identities = 64/390 (16%), Positives = 134/390 (34%), Gaps = 83/390 (21%)

Query: 241 LEEDSRELGVANRDL----AEAFVAVLNFKEALPFGLKALEIHKKGLGH---NSVEVAHD 293
           ++ ++ E     +D+     +AFV   + K+      K++ + K+ + H   +   V+  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-PKSI-LSKEEIDHIIMSKDAVSGT 64

Query: 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKT---WGLSSELLRAEIDAANMQIALGKFEEA 350
            RL       L   Q+ + Q +  ++VL+    + +S   ++ E    +M   +  + E 
Sbjct: 65  LRLFWT----LLSKQEEMVQ-KFVEEVLRINYKFLMSP--IKTEQRQPSMMTRM--YIEQ 115

Query: 351 INTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKR-CLE--IACGILDKKETISP 407
            + L    +   K + +R   ++ + +AL        AK   ++  +  G    K  ++ 
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDGVLGSG----KTWVAL 168

Query: 408 EEVADAYSEISMQYE----SMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLL 463
           +       +  M ++    ++    +  ++L+    LL ++     S    S+ I     
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----- 223

Query: 464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523
                   I    S    L+     K       Y N     L L   Q+A    AF    
Sbjct: 224 -----KLRI---HSIQAELRRLLKSKP------YEN---CLLVLLNVQNAKAWNAF---- 262

Query: 524 MDVSLGPHHADSIEACQNL-SKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARR 582
            ++S           C+ L +  +  +  +  A      ++D    H         E + 
Sbjct: 263 -NLS-----------CKILLTTRFKQVTDFLSAATTTHISLD----HHSMTLTP-DEVKS 305

Query: 583 LLEQLKIKASGASINQLPTKALPLPPTSVS 612
           LL    +K        LP + L   P  +S
Sbjct: 306 LL----LKYLDCRPQDLPREVLTTNPRRLS 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 64/386 (16%), Positives = 119/386 (30%), Gaps = 120/386 (31%)

Query: 2   KRASFSILSQLTRCRPQKLAPFLSKNYIHDLTSSSSPLKSCTKAHGLEFRTHQPSHTINT 61
                S+L +   CRPQ L              +++P         +          I  
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR---------EVLTTNPR-----RLSI----------IAE 335

Query: 62  LVGNPPQTSTRQRKIKEKSDLEEAFES---AKTSEEMLQIFKQMESSFDETELGLVGLKI 118
            + +   T    + +     L    ES        E  ++F ++ S F           I
Sbjct: 336 SIRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPP------SAHI 387

Query: 119 ALKL------DQEGGDPEMTLS-FANRALNVLDKDERNNR---PSLLVAMCLQVMGSANY 168
              L      D    D  + ++     +L  ++K  + +    PS+ + + +++      
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVED---IKPIMHAVHLELANVKTAMGRREE 225
             +   D   Y      +    + + L     D      I H  HL             +
Sbjct: 446 H-RSIVDH--Y-----NIPKTFDSDDLIPPYLDQYFYSHIGH--HL-------------K 482

Query: 226 ALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA---VLNFKEALPFGLKALEIHKKG 282
            +EH ++    + + L  D R L    R  + A+ A   +LN        L+ L+ +K  
Sbjct: 483 NIEHPERMTLFRMVFL--DFRFLEQKIRHDSTAWNASGSILNT-------LQQLKFYKP- 532

Query: 283 LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI 342
             +         RL+  I   L +     E+N +  K        ++LL         +I
Sbjct: 533 --YICDNDPKYERLVNAILDFLPKI----EENLICSK-------YTDLL---------RI 570

Query: 343 AL-----GKFEEAINTLKGVVRQTEK 363
           AL       FEEA        +Q ++
Sbjct: 571 ALMAEDEAIFEEA-------HKQVQR 589

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 89.1 bits (221), Expect = 3e-19
 Identities = 37/361 (10%), Positives = 112/361 (31%), Gaps = 29/361 (8%)

Query: 220 MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279
                +A     +  +  + +  E+ ++L +    +      +L++ E          + 
Sbjct: 25  QFSVPDAEILKAEVEQDIQQM--EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT 82

Query: 280 KKGLGHNSVEVAHDRRL-------LGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR 332
           +      + +      L        G+     +E+ +A+     ++K L    +S ++ +
Sbjct: 83  ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF--VSDDIEK 140

Query: 333 AEI--DAANMQIALGKFEEAINTLK---GVVRQTEKESETRALVFISMGKALCNQEKFAD 387
           AE     A     + +   ++  +     + +     S         +     + + +  
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200

Query: 388 AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447
           A   LE A  +    +  +   +A +   I+  Y+   + + A+   ++   +  +    
Sbjct: 201 ALPHLEAALELA--MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258

Query: 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL 507
              +      + W L   G+  +A  ++E   + +       +  +      +    ++ 
Sbjct: 259 LLPKVLFG--LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316

Query: 508 DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567
            +       F              HA      ++ +  + S   +  A  F ++ + A E
Sbjct: 317 RKIHDLLSYFEKKNL---------HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367

Query: 568 S 568
            
Sbjct: 368 D 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 87.2 bits (216), Expect = 1e-18
 Identities = 41/270 (15%), Positives = 94/270 (34%), Gaps = 14/270 (5%)

Query: 305 EEHQKALEQNELSQKVLKTWGLSS---ELLRAEIDAANMQIALGKFEEAINTLKGVVRQT 361
            E ++ ++Q E  Q +L  + L     +L+   ++            E + T++   ++ 
Sbjct: 36  AEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL 95

Query: 362 EKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPE-EVADAYSEISMQ 420
               +  +L F   G    +Q+++ +A      A     +   +S + E A+ + +++  
Sbjct: 96  TGLLKYYSLFFR--GMYEFDQKEYVEAIGYYREA---EKELPFVSDDIEKAEFHFKVAEA 150

Query: 421 YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE 480
           Y  M +   ++  + + L + +  P            I           +A+P+LE+A E
Sbjct: 151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE 210

Query: 481 RLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQ 540
              +        +     N+  +Y      Q A + F  A  +    +       +    
Sbjct: 211 LAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL---F 265

Query: 541 NLSKAYSSMGSYTLAIEFQQRAIDAWESHG 570
            LS      G    A +F +  +D   +  
Sbjct: 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARS 295

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 61/360 (16%), Positives = 124/360 (34%), Gaps = 34/360 (9%)

Query: 93  EEMLQIFKQMESSFD-ETELGLVGLKIALKLDQ-EGGDPEMTLSFANRALNVLDKDERNN 150
            E+ Q  +QME   D      L+  +  L LD  E G            L  ++  ++  
Sbjct: 36  AEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL 95

Query: 151 RPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVH 210
              LL    L   G   +  K + +++GY  +A + L  + ++                H
Sbjct: 96  -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD----------IEKAEFH 144

Query: 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270
            ++A     M +   ++ H+ + L+I +       R +      +A  +    ++ +ALP
Sbjct: 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF-VIAGNYDDFKHYDKALP 203

Query: 271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK--TWGLSS 328
               ALE+         + ++     +   Y    + Q A+E     QK  K     +  
Sbjct: 204 HLEAALELAMDIQNDRFIAISLLN--IANSYDRSGDDQMAVE---HFQKAAKVSREKVPD 258

Query: 329 ELLRAEIDAANMQIALGKFEEAIN----TLKGVVRQTEKESETRALVFISMGKALCNQEK 384
            L +     +      G+ ++A       L  +  ++ K  +   L   ++ K   ++ K
Sbjct: 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318

Query: 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444
             D     E        K+ +    +       +  +ES   FE A +  ++ L   E +
Sbjct: 319 IHDLLSYFE--------KKNLHAY-IEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 30/288 (10%), Positives = 81/288 (28%), Gaps = 28/288 (9%)

Query: 326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE--KESETRALVFISMGKA----- 378
           + S  +  +I+     I      +A      V +  +  +E +   + +  M        
Sbjct: 7   IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLML 66

Query: 379 --LCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR 436
             L   + + +     E+   I   ++ ++      +     M      E+  AI   + 
Sbjct: 67  DYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRE 126

Query: 437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYI 496
               L  +      +     ++        +   ++ ++  A +  +             
Sbjct: 127 AEKELPFVS-DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI-RTIQS 184

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
              +   Y +      A      A ++       +      +  N++ +Y   G   +A+
Sbjct: 185 LFVIAGNYDDFKHYDKALPHLEAALELAM--DIQNDRFIAISLLNIANSYDRSGDDQMAV 242

Query: 557 EFQQRAIDAWESHGPS--------------AQDELREARRLLEQ-LKI 589
           E  Q+A        P                  + ++A + +E+ L  
Sbjct: 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 88.7 bits (220), Expect = 4e-19
 Identities = 45/364 (12%), Positives = 120/364 (32%), Gaps = 29/364 (7%)

Query: 93  EEMLQIFKQMESSFD-ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDK--DERN 149
            E+ Q   QME   D      L+  +  L L+      +M +    R  ++L +   ++ 
Sbjct: 36  REIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA 95

Query: 150 NRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAV 209
               LL        G      + +  ++ +  KA   L  +++                 
Sbjct: 96  RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDR----------IEKAEF 145

Query: 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEAL 269
             +++     M +   ++++ ++  EI +     + R L   +   A  F+ +  +++A+
Sbjct: 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR-LLQCHSLFATNFLDLKQYEDAI 204

Query: 270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329
               KA  + +         +      +G+  +   +++ A+   + +  V +   +   
Sbjct: 205 SHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262

Query: 330 LLRAEIDAANMQIALGKFEEAIN----TLKGVVRQTEKESETRALVFISMGKALCNQEKF 385
           L +A      +   LGK ++A       +    +  +    +      S+  +  ++E  
Sbjct: 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322

Query: 386 ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445
                 LE               ++ D   +++  Y     F+ A +   +   + + + 
Sbjct: 323 QGFFDFLESKMLY---------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ 373

Query: 446 QAQH 449
               
Sbjct: 374 GGVS 377

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 88.3 bits (219), Expect = 5e-19
 Identities = 46/371 (12%), Positives = 116/371 (31%), Gaps = 17/371 (4%)

Query: 200 EDIKPIMHAVHLELA--NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAE 257
             I   ++  ++ +   ++  A   R E  + L +  E ++L L     E          
Sbjct: 10  SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYL 69

Query: 258 AFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS 317
             +  +  +E        LEI KK      +   +     G+      E+  A++  + +
Sbjct: 70  EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA 129

Query: 318 QKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLK---GVVRQTEKESETRALVFIS 374
           +  L       E        +     + +   +++  +    + ++ E  +         
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189

Query: 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL 434
                 + +++ DA    + A  +   +    P+ +      I +   S +++E AI   
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMA--EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247

Query: 435 KRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG 494
           KR +A+ E+      S       I  +    GK+ +A  Y        +++    +    
Sbjct: 248 KRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306

Query: 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL 554
               +L  +  + +  Q             D+          +   +++K Y    ++  
Sbjct: 307 EFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE---------DFAIDVAKYYHERKNFQK 357

Query: 555 AIEFQQRAIDA 565
           A  +  +    
Sbjct: 358 ASAYFLKVEQV 368

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 78.7 bits (194), Expect = 7e-16
 Identities = 36/271 (13%), Positives = 88/271 (32%), Gaps = 13/271 (4%)

Query: 305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE 364
            E ++ L+Q E  Q +   + L     R  +    ++       E    L  ++ + +K+
Sbjct: 36  REIKQELDQMEEDQDLHLYYSLME--FRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK 93

Query: 365 SET-----RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM 419
                           G    +Q ++  A +  + A   L         E A+ + ++S 
Sbjct: 94  QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKL--IFVKDRIEKAEFFFKMSE 151

Query: 420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAA 479
            Y  M +   ++   ++   + ++            +      L   +   AI + + A 
Sbjct: 152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211

Query: 480 ERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEAC 539
              +     +   +G    N+G       + + A   F  A  + + S         +A 
Sbjct: 212 SMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAY 267

Query: 540 QNLSKAYSSMGSYTLAIEFQQRAIDAWESHG 570
             +++ +  +G    A E+  + +   +  G
Sbjct: 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 20/172 (11%), Positives = 54/172 (31%), Gaps = 34/172 (19%)

Query: 78  EKSDLEEAFESAKTSEEMLQIFKQMESSFDE----TELGLVGLKIALKLDQEGGDPEMTL 133
            +S  E+A    K +   + +F++             +  +  K+        G  +   
Sbjct: 236 SQSQYEDAIPYFKRA---IAVFEESNILPSLPQAYFLITQIHYKL--------GKIDKAH 284

Query: 134 SFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEE 193
            + ++ +      +  +   L     L+ +  +    +       +L          E +
Sbjct: 285 EYHSKGMAY--SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL----------ESK 332

Query: 194 GLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDS 245
            L   +ED         +++A         ++A  +  K  ++++LI    S
Sbjct: 333 MLYADLEDF-------AIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 69/426 (16%), Positives = 149/426 (34%), Gaps = 65/426 (15%)

Query: 179 YLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238
                        +     S+ D++      HLEL     A G+  +AL      ++   
Sbjct: 8   SSGVDLGTENLYFQ-----SMADVE-----KHLELGKKLLAAGQLADALSQFHAAVDGD- 56

Query: 239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLG 298
                    +    R  A  F+A+   K ALP   K +++       +    A  +R  G
Sbjct: 57  -----PDNYIAYYRR--ATVFLAMGKSKAALPDLTKVIQLKM-----DFTA-ARLQR--G 101

Query: 299 VIYSGLEEHQKALEQ----NELSQKVLKTWGLSSELLRAE-----IDAANMQIALGKFEE 349
            +     +  +A +      + +    +     S+L++++        A      G +  
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161

Query: 350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409
           AI  L  ++     ++E R L      +    + +   A   L+ A         +  + 
Sbjct: 162 AIAFLDKILEVCVWDAELREL----RAECFIKEGEPRKAISDLKAAS-------KLKNDN 210

Query: 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSA-----RIGWLLLL 464
             +A+ +IS  Y  + + E ++S ++  L L +   +       V            L+ 
Sbjct: 211 -TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269

Query: 465 TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524
            G+   A    ES  +  + S              +   + + ++P  A +V +      
Sbjct: 270 DGRYTDATSKYESVMK-TEPSIAEYTV---RSKERICHCFSKDEKPVEAIRVCSEV---- 321

Query: 525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLL 584
            + + P + +   A ++ ++AY     Y  AI+  + A +  E+     ++ L +A+RLL
Sbjct: 322 -LQMEPDNVN---ALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-QQIREGLEKAQRLL 376

Query: 585 EQLKIK 590
           +Q + +
Sbjct: 377 KQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.6 bits (189), Expect = 6e-15
 Identities = 65/422 (15%), Positives = 129/422 (30%), Gaps = 81/422 (19%)

Query: 163 MGSANYSFKRFSDSLGYLSKA------------NR-----MLGRLEEEGLGGSVED---- 201
           +G    +  + +D+L     A             R      +G+ +      ++ D    
Sbjct: 32  LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA-----ALPDLTKV 86

Query: 202 --IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK-------ELILEEDSRELGVAN 252
             +K    A  L+  ++    G+ +EA +  +K L+         E   +    +     
Sbjct: 87  IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146

Query: 253 RDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALE 312
           R  A       ++  A+ F  K LE+          E+   R L    +    E +KA+ 
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEV-----CVWDAEL---RELRAECFIKEGEPRKAI- 197

Query: 313 QNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL-- 370
                +   K   L ++   A    + +   LG  E +++ ++  ++  +      A   
Sbjct: 198 --SDLKAASK---LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252

Query: 371 ------VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM 424
                   I   + L    ++ DA    E     +  + +I  E    +   I   +   
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSI-AEYTVRSKERICHCFSKD 308

Query: 425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKE 484
            +   AI +    L +      A               L+     +AI   E+A E   E
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALK-------DRAEAYLIEEMYDEAIQDYETAQE-HNE 360

Query: 485 SFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK 544
           +          I   L  A   L + Q           I+ V       + I+A + L+ 
Sbjct: 361 ND-------QQIREGLEKAQRLLKQSQKRDYYK-----ILGVKRNAKKQEIIKAYRKLAL 408

Query: 545 AY 546
            +
Sbjct: 409 QW 410

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 66/393 (16%), Positives = 139/393 (35%), Gaps = 55/393 (13%)

Query: 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEAL 269
           HLEL     A G+  +AL      ++            +    R  A  F+A+   K AL
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRR--ATVFLAMGKSKAAL 57

Query: 270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ----NELSQKVLKTWG 325
           P   K + +       +    A  +R  G +     +  +A +      + +    +   
Sbjct: 58  PDLTKVIALKM-----DFTA-ARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109

Query: 326 LSSELLRAEIDAANMQIA-----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC 380
             S+L++A+        A        +  AI  L  ++     ++E R L      +   
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL----RAECFI 165

Query: 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440
            + +   A   L+ A         +  +   +A+ +IS  Y  + + E ++S ++  L L
Sbjct: 166 KEGEPRKAISDLKAAS-------KLKSDN-TEAFYKISTLYYQLGDHELSLSEVRECLKL 217

Query: 441 LEKLPQAQHSEGSVSARI-----GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY 495
            +   +       V            L+  G+   A    ES  +  + S          
Sbjct: 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-TEPSVAEYTV---R 273

Query: 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA 555
               +   + + ++P  A ++ +       + + P +     A ++ ++AY     Y  A
Sbjct: 274 SKERICHCFSKDEKPVEAIRICSEV-----LQMEPDNV---NALKDRAEAYLIEEMYDEA 325

Query: 556 IEFQQRAIDAWESHGPSAQDELREARRLLEQLK 588
           I+  + A +  E+     ++ L +A+RLL+Q +
Sbjct: 326 IQDYEAAQEHNEND-QQIREGLEKAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 28/165 (16%), Positives = 45/165 (27%), Gaps = 32/165 (19%)

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470
            + + E+  +  +  +   A+S     +        A +       R   + L  GK   
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-------RRATVFLAMGKSKA 55

Query: 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530
           A+P L      LK  F              G   L+  +   A   F        +   P
Sbjct: 56  ALPDLTKVIA-LKMDF-------TAARLQRGHLLLKQGKLDEAEDDFKKV-----LKSNP 102

Query: 531 HHADSIEACQNLSK------------AYSSMGSYTLAIEFQQRAI 563
              +  EA   L K                   YT AI F  + +
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 16/181 (8%)

Query: 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG 466
           P   + A   +   Y  M+ F+ A +  +      +K      +E     ++G +  + G
Sbjct: 22  PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAG 80

Query: 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAA----QVFAFAKD 522
               A        E L  S              +    L       A     +   +A+ 
Sbjct: 81  NWDAARRCFLEERE-LLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139

Query: 523 IMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARR 582
             D            A + L        +   A +   RA D +        D       
Sbjct: 140 ADD------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE----DSEAVNEL 189

Query: 583 L 583
           +
Sbjct: 190 M 190

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 78.9 bits (195), Expect = 5e-17
 Identities = 26/188 (13%), Positives = 54/188 (28%), Gaps = 14/188 (7%)

Query: 369 ALVFISMGKALCNQEKFADA----KRCLEIACGILDKKETISPEEVADAYSEISMQYESM 424
           +     +G      ++F +A    +   + A    D            A  ++ M     
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH------TAEHRALHQVGMVERMA 79

Query: 425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKE 484
             ++ A         LL  LP+   +  + +  +  + L  G +  A    E +     +
Sbjct: 80  GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV-YAQ 138

Query: 485 SFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK 544
               +   +   +  LG    +      A Q +  A+DI    L        E    L+ 
Sbjct: 139 QADDQV-AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA-ELE-DSEAVNELMTRLNG 195

Query: 545 AYSSMGSY 552
                  +
Sbjct: 196 LEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 36/227 (15%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 85  AFESAKTSEEMLQIFKQMESSFDE----TELGLVGLKIALKLDQEGGDPEMTLSFANRAL 140
           AFE+   +    Q    +            LG V               +   +      
Sbjct: 2   AFEAHDYALAERQAQALLAHPATASGARFMLGYV--------YAFMDRFDEARASFQALQ 53

Query: 141 NVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVE 200
                 +  +  +      L  +G        +  +     +   +L  L E+ L  S  
Sbjct: 54  QQ--AQKSGDHTA--EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS-- 107

Query: 201 DIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV 260
                  A   E+A V    G    A +  +K L   +    +D   +  A R L +   
Sbjct: 108 -------ANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQ 158

Query: 261 AVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEH 307
              N  EA    L+A +I  + L  +   V      L  +      H
Sbjct: 159 QEKNLLEAQQHWLRARDIFAE-LEDSE-AVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 13/157 (8%)

Query: 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELAN 215
            +    ++G       RF ++        +   +  +              H    ++  
Sbjct: 25  ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD----------HTAEHRALHQVGM 74

Query: 216 VKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKA 275
           V+   G  + A     +  E+    L ED         ++A   +   +   A     K+
Sbjct: 75  VERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133

Query: 276 LEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALE 312
           L   ++    + V +A   R LG +    +   +A +
Sbjct: 134 LVYAQQ-AD-DQVAIACAFRGLGDLAQQEKNLLEAQQ 168

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 49/368 (13%), Positives = 111/368 (30%), Gaps = 43/368 (11%)

Query: 203 KPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV 262
           K        +  N      + ++A+++    LE+K     ED     V   +L+  +V+V
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----EDP----VFYSNLSACYVSV 52

Query: 263 LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK 322
            + K+ +    KALE+       +  +    RR       GL +   A+        +  
Sbjct: 53  GDLKKVVEMSTKALELKP-----DYSK-VLLRR--ASANEGLGKFADAMFDL---SVLSL 101

Query: 323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ 382
               +   +   ++    + A+ K +E    +        + S   A       + L + 
Sbjct: 102 NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161

Query: 383 EKFADAKRCLEIACGILDKKETISP-EEVADAYSEISMQ-----YESMNEFETAISLLKR 436
              A      +      +  E+    +E+ +  S +  +      ++   F  A  L + 
Sbjct: 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221

Query: 437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYI 496
            L    +  + +          G    L      A   ++ A E L              
Sbjct: 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRV--------NS 272

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
           Y  +     + +        F  A     + L  +++       +  +    + +Y  A 
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKA-----LKLDSNNSS---VYYHRGQMNFILQNYDQAG 324

Query: 557 EFQQRAID 564
           +   +A +
Sbjct: 325 KDFDKAKE 332

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 53/411 (12%), Positives = 113/411 (27%), Gaps = 55/411 (13%)

Query: 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANV 216
           A+ L+  G+  +  K++ D++ Y + A      LE          +K      +  L+  
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWA------LE----------LKE-DPVFYSNLSAC 48

Query: 217 KTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKAL 276
             ++G  ++ +E   K LE+K         +        A A   +  F +A+ F L  L
Sbjct: 49  YVSVGDLKKVVEMSTKALELK--------PDYSKVLLRRASANEGLGKFADAM-FDLSVL 99

Query: 277 EI---HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRA 333
            +            +E   +++ +  +     +   A                  +    
Sbjct: 100 SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159

Query: 334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESET-RALVFISMGKALCNQEKFADAKRCL 392
            + +      + K E             ++       L   S        E F  A R  
Sbjct: 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLF 219

Query: 393 EIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG 452
           E      ++ E +  +  A +     +     N+   A   +K+ + L            
Sbjct: 220 EEQLDKNNEDEKLKEKL-AISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPRV 270

Query: 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS 512
           +    +  ++       +   Y + A +         +     +Y + G     L     
Sbjct: 271 NSYIYMALIMADRNDSTEYYNYFDKALK-----LDSNNS---SVYYHRGQMNFILQNYDQ 322

Query: 513 AAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
           A + F  A       L P +         L+        +         A 
Sbjct: 323 AGKDFDKA-----KELDPENI---FPYIQLACLAYRENKFDDCETLFSEAK 365

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 60/447 (13%), Positives = 141/447 (31%), Gaps = 63/447 (14%)

Query: 72  RQRKIKEKSDLEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEM 131
           R    +  S L+E F    T+           +   + +   +    ++        PE+
Sbjct: 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175

Query: 132 TLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191
           T +  + +     +            +  +   S + + + F+ +     +       L+
Sbjct: 176 TFANYDESNEADKELMNGLS-----NLYKRSPESYDKADESFTKAARLFEEQ------LD 224

Query: 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVA 251
           +       E +K  +          K        A E ++K +E+   +         + 
Sbjct: 225 KNN---EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM--ALI 279

Query: 252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKAL 311
             D         +  E   +  KAL++       N+    +  R  G +   L+ + +A 
Sbjct: 280 MADRN-------DSTEYYNYFDKALKLDS-----NNSS-VYYHR--GQMNFILQNYDQAG 324

Query: 312 EQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV 371
           +      K  +   L  E +   I  A +     KF++          + +++      V
Sbjct: 325 KDF---DKAKE---LDPENIFPYIQLACLAYRENKFDDCETLFS----EAKRKFPEAPEV 374

Query: 372 FISMGKALCNQEKFADAKRCLEIACGI-LDKKETISPEEVADAYSE--ISMQYESMNEFE 428
                + L ++  F  A +  ++A  I L+ K       +A    +  +  +  ++  F 
Sbjct: 375 PNFFAEILTDKNDFDKALKQYDLA--IELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432

Query: 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488
            A +LL++   L  +  QA+         +  + L    + +AI   E +A+ L  +   
Sbjct: 433 EATNLLEKASKLDPRSEQAKI-------GLAQMKLQQEDIDEAITLFEESAD-LARTM-- 482

Query: 489 KHFGVGYIYNNLGAAYLELDRPQSAAQ 515
                      +   + E  + Q   +
Sbjct: 483 -----EEKLQAI--TFAEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 45/362 (12%), Positives = 102/362 (28%), Gaps = 53/362 (14%)

Query: 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270
           +        + + E    +  +  E  + ++   S    +  R       A  +F +A  
Sbjct: 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLS---NLYKRSPESYDKADESFTKAAR 217

Query: 271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSEL 330
              + L+ + +       ++A      G+      +   A E     +K ++        
Sbjct: 218 LFEEQLDKNNEDEKLKE-KLAISLEHTGIFKFLKNDPLGAHED---IKKAIE-------- 265

Query: 331 LRAEIDA----ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFA 386
           L   +++    A +        E  N       +  K     + V+   G+     + + 
Sbjct: 266 LFPRVNSYIYMALIMADRNDSTEYYNYFD----KALKLDSNNSSVYYHRGQMNFILQNYD 321

Query: 387 DAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446
            A +  + A         + PE     Y +++      N+F+   +L         + P+
Sbjct: 322 QAGKDFDKAK-------ELDPEN-IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE 373

Query: 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE 506
             +    +       L       +A+   + A E L+            IY  +     +
Sbjct: 374 VPNFFAEI-------LTDKNDFDKALKQYDLAIE-LENKLDG-------IYVGIAPLVGK 418

Query: 507 LDRPQSAAQVFAFAKDIMD----VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA 562
                    V  F +          L P      +A   L++          AI   + +
Sbjct: 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSE---QAKIGLAQMKLQQEDIDEAITLFEES 475

Query: 563 ID 564
            D
Sbjct: 476 AD 477

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 81.1 bits (200), Expect = 2e-16
 Identities = 60/402 (14%), Positives = 126/402 (31%), Gaps = 44/402 (10%)

Query: 180 LSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI-KE 238
           L +    L   E++    +    +     +   LA +K   G+ E ALE L+K  E+ ++
Sbjct: 24  LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83

Query: 239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA--HDRRL 296
              ++      V   + A  +  +    +   +  K   + +K      +E         
Sbjct: 84  EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143

Query: 297 LGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356
              +  G  ++++A       +K L+    + E       A+         + AI+ L+ 
Sbjct: 144 WTRLKCGGNQNERAK---VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200

Query: 357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSE 416
            +R        + L+ + + K     E+  + ++ +E A          +P    D    
Sbjct: 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA-------LEKAPGV-TDVLRS 252

Query: 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLL------------L 464
            +  Y   +E + AI LLK+ L  +          G       + ++            L
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312

Query: 465 TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF--AFAKD 522
              +  A+ +L+ A E          F    + + L + +   D+ + A   F   F+K+
Sbjct: 313 LELIGHAVAHLKKADEA-----NDNLF---RVCSILASLHALADQYEEAEYYFQKEFSKE 364

Query: 523 IMDVSLGPHHADSIEACQNLSKA-YSSMGSYTLAIEFQQRAI 563
                                      M     AI      +
Sbjct: 365 -------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 40/284 (14%), Positives = 86/284 (30%), Gaps = 42/284 (14%)

Query: 180 LSKANRMLGRLEE-EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238
           L K         E E L     +  P +  V    A         ++A+E L+K LE   
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI- 277

Query: 239 LILEEDSRE----LGVANRDLAEAF-----VAVLNFKEALPFGLKALEIHKKGLGHNSVE 289
                ++      +G   R             +   ++ L     A+   KK    N   
Sbjct: 278 ----PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-N 332

Query: 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK-FE 348
           +     +L  +++  +++++A       QK               +   N Q+   K  +
Sbjct: 333 LFRVCSILASLHALADQYEEAE---YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCED 389

Query: 349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPE 408
           +AI+                        + +   +K  + ++  +    I   + + +  
Sbjct: 390 KAIHHFI---------------------EGVKINQKSREKEKMKDKLQKIAKMRLSKNG- 427

Query: 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG 452
             ++A   ++   E   + + A    +R L     +P A    G
Sbjct: 428 ADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 81.4 bits (201), Expect = 3e-16
 Identities = 61/479 (12%), Positives = 136/479 (28%), Gaps = 85/479 (17%)

Query: 137 NRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG 196
            RA  +L K++  NR S     C  +          +  +L  L + N      +     
Sbjct: 134 ARAKCLLTKEDLYNRSS----ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189

Query: 197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK------------------- 237
              +    +  ++      V T +   + A E  ++ L +                    
Sbjct: 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD 249

Query: 238 ---ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG--HNSVEVAH 292
              +L+L+ +       +     +   +   K +    L+  E +   +     S ++  
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309

Query: 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAIN 352
            +                L    ++ K+L+   +    L             G+  +   
Sbjct: 310 CK---ADTLFVRSRFIDVLA---ITTKILE---IDPYNLDVYPLHLASLHESGEKNKLYL 360

Query: 353 TLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLE-------------IACGIL 399
               +V     E    A+ ++++G       K ++A+R                I     
Sbjct: 361 ISNDLV-DRHPEK---AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416

Query: 400 --DKKET------------ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445
              + E             +        Y  + MQ+  +     A   L+ + AL +  P
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQGT-HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475

Query: 446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL 505
              +        +G +      +  AI + ++A   +K++   +       + NLG AY 
Sbjct: 476 LLLNE-------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA-ATWANLGHAYR 527

Query: 506 ELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
           +L    +A         +       + A        ++  Y       LAI     ++ 
Sbjct: 528 KLKMYDAAIDALNQGLLL-----STNDA---NVHTAIALVYLHKKIPGLAITHLHESLA 578

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 79.3 bits (195), Expect = 5e-16
 Identities = 49/338 (14%), Positives = 104/338 (30%), Gaps = 20/338 (5%)

Query: 258 AFVAVL--NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE 315
           A VA+   N  EA      ALE    G  ++ +       +LG +     E  ++L   +
Sbjct: 21  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATS---VLGEVLHCKGELTRSLALMQ 77

Query: 316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE----KESETRALV 371
            ++++ +   +    L + I  + +  A G  + A  T +   +       ++      +
Sbjct: 78  QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137

Query: 372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI 431
                + L    +  +A+         ++   +  P++     + +     +  + + A 
Sbjct: 138 VRIRAQLLWAWARLDEAEASARSG---IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR 194

Query: 432 SLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491
           S L R   LL           + +        +TG    A  +L   A+         + 
Sbjct: 195 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE----FANNH 250

Query: 492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551
            +   + N+  A + L   + A  V     +                   L++ Y   G 
Sbjct: 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL--NRNLLLLNQLYWQAGR 308

Query: 552 YTLAIEFQQRAIDAWESHG--PSAQDELREARRLLEQL 587
            + A      A+      G       E     + L QL
Sbjct: 309 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 346

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 64.6 bits (157), Expect = 3e-11
 Identities = 43/318 (13%), Positives = 92/318 (28%), Gaps = 23/318 (7%)

Query: 127 GDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186
           G+P+     A  AL  L      +R      +   V+G   +     + SL  + +  +M
Sbjct: 28  GNPDEAERLAKLALEELPPGWFYSR-----IVATSVLGEVLHCKGELTRSLALMQQTEQM 82

Query: 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR 246
             + +                   ++ + +  A G  + A E  +K  ++      E   
Sbjct: 83  ARQHDVW----------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132

Query: 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE 306
                 R  A+   A     EA       +E+      +   +      +L        +
Sbjct: 133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS---YQPQQQLQCLAMLIQCSLARGD 189

Query: 307 HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL--GKFEEAINTLKGVVRQTEKE 364
              A  Q    + +L      S+ + +  +   +      G    A N L+   +     
Sbjct: 190 LDNARSQLNRLENLLGNGKYHSDWI-SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248

Query: 365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM 424
           +      + ++ +A     +F  A+  LE        +      ++      ++  Y   
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA--RSLRLMSDLNRNLLLLNQLYWQA 306

Query: 425 NEFETAISLLKRTLALLE 442
                A  +L   L L  
Sbjct: 307 GRKSDAQRVLLDALKLAN 324

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 31/237 (13%), Positives = 72/237 (30%), Gaps = 24/237 (10%)

Query: 146 DERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPI 205
           +E++     +    +++     +++ R  ++         +L   +            P 
Sbjct: 124 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ------------PQ 171

Query: 206 MHAVHLE-LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL- 263
                L  L     A G  + A   L     ++ L+         ++N +        + 
Sbjct: 172 QQLQCLAMLIQCSLARGDLDNARSQLN---RLENLLGNGKYHSDWISNANKVRVIYWQMT 228

Query: 264 -NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK 322
            +   A       L    K    N+  +    R +      L E + A    E   +  +
Sbjct: 229 GDKAAAA----NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284

Query: 323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKAL 379
           +  L S+L R  +    +    G+  +A   L   ++   +        F+  G+A+
Sbjct: 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS--HFVIEGEAM 339

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVP 469
              A+  +   +  +  F  A+   ++ L + ++    + +E    + +G   +  G+  
Sbjct: 8   QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLGEFE 66

Query: 470 QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF----AFAKDIMD 525
            A  Y +     L                +LG  Y  L   + A        A A+++ D
Sbjct: 67  TASEYYKKTLL-LARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG 570
                       AC +L  AY+++G++  A+ F ++ ++     G
Sbjct: 125 ------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELAN 215
                  +G+ +Y    F D++    +   +     +          K      +  L N
Sbjct: 8   QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD----------KAAERIAYSNLGN 57

Query: 216 VKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKA 275
               +G  E A E+ +K L +   +  +D      +   L   +  + ++++A+ + LK 
Sbjct: 58  AYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115

Query: 276 LEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALE 312
           L I ++         A     LG  Y+ L  H +A+ 
Sbjct: 116 LAIAQELKDRIGEGRACWS--LGNAYTALGNHDQAMH 150

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 16/156 (10%)

Query: 297 LGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAIN---- 352
           LG  +  L   + A+  +E    + K +G  +    A  +  N  I LG+FE A      
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

Query: 353 TLKGVVRQTEKESETRALVFISMGKALCNQEKFADA----KRCLEIACGILDKKETISPE 408
           TL   + +  K+    A    S+G      + +  A     + L IA  + D+       
Sbjct: 75  TLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG----- 127

Query: 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444
               A   +   Y ++   + A+   ++ L +  ++
Sbjct: 128 -EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 127 GDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186
           G+    +    + L +    E  ++ +    +    +G+A      F  +  Y  K   +
Sbjct: 23  GNFRDAVIAHEQRLLI--AKEFGDKAA--ERIAYSNLGNAYIFLGEFETASEYYKKTLLL 78

Query: 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR 246
             +L++          + +       L N  T +   E+A+++  K L I + +  +D  
Sbjct: 79  ARQLKD----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRI 126

Query: 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK 281
             G A   L  A+ A+ N  +A+ F  K LEI ++
Sbjct: 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 26/121 (21%)

Query: 490 HFGVGYIYNNLGAAYLELDRPQSAA----QVFAFAKDIMDVSLGPHHADSIEACQNLSKA 545
               G  + NLG  +  L   + A     Q    AK+  D         +     NL  A
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERIA---YSNLGNA 58

Query: 546 YSSMGSYTLAIEFQQRAIDAWESHGP---------------SAQDELREARRLLEQ-LKI 589
           Y  +G +  A E+ ++ +                       +   +  +A     + L I
Sbjct: 59  YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118

Query: 590 K 590
            
Sbjct: 119 A 119

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 58/430 (13%), Positives = 127/430 (29%), Gaps = 72/430 (16%)

Query: 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANV 216
           A+ L+  G+  ++ K F++++ Y   A      +E          + P     +  ++  
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYA------IE----------LDPNEPVFYSNISAC 68

Query: 217 KTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDL------AEAFVAVL---NFKE 267
             + G  E+ +E   K LEIK    +   R    AN  L            +    +F  
Sbjct: 69  YISTGDLEKVIEFTTKALEIKPDHSKALLR-RASANESLGNFTDAMFDLSVLSLNGDFDG 127

Query: 268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLL-------GVIYSGLEEHQKALEQNELSQKV 320
           A    +    ++K+ +   +  ++ D             + S        LE + ++   
Sbjct: 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS 187

Query: 321 --LKTWGLSSELLRAEIDA--ANMQIALGKFEEAINTLKGVVRQTEKESETR---ALVFI 373
                + L S+ L+    A      +A     ++ +    ++     +   R   AL   
Sbjct: 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247

Query: 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISL 433
             G     +    DA+  L+ +         I+     ++Y  +++        +     
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQES---------INLHPTPNSYIFLALTLADKENSQEFFKF 298

Query: 434 LKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV 493
            ++ + L  + P   +         G +  +      A    + A   L           
Sbjct: 299 FQKAVDLNPEYPPTYY-------HRGQMYFILQDYKNAKEDFQKAQS-LNPEN------- 343

Query: 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYT 553
            Y Y  L     +  +   +   F   K               E     ++  +  G + 
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFD 395

Query: 554 LAIEFQQRAI 563
            AI+    A 
Sbjct: 396 TAIKQYDIAK 405

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 54/362 (14%), Positives = 101/362 (27%), Gaps = 73/362 (20%)

Query: 200 EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE---LGVANRDLA 256
           + ++                     +A   LQ+ + +              L +   D  
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH-----PTPNSYIFLALTLADKE 290

Query: 257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL 316
                  N +E   F  KA++++ +          +  R  G +Y  L++++ A E    
Sbjct: 291 -------NSQEFFKFFQKAVDLNPE------YPPTYYHR--GQMYFILQDYKNAKEDF-- 333

Query: 317 SQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMG 376
            QK      L+ E +   I  A +    GKF E+         +T+ +  T   V     
Sbjct: 334 -QKAQS---LNPENVYPYIQLACLLYKQGKFTESEAFFN----ETKLKFPTLPEVPTFFA 385

Query: 377 KALCNQEKFADA----KRCLEI----ACGILDKKETISPEEVADAYSEISMQYESMNEFE 428
           + L ++  F  A         +        +     I    +    S          +F 
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445

Query: 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488
            AI LL +   L  +  QA+         +  L L   K+ +AI   E +A  L  +   
Sbjct: 446 AAIKLLTKACELDPRSEQAKI-------GLAQLKLQMEKIDEAIELFEDSAI-LARTM-- 495

Query: 489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS 548
                          + E  + Q   +                        +     Y +
Sbjct: 496 -----DEKLQAT--TFAEAAKIQKRLRADPII---------------SAKMELTLARYRA 533

Query: 549 MG 550
            G
Sbjct: 534 KG 535

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 74.5 bits (183), Expect = 9e-15
 Identities = 42/276 (15%), Positives = 81/276 (29%), Gaps = 28/276 (10%)

Query: 337 AANMQIALGKFEEAINTLK--GVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI 394
           AA       + E+A +            +     A  F   G  L + ++  +A + +E 
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101

Query: 395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV 454
           A  +    E  +P+  A A        E ++    A+ L ++  A+ E   +       +
Sbjct: 102 ASVMY--VENGTPDTAAMALDRAGKLMEPLD-LSKAVHLYQQAAAVFENE-ERLRQAAEL 157

Query: 455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAA 514
             +   LL+   K  +A   L+      KE     +              L      +A 
Sbjct: 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQ 215

Query: 515 QVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM--GSYTLAIEFQQ-RAIDAWESHGP 571
           +    +  I     G   ++   A ++L +AY                   +D   +   
Sbjct: 216 KCVRESYSI----PGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRSPLVTYMDNDYA--- 268

Query: 572 SAQDELREARRLLEQLKIKASGASINQLPTKALPLP 607
                     +L   LK+   G    +    A   P
Sbjct: 269 ----------KLAISLKVPGGGGGKKKPSASASAQP 294

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 35/257 (13%), Positives = 84/257 (32%), Gaps = 21/257 (8%)

Query: 212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPF 271
           + A       + E+A +   +  E               A          +    EA+ +
Sbjct: 41  KAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 272 GLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELL 331
             KA  ++ +    ++  +A DR   G +     +  KA+   + +  V +      +  
Sbjct: 99  IEKASVMYVENGTPDTAAMALDR--AGKLME-PLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 332 RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR--ALVFISMGKALCNQEKFADAK 389
                A+ + +   KF+EA  +L+      ++           I+      ++  +  A+
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215

Query: 390 RCLEIACGILDKKETISPEEVADAYSEISMQYESMN--EFETA-----ISLL---KRTLA 439
           +C+  +  I     +    E   A  ++   Y+  +  +         ++ +      LA
Sbjct: 216 KCVRESYSIPGFSGS----EDCAALEDLLQAYDEQDEEQLLRVCRSPLVTYMDNDYAKLA 271

Query: 440 LLEKLPQAQHSEGSVSA 456
           +  K+P     +   SA
Sbjct: 272 ISLKVPGGGGGKKKPSA 288

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 25/196 (12%), Positives = 63/196 (32%), Gaps = 17/196 (8%)

Query: 382 QEKFADAKRCLEIACGILDKKETIS-------PEEVADAYSEISMQYESMNEFETAISLL 434
            +K ++A   +  A    +K    S        +  A  Y++ ++ +++  + E A    
Sbjct: 4   AQKISEAHEHIAKA----EKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAY 59

Query: 435 KRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG 494
            +         ++         + G +L    ++P+A+ Y+E A+    E+         
Sbjct: 60  LQEAEAHANN-RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTA 115

Query: 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL 554
            +  +     +E      A  ++  A  + +       A   E     S+       +  
Sbjct: 116 AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA--AELIGKASRLLVRQQKFDE 173

Query: 555 AIEFQQRAIDAWESHG 570
           A    Q+    ++   
Sbjct: 174 AAASLQKEKSMYKEME 189

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 43/351 (12%), Positives = 94/351 (26%), Gaps = 53/351 (15%)

Query: 209 VHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA 268
           V + LA         +   +     +E                        V +    E 
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------CLPVHIGTLVELNKANEL 75

Query: 269 LPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL-EEHQKALEQNELSQKVLKTWGLS 327
                K ++++          V+     +G  Y  +  +++ A        K      L 
Sbjct: 76  FYLSHKLVDLYPS------NPVSWF--AVGCYYLMVGHKNEHARRY---LSKATT---LE 121

Query: 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD 387
                A I   +      + ++A+       +  +       L  + +G           
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC----HLPMLYIGLEYGLTNNSKL 177

Query: 388 AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447
           A+R    A        +I+PE+      E+ +      E++TA       L  ++ +   
Sbjct: 178 AERFFSQAL-------SIAPED-PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229

Query: 448 QHSEGSVSAR--IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL 505
              +        +G +     K  +A+ Y   A         P++      Y+ +G  + 
Sbjct: 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV-----LIPQNAST---YSAIGYIHS 281

Query: 506 ELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
            +   ++A   F  A     + L         +   L          + A 
Sbjct: 282 LMGNFENAVDYFHTA-----LGLRRDDT---FSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 49/328 (14%), Positives = 90/328 (27%), Gaps = 75/328 (22%)

Query: 255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314
           LAE      +FK         +E                  +       L +  +     
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVMEKDP-----FHASCLP---VHIGTLVELNKANELFY-- 77

Query: 315 ELSQKVLKTWGLSSELLRAEIDAANMQIALG--------KFEEAINTLKGVVRQTEKESE 366
                      LS +L+           A+G        K E A   L            
Sbjct: 78  -----------LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS----------- 115

Query: 367 TRAL--------VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEIS 418
            +A          +I+ G +   + +   A      A         +           I 
Sbjct: 116 -KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA-------QLMKGC-HLPMLYIG 166

Query: 419 MQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESA 478
           ++Y   N  + A     + L++  + P   H  G V           G+   A  +   A
Sbjct: 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV-------AFQNGEWKTAEKWFLDA 219

Query: 479 AERLKESFGPKHFGVGY--IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSI 536
            E   ++ G +     +  + NNLG    +L +   A      A  +      P +A   
Sbjct: 220 LE-KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-----IPQNA--- 270

Query: 537 EACQNLSKAYSSMGSYTLAIEFQQRAID 564
                +   +S MG++  A+++   A+ 
Sbjct: 271 STYSAIGYIHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 31/233 (13%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
           ++       +   +        ++A+       ++         +   +    +   +  
Sbjct: 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------KGCHLPMLYIGLEYGL 171

Query: 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321
             N K A  F  +AL I           V H+   +GV+     E + A +    + + +
Sbjct: 172 TNNSKLAERFFSQALSIAP-----EDPFVMHE---VGVVAFQNGEWKTAEKWFLDALEKI 223

Query: 322 KTWGLSSELLRAEIDAANMQIAL---GKFEEAINTLKGVVRQTEKESETRALVFISMGKA 378
           K  G    + + E    N+        K+ EA++  +  +    + +      + ++G  
Sbjct: 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS----TYSAIGYI 279

Query: 379 LCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI 431
                 F +A      A   L     +  ++   + + +    E       A 
Sbjct: 280 HSLMGNFENAVDYFHTA---LG----LRRDD-TFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 36/240 (15%)

Query: 338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397
           A        F+        V+    ++    A         L    K  +          
Sbjct: 29  AERHYYNCDFKMCYKLTSVVM----EKDPFHASCLPVHIGTLVELNKANELFYLSHKLV- 83

Query: 398 ILDKKETISPEEVADAYSEISMQYESM-NEFETAISLLKRTLALLEKLPQAQHSEGSVSA 456
                  + P     ++  +   Y  + ++ E A   L +   L +    A  +      
Sbjct: 84  ------DLYPSN-PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA------ 130

Query: 457 RIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV 516
             G    +  +  QA+    +AA +L                 +G  Y   +  + A + 
Sbjct: 131 -YGHSFAVESEHDQAMAAYFTAA-QLM----KGCHLP---MLYIGLEYGLTNNSKLAERF 181

Query: 517 FAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDE 576
           F+ A     +S+ P           +       G +  A ++   A++  ++ G     +
Sbjct: 182 FSQA-----LSIAPEDP---FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 26/231 (11%), Positives = 56/231 (24%), Gaps = 54/231 (23%)

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA------------QHSEGSVSAR- 457
            D    ++ ++    +F+    L    +                     + +E    +  
Sbjct: 22  LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81

Query: 458 --------------IGWLLLLTGKVP-QAIPYLESAAERLKESFGPKHFGVGYIYNNLGA 502
                         +G   L+ G     A  YL  A   L++++       G  +   G 
Sbjct: 82  LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT-LEKTY-------GPAWIAYGH 133

Query: 503 AYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA 562
           ++        A   +  A       L             +   Y    +  LA  F  +A
Sbjct: 134 SFAVESEHDQAMAAYFTA-----AQLMKGCH---LPMLYIGLEYGLTNNSKLAERFFSQA 185

Query: 563 I-------DAWESHGP--SAQDELREARRLLEQ-LKIKASGASINQLPTKA 603
           +             G       E + A +     L+   +  +   +    
Sbjct: 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 28/154 (18%)

Query: 170 FKRFSDSLGYLSKANRMLGRLEE--EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEAL 227
            K     + Y+     +    +        ++  I P    V  E+  V    G  + A 
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS-IAPEDPFVMHEVGVVAFQNGEWKTAE 213

Query: 228 EHLQKCLEIKELILEEDSRE--------LGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279
           +     LE  + I  E + +        LG   R L +       + EAL +  +AL + 
Sbjct: 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-------YAEALDYHRQALVLI 266

Query: 280 -KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALE 312
            +    +++         +G I+S +   + A++
Sbjct: 267 PQNASTYSA---------IGYIHSLMGNFENAVD 291

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 71.1 bits (175), Expect = 7e-14
 Identities = 37/270 (13%), Positives = 79/270 (29%), Gaps = 33/270 (12%)

Query: 297 LGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356
                     + +A+E      K+      S  +       A     L K++ A   ++ 
Sbjct: 9   YADFLFKNNNYAEAIEV---FNKLEAKKYNSPYIYN---RRAVCYYELAKYDLAQKDIET 62

Query: 357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSE 416
              +        +  F   GK L  + + + A +  + A   +D           D Y +
Sbjct: 63  YFSKVNATKAK-SADFEYYGKILMKKGQDSLAIQQYQAA---VD----RDTTR-LDMYGQ 113

Query: 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE 476
           I   + +   F  AI  +++ +      P+  +        +G       +  +A     
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE-------LGQAYYYNKEYVKADSSFV 166

Query: 477 SAAERLKESFGPKHFGVGYIYNNLGAAYLELD---RPQSAAQVFAFAKDIMDVSLGPHHA 533
              E LK    P  +     Y     A    D   +   A   +    ++       +  
Sbjct: 167 KVLE-LK----PNIY---IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218

Query: 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
           + IEA + ++  Y+       A    +  +
Sbjct: 219 ELIEANEYIAYYYTINRDKVKADAAWKNIL 248

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 42/289 (14%), Positives = 78/289 (26%), Gaps = 35/289 (12%)

Query: 264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323
           N+ EA+    K           NS    +      V Y  L ++  A +  E     +  
Sbjct: 18  NYAEAIEVFNKLEAKKY-----NSPY-IY--NRRAVCYYELAKYDLAQKDIETYFSKVN- 68

Query: 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE 383
              +            + +  G+   AI   +  V +     +     +  +G    N+ 
Sbjct: 69  --ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM----YGQIGSYFYNKG 122

Query: 384 KFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443
            F  A     I    ++K+   +  +    + E+   Y    E+  A S   + L L   
Sbjct: 123 NFPLA-----IQY--MEKQIRPTTTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 444 LPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA 503
           +          +A          K   A PY E   E            +      +   
Sbjct: 175 IYIGYLWRARANAAQD----PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230

Query: 504 YLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSY 552
           Y        A    A+   +   +L P +    +A   L         +
Sbjct: 231 YTINRDKVKA--DAAWKNIL---ALDPTNK---KAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 37/246 (15%), Positives = 67/246 (27%), Gaps = 35/246 (14%)

Query: 338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397
           A+       + EAI        + E +      ++           K+  A++ +E    
Sbjct: 10  ADFLFKNNNYAEAIEVFN----KLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET--- 62

Query: 398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSAR 457
               K   +    +  +           +   AI   +  +                   
Sbjct: 63  -YFSKVNATKA-KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ------- 113

Query: 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
           IG      G  P AI Y+E                   ++  LG AY        A   F
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIR-PT----TTDP---KVFYELGQAYYYNKEYVKADSSF 165

Query: 518 AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS---YTLAIEFQQRAIDAWESHGPSAQ 574
                   + L P+           ++A ++        LA  + ++ I+     G   +
Sbjct: 166 VKV-----LELKPNIY---IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 575 DELREA 580
           DEL EA
Sbjct: 218 DELIEA 223

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 16/154 (10%), Positives = 43/154 (27%), Gaps = 20/154 (12%)

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470
            D     +      N +  AI +  +  A     P   +                 K   
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-------RAVCYYELAKYDL 55

Query: 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530
           A   +E+   ++  +           +   G   ++  +   A  +  +   +       
Sbjct: 56  AQKDIETYFSKVNAT--KAKS---ADFEYYGKILMKKGQDSLA--IQQYQAAV---DRDT 105

Query: 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
                 +    +   + + G++ LAI++ ++ I 
Sbjct: 106 TRL---DMYGQIGSYFYNKGNFPLAIQYMEKQIR 136

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 31/284 (10%), Positives = 78/284 (27%), Gaps = 48/284 (16%)

Query: 163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR 222
                +    +++++   +K                    K     ++   A     + +
Sbjct: 9   YADFLFKNNNYAEAIEVFNKL------EA----------KKYNSPYIYNRRAVCYYELAK 52

Query: 223 REEAL---EHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279
            + A    E     +   +     D    G                  A+     A++  
Sbjct: 53  YDLAQKDIETYFSKVNATK-AKSADFEYYGKILMKKG-------QDSLAIQQYQAAVDRD 104

Query: 280 KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN 339
                   +++       G  +        A++  E   K ++    ++   +   +   
Sbjct: 105 T-----TRLDMYGQI---GSYFYNKGNFPLAIQYME---KQIR---PTTTDPKVFYELGQ 150

Query: 340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ---EKFADAKRCLEIAC 396
                 ++ +A ++   V+   E +     + ++   +A   Q    K   AK   E   
Sbjct: 151 AYYYNKEYVKADSSFVKVL---ELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206

Query: 397 GILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440
            +         +E+ +A   I+  Y    +   A +  K  LAL
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 53/399 (13%), Positives = 105/399 (26%), Gaps = 67/399 (16%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
           + P            K A+   +  L  L +   +          E  VA         A
Sbjct: 101 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--------PEQVVAIASHDGGKQA 152

Query: 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321
           +   +  LP   +A  +         V         G     LE  Q+ L       +  
Sbjct: 153 LETVQALLPVLCQAHGLT-----PEQVVAIASN---GGGKQALETVQRLLPV---LCQAH 201

Query: 322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN 381
               L+ + + A       + AL   +  +  L      T ++         S G     
Sbjct: 202 G---LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA----IASNGGGKQA 254

Query: 382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALL 441
            E          +    L +   ++P++   A +  S   +++   +  + +L +   L 
Sbjct: 255 LETVQRL-----LPV--LCQAHGLTPQQ-VVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 442 EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLG 501
            +   A  S G               V + +P L  A         P+         +  
Sbjct: 307 PQQVVAIASNGGG-------KQALETVQRLLPVLCQAHG-----LTPQQV---VAIASHD 351

Query: 502 AAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR 561
                L+  Q         +      L P   + + A  +      ++ +    +    +
Sbjct: 352 GGKQALETVQRLLP--VLCQAH---GLTP---EQVVAIASNGGGKQALETVQRLLPVLCQ 403

Query: 562 AI-------DAWESHGPSAQD--ELREARRLLEQ-LKIK 590
           A         A  SH    Q    ++    +L Q   + 
Sbjct: 404 AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 442

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 50/397 (12%), Positives = 102/397 (25%), Gaps = 68/397 (17%)

Query: 173 FSDSLGYLSKANRMLGRLEEEGLGGSVED------IKPIMHAVHLELANVKTAMGRREEA 226
              ++       + L  ++       +        + P            K A+   +  
Sbjct: 139 QVVAIASHDGGKQALETVQA-----LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRL 193

Query: 227 LEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286
           L  L +   +          +  VA         A+   +  LP   +A  +        
Sbjct: 194 LPVLCQAHGLT--------PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-----PQ 240

Query: 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK 346
            V  A      G     LE  Q+ L       +      L+ + + A    +  + AL  
Sbjct: 241 QVV-AIASN--GGGKQALETVQRLLPV---LCQAHG---LTPQQVVAIASNSGGKQALET 291

Query: 347 FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406
            +  +  L      T ++         S G      E        L  A G       ++
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVA----IASNGGGKQALETVQRLLPVLCQAHG-------LT 340

Query: 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG 466
           P++   A +      +++   +  + +L +   L  +   A  S        G       
Sbjct: 341 PQQ-VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS-------NGGGKQALE 392

Query: 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDV 526
            V + +P L  A         P+         +       L+  Q         +     
Sbjct: 393 TVQRLLPVLCQAHG-----LTPEQ---VVAIASHDGGKQALETVQRLLP--VLCQAH--- 439

Query: 527 SLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
            L P     + A  +      ++ S    +     A+
Sbjct: 440 GLTP---QQVVAIASNGGGRPALESIVAQLSRPDPAL 473

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 34/241 (14%), Positives = 65/241 (26%), Gaps = 36/241 (14%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
           + P         +  K A+   +  L  L +   +          +  VA         A
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT--------PQQVVAIASNGGGKQA 322

Query: 262 VLNFKEALPFGLKALEIH-KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320
           +   +  LP   +A  +  ++ +   S                LE  Q+ L       + 
Sbjct: 323 LETVQRLLPVLCQAHGLTPQQVVAIAS---------HDGGKQALETVQRLLPV---LCQA 370

Query: 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC 380
                L+ E + A       + AL   +  +  L      T ++         S      
Sbjct: 371 HG---LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA----IASHDGGKQ 423

Query: 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440
             E        L  A G+       +P++   A +       ++      +S     LA 
Sbjct: 424 ALETVQRLLPVLCQAHGL-------TPQQ-VVAIASNGGGRPALESIVAQLSRPDPALAA 475

Query: 441 L 441
           L
Sbjct: 476 L 476

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 32/233 (13%), Positives = 58/233 (24%), Gaps = 37/233 (15%)

Query: 173 FSDSLGYLSKANRMLGRLEEEGLGGSVED------IKPIMHAVHLELANVKTAMGRREEA 226
              ++   S   + L  ++       +        + P            K A+   +  
Sbjct: 275 QVVAIASNSGGKQALETVQR-----LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 329

Query: 227 LEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286
           L  L +   +          +  VA         A+   +  LP   +A  +        
Sbjct: 330 LPVLCQAHGLT--------PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-----PE 376

Query: 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK 346
            V         G     LE  Q+ L          +  GL+ E + A       + AL  
Sbjct: 377 QVVAIASN---GGGKQALETVQRLLPVLC------QAHGLTPEQVVAIASHDGGKQALET 427

Query: 347 FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGIL 399
            +  +  L      T ++         S G      E         + A   L
Sbjct: 428 VQRLLPVLCQAHGLTPQQVVA----IASNGGGRPALESIVAQLSRPDPALAAL 476

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 48/309 (15%), Positives = 96/309 (31%), Gaps = 65/309 (21%)

Query: 344 LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE 403
            G     I  ++  + Q   ++E     +  +G      E    A   L+          
Sbjct: 78  EGDLPVTILFMEAAILQDPGDAE----AWQFLGITQAENENEQAAIVALQRCL------- 126

Query: 404 TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL-- 461
            + P     A   +++ Y + +  + A   LK  +    K      ++         +  
Sbjct: 127 ELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185

Query: 462 -LLLTGKVPQAIPYLESAAERLKESFGPK-HFGVGYI----------------------- 496
             + +  +         AA +  +   P    G+G +                       
Sbjct: 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245

Query: 497 ----YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSY 552
               +N LGA     DR + A  V A+ + +    + P       +  NL  +  ++G+Y
Sbjct: 246 DYSLWNRLGATLANGDRSEEA--VEAYTRAL---EIQPGFI---RSRYNLGISCINLGAY 297

Query: 553 TLAIEFQQRAI-------DAWESHGPSAQDE----LREARRLLEQ--LKIKASGASINQL 599
             A+     A+       +  +   P+        LR A  L++Q  L   A+   ++ L
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357

Query: 600 PTKALPLPP 608
             +A  L P
Sbjct: 358 -LRAFNLDP 365

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/251 (13%), Positives = 73/251 (29%), Gaps = 69/251 (27%)

Query: 173 FSDSLGYLSKANRMLGRLEE--EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHL 230
            +++  +L          +     L   +E ++P      + LA   T    +++A E L
Sbjct: 98  DAEAWQFLGITQAENENEQAAIVALQRCLE-LQPNNLKALMALAVSYTNTSHQQDACEAL 156

Query: 231 QKCLEIK----------ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI-- 278
           +  ++            +       R        ++++ V     +      L+A     
Sbjct: 157 KNWIKQNPKYKYLVKNKKGSPGLTRR--------MSKSPVDSSVLEGVKELYLEAAHQNG 208

Query: 279 -HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA 337
                              LGV++    E  +A++        L         +R E  +
Sbjct: 209 DMIDPDLQTG---------LGVLFHLSGEFNRAIDA---FNAALT--------VRPEDYS 248

Query: 338 A--NMQIAL---GKFEEAINTLKGVVRQTEKESETRAL--------VFISMGKALCNQEK 384
               +   L    + EEA+            E+ TRAL           ++G +  N   
Sbjct: 249 LWNRLGATLANGDRSEEAV------------EAYTRALEIQPGFIRSRYNLGISCINLGA 296

Query: 385 FADAKRCLEIA 395
           + +A      A
Sbjct: 297 YREAVSNFLTA 307

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 27/237 (11%), Positives = 68/237 (28%), Gaps = 38/237 (16%)

Query: 364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES 423
           ++   + +   +       + +  A   +E A           P+    A+   +  Y+ 
Sbjct: 3   KANQVSNIKTQLAMEYMRGQDYRQATASIEDA-------LKSDPKN-ELAWLVRAEIYQY 54

Query: 424 MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK 483
           +   + A    ++ L++     +  ++ G        L     +  +++ Y + A   L 
Sbjct: 55  LKVNDKAQESFRQALSIKPDSAEINNNYGWF------LCGRLNRPAESMAYFDKA---LA 105

Query: 484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS 543
           +   P  +       N G    +  +   A      +     ++  P       A + L+
Sbjct: 106 DPTYPTPYIA---NLNKGICSAKQGQFGLAEAYLKRS-----LAAQPQFP---PAFKELA 154

Query: 544 KAYSSMGSYTLAIEFQQRAIDAWESHGPS----------AQDELREARRLLEQLKIK 590
           +     G    A  + ++     E               A    + A     QL+  
Sbjct: 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 28/243 (11%), Positives = 59/243 (24%), Gaps = 73/243 (30%)

Query: 209 VHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA 268
           +  +LA          +A   ++  L+                      A          
Sbjct: 10  IKTQLAMEYMRGQDYRQATASIEDALKSD---------------PKNELA---------- 44

Query: 269 LPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS 328
                                          IY  L+ + KA E     ++ L    +  
Sbjct: 45  ----------------WLV---------RAEIYQYLKVNDKAQESF---RQALS---IKP 73

Query: 329 ELLRAEIDAANMQIAL----GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK 384
           +         N    L     +  E++      +        T  +  ++ G     Q +
Sbjct: 74  DSAEI---NNNYGWFLCGRLNRPAESMAYFDKALADPTY--PTPYIANLNKGICSAKQGQ 128

Query: 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444
           F  A+  L+ +           P+    A+ E++       +   A    K+  + +E L
Sbjct: 129 FGLAEAYLKRSL-------AAQPQF-PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

Query: 445 PQA 447
              
Sbjct: 181 QAD 183

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 63/371 (16%), Positives = 106/371 (28%), Gaps = 83/371 (22%)

Query: 221 GRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280
           G   +             +   E+  E G++   LA    A L F+          +   
Sbjct: 1   GHMLQNNTDYPFEANNPYM-YHENPMEEGLSMLKLANLAEAALAFE-------AVCQAA- 51

Query: 281 KGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANM 340
                   E A   R LG+  +  E+   A+              L  + +      A  
Sbjct: 52  ----PEREE-AW--RSLGLTQAENEKDGLAIIAL---NHARM---LDPKDIAVHAALAVS 98

Query: 341 QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD 400
                    A+ +L+                       L +Q ++         A   +D
Sbjct: 99  HTNEHNANAALASLR---------------------AWLLSQPQYEQLGSVNLQADVDID 137

Query: 401 KKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGW 460
                               + + NE+    +LL   L +     Q   S       +G 
Sbjct: 138 D----------LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS-------LGV 180

Query: 461 LLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFA 520
           L  L+     A   L  A E L+    P    +   +N LGA     +RPQ A   +  A
Sbjct: 181 LYNLSNNYDSAAANLRRAVE-LR----PDDAQL---WNKLGATLANGNRPQEALDAYNRA 232

Query: 521 KDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI-------DAWESHGPSA 573
                + + P     +    N++ +YS+M  Y LA +   RAI                A
Sbjct: 233 -----LDINP---GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284

Query: 574 QDELREARRLL 584
              + +  R+L
Sbjct: 285 TRSMWDFFRML 295

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 32/338 (9%), Positives = 89/338 (26%), Gaps = 62/338 (18%)

Query: 200 EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE----LGVANRDL 255
            +   + H   +E       +    EA    +   +        +  E    LG+   + 
Sbjct: 14  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-----EREEAWRSLGLTQAEN 68

Query: 256 AEAFVAVLNFKEALPFGLKALEIHKKGLG-HNSVEVAHDRRLLGVIYSGLEEHQ------ 308
                       A+     A  +  K +  H +         L V ++            
Sbjct: 69  E-------KDGLAIIALNHARMLDPKDIAVHAA---------LAVSHTNEHNANAALASL 112

Query: 309 -KALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL---GKFEEAINTLKGVVRQTEKE 364
              L      +++      +   +  +++  +         ++ E    L   +     +
Sbjct: 113 RAWLLSQPQYEQLGSVNLQADVDID-DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

Query: 365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM 424
           ++    +  S+G        +  A   L  A         + P++ A  ++++     + 
Sbjct: 172 AQ----LHASLGVLYNLSNNYDSAAANLRRAV-------ELRPDD-AQLWNKLGATLANG 219

Query: 425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKE 484
           N  + A+    R L +     +  ++       +        +   A   L  A   ++ 
Sbjct: 220 NRPQEALDAYNRALDINPGYVRVMYN-------MAVSYSNMSQYDLAAKQLVRAIY-MQV 271

Query: 485 SFGPKHFGVGY-----IYNNLGAAYLELDRPQSAAQVF 517
                           +++        ++RP      +
Sbjct: 272 GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 36/295 (12%), Positives = 87/295 (29%), Gaps = 32/295 (10%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE----LGVANRDLAE 257
             P        L   +    +   A+  L     +               L V++ +   
Sbjct: 50  AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-----PKDIAVHAALAVSHTNEHN 104

Query: 258 AFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS 317
           A  A+ + +  L    +  ++    L  +      + +     ++   E+++      L 
Sbjct: 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR---TLL 161

Query: 318 QKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK 377
              L+   ++    +       +      ++ A   L+  V     +    A ++  +G 
Sbjct: 162 HAALE---MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD----AQLWNKLGA 214

Query: 378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRT 437
            L N  +  +A      A  +      I+P         +++ Y +M++++ A   L R 
Sbjct: 215 TLANGNRPQEALDAYNRA--L-----DINPGY-VRVMYNMAVSYSNMSQYDLAAKQLVRA 266

Query: 438 LALLEKLPQAQHSEGSVSARIGW-----LLLLTGKVPQAIPYLESAAERLKESFG 487
           + +              + R  W     LL +  +            E   + FG
Sbjct: 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 69/301 (22%)

Query: 173 FSDSLGYLSKANRMLGRLEE--EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHL 230
             ++   L        +       L  +   + P   AVH  LA   T       AL  L
Sbjct: 54  REEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKDIAVHAALAVSHTNEHNANAALASL 112

Query: 231 QKCLEIK-------ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL 283
           +  L  +        + L+ D     +  +     F A   ++E       ALE++    
Sbjct: 113 RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---- 168

Query: 284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS-QKVLKTWGLSSELLRAEIDAA--NM 340
             N  ++      LGV+Y+    +  A      + ++ ++        LR +       +
Sbjct: 169 -PNDAQLHAS---LGVLYNLSNNYDSAAA----NLRRAVE--------LRPDDAQLWNKL 212

Query: 341 QIAL---GKFEEAINTLKGVVRQTEKESETRAL--------VFISMGKALCNQEKFADAK 389
              L    + +EA+            ++  RAL        V  +M  +  N  ++  A 
Sbjct: 213 GATLANGNRPQEAL------------DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260

Query: 390 RCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH 449
           + L  A  I      +          E S +        +     +  L ++ +    + 
Sbjct: 261 KQLVRA--I-----YMQVGG-TTPTGEASREAT-----RSMWDFFRMLLNVMNRPDLVEL 307

Query: 450 S 450
           +
Sbjct: 308 T 308

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 21/201 (10%), Positives = 45/201 (22%), Gaps = 30/201 (14%)

Query: 372 FISMGKALCNQEKFADAKRCLEIACGI--------LDKKETISPEEVADAYSEISMQYES 423
            +    A     +   A         +               + E  +   +E+++ Y+ 
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 424 MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK 483
              ++ A    K  L           +          + +  G+   A+   E   +   
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVDCLEA-------CAEMQVCRGQEKDALRMYEKILQ--- 116

Query: 484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS 543
                 +         LG  Y      +    +    K +   S          A     
Sbjct: 117 --LEADNL---AANIFLGNYYYLTAEQEKKK-LETDYKKL---SSPTKMQ---YARYRDG 164

Query: 544 KAYSSMGSYTLAIEFQQRAID 564
            +      Y  A    Q+ I 
Sbjct: 165 LSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 26/231 (11%), Positives = 69/231 (29%), Gaps = 51/231 (22%)

Query: 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEAL 269
            L+  +     G+  +A+ + ++ + +               N D  E +          
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIAL---------------NIDRTEMY---------- 41

Query: 270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329
                    +   +  NS   +     L + Y     + KA       +++L+    +  
Sbjct: 42  ---------YWTNVDKNSEISSKLATELALAYKKNRNYDKAY---LFYKELLQ---KAPN 86

Query: 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAK 389
            +      A MQ+  G+ ++A+   + +++             I +G       +     
Sbjct: 87  NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA----NIFLGNYYYLTAEQEKK- 141

Query: 390 RCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440
              ++      KK +   +    A     +       +E A + L++ +  
Sbjct: 142 ---KLET--DYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 22/209 (10%), Positives = 54/209 (25%), Gaps = 36/209 (17%)

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLAL---------LEKLPQAQHSEGSVSARIGWL 461
            D   +         +   A+S  ++T+AL            + +       ++  +   
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK 521
                   +A  + +   +       P +              +   + + A +++    
Sbjct: 64  YKKNRNYDKAYLFYKELLQ-----KAPNNV---DCLEACAEMQVCRGQEKDALRMYEKI- 114

Query: 522 DIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL-AIEFQQRAI-------DAWESHGPS- 572
               + L   +     A   L   Y          +E   + +        A    G S 
Sbjct: 115 ----LQLEADNLA---ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167

Query: 573 -AQDELREARRLLEQ-LKIKASGASINQL 599
                  +AR  L++ +    S  +   L
Sbjct: 168 LFTTRYEKARNSLQKVILRFPSTEAQKTL 196

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 25/199 (12%)

Query: 163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR 222
             SA     +   ++ Y  +   +     E     +V+    I   +  ELA        
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 223 REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK- 281
            ++A    ++ L+                    AE  V     K+AL    K L++    
Sbjct: 70  YDKAYLFYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

Query: 282 GLGHNSVEVAHDRRLLG-VIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANM 340
              +           LG   Y   E+ +K LE +    K L      +++  A       
Sbjct: 122 LAANIF---------LGNYYYLTAEQEKKKLETDY---KKLS---SPTKMQYARYRDGLS 166

Query: 341 QIALGKFEEAINTLKGVVR 359
           ++   ++E+A N+L+ V+ 
Sbjct: 167 KLFTTRYEKARNSLQKVIL 185

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.7 bits (143), Expect = 9e-10
 Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 35/226 (15%)

Query: 338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397
                  G +E+A       + + ++++      +I+    L +  +   A    + A  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAI----PYINFANLLSSVNELERALAFYDKA-- 83

Query: 398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSAR 457
           +      +     A AY      Y     ++ A  + ++ L    +     +        
Sbjct: 84  L-----ELDSSA-ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM------- 130

Query: 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
           +G +L+   +   A+PYL+ A E L                  G           A  + 
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVE-LN----ENDTEA---RFQFGMCLANEGMLDEA--LS 180

Query: 518 AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
            FA         P HA   +A  N    Y+   +   A+E   +AI
Sbjct: 181 QFAAVT---EQDPGHA---DAFYNAGVTYAYKENREKALEMLDKAI 220

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 31/209 (14%), Positives = 63/209 (30%), Gaps = 35/209 (16%)

Query: 344 LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE 403
           + + E A+      +      +      +   G     +E + +AK   E A  +     
Sbjct: 70  VNELERALAFYDKALELDSSAAT----AYYGAGNVYVVKEMYKEAKDMFEKA--L----- 118

Query: 404 TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLL 463
               E   D +  +      + + + A+  L+R + L E   +A+          G  L 
Sbjct: 119 RAGMEN-GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ-------FGMCLA 170

Query: 464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523
             G + +A+    +  E       P H      + N G  Y   +  + A ++   A   
Sbjct: 171 NEGMLDEALSQFAAVTE-QD----PGHA---DAFYNAGVTYAYKENREKALEMLDKA--- 219

Query: 524 MDVSLGPHHADSIEACQNLSKAYSSMGSY 552
             + + P H     A             +
Sbjct: 220 --IDIQPDHM---LALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 33/224 (14%), Positives = 65/224 (29%), Gaps = 38/224 (16%)

Query: 340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGIL 399
           M  +      +   +        + S   ++              +  A      A    
Sbjct: 1   MGSSHHHHHHSSGLV-------PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAI--- 50

Query: 400 DKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIG 459
                 + E+ A  Y   +    S+NE E A++   + L L      A +  G+V     
Sbjct: 51  ----EENKED-AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV----- 100

Query: 460 WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF 519
              ++     +A    E A        G ++     ++  LG   ++L++P+ A      
Sbjct: 101 --YVVKEMYKEAKDMFEKALR-----AGMENG---DLFYMLGTVLVKLEQPKLALPYLQR 150

Query: 520 AKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
           A     V L  +     EA        ++ G    A+       
Sbjct: 151 A-----VELNENDT---EARFQFGMCLANEGMLDEALSQFAAVT 186

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 41/259 (15%), Positives = 79/259 (30%), Gaps = 47/259 (18%)

Query: 201 DIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE----LGVANRDLA 256
            +  +            +  G  E+A E   K +E       ++              + 
Sbjct: 20  HMASMTGGQ---QMGRGSEFGDYEKAAEAFTKAIEEN-----KEDAIPYINFANLLSSVN 71

Query: 257 EAFVAVLNFKEALPFGLKALEIHKK-GLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE 315
           E        + AL F  KALE+       +            G +Y   E +++A +   
Sbjct: 72  E-------LERALAFYDKALELDSSAATAYYG---------AGNVYVVKEMYKEAKDM-- 113

Query: 316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISM 375
             +K L+      E          + + L + + A+  L+  V   E ++E         
Sbjct: 114 -FEKALR---AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA----RFQF 165

Query: 376 GKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK 435
           G  L N+    +A                  P   ADA+    + Y      E A+ +L 
Sbjct: 166 GMCLANEGMLDEALSQFAAV--T-----EQDPGH-ADAFYNAGVTYAYKENREKALEMLD 217

Query: 436 RTLALLEKLPQAQHSEGSV 454
           + + +      A H++  +
Sbjct: 218 KAIDIQPDHMLALHAKKLL 236

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 38/226 (16%), Positives = 66/226 (29%), Gaps = 45/226 (19%)

Query: 180 LSKANRMLGRLEEEGLGGSVED------IKPIMHAVHLELANVKTAMGRREEALEHLQKC 233
                   G  E+     + E               ++  AN+ +++   E AL    K 
Sbjct: 29  QMGRGSEFGDYEK-----AAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKA 83

Query: 234 LEIKELILEEDSRE----LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE 289
           LE+        +       G               +KEA     KAL       G  + +
Sbjct: 84  LELD-----SSAATAYYGAGNVYVVKEM-------YKEAKDMFEKALRA-----GMENGD 126

Query: 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEE 349
                   G +   LE+ + AL      Q+ ++   L+     A           G  +E
Sbjct: 127 -LFYML--GTVLVKLEQPKLALPY---LQRAVE---LNENDTEARFQFGMCLANEGMLDE 177

Query: 350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395
           A++    V  Q    ++     F + G     +E    A   L+ A
Sbjct: 178 ALSQFAAVTEQDPGHAD----AFYNAGVTYAYKENREKALEMLDKA 219

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 47/331 (14%), Positives = 100/331 (30%), Gaps = 51/331 (15%)

Query: 297 LGVIYSGLEEHQKALEQ-NELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLK 355
             ++    EE +  L++   L  ++        E    E      Q    + E+ +  + 
Sbjct: 33  GSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQM- 91

Query: 356 GVVRQTEKESETRALVFISMGKALCNQEKF-ADAKRCLEIACGILDKKETISPEEVADAY 414
               +    ++  A   +  GKAL     +  +A+  L  A  +          E+ +A+
Sbjct: 92  ---EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAW 140

Query: 415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL--LLTGKVPQAI 472
           +++   Y    +  +A +     L   +     Q+        +  +L  L T    +  
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQN--------LSMVLRQLQTDSGDEHS 192

Query: 473 PYLESAAERLKESFG--PKHFGVGYIYNNLGAAYL--------ELDRPQSAAQVFAFAKD 522
            ++  +  + K +          G  +  LG AYL             Q A   +A A  
Sbjct: 193 RHVMDSVRQAKLAVQMDVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA-- 247

Query: 523 IMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI-------DAWESHGP--SA 573
                +    + + +   N +  +    SY  A+E   +A        +  +        
Sbjct: 248 ---EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304

Query: 574 QDELREARRLLEQLKIKASGASINQLPTKAL 604
              L        + K K   + +  L    L
Sbjct: 305 LSRLTSLLESKGKTKPKKLQSMLGSLRPAHL 335

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 30/284 (10%), Positives = 74/284 (26%), Gaps = 55/284 (19%)

Query: 160 LQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG--GSVEDIKPIMHAVHLELANVK 217
           LQ M     S +  + +L    KA  +      E          ++P +     +L  V 
Sbjct: 88  LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY 147

Query: 218 TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLA--EAFVAVLNFKEALPFGLKA 275
              G    A       L   +   +   + L +  R L          +  +++     A
Sbjct: 148 WKKGDVTSAHTCFSGALTHCK--NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205

Query: 276 LEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEI 335
           +++             +   +LG  Y  L                               
Sbjct: 206 VQMDV-----LDGRSWY---ILGNAYLSL------------------------------- 226

Query: 336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395
              N        ++A++       + ++++ +   + ++       +E + +A      A
Sbjct: 227 -YFNTGQNPKISQQALSAYAQAE-KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284

Query: 396 CGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439
                    + P    +         E ++   + +    +T  
Sbjct: 285 A-------ALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKTKP 320

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 6e-09
 Identities = 59/421 (14%), Positives = 114/421 (27%), Gaps = 67/421 (15%)

Query: 175 DSLGYLSKANRMLGRLEEEGLG-GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233
            ++   +   + L  ++           + P            K A+   +  L  L + 
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQA 252

Query: 234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD 293
             +          +  VA         A+   +  LP   +A       L  + V     
Sbjct: 253 HGLP--------PDQVVAIASNIGGKQALETVQRLLPVLCQAHG-----LTPDQVVAIAS 299

Query: 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINT 353
               G     LE  Q+ L          +  GL+ + + A       + AL   +  +  
Sbjct: 300 H---GGGKQALETVQRLLPVLC------QAHGLTPDQVVAIASHDGGKQALETVQRLLPV 350

Query: 354 LKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA 413
           L     Q    +  + +   S G      E        L  A G       ++P++V   
Sbjct: 351 L----CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG-------LTPDQVVAI 399

Query: 414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIP 473
            S  +   +++   +  + +L +   L      A  S       +         V + +P
Sbjct: 400 AS--NGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL-------ETVQRLLP 450

Query: 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533
            L      L     P          +       L+  Q    V   A  +          
Sbjct: 451 VLCQTHG-LT----PAQVVA---IASHDGGKQALETVQQLLPVLCQAHGL--------TP 494

Query: 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAI-------DAWESHGPSAQDELREARRLLEQ 586
           D + A  +      ++ +    +    +A         A  S+G   +  L   +RLL  
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNG-GGKQALETVQRLLPV 553

Query: 587 L 587
           L
Sbjct: 554 L 554

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 57/421 (13%), Positives = 107/421 (25%), Gaps = 61/421 (14%)

Query: 173 FSDSLGYLSKANRMLGRLEEEGLG-GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQ 231
              ++       + L  ++           + P            K A+   +  L  L 
Sbjct: 259 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLC 318

Query: 232 KCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA 291
           +   +          +  VA         A+   +  LP   +A  +       + V   
Sbjct: 319 QAHGLT--------PDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-----DQVVAI 365

Query: 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI 351
                 G     LE  Q+ L          +  GL+ + + A       Q AL   +  +
Sbjct: 366 ASN---GGGKQALETVQRLLPVLC------QAHGLTPDQVVAIASNGGKQ-ALETVQRLL 415

Query: 352 NTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVA 411
             L     Q    +  + +   S        E          +    L +   ++P +  
Sbjct: 416 PVL----CQAHGLTPDQVVAIASHDGGKQALETVQRL-----LPV--LCQTHGLTPAQ-V 463

Query: 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQA 471
            A +      +++   +  + +L +   L      A  S                 V + 
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG-------KQALATVQRL 516

Query: 472 IPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531
           +P L  A         P          + G     L+  Q         +      L P 
Sbjct: 517 LPVLCQAHG-----LTPDQVV---AIASNGGGKQALETVQRLLP--VLCQAH---GLTPD 563

Query: 532 HADSI----EACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQL 587
              +I       Q L      +     A    Q  + A  S+    +  L   +RLL  L
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI-GGKQALETVQRLLPVL 622

Query: 588 K 588
            
Sbjct: 623 C 623

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 52/375 (13%), Positives = 94/375 (25%), Gaps = 61/375 (16%)

Query: 201 DIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV 260
           ++ P            K A+   +  L  L +   +                     A  
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL---------------TPAQVVAIA 230

Query: 261 AVLNFKEALPFGLKALEIHKKGLGHNSVEV-AHDRRLLGVIYSGLEEHQKALEQNELSQK 319
           +    K+AL    + L +  +  G    +V A            LE  Q+ L       +
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASN--IGGKQALETVQRLLPV---LCQ 285

Query: 320 VLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKAL 379
                GL+ + + A       + AL   +  +  L      T  +         S     
Sbjct: 286 AH---GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA----IASHDGGK 338

Query: 380 CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439
              E        L  A G       ++P++   A +      +++   +  + +L +   
Sbjct: 339 QALETVQRLLPVLCQAHG-------LTPDQ-VVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 440 LLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN 499
           L      A  S G   A           V + +P L  A         P          +
Sbjct: 391 LTPDQVVAIASNGGKQA--------LETVQRLLPVLCQAHG-----LTPDQVVA---IAS 434

Query: 500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSI----EACQNLSKAYSSMGSYTLA 555
                  L+  Q         +      L P    +I       Q L      +     A
Sbjct: 435 HDGGKQALETVQRLLP--VLCQTH---GLTPAQVVAIASHDGGKQALETVQQLLPVLCQA 489

Query: 556 IEFQQRAIDAWESHG 570
                  + A  S+ 
Sbjct: 490 HGLTPDQVVAIASNI 504

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 52/395 (13%), Positives = 103/395 (26%), Gaps = 69/395 (17%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
           + P            K A+   +  L  L +   +                 D   A  +
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL---------------TPDQVVAIAS 401

Query: 262 VLNFKEALPFGLKALEIHKKGLGHNSVEV-AHDRRLLGVIYSGLEEHQKALEQNELSQKV 320
               K+AL    + L +  +  G    +V A            LE  Q+ L       + 
Sbjct: 402 -NGGKQALETVQRLLPVLCQAHGLTPDQVVAIASH--DGGKQALETVQRLLPV---LCQT 455

Query: 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC 380
               GL+   + A       + AL   ++ +  L     Q    +  + +   S      
Sbjct: 456 H---GLTPAQVVAIASHDGGKQALETVQQLLPVL----CQAHGLTPDQVVAIASNIGGKQ 508

Query: 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440
                      L  A G+       +P++   A +      +++   +  + +L +   L
Sbjct: 509 ALATVQRLLPVLCQAHGL-------TPDQ-VVAIASNGGGKQALETVQRLLPVLCQAHGL 560

Query: 441 LEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL 500
                 A  S G     +         V + +P L  A                    + 
Sbjct: 561 TPDQVVAIASNGGGKQALE-------TVQRLLPVLCQAHG-----LTQVQVVA---IASN 605

Query: 501 GAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQ 560
                 L+  Q    V   A               + A  +      ++ +    +    
Sbjct: 606 IGGKQALETVQRLLPVLCQAHG--------LTPAQVVAIASHDGGKQALETVQRLLPVLC 657

Query: 561 RAI-------DAWESHGPS--AQDELREARRLLEQ 586
           +A         A  S+G    A + ++    +L Q
Sbjct: 658 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 55/366 (15%), Positives = 98/366 (26%), Gaps = 64/366 (17%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
           + P            K A+   ++ L  L +   +          +  VA         A
Sbjct: 458 LTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT--------PDQVVAIASNIGGKQA 509

Query: 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321
           +   +  LP   +A  +       + V  A      G     LE  Q+ L          
Sbjct: 510 LATVQRLLPVLCQAHGLT-----PDQVV-AIASN--GGGKQALETVQRLLPVLC------ 555

Query: 322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN 381
           +  GL+ + + A       + AL   +  +  L      T+ +     +   S       
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ----VVAIASNIGGKQA 611

Query: 382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALL 441
            E        L  A G+       +P +   A +      +++   +  + +L +   L 
Sbjct: 612 LETVQRLLPVLCQAHGL-------TPAQ-VVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 442 EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLG 501
                A  S G     +         V + +P L  A   L      +         +  
Sbjct: 664 PDQVVAIASNGGGKQALE-------TVQRLLPVLCQAHG-LT----QEQVVA---IASNN 708

Query: 502 AAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR 561
                L+  Q    V   A       L P              A +S G    A+E  QR
Sbjct: 709 GGKQALETVQRLLPVLCQA-----HGLTPDQVV----------AIASNGGGKQALETVQR 753

Query: 562 AIDAWE 567
            +    
Sbjct: 754 LLPVLC 759

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 48/365 (13%), Positives = 97/365 (26%), Gaps = 64/365 (17%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
           +  +           K A+   +  L  L +   +             VA         A
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT--------PAQVVAIASHDGGKQA 645

Query: 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321
           +   +  LP   +A       L  + V  A      G     LE  Q+ L          
Sbjct: 646 LETVQRLLPVLCQAHG-----LTPDQVV-AIASN--GGGKQALETVQRLLPVLC------ 691

Query: 322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN 381
           +  GL+ E + A       + AL   +  +  L     Q    +  + +   S G     
Sbjct: 692 QAHGLTQEQVVAIASNNGGKQALETVQRLLPVL----CQAHGLTPDQVVAIASNGGGKQA 747

Query: 382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALL 441
            E        ++    +L +   ++P +   A +      +++   +  + +L +   L 
Sbjct: 748 LET-------VQRLLPVLCQAHGLTPAQ-VVAIASNIGGKQALETVQRLLPVLCQDHGLT 799

Query: 442 EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLG 501
                A              +       QA+  ++     L ++ G        +  +  
Sbjct: 800 LAQVVA--------------IASNIGGKQALETVQRLLPVLCQAHG--------LTQDQV 837

Query: 502 AAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR 561
            A       + A +              P          +   A +S      A+E  QR
Sbjct: 838 VAIASNIGGKQALETVQRL--------LPVLCQDHGLTPDQVVAIASNIGGKQALETVQR 889

Query: 562 AIDAW 566
            +   
Sbjct: 890 LLPVL 894

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 47/363 (12%), Positives = 101/363 (27%), Gaps = 60/363 (16%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
           + P            K A+   +  L  L +   +                ++   A  +
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL---------------TQEQVVAIAS 706

Query: 262 VLNFKEALPFGLKALEIHKKGLGHNSVEV-AHDRRLLGVIYSGLEEHQKALEQNELSQKV 320
               K+AL    + L +  +  G    +V A      G     LE  Q+ L         
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN--GGGKQALETVQRLLPVLC----- 759

Query: 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC 380
            +  GL+   + A       + AL   +  +  L      T           ++   A+ 
Sbjct: 760 -QAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT-----------LAQVVAIA 807

Query: 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440
           +      A   ++    +L +   ++ ++   A +      +++   +  + +L +   L
Sbjct: 808 SNIGGKQALETVQRLLPVLCQAHGLTQDQ-VVAIASNIGGKQALETVQRLLPVLCQDHGL 866

Query: 441 LEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL 500
                 A              +       QA+  ++     L +  G     V  I +N 
Sbjct: 867 TPDQVVA--------------IASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNG 912

Query: 501 GAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQ 560
           G   LE    Q    V      +          D + A  + S    ++ +    +    
Sbjct: 913 GKQALETV--QRLLPVLCQDHGL--------TPDQVVAIASNSGGKQALETVQRLLPVLC 962

Query: 561 RAI 563
           +  
Sbjct: 963 QDH 965

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.9 bits (139), Expect = 8e-09
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 23/153 (15%)

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470
           AD+ + ++         E A+ L ++ L +  +   A  +       +  +L   GK+ +
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN-------LASVLQQQGKLQE 61

Query: 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530
           A+ + + A         P        Y+N+G    E+   Q A Q +  A     + + P
Sbjct: 62  ALMHYKEAIR-----ISPTFA---DAYSNMGNTLKEMQDVQGALQCYTRA-----IQINP 108

Query: 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
             A   +A  NL+  +   G+   AI   + A+
Sbjct: 109 AFA---DAHSNLASIHKDSGNIPEAIASYRTAL 138

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 25/137 (18%)

Query: 459 GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518
             +    G + +A+     A E       P+       ++NL +   +  + Q A   + 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALE-----VFPEFAAA---HSNLASVLQQQGKLQEALMHYK 67

Query: 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI-------DAWESHGP 571
            A     + + P  A   +A  N+      M     A++   RAI       DA  +   
Sbjct: 68  EA-----IRISPTFA---DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119

Query: 572 S--AQDELREARRLLEQ 586
                  + EA      
Sbjct: 120 IHKDSGNIPEAIASYRT 136

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 9e-05
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS 547
           P H       NNL     E    + A +++  A     + + P  A    A  NL+    
Sbjct: 6   PTHADS---LNNLANIKREQGNIEEAVRLYRKA-----LEVFPEFA---AAHSNLASVLQ 54

Query: 548 SMGSYTLAIEFQQRAI 563
             G    A+   + AI
Sbjct: 55  QQGKLQEALMHYKEAI 70

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 31/195 (15%)

Query: 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE 428
            + +   G +     +++ A   LE               +  D    + + Y      +
Sbjct: 8   QVYYRDKGISHAKAGRYSQAVMLLEQVY-------DADAFD-VDVALHLGIAYVKTGAVD 59

Query: 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488
               LL+R+LA      +           +G   +   K   A+P L   AE       P
Sbjct: 60  RGTELLERSLADAPDNVKVATV-------LGLTYVQVQKYDLAVPLLIKVAE-AN----P 107

Query: 489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS 548
            +F V      LG A   L R   A   F  A     + L P+     +  + ++ +Y  
Sbjct: 108 INFNV---RFRLGVALDNLGRFDEAIDSFKIA-----LGLRPNEG---KVHRAIAFSYEQ 156

Query: 549 MGSYTLAIEFQQRAI 563
           MG +  A+   ++A 
Sbjct: 157 MGRHEEALPHFKKAN 171

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 23/157 (14%)

Query: 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG 466
            +     Y +  + +     +  A+ LL++               G          + TG
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIA-------YVKTG 56

Query: 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDV 526
            V +    LE +         P +  V      LG  Y+++ +   A  V    K     
Sbjct: 57  AVDRGTELLERSLA-DA----PDNVKV---ATVLGLTYVQVQKYDLA--VPLLIKVA--- 103

Query: 527 SLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
              P +         L  A  ++G +  AI+  + A+
Sbjct: 104 EANPINF---NVRFRLGVALDNLGRFDEAIDSFKIAL 137

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 9e-04
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 50/200 (25%)

Query: 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE----LGVANRDLAEAFVAVL 263
             + +        GR  +A+  L++  +           +    LG+A            
Sbjct: 9   VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----AFDVDVALHLGIAYVKTG------- 56

Query: 264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323
                     ++L         ++V+       LG+ Y  ++++  A+    L  KV + 
Sbjct: 57  AVDRGTELLERSLADA-----PDNVK-VATV--LGLTYVQVQKYDLAV---PLLIKVAE- 104

Query: 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL--------VFISM 375
              +                LG+F+EAI++ K             AL        V  ++
Sbjct: 105 --ANPINFNVRFRLGVALDNLGRFDEAIDSFK------------IALGLRPNEGKVHRAI 150

Query: 376 GKALCNQEKFADAKRCLEIA 395
             +     +  +A    + A
Sbjct: 151 AFSYEQMGRHEEALPHFKKA 170

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 475 LESAAERLKE--SFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH 532
           +++  ERL+   + G  +  +      LG  Y E ++  +A      A     +   P +
Sbjct: 1   MQAITERLEAMLAQGTDNMLL---RFTLGKTYAEHEQFDAALPHLRAA-----LDFDPTY 52

Query: 533 ADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG-PSAQDELREARRLLEQ 586
           +    A + L K     G    A +  +  + A +S G      EL+   R L +
Sbjct: 53  S---VAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 76/343 (22%)

Query: 224 EEALEHLQKCLEIKELILEEDSR---ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280
           +       K  + +E     D     E G+      +   AVL F+        A++   
Sbjct: 43  DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE-------AAVQQD- 94

Query: 281 KGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANM 340
                  +E A   + LG   +  E+   A+      ++ L+   L  +   A +  A  
Sbjct: 95  ----PKHME-AW--QYLGTTQAENEQELLAISAL---RRCLE---LKPDNQTALMALAVS 141

Query: 341 QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD 400
                   +A   L+                       L     +A           +  
Sbjct: 142 FTNESLQRQACEILR---------------------DWLRYTPAYAHL---------VTP 171

Query: 401 KKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGW 460
            +E      +  +   +     S + F     L    + L           G     +G 
Sbjct: 172 AEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG-----LGV 225

Query: 461 LLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFA 520
           L  L+G+  +A+    +A   ++    P  +    ++N LGA     ++ + A   +  A
Sbjct: 226 LFNLSGEYDKAVDCFTAALS-VR----PNDY---LLWNKLGATLANGNQSEEAVAAYRRA 277

Query: 521 KDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
                + L P +     +  NL  +  ++G++  A+E    A+
Sbjct: 278 -----LELQPGYI---RSRYNLGISCINLGAHREAVEHFLEAL 312

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 46/326 (14%), Positives = 94/326 (28%), Gaps = 65/326 (19%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
             P        L   +    +   A+  L++CLE+K             A   LA +F  
Sbjct: 93  QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT--------ALMALAVSFTN 144

Query: 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321
               ++A       L                     G   +GL   ++ L          
Sbjct: 145 ESLQRQACEILRDWLRYTPA------YAHLVTPAEEGAGGAGLGPSKRIL---------- 188

Query: 322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN 381
                               ++   F E        VR     +     V   +G     
Sbjct: 189 -----------------GSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNL 229

Query: 382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALL 441
             ++  A  C   A        ++ P +    ++++     + N+ E A++  +R L L 
Sbjct: 230 SGEYDKAVDCFTAAL-------SVRPND-YLLWNKLGATLANGNQSEEAVAAYRRALELQ 281

Query: 442 EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY----IY 497
               +++++       +G   +  G   +A+ +   A   ++          G     I+
Sbjct: 282 PGYIRSRYN-------LGISCINLGAHREAVEHFLEALN-MQRKSRGPRGEGGAMSENIW 333

Query: 498 NNLGAAYLELDRPQSAAQVFAFAKDI 523
           + L  A   L +  +     A A+D+
Sbjct: 334 STLRLALSMLGQSDAYGA--ADARDL 357

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 53.6 bits (128), Expect = 6e-08
 Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 4/156 (2%)

Query: 360 QTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM 419
           +   E +        +   +  +  +      L+    +  +   I   +     + I+ 
Sbjct: 106 EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL--LNQQLTGIDVYQNLYIENAIAN 163

Query: 420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAA 479
            Y      +  I L ++ L  LE L   +  +  V       L L  +  +++  +  A 
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223

Query: 480 ERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQ 515
           E            +G +Y   G    +L+  ++  +
Sbjct: 224 EISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIE 257

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 4/189 (2%)

Query: 376 GKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK 435
           G    + +        L+I      +    S  E    + +  +       ++   + + 
Sbjct: 40  GAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVW 99

Query: 436 RTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY 495
             L   E  P+ Q         +   +L        I  L+    +         +   Y
Sbjct: 100 NELKKEEYHPEFQQ-FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQNLY 156

Query: 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA 555
           I N +   Y E    +    +F      ++ +L  +    ++   N +KA      Y  +
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLE-ALHDNEEFDVKVRYNHAKALYLDSRYEES 215

Query: 556 IEFQQRAID 564
           +    +AI+
Sbjct: 216 LYQVNKAIE 224

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 1/116 (0%)

Query: 218 TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALE 277
            A  + E+ L   Q  +      L + +           +A + +   +EAL +G + +E
Sbjct: 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357

Query: 278 IHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK-TWGLSSELLR 332
            ++     +          +G +        +A++   L+  +++ T G    L+ 
Sbjct: 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 45.3 bits (106), Expect = 4e-05
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 4/164 (2%)

Query: 390 RCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH 449
            C        D       E+V     E   + E +        +L    A++    +   
Sbjct: 263 DCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP 322

Query: 450 SEGSVSARIGWLLLLT----GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL 505
                  ++    +      G + +A+ Y     E  +  F   H   G     +G   L
Sbjct: 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382

Query: 506 ELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM 549
                  A +    A DIM V+ G  H+   +    L +  +++
Sbjct: 383 HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 193 EGLGGSVEDIKPIMHAVHLE----LANVKTAMGRREEALEHLQKCLEIKELILEEDSREL 248
           + +  S  +  P ++   L+      +    +G  EEAL +  + +E   +         
Sbjct: 311 QAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370

Query: 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQ 308
           GV    + +  +    F +A+     A +I +   G     +     L+ ++       +
Sbjct: 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI---EDLILLLEECDANIR 427

Query: 309 KA 310
            +
Sbjct: 428 AS 429

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 2/125 (1%)

Query: 466 GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525
            K  Q +   ++      E     +     + +    A + L   + A        +   
Sbjct: 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR 360

Query: 526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE-SHGPSAQDELREARRLL 584
           +     H         + K     G +  A++  + A D    +HG      + +   LL
Sbjct: 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS-LIEDLILLL 419

Query: 585 EQLKI 589
           E+   
Sbjct: 420 EECDA 424

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 29/190 (15%), Positives = 55/190 (28%), Gaps = 41/190 (21%)

Query: 401 KKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARI-- 458
            K     +E  DAY ++ + Y      E A   L++ L +      A  +   V      
Sbjct: 27  LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME 86

Query: 459 -------------------------GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV 493
                                    G  L    +  +A   L  A    +++  P+   V
Sbjct: 87  PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA---SQDTLYPERSRV 143

Query: 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYT 553
              + NLG   L++ +P  A + F  +     + L  +          ++        Y 
Sbjct: 144 ---FENLGLVSLQMKKPAQAKEYFEKS-----LRLNRNQP---SVALEMADLLYKEREYV 192

Query: 554 LAIEFQQRAI 563
            A ++     
Sbjct: 193 PARQYYDLFA 202

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 36/249 (14%), Positives = 79/249 (31%), Gaps = 34/249 (13%)

Query: 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA 261
            +      +++L       G  E+A   L+K LEI              A+  LA  F  
Sbjct: 32  GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQT 83

Query: 262 VLNFKEALPFGLKALEIHKK-GLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320
            +  K A     KAL    +     N+          G      + +++A ++     + 
Sbjct: 84  EMEPKLADEEYRKALASDSRNARVLNN---------YGGFLYEQKRYEEAYQR---LLEA 131

Query: 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC 380
            +   L  E  R   +   + + + K  +A         ++ + +  +  V + M   L 
Sbjct: 132 SQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYF----EKSLRLNRNQPSVALEMADLLY 186

Query: 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440
            + ++  A++  ++             +  A +        +   + +TA S   +   L
Sbjct: 187 KEREYVPARQYYDLF-------AQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

Query: 441 LEKLPQAQH 449
                + Q 
Sbjct: 239 YPGSLEYQE 247

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 41/318 (12%), Positives = 91/318 (28%), Gaps = 48/318 (15%)

Query: 274 KALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRA 333
           + +   ++    +          L   Y    ++   L++ + S         S+  L+A
Sbjct: 17  QCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---------SAPELQA 67

Query: 334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLE 393
               A    +  + +  +  L   +        T     +         +    A R L 
Sbjct: 68  VRMFAEYLASHSRRDAIVAELDREMS--RSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 394 IACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453
               +             +  +        ++  + A   LK+     E     Q +   
Sbjct: 126 QGDSL-------------ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172

Query: 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSA 513
           VS   G       K+  A    +  A++   +          + N   A ++   R ++A
Sbjct: 173 VSLAAG-----GEKLQDAYYIFQEMADKCSPTLL--------LLNGQAACHMAQGRWEAA 219

Query: 514 AQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI-EFQQRAIDAWESHGPS 572
             V   A     +     H +++    NL      +G        +  +  DA  SH P 
Sbjct: 220 EGVLQEA-----LDKDSGHPETL---INLVVLSQHLGKPPEVTNRYLSQLKDAHRSH-PF 270

Query: 573 AQDELREARRLLEQLKIK 590
            ++  R      ++L ++
Sbjct: 271 IKE-YRAKENDFDRLVLQ 287

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 41/268 (15%), Positives = 72/268 (26%), Gaps = 57/268 (21%)

Query: 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFA 386
           S+   R     A       + E  +  ++ ++       + RA +    G    +    A
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 387 DAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446
            A+     A         I P+   + ++ + +       F+ A       L L      
Sbjct: 61  LARNDFSQAL-------AIRPDM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112

Query: 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE 506
           A  +        G  L   G+   A   L +  +       P      +    L  A  +
Sbjct: 113 AHLN-------RGIALYYGGRDKLAQDDLLAFYQ-DD----PND---PFRSLWLYLAEQK 157

Query: 507 LDRPQSAAQVF-AFAKDIMD------------------------------VSLGPHHADS 535
           LD  Q+   +   F K   +                               SL  H +  
Sbjct: 158 LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLS-- 215

Query: 536 IEACQNLSKAYSSMGSYTLAIEFQQRAI 563
            E    L K Y S+G    A    + A+
Sbjct: 216 -ETNFYLGKYYLSLGDLDSATALFKLAV 242

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 44/313 (14%), Positives = 92/313 (29%), Gaps = 61/313 (19%)

Query: 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR---ELGVANRDLAEAFVAVLNFK 266
              LA       ++E  L  +++ L  + L  +E ++   E GV    L    +A  +F 
Sbjct: 8   SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67

Query: 267 EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL 326
                  +AL I       +  E   +   LG+  +       A E  +    VL+   L
Sbjct: 68  -------QALAIR-----PDMPE-VFNY--LGIYLTQAGNFDAAYEAFD---SVLE---L 106

Query: 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET---RALVFISMGKALCNQE 383
                 A ++        G+ + A + L    +    +        L    + +    ++
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE----KQ 162

Query: 384 KFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNE---FETAISLLKRTLAL 440
                K+  E +            ++    ++ +     +++E    E   +      +L
Sbjct: 163 AKEVLKQHFEKS------------DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL 210

Query: 441 LEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL 500
            E L +           +G   L  G +  A    + A           +F     +   
Sbjct: 211 AEHLSETNFY-------LGKYYLSLGDLDSATALFKLAVA-NN----VHNFVE---HRYA 255

Query: 501 GAAYLELDRPQSA 513
                 L + Q  
Sbjct: 256 LLELSLLGQDQDD 268

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 46/320 (14%), Positives = 85/320 (26%), Gaps = 60/320 (18%)

Query: 251 ANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKA 310
            +  LA      L  +  L    + L   +        ++ ++R   GV+Y  L     A
Sbjct: 7   KSEVLAVPLQPTLQQEVILARMEQILAS-RALTDDERAQLLYER---GVLYDSLGLRALA 62

Query: 311 LEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL 370
                   + L    +  ++              G F+ A             E+    L
Sbjct: 63  RNDFS---QALA---IRPDMPEVFNYLGIYLTQAGNFDAAY------------EAFDSVL 104

Query: 371 --------VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE 422
                     ++ G AL    +   A+  L              P +       + +  +
Sbjct: 105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY-------QDDPND-PFRSLWLYLAEQ 156

Query: 423 SMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL 482
            ++E +    L +      EK  + Q     V   +G +      + +           L
Sbjct: 157 KLDEKQAKEVLKQH----FEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTS-L 210

Query: 483 KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNL 542
            E               LG  YL L    SA  +F  A     V+   H+       +  
Sbjct: 211 AEHLS-------ETNFYLGKYYLSLGDLDSATALFKLA-----VANNVHNF---VEHRYA 255

Query: 543 SKAYSSMGSYTLAIE-FQQR 561
               S +G     +    Q+
Sbjct: 256 LLELSLLGQDQDDLAESDQQ 275

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 36/262 (13%), Positives = 64/262 (24%), Gaps = 55/262 (20%)

Query: 183 ANRMLGRLEEEGLGGSVED------IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236
               LG         +  D      I+P M  V   L    T  G  + A E     LE+
Sbjct: 52  LYDSLGLRAL-----ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106

Query: 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRL 296
                         A+ +   A       K A    L   +        N    +     
Sbjct: 107 DP--------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-----NDPFRSLWL-- 151

Query: 297 LGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG------KFEEA 350
             +    L+E Q      +  +K  K           +     ++  LG        E  
Sbjct: 152 -YLAEQKLDEKQAKEVLKQHFEKSDK----------EQWGWNIVEFYLGNISEQTLMERL 200

Query: 351 INTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410
                      E  SET       +GK   +      A    ++A          +    
Sbjct: 201 KADATDNTSLAEHLSET----NFYLGKYYLSLGDLDSATALFKLAV-------ANNVHN- 248

Query: 411 ADAYSEISMQYESMNEFETAIS 432
              +    ++   + + +  ++
Sbjct: 249 FVEHRYALLELSLLGQDQDDLA 270

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 51/238 (21%)

Query: 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL-------VFISMGKALCNQEKF 385
            E    N      +F+EAI            E   +A           +   A   + ++
Sbjct: 7   KEKAEGNKFYKARQFDEAI------------EHYNKAWELHKDITYLNNRAAAEYEKGEY 54

Query: 386 ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445
             A   L  A  +          E+   Y  IS  +  +      +  LK+T+   +K  
Sbjct: 55  ETAISTLNDA--V-----EQGR-EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106

Query: 446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL 505
                      R   +L       + +   E+ A        P+           G  Y 
Sbjct: 107 TEH--------RTADILTKLRNAEKELKKAEAEAY-----VNPEKA---EEARLEGKEYF 150

Query: 506 ELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
                 +A + +        +   P  A       N + A + + S+  AI    +AI
Sbjct: 151 TKSDWPNAVKAYTEM-----IKRAPEDA---RGYSNRAAALAKLMSFPEAIADCNKAI 200

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 35/221 (15%), Positives = 62/221 (28%), Gaps = 36/221 (16%)

Query: 344 LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE 403
            G++E AI+TL   V   E+  E RA  +  + K+             L+       K  
Sbjct: 51  KGEYETAISTLNDAV---EQGREMRA-DYKVISKSFARIGNAYHKLGDLKKTIEYYQK-- 104

Query: 404 TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLL 463
                  +      +     +   E  +   +    +  +  +    EG           
Sbjct: 105 -------SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKE-------YF 150

Query: 464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523
                P A+       +R      P+       Y+N  AA  +L     A      A   
Sbjct: 151 TKSDWPNAVKAYTEMIKR-----APEDA---RGYSNRAAALAKLMSFPEAIADCNKA--- 199

Query: 524 MDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
             +   P+      A    + A  ++  Y  A+E    A  
Sbjct: 200 --IEKDPNFV---RAYIRKATAQIAVKEYASALETLDAART 235

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 46/306 (15%), Positives = 90/306 (29%), Gaps = 59/306 (19%)

Query: 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEAL 269
                N      + +EA+EH  K  E+      +D   L   NR  A A      ++ A+
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELH-----KDITYLN--NR--AAAEYEKGEYETAI 58

Query: 270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN----ELSQKVLKTWG 325
                A+E  +        E+  D +++   ++ +      L       E  QK L    
Sbjct: 59  STLNDAVEQGR--------EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110

Query: 326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKF 385
                       A++   L   E+ +   +       +++E         GK    +  +
Sbjct: 111 T-----------ADILTKLRNAEKELKKAEAEAYVNPEKAEE----ARLEGKEYFTKSDW 155

Query: 386 ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445
            +A +       I       +PE+ A  YS  +     +  F  AI+   + +       
Sbjct: 156 PNAVKAYTEM--I-----KRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 207

Query: 446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL 505
           +A         R     +   +   A+  L++A          +        +      L
Sbjct: 208 RAYI-------RKATAQIAVKEYASALETLDAART-KD----AEV---NNGSSAREIDQL 252

Query: 506 ELDRPQ 511
                Q
Sbjct: 253 YYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 42/263 (15%), Positives = 78/263 (29%), Gaps = 70/263 (26%)

Query: 163 MGSANYSFKRFSDSLGYLSKA-----------NR-----MLGRLEEEGLGGSVED----- 201
            G+  Y  ++F +++ + +KA           NR       G  E      ++       
Sbjct: 11  EGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYET-----AISTLNDAV 65

Query: 202 -IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV 260
                M A +  ++     +G     L  L+K +E  +  L E           L     
Sbjct: 66  EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--ADILTKLR---- 119

Query: 261 AVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320
              N ++ L        ++         E A      G  Y    +   A++      ++
Sbjct: 120 ---NAEKELKKAEAEAYVNP-----EKAEEARLE---GKEYFTKSDWPNAVKAYT---EM 165

Query: 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL--------VF 372
           +K    + E  R   + A     L  F EAI                +A+         +
Sbjct: 166 IK---RAPEDARGYSNRAAALAKLMSFPEAI------------ADCNKAIEKDPNFVRAY 210

Query: 373 ISMGKALCNQEKFADAKRCLEIA 395
           I    A    +++A A   L+ A
Sbjct: 211 IRKATAQIAVKEYASALETLDAA 233

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
            G  +L    + +A    E+  ++      P+       + +LG    E ++   A    
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQK-----EPEREE---AWRSLGLTQAENEKDGLAIIAL 74

Query: 518 AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
             A       L P           L+ ++++  +   A+   +  +
Sbjct: 75  NHA-----RMLDPKDI---AVHAALAVSHTNEHNANAALASLRAWL 112

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 29/193 (15%)

Query: 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL 434
           +G  L    ++  A    E A          +P++  +A   ++     +     A+   
Sbjct: 11  LGVQLYALGRYDAALTLFERAL-------KENPQD-PEALYWLARTQLKLGLVNPALENG 62

Query: 435 KRTLALLEKLPQAQHSEGSV----SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490
           K  +A   +                 +        G + QA+  L+ A   +     P++
Sbjct: 63  KTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER-VN----PRY 117

Query: 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG 550
             +   +   G  Y  L     A      A     ++L        E    L++ Y SMG
Sbjct: 118 APL---HLQRGLVYALLGERDKAEASLKQA-----LALEDTP----EIRSALAELYLSMG 165

Query: 551 SYTLAIEFQQRAI 563
               A+    +A+
Sbjct: 166 RLDEALAQYAKAL 178

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 32/238 (13%), Positives = 63/238 (26%), Gaps = 47/238 (19%)

Query: 338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397
                ALG+++ A+   +  +++  ++ E        + +          A    +    
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPE----ALYWLARTQLKLGLVNPALENGKTLV- 66

Query: 398 ILDKKETISPEEVADAYS-----------EISMQYESMNEFETAISLLKRTLALLEKLPQ 446
                   +P      Y            +   +       E A+S+LK    +  +   
Sbjct: 67  ------ARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

Query: 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE 506
                       G +  L G+  +A   L+ A   L+            I + L   YL 
Sbjct: 120 LHLQ-------RGLVYALLGERDKAEASLKQALA-LE----DTP----EIRSALAELYLS 163

Query: 507 LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
           + R   A   +A A     +   P      +     + A    G    A         
Sbjct: 164 MGRLDEALAQYAKA-----LEQAPKDL---DLRVRYASALLLKGKAEEAARAAALEHH 213

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 30/165 (18%)

Query: 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGK 467
           +        + +Q  ++  ++ A++L +R L    + P+A +             L  G 
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLART-------QLKLGL 54

Query: 468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF---------A 518
           V  A+   ++          P++ G    Y  L  AY+ L R     +            
Sbjct: 55  VNPALENGKTLVA-RT----PRYLGG---YMVLSEAYVALYRQAEDRERGKGYLEQALSV 106

Query: 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
                    + P +A            Y+ +G    A    ++A+
Sbjct: 107 LKDAE---RVNPRYA---PLHLQRGLVYALLGERDKAEASLKQAL 145

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 51/231 (22%)

Query: 183 ANRMLGRLEEEGLGGSVED------IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236
               LGR +      ++          P        LA  +  +G    ALE+ +  +  
Sbjct: 14  QLYALGRYDA-----ALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

Query: 237 KELILEEDSRE----LGVANRDLAEAFVAVL----NFKEALPFGLKALEIHKKGLGHNSV 288
                          L  A   L              ++AL     A  ++         
Sbjct: 69  T-----PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-----PRYA 118

Query: 289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA----ANMQIAL 344
              H +   G++Y+ L E  KA       ++ L         L    +     A + +++
Sbjct: 119 P-LHLQ--RGLVYALLGERDKAEAS---LKQALA--------LEDTPEIRSALAELYLSM 164

Query: 345 GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395
           G+ +EA+      + Q  K+ +    + +    AL  + K  +A R   + 
Sbjct: 165 GRLDEALAQYAKALEQAPKDLD----LRVRYASALLLKGKAEEAARAAALE 211

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 7/169 (4%)

Query: 378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRT 437
             C  +   D  +          + E I   ++      +  ++     +++   LL+  
Sbjct: 265 RECTTKD-KDKAKVEVRKLSSPPQAEAI--RDMVRYARNVIEEFRRAKHYKSPSELLEIC 321

Query: 438 LALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFGV 493
               EK+             + +  +           A+ Y +   +   + +      V
Sbjct: 322 ELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381

Query: 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNL 542
             ++  LG  Y+ L+   +  +    A  IM+V+ G  H    E  Q +
Sbjct: 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSREL 248
           +L       ++ D+      V  E    K       E LE  +   E    + E+ +  +
Sbjct: 281 KLSSPPQAEAIRDMVRYARNVIEEFRRAKHYK-SPSELLEICELSQEKMSSVFEDSNVYM 339

Query: 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQ 308
                      + + +++ AL +G K ++ + K     S+ VA     LG +Y GLE   
Sbjct: 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKA 399

Query: 309 KALEQNELSQKVLK-TWGLSSELLR 332
              +  + +  +++   G     + 
Sbjct: 400 AGEKALKKAIAIMEVAHGKDHPYIS 424

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 2/125 (1%)

Query: 175 DSLGYLSKANRMLGRLE--EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQK 232
               +    + +L   E  +E +    ED    M  +  +   V   M   E AL++ QK
Sbjct: 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK 365

Query: 233 CLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH 292
            ++         S  +      L   ++ + N         KA+ I +   G +   ++ 
Sbjct: 366 IIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425

Query: 293 DRRLL 297
            ++ +
Sbjct: 426 IKQEI 430

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA 555
               L   +L+ D    A  +F        V   P +        +L K Y  +     A
Sbjct: 9   TRYALAQEHLKHDNASRALALFEEL-----VETDPDYV---GTYYHLGKLYERLDRTDDA 60

Query: 556 IEFQQRAIDAWESHGPS-AQDELREARRLLEQLK 588
           I+   + I+     G      EL++A+   E L+
Sbjct: 61  IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLE 94

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
             N  A Y E        ++   A ++        +    +A   +  +Y     Y  AI
Sbjct: 41  ITNQAAVYFEKGDYNKCRELCEKAIEV-GRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99

Query: 557 EFQQRAIDAWESHGPSAQDELREARRLLEQLK 588
            F  +++   E   P    + ++A ++L++ +
Sbjct: 100 HFYNKSLA--EHRTPDVLKKCQQAEKILKEQE 129

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 46.2 bits (111), Expect = 3e-06
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 23/153 (15%)

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470
           A+A+  +   Y    +++ AI   ++ L L  +  +A ++ G+            G   +
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA-------YYKQGDYDE 53

Query: 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530
           AI Y + A E L     P+       + NLG AY +      A  +  + K +    L P
Sbjct: 54  AIEYYQKALE-LD----PRSAEA---WYNLGNAYYKQGDYDEA--IEYYQKAL---ELDP 100

Query: 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
             A   EA  NL  AY   G Y  AIE+ Q+A+
Sbjct: 101 RSA---EAWYNLGNAYYKQGDYDEAIEYYQKAL 130

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 10/194 (5%)

Query: 375 MGKALCNQEKFADAKRCLEIACG---ILDKKETISPEEVADAYSEISMQYESMNEFETAI 431
           +       E    A++    + G   +    ++   EE AD   + +  Y    E   A 
Sbjct: 1   ISDP---VELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAG 57

Query: 432 SLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491
               +     +K    +   G+            G    A+  LE+A +        +  
Sbjct: 58  DSFLKAADYQKKA-GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFR 114

Query: 492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551
                   LG    E D    A  +  +       +     A S +     +   +  G 
Sbjct: 115 RGANFKFELGEIL-ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173

Query: 552 YTLAIEFQQRAIDA 565
           Y  A +   + I +
Sbjct: 174 YIEASDIYSKLIKS 187

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 5/187 (2%)

Query: 297 LGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356
              IY   +E   A +    +    K  G   E     ++A     + G    A+++L+ 
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 357 VVR--QTEKESETRALVFISMGKAL-CNQEKFADAKRCLEIACGILDKKETISPEEVADA 413
            ++      +    A     +G+ L  +   +A A  C E+A     + +  S       
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKC 160

Query: 414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIP 473
           + + +       ++  A  +  + +        +Q S      + G   L       A  
Sbjct: 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220

Query: 474 YLESAAE 480
            L+    
Sbjct: 221 TLQEGQS 227

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 6/185 (3%)

Query: 255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314
            A  +        A    LKA +  KK    N  E  +        +        A++  
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKK--AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100

Query: 315 ELSQKVLKTWGLSSELLRAEIDAANM-QIALGKFEEAINTLKGVVRQTEKESETRAL--V 371
           E + ++    G        + +   + +  L  + +AI+  +       ++         
Sbjct: 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160

Query: 372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI 431
           FI          ++ +A                +S   + D + +  +   +  +   A 
Sbjct: 161 FIKCADLKALDGQYIEASDIYSK-LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219

Query: 432 SLLKR 436
             L+ 
Sbjct: 220 RTLQE 224

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 26/137 (18%)

Query: 464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523
           +T   P+ +  L +A         P+ F     +  L  A L +    +           
Sbjct: 1   MTADGPRELLQLRAAVRHR-----PQDFVA---WLMLADAELGMGDTTAGEMAVQRG--- 49

Query: 524 MDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI-------DAWESHGPSAQD- 575
             ++L P H    EA   L +   +   +  A    Q+A              G + +D 
Sbjct: 50  --LALHPGHP---EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA 104

Query: 576 -ELREARRLLEQ-LKIK 590
            +   A     +  ++ 
Sbjct: 105 GQAEAAAAAYTRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 37/204 (18%), Positives = 62/204 (30%), Gaps = 27/204 (13%)

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470
             A+  ++     M +       ++R LAL    P+A    G V               +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH-------AE 75

Query: 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530
           A   L+ A++       P+H G+      LG A  +  + ++AA  +  A       L P
Sbjct: 76  AAVLLQQASDA-----APEHPGI---ALWLGHALEDAGQAEAAAAAYTRA-----HQLLP 122

Query: 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQ--DELREARRLLEQLK 588
                      L      +  +        +   A      + +    L E     EQL 
Sbjct: 123 EEP---YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLA 179

Query: 589 IKASGASINQLPTKALPLPPTSVS 612
              + A    +     PL PT V 
Sbjct: 180 CARTRA--QAIAASVRPLAPTRVR 201

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 17/133 (12%)

Query: 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517
           +G+     GK   A    ++                   +  LGA    L   + A Q +
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCML-----DHYDA---RYFLGLGACRQSLGLYEQALQSY 75

Query: 518 AFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDEL 577
           ++        +  +         + ++ +  +G    A      A  A  +  P+ +   
Sbjct: 76  SYG-----ALMDINEP---RFPFHAAECHLQLGDLDGAESGFYSAR-ALAAAQPAHEALA 126

Query: 578 REARRLLEQLKIK 590
             A  +LE +  +
Sbjct: 127 ARAGAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 18/138 (13%)

Query: 405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL 464
           +S +   +    +        +++ A  + +    L     +           +G     
Sbjct: 13  LSEDT-LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLG-------LGACRQS 64

Query: 465 TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524
            G   QA+      A                   +    +L+L     A   F  A+ + 
Sbjct: 65  LGLYEQALQSYSYGAL-----MDINEP---RFPFHAAECHLQLGDLDGAESGFYSARALA 116

Query: 525 DVSLGPHHADSIEACQNL 542
                P H         +
Sbjct: 117 AAQ--PAHEALAARAGAM 132

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 14/134 (10%), Positives = 36/134 (26%), Gaps = 17/134 (12%)

Query: 457 RIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV 516
            + +    +G    A    ++                   +  LGA    + +   A   
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS---RFFLGLGACRQAMGQYDLAIHS 77

Query: 517 FAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDE 576
           +++   +                 + ++     G    A      A +   ++ P   + 
Sbjct: 78  YSYGAVMDIXEPRFPF--------HAAECLLQXGELAEAESGLFLAQE-LIANXPEFXEL 128

Query: 577 LREARRLLEQLKIK 590
                 +LE +K+K
Sbjct: 129 STRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 19/140 (13%)

Query: 345 GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET 404
           G       T+  +   +    E       S+         + DA    +  C        
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLE----QLYSLAFNQYQSGXYEDAHXVFQALC-------V 49

Query: 405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL 464
           +   + +  +  +    ++M +++ AI        +    P+               LL 
Sbjct: 50  LDHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF-------HAAECLLQ 101

Query: 465 TGKVPQAIPYLESAAERLKE 484
            G++ +A   L  A E +  
Sbjct: 102 XGELAEAESGLFLAQELIAN 121

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
           YNN  A Y E  +     Q    A ++        +    +A      A+      +LA+
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEKAVEV-GRETRADYKLIAKAMSRAGNAFQKQNDLSLAV 103

Query: 557 EFQQRAIDAWESHGPSAQDELREARR 582
           ++  R++   E   P    +++E  +
Sbjct: 104 QWFHRSLS--EFRDPELVKKVKELEK 127

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 16/110 (14%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 224 EEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL 283
            E ++  ++CLE +E +  + +  +       +E    +  ++EA  +  + ++ + K  
Sbjct: 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY 385

Query: 284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK-TWGLSSELLR 332
            HN+ ++       G+        +        +  +L  T G S  + +
Sbjct: 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 45.3 bits (106), Expect = 4e-05
 Identities = 18/169 (10%), Positives = 46/169 (27%), Gaps = 1/169 (0%)

Query: 382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALL 441
           Q+   D             ++      + +    E   +  S   +   + L +  L   
Sbjct: 280 QKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQ 339

Query: 442 EKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL 500
           E +    +     + +    +L       +A  Y     +   + +   +  +G      
Sbjct: 340 EPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399

Query: 501 GAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM 549
           G         +    +   A  I+ V+ GP H  + +      +    +
Sbjct: 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL 448

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 466 GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525
           G   QA+PY E A     +  G         Y  LG+ +  L   + A  V A       
Sbjct: 4   GLEAQAVPYYEKAIASGLQ--GKDLAEC---YLGLGSTFRTLGEYRKAEAVLANG----- 53

Query: 526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
           V   P+H          +    ++G Y   +E   + I
Sbjct: 54  VKQFPNHQ---ALRVFYAMVLYNLGRYEQGVELLLKII 88

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
           + NLG AY +      A  +  + K +    L P++A   EA  NL  AY   G Y  AI
Sbjct: 12  WYNLGNAYYKQGDYDEA--IEYYQKAL---ELDPNNA---EAWYNLGNAYYKQGDYDEAI 63

Query: 557 EFQQRAI 563
           E+ Q+A+
Sbjct: 64  EYYQKAL 70

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
           + NLG AY +      A  +  + K +    L P++A   EA  NL  AY   G Y  AI
Sbjct: 12  WYNLGNAYYKQGDYDEA--IEYYQKAL---ELDPNNA---EAWYNLGNAYYKQGDYDEAI 63

Query: 557 EFQQRAI 563
           E+ Q+A+
Sbjct: 64  EYYQKAL 70

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556
           + NLG AY +      A  +  + K +    L P++A   EA  NL  AY   G Y  AI
Sbjct: 46  WYNLGNAYYKQGDYDEA--IEYYQKAL---ELDPNNA---EAWYNLGNAYYKQGDYDEAI 97

Query: 557 EFQQRAI 563
           E+ Q+A+
Sbjct: 98  EYYQKAL 104

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.5 bits (91), Expect = 9e-04
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 23/146 (15%)

Query: 405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL 464
           + P   A+A+  +   Y    +++ AI   ++ L L     +A ++ G+           
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA-------YYK 55

Query: 465 TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524
            G   +AI Y + A E L     P +      + NLG AY +      A  +  + K + 
Sbjct: 56  QGDYDEAIEYYQKALE-LD----PNNAEA---WYNLGNAYYKQGDYDEA--IEYYQKAL- 104

Query: 525 DVSLGPHHADSIEACQNLSKAYSSMG 550
              L P++A   EA QNL  A    G
Sbjct: 105 --ELDPNNA---EAKQNLGNAKQKQG 125

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 22/175 (12%), Positives = 57/175 (32%), Gaps = 30/175 (17%)

Query: 415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPY 474
           +E      ++ +   + + LK   A+ + +    +S         +     G++ +A  +
Sbjct: 6   TENESISTAVIDAINSGATLKDINAIPDDMMDDIYS-------YAYDFYNKGRIEEAEVF 58

Query: 475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD 534
                      +   +         L A Y   ++ Q AA ++A A  +          +
Sbjct: 59  FRFLCI-----YDFYNV---DYIMGLAAIYQIKEQFQQAADLYAVAFAL--------GKN 102

Query: 535 SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELRE-ARRLLEQLK 588
                 +  +    + +   A E  +  I        S  ++L+  A+  L+ ++
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH------SNDEKLKIKAQSYLDAIQ 151

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE 428
           A+   + G    +++ +  A                   +  +     I   Y  +    
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFSAV-----------QDPHSRICFNIGCMYTILKNMT 54

Query: 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488
            A     R++   + L  A           G L   T K   AI  L+ A  +L+ +   
Sbjct: 55  EAEKAFTRSINRDKHLAVAYFQ-------RGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107

Query: 489 KHFGVGY--------IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQ 540
            +  +G         +  N+   Y + +  + A +  A A  +      P H+   +A +
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM---KSEPRHSKIDKAME 164

Query: 541 NLSKA 545
            + K 
Sbjct: 165 CVWKQ 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	630
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	100.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.98
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.98
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.96
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.93
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.9
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.9
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.86
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.86
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.83
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.81
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.81
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.8
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.79
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.79
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.79
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.78
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.76
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.75
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.73
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.72
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.71
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.71
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.7
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.7
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.7
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.7
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.67
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.65
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.64
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.64
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.61
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.61
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.6
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.59
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.54
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.52
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.52
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.51
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.51
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.5
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.49
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.48
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.47
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.47
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.45
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.44
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.41
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.4
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.4
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.39
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.38
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.37
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.37
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.36
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.35
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.34
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.33
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.33
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.32
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.32
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.26
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.23
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.21
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.2
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.19
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.18
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.17
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.16
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.16
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.11
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.1
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.08
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.08
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.05
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.01
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.0
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.99
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.98
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.97
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.97
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.91
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.88
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.86
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.84
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.83
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.83
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.82
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.79
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.75
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.71
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.7
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.69
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.68
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.62
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.62
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.61
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.58
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.56
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.41
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.39
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.36
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.35
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.31
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.24
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.21
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.01
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.99
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.98
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.96
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.95
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.77
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.7
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.52
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.03
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.93
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.72
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.56
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.45
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.44
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.43
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.31
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.7
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.63
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.58
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.22
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.16
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.42
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.36
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.12
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.04
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.88
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.72
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.59
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.51
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.45
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.21
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.76
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.46
2npm_A	260	14-3-3 domain containing protein; cell regulator p	92.11
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	90.74
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	90.67
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	90.26
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.17
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	89.91
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.77
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	89.75
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.39
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	89.32
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.09
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	88.93
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	88.48
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	88.34
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	88.07
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.94
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.75
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	87.2
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	85.3
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	83.98
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	82.57
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	80.5
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	80.08

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.1e-35  Score=293.46  Aligned_cols=365  Identities=19%  Similarity=0.172  Sum_probs=318.8

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCC
Q 006812          117 KIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG  196 (630)
Q Consensus       117 ~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  196 (630)
                      .+|..++..| ++++|+..++++++..+          ..+.++..+|.++...|++++|..++++++..          
T Consensus         4 ~~a~~~~~~g-~~~~A~~~~~~~~~~~p----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----------   62 (388)
T 1w3b_A            4 ELAHREYQAG-DFEAAERHCMQLWRQEP----------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----------   62 (388)
T ss_dssp             THHHHHHHHT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred             hHHHHHHHCC-CHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------
Confidence            4577778888 99999999999887642          33556788999999999999999999999987          


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006812          197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKAL  276 (630)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  276 (630)
                            .|....+++.+|.++...|++++|+..|++++++.        |....++..+|.++...|++++|+..|++++
T Consensus        63 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  128 (388)
T 1w3b_A           63 ------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--------PDFIDGYINLAAALVAAGDMEGAVQAYVSAL  128 (388)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred             ------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  34446788999999999999999999999998643        4446789999999999999999999999999


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          277 EIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG  356 (630)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  356 (630)
                      ++.+        ....++..+|.++...|++++|+..|++++..      .|....++..+|.++...|++++|+..|++
T Consensus       129 ~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  194 (388)
T 1w3b_A          129 QYNP--------DLYCVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             HHCT--------TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HhCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8643        33466788999999999999999999999886      677788999999999999999999999999


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR  436 (630)
Q Consensus       357 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  436 (630)
                      ++...+..    ..++..+|.++...|++++|+..+++++.+.        |....++..+|.++...|++++|+..|++
T Consensus       195 al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  262 (388)
T 1w3b_A          195 AVTLDPNF----LDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRR  262 (388)
T ss_dssp             HHHHCTTC----HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99975544    4589999999999999999999999998874        45567889999999999999999999999


Q ss_pred             HHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH
Q 006812          437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV  516 (630)
Q Consensus       437 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  516 (630)
                      ++++     .+.  ...++..+|.++...|++++|+.+|++++++        .|....++..+|.++...|++++|+..
T Consensus       263 al~~-----~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~  327 (388)
T 1w3b_A          263 AIEL-----QPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             HHHT-----CSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHhh-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9985     222  2457899999999999999999999999984        355567899999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          517 FAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       517 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      |+++++        ..|+...++.++|.+|...|++++|+..|++++++
T Consensus       328 ~~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          328 YRKALE--------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHTT--------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999987        45666789999999999999999999999999864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6.3e-35  Score=288.13  Aligned_cols=360  Identities=18%  Similarity=0.158  Sum_probs=315.3

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      +|....++..+|.++...| ++++|+.+++++++..          |..+.++..+|.++...|++++|+..|++++.+ 
T Consensus        29 ~p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-   96 (388)
T 1w3b_A           29 EPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQN----------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL-   96 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred             CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC----------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-
Confidence            3777788899999999999 9999999999998754          345678899999999999999999999999987 


Q ss_pred             hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812          188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE  267 (630)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (630)
                                     .|....++..+|.++...|++++|+..|+++++..        |....++..+|.++...|++++
T Consensus        97 ---------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~  153 (388)
T 1w3b_A           97 ---------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------PDLYCVRSDLGNLLKALGRLEE  153 (388)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHTTSCHHH
T ss_pred             ---------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHccCHHH
Confidence                           23345678899999999999999999999998643        4446778899999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH
Q 006812          268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF  347 (630)
Q Consensus       268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  347 (630)
                      |+..|++++...        |....++..+|.++...|++++|+.+|++++.+      .|....++..+|.++...|++
T Consensus       154 A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~  219 (388)
T 1w3b_A          154 AKACYLKAIETQ--------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLDAYINLGNVLKEARIF  219 (388)
T ss_dssp             HHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCH
Confidence            999999999853        334577889999999999999999999999987      677888999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH
Q 006812          348 EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEF  427 (630)
Q Consensus       348 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  427 (630)
                      ++|+..+++++...+.+    ..++..+|.++...|++++|+..+++++.+.        |....++..+|.++...|++
T Consensus       220 ~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~  287 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNH----AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALKEKGSV  287 (388)
T ss_dssp             THHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHhhCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCH
Confidence            99999999999976544    4588999999999999999999999998753        34557899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 006812          428 ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL  507 (630)
Q Consensus       428 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  507 (630)
                      ++|+.+|++++++     .+  ....++..+|.++...|++++|+.+++++++        ..|....++..+|.++...
T Consensus       288 ~~A~~~~~~al~~-----~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~  352 (388)
T 1w3b_A          288 AEAEDCYNTALRL-----CP--THADSLNNLANIKREQGNIEEAVRLYRKALE--------VFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHHHHH-----CT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--------SCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhh-----Cc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHc
Confidence            9999999999986     22  2346889999999999999999999999987        3566778999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 006812          508 DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS  551 (630)
Q Consensus       508 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  551 (630)
                      |++++|+..|+++++        .+|+...++.++|.++..+|+
T Consensus       353 g~~~~A~~~~~~a~~--------~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          353 GKLQEALMHYKEAIR--------ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCCHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHh--------hCCCCHHHHHhHHHHHHHccC
Confidence            999999999999987        456677899999999988875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-32  Score=276.30  Aligned_cols=394  Identities=13%  Similarity=0.057  Sum_probs=325.7

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      ...+..++.+|..++..| ++++|+..|++++...     +      .+.++..+|.++...|++++|+..+++++.+  
T Consensus         3 ~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~-----p------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--   68 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNK-KYDDAIKYYNWALELK-----E------DPVFYSNLSACYVSVGDLKKVVEMSTKALEL--   68 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC-----C------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             chhHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcC-----c------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--
Confidence            345688999999999999 9999999999999865     1      1567889999999999999999999999987  


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc--------------------------
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE--------------------------  242 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------  242 (630)
                                    .|....+++.+|.++...|++++|+..|++++...+....                          
T Consensus        69 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  134 (514)
T 2gw1_A           69 --------------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID  134 (514)
T ss_dssp             --------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----
T ss_pred             --------------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          2333567889999999999999999999998754320000                          


Q ss_pred             ---------------------c------------------------chHHHHHHHHHHHHHHHH---hcCHHHHHHHHHH
Q 006812          243 ---------------------E------------------------DSRELGVANRDLAEAFVA---VLNFKEALPFGLK  274 (630)
Q Consensus       243 ---------------------~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~  274 (630)
                                           +                        ..|.....+..+|.++..   .|++++|+.+|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  214 (514)
T 2gw1_A          135 TATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTK  214 (514)
T ss_dssp             ----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred             HHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence                                 0                        001225667788888876   8999999999999


Q ss_pred             HHHHHhhhc--CCCC----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 006812          275 ALEIHKKGL--GHNS----VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE  348 (630)
Q Consensus       275 al~~~~~~~--~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  348 (630)
                      +++..+...  .+++    +....++..+|.++...|++++|+.++++++..      .|. ..++..+|.++...|+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~  287 (514)
T 2gw1_A          215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDST  287 (514)
T ss_dssp             HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCT
T ss_pred             HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHH
Confidence            999553332  2222    567888999999999999999999999999886      455 889999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812          349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE  428 (630)
Q Consensus       349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  428 (630)
                      +|+..+++++...+.+    ..++..+|.++...|++++|+.++++++.+.        |....++..+|.++...|+++
T Consensus       288 ~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~  355 (514)
T 2gw1_A          288 EYYNYFDKALKLDSNN----SSVYYHRGQMNFILQNYDQAGKDFDKAKELD--------PENIFPYIQLACLAYRENKFD  355 (514)
T ss_dssp             TGGGHHHHHHTTCTTC----THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--------SSCSHHHHHHHHHTTTTTCHH
T ss_pred             HHHHHHHHHhhcCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------hhhHHHHHHHHHHHHHcCCHH
Confidence            9999999999876554    3488999999999999999999999998764        233468899999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--
Q 006812          429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE--  506 (630)
Q Consensus       429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--  506 (630)
                      +|+.++++++...     +.  ...++..+|.++...|++++|+.++++++.+....  +.......++..+|.++..  
T Consensus       356 ~A~~~~~~~~~~~-----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~  426 (514)
T 2gw1_A          356 DCETLFSEAKRKF-----PE--APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNP  426 (514)
T ss_dssp             HHHHHHHHHHHHS-----TT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHc-----cc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhh
Confidence            9999999999862     22  23588999999999999999999999999865432  1111224478899999999  


Q ss_pred             -cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          507 -LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       507 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                       .|++++|+..|++++.+        .|....++..+|.+|...|++++|..+|++++++.
T Consensus       427 ~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          427 TVENFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             CTTHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence             99999999999999985        24445789999999999999999999999999863

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=4.7e-31  Score=272.76  Aligned_cols=391  Identities=13%  Similarity=0.035  Sum_probs=308.7

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      ...+..++.+|..++..| ++++|+.+|++++...+          ..+.++..+|.+|...|++++|+..|++++.+  
T Consensus        22 ~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--   88 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDP----------NEPVFYSNISACYISTGDLEKVIEFTTKALEI--   88 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCC----------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence            345688899999999999 99999999999998752          33578899999999999999999999999988  


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------Hhcc-
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL------------------------ILEE-  243 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------------~~~~-  243 (630)
                                    .|....+++.+|.++...|++++|+..|+ ++.....                        .+.. 
T Consensus        89 --------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~  153 (537)
T 3fp2_A           89 --------------KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD  153 (537)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC--
T ss_pred             --------------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                          23345678899999999999999999995 4432211                        1000 


Q ss_pred             -----------------------------------chHHHHHHHHHH--------HHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          244 -----------------------------------DSRELGVANRDL--------AEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       244 -----------------------------------~~~~~~~~~~~l--------a~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                                                         ..+........+        +......|++++|+..|+++++..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p  233 (537)
T 3fp2_A          154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT  233 (537)
T ss_dssp             -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred             ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence                                               000000012222        2223334577777777777776544


Q ss_pred             hhcCCCCH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          281 KGLGHNSV----EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG  356 (630)
Q Consensus       281 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  356 (630)
                           +++    ..+.++..+|.++...|++++|+.++++++..      .|. ..++..+|.++...|++++|+..+++
T Consensus       234 -----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~  301 (537)
T 3fp2_A          234 -----VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQK  301 (537)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred             -----CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                 233    34667899999999999999999999999887      555 78899999999999999999999999


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR  436 (630)
Q Consensus       357 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  436 (630)
                      ++...+.+    ..++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+.++++
T Consensus       302 ~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  369 (537)
T 3fp2_A          302 AVDLNPEY----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQLACLLYKQGKFTESEAFFNE  369 (537)
T ss_dssp             HHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99876554    4489999999999999999999999998864        33347889999999999999999999999


Q ss_pred             HHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---------
Q 006812          437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL---------  507 (630)
Q Consensus       437 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  507 (630)
                      ++...     +.  ...++..+|.++...|++++|+.+|++++++.....  ........+..+|.++...         
T Consensus       370 ~~~~~-----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~  440 (537)
T 3fp2_A          370 TKLKF-----PT--LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE--KIHVGIGPLIGKATILARQSSQDPTQLD  440 (537)
T ss_dssp             HHHHC-----TT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS--SCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred             HHHhC-----CC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch--hhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence            99862     22  245889999999999999999999999999775531  2222333467889999999         


Q ss_pred             -CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          508 -DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       508 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                       |++++|+.+|++++.+        +|+...++..+|.+|...|++++|+.+|++++++.+.
T Consensus       441 ~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          441 EEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence             9999999999999985        3455578999999999999999999999999987654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.4e-31  Score=274.92  Aligned_cols=395  Identities=13%  Similarity=0.060  Sum_probs=309.1

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH------HhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHH
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLD------KDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSK  182 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (630)
                      +....++..++.+|...| ++++|+..|++......      .....+...+..+.+++.+|.+|...|++++|+..|++
T Consensus       147 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  225 (597)
T 2xpi_A          147 NRSSACRYLAAFCLVKLY-DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE  225 (597)
T ss_dssp             GTCHHHHHHHHHHHHHTT-CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHh-hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            333456666777777776 77777777664110000      00000001134578899999999999999999999999


Q ss_pred             HHHHHhHhhhcCCCCCCccc-------------------------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          183 ANRMLGRLEEEGLGGSVEDI-------------------------------KPIMHAVHLELANVKTAMGRREEALEHLQ  231 (630)
Q Consensus       183 al~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (630)
                      ++....         ..++.                               ......++..++..|...|++++|+..|+
T Consensus       226 ~~~~~p---------~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  296 (597)
T 2xpi_A          226 ALMVDA---------KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS  296 (597)
T ss_dssp             HHHHCT---------TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred             HHHhCc---------hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            988621         11111                               00111223334666778899999999998


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHH
Q 006812          232 KCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKAL  311 (630)
Q Consensus       232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (630)
                      ++++.         +....++..+|.+|...|++++|+.+|+++++..+.        ...++..++.++...|++++|+
T Consensus       297 ~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~  359 (597)
T 2xpi_A          297 SINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY--------NLDVYPLHLASLHESGEKNKLY  359 (597)
T ss_dssp             TSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CCTTHHHHHHHHHHHTCHHHHH
T ss_pred             HhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc--------cHHHHHHHHHHHHHhCCHHHHH
Confidence            87643         233678899999999999999999999999975432        2345778899999999999999


Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHH
Q 006812          312 EQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRC  391 (630)
Q Consensus       312 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  391 (630)
                      ..+++++..      .|....++..+|.+|...|++++|+.+|+++++..+.+    ..++..++.+|...|++++|+..
T Consensus       360 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~  429 (597)
T 2xpi_A          360 LISNDLVDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAISA  429 (597)
T ss_dssp             HHHHHHHHH------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhh------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Confidence            999988765      56678889999999999999999999999999865443    44889999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhH
Q 006812          392 LEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQA  471 (630)
Q Consensus       392 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (630)
                      |++++...        |....++..+|.+|...|++++|+.+|++++++     .+.  ...++..+|.++...|++++|
T Consensus       430 ~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~l~~~~~~~g~~~~A  494 (597)
T 2xpi_A          430 YTTAARLF--------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQY--DPLLLNELGVVAFNKSDMQTA  494 (597)
T ss_dssp             HHHHHHTT--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhC--------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--ChHHHHHHHHHHHHhCCHHHH
Confidence            99988654        334478899999999999999999999999886     222  346789999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC
Q 006812          472 IPYLESAAERLKESFGPKHFGV-GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG  550 (630)
Q Consensus       472 ~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  550 (630)
                      +.+|++++++....  +..|.. ..++..+|.+|...|++++|+..|++++++.        |+...++..+|.+|...|
T Consensus       495 ~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          495 INHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             HHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhC
Confidence            99999999976553  234553 7899999999999999999999999999852        444579999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 006812          551 SYTLAIEFQQRAIDA  565 (630)
Q Consensus       551 ~~~~A~~~~~~al~~  565 (630)
                      ++++|.++|++++++
T Consensus       565 ~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          565 IPGLAITHLHESLAI  579 (597)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999999986

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-31  Score=274.70  Aligned_cols=417  Identities=13%  Similarity=0.043  Sum_probs=312.8

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812          111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL  190 (630)
Q Consensus       111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  190 (630)
                      ....|..++..+...| ++++|+..|++++...+     +     . ..+..+|.+|...|++++|+..|++++..    
T Consensus        83 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p-----~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  146 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQ-QYKCAAFVGEKVLDITG-----N-----P-NDAFWLAQVYCCTGDYARAKCLLTKEDLY----  146 (597)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHC-----C-----H-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG----
T ss_pred             HHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhCC-----C-----c-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc----
Confidence            4567788999999998 99999999999986542     1     1 35577999999999999999999987643    


Q ss_pred             hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHhccchHHHHHHHHHHHHHHHHh
Q 006812          191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE--------LILEEDSRELGVANRDLAEAFVAV  262 (630)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~la~~~~~~  262 (630)
                       .            ....+++.++.+|...|++++|+..|++......        .......+....+++.+|.+|...
T Consensus       147 -~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  213 (597)
T 2xpi_A          147 -N------------RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL  213 (597)
T ss_dssp             -G------------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred             -c------------cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence             1            1135778899999999999999999985321000        000001134578899999999999


Q ss_pred             cCHHHHHHHHHHHHHHHhhhcC----------------------------------------------------------
Q 006812          263 LNFKEALPFGLKALEIHKKGLG----------------------------------------------------------  284 (630)
Q Consensus       263 g~~~~A~~~~~~al~~~~~~~~----------------------------------------------------------  284 (630)
                      |++++|+..|+++++..+....                                                          
T Consensus       214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  293 (597)
T 2xpi_A          214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED  293 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            9999999999999875432000                                                          


Q ss_pred             -----CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          285 -----HNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVR  359 (630)
Q Consensus       285 -----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  359 (630)
                           ...+....++..++.+|...|++++|+.+|++++..      .|....++..++.++...|++++|+..+++++.
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  367 (597)
T 2xpi_A          294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD  367 (597)
T ss_dssp             HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence                 000122344555666666666666666666665543      233444556666666666666666666666665


Q ss_pred             HhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          360 QTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       360 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                      ..+.    ...++..+|.+|...|++++|..+|++++++.        |....++..++.+|...|++++|+.+|++++.
T Consensus       368 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          368 RHPE----KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             HCTT----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hCcc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3332    25588889999999999999999999998753        34557889999999999999999999999987


Q ss_pred             HHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812          440 LLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF  519 (630)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  519 (630)
                      ..     +  ....++..+|.+|...|++++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++
T Consensus       436 ~~-----~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  500 (597)
T 2xpi_A          436 LF-----Q--GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQN  500 (597)
T ss_dssp             TT-----T--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hC-----c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            52     1  23468899999999999999999999999874        244556899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------cCC--CchhHHHHHHHHHHHHHH
Q 006812          520 AKDIMDVSLGPHHADS-IEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-------HGP--SAQDELREARRLLEQLKI  589 (630)
Q Consensus       520 al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~--~~~~~~~~A~~~~~~~~~  589 (630)
                      ++++....  +.+|+. ..++..+|.+|...|++++|+.+|++++++.+.       ++.  ...|++++|...|+++.+
T Consensus       501 ~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          501 ALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             HHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            99976542  124543 679999999999999999999999999876321       000  145788999999999887


Q ss_pred             Hh
Q 006812          590 KA  591 (630)
Q Consensus       590 ~~  591 (630)
                      ..
T Consensus       579 ~~  580 (597)
T 2xpi_A          579 IS  580 (597)
T ss_dssp             HC
T ss_pred             cC
Confidence            63

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.6e-31  Score=268.71  Aligned_cols=390  Identities=14%  Similarity=0.078  Sum_probs=265.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      +++..+..+..+|.++...| ++++|+++|++|+++.+...+. ..++..+.++.++|.+|..+|++++|+.++++++.+
T Consensus        46 ~~~~~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~-~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i  123 (472)
T 4g1t_A           46 NREFKATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHAD-QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV  123 (472)
T ss_dssp             C---CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGG-GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            44556778889999999999 9999999999999998776332 234667889999999999999999999999999999


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH---HHH
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM--GRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEA---FVA  261 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~  261 (630)
                      .+...+..        .+..+.++..+|.++...  ++|++|+.+|++++++.     ++++   .++..+|.+   +..
T Consensus       124 ~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~---~~~~~~~~~~~~l~~  187 (472)
T 4g1t_A          124 CEKFSSPY--------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNP---EFTSGLAIASYRLDN  187 (472)
T ss_dssp             HHHSCCSS--------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHHHH
T ss_pred             hHhccccc--------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcC
Confidence            87765433        223345677788777665  57999999999999764     3444   455555555   445


Q ss_pred             hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 006812          262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIY----SGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA  337 (630)
Q Consensus       262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  337 (630)
                      .+++++|++.+++++++.+     +.   ..++..+|..+    ...|++++|+.++++++..      .|....++.++
T Consensus       188 ~~~~~~al~~~~~al~l~p-----~~---~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~l  253 (472)
T 4g1t_A          188 WPPSQNAIDPLRQAIRLNP-----DN---QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSA  253 (472)
T ss_dssp             SCCCCCTHHHHHHHHHHCS-----SC---HHHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcCC-----cc---hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHH
Confidence            6788999999999998744     22   23444555444    4567889999999998886      67778899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-------------------ccHHHHHHHHHHHHHH
Q 006812          338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-------------------EKFADAKRCLEIACGI  398 (630)
Q Consensus       338 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-------------------~~~~~A~~~~~~a~~~  398 (630)
                      |.+|...|++++|+..++++++..+.+    +.++..+|.+|...                   +.+++|...+++++.+
T Consensus       254 g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  329 (472)
T 4g1t_A          254 AKFYRRKDEPDKAIELLKKALEYIPNN----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA  329 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence            999999999999999999999976654    44778888777543                   2345555666655554


Q ss_pred             HHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHH-HHHcCChhhHHHHHH
Q 006812          399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWL-LLLTGKVPQAIPYLE  476 (630)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~  476 (630)
                      .        |....++..+|.+|...|++++|+.+|++++.+     ...+.. ..++..+|.+ +...|++++|+.+|+
T Consensus       330 ~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~  396 (472)
T 4g1t_A          330 N--------DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI  396 (472)
T ss_dssp             C--------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             C--------CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3        344466788888899999999999999888874     112111 2345566654 456788889999998


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 006812          477 SAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI  556 (630)
Q Consensus       477 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  556 (630)
                      +++.+     .+....   ..          +....+...+++++.        .+|..+.++.+||.+|...|++++|+
T Consensus       397 kal~i-----~~~~~~---~~----------~~~~~l~~~~~~~l~--------~~p~~~~~~~~LG~~~~~~g~~~~A~  450 (472)
T 4g1t_A          397 EGVKI-----NQKSRE---KE----------KMKDKLQKIAKMRLS--------KNGADSEALHVLAFLQELNEKMQQAD  450 (472)
T ss_dssp             HHHHS-----CCCCHH---HH----------HHHHHHHHHHHHHHH--------HCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred             HHHhc-----CcccHH---HH----------HHHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            88873     222221   11          112233445555554        34666689999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 006812          557 EFQQRAIDAWESHGP  571 (630)
Q Consensus       557 ~~~~~al~~~~~~~~  571 (630)
                      ++|++|+++....+.
T Consensus       451 ~~y~kALe~~~~~p~  465 (472)
T 4g1t_A          451 EDSERGLESGSLIPS  465 (472)
T ss_dssp             ---------------
T ss_pred             HHHHHHHhcCCCCCc
Confidence            999999987655443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.9e-29  Score=250.79  Aligned_cols=344  Identities=18%  Similarity=0.181  Sum_probs=296.2

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .+.++..+|.++...|++++|+.+|++++.+         .+   +.....+.++..+|.++...|++++|+.+++++++
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   75 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV---------GT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT   75 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---------Cc---ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4556788999999999999999999999998         11   22334567889999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc---------
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE---------  306 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------  306 (630)
                      +.+..  .+.+..+.++..+|.+|...|++++|+.++++++++.+...  +....+.++..+|.+|...|+         
T Consensus        76 ~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  151 (406)
T 3sf4_A           76 LARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQD  151 (406)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred             HHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccch
Confidence            98776  66788899999999999999999999999999999988753  445677899999999999999         


Q ss_pred             -----------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHH
Q 006812          307 -----------HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFI  373 (630)
Q Consensus       307 -----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~  373 (630)
                                 +++|+.++++++.+....+..+....++..+|.++...|++++|+.++++++...+..  ....+.++.
T Consensus       152 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  231 (406)
T 3sf4_A          152 VGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS  231 (406)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence                       9999999999999999988888899999999999999999999999999999987664  345577899


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS  453 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  453 (630)
                      .+|.++...|++++|+.++++++.+.....  +++....++..+|.++...|++++|+.++++++.+...... ......
T Consensus       232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~  308 (406)
T 3sf4_A          232 NLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGR  308 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHH
Confidence            999999999999999999999999987653  45566889999999999999999999999999999887632 222356


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFA  520 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  520 (630)
                      ++..+|.+|...|++++|+.++++++++....  .+.+....++..+|.++...|+...+...+.+.
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  373 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE  373 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence            78999999999999999999999999998776  345677889999999999999875544444333

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.98  E-value=2.9e-29  Score=249.42  Aligned_cols=344  Identities=17%  Similarity=0.146  Sum_probs=295.3

Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhH
Q 006812          110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGR  189 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  189 (630)
                      ..+..++..|..+...| ++++|+.+|++++++.     ++. ....+.++..+|.++...|++++|+.++++++.+...
T Consensus         7 ~~~~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~-----~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   79 (406)
T 3sf4_A            7 ASCLELALEGERLCKSG-DCRAGVSFFEAAVQVG-----TED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART   79 (406)
T ss_dssp             CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-----CSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcC-----ccc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            34567889999999999 9999999999999874     221 2345778999999999999999999999999999776


Q ss_pred             hhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC-----
Q 006812          190 LEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN-----  264 (630)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----  264 (630)
                      ..+          .+....++..+|.++...|++++|+.++++++++.+..  .+.+..+.++..+|.+|...|+     
T Consensus        80 ~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~  147 (406)
T 3sf4_A           80 IGD----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCP  147 (406)
T ss_dssp             TTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred             ccc----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCccccc
Confidence            532          34667889999999999999999999999999999876  5667778899999999999999     


Q ss_pred             ---------------HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          265 ---------------FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       265 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                                     +++|+.++++++.+....  .+.+..+.++.++|.++...|++++|+.++++++.+....+..+.
T Consensus       148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  225 (406)
T 3sf4_A          148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA  225 (406)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence                           999999999999998875  245677889999999999999999999999999999998887788


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP  407 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  407 (630)
                      ...++..+|.+|...|++++|+.++++++...+..  ....+.++..+|.++...|++++|..++++++.+.....  ++
T Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~  303 (406)
T 3sf4_A          226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DR  303 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--Cc
Confidence            88899999999999999999999999999887654  344577899999999999999999999999999987654  45


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                      +....++..+|.+|...|++++|+.++++++++.+... .......++..+|.++...|+...+...+.+
T Consensus       304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~  372 (406)
T 3sf4_A          304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG-DKSGELTARLNLSDLQMVLGLSYSTNNSIMS  372 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence            67788999999999999999999999999999988873 2333467889999999999988654444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.98  E-value=1.4e-29  Score=255.51  Aligned_cols=385  Identities=16%  Similarity=0.107  Sum_probs=295.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      .+|.....++.+|..++..| ++++|+.+|++++...          |..+.++..+|.++...|++++|+..|++++.+
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAG-QLADALSQFHAAVDGD----------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC----------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            45888899999999999999 9999999999998763          233678899999999999999999999999988


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchH---HH---------HHHHHH
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR---EL---------GVANRD  254 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~---------~~~~~~  254 (630)
                                      .|....++..+|.+|...|++++|+..|++++++.     ++.+   ..         ...+..
T Consensus        90 ----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~  148 (450)
T 2y4t_A           90 ----------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSENEEKEAQSQLIKSDEMQRLRS  148 (450)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHHHHHH
Confidence                            23335778899999999999999999999998542     2222   11         122455


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 006812          255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAE  334 (630)
Q Consensus       255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  334 (630)
                      +|.++...|++++|+.+|+++++..+        ....++..+|.+|...|++++|+.+|++++..      .|....++
T Consensus       149 ~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~  214 (450)
T 2y4t_A          149 QALNAFGSGDYTAAIAFLDKILEVCV--------WDAELRELRAECFIKEGEPRKAISDLKAASKL------KNDNTEAF  214 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH------HCSCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHH
Confidence            68889999999999999999998643        23467889999999999999999999999886      45567889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH--------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETR--------ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      ..+|.+|...|++++|+..+++++...+......        ......+|.++...|++++|+.++++++.+...    +
T Consensus       215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----~  290 (450)
T 2y4t_A          215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----I  290 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS----S
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----c
Confidence            9999999999999999999999998766543321        112244599999999999999999999886421    2


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                      +......+..+|.++...|++++|+.++++++.+     .+.  ...++..+|.++...|++++|+.+|+++++      
T Consensus       291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------  357 (450)
T 2y4t_A          291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EPD--NVNALKDRAEAYLIEEMYDEAIQDYETAQE------  357 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Ccc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------
Confidence            2334678999999999999999999999999986     222  346889999999999999999999999998      


Q ss_pred             CCCCccHHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHHHHHHhcCCCC--HHHHHHHHHHHHHH
Q 006812          487 GPKHFGVGYIYNNLGAA------------YLELD-----RPQSAAQVFAF-AKDIMDVSLGPHH--ADSIEACQNLSKAY  546 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-al~~~~~~~~~~~--~~~~~~~~~la~~~  546 (630)
                        ..|....++..++.+            |...|     +.+++...|++ ++...........  ......+..++.+|
T Consensus       358 --~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay  435 (450)
T 2y4t_A          358 --HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK  435 (450)
T ss_dssp             --TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred             --hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHH
Confidence              245556677778744            44455     55677788876 5542221111000  11224555566666


Q ss_pred             HhcCCHHHHH
Q 006812          547 SSMGSYTLAI  556 (630)
Q Consensus       547 ~~~g~~~~A~  556 (630)
                      ..+|+.+++.
T Consensus       436 ~~L~d~~~r~  445 (450)
T 2y4t_A          436 EVLSDPEMRK  445 (450)
T ss_dssp             HHSSGGGGC-
T ss_pred             HHhCCHHHHH
Confidence            6666655443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.98  E-value=2.7e-29  Score=253.27  Aligned_cols=376  Identities=15%  Similarity=0.081  Sum_probs=297.0

Q ss_pred             hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      |..+..+..+|..+...|++++|+..|++++..                .|....+++.+|.++...|++++|+..|+++
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            567888999999999999999999999999987                2233577889999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH---HH---------HHHHHHHHHHH
Q 006812          234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV---EV---------AHDRRLLGVIY  301 (630)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~---------~~~~~~la~~~  301 (630)
                      ++..        |....++..+|.+|...|++++|+.+|+++++..+     +.+   ..         ...+..+|.++
T Consensus        87 l~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~  153 (450)
T 2y4t_A           87 IQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-----SENEEKEAQSQLIKSDEMQRLRSQALNA  153 (450)
T ss_dssp             HHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8653        33367899999999999999999999999987432     222   11         11244558889


Q ss_pred             hccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh
Q 006812          302 SGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN  381 (630)
Q Consensus       302 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~  381 (630)
                      ...|++++|+.+|++++..      .|....++..+|.+|...|++++|+..+++++...+.+    ..++..+|.++..
T Consensus       154 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~  223 (450)
T 2y4t_A          154 FGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN----TEAFYKISTLYYQ  223 (450)
T ss_dssp             HHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----HHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Confidence            9999999999999999886      56678889999999999999999999999999876544    4589999999999


Q ss_pred             hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-
Q 006812          382 QEKFADAKRCLEIACGILDKKETISPEEVADA---------YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-  451 (630)
Q Consensus       382 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  451 (630)
                      .|++++|+.++++++.+..     +.+.....         ...+|.++...|++++|+.+|++++.+     .+..+. 
T Consensus       224 ~g~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~  293 (450)
T 2y4t_A          224 LGDHELSLSEVRECLKLDQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEY  293 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHH
T ss_pred             cCCHHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHH
Confidence            9999999999999987642     11222222         234499999999999999999999986     233333 


Q ss_pred             -hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812          452 -GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP  530 (630)
Q Consensus       452 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  530 (630)
                       ...+..+|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+..|++++++       
T Consensus       294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------  358 (450)
T 2y4t_A          294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-------  358 (450)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence             457899999999999999999999999984        3556678999999999999999999999999983       


Q ss_pred             CCHHHHHHHHHHHH------------HHHhcC-----CHHHHHHHHHH-HHHHHHHcCCCchhHHHHHHHHHHHHHHHhc
Q 006812          531 HHADSIEACQNLSK------------AYSSMG-----SYTLAIEFQQR-AIDAWESHGPSAQDELREARRLLEQLKIKAS  592 (630)
Q Consensus       531 ~~~~~~~~~~~la~------------~~~~~g-----~~~~A~~~~~~-al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  592 (630)
                       .|+...++..++.            .|...|     +.+++.+.|++ +++..+...+. ......|...|..+.+...
T Consensus       359 -~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~-~~~~~~a~~~~~~i~~ay~  436 (450)
T 2y4t_A          359 -NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN-EEEKKKAEKKFIDIAAAKE  436 (450)
T ss_dssp             -SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             -CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHHH
Confidence             3444567777774            455556     56677888876 54433332221 2224567777777766655


Q ss_pred             CCC
Q 006812          593 GAS  595 (630)
Q Consensus       593 ~~~  595 (630)
                      .+.
T Consensus       437 ~L~  439 (450)
T 2y4t_A          437 VLS  439 (450)
T ss_dssp             HSS
T ss_pred             HhC
Confidence            553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-28  Score=252.02  Aligned_cols=365  Identities=14%  Similarity=0.079  Sum_probs=298.3

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      ..++..+|.++...| ++++|+..++++++..          |....++..+|.++...|++++|+..|++++.......
T Consensus        39 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           39 PVFYSNLSACYVSVG-DLKKVVEMSTKALELK----------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             HHHHHhHHHHHHHHh-hHHHHHHHHHHHhccC----------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            678999999999999 9999999999999864          23457788999999999999999999999876532000


Q ss_pred             h-------------------------------------------cCCCCCCccc--------------------hhhHHH
Q 006812          192 E-------------------------------------------EGLGGSVEDI--------------------KPIMHA  208 (630)
Q Consensus       192 ~-------------------------------------------~~~~~~~~~~--------------------~~~~~~  208 (630)
                      .                                           ....+..+..                    .+....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (514)
T 2gw1_A          108 ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD  187 (514)
T ss_dssp             GGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHH
Confidence            0                                           0000000000                    012256


Q ss_pred             HHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHh--ccc----hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812          209 VHLELANVKTA---MGRREEALEHLQKCLEIKELIL--EED----SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH  279 (630)
Q Consensus       209 ~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  279 (630)
                      .++.+|.++..   .|++++|+..|+++++..+...  .++    .|....++..+|.++...|++++|+.++++++...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  267 (514)
T 2gw1_A          188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF  267 (514)
T ss_dssp             HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            67778888876   8999999999999998554433  122    26678899999999999999999999999999853


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          280 KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVR  359 (630)
Q Consensus       280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  359 (630)
                      +        . ..++..+|.++...|++++|+.++++++..      .|....++..+|.++...|++++|+..+++++.
T Consensus       268 ~--------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  332 (514)
T 2gw1_A          268 P--------R-VNSYIYMALIMADRNDSTEYYNYFDKALKL------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE  332 (514)
T ss_dssp             C--------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             c--------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            2        2 677889999999999999999999998775      566677899999999999999999999999999


Q ss_pred             HhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          360 QTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       360 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                      ..+.+.    .++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++.
T Consensus       333 ~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          333 LDPENI----FPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             TCSSCS----HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            766543    388999999999999999999999998764        23347889999999999999999999999999


Q ss_pred             HHHhCCCCCCchhHHHHHHHHHHHH---cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH
Q 006812          440 LLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV  516 (630)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  516 (630)
                      +.+.... ......++..+|.++..   .|++++|+.++++++.+        .|....++..+|.++...|++++|..+
T Consensus       401 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (514)
T 2gw1_A          401 LENKLDG-IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITL  471 (514)
T ss_dssp             HHHTSSS-CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhccch-HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            8765522 11124588999999999   99999999999999984        355567889999999999999999999


Q ss_pred             HHHHHHH
Q 006812          517 FAFAKDI  523 (630)
Q Consensus       517 ~~~al~~  523 (630)
                      |++++++
T Consensus       472 ~~~a~~~  478 (514)
T 2gw1_A          472 FEESADL  478 (514)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999985

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=5e-28  Score=236.18  Aligned_cols=329  Identities=15%  Similarity=0.050  Sum_probs=268.7

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      +..+..+|.++...|++++|+..|++++..                .|....+++.+|.++...|++++|+..|++++++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            456788999999999999999999999987                2233467889999999999999999999999865


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH------------HHHHHhcc
Q 006812          237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRL------------LGVIYSGL  304 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------la~~~~~~  304 (630)
                      .        |....++..+|.++...|++++|+..|++++.+.+.     .......+..            +|.++...
T Consensus        67 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  133 (359)
T 3ieg_A           67 K--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-----EQEEKEAESQLVKADEMQRLRSQALDAFDG  133 (359)
T ss_dssp             C--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             C--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCc-----ccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3        333578999999999999999999999999875330     0022333333            48999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812          305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK  384 (630)
Q Consensus       305 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~  384 (630)
                      |++++|+.++++++..      .|....++..+|.++...|++++|+..+++++...+.+    ..++..+|.++...|+
T Consensus       134 ~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          134 ADYTAAITFLDKILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN----TEAFYKISTLYYQLGD  203 (359)
T ss_dssp             TCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC----HHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence            9999999999999886      56677899999999999999999999999999865544    4589999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch--hH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVAD---------AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE--GS  453 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~  453 (630)
                      +++|...++++++....     .+....         ....+|.++...|++++|+..+++++...     +..+.  ..
T Consensus       204 ~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~  273 (359)
T 3ieg_A          204 HELSLSEVRECLKLDQD-----HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVR  273 (359)
T ss_dssp             HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHH
Confidence            99999999999876432     122211         23456899999999999999999999862     23332  24


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      ++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+|++++++        +|
T Consensus       274 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p  337 (359)
T 3ieg_A          274 SKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NE  337 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CC
Confidence            5678999999999999999999999984        3555679999999999999999999999999983        45


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 006812          534 DSIEACQNLSKAYSSMG  550 (630)
Q Consensus       534 ~~~~~~~~la~~~~~~g  550 (630)
                      +...+...++.++...+
T Consensus       338 ~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          338 NDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHH
Confidence            55567777777766544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=6.5e-28  Score=249.21  Aligned_cols=364  Identities=15%  Similarity=0.096  Sum_probs=283.6

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      +|....++..+|.++...| ++++|+..|++++.+.+          ....++..+|.++...|++++|+..|+ ++.+.
T Consensus        55 ~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~  122 (537)
T 3fp2_A           55 DPNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKP----------DHSKALLRRASANESLGNFTDAMFDLS-VLSLN  122 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--
T ss_pred             CCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC----------chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC
Confidence            3667789999999999999 99999999999998652          345678899999999999999999995 44321


Q ss_pred             ------------------------hHhhhcC---CCCCC-------------------------ccchhhHHHHHHHHHH
Q 006812          188 ------------------------GRLEEEG---LGGSV-------------------------EDIKPIMHAVHLELAN  215 (630)
Q Consensus       188 ------------------------~~~~~~~---~~~~~-------------------------~~~~~~~~~~~~~l~~  215 (630)
                                              +......   .....                         .+..+........++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (537)
T 3fp2_A          123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR  202 (537)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence                                    1111100   00000                         0000111112222222


Q ss_pred             --------HHHHcCCHHHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812          216 --------VKTAMGRREEALEHLQKCLEIKELILEEDSR----ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL  283 (630)
Q Consensus       216 --------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  283 (630)
                              .....|++++|+..|+++++..     ++++    ..+.++..+|.++...|++++|+.++++++...+   
T Consensus       203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---  274 (537)
T 3fp2_A          203 LYSATDEGYLVANDLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP---  274 (537)
T ss_dssp             HHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-----CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---
Confidence                    2233346666776666666433     2222    3467899999999999999999999999998632   


Q ss_pred             CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                           . ..++..+|.++...|++++|+.++++++..      .|....++..+|.++...|++++|+..+++++...+.
T Consensus       275 -----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  342 (537)
T 3fp2_A          275 -----T-PNSYIFLALTLADKENSQEFFKFFQKAVDL------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE  342 (537)
T ss_dssp             -----C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             -----C-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence                 2 467889999999999999999999999887      5667888999999999999999999999999997665


Q ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812          364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK  443 (630)
Q Consensus       364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  443 (630)
                      +.    .++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+|++++.+.+.
T Consensus       343 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          343 NV----YPYIQLACLLYKQGKFTESEAFFNETKLKF--------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             CS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            54    478999999999999999999999998874        344578899999999999999999999999999876


Q ss_pred             CCCCCCchhHHHHHHHHHHHHc----------CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHH
Q 006812          444 LPQAQHSEGSVSARIGWLLLLT----------GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSA  513 (630)
Q Consensus       444 ~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  513 (630)
                      ... .......+..+|.++...          |++++|+.+|+++++.        +|....++..+|.+|...|++++|
T Consensus       411 ~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A  481 (537)
T 3fp2_A          411 QEK-IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEA  481 (537)
T ss_dssp             CSS-CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             chh-hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHH
Confidence            633 222344568889999999          9999999999999984        355567899999999999999999


Q ss_pred             HHHHHHHHHHH
Q 006812          514 AQVFAFAKDIM  524 (630)
Q Consensus       514 ~~~~~~al~~~  524 (630)
                      +.+|++++++.
T Consensus       482 ~~~~~~al~~~  492 (537)
T 3fp2_A          482 IELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999964

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.97  E-value=8.1e-28  Score=239.33  Aligned_cols=314  Identities=13%  Similarity=0.138  Sum_probs=274.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812          246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG  325 (630)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  325 (630)
                      +..+..+..+|..+...|++++|+.+|++++++.+    .+....+.++..+|.+|...|++++|+.++++++.+.+..+
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  120 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN  120 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            45567788999999999999999999999999733    13334567899999999999999999999999999999988


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhcc-----------------HH
Q 006812          326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEK-----------------FA  386 (630)
Q Consensus       326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~-----------------~~  386 (630)
                      +.+....++..+|.+|...|++++|+.++++++......  .+..+.++..+|.+|...|+                 ++
T Consensus       121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~  200 (411)
T 4a1s_A          121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT  200 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence            889999999999999999999999999999999876543  45567899999999999999                 99


Q ss_pred             HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC
Q 006812          387 DAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG  466 (630)
Q Consensus       387 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  466 (630)
                      +|+.++++++.+.....  +++....++..+|.++...|++++|+.++++++.+..... .......++..+|.+|...|
T Consensus       201 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g  277 (411)
T 4a1s_A          201 RAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLG  277 (411)
T ss_dssp             HHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCc
Confidence            99999999999887653  4567888999999999999999999999999999987753 22223557899999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812          467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY  546 (630)
Q Consensus       467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  546 (630)
                      ++++|+.++++++.+....  .+......++..+|.++...|++++|+.++++++.+.....  +.+....++..+|.+|
T Consensus       278 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~  353 (411)
T 4a1s_A          278 QFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARACWSLGNAH  353 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHH
Confidence            9999999999999988765  34556678899999999999999999999999999987652  3466678999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHcC
Q 006812          547 SSMGSYTLAIEFQQRAIDAWESHG  570 (630)
Q Consensus       547 ~~~g~~~~A~~~~~~al~~~~~~~  570 (630)
                      ...|++++|..+|++++++++..+
T Consensus       354 ~~~g~~~~A~~~~~~al~~~~~~~  377 (411)
T 4a1s_A          354 SAIGGHERALKYAEQHLQLAXXXX  377 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999876654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.97  E-value=1.8e-27  Score=236.83  Aligned_cols=312  Identities=17%  Similarity=0.185  Sum_probs=274.1

Q ss_pred             hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      +..+..+..+|..+...|++++|+.+|++++.+         .+   +.....+.+++.+|.+|...|++++|+.+|+++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA---------GT---EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD  112 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CC---SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---------cc---cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            456677888999999999999999999999997         11   223345678899999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc-------
Q 006812          234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE-------  306 (630)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------  306 (630)
                      +++.+..  .+.+....++..+|.+|...|++++|+.++++++++.+...  +.+....++..+|.+|...|+       
T Consensus       113 l~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~  188 (411)
T 4a1s_A          113 LTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNP  188 (411)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccc
Confidence            9998776  66788899999999999999999999999999999988753  456788899999999999999       


Q ss_pred             ----------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Q 006812          307 ----------HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFIS  374 (630)
Q Consensus       307 ----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~  374 (630)
                                +++|+.++++++.+....+..+....++..+|.+|...|++++|+.++++++...+..  ......++..
T Consensus       189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  268 (411)
T 4a1s_A          189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN  268 (411)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence                      9999999999999998888888889999999999999999999999999999987653  3445678999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812          375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV  454 (630)
Q Consensus       375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  454 (630)
                      +|.++...|++++|+.++++++.+.....  +......++..+|.++...|++++|+.++++++.+...... ......+
T Consensus       269 la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~  345 (411)
T 4a1s_A          269 LGNSHIFLGQFEDAAEHYKRTLALAVELG--EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-RIGEARA  345 (411)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHH
Confidence            99999999999999999999999987653  44566889999999999999999999999999999887632 2223567


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812          455 SARIGWLLLLTGKVPQAIPYLESAAERLKE  484 (630)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  484 (630)
                      +..+|.+|...|++++|..++++++++..+
T Consensus       346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          346 CWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999997543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=3.8e-27  Score=227.71  Aligned_cols=311  Identities=16%  Similarity=0.174  Sum_probs=267.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS  328 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  328 (630)
                      ...+...|..+...|++++|+.+|+++++..+    .+......++..+|.++...|++++|+.++++++.+....++.+
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   80 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence            45677889999999999999999999999733    23334578899999999999999999999999999999888888


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhcc--------------------HH
Q 006812          329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEK--------------------FA  386 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~--------------------~~  386 (630)
                      ....++..+|.++...|++++|+..+++++...+..  ....+.++..+|.++...|+                    ++
T Consensus        81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (338)
T 3ro2_A           81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ  160 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence            889999999999999999999999999999987654  34557789999999999999                    99


Q ss_pred             HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC
Q 006812          387 DAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG  466 (630)
Q Consensus       387 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  466 (630)
                      +|..++++++.+.....  +.+....++..+|.++...|++++|+.++++++.+.+... .......++..+|.++...|
T Consensus       161 ~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g  237 (338)
T 3ro2_A          161 AAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLG  237 (338)
T ss_dssp             HHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcC
Confidence            99999999999887654  4567788999999999999999999999999999987753 22223567899999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812          467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY  546 (630)
Q Consensus       467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  546 (630)
                      ++++|+.++++++.+....  .+.+....++..+|.++...|++++|+.++++++.+.....  +.+....++..+|.+|
T Consensus       238 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~  313 (338)
T 3ro2_A          238 EFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAY  313 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence            9999999999999988765  34566678899999999999999999999999999887653  3456678999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHcC
Q 006812          547 SSMGSYTLAIEFQQRAIDAWESHG  570 (630)
Q Consensus       547 ~~~g~~~~A~~~~~~al~~~~~~~  570 (630)
                      ...|++++|..++++++++.+..|
T Consensus       314 ~~~g~~~~A~~~~~~a~~~~~~~~  337 (338)
T 3ro2_A          314 TALGNHDQAMHFAEKHLEISREVG  337 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHC-----
T ss_pred             HHcCChHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999887665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.7e-28  Score=247.56  Aligned_cols=347  Identities=14%  Similarity=0.022  Sum_probs=259.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      +.+.++..+++.+......  .+  +...+..++.+|.++..+|++++|+++|++|+++.+......       ..+...
T Consensus        26 ~~~~~l~~~e~~~~~~~~~--~~--~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~-------~~~~~~   94 (472)
T 4g1t_A           26 EGENSLDDFEDKVFYRTEF--QN--REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ-------AEIRSL   94 (472)
T ss_dssp             TTCCCHHHHHHHHHHHTTS--CC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG-------CTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHh--CC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc-------cchHHH
Confidence            6677788887776655433  22  234567889999999999999999999999999987764432       134556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhhcCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV--LNFKEALPFGLKALEIHKKGLGH  285 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~  285 (630)
                      .++.++|.+|..+|++++|+.++++++++.+...+..++..+.++..+|.++...  ++|++|+.+|++++++.+     
T Consensus        95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-----  169 (472)
T 4g1t_A           95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-----  169 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-----
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-----
Confidence            7889999999999999999999999999998876666666778888888877665  479999999999998754     


Q ss_pred             CCHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHH
Q 006812          286 NSVEVAHDRRLLGVI---YSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI----ALGKFEEAINTLKGVV  358 (630)
Q Consensus       286 ~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l  358 (630)
                      +++.   ++..++.+   +...++.++|++.+++++++      +|....++..+|..+.    ..|++++|+.++++++
T Consensus       170 ~~~~---~~~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al  240 (472)
T 4g1t_A          170 KNPE---FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL  240 (472)
T ss_dssp             TCHH---HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred             CCHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4444   34445555   44567788999999999987      5666677777776554    4567889999999999


Q ss_pred             HHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc--------------
Q 006812          359 RQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM--------------  424 (630)
Q Consensus       359 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------  424 (630)
                      ...+..    ..++..+|.+|...|++++|+..+++++++.        |..+.++..+|.+|...              
T Consensus       241 ~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~  308 (472)
T 4g1t_A          241 EKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYI--------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG  308 (472)
T ss_dssp             HHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            865544    4488999999999999999999999998875        55667888888887653              


Q ss_pred             -----CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812          425 -----NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN  499 (630)
Q Consensus       425 -----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  499 (630)
                           +.+++|+..+++++.+.       +....++..+|.++...|++++|+.+|++++++     .+++.....++..
T Consensus       309 ~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~  376 (472)
T 4g1t_A          309 KRKLLELIGHAVAHLKKADEAN-------DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLR  376 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHhhcC-------CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHH
Confidence                 23456666666666541       222346788899999999999999999998873     2232333345566


Q ss_pred             HHHH-HHHcCChhHHHHHHHHHHHH
Q 006812          500 LGAA-YLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       500 l~~~-~~~~g~~~~A~~~~~~al~~  523 (630)
                      +|.+ +...|++++|+.+|++++.+
T Consensus       377 ~~~~~~~~~~~~~~Ai~~y~kal~i  401 (472)
T 4g1t_A          377 YGNFQLYQMKCEDKAIHHFIEGVKI  401 (472)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            6654 45678899999999998875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=3.2e-27  Score=230.43  Aligned_cols=332  Identities=17%  Similarity=0.119  Sum_probs=269.9

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE  191 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  191 (630)
                      ...++.+|..++..| ++++|+..|+++++..+          ....++..+|.++...|++++|+..+++++.+     
T Consensus         3 ~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAG-QLADALSQFHAAVDGDP----------DNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----   66 (359)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCc----------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            467889999999999 99999999999998642          23568889999999999999999999999988     


Q ss_pred             hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHH------------HHHHHH
Q 006812          192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANR------------DLAEAF  259 (630)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------~la~~~  259 (630)
                                 .|....++..+|.++...|++++|+..|++++++.+     .......++.            .+|.++
T Consensus        67 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (359)
T 3ieg_A           67 -----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-----SEQEEKEAESQLVKADEMQRLRSQALDA  130 (359)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----cccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       223346788999999999999999999999985432     0002233333            348999


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812          260 VAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN  339 (630)
Q Consensus       260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  339 (630)
                      ...|++++|+.+++++++..+        ....++..+|.++...|++++|+..+++++..      .|....++..+|.
T Consensus       131 ~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~  196 (359)
T 3ieg_A          131 FDGADYTAAITFLDKILEVCV--------WDAELRELRAECFIKEGEPRKAISDLKAASKL------KSDNTEAFYKIST  196 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CSCCHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Confidence            999999999999999998643        23467889999999999999999999998875      5667789999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhcchHH--------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHH
Q 006812          340 MQIALGKFEEAINTLKGVVRQTEKESETR--------ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVA  411 (630)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  411 (630)
                      ++...|++++|+..++++++..+......        ......+|.++...|++++|+..+++++.....    ++....
T Consensus       197 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~  272 (359)
T 3ieg_A          197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----VAEYTV  272 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----SHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----chHHHH
Confidence            99999999999999999999876654421        112345689999999999999999999886532    233445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      ..+..+|.++...|++++|+.++++++++     .+.  ...++..+|.++...|++++|+.+|++++++        .|
T Consensus       273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p  337 (359)
T 3ieg_A          273 RSKERICHCFSKDEKPVEAIRICSEVLQM-----EPD--NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NE  337 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CC
Confidence            67888999999999999999999999986     222  3468899999999999999999999999983        35


Q ss_pred             cHHHHHHHHHHHHHHcC
Q 006812          492 GVGYIYNNLGAAYLELD  508 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~~g  508 (630)
                      ....+...++.++...+
T Consensus       338 ~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          338 NDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHH
Confidence            55556667777665443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=1e-26  Score=224.63  Aligned_cols=309  Identities=19%  Similarity=0.209  Sum_probs=268.9

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      ...+...|..+...|++++|+.+|++++..         .+   +.......++..+|.++...|++++|+.++++++++
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQV---------GT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---------Cc---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            446678999999999999999999999997         11   223445678899999999999999999999999999


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc----------
Q 006812          237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE----------  306 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------  306 (630)
                      .+..  .+.+..+.++..+|.+|...|++++|+.++++++++.+...  +.+....++..+|.++...|+          
T Consensus        73 ~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (338)
T 3ro2_A           73 ARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDT  148 (338)
T ss_dssp             HHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred             hhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence            8876  66778899999999999999999999999999999988642  445667889999999999999          


Q ss_pred             ----------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Q 006812          307 ----------HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFIS  374 (630)
Q Consensus       307 ----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~  374 (630)
                                +++|+.++++++.+....+..+....++..+|.++...|++++|+.++++++...+..  ....+.++..
T Consensus       149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  228 (338)
T 3ro2_A          149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  228 (338)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence                      9999999999999998888878889999999999999999999999999999887653  3445778999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812          375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV  454 (630)
Q Consensus       375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  454 (630)
                      +|.++...|++++|..++++++.+.....  +++....++..+|.++...|++++|+.++++++.+...... ......+
T Consensus       229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~  305 (338)
T 3ro2_A          229 LGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRA  305 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-cHHHHHH
Confidence            99999999999999999999999887653  45567889999999999999999999999999999877632 2223567


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812          455 SARIGWLLLLTGKVPQAIPYLESAAERLKE  484 (630)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  484 (630)
                      +..+|.++...|++++|..++++++++..+
T Consensus       306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          306 CWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            889999999999999999999999986543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=4.4e-26  Score=231.51  Aligned_cols=378  Identities=16%  Similarity=0.138  Sum_probs=309.3

Q ss_pred             hHHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhh----ccChHHHHHHHH
Q 006812          110 ELGLVGLKIALKLDQ----EGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYS----FKRFSDSLGYLS  181 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~  181 (630)
                      ..+.+++.+|..|..    .+ ++++|+.+|+++.+.            ..+.+++.+|.+|..    .+++++|+.+|+
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQ------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            345778889999888    67 999999999999753            124577889999999    999999999999


Q ss_pred             HHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 006812          182 KANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTA----MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAE  257 (630)
Q Consensus       182 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  257 (630)
                      ++.+.                  ....+++.+|.+|..    .+++++|+.+|+++.+.       .   ...++..+|.
T Consensus       104 ~a~~~------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~  155 (490)
T 2xm6_A          104 KAALK------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------G---RDSGQQSMGD  155 (490)
T ss_dssp             HHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHH
T ss_pred             HHHHC------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHH
Confidence            99764                  113567789999999    89999999999998742       1   2577899999


Q ss_pred             HHHH----hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          258 AFVA----VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG----LEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       258 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      +|..    .+++++|+.+|+++++.       .+   ..++..+|.+|..    .+++++|+.+|+++.+.        .
T Consensus       156 ~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~  217 (490)
T 2xm6_A          156 AYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------G  217 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------C
Confidence            9998    88999999999999863       12   4678899999998    89999999999998763        2


Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHh
Q 006812          330 LLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN----QEKFADAKRCLEIACGILDK  401 (630)
Q Consensus       330 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~  401 (630)
                      ...++..+|.+|..    .+++++|+.+|+++++..   .   ..++..+|.+|..    .+++++|+.+|+++.+.   
T Consensus       218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---  288 (490)
T 2xm6_A          218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---  288 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---
Confidence            35688899999997    899999999999998742   1   3488899999998    89999999999998653   


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC---ChhhHHH
Q 006812          402 KETISPEEVADAYSEISMQYESM-----NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG---KVPQAIP  473 (630)
Q Consensus       402 ~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~  473 (630)
                             ....++..+|.+|...     +++++|+.+|+++.+.     +    ...++.++|.+|...|   ++++|+.
T Consensus       289 -------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~----~~~a~~~lg~~y~~~g~~~~~~~A~~  352 (490)
T 2xm6_A          289 -------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----G----DATAQANLGAIYFRLGSEEEHKKAVE  352 (490)
T ss_dssp             -------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             -------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----C----CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence                   1235788999999998     9999999999999873     1    2357899999999877   8999999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-
Q 006812          474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS-  548 (630)
Q Consensus       474 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-  548 (630)
                      +|+++++.          ....+++++|.+|..    .+++++|+.+|+++.+.       .+   ..++.+||.+|.. 
T Consensus       353 ~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~---~~a~~~Lg~~y~~g  412 (490)
T 2xm6_A          353 WFRKAAAK----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-------GL---SAAQVQLGEIYYYG  412 (490)
T ss_dssp             HHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHT
T ss_pred             HHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcC
Confidence            99999872          235689999999999    89999999999999872       23   3689999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHHHH-----HH-----cCCCchhHHHHHHHHHHHHHHHh
Q 006812          549 ---MGSYTLAIEFQQRAIDAW-----ES-----HGPSAQDELREARRLLEQLKIKA  591 (630)
Q Consensus       549 ---~g~~~~A~~~~~~al~~~-----~~-----~~~~~~~~~~~A~~~~~~~~~~~  591 (630)
                         .+++++|..+|+++++..     ..     ++.-.......+.....+..++.
T Consensus       413 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~  468 (490)
T 2xm6_A          413 LGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY  468 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence               899999999999999876     11     34334455566665555554443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.96  E-value=3.6e-25  Score=217.44  Aligned_cols=344  Identities=11%  Similarity=0.020  Sum_probs=267.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHhcCHHHHH-----------HHHHHHHHH
Q 006812          211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDL-AEAFVAVLNFKEAL-----------PFGLKALEI  278 (630)
Q Consensus       211 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~-----------~~~~~al~~  278 (630)
                      .+-...+...+++++|...++++.+.....  ..++.....+..+ .......++++.+.           ..+++.-..
T Consensus        16 l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~   93 (383)
T 3ulq_A           16 INEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK   93 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc
Confidence            344556778999999999999976655433  2333333222222 22233344455554           555543221


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          279 HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVV  358 (630)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  358 (630)
                      ....   +.......++.+|.++...|++++|+.++++++.+.+..++.+....++..+|.+|...|++++|+.++++++
T Consensus        94 ~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al  170 (383)
T 3ulq_A           94 QARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY  170 (383)
T ss_dssp             THHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1110   1111223456689999999999999999999999988887778889999999999999999999999999999


Q ss_pred             HHhhhc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          359 RQTEKE---SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK  435 (630)
Q Consensus       359 ~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  435 (630)
                      +..+..   .+..+.++..+|.+|...|++++|+.++++++.+.....  +++..+.++.++|.+|...|++++|+.+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  248 (383)
T 3ulq_A          171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFK  248 (383)
T ss_dssp             HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            988765   345678999999999999999999999999999987663  567788899999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHH
Q 006812          436 RTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQ  515 (630)
Q Consensus       436 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  515 (630)
                      +++.+.+.... .+....++.++|.++...|++++|+.++++++++....   .++.....+..+|.+|...|++    .
T Consensus       249 ~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~----~  320 (383)
T 3ulq_A          249 RAIAVFEESNI-LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDE----E  320 (383)
T ss_dssp             HHHHHHHHTTC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCH----H
T ss_pred             HHHHHHHhhcc-chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH----H
Confidence            99999887643 12336788999999999999999999999999988776   3455555578899999999995    3


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812          516 VFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       516 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                      .+++++.+.++.  ...+....++..+|.+|...|++++|..+|++++++.+.+..
T Consensus       321 ~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          321 AIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             HHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            444555544443  356777889999999999999999999999999999887544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.95  E-value=1e-24  Score=214.22  Aligned_cols=345  Identities=14%  Similarity=0.036  Sum_probs=264.5

Q ss_pred             HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHH--HHHHHHcCCHHHHH---------
Q 006812          159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLEL--ANVKTAMGRREEAL---------  227 (630)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~---------  227 (630)
                      ...+-...+...+++++|...++++......+..+          +... .++.+  .......++++.+.         
T Consensus        14 ~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~----------~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~   82 (383)
T 3ulq_A           14 EKINEWYMYIRRFSIPDAEYLRREIKQELDQMEED----------QDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPR   82 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCC----------HHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCC
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccc----------hHHH-HHHHHHHHHHHHHHhhcCcccccccccccc
Confidence            33444556678999999999999987765443211          1111 22222  22222334444443         


Q ss_pred             --HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 006812          228 --EHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE  305 (630)
Q Consensus       228 --~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  305 (630)
                        +.+++.-.....   .+.......++.+|.++...|++++|+.+|++++.+....  ++.+..+.++..+|.+|...|
T Consensus        83 ~~~~~~~i~~~~~~---~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~  157 (383)
T 3ulq_A           83 LSDLLLEIDKKQAR---LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMK  157 (383)
T ss_dssp             HHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHhcCCC---chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcC
Confidence              444432211100   0111123355669999999999999999999999987754  245568899999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhh
Q 006812          306 EHQKALEQNELSQKVLKTWGL-SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQ  382 (630)
Q Consensus       306 ~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~  382 (630)
                      ++++|+.++++++++....+. .+....++.++|.+|...|++++|+.++++++...+..  .+..+.++.++|.+|...
T Consensus       158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence            999999999999999999887 57888999999999999999999999999999987654  455677999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 006812          383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL  462 (630)
Q Consensus       383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  462 (630)
                      |++++|+.++++++.+.....  +.+..+.++.++|.+|...|++++|..++++++.+.+...++  .....+..+|.++
T Consensus       238 g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~l~~~~  313 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV--IYLSEFEFLKSLY  313 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence            999999999999999987654  325678999999999999999999999999999998876331  1223367799999


Q ss_pred             HHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812          463 LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  529 (630)
                      ...|++    ..+++++...++.  ...+....++..+|.+|...|++++|..+|++++.+.++...
T Consensus       314 ~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          314 LSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             TSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             hCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            999995    4555555555554  456778889999999999999999999999999999877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=3.6e-27  Score=230.91  Aligned_cols=310  Identities=15%  Similarity=0.097  Sum_probs=245.9

Q ss_pred             HHHHcCCHHHHHH-HHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812          216 VKTAMGRREEALE-HLQKCLEIKELILEEDSRE-LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD  293 (630)
Q Consensus       216 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  293 (630)
                      ++...|+|++|+. .|++++.+.     ++.|. ....+..+|.++...|++++|+.+|+++++..        |....+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~  100 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--------PKHMEA  100 (368)
T ss_dssp             ------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------TTCHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHH
Confidence            6677899999999 998887542     33332 24568899999999999999999999999743        334567


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH-----
Q 006812          294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR-----  368 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-----  368 (630)
                      +..+|.++...|++++|+.++++++.+      .|....++..+|.++...|++++|+..+++++...+......     
T Consensus       101 ~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  174 (368)
T 1fch_A          101 WQYLGTTQAENEQELLAISALRRCLEL------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE  174 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            889999999999999999999999987      566788999999999999999999999999999776544321     


Q ss_pred             -------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          369 -------ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE--VADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       369 -------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                             ...+..++.++ ..|++++|+.++++++...        |.  ...++..+|.++...|++++|+.++++++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  245 (368)
T 1fch_A          175 GAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD--------PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS  245 (368)
T ss_dssp             -----------CTTHHHH-HHHHHHHHHHHHHHHHHHS--------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                   11122466666 8999999999999998865        23  467889999999999999999999999998


Q ss_pred             HHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812          440 LLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF  519 (630)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  519 (630)
                      +     .+.  ...++..+|.++...|++++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++
T Consensus       246 ~-----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  310 (368)
T 1fch_A          246 V-----RPN--DYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLE  310 (368)
T ss_dssp             H-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             h-----CcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7     222  2468899999999999999999999999984        355667899999999999999999999999


Q ss_pred             HHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          520 AKDIMDVSLGP---HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       520 al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      ++.+.....++   .++....++..+|.+|..+|++++|..+++++++.+..
T Consensus       311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  362 (368)
T 1fch_A          311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT  362 (368)
T ss_dssp             HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred             HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence            99987543211   12233678999999999999999999999999998876

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=221.69  Aligned_cols=296  Identities=13%  Similarity=0.034  Sum_probs=249.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .++..+|..+...|++++|+..|+++++..        |....++..++.++...|++++|+.+++++++..+       
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------   87 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-------   87 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-------
Confidence            345678999999999999999999988543        33345677888999999999999999999998643       


Q ss_pred             HHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          288 VEVAHDRRLLGVIYSGLE-EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                       ....++..+|.++...| ++++|+.++++++.+      .|....++..+|.++...|++++|+..+++++...+....
T Consensus        88 -~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  160 (330)
T 3hym_B           88 -SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL  160 (330)
T ss_dssp             -TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH
T ss_pred             -CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH
Confidence             23467889999999999 999999999998875      5667788999999999999999999999999998766543


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ  446 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  446 (630)
                          .+..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++.+.+...+
T Consensus       161 ----~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  228 (330)
T 3hym_B          161 ----PMLYIGLEYGLTNNSKLAERFFSQALSIA--------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN  228 (330)
T ss_dssp             ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred             ----HHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence                67779999999999999999999998764        345678999999999999999999999999999876644


Q ss_pred             CCC--chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          447 AQH--SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       447 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                      ...  ....++..+|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+.+|+++++  
T Consensus       229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  298 (330)
T 3hym_B          229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--  298 (330)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--
T ss_pred             cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--
Confidence            332  22568899999999999999999999999984        244556889999999999999999999999987  


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHH-HhcCCHH
Q 006812          525 DVSLGPHHADSIEACQNLSKAY-SSMGSYT  553 (630)
Q Consensus       525 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  553 (630)
                            ..|+...++..++.++ ...|+.+
T Consensus       299 ------~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          299 ------LRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             ------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             ------cCCCchHHHHHHHHHHHHHhCchh
Confidence                  3455567899999988 5666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=9.3e-27  Score=227.99  Aligned_cols=317  Identities=13%  Similarity=0.100  Sum_probs=244.9

Q ss_pred             HHHHhCCChHHHHH-HHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCC
Q 006812          121 KLDQEGGDPEMTLS-FANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSV  199 (630)
Q Consensus       121 ~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  199 (630)
                      ++...+ ++++|+. .|++++.+.+..     + ...+..++.+|.++...|++++|+..|++++..             
T Consensus        34 ~~~~~~-~~~~a~~~~~~~a~~~~~~~-----~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------------   93 (368)
T 1fch_A           34 AHPWLS-DYDDLTSATYDKGYQFEEEN-----P-LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-------------   93 (368)
T ss_dssp             -------------CHHHHCCCCCCSSC-----T-TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-------------
T ss_pred             hhHHHH-HHHHHHhhhhhHHHhcCCCC-----c-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------
Confidence            344445 9999999 999888654221     1 112445678999999999999999999999986             


Q ss_pred             ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812          200 EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH  279 (630)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  279 (630)
                         .|....+++.+|.++...|++++|+.+|++++++.        |....++..+|.+|...|++++|+..+++++.+.
T Consensus        94 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  162 (368)
T 1fch_A           94 ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT  162 (368)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             ---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence               23335678899999999999999999999999653        3336789999999999999999999999999865


Q ss_pred             hhhcCCCC--------HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh--HHHHHHHHHHHHHHcCCHHH
Q 006812          280 KKGLGHNS--------VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE--LLRAEIDAANMQIALGKFEE  349 (630)
Q Consensus       280 ~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~  349 (630)
                      +.......        ......+..++.++ ..|++++|+.++++++..      .|.  ...++..+|.++...|++++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~l~~~~~~~g~~~~  235 (368)
T 1fch_A          163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL------DPTSIDPDVQCGLGVLFNLSGEYDK  235 (368)
T ss_dssp             TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH------STTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh------CcCcccHHHHHHHHHHHHHcCCHHH
Confidence            43210000        00111122466666 899999999999999886      444  67889999999999999999


Q ss_pred             HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 006812          350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFET  429 (630)
Q Consensus       350 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  429 (630)
                      |+..+++++...+.+    ..++..+|.++...|++++|+.++++++.+.        |....++..+|.++...|++++
T Consensus       236 A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~  303 (368)
T 1fch_A          236 AVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHRE  303 (368)
T ss_dssp             HHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHH
Confidence            999999999975544    4589999999999999999999999998874        4556889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCC----CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          430 AISLLKRTLALLEKLPQAQ----HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       430 A~~~~~~al~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      |+.+|++++.+.+...++.    .....++..+|.++...|++++|..++.++++.+.+.++
T Consensus       304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence            9999999999977663221    112568899999999999999999999999998877654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=2.2e-24  Score=218.92  Aligned_cols=339  Identities=13%  Similarity=-0.000  Sum_probs=281.5

Q ss_pred             HHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhh----ccChHHHHHHHHH
Q 006812          111 LGLVGLKIALKLDQ----EGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYS----FKRFSDSLGYLSK  182 (630)
Q Consensus       111 ~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~  182 (630)
                      .+.+++.+|..|..    .+ ++++|+.+|+++.+.            ..+.+++.+|.+|..    .+++++|+.+|++
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  140 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALK------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL  140 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            35688999999998    77 999999999998753            124567889999998    8999999999999


Q ss_pred             HHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 006812          183 ANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTA----MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEA  258 (630)
Q Consensus       183 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  258 (630)
                      +.+.                  ....+++.+|.+|..    .+++++|+.+|+++.+.       .   ...++..+|.+
T Consensus       141 a~~~------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~  192 (490)
T 2xm6_A          141 AAEQ------------------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------G---NVWSCNQLGYM  192 (490)
T ss_dssp             HHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHH
T ss_pred             HHHC------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHH
Confidence            8764                  113567889999998    88999999999998753       1   25789999999


Q ss_pred             HHH----hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHcCCChhH
Q 006812          259 FVA----VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG----LEEHQKALEQNELSQKVLKTWGLSSEL  330 (630)
Q Consensus       259 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~  330 (630)
                      |..    .+++++|+.+|+++.+.       .+   ..++..+|.+|..    .+++++|+.+|+++.+.        ..
T Consensus       193 y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~  254 (490)
T 2xm6_A          193 YSRGLGVERNDAISAQWYRKSATS-------GD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--------GN  254 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--------TC
T ss_pred             HhcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CC
Confidence            998    89999999999999863       22   3567889999986    89999999999988763        33


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHh
Q 006812          331 LRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-----EKFADAKRCLEIACGILDK  401 (630)
Q Consensus       331 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~  401 (630)
                      ..++..+|.+|..    .+++++|+.+|+++.+..   +   ..++..+|.+|...     +++++|+.+++++.+..  
T Consensus       255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--  326 (490)
T 2xm6_A          255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---N---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--  326 (490)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---C---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence            5688899999998    999999999999997641   2   34888999999988     99999999999987641  


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHH
Q 006812          402 KETISPEEVADAYSEISMQYESMN---EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPY  474 (630)
Q Consensus       402 ~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  474 (630)
                              ...++..+|.+|...|   ++++|+.+|+++++.     +    ...+++++|.+|..    .+++++|+.+
T Consensus       327 --------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  389 (490)
T 2xm6_A          327 --------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----G----EKAAQFNLGNALLQGKGVKKDEQQAAIW  389 (490)
T ss_dssp             --------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             --------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence                    2367899999999866   899999999999873     1    34588999999999    8999999999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812          475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS  548 (630)
Q Consensus       475 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  548 (630)
                      |+++++.       .   ...++.+||.+|..    .+++++|..+|+++++..     ++.|....+..+++.++..
T Consensus       390 ~~~A~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          390 MRKAAEQ-------G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHhC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHh
Confidence            9999871       2   35688999999999    899999999999999864     1225566788888887664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=1.8e-25  Score=218.35  Aligned_cols=286  Identities=17%  Similarity=0.092  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812          248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS  327 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  327 (630)
                      ....+..+|..+...|++++|+.+|++++...+        ....++..+|.++...|++++|+.+|++++.+      .
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~  129 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--------GDAEAWQFLGITQAENENEQAAIVALQRCLEL------Q  129 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------C
Confidence            355688999999999999999999999998643        23577899999999999999999999999987      6


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH------HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET------RALVFISMGKALCNQEKFADAKRCLEIACGILDK  401 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  401 (630)
                      |....++..+|.+|...|++++|+..+++++...+.....      ....+..+|.++...|++++|+.++++++.+...
T Consensus       130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  209 (365)
T 4eqf_A          130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD  209 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred             CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence            7778899999999999999999999999999976654321      1344566799999999999999999999887421


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812          402 KETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAER  481 (630)
Q Consensus       402 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (630)
                      .      ....++..+|.++...|++++|+.+|++++++     .+.  ...++..+|.++...|++++|+.+|++++++
T Consensus       210 ~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  276 (365)
T 4eqf_A          210 M------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-----RPE--DYSLWNRLGATLANGDRSEEAVEAYTRALEI  276 (365)
T ss_dssp             S------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             c------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            0      04578899999999999999999999999987     222  3468899999999999999999999999984


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHhcCCHHHHHH
Q 006812          482 LKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD----SIEACQNLSKAYSSMGSYTLAIE  557 (630)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~  557 (630)
                              +|....++.++|.+|...|++++|+.+|++++.+.....++.++.    ...++..++.++..+|+.+.|..
T Consensus       277 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  348 (365)
T 4eqf_A          277 --------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA  348 (365)
T ss_dssp             --------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred             --------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence                    456678999999999999999999999999999887654433222    24789999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 006812          558 FQQRAIDAWES  568 (630)
Q Consensus       558 ~~~~al~~~~~  568 (630)
                      ..++.+.++..
T Consensus       349 ~~~~~l~~~~~  359 (365)
T 4eqf_A          349 ANLGDLDVLLR  359 (365)
T ss_dssp             HHTTCCGGGTT
T ss_pred             HHHhhHHHHHH
Confidence            88887766554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=4.5e-25  Score=212.44  Aligned_cols=296  Identities=11%  Similarity=0.093  Sum_probs=245.5

Q ss_pred             HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE  238 (630)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  238 (630)
                      .+..+|..++..|++++|+..|++++..         +|..       ..++..++.++...|++++|+..++++++.. 
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-   86 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEK---------DPFH-------ASCLPVHIGTLVELNKANELFYLSHKLVDLY-   86 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC-------TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCC-------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Confidence            5567899999999999999999999987         2222       2345568889999999999999999998643 


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 006812          239 LILEEDSRELGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS  317 (630)
Q Consensus       239 ~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  317 (630)
                             |....++..+|.++...| ++++|+.++++++.+.+        ....++..+|.++...|++++|+.+++++
T Consensus        87 -------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  151 (330)
T 3hym_B           87 -------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK--------TYGPAWIAYGHSFAVESEHDQAMAAYFTA  151 (330)
T ss_dssp             -------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT--------TCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                   333578999999999999 99999999999987533        23466889999999999999999999999


Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812          318 QKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG  397 (630)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  397 (630)
                      +..      .|....++..+|.++...|++++|+..+++++...+.+    ..++..+|.++...|++++|+.++++++.
T Consensus       152 ~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          152 AQL------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED----PFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHH------TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHh------ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            887      45556677889999999999999999999999876554    45899999999999999999999999999


Q ss_pred             HHHhhcCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHH
Q 006812          398 ILDKKETISP-EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE  476 (630)
Q Consensus       398 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  476 (630)
                      +......... +....++..+|.++...|++++|+.++++++.+.     +.  ...++..+|.++...|++++|+.+|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~--~~~~~~~la~~~~~~g~~~~A~~~~~  294 (330)
T 3hym_B          222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQ--NASTYSAIGYIHSLMGNFENAVDYFH  294 (330)
T ss_dssp             HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT--CSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----cc--chHHHHHHHHHHHHhccHHHHHHHHH
Confidence            8765433221 3445789999999999999999999999999872     22  34588999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHH-HHcCChh
Q 006812          477 SAAERLKESFGPKHFGVGYIYNNLGAAY-LELDRPQ  511 (630)
Q Consensus       477 ~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  511 (630)
                      ++++        ..|....++..+|.++ ...|+.+
T Consensus       295 ~al~--------~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          295 TALG--------LRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TTTT--------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHc--------cCCCchHHHHHHHHHHHHHhCchh
Confidence            9987        3466667889999988 4555543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.94  E-value=9.7e-24  Score=206.70  Aligned_cols=331  Identities=12%  Similarity=0.055  Sum_probs=255.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--HHHHhcCHHHHH---------HHHHHHHHHHhhhcCC
Q 006812          217 KTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAE--AFVAVLNFKEAL---------PFGLKALEIHKKGLGH  285 (630)
Q Consensus       217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~---------~~~~~al~~~~~~~~~  285 (630)
                      +...+++++|...++++.......  ..+..+. .++.+-.  .....+.+..+.         ..+++.-......   
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~---   95 (378)
T 3q15_A           22 MIRQFSVPDAEILKAEVEQDIQQM--EEDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL---   95 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHGGGB--CCCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHh--cccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---
Confidence            478999999999999876554332  2233332 3333222  122233443333         4443322111110   


Q ss_pred             CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812          286 NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  365 (630)
                      +.......++..|..+...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.++++++...+...
T Consensus        96 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  175 (378)
T 3q15_A           96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP  175 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST
T ss_pred             ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC
Confidence            11223345778899999999999999999999999888887788999999999999999999999999999999887643


Q ss_pred             ---hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          366 ---ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE  442 (630)
Q Consensus       366 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  442 (630)
                         ...+.++..+|.+|...|++++|+.++++++.+.....  +.+..+.++.++|.+|...|++++|+.++++++.+.+
T Consensus       176 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  253 (378)
T 3q15_A          176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR  253 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence               35688999999999999999999999999999987653  4457788999999999999999999999999999987


Q ss_pred             hCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC---hhHHHHHHHH
Q 006812          443 KLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDR---PQSAAQVFAF  519 (630)
Q Consensus       443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~  519 (630)
                      ....+.  ...++..+|.++...|++++|+.++++++++....   .++.....+..++.++...|+   +.+|+.++++
T Consensus       254 ~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          254 EKVPDL--LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHCGGG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             hhCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            763322  26788999999999999999999999999976543   345555567889999998888   5555555554


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          520 AKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       520 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      .         ...+....++..+|.+|...|++++|..+|++++++.+.+
T Consensus       329 ~---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~  369 (378)
T 3q15_A          329 K---------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI  369 (378)
T ss_dssp             T---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             C---------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            1         2456777889999999999999999999999999887663

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=2.3e-25  Score=217.72  Aligned_cols=288  Identities=14%  Similarity=0.064  Sum_probs=230.0

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      +..++.+|.++...|++++|+.+|++++..                .|....+++.+|.++...|++++|+..|++++++
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  128 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ----------------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL  128 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            445788999999999999999999999987                2333577889999999999999999999999965


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH--HHHHHHHHHHHHHhccccHHHHHHHH
Q 006812          237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV--EVAHDRRLLGVIYSGLEEHQKALEQN  314 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~  314 (630)
                      .        |....++..+|.+|...|++++|+.++++++++.+........  .....+..+|.++...|++++|+.++
T Consensus       129 ~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  200 (365)
T 4eqf_A          129 Q--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY  200 (365)
T ss_dssp             C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred             C--------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence            3        3336789999999999999999999999999976643211110  12345567799999999999999999


Q ss_pred             HHHHHHHHHcCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812          315 ELSQKVLKTWGLSSE--LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL  392 (630)
Q Consensus       315 ~~a~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  392 (630)
                      ++++.+      .|.  ...++..+|.++...|++++|+..++++++..+.+    ..++..+|.++...|++++|+.++
T Consensus       201 ~~al~~------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~  270 (365)
T 4eqf_A          201 LEAAHQ------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAY  270 (365)
T ss_dssp             HHHHHH------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHh------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999887      444  67889999999999999999999999999976554    458999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-----hhHHHHHHHHHHHHcCC
Q 006812          393 EIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-----EGSVSARIGWLLLLTGK  467 (630)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~  467 (630)
                      ++++.+.        |....++..+|.+|...|++++|+.+|++++.+.+...+..++     ...++..++.++...|+
T Consensus       271 ~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          271 TRALEIQ--------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             HHHHHHC--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred             HHHHhcC--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence            9999874        4556899999999999999999999999999998876543221     25688999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhc
Q 006812          468 VPQAIPYLESAAERLKESF  486 (630)
Q Consensus       468 ~~~A~~~~~~al~~~~~~~  486 (630)
                      .+.|.....+.++.+.+.+
T Consensus       343 ~~~a~~~~~~~l~~~~~~~  361 (365)
T 4eqf_A          343 PELFQAANLGDLDVLLRAF  361 (365)
T ss_dssp             HHHHHHHHTTCCGGGTTTT
T ss_pred             HHHHHHHHHhhHHHHHHhc
Confidence            9999988887666554443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.94  E-value=4.7e-23  Score=201.82  Aligned_cols=334  Identities=10%  Similarity=0.006  Sum_probs=252.5

Q ss_pred             HHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHH--HHHcCCHHHHH---------HHHHHHH
Q 006812          166 ANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANV--KTAMGRREEAL---------EHLQKCL  234 (630)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~---------~~~~~al  234 (630)
                      .+...+++++|...++++......+....          .+ ..++.+-..  ....+.+..+.         ..+++. 
T Consensus        21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~----------~~-~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i-   88 (378)
T 3q15_A           21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQ----------DL-LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI-   88 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHGGGBCCCH----------HH-HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH-
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHhcccH----------HH-HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH-
Confidence            34789999999999999877654442211          11 122222221  11222222222         333321 


Q ss_pred             HHHHHHhcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHH
Q 006812          235 EIKELILEE-DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ  313 (630)
Q Consensus       235 ~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  313 (630)
                         +....+ ++......+...|..+...|++++|+.+|++++.+....  .+.+..+.++.++|.+|...|++++|+.+
T Consensus        89 ---~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~  163 (378)
T 3q15_A           89 ---ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYH  163 (378)
T ss_dssp             ---HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ---hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence               111111 122234467789999999999999999999999987764  24567889999999999999999999999


Q ss_pred             HHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHH
Q 006812          314 NELSQKVLKTWGL-SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKR  390 (630)
Q Consensus       314 ~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~  390 (630)
                      +++++.+....+. .+..+.++.++|.+|...|++++|+.++++++...+..  ....+.++.++|.+|...|++++|+.
T Consensus       164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~  243 (378)
T 3q15_A          164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE  243 (378)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999988776 36788999999999999999999999999999987653  34567899999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh
Q 006812          391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ  470 (630)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  470 (630)
                      ++++++.+.....   .|....++..+|.++...|++++|+.++++++++......+  .....+..++.++...|+.  
T Consensus       244 ~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~l~~ly~~~~~~--  316 (378)
T 3q15_A          244 HFQKAAKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK--FYKELFLFLQAVYKETVDE--  316 (378)
T ss_dssp             HHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS--CHHHHHHHHHHHHSSSCCH--
T ss_pred             HHHHHHHHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhCCCcH--
Confidence            9999999887653   24558899999999999999999999999999987665332  2233567788888888883  


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       471 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                        ..+.+++...++.  ...+.....+..+|.+|...|++++|..+|++++++.++.
T Consensus       317 --~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~  369 (378)
T 3q15_A          317 --RKIHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI  369 (378)
T ss_dssp             --HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence              3344444444332  3456777888999999999999999999999999987654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.9e-23  Score=199.10  Aligned_cols=275  Identities=17%  Similarity=0.164  Sum_probs=225.3

Q ss_pred             CChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          152 PSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQ  231 (630)
Q Consensus       152 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (630)
                      .+|..+.++..+|.++...|++++|+.++++++.+.....+..        .+....++..+|.++...|++++|+.+++
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~   93 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--------HPDVATMLNILALVYRDQNKYKDAANLLN   93 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3568899999999999999999999999999999988776433        45667889999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHH
Q 006812          232 KCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKAL  311 (630)
Q Consensus       232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (630)
                      +++++.+...+.+++....++..+|.+|...|++++|+.++++++++.....+.+++....++..+|.++...|++++|+
T Consensus        94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  173 (311)
T 3nf1_A           94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE  173 (311)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999988877788889999999999999999999999999999999988777788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHc--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-----hH------HHHHHHHHHHH
Q 006812          312 EQNELSQKVLKTW--GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES-----ET------RALVFISMGKA  378 (630)
Q Consensus       312 ~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~------~~~~~~~la~~  378 (630)
                      .++++++.+....  +..+....++..+|.+|...|++++|+.++++++...+...     +.      ....+..++..
T Consensus       174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
T 3nf1_A          174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK  253 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence            9999999998776  44588889999999999999999999999999998654421     11      12233334444


Q ss_pred             HHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          379 LCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE  442 (630)
Q Consensus       379 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  442 (630)
                      +...+.+.+|...+..+..        .++....++..+|.+|...|++++|+.++++++++.+
T Consensus       254 ~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          254 QKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             ----CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            4555555556666665543        2367889999999999999999999999999998743

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.93  E-value=3.2e-23  Score=197.59  Aligned_cols=276  Identities=16%  Similarity=0.100  Sum_probs=226.8

Q ss_pred             hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                      .+.++|....++..+|.++...|++++|+.++++++++.....+.+.+....++..+|.+|...|++++|+.++++++.+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34677888999999999999999999999999999999988776778889999999999999999999999999999999


Q ss_pred             HHHc--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh----cchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          321 LKTW--GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK----ESETRALVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       321 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                      ....  +..+....++..+|.++...|++++|+.++++++.....    +.+....++..+|.++...|++++|+.++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8776  666888999999999999999999999999999987633    3466688999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC----CCCCc----hhHHHHHHHHHHHHcC
Q 006812          395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP----QAQHS----EGSVSARIGWLLLLTG  466 (630)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~----~~~~~~~la~~~~~~g  466 (630)
                      ++.+.....+.+.+....++..+|.++...|++++|+.++++++++.....    .....    ....+..++..+...+
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT  258 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence            999988876667788999999999999999999999999999998765421    11111    1223344555666778


Q ss_pred             ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                      .+.+|...++++..        .+|....++..+|.+|...|++++|+.+|++++++.
T Consensus       259 ~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          259 SFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             CSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            88888888888776        568888999999999999999999999999999875

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=1.8e-23  Score=200.85  Aligned_cols=284  Identities=12%  Similarity=0.108  Sum_probs=233.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812          248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS  327 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  327 (630)
                      ....+..+|..+...|++++|+.+++++++..+        ....++..+|.++...|++++|+.++++++..      .
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~   85 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP--------EREEAWRSLGLTQAENEKDGLAIIALNHARML------D   85 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C
Confidence            345678899999999999999999999998533        23567888999999999999999999999887      5


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH---------HHHH-HH-HHHhhccHHHHHHHHHHHH
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV---------FISM-GK-ALCNQEKFADAKRCLEIAC  396 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~---------~~~l-a~-~~~~~~~~~~A~~~~~~a~  396 (630)
                      |....++..+|.++...|++++|+..+++++...+.........         ...+ +. ++...|++++|+.++++++
T Consensus        86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  165 (327)
T 3cv0_A           86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL  165 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence            66788999999999999999999999999998766543321111         1112 44 5888999999999999998


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHH
Q 006812          397 GILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE  476 (630)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  476 (630)
                      ...        |....++..+|.++...|++++|+.++++++.+     .+.  ...++..+|.++...|++++|+.+++
T Consensus       166 ~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~  230 (327)
T 3cv0_A          166 EMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPD--DAQLWNKLGATLANGNRPQEALDAYN  230 (327)
T ss_dssp             HHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            764        345578999999999999999999999999986     222  24678999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhcCCH
Q 006812          477 SAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH----ADSIEACQNLSKAYSSMGSY  552 (630)
Q Consensus       477 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~  552 (630)
                      ++++.        .|....++..+|.++...|++++|+.+|++++.+.....+...    .....++..+|.++...|++
T Consensus       231 ~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (327)
T 3cv0_A          231 RALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP  302 (327)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence            99984        3455668899999999999999999999999997643211111    11568999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 006812          553 TLAIEFQQRAIDAWES  568 (630)
Q Consensus       553 ~~A~~~~~~al~~~~~  568 (630)
                      ++|...++++++.++.
T Consensus       303 ~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          303 DLVELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHHHHHhcch
Confidence            9999999999998876

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.92  E-value=2.9e-22  Score=196.16  Aligned_cols=313  Identities=14%  Similarity=0.025  Sum_probs=250.9

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812          111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL  190 (630)
Q Consensus       111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  190 (630)
                      .+.++...|..+...| ++++|+.++++++...+.     ......+.++..+|.++...|++++|+..+++++.+.+..
T Consensus        13 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   86 (373)
T 1hz4_A           13 HAEFNALRAQVAINDG-NPDEAERLAKLALEELPP-----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   86 (373)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCT-----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCC-----CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence            3566778888899998 999999999999986522     1123456688899999999999999999999999997664


Q ss_pred             hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH
Q 006812          191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP  270 (630)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  270 (630)
                      .+          ......++..+|.++...|++++|+.++++++++.+...+..++....++..+|.++...|++++|..
T Consensus        87 ~~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (373)
T 1hz4_A           87 DV----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  156 (373)
T ss_dssp             TC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             Cc----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            32          22445677899999999999999999999999998876444447778889999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh-HHHHHHHHHHHHHHcCCHHH
Q 006812          271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE-LLRAEIDAANMQIALGKFEE  349 (630)
Q Consensus       271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  349 (630)
                      ++++++.+.+..   .++....++..+|.++...|++++|..++++++.+....+.... ........+.++...|++++
T Consensus       157 ~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  233 (373)
T 1hz4_A          157 SARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA  233 (373)
T ss_dssp             HHHHHHHHTTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence            999999987753   22235577889999999999999999999999988655444311 11222345666889999999


Q ss_pred             HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 006812          350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFET  429 (630)
Q Consensus       350 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  429 (630)
                      |..++++++...+.........+..++.++...|++++|...+++++.......  .+.....++..+|.++...|++++
T Consensus       234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~  311 (373)
T 1hz4_A          234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSD  311 (373)
T ss_dssp             HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHH
Confidence            999999988654432222233578899999999999999999999998876643  234555688999999999999999


Q ss_pred             HHHHHHHHHHHHHhC
Q 006812          430 AISLLKRTLALLEKL  444 (630)
Q Consensus       430 A~~~~~~al~~~~~~  444 (630)
                      |...+++++.+....
T Consensus       312 A~~~l~~al~~~~~~  326 (373)
T 1hz4_A          312 AQRVLLDALKLANRT  326 (373)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999986653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=2.4e-23  Score=199.98  Aligned_cols=289  Identities=12%  Similarity=0.063  Sum_probs=232.2

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      ....++.+|..+...|++++|+..|++++..                .|....++..+|.++...|++++|+.+++++++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   83 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA----------------APEREEAWRSLGLTQAENEKDGLAIIALNHARM   83 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445678999999999999999999999987                223346778899999999999999999999986


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH------HHHHHHH-HH-HHhccccH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV------AHDRRLL-GV-IYSGLEEH  307 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------~~~~~~l-a~-~~~~~g~~  307 (630)
                      +.        |....++..+|.++...|++++|+..+++++...+...... ...      ......+ +. ++...|++
T Consensus        84 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (327)
T 3cv0_A           84 LD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG-SVNLQADVDIDDLNVQSEDFFFAAPNEY  154 (327)
T ss_dssp             HC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------CCTTSHHHH
T ss_pred             cC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH-HHHhHHHHHHHHHHHHHHhHHHHHcccH
Confidence            53        33367899999999999999999999999998654321000 000      0011122 44 58899999


Q ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH
Q 006812          308 QKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD  387 (630)
Q Consensus       308 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~  387 (630)
                      ++|+.++++++..      .|....++..+|.++...|++++|+..+++++...+.+    ..++..+|.++...|++++
T Consensus       155 ~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~  224 (327)
T 3cv0_A          155 RECRTLLHAALEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD----AQLWNKLGATLANGNRPQE  224 (327)
T ss_dssp             HHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHH
Confidence            9999999998886      56677899999999999999999999999999875544    4588999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-----hhHHHHHHHHHH
Q 006812          388 AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-----EGSVSARIGWLL  462 (630)
Q Consensus       388 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~  462 (630)
                      |+.++++++...        |....++..+|.++...|++++|+.++++++.+.+...+....     ...++..+|.++
T Consensus       225 A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (327)
T 3cv0_A          225 ALDAYNRALDIN--------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL  296 (327)
T ss_dssp             HHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence            999999998864        3445788999999999999999999999999986653222211     456889999999


Q ss_pred             HHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          463 LLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      ...|++++|..+++++++.....++
T Consensus       297 ~~~g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          297 NVMNRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHHHHhcchhhh
Confidence            9999999999999999998776644

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.91  E-value=1.4e-21  Score=191.27  Aligned_cols=311  Identities=15%  Similarity=0.063  Sum_probs=251.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812          247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL  326 (630)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  326 (630)
                      ..+.++..+|.++...|++++|+.++++++...+.   .+......++..+|.++...|++++|+.++++++.+....+.
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   88 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence            33577888899999999999999999999986532   122345667889999999999999999999999999988877


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES----ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK  402 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  402 (630)
                      ......++.++|.++...|++++|+.++++++...+...    +....++..+|.++...|++++|..++++++.+....
T Consensus        89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A           89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            677788899999999999999999999999998876532    4567788899999999999999999999999887643


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHH--HHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVS--ARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       403 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      .   ++....++..+|.++...|++++|..++++++.+......  +......  ...+.++...|++++|..++++++.
T Consensus       169 ~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  243 (373)
T 1hz4_A          169 Q---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY--HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK  243 (373)
T ss_dssp             C---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             C---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc--chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            2   2235578889999999999999999999999988655321  1111111  2455668899999999999998876


Q ss_pred             HHHHhcCCCC-ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812          481 RLKESFGPKH-FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQ  559 (630)
Q Consensus       481 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  559 (630)
                      ..     +.. ......+..+|.++...|++++|...+++++.......  ..+....++..+|.++...|++++|...+
T Consensus       244 ~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          244 PE-----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             CC-----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CC-----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            21     111 12233567899999999999999999999999876631  22345568899999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 006812          560 QRAIDAWESHGPS  572 (630)
Q Consensus       560 ~~al~~~~~~~~~  572 (630)
                      ++++.+....|..
T Consensus       317 ~~al~~~~~~g~~  329 (373)
T 1hz4_A          317 LDALKLANRTGFI  329 (373)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHhccccHH
Confidence            9999999886653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1e-21  Score=181.48  Aligned_cols=238  Identities=16%  Similarity=0.174  Sum_probs=207.9

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      ..+..+..+|.++...|++++|+.+|++++...                 ....++..+|.++...|++++|+.++++++
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~   65 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----------------KDITYLNNRAAAEYEKGEYETAISTLNDAV   65 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            467788999999999999999999999999982                 113578899999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN  314 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  314 (630)
                      ++.+... ++.+....++..+|.++...|++++|+.++++++.+.+.                +.++...|++++|+..+
T Consensus        66 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~a~~~~  128 (258)
T 3uq3_A           66 EQGREMR-ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------ADILTKLRNAEKELKKA  128 (258)
T ss_dssp             HHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHH
T ss_pred             HhCcccc-cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------hHHHHHHhHHHHHHHHH
Confidence            8876542 345556889999999999999999999999999986432                45677788999999999


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                      ++++..      .|....++..+|.++...|++++|+..+++++...+.+    ..++..+|.++...|++++|+.++++
T Consensus       129 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          129 EAEAYV------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHc------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            988775      68888999999999999999999999999999976554    45899999999999999999999999


Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812          395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  444 (630)
                      +++..        |....++..+|.++...|++++|..++++++++.+..
T Consensus       199 al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  240 (258)
T 3uq3_A          199 AIEKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV  240 (258)
T ss_dssp             HHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence            98864        3456789999999999999999999999999987654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.4e-21  Score=179.08  Aligned_cols=253  Identities=14%  Similarity=0.070  Sum_probs=213.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812          247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL  326 (630)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  326 (630)
                      ..+..+..+|.++...|++++|+.+|+++++.. .        ...++..+|.++...|++++|+.++++++.+....+.
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   73 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K--------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA   73 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c--------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence            346789999999999999999999999999864 1        1367889999999999999999999999998776654


Q ss_pred             C-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812          327 S-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       327 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  405 (630)
                      . +....++..+|.++...|++++|+..+++++...+.            +.++...|++++|+..+++++...      
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~------  135 (258)
T 3uq3_A           74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------ADILTKLRNAEKELKKAEAEAYVN------  135 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------------hHHHHHHhHHHHHHHHHHHHHHcC------
Confidence            4 445889999999999999999999999999986543            456778899999999999987753      


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                        |....++..+|.++...|++++|+.++++++.+.     +.  ...++..+|.++...|++++|+.++++++++    
T Consensus       136 --~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----  202 (258)
T 3uq3_A          136 --PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PE--DARGYSNRAAALAKLMSFPEAIADCNKAIEK----  202 (258)
T ss_dssp             --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             --cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Confidence              6778899999999999999999999999999862     22  2468899999999999999999999999984    


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006812          486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA  545 (630)
Q Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  545 (630)
                          .|....++..+|.++...|++++|+.+|++++++..+..  ..|....++..++.+
T Consensus       203 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          203 ----DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKA  256 (258)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred             ----CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence                355567899999999999999999999999999875442  234455566555543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.90  E-value=1.8e-21  Score=182.59  Aligned_cols=263  Identities=17%  Similarity=0.101  Sum_probs=217.8

Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc--CCChhHHHHHHH
Q 006812          259 FVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW--GLSSELLRAEID  336 (630)
Q Consensus       259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~  336 (630)
                      ....|++++|+.+|++++++..+..+.+++....++..+|.++...|++++|+.++++++.+....  ++.+....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            456789999999999999999998888889999999999999999999999999999999998777  666889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhh----cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Q 006812          337 AANMQIALGKFEEAINTLKGVVRQTEK----ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVAD  412 (630)
Q Consensus       337 la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  412 (630)
                      +|.+|...|++++|+.++++++.....    +.+....++..+|.++...|++++|+.++++++.+.....+.+++....
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            999999999999999999999987643    2466788999999999999999999999999999988887777889999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-CCCC-chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALLEKLP-QAQH-SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      ++..+|.++...|++++|+.++++++.+..... +... .....+..++..+...+....+.. +..+...... .+..+
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~  248 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKA-CKVDS  248 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------C-CCCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHh-cCCCC
Confidence            999999999999999999999999999865532 1112 224566777777777666665554 4444443333 44567


Q ss_pred             ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      +....++..+|.+|...|++++|+.+|++++++
T Consensus       249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888999999999999999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.90  E-value=4e-22  Score=198.85  Aligned_cols=379  Identities=14%  Similarity=0.074  Sum_probs=263.4

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccCh---HHHHHHHHHHHHHHhHhhh
Q 006812          116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRF---SDSLGYLSKANRMLGRLEE  192 (630)
Q Consensus       116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~~  192 (630)
                      ..+|..++..| ++++|+.+|+++.+.      ++      +.+++.+|.+|...|++   ++|+.+|+++++.      
T Consensus         7 ~~la~~~~~~g-~~~~A~~~~~~aa~~------g~------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------   67 (452)
T 3e4b_A            7 QRLANEALKRG-DTVTAQQNYQQLAEL------GY------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------   67 (452)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHH------TC------CTGGGTCC-------------------------------
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHC------CC------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------
Confidence            34667777777 999999999998653      12      23567899999999999   9999999999864      


Q ss_pred             cCCCCCCccchhhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812          193 EGLGGSVEDIKPIMHAVHLELANVKTAMG-----RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE  267 (630)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (630)
                                   ...+++.+|.++...|     ++++|+.+|+++++       ..+   ..++..||.+|...+...+
T Consensus        68 -------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~~~~~~~  124 (452)
T 3e4b_A           68 -------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA-------NGE---GNTLIPLAMLYLQYPHSFP  124 (452)
T ss_dssp             ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH-------TTC---SSCHHHHHHHHHHCGGGCT
T ss_pred             -------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH-------CCC---HHHHHHHHHHHHhCCCCCC
Confidence                         1245678999777766     88999999999885       122   2478899999999887766


Q ss_pred             HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC--
Q 006812          268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG--  345 (630)
Q Consensus       268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--  345 (630)
                      +...++......+.    .+   ..+.+.+|.+|...+.++++........+...  ..++.   ++..+|.+|...|  
T Consensus       125 ~~~a~~~~~~a~~~----g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~--~~~~~---a~~~Lg~~~~~~g~~  192 (452)
T 3e4b_A          125 NVNAQQQISQWQAA----GY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL--NTTDI---CYVELATVYQKKQQP  192 (452)
T ss_dssp             TCCHHHHHHHHHHH----TC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT--TTCTT---HHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHC----CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--cCCHH---HHHHHHHHHHHcCCc
Confidence            65554444443332    11   35677899999999977777665443332221  11232   8899999999999  


Q ss_pred             -CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812          346 -KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ----EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ  420 (630)
Q Consensus       346 -~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  420 (630)
                       ++++|+.+|+++.+..+..    +..++++|.+|...    +++++|+.+|+++.   .        ....+++++|.+
T Consensus       193 ~~~~~A~~~~~~aa~~g~~~----a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~--------g~~~a~~~Lg~~  257 (452)
T 3e4b_A          193 EQQAELLKQMEAGVSRGTVT----AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P--------GYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCSC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G--------GSTHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C--------CCHHHHHHHHHH
Confidence             9999999999998854333    44668999999766    79999999999986   1        334788999998


Q ss_pred             -H--HHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC-----ChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812          421 -Y--ESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG-----KVPQAIPYLESAAERLKESFGPKHFG  492 (630)
Q Consensus       421 -~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~  492 (630)
                       +  ...+++++|+.+|+++.+.     +    ...+++++|.+|. .|     ++++|+.+|+++.           +.
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g  316 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GR  316 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TT
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CC
Confidence             4  5789999999999999863     1    3458899999998 56     9999999999876           22


Q ss_pred             HHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 006812          493 VGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS----MGSYTLAIEFQQRAID  564 (630)
Q Consensus       493 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  564 (630)
                      ...++++||.+|..    ..++++|+.+|+++.+.       .+   ..++++||.+|..    ..++.+|..+|++|.+
T Consensus       317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            34588999999987    44999999999999762       22   3688999999985    5699999999999863


Q ss_pred             H--------HHH-cCCCchhHHHHHHHHHHHHHHHhcCC
Q 006812          565 A--------WES-HGPSAQDELREARRLLEQLKIKASGA  594 (630)
Q Consensus       565 ~--------~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~  594 (630)
                      .        ... ...-.+++..+|..+.++........
T Consensus       387 ~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~  425 (452)
T 3e4b_A          387 QDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTL  425 (452)
T ss_dssp             TCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccc
Confidence            2        222 22235678889999988877665443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.90  E-value=2.1e-21  Score=182.20  Aligned_cols=260  Identities=18%  Similarity=0.121  Sum_probs=215.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      ++++|+.+|++++++.....+.+  ++..+.++..+|.++...|++++|+.++++++.+.+...+..        .+...
T Consensus        16 ~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~   85 (283)
T 3edt_B           16 PRGSAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD--------HPAVA   85 (283)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHCSS--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--------CHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc--------chHHH
Confidence            99999999999999998874333  468899999999999999999999999999999987764443        45677


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      .++..+|.++...|++++|+.+|++++++.+...++++|....++..+|.+|...|++++|+.++++++++.....+.++
T Consensus        86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  165 (283)
T 3edt_B           86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD  165 (283)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            88999999999999999999999999999998888888999999999999999999999999999999999888877888


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC--C-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---Hh
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG--L-SSELLRAEIDAANMQIALGKFEEAINTLKGVVR---QT  361 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~  361 (630)
                      +....++..+|.++...|++++|+.++++++.+....+  . .+.....+..++..+...+....+.. +..+..   ..
T Consensus       166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  244 (283)
T 3edt_B          166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKAC  244 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhc
Confidence            99999999999999999999999999999999865532  1 24444555666666665554443333 222222   22


Q ss_pred             hhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812          362 EKESETRALVFISMGKALCNQEKFADAKRCLEIACGI  398 (630)
Q Consensus       362 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  398 (630)
                      ....+....++..+|.+|...|++++|..++++++++
T Consensus       245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2345777889999999999999999999999999864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.89  E-value=3.9e-22  Score=185.93  Aligned_cols=244  Identities=13%  Similarity=0.020  Sum_probs=206.1

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812          293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF  372 (630)
Q Consensus       293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  372 (630)
                      .+...|.++...|++++|+.+++++++.      .|....++..+|.++...|++++|+..+++++. .+.++.....++
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~   77 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADF   77 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHT------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHH
Confidence            4667899999999999999999998875      455666889999999999999999999999998 444444446789


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchh
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG  452 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  452 (630)
                      ..+|.++...|++++|+.++++++++.        |....++..+|.+|...|++++|+.++++++.+       .+...
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~~  142 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------TTTDP  142 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------SCCCH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------CCCcH
Confidence            999999999999999999999999875        344578999999999999999999999999875       22235


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhcC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDR---PQSAAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~  529 (630)
                      .++..+|......+++++|+.+|++++++        .|....++..+|.++...|+   +++|+..|++++++......
T Consensus       143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  214 (272)
T 3u4t_A          143 KVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA  214 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence            68899995555566999999999999984        35556788999999999999   99999999999998765432


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      +.......++..+|.+|...|++++|+.+|++++++.
T Consensus       215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            2223355899999999999999999999999999863

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=6.5e-22  Score=190.59  Aligned_cols=256  Identities=9%  Similarity=0.043  Sum_probs=217.6

Q ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Q 006812          244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE-HQKALEQNELSQKVLK  322 (630)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~  322 (630)
                      ..|....++..+|.++...|++++|+..|++++.+.+        ....+++++|.++..+|+ +++|+.+|++++.+  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--  161 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA--------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc--------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence            3466688899999999999999999999999998644        346789999999999997 99999999999998  


Q ss_pred             HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812          323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK  402 (630)
Q Consensus       323 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  402 (630)
                          +|....++.++|.++..+|++++|+..|++++...+.+    ..+|.++|.++...|++++|+.++++++++.   
T Consensus       162 ----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~----~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---  230 (382)
T 2h6f_A          162 ----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKED---  230 (382)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---
T ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence                88889999999999999999999999999999976665    4589999999999999999999999999875   


Q ss_pred             cCCCcHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC--ChhhHHHH
Q 006812          403 ETISPEEVADAYSEISMQYES-MNEFETA-----ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG--KVPQAIPY  474 (630)
Q Consensus       403 ~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~  474 (630)
                           |....+|+++|.++.. .|.+++|     +.+|++++.+     .+.  ...++.++|.++...|  ++++|++.
T Consensus       231 -----P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~--~~~a~~~l~~ll~~~g~~~~~~a~~~  298 (382)
T 2h6f_A          231 -----VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPH--NESAWNYLKGILQDRGLSKYPNLLNQ  298 (382)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STT--CHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCC--CHHHHHHHHHHHHccCccchHHHHHH
Confidence                 5667899999999999 5655777     5899999987     222  2468899999999988  68899887


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--------C-hhHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHH
Q 006812          475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLELD--------R-PQSAAQVFAFA-KDIMDVSLGPHHADSIEACQNLSK  544 (630)
Q Consensus       475 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~  544 (630)
                      ++++ +        ..|....++..+|.+|..+|        + +++|+.+|+++ ++        .+|.....|..++.
T Consensus       299 ~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~~w~~~~~  361 (382)
T 2h6f_A          299 LLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKEYWRYIGR  361 (382)
T ss_dssp             HHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHHHHHHHHH
T ss_pred             HHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHHHHHHHHH
Confidence            7665 3        35667778999999999985        2 58888888887 55        56777788888888


Q ss_pred             HHHhc
Q 006812          545 AYSSM  549 (630)
Q Consensus       545 ~~~~~  549 (630)
                      .+..+
T Consensus       362 ~l~~~  366 (382)
T 2h6f_A          362 SLQSK  366 (382)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.88  E-value=1.6e-21  Score=187.90  Aligned_cols=256  Identities=11%  Similarity=0.012  Sum_probs=213.6

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccC-hHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKR-FSDSLGYLSKANR  185 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~  185 (630)
                      -+|....++..+|.++...| ++++|+..|++++.+.          |....+++.+|.++..+|+ +++|+..|++++.
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g-~~~~Al~~~~~al~l~----------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~  160 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDE-RSERAFKLTRDAIELN----------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE  160 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhC----------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            45778889999999999998 9999999999999875          3346788999999999997 9999999999999


Q ss_pred             HHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCH
Q 006812          186 MLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNF  265 (630)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  265 (630)
                      +                .|....+|+.+|.++..+|++++|+..|++++++.        |....++.++|.++...|++
T Consensus       161 l----------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------P~~~~a~~~lg~~~~~~g~~  216 (382)
T 2h6f_A          161 E----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQEFKLW  216 (382)
T ss_dssp             H----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCC
T ss_pred             H----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHcCCh
Confidence            8                44456789999999999999999999999999654        34468899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812          266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-LEEHQKA-----LEQNELSQKVLKTWGLSSELLRAEIDAAN  339 (630)
Q Consensus       266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~la~  339 (630)
                      ++|+.+|++++++.+        ....+++++|.++.. .|.+++|     +.+|++++.+      .|....++.+++.
T Consensus       217 ~eAl~~~~~al~l~P--------~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l------~P~~~~a~~~l~~  282 (382)
T 2h6f_A          217 DNELQYVDQLLKEDV--------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL------VPHNESAWNYLKG  282 (382)
T ss_dssp             TTHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH------STTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHH
Confidence            999999999999744        345788999999999 5655787     5889999987      7888899999999


Q ss_pred             HHHHcC--CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhc--------c-HHHHHHHHHHH-HHHHHhhcCCCc
Q 006812          340 MQIALG--KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE--------K-FADAKRCLEIA-CGILDKKETISP  407 (630)
Q Consensus       340 ~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~--------~-~~~A~~~~~~a-~~~~~~~~~~~~  407 (630)
                      ++...|  ++++|++.++++ +    ..+....++..+|.+|..+|        + +++|+.+|+++ +++.        
T Consensus       283 ll~~~g~~~~~~a~~~~~~~-~----~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D--------  349 (382)
T 2h6f_A          283 ILQDRGLSKYPNLLNQLLDL-Q----PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD--------  349 (382)
T ss_dssp             HHTTTCGGGCHHHHHHHHHH-T----TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC--------
T ss_pred             HHHccCccchHHHHHHHHHh-c----cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC--------
Confidence            999988  689999988876 3    22233558889999999875        3 58888888886 5543        


Q ss_pred             HHHHHHHHHHHHHHHHc
Q 006812          408 EEVADAYSEISMQYESM  424 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~  424 (630)
                      |.....|..++..+..+
T Consensus       350 P~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          350 TIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             GGGHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHH
Confidence            56667787777766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=3.9e-20  Score=189.73  Aligned_cols=412  Identities=10%  Similarity=-0.008  Sum_probs=282.3

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML  187 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (630)
                      +|....+|..++.. ...| ++++|...|+++++..          |.....+..++..+...|++++|...|++++...
T Consensus         9 ~P~~~~~w~~l~~~-~~~~-~~~~a~~~~e~al~~~----------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~   76 (530)
T 2ooe_A            9 NPYDLDAWSILIRE-AQNQ-PIDKARKTYERLVAQF----------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV   76 (530)
T ss_dssp             CTTCHHHHHHHHHH-HHSS-CHHHHHHHHHHHHTTC----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred             CCCCHHHHHHHHHH-HHhC-CHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence            46777888888874 6677 9999999999999765          3346678889999999999999999999999871


Q ss_pred             hHhhhcCCCCCCccchhhHHHHHHHHH-HHHHHcCCHHHHHH----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-
Q 006812          188 GRLEEEGLGGSVEDIKPIMHAVHLELA-NVKTAMGRREEALE----HLQKCLEIKELILEEDSRELGVANRDLAEAFVA-  261 (630)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-  261 (630)
                                      |. ...+..++ ......|++++|.+    .|++++..    .+ .++.....+...+..... 
T Consensus        77 ----------------p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g-~~~~~~~~w~~~~~~~~~~  134 (530)
T 2ooe_A           77 ----------------LH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IG-MEIMSYQIWVDYINFLKGV  134 (530)
T ss_dssp             ----------------CC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TT-TSTTCHHHHHHHHHHHHHS
T ss_pred             ----------------CC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CC-CCcccHHHHHHHHHHHhcC
Confidence                            21 12444455 34456788887776    55555532    22 222234556666665554 


Q ss_pred             --------hcCHHHHHHHHHHHHHHHhhhcCCCCH-HHHHHHHHHH----------HHHhccccHHHHHHHHHHHHHHHH
Q 006812          262 --------VLNFKEALPFGLKALEIHKKGLGHNSV-EVAHDRRLLG----------VIYSGLEEHQKALEQNELSQKVLK  322 (630)
Q Consensus       262 --------~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la----------~~~~~~g~~~~A~~~~~~a~~~~~  322 (630)
                              .|++++|..+|++++.. +.    ... .....+..+.          .+....+++..|...+.....+..
T Consensus       135 ~~~~~~~~~~~~~~a~~~y~~al~~-P~----~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~  209 (530)
T 2ooe_A          135 EAVGSYAENQRITAVRRVYQRGCVN-PM----INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMK  209 (530)
T ss_dssp             CCCSSTTHHHHHHHHHHHHHHHTTS-CC----TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHhHHHHHHHHHHHHHhc-hh----hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                    78999999999999872 21    111 1111111111          111245677888877766554444


Q ss_pred             HcCC-----Chh-------HHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh-
Q 006812          323 TWGL-----SSE-------LLRAEIDAANMQIAL----GKF----EEAINTLKGVVRQTEKESETRALVFISMGKALCN-  381 (630)
Q Consensus       323 ~~~~-----~~~-------~~~~~~~la~~~~~~----g~~----~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-  381 (630)
                      .+..     .|.       ....+..........    ++.    ..++..|++++...+.+    ..+|..+|..+.. 
T Consensus       210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~----~~~w~~~~~~~~~~  285 (530)
T 2ooe_A          210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH----PDIWYEAAQYLEQS  285 (530)
T ss_dssp             HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred             HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHh
Confidence            4432     111       123333333222221    232    47888999999976654    4488999988876 


Q ss_pred             ------hccHH-------HHHHHHHHHHH-HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          382 ------QEKFA-------DAKRCLEIACG-ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       382 ------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                            .|+++       +|...+++++. +.        |....++..+|.++...|++++|...|++++++     .+
T Consensus       286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~--------p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p  352 (530)
T 2ooe_A          286 SKLLAEKGDMNNAKLFSDEAANIYERAISTLL--------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----ED  352 (530)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SS
T ss_pred             chhhhhccchhhhhhhhHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cc
Confidence                  78887       78888888875 32        455688999999999999999999999999984     22


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHHHH
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA-YLELDRPQSAAQVFAFAKDIMDV  526 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~  526 (630)
                      ..+ ..+|..++.++...|++++|+..|+++++.        .|.....+...+.+ +...|++++|..+|+++++..  
T Consensus       353 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--  421 (530)
T 2ooe_A          353 IDP-TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--  421 (530)
T ss_dssp             SCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--
T ss_pred             cCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--
Confidence            211 247899999999999999999999999872        22223344444444 446899999999999999864  


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------HHHcC--CCchhHHHHHHHHHHHHHHHhc
Q 006812          527 SLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA-----------WESHG--PSAQDELREARRLLEQLKIKAS  592 (630)
Q Consensus       527 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~~~~~--~~~~~~~~~A~~~~~~~~~~~~  592 (630)
                            |+...++..++.++...|+.++|..+|++++..           +....  ....|+.+.+..++.++.+...
T Consensus       422 ------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          422 ------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             ------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             ------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence                  344578899999999999999999999999864           21100  0133667777788877766654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.88  E-value=1.5e-21  Score=181.95  Aligned_cols=262  Identities=13%  Similarity=-0.007  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      ..+...|.++...|++++|+.+|+++++..+.        ...++..+|.++...|++++|+.++++++..   ......
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~   72 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--------SPYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKA   72 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhH
Confidence            45778899999999999999999999986442        2346788999999999999999999998772   122233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      ...++..+|.++...|++++|+..++++++..+...    .++..+|.++...|++++|+.++++++.+.        |.
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~  140 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--------TT  140 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--------CC
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHhhcC--------CC
Confidence            477899999999999999999999999999766553    489999999999999999999999988762        45


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCC---hhhHHHHHHHHHHHHHHhc
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGK---VPQAIPYLESAAERLKESF  486 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~  486 (630)
                      ...++..+|......+++++|+.++++++++.     +.  ....+..+|.++...|+   +++|+..|++++++.....
T Consensus       141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  213 (272)
T 3u4t_A          141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-----PN--IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG  213 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT--CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----cc--chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc
Confidence            56788999944445569999999999999872     22  24578899999999999   9999999999999875442


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812          487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM  549 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  549 (630)
                      .+.......++..+|.+|...|++++|+.+|++++++.        |+...+...++.+....
T Consensus       214 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          214 AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD--------PTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHC------
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------ccHHHHHHHhhhhhccc
Confidence            11122356789999999999999999999999999852        44445666666555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.88  E-value=1.4e-21  Score=174.46  Aligned_cols=198  Identities=15%  Similarity=0.159  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      ...++..+|.++...|++++|+..|+++++..+.+    ..++..+|.++...|++++|+..+++++++.        |.
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~   71 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVART--------PR   71 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Confidence            34567778888888888888888888888755444    4478888888888888888888888887764        45


Q ss_pred             HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHH
Q 006812          410 VADAYSEISMQYESM-----------NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESA  478 (630)
Q Consensus       410 ~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  478 (630)
                      ...++..+|.++...           |++++|+..|++++++     .+.  ...++..+|.++...|++++|+..|+++
T Consensus        72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a  144 (217)
T 2pl2_A           72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPR--YAPLHLQRGLVYALLGERDKAEASLKQA  144 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----Ccc--cHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            567788888888888           9999999999999997     222  3468899999999999999999999999


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 006812          479 AERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEF  558 (630)
Q Consensus       479 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  558 (630)
                      +++       +  ....++.++|.++...|++++|+..|++++++        +|+...++.++|.++...|++++|+..
T Consensus       145 l~~-------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~  207 (217)
T 2pl2_A          145 LAL-------E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAARA  207 (217)
T ss_dssp             HHH-------C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----------
T ss_pred             Hhc-------c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence            995       2  34568899999999999999999999999984        456668999999999999999999999


Q ss_pred             HHHHH
Q 006812          559 QQRAI  563 (630)
Q Consensus       559 ~~~al  563 (630)
                      |+++-
T Consensus       208 ~~~~~  212 (217)
T 2pl2_A          208 AALEH  212 (217)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            98764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.88  E-value=2.1e-21  Score=173.29  Aligned_cols=198  Identities=21%  Similarity=0.152  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL  370 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  370 (630)
                      ..++..+|.++...|++++|+..|+++++.      +|....++..+|.++...|++++|+..++++++..+.+    ..
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~   74 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY----LG   74 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HH
Confidence            356789999999999999999999998876      78889999999999999999999999999999976655    44


Q ss_pred             HHHHHHHHHHhh-----------ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          371 VFISMGKALCNQ-----------EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       371 ~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                      ++..+|.++...           |++++|+..+++++++.        |....++..+|.++...|++++|+..|+++++
T Consensus        75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  146 (217)
T 2pl2_A           75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------PRYAPLHLQRGLVYALLGERDKAEASLKQALA  146 (217)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            899999999999           99999999999999875        56668899999999999999999999999999


Q ss_pred             HHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812          440 LLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF  519 (630)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  519 (630)
                      +.        ....++.++|.++...|++++|+..|++++++        +|....++..+|.++...|++++|+..|++
T Consensus       147 ~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          147 LE--------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-------------
T ss_pred             cc--------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            72        23458899999999999999999999999984        466677899999999999999999999998


Q ss_pred             HHH
Q 006812          520 AKD  522 (630)
Q Consensus       520 al~  522 (630)
                      +-.
T Consensus       211 ~~~  213 (217)
T 2pl2_A          211 EHH  213 (217)
T ss_dssp             ---
T ss_pred             Hhh
Confidence            743

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.87  E-value=1.7e-20  Score=187.10  Aligned_cols=357  Identities=12%  Similarity=0.026  Sum_probs=245.8

Q ss_pred             HHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhcc-----ChHHHHHHHHHH
Q 006812          112 GLVGLKIALKLDQEGGDP---EMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFK-----RFSDSLGYLSKA  183 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~a  183 (630)
                      ..+++.+|.++...| ++   ++|+.+|+++++.             .+.+++.+|.++...+     ++++|+.+|+++
T Consensus        35 ~~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~-------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~A  100 (452)
T 3e4b_A           35 SEAQVGLADIQVGTR-DPAQIKQAEATYRAAADT-------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKA  100 (452)
T ss_dssp             CTGGGTCC------------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH
Confidence            456778888888877 77   9999999999854             1235678999666665     789999999999


Q ss_pred             HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Q 006812          184 NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL  263 (630)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (630)
                      +..     +..             .+++.||.+|...+...++...++......+.       ....+...+|.+|...+
T Consensus       101 a~~-----g~~-------------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-------g~~~a~~~Lg~~y~~~~  155 (452)
T 3e4b_A          101 FAN-----GEG-------------NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-------GYPEAGLAQVLLYRTQG  155 (452)
T ss_dssp             HHT-----TCS-------------SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-------TCTTHHHHHHHHHHHHT
T ss_pred             HHC-----CCH-------------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCC
Confidence            873     111             25678999999988776665444443322221       12467889999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006812          264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE---EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANM  340 (630)
Q Consensus       264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~  340 (630)
                      .++++.............    .++.   ++++||.+|...|   ++++|+.+|+++.+.      .+.....+.++|.+
T Consensus       156 ~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~------g~~~a~~~~~Lg~~  222 (452)
T 3e4b_A          156 TYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR------GTVTAQRVDSVARV  222 (452)
T ss_dssp             CGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT------TCSCHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC------CCHHHHHHHHHHHH
Confidence            888888775554443332    2222   7889999999999   999999999998875      45556667899999


Q ss_pred             HHHc----CCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH-H--HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812          341 QIAL----GKFEEAINTLKGVVRQTEKESETRALVFISMGKA-L--CNQEKFADAKRCLEIACGILDKKETISPEEVADA  413 (630)
Q Consensus       341 ~~~~----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  413 (630)
                      |...    +++++|+.+|+++.   +.+    +.+++++|.+ +  ...+++++|+.+|+++.+.          ....+
T Consensus       223 y~~g~~~~~d~~~A~~~~~~aa---~g~----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A  285 (452)
T 3e4b_A          223 LGDATLGTPDEKTAQALLEKIA---PGY----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRA  285 (452)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHG---GGS----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHH
T ss_pred             HhCCCCCCCCHHHHHHHHHHHc---CCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHH
Confidence            9765    79999999999987   333    3388999998 4  5689999999999998743          24478


Q ss_pred             HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHH
Q 006812          414 YSEISMQYESMN-----EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKE  484 (630)
Q Consensus       414 ~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  484 (630)
                      ++++|.+|. .|     ++++|+.+|+++. .     +    ...+++++|.+|..    ..++++|+.+|+++.+    
T Consensus       286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-----g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----  350 (452)
T 3e4b_A          286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-----R----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR----  350 (452)
T ss_dssp             HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-----T----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-----C----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh----
Confidence            899999998 56     9999999999886 1     1    34588999999887    4499999999999987    


Q ss_pred             hcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc--CCHHHHHHH
Q 006812          485 SFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM--GSYTLAIEF  558 (630)
Q Consensus       485 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~  558 (630)
                         ..+   ..+.++||.+|..    ..++.+|..+|+++.+.       .++   .+...++.+...+  ++..+|...
T Consensus       351 ---~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-------g~~---~a~~~l~~l~~~~~~~~~~~a~~~  414 (452)
T 3e4b_A          351 ---NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-------DTP---EANDLATQLEAPLTPAQRAEGQRL  414 (452)
T ss_dssp             ---TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT-------CCH---HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ---hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence               223   3478899999985    46899999999999872       233   3455566665433  356667777


Q ss_pred             HHHHHHHHHH
Q 006812          559 QQRAIDAWES  568 (630)
Q Consensus       559 ~~~al~~~~~  568 (630)
                      .++..+....
T Consensus       415 ~~~~~~~~~~  424 (452)
T 3e4b_A          415 VQQELAARGT  424 (452)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhccc
Confidence            7766655443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=4e-20  Score=172.58  Aligned_cols=280  Identities=14%  Similarity=0.080  Sum_probs=213.5

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 006812          257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV-AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEI  335 (630)
Q Consensus       257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  335 (630)
                      ...+..|+|..|+..+++...        .+|.. ......++.+|..+|+++.|+..++.         ..+....++.
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~~~~a~~   69 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAPELQAVR   69 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCChhHHHHH
Confidence            345678999999998876432        23333 34566789999999999999976543         1455678888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      .++..+...+++++|+..+++++...  ..|....++..+|.++...|++++|+..+++             +....++.
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~~~~~  134 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSLECMA  134 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCHHHHH
Confidence            99999999999999999999988742  0122245889999999999999999999886             13346888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHH
Q 006812          416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY  495 (630)
Q Consensus       416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  495 (630)
                      .+|.++..+|++++|+..+++++..     .++.........+..++...|++++|+.+|+++++.        .|....
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p~~~~  201 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CSPTLL  201 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SCCCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CCCcHH
Confidence            9999999999999999999999986     222211111122223444568999999999999983        466677


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHcCCCch
Q 006812          496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL-AIEFQQRAIDAWESHGPSAQ  574 (630)
Q Consensus       496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~  574 (630)
                      +++++|.++..+|++++|+..|++++.+        +|+...++.++|.++...|+..+ +..++++++++.+..+  ..
T Consensus       202 ~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~--~~  271 (291)
T 3mkr_A          202 LLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP--FI  271 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh--HH
Confidence            9999999999999999999999999984        45666889999999999999976 5688888886643211  22


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 006812          575 DELREARRLLEQLKIKA  591 (630)
Q Consensus       575 ~~~~~A~~~~~~~~~~~  591 (630)
                      .++.+....|+++..+.
T Consensus       272 ~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          272 KEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            34566667777766553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.86  E-value=2.3e-19  Score=167.45  Aligned_cols=280  Identities=11%  Similarity=0.026  Sum_probs=211.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812          215 NVKTAMGRREEALEHLQKCLEIKELILEEDSREL-GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD  293 (630)
Q Consensus       215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  293 (630)
                      ...+..|+|..|+..+++..        ..+|.. ......++.+|...|++++|+..++.          .+++ ...+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~--------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~~~-~~~a   67 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVK--------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP-ELQA   67 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSC--------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TSCH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc--------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cCCh-hHHH
Confidence            34567899999999887643        333433 45677789999999999999975543          1333 5677


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812          294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI  373 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~  373 (630)
                      +..++..+...|++++|++.+++.+..    +..|+...++..+|.++...|++++|+..+++     +    ....++.
T Consensus        68 ~~~la~~~~~~~~~~~A~~~l~~ll~~----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~----~~~~~~~  134 (291)
T 3mkr_A           68 VRMFAEYLASHSRRDAIVAELDREMSR----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G----DSLECMA  134 (291)
T ss_dssp             HHHHHHHHHCSTTHHHHHHHHHHHHHS----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C----CSHHHHH
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhc----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C----CCHHHHH
Confidence            888999999999999999998876542    22477788899999999999999999999987     2    2244889


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS  453 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  453 (630)
                      .+|.++..+|++++|+..+++++....     +.. .......+..++...|++++|+..|+++++.     .+  ....
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p--~~~~  201 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQDE-----DAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CS--PTLL  201 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SC--CCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCc-----CcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CC--CcHH
Confidence            999999999999999999999987731     111 1111111223344569999999999999986     22  2356


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHHhcCCCC
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS-AAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~  532 (630)
                      +++++|.++...|++++|+..|++++++        +|..+.++.++|.++...|++.+ +..++++++++     .|++
T Consensus       202 ~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-----~P~~  268 (291)
T 3mkr_A          202 LLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-----HRSH  268 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----CCCC
Confidence            8899999999999999999999999983        46667789999999999999986 56889999885     3456


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812          533 ADSIEACQNLSKAYSSMGSYTLAIEFQ  559 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~~~~A~~~~  559 (630)
                      |...+       +..+.+.++++..-|
T Consensus       269 ~~~~d-------~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          269 PFIKE-------YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHH-------HHHHHHHHHHHHHHH
T ss_pred             hHHHH-------HHHHHHHHHHHHHHc
Confidence            64432       344445555554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.86  E-value=3e-19  Score=166.26  Aligned_cols=223  Identities=14%  Similarity=0.115  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcc
Q 006812          290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~  365 (630)
                      ...++..+|.++...|++++|+.+|+++++        +....++..+|.+|..    .+++++|+.+|+++++..    
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----   72 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----   72 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----
Confidence            356788999999999999999999999887        2345788999999999    999999999999999863    


Q ss_pred             hHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 006812          366 ETRALVFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRT  437 (630)
Q Consensus       366 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  437 (630)
                        ...++..+|.+|..    .+++++|+.+++++++..          ...++..+|.+|..    .+++++|+.+|+++
T Consensus        73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a  140 (273)
T 1ouv_A           73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA  140 (273)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence              24589999999999    999999999999998741          34788999999999    99999999999999


Q ss_pred             HHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCC
Q 006812          438 LALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDR  509 (630)
Q Consensus       438 l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  509 (630)
                      ++.     +    ...++..+|.+|..    .+++++|+.+|+++++.       .   ...++..+|.+|..    .++
T Consensus       141 ~~~-----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~~~~~  201 (273)
T 1ouv_A          141 CDL-----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K---DSPGCFNAGNMYHHGEGATKN  201 (273)
T ss_dssp             HHT-----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTCSSCCC
T ss_pred             Hhc-----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCcc
Confidence            984     1    23578999999999    99999999999999972       2   24688999999999    999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 006812          510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS----MGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  565 (630)
                      +++|+.+|+++++.       . +  ..++.++|.+|..    .+++++|+.+|+++++.
T Consensus       202 ~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          202 FKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            99999999999983       1 2  4689999999999    99999999999999875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=2.7e-19  Score=167.70  Aligned_cols=236  Identities=14%  Similarity=0.060  Sum_probs=182.1

Q ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHH
Q 006812          298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISM  375 (630)
Q Consensus       298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~l  375 (630)
                      |.+|...|++++|+.+|.+++.+....++.+....++.++|.+|...|++++|+.+|++++.+.+...  ...+.++.++
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56778899999999999999999988887778899999999999999999999999999999887643  3447789999


Q ss_pred             HHHHHhh-ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812          376 GKALCNQ-EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV  454 (630)
Q Consensus       376 a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  454 (630)
                      |.+|... |++++|+.+|++++.+.....  .+.....++.++|.++..+|++++|+.+|++++.+..............
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  201 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            9999996 999999999999999986543  2234567899999999999999999999999998743321111112336


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH--HcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL--ELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      +.++|.++..+|++++|+.+|++++++.....   .......+..++..+.  ..+++++|+..|++++.        .+
T Consensus       202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--------l~  270 (292)
T 1qqe_A          202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--------LD  270 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--------CC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--------cH
Confidence            78999999999999999999999998543321   1122334556677665  45678888888877655        45


Q ss_pred             HHHHHHHHHHHHHH
Q 006812          533 ADSIEACQNLSKAY  546 (630)
Q Consensus       533 ~~~~~~~~~la~~~  546 (630)
                      |....++..+-...
T Consensus       271 ~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          271 KWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            66655555554444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=2.9e-19  Score=167.48  Aligned_cols=222  Identities=13%  Similarity=0.048  Sum_probs=178.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH
Q 006812          211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV  290 (630)
Q Consensus       211 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  290 (630)
                      ...|.+|...|++++|+.+|++++++.+..  .+.+..+.++.++|.+|...|++++|+.+|++++++.+...  +....
T Consensus        41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~  116 (292)
T 1qqe_A           41 VQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRG  116 (292)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHHH
Confidence            344667788999999999999999998776  55667789999999999999999999999999999988642  33456


Q ss_pred             HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch---
Q 006812          291 AHDRRLLGVIYSGL-EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE---  366 (630)
Q Consensus       291 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---  366 (630)
                      +.++.++|.+|... |++++|+.+|++++++....+.......++.++|.++..+|++++|+.+|++++...+....   
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence            78899999999996 99999999999999998876665566788999999999999999999999999998766542   


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE--SMNEFETAISLLKRTLA  439 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~  439 (630)
                      ....++.++|.++...|++++|+.++++++.+......   ......+..++..+.  ..+++++|+..|++++.
T Consensus       197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            34557899999999999999999999999887643221   112334556666664  45678888777766543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=9.8e-19  Score=162.78  Aligned_cols=223  Identities=16%  Similarity=0.124  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHH
Q 006812          248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG----LEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~  323 (630)
                      .+.++..+|.++...|++++|+.+|+++++  +     ++   ..++..+|.+|..    .+++++|+.+|+++++.   
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~-----~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---   71 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--L-----KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---   71 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T-----TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--C-----CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence            357889999999999999999999999987  1     22   3578899999999    99999999999998875   


Q ss_pred             cCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh----hccHHHHHHHHHHH
Q 006812          324 WGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN----QEKFADAKRCLEIA  395 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a  395 (630)
                           ....++..+|.+|..    .+++++|+.+|+++++..      ...++..+|.+|..    .+++++|+.+++++
T Consensus        72 -----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a  140 (273)
T 1ouv_A           72 -----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA  140 (273)
T ss_dssp             -----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence                 256788999999999    999999999999999852      24589999999999    99999999999999


Q ss_pred             HHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCC
Q 006812          396 CGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGK  467 (630)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~  467 (630)
                      ++..          ...++..+|.+|..    .+++++|+.+|+++++.     +    ...++..+|.+|..    .++
T Consensus       141 ~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~----~~~a~~~lg~~~~~g~~~~~~  201 (273)
T 1ouv_A          141 CDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K----DSPGCFNAGNMYHHGEGATKN  201 (273)
T ss_dssp             HHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHHHTCSSCCC
T ss_pred             HhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCCcc
Confidence            8742          23678899999999    99999999999999874     1    23578999999999    999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 006812          468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  523 (630)
                      +++|+.+|+++++.       . +  ..++..+|.+|..    .+++++|+.+|++++++
T Consensus       202 ~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          202 FKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            99999999999982       1 2  5688999999999    99999999999999985

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.84  E-value=6.9e-19  Score=166.31  Aligned_cols=246  Identities=9%  Similarity=-0.016  Sum_probs=194.7

Q ss_pred             ChHHHHHHHHHHHHHHHHh-hhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhH
Q 006812          128 DPEMTLSFANRALNVLDKD-ERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIM  206 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  206 (630)
                      ++++|.++++++.+..+.. ++...........+...|.+|...|++++|+..|.+++.+.....+          ....
T Consensus         6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~   75 (307)
T 2ifu_A            6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS----------LFHA   75 (307)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHH
T ss_pred             hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------HHHH
Confidence            8889999999988876532 1101112344556777889999999999999999999999776533          2355


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN  286 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  286 (630)
                      +.++..+|.+|..+|++++|+.+|++++++....  .+....+.++.++|.+|.. |++++|+.+|++++++.+...  +
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~  150 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--R  150 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--C
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--C
Confidence            6788999999999999999999999999998764  4455668899999999999 999999999999999988631  2


Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                      ......++.++|.+|..+|++++|+.+|++++.+....+..+.....+..+|.++...|++++|+..|++++ ..+....
T Consensus       151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            335678899999999999999999999999999988877656667788999999999999999999999999 6654432


Q ss_pred             -HHHHHHHHHHHHHHhhccHHHHHH
Q 006812          367 -TRALVFISMGKALCNQEKFADAKR  390 (630)
Q Consensus       367 -~~~~~~~~la~~~~~~~~~~~A~~  390 (630)
                       .....+..++..+ ..|+.+....
T Consensus       230 ~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          230 SEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             SHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHH-HhcCHHHHHH
Confidence             2234455566555 4566544443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.83  E-value=2.6e-18  Score=162.31  Aligned_cols=249  Identities=13%  Similarity=0.042  Sum_probs=197.8

Q ss_pred             hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH
Q 006812          169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSREL  248 (630)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  248 (630)
                      ..|++++|..+++++.+......    -...++ .......+...|.+|...|++++|+.+|.+++++....  .+....
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~----~~~~~~-~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~   75 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSF----MKWKPD-YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHA   75 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCS----SSCSCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccc----cCCCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHH
Confidence            46788899999998887654210    000112 33445667778899999999999999999999998876  556677


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS  328 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  328 (630)
                      +.++.++|.+|...|++++|+.+|++++++.....  +....+.++.++|.+|.. |++++|+.+|++++.+....+...
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            89999999999999999999999999999987642  334567889999999999 999999999999999988877667


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      ....++.++|.+|..+|++++|+.+|++++...+...  .....++..+|.++...|++++|+.++++++ +.....   
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~---  228 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS---  228 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST---
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC---
Confidence            7788999999999999999999999999999877653  3345688899999999999999999999998 542211   


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHH
Q 006812          407 PEEVADAYSEISMQYESMNEFETAIS  432 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~  432 (630)
                      .......+..++..+ ..|+.+....
T Consensus       229 ~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          229 GSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            123344566666655 4667655444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.83  E-value=1.9e-19  Score=167.97  Aligned_cols=258  Identities=15%  Similarity=0.011  Sum_probs=200.5

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 006812          256 AEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEI  335 (630)
Q Consensus       256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  335 (630)
                      +......|++++|+..|+++++..+    ...+....++..+|.++...|++++|+.+|++++.+      .|....++.
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~   81 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFN   81 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhccc----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCcHHHHH
Confidence            3344556899999999999987522    234577889999999999999999999999999987      666788999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      .+|.++...|++++|+.++++++...+.+    ..++..+|.++...|++++|+.++++++.+...        ......
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~  149 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--------DPFRSL  149 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------ChHHHH
Confidence            99999999999999999999999976655    348999999999999999999999999886422        112222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHH
Q 006812          416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY  495 (630)
Q Consensus       416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  495 (630)
                      .++ ++...|++++|+..+++++....     ...   ....++.++...++.++|+..+++++......    .+....
T Consensus       150 ~~~-~~~~~~~~~~A~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~  216 (275)
T 1xnf_A          150 WLY-LAEQKLDEKQAKEVLKQHFEKSD-----KEQ---WGWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSE  216 (275)
T ss_dssp             HHH-HHHHHHCHHHHHHHHHHHHHHSC-----CCS---THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHH
T ss_pred             HHH-HHHHhcCHHHHHHHHHHHHhcCC-----cch---HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----cccccH
Confidence            233 34667999999999999887521     111   23457888888999999999999888743321    234467


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812          496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQ  559 (630)
Q Consensus       496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  559 (630)
                      ++..+|.++...|++++|+.+|++++.+        +|..   +...+.++...|++++|++.+
T Consensus       217 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~---~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          217 TNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHN---FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTT---CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC--------Cchh---HHHHHHHHHHHHHHHhhHHHH
Confidence            8999999999999999999999999884        2322   223477788889999988876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=5.9e-17  Score=166.05  Aligned_cols=392  Identities=10%  Similarity=-0.015  Sum_probs=269.2

Q ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhh-HHHhhccChHHHHH----HHHH
Q 006812          108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMG-SANYSFKRFSDSLG----YLSK  182 (630)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~----~~~~  182 (630)
                      .|.....|...+......| ++++|...|++++...+        +   ...+..++ ......|++++|.+    .|++
T Consensus        42 ~P~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p--------~---~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~  109 (530)
T 2ooe_A           42 FPSSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVL--------H---IDLWKCYLSYVRETKGKLPSYKEKMAQAYDF  109 (530)
T ss_dssp             CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCC--------C---HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC--------C---hHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence            3777889999999999998 99999999999987542        1   22344444 34456788888876    5666


Q ss_pred             HHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 006812          183 ANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTA---------MGRREEALEHLQKCLEIKELILEEDSRELGVANR  253 (630)
Q Consensus       183 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  253 (630)
                      ++...    +..     +    ....+|...+.....         .|++++|..+|+++++.      +... ....+.
T Consensus       110 al~~~----g~~-----~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~------P~~~-~~~~~~  169 (530)
T 2ooe_A          110 ALDKI----GME-----I----MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN------PMIN-IEQLWR  169 (530)
T ss_dssp             HHHHT----TTS-----T----TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS------CCTT-HHHHHH
T ss_pred             HHHHC----CCC-----c----ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc------hhhh-HHHHHH
Confidence            65531    111     1    112444555555544         78999999999999852      1111 111121


Q ss_pred             HHHH-------------HHHHhcCHHHHHHHHHHHHHHHhhhc------CCCC----HHHHHHHHHHHHHHhc----ccc
Q 006812          254 DLAE-------------AFVAVLNFKEALPFGLKALEIHKKGL------GHNS----VEVAHDRRLLGVIYSG----LEE  306 (630)
Q Consensus       254 ~la~-------------~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~----~~~~~~~~~la~~~~~----~g~  306 (630)
                      ....             +....+++..|...+.+...+.....      .+..    ......+.........    .++
T Consensus       170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~  249 (530)
T 2ooe_A          170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED  249 (530)
T ss_dssp             HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred             HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence            1111             11234667778777766433322211      1110    0112233322222111    123


Q ss_pred             H----HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HhhhcchH
Q 006812          307 H----QKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA-------LGKFE-------EAINTLKGVVR-QTEKESET  367 (630)
Q Consensus       307 ~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~l~-~~~~~~~~  367 (630)
                      .    ..++..|++++..      .|....++..+|.++..       .|+++       +|+..|++++. ..+..   
T Consensus       250 ~~~~~~~a~~~y~~al~~------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---  320 (530)
T 2ooe_A          250 QTLITKRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---  320 (530)
T ss_dssp             SHHHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---
T ss_pred             chhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---
Confidence            2    4778899998886      46678889999999886       79987       89999999997 44433   


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                       ..++..++.++...|++++|...|++++++..     .  ....+|..++.++...|++++|...|+++++.     .+
T Consensus       321 -~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-----~~  387 (530)
T 2ooe_A          321 -MLLYFAYADYEESRMKYEKVHSIYNRLLAIED-----I--DPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----AR  387 (530)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-----S--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----TT
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-----c--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----cC
Confidence             45899999999999999999999999987521     1  12358899999999999999999999999873     11


Q ss_pred             CCchhHHHHHHHHH-HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812          448 QHSEGSVSARIGWL-LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDV  526 (630)
Q Consensus       448 ~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  526 (630)
                      .  ....+...+.+ +...|++++|..+|+++++..        |....++..++.++...|++++|..+|++++...  
T Consensus       388 ~--~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~--  455 (530)
T 2ooe_A          388 T--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--  455 (530)
T ss_dssp             C--CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC--
T ss_pred             C--chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc--
Confidence            1  23344444444 446899999999999999853        4556688999999999999999999999998742  


Q ss_pred             hcCCCCHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          527 SLGPHHAD-SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       527 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                         +.+|+ ...++...+......|+.+.+..+++++++.++.
T Consensus       456 ---~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          456 ---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             ---CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence               23343 3356777788888999999999999999998875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=1.1e-16  Score=169.20  Aligned_cols=325  Identities=14%  Similarity=0.065  Sum_probs=228.5

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCC
Q 006812          118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGG  197 (630)
Q Consensus       118 ~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  197 (630)
                      +|.++...| .+++|..+|+++-...            .     .+...+...+++++|.++++++.             
T Consensus      1055 IA~Iai~lg-lyEEAf~IYkKa~~~~------------~-----A~~VLie~i~nldrAiE~Aervn------------- 1103 (1630)
T 1xi4_A         1055 IANIAISNE-LFEEAFAIFRKFDVNT------------S-----AVQVLIEHIGNLDRAYEFAERCN------------- 1103 (1630)
T ss_pred             HHHHHHhCC-CHHHHHHHHHHcCCHH------------H-----HHHHHHHHHhhHHHHHHHHHhcC-------------
Confidence            466666666 7777777777742111            1     11222335566666666665431             


Q ss_pred             CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006812          198 SVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALE  277 (630)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  277 (630)
                              ...+|+.+|.++...|++++|++.|.++          ++   ...+..+|.++...|+|++|+++|..+.+
T Consensus      1104 --------~p~vWsqLAKAql~~G~~kEAIdsYiKA----------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A         1104 --------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----------DD---PSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred             --------CHHHHHHHHHHHHhCCCHHHHHHHHHhc----------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                    1367788999999999999999999774          11   45677889999999999999999988887


Q ss_pred             HHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          278 IHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGV  357 (630)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  357 (630)
                      ..+..         .+-..+|.+|.+.+++++ ++.|..          .+.. ..+..+|..+...|+|++|..+|.++
T Consensus      1163 ~~~e~---------~Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1163 KARES---------YVETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             hcccc---------cccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence            54321         111237888888888874 333311          2222 45567999999999999999999884


Q ss_pred             HHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          358 VRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRT  437 (630)
Q Consensus       358 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  437 (630)
                                  ..|..++.++.+.|++++|++.+++|..             ..+|...+.++...|++..|..+... 
T Consensus      1222 ------------~ny~rLA~tLvkLge~q~AIEaarKA~n-------------~~aWkev~~acve~~Ef~LA~~cgl~- 1275 (1630)
T 1xi4_A         1222 ------------SNFGRLASTLVHLGEYQAAVDGARKANS-------------TRTWKEVCFACVDGKEFRLAQMCGLH- 1275 (1630)
T ss_pred             ------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-------------HHHHHHHHHHHhhhhHHHHHHHHHHh-
Confidence                        3788899999999999999999988722             26788888889999999999887664 


Q ss_pred             HHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChhHHHH
Q 006812          438 LALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE--LDRPQSAAQ  515 (630)
Q Consensus       438 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~  515 (630)
                      +..          ....+..++..|...|.|++|+.++++++.+        .+.....+..+|.+|.+  -++..++++
T Consensus      1276 Iiv----------~~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A         1276 IVV----------HADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred             hhc----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence            221          1235668899999999999999999999873        24455567677777765  356677777


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812          516 VFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       516 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  562 (630)
                      +|...+.+-+-+   ..-+.+..|..+..+|.+-|+++.|...+-+.
T Consensus      1338 ~f~~rini~k~~---r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A         1338 LFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred             HHHHhcccchHh---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence            777665532111   11244567889999999999999999554444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=1.4e-19  Score=168.83  Aligned_cols=253  Identities=15%  Similarity=-0.002  Sum_probs=195.5

Q ss_pred             HhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccch
Q 006812          124 QEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIK  203 (630)
Q Consensus       124 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  203 (630)
                      ..+ ++++|+..|+++++..+      ...+..+.++..+|.++...|++++|+..|++++.+                .
T Consensus        17 ~~~-~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~   73 (275)
T 1xnf_A           17 PTL-QQEVILARMEQILASRA------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----------------R   73 (275)
T ss_dssp             CCH-HHHHHHHHHHHHHTSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------C
T ss_pred             ccc-hHHHHHHHHHHHHhccc------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----------------C
Confidence            344 89999999999887521      113567889999999999999999999999999998                2


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812          204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL  283 (630)
Q Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  283 (630)
                      |....++..+|.++...|++++|+.+|++++++.        |....++..+|.+|...|++++|+.++++++++.+   
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---  142 (275)
T 1xnf_A           74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP---  142 (275)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---
Confidence            2334678899999999999999999999999753        22357899999999999999999999999998654   


Q ss_pred             CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                        +++.   ....+ .+....|++++|+..+.+++...   ...   . ....++.++...++.++|+..+++++...+.
T Consensus       143 --~~~~---~~~~~-~~~~~~~~~~~A~~~~~~~~~~~---~~~---~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  209 (275)
T 1xnf_A          143 --NDPF---RSLWL-YLAEQKLDEKQAKEVLKQHFEKS---DKE---Q-WGWNIVEFYLGNISEQTLMERLKADATDNTS  209 (275)
T ss_dssp             --TCHH---HHHHH-HHHHHHHCHHHHHHHHHHHHHHS---CCC---S-THHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred             --CChH---HHHHH-HHHHHhcCHHHHHHHHHHHHhcC---Ccc---h-HHHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence              2322   12222 33466799999999999877751   111   1 1235788888999999999999999887665


Q ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812          364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL  434 (630)
Q Consensus       364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  434 (630)
                      ..+....++..+|.++...|++++|..++++++.+...    +       +...+.++...|++++|++.+
T Consensus       210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~-------~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH----N-------FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT----T-------CHHHHHHHHHHHHHHHC----
T ss_pred             ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch----h-------HHHHHHHHHHHHHHHhhHHHH
Confidence            55555789999999999999999999999999876311    1       223466778889999998876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.81  E-value=4.4e-19  Score=162.10  Aligned_cols=221  Identities=17%  Similarity=0.155  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812          289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR  368 (630)
Q Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  368 (630)
                      ..+..+..+|..+...|++++|+.++++++..      .|....++..+|.++...|++++|+..+++++...+..    
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----   90 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA----   90 (243)
T ss_dssp             ---------------------CCTTHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----
Confidence            44567889999999999999999999998874      56678899999999999999999999999999875543    


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                      ..++..+|.++...|++++|+.+++++++..        +....++..+|.++...|++++|+.++++++...     +.
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~  157 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----EN  157 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TT
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----Cc
Confidence            4588999999999999999999999998875        2334678999999999999999999999999862     22


Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                        ...++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.+|++++++.    
T Consensus       158 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----  223 (243)
T 2q7f_A          158 --DTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ----  223 (243)
T ss_dssp             --CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC----
T ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC----
Confidence              2457899999999999999999999999884        34556689999999999999999999999999852    


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcC
Q 006812          529 GPHHADSIEACQNLSKAYSSMG  550 (630)
Q Consensus       529 ~~~~~~~~~~~~~la~~~~~~g  550 (630)
                          |+...++..++.+....|
T Consensus       224 ----p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          224 ----PDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             ----TTCHHHHHHHTC------
T ss_pred             ----cchHHHHHHHHHHHhhcc
Confidence                444456666665554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.81  E-value=5e-18  Score=170.36  Aligned_cols=218  Identities=14%  Similarity=0.101  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccCh-HHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHH
Q 006812          131 MTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRF-SDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAV  209 (630)
Q Consensus       131 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  209 (630)
                      .....+++++...+.....   .+..+.++..+|.++...|++ ++|+.+|++++++                .|....+
T Consensus        79 ~~~~~~~~al~~l~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----------------~p~~~~a  139 (474)
T 4abn_A           79 DVQEEMEKTLQQMEEVLGS---AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----------------EPELVEA  139 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----------------CTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----------------CCCCHHH
Confidence            3444455555555443222   235678889999999999999 9999999999998                3344578


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHh
Q 006812          210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV---------LNFKEALPFGLKALEIHK  280 (630)
Q Consensus       210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~  280 (630)
                      ++.+|.+|...|++++|+.+|++++++.        |. ..++..+|.++...         |++++|+.+|++++++.+
T Consensus       140 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  210 (474)
T 4abn_A          140 WNQLGEVYWKKGDVTSAHTCFSGALTHC--------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV  210 (474)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTC--------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence            8899999999999999999999998542        33 48899999999999         999999999999999744


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHHHHcCCHHH
Q 006812          281 KGLGHNSVEVAHDRRLLGVIYSGL--------EEHQKALEQNELSQKVLKTWGLSS---ELLRAEIDAANMQIALGKFEE  349 (630)
Q Consensus       281 ~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~  349 (630)
                              ....++.++|.+|...        |++++|+.+|++++++      .|   ....++.++|.+|...|++++
T Consensus       211 --------~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~~~  276 (474)
T 4abn_A          211 --------LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESYGE  276 (474)
T ss_dssp             --------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred             --------CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCHHH
Confidence                    2356788999999999        9999999999999998      66   789999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812          350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI  394 (630)
Q Consensus       350 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  394 (630)
                      |+..|+++++..+.+    ..++..++.++...|++++|+..+.+
T Consensus       277 A~~~~~~al~l~p~~----~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          277 ALEGFSQAAALDPAW----PEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999976655    44889999999999999999886654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.81  E-value=2e-18  Score=149.95  Aligned_cols=168  Identities=18%  Similarity=0.234  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                      +.+|+++|.+|...|++++|+.+|++++++.        |....++..+|.+|...|++++|+..+.+++..     .+.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~   71 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTT   71 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cch
Confidence            4589999999999999999999999999874        556689999999999999999999999999885     222


Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                        ...++..+|.++...++++.|...+.+++.+        .|....++..+|.+|..+|++++|+..|++++++     
T Consensus        72 --~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----  136 (184)
T 3vtx_A           72 --SAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----  136 (184)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----
Confidence              2457889999999999999999999999984        3556678899999999999999999999999984     


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                         +|....++.++|.+|..+|++++|+.+|++++++.+
T Consensus       137 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          137 ---KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             ---cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence               456668999999999999999999999999998644

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.80  E-value=5.2e-18  Score=155.87  Aligned_cols=202  Identities=12%  Similarity=0.001  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812          331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV  410 (630)
Q Consensus       331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  410 (630)
                      ..++..+|.++...|++++|+..+++++...+..    ..++..+|.++...|++++|+.++++++...        |..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~  104 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKALASD--------SRN  104 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCc
Confidence            6677777777777777777777777777754333    3467777788888888888888887777653        233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      ..++..+|.++...|++++|+.++++++.     .+..+....++..+|.++...|++++|+.+++++++.        .
T Consensus       105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~  171 (252)
T 2ho1_A          105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------N  171 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Confidence            46677788888888888888888877765     0112223556777888888888888888888887763        2


Q ss_pred             ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      |....++..+|.++...|++++|+.++++++..        .|....++..++.++...|++++|..+++++++.
T Consensus       172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            344557778888888888888888888887662        2334456777888888888888888888877765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=2.5e-18  Score=172.60  Aligned_cols=221  Identities=13%  Similarity=0.073  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 006812          175 DSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRR-EEALEHLQKCLEIKELILEEDSRELGVANR  253 (630)
Q Consensus       175 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  253 (630)
                      .....+++++..++......         +..+.+++.+|.++...|++ ++|+.+|++++++.        |....++.
T Consensus        79 ~~~~~~~~al~~l~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------p~~~~a~~  141 (474)
T 4abn_A           79 DVQEEMEKTLQQMEEVLGSA---------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--------PELVEAWN  141 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC---------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccC---------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--------CCCHHHHH
Confidence            44445555555554433222         33467888999999999999 99999999999653        33467899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHHHHHc
Q 006812          254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL---------EEHQKALEQNELSQKVLKTW  324 (630)
Q Consensus       254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~  324 (630)
                      .+|.+|...|++++|+.+|++++++.+        . ..++.++|.++...         |++++|+.+|++++++    
T Consensus       142 ~lg~~~~~~g~~~~A~~~~~~al~~~p--------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----  208 (474)
T 4abn_A          142 QLGEVYWKKGDVTSAHTCFSGALTHCK--------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----  208 (474)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTTCC--------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC--------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----
Confidence            999999999999999999999997532        2 37889999999999         9999999999999997    


Q ss_pred             CCChhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 006812          325 GLSSELLRAEIDAANMQIAL--------GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIAC  396 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  396 (630)
                        .|....++..+|.+|...        |++++|+..|+++++..+. ....+.++.++|.+|...|++++|+.+|++++
T Consensus       209 --~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          209 --DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              677888999999999999        9999999999999997652 11335699999999999999999999999999


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          397 GILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR  436 (630)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  436 (630)
                      ++.        |....++..++.++...|++++|+..+.+
T Consensus       286 ~l~--------p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          286 ALD--------PAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHC--------TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            875        45568899999999999999999886644

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.80  E-value=1.4e-18  Score=158.67  Aligned_cols=219  Identities=15%  Similarity=0.085  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812          247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL  326 (630)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  326 (630)
                      ..+..+..+|.++...|++++|+.+|+++++..        +....++..+|.++...|++++|+.++++++..      
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------   86 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--------KEDAIPYINFANLLSSVNELERALAFYDKALEL------   86 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence            346778999999999999999999999998732        233577889999999999999999999999887      


Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      .+....++..+|.++...|++++|+..++++++..+.+    ..++..+|.++...|++++|+.++++++...       
T Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------  155 (243)
T 2q7f_A           87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------  155 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------
T ss_pred             CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------
Confidence            56678889999999999999999999999999976554    3478999999999999999999999998764       


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                       |....++..+|.++...|++++|+.++++++..     .+.  ...++..+|.++...|++++|+.++++++++     
T Consensus       156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----  222 (243)
T 2q7f_A          156 -ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----DPG--HADAFYNAGVTYAYKENREKALEMLDKAIDI-----  222 (243)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----
T ss_pred             -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Ccc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----
Confidence             334568899999999999999999999999886     222  2457899999999999999999999999984     


Q ss_pred             CCCCccHHHHHHHHHHHHHH
Q 006812          487 GPKHFGVGYIYNNLGAAYLE  506 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~~~~  506 (630)
                         .|....++..++.+...
T Consensus       223 ---~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          223 ---QPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             ---CTTCHHHHHHHTC----
T ss_pred             ---CcchHHHHHHHHHHHhh
Confidence               24444455555554433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.80  E-value=4.8e-18  Score=147.61  Aligned_cols=169  Identities=20%  Similarity=0.233  Sum_probs=131.9

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      +.+|+.+|.+|...|++++|+..|++++++                .|....++..+|.+|...|++++|+..+.+++..
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~   68 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----------------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL   68 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            456788888888888888888888888887                2333567778888888888888888888887743


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006812          237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL  316 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  316 (630)
                      .        |....++..+|.++...++++.|...+.+++.+.+        ....++..+|.+|...|++++|+..|++
T Consensus        69 ~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (184)
T 3vtx_A           69 D--------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT--------VYADAYYKLGLVYDSMGEHDKAIEAYEK  132 (184)
T ss_dssp             C--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             C--------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            2        22356677888888888888888888888887543        2245677788888888888888888888


Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          317 SQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       317 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                      ++++      +|....++.++|.+|..+|++++|+..|+++++..++
T Consensus       133 ~l~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          133 TISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHh------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            8876      6677788888888888888888888888888876543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.79  E-value=1.5e-17  Score=149.82  Aligned_cols=206  Identities=11%  Similarity=0.076  Sum_probs=145.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      .|....++..+|.++...|++++|+..+++++...+..    ..++..+|.++...|++++|..++++++...       
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------   72 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------   72 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------
Confidence            35566677777777777777777777777777755433    3467777778888888888888887777653       


Q ss_pred             cHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          407 PEEVADAYSEISMQYESM-NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                       |....++..+|.++... |++++|+.++++++.    . +..+....++..+|.++...|++++|+.+++++++.    
T Consensus        73 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  142 (225)
T 2vq2_A           73 -PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA----D-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA----  142 (225)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----S-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             -CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----C-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence             23345677788888888 888888888887776    1 112223456777888888888888888888887763    


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA-DSIEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                          .|....++..+|.++...|++++|+.++++++...        | ....++..++.++...|++++|..+++.+.+
T Consensus       143 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          143 ----QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             ----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                23445577788888888888888888888877743        2 2234566777777888888888877777665


Q ss_pred             H
Q 006812          565 A  565 (630)
Q Consensus       565 ~  565 (630)
                      .
T Consensus       211 ~  211 (225)
T 2vq2_A          211 N  211 (225)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.79  E-value=1.5e-17  Score=152.76  Aligned_cols=204  Identities=14%  Similarity=0.011  Sum_probs=176.4

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .+.++..+|.++...|++++|+.+|++++..                .+....++..+|.++...|++++|+.+|+++++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~   99 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------------DPSSADAHAALAVVFQTEMEPKLADEEYRKALA   99 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3788999999999999999999999999987                222356788999999999999999999999986


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE  315 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  315 (630)
                      ..        |....++..+|.++...|++++|+.++++++.      ....+....++..+|.++...|++++|+.+++
T Consensus       100 ~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  165 (252)
T 2ho1_A          100 SD--------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFE  165 (252)
T ss_dssp             HC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HC--------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            53        22357889999999999999999999999886      11345567788999999999999999999999


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812          316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA  395 (630)
Q Consensus       316 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  395 (630)
                      ++++.      .|....++..+|.++...|++++|+..+++++...+..    ...+..++.++...|++++|..+++++
T Consensus       166 ~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          166 KSLRL------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN----ARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99886      45567888999999999999999999999998865433    447889999999999999999999998


Q ss_pred             HHHH
Q 006812          396 CGIL  399 (630)
Q Consensus       396 ~~~~  399 (630)
                      ++..
T Consensus       236 ~~~~  239 (252)
T 2ho1_A          236 KRLY  239 (252)
T ss_dssp             HHHC
T ss_pred             HHHC
Confidence            8764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.79  E-value=2.1e-16  Score=167.14  Aligned_cols=314  Identities=14%  Similarity=0.093  Sum_probs=229.5

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      ...+|..+|.++...|++++|+..|.++-.                     ...|..+|.++...|+|++|+++|..+.+
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKAdD---------------------~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKADD---------------------PSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhcCC---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            356788999999999999999999977611                     25677899999999999999999999886


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE  315 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  315 (630)
                      ..+.         ..+...+|.+|.+.+++++ ++.|.+            .+.. ..+..+|..+...|+|++|..+|.
T Consensus      1163 ~~~e---------~~Idt~LafaYAKl~rlee-le~fI~------------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A         1163 KARE---------SYVETELIFALAKTNRLAE-LEEFIN------------GPNN-AHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred             hccc---------ccccHHHHHHHHhhcCHHH-HHHHHh------------CCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4421         1123348999999999885 443321            1112 345579999999999999999998


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812          316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA  395 (630)
Q Consensus       316 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  395 (630)
                      ++              ..+..++.++..+|++++|++.++++..         ..+|...+.++...|+|..|..+... 
T Consensus      1220 kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n---------~~aWkev~~acve~~Ef~LA~~cgl~- 1275 (1630)
T 1xi4_A         1220 NV--------------SNFGRLASTLVHLGEYQAAVDGARKANS---------TRTWKEVCFACVDGKEFRLAQMCGLH- 1275 (1630)
T ss_pred             hh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC---------HHHHHHHHHHHhhhhHHHHHHHHHHh-
Confidence            74              4678899999999999999999999833         35899999999999999999987663 


Q ss_pred             HHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH--cCChhhHHH
Q 006812          396 CGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL--TGKVPQAIP  473 (630)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~  473 (630)
                      +.           ..+..+..++..|...|.+++|+.+++.++.+.       ......+..+|.+|.+  -++..++++
T Consensus      1276 Ii-----------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A         1276 IV-----------VHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred             hh-----------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence            21           122455688999999999999999999998762       2223466677777765  466777888


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH------HHHhcCCCCHHHHHHHHHHHHHHH
Q 006812          474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI------MDVSLGPHHADSIEACQNLSKAYS  547 (630)
Q Consensus       474 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~la~~~~  547 (630)
                      +|...+.+-+-.   .--..+..|..+..+|.+-|+++.|+...-+....      +....  ..+...+.++.....|.
T Consensus      1338 ~f~~rini~k~~---r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A         1338 LFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYL 1412 (1630)
T ss_pred             HHHHhcccchHh---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHHHH
Confidence            887766532111   11245567889999999999999999544333211      11111  22344567787788777


Q ss_pred             hcC---------------CHHHHHHHHH
Q 006812          548 SMG---------------SYTLAIEFQQ  560 (630)
Q Consensus       548 ~~g---------------~~~~A~~~~~  560 (630)
                      ..+               ++..+...+.
T Consensus      1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            666               6666666665

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.79  E-value=2e-18  Score=179.49  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812          366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP  445 (630)
Q Consensus       366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  445 (630)
                      |..+.+++++|.+|..+|++++|+.+|++++++.        |+...++.++|.+|..+|++++|+.+|++++++     
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----   72 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----   72 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            3445566666666666666666666666666653        344566777777777777777777777777765     


Q ss_pred             CCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                      .++  ...++.++|.++..+|++++|++.|++++++        +|....++.++|.+|..+|++++|+..|++++++  
T Consensus        73 ~P~--~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--  140 (723)
T 4gyw_A           73 SPT--FADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--  140 (723)
T ss_dssp             CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            211  2346677777777777777777777777763        3455566777777777777777777777777764  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       526 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                            +|+...++.++|.+|..+|++++|.+.+++++++...
T Consensus       141 ------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          141 ------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             ------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             ------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence                  2444466777777777777777777777777766554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.78  E-value=5.2e-17  Score=146.26  Aligned_cols=206  Identities=13%  Similarity=0.007  Sum_probs=175.9

Q ss_pred             hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      +..+.++..+|.++...|++++|+..+++++..                .|....++..+|.++...|++++|+.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   68 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS----------------DPKNELAWLVRAEIYQYLKVNDKAQESFRQA   68 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            467788899999999999999999999999987                2223467888999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHH
Q 006812          234 LEIKELILEEDSRELGVANRDLAEAFVAV-LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALE  312 (630)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  312 (630)
                      ++..        |....++..+|.++... |++++|+.+++++++ .     +..+....++..+|.++...|++++|+.
T Consensus        69 ~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~  134 (225)
T 2vq2_A           69 LSIK--------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-----PTYPTPYIANLNKGICSAKQGQFGLAEA  134 (225)
T ss_dssp             HHHC--------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-----TTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhC--------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-----cCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            8653        22356789999999999 999999999999987 1     1344556788899999999999999999


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHHHHHhhccHHHHHHH
Q 006812          313 QNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE-KESETRALVFISMGKALCNQEKFADAKRC  391 (630)
Q Consensus       313 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~  391 (630)
                      +++++++.      .|....++..+|.++...|++++|+..+++++...+ ..    ...+..++.++...|++++|..+
T Consensus       135 ~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~  204 (225)
T 2vq2_A          135 YLKRSLAA------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ----ADDLLLGWKIAKALGNAQAAYEY  204 (225)
T ss_dssp             HHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCcHHHHHHH
Confidence            99999886      556678899999999999999999999999999766 33    23567888899999999999999


Q ss_pred             HHHHHHHH
Q 006812          392 LEIACGIL  399 (630)
Q Consensus       392 ~~~a~~~~  399 (630)
                      ++.+....
T Consensus       205 ~~~~~~~~  212 (225)
T 2vq2_A          205 EAQLQANF  212 (225)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            98876653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.78  E-value=8e-18  Score=175.03  Aligned_cols=173  Identities=17%  Similarity=0.172  Sum_probs=113.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      .|+.+.++.++|.+|..+|++++|+..|+++++..+.+    +.++.++|.+|..+|++++|+.+|++++++.       
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-------   73 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-------   73 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence            35666666666666666666666666666666654433    3366667777777777777777777766653       


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                       |+.+.++.++|.++..+|++++|++.|++++++     .+.  ...++.++|.+|..+|++++|+..|++++++     
T Consensus        74 -P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----  140 (723)
T 4gyw_A           74 -PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPA--FADAHSNLASIHKDSGNIPEAIASYRTALKL-----  140 (723)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence             445566777777777777777777777777765     211  2346677777777777777777777777763     


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812          487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDV  526 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  526 (630)
                         .|+...++.++|.++..+|++++|.+.+++++++...
T Consensus       141 ---~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          141 ---KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             ---CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             ---CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence               3445556777777777777777777777777766543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.77  E-value=1.5e-17  Score=164.34  Aligned_cols=152  Identities=11%  Similarity=0.035  Sum_probs=143.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812          415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV  493 (630)
Q Consensus       415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  493 (630)
                      ...+..+..+|++++|+.++++++++.++..+++|+. +.++.+||.+|..+|+|++|+.++++++++.++.+|++||.+
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            3445557789999999999999999999999999997 677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      +.++++||.+|..+|++++|+.+|++|+++....+|++||.+.++..+++.++..+|.+++|...|+++.+..
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.76  E-value=3.6e-17  Score=147.58  Aligned_cols=183  Identities=15%  Similarity=0.154  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTE-KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      +..+..+|.++...|++++|+..|++++...+ .+.    .++..+|.++...|++++|+.++++++...        |.
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~   74 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKN--------YN   74 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CS
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------cc
Confidence            47888999999999999999999999999876 332    377779999999999999999999998754        56


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-----hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-----GSVSARIGWLLLLTGKVPQAIPYLESAAERLKE  484 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  484 (630)
                      ...++..+|.+|...|++++|+..+++++.+.     +..+.     ..++..+|.++...|++++|+.+|+++++    
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----  145 (228)
T 4i17_A           75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD----  145 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh----
Confidence            77899999999999999999999999999873     33332     25689999999999999999999999997    


Q ss_pred             hcCCCCcc--HHHHHHHHHHHHHHcCCh---------------------------hHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          485 SFGPKHFG--VGYIYNNLGAAYLELDRP---------------------------QSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       485 ~~~~~~~~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                          .+|.  ...++.++|.+|...|+.                           ++|+.+|++++++.        |+.
T Consensus       146 ----~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~--------p~~  213 (228)
T 4i17_A          146 ----VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS--------PNR  213 (228)
T ss_dssp             ----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------TTC
T ss_pred             ----cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCC
Confidence                4577  788999999999999988                           88888888888852        333


Q ss_pred             HHHHHHHHHHH
Q 006812          536 IEACQNLSKAY  546 (630)
Q Consensus       536 ~~~~~~la~~~  546 (630)
                      ..+...++.+.
T Consensus       214 ~~~~~~l~~i~  224 (228)
T 4i17_A          214 TEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            35555555554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.75  E-value=5.2e-17  Score=149.83  Aligned_cols=208  Identities=15%  Similarity=0.061  Sum_probs=170.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812          205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG  284 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  284 (630)
                      .....++.+|..+...|++++|+..|+++++..     ++++....++..+|.+|...|++++|+..|+++++..+    
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p----   83 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ----   83 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC----
Confidence            345678899999999999999999999988543     45555688999999999999999999999999999765    


Q ss_pred             CCCHHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHHHHcCCChhHHHHH--------------HHHHHHHH
Q 006812          285 HNSVEVAHDRRLLGVIYSG--------LEEHQKALEQNELSQKVLKTWGLSSELLRAE--------------IDAANMQI  342 (630)
Q Consensus       285 ~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~la~~~~  342 (630)
                       +++....+++.+|.++..        .|++++|+..|++++...   ...+....+.              ..+|.+|.
T Consensus        84 -~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  159 (261)
T 3qky_A           84 -IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYE  159 (261)
T ss_dssp             -TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             455667889999999999        999999999999988762   2223333343              88999999


Q ss_pred             HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh----------ccHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Q 006812          343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ----------EKFADAKRCLEIACGILDKKETISPEEVAD  412 (630)
Q Consensus       343 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  412 (630)
                      ..|++++|+..|++++...+... ....++..+|.+|...          |++++|+..++++++...     +++....
T Consensus       160 ~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~  233 (261)
T 3qky_A          160 RRELYEAAAVTYEAVFDAYPDTP-WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-----DSPLLRT  233 (261)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTST-THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----TCTHHHH
T ss_pred             HccCHHHHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----CChHHHH
Confidence            99999999999999999776543 2466899999999977          999999999999988753     3356677


Q ss_pred             HHHHHHHHHHHcCCHHHHH
Q 006812          413 AYSEISMQYESMNEFETAI  431 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~  431 (630)
                      +...++.++...++++++.
T Consensus       234 a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          234 AEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHhhhhh
Confidence            7888888888877776543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.75  E-value=6.3e-17  Score=149.29  Aligned_cols=208  Identities=10%  Similarity=0.010  Sum_probs=169.6

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      ..+..++.+|..++..|++++|+..|++++..         .|.    .+....+++.+|.++...|++++|+..|++++
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   79 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---------GRT----HEWAADAQFYLARAYYQNKEYLLAASEYERFI   79 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---------CSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCC----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            45677889999999999999999999999886         222    22335788899999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH------------
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVA--------VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR------------  294 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------  294 (630)
                      +..     ++++....+++.+|.++..        .|++++|+..|+++++..+.     ++....++            
T Consensus        80 ~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~a~~~~~~~~~~~~~  149 (261)
T 3qky_A           80 QIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-----HELVDDATQKIRELRAKLAR  149 (261)
T ss_dssp             HHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-----CTTHHHHHHHHHHHHHHHHH
T ss_pred             HHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-----chhHHHHHHHHHHHHHHHHH
Confidence            764     4556677899999999999        99999999999999987653     33333333            


Q ss_pred             --HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHhh
Q 006812          295 --RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL----------GKFEEAINTLKGVVRQTE  362 (630)
Q Consensus       295 --~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~~~~  362 (630)
                        ..+|.+|...|++++|+..|+++++.   ....+....++..+|.+|...          |++++|+..|+++++..+
T Consensus       150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          150 KQYEAARLYERRELYEAAAVTYEAVFDA---YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence              78999999999999999999988875   222344788999999999977          999999999999999877


Q ss_pred             hcchHHHHHHHHHHHHHHhhccHHHHH
Q 006812          363 KESETRALVFISMGKALCNQEKFADAK  389 (630)
Q Consensus       363 ~~~~~~~~~~~~la~~~~~~~~~~~A~  389 (630)
                      .++ ....+...++.++...++++++.
T Consensus       227 ~~~-~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          227 DSP-LLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             TCT-HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCh-HHHHHHHHHHHHHHHHHHhhhhh
Confidence            554 33556777788887777776543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.73  E-value=8.3e-16  Score=144.25  Aligned_cols=195  Identities=13%  Similarity=0.078  Sum_probs=159.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      .....+...+..+...|++++|+..+.++++..+...  ......+..+|.++...|++++|+.++++++.+.....  +
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~  150 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--D  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--C
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--c
Confidence            3344556678888999999999999999988665432  23345667799999999999999999999987654332  3


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                      ....+.++.++|.+|...|++++|+.+|++++++.+...+.......++.++|.+|..+|++++|+.++++++++.... 
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-  229 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-  229 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-
Confidence            3346779999999999999999999999999999887754322234688999999999999999999999999987543 


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHHHHh
Q 006812          487 GPKHFGVGYIYNNLGAAYLELDRPQSA-AQVFAFAKDIMDVS  527 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~~~~  527 (630)
                       ......+.++.++|.+|..+|++++| ..+|++++.+.+..
T Consensus       230 -~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          230 -NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             -TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             -CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence             34556788999999999999999999 88899999988764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.73  E-value=2.9e-16  Score=141.60  Aligned_cols=198  Identities=13%  Similarity=0.048  Sum_probs=155.2

Q ss_pred             HHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          158 MCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK  237 (630)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  237 (630)
                      ..++.+|.++...|++++|+..|++++.+...               ....+++.+|.++...|++++|+.+|+++++. 
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-   71 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-   71 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-
Confidence            67889999999999999999999999998210               11256667999999999999999999999843 


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHHHhccccHHHHHHH
Q 006812          238 ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV----EVAHDRRLLGVIYSGLEEHQKALEQ  313 (630)
Q Consensus       238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~  313 (630)
                             .|....++..+|.+|...|++++|+..+++++++.+.     ++    ..+.++..+|.++...|++++|+.+
T Consensus        72 -------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  139 (228)
T 4i17_A           72 -------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----NATIEKLYAIYYLKEGQKFQQAGNIEKAEEN  139 (228)
T ss_dssp             -------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence                   3555788999999999999999999999999987653     32    3446789999999999999999999


Q ss_pred             HHHHHHHHHHcCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHH
Q 006812          314 NELSQKVLKTWGLSSE--LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRC  391 (630)
Q Consensus       314 ~~~a~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  391 (630)
                      |++++++      .|.  ...++.++|.+|...|+.     .+.++.........      ...+......+.+++|+.+
T Consensus       140 ~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~A~~~  202 (228)
T 4i17_A          140 YKHATDV------TSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKE------KYASEKAKADAAFKKAVDY  202 (228)
T ss_dssp             HHHHTTS------SCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHH------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc------CCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHH------HHHHHHHHHHHHHHHHHHH
Confidence            9998876      677  889999999999877654     33333333222211      1123334456778888888


Q ss_pred             HHHHHHHHH
Q 006812          392 LEIACGILD  400 (630)
Q Consensus       392 ~~~a~~~~~  400 (630)
                      +++++++..
T Consensus       203 ~~~a~~l~p  211 (228)
T 4i17_A          203 LGEAVTLSP  211 (228)
T ss_dssp             HHHHHHHCT
T ss_pred             HHHHhhcCC
Confidence            888887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.73  E-value=1.5e-16  Score=157.10  Aligned_cols=152  Identities=13%  Similarity=0.037  Sum_probs=143.8

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-  451 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  451 (630)
                      ...+..+..+|+|++|+..+++++++..+..+++||..+.++.++|.+|..+|+|++|+.++++++++.++..|++||. 
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            3445567789999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                      +..+++||.+|..+|++++|+.+|++|+++.+..+|++||.++....+++.++..++.+++|...|.++.+-.
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999999999999997644

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.7e-15  Score=151.37  Aligned_cols=243  Identities=11%  Similarity=0.053  Sum_probs=197.8

Q ss_pred             HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCC-CccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 006812          161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGS-VEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL  239 (630)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  239 (630)
                      ...|..+...|+|++|++.|.++++..+...+...... ..........++..+|.+|...|++++|++++.+++.+...
T Consensus         8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~   87 (434)
T 4b4t_Q            8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ   87 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34677788999999999999999987443322110000 00112234456889999999999999999999999988765


Q ss_pred             HhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 006812          240 ILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQK  319 (630)
Q Consensus       240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  319 (630)
                      .  .+......+...+|.++...|++++|+.++++++.+.....  +....+.++.++|.+|...|++++|+.++.+++.
T Consensus        88 ~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           88 F--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             S--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             c--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            4  33444566788899999999999999999999999988653  4456778899999999999999999999999999


Q ss_pred             HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 006812          320 VLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE---SETRALVFISMGKALCNQEKFADAKRCLEIAC  396 (630)
Q Consensus       320 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  396 (630)
                      .....++.+....++..++.+|...|++++|..++++++......   +...+..+..+|.++...+++++|..++.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            988888889999999999999999999999999999999876553   23457788899999999999999999999999


Q ss_pred             HHHHhhcCCCc
Q 006812          397 GILDKKETISP  407 (630)
Q Consensus       397 ~~~~~~~~~~~  407 (630)
                      ...........
T Consensus       244 ~~~~~~~~~~~  254 (434)
T 4b4t_Q          244 ESYHNLTTHNS  254 (434)
T ss_dssp             HHHHHTTTSSC
T ss_pred             HHhhhhhhhhh
Confidence            98876654444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.72  E-value=3.1e-16  Score=147.16  Aligned_cols=193  Identities=13%  Similarity=0.078  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcH
Q 006812          331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR--ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPE  408 (630)
Q Consensus       331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  408 (630)
                      ...+...+..+...|++++|+..+++++...+..+...  ...+..+|.++...+++++|+.++++++.+.....  +..
T Consensus        75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--~~~  152 (293)
T 3u3w_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--CTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--cHH
Confidence            34444557778889999999999999887554433322  44556789999999999999999999998543322  333


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP  488 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (630)
                      ..+.++.++|.+|...|++++|+.+|++++++.+...+.......++.++|.+|..+|++++|+.++++++++....  .
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~  230 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--N  230 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--C
Confidence            55778999999999999999999999999999888744333336688999999999999999999999999988765  3


Q ss_pred             CCccHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHh
Q 006812          489 KHFGVGYIYNNLGAAYLELDR-PQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       489 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~  527 (630)
                      +.+..+.++.++|.+|..+|+ +++|+.+|++|+.+.+..
T Consensus       231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            456678899999999999995 699999999999998765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.71  E-value=3.3e-15  Score=131.90  Aligned_cols=191  Identities=13%  Similarity=0.062  Sum_probs=156.9

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812          218 TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL  297 (630)
Q Consensus       218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  297 (630)
                      ...|++++|...++...        .+.+..+.++..+|.++...|++++|+.++++++.+.....  +.+..+.++.++
T Consensus         3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence            46789999998554432        33346688999999999999999999999999999988642  456778899999


Q ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Q 006812          298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSS-ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFIS  374 (630)
Q Consensus       298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~  374 (630)
                      |.++...|++++|+.++++++.+.+..++.+ ....++.++|.++...|++++|+.++++++......  ....+.++..
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  152 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG  152 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            9999999999999999999999999888664 788899999999999999999999999999876553  3344677899


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812          375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ  420 (630)
Q Consensus       375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  420 (630)
                      +|.++...|++++|..++++++.+.....  ++...+.+...++.+
T Consensus       153 la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          153 LGDLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence            99999999999999999999999987764  334455555555543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.71  E-value=2e-15  Score=133.40  Aligned_cols=194  Identities=13%  Similarity=0.138  Sum_probs=153.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812          342 IALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY  421 (630)
Q Consensus       342 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  421 (630)
                      +..|++++|...++....    ++...+.++..+|.++...|++++|+.++++++.+.....  +++..+.++.++|.++
T Consensus         3 ~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~   76 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA----HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGMVE   76 (203)
T ss_dssp             ----CHHHHHHHHHHHHT----STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHH
Confidence            457888888885544322    3445577999999999999999999999999999887654  4567889999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 006812          422 ESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLG  501 (630)
Q Consensus       422 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  501 (630)
                      ...|++++|+.++++++.+.+...+.......++.++|.++...|++++|+.++++++.+....  .+....+.++.++|
T Consensus        77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la  154 (203)
T 3gw4_A           77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLG  154 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHH
Confidence            9999999999999999999887642222346678999999999999999999999999987664  23445567789999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006812          502 AAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA  545 (630)
Q Consensus       502 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  545 (630)
                      .++...|++++|..++++++.+..+.-  +......++..++.+
T Consensus       155 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          155 DLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence            999999999999999999999987752  223344555555544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.2e-14  Score=145.12  Aligned_cols=236  Identities=12%  Similarity=0.084  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC---------CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 006812          252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN---------SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK  322 (630)
Q Consensus       252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  322 (630)
                      ....|..+...|+|++|++.|.++++..+......         ......++..+|.+|...|++++|++++.+++.+..
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            34457778889999999999999998655422110         123446788999999999999999999999999988


Q ss_pred             HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812          323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKRCLEIACGILD  400 (630)
Q Consensus       323 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  400 (630)
                      ..+.......+...++.++...|++++|+.++++++......  ....+.++..+|.+|...|++++|..++++++....
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            776666666778889999999999999999999999877654  344578899999999999999999999999988776


Q ss_pred             hhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          401 KKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       401 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ...  +.+....++..+|.+|...|++++|..++++++.+......+......++..+|.++...|++++|..+|.++++
T Consensus       167 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          167 KLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             TSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            544  456788999999999999999999999999999998887543333356778999999999999999999999999


Q ss_pred             HHHHhcCCC
Q 006812          481 RLKESFGPK  489 (630)
Q Consensus       481 ~~~~~~~~~  489 (630)
                      .........
T Consensus       245 ~~~~~~~~~  253 (434)
T 4b4t_Q          245 SYHNLTTHN  253 (434)
T ss_dssp             HHHHTTTSS
T ss_pred             Hhhhhhhhh
Confidence            887764333

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.70  E-value=1e-15  Score=143.60  Aligned_cols=196  Identities=9%  Similarity=-0.118  Sum_probs=159.0

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      .....+...+..+...|++++|+..+++++...         +..++ .......+..+|.++...|++++|+.+|++++
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~---------~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al  142 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE---------EYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLL  142 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------CCCHH-HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc---------cCChH-HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            344455566788899999999999999988741         11112 12234566679999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN  314 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  314 (630)
                      ++....  .+....+.++.++|.+|...|++++|+.+|+++++..... +.+.+..+.+++++|.+|..+|++++|+.++
T Consensus       143 ~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~  219 (293)
T 3u3w_A          143 NQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQV  219 (293)
T ss_dssp             HTCCCC--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhccc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            754322  3334557789999999999999999999999999988764 2356677889999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhh
Q 006812          315 ELSQKVLKTWGLSSELLRAEIDAANMQIALG-KFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~  363 (630)
                      ++++++....+.......++.++|.+|..+| .+++|+.++++++.+...
T Consensus       220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~  269 (293)
T 3u3w_A          220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             HHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            9999999888877888889999999999999 469999999998887654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.70  E-value=4.3e-16  Score=163.42  Aligned_cols=224  Identities=13%  Similarity=-0.014  Sum_probs=178.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVV--------RQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGIL  399 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  399 (630)
                      |.........+   ...|++++|+..+++++        +..+    ....++..+|.++...|++++|+..++++++..
T Consensus       391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  463 (681)
T 2pzi_A          391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS----ESVELPLMEVRALLDLGDVAKATRKLDDLAERV  463 (681)
T ss_dssp             TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT----TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc----cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence            33334444444   78999999999999998        4333    335589999999999999999999999999876


Q ss_pred             HhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812          400 DKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAA  479 (630)
Q Consensus       400 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  479 (630)
                              |....+++++|.++...|++++|+..|++++++     .+.  ...++.++|.++..+|++++ +.+|++++
T Consensus       464 --------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~--~~~~~~~lg~~~~~~g~~~~-~~~~~~al  527 (681)
T 2pzi_A          464 --------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPG--ELAPKLALAATAELAGNTDE-HKFYQTVW  527 (681)
T ss_dssp             --------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STT--CSHHHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred             --------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--ChHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence                    556689999999999999999999999999997     222  24588999999999999999 99999999


Q ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH-HHH
Q 006812          480 ERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA-IEF  558 (630)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~  558 (630)
                      ++        +|....+++++|.++..+|++++|+..|+++++        .+|+...++.++|.++...|+.+++ ...
T Consensus       528 ~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~a~~~~~~~~~~~~~~~~~~~~~  591 (681)
T 2pzi_A          528 ST--------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--------TSRHFTTARLTSAVTLLSGRSTSEVTEEQ  591 (681)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--------TSTTHHHHHHHHHHHTC-------CCHHH
T ss_pred             Hh--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--------cCcccHHHHHHHHHHHHccCCCCCCCHHH
Confidence            84        466677999999999999999999999999988        5688889999999999888887777 788


Q ss_pred             HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812          559 QQRAIDAWESHGPSAQDELREARRLLEQLKIK  590 (630)
Q Consensus       559 ~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~  590 (630)
                      +++|++.+....+.......-...+++.....
T Consensus       592 ~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~  623 (681)
T 2pzi_A          592 IRDAARRVEALPPTEPRVLQIRALVLGGALDW  623 (681)
T ss_dssp             HHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Confidence            99999988887666555554445555554443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.70  E-value=1.5e-17  Score=157.66  Aligned_cols=287  Identities=16%  Similarity=0.138  Sum_probs=131.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      +.++|.+++++.          +     ...+|..+|.++...|++++|++.|.++-.                     .
T Consensus        18 ~ld~A~~fae~~----------~-----~~~vWs~La~A~l~~g~~~eAIdsfika~D---------------------~   61 (449)
T 1b89_A           18 NLDRAYEFAERC----------N-----EPAVWSQLAKAQLQKGMVKEAIDSYIKADD---------------------P   61 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHhC----------C-----ChHHHHHHHHHHHHcCCHHHHHHHHHcCCC---------------------H
Confidence            889999998884          1     123788999999999999999999976422                     1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      ..+..++..+...|++++|+.+++.+.+..        +. +.+...++.+|.+.|++.++.++++.             
T Consensus        62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------  119 (449)
T 1b89_A           62 SSYMEVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------  119 (449)
T ss_dssp             --------------------------------------------------------CHHHHTTTTTC-------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------
Confidence            356678889999999999999998877531        11 45677889999999999998877742             


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET  367 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  367 (630)
                      |.. .++..+|..+...|.|++|..+|.++              ..+..+|.++..+|++++|++.++++.     +   
T Consensus       120 pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~---  176 (449)
T 1b89_A          120 PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN-----S---  176 (449)
T ss_dssp             C-----------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----C---
T ss_pred             CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-----C---
Confidence            111 37899999999999999999999864              367889999999999999999999982     1   


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                       ..+|..++.++...|+++.|..+...   +.      .+|+.   ...+..+|.+.|++++|+.++++++.+     + 
T Consensus       177 -~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l-----e-  237 (449)
T 1b89_A          177 -TRTWKEVCFACVDGKEFRLAQMCGLH---IV------VHADE---LEELINYYQDRGYFEELITMLEAALGL-----E-  237 (449)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHTTTT---TT------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS-----T-
T ss_pred             -chhHHHHHHHHHHcCcHHHHHHHHHH---HH------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC-----c-
Confidence             44888999999999999999766553   11      22333   335888999999999999999999875     2 


Q ss_pred             CCchhHHHHHHHHHHHH--cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812          448 QHSEGSVSARIGWLLLL--TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA  518 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  518 (630)
                       .....++..+|.+|.+  .++..+.++.|...+.+-+-.   .--..+..|..+..+|...++|+.|+...-
T Consensus       238 -~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~---~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~  306 (449)
T 1b89_A          238 -RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMM  306 (449)
T ss_dssp             -TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH---HHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence             2234577777877765  456666777666554432210   000223357788999999999999986543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.70  E-value=1e-15  Score=143.69  Aligned_cols=195  Identities=9%  Similarity=-0.122  Sum_probs=156.5

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      ....+...+..+...|++++|+..+++++......          .........++.+|.++...|++++|+.+++++++
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  143 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH----------PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC----------HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC----------hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            34455668889999999999999999998863221          11223445667899999999999999999999997


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH-HHHHHHHHHHHHhccccHHHHHHHH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE-VAHDRRLLGVIYSGLEEHQKALEQN  314 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~  314 (630)
                      +....  .+....+.+++++|.+|...|++++|+.+|++++++.....  +.+. ...+++++|.+|..+|++++|+.++
T Consensus       144 ~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~  219 (293)
T 2qfc_A          144 QQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQV  219 (293)
T ss_dssp             TCCCS--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhcC--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence            65432  23344578999999999999999999999999999877642  2333 3378999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhhhc
Q 006812          315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEA-INTLKGVVRQTEKE  364 (630)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~~~~  364 (630)
                      ++++.+....+.......++.++|.+|...|++++| ..++++++......
T Consensus       220 ~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            999999877666677788889999999999999999 77788888766543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=1.3e-15  Score=143.97  Aligned_cols=224  Identities=11%  Similarity=0.070  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HhhhcchHHHHHH
Q 006812          308 QKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA-------LGKF-------EEAINTLKGVVR-QTEKESETRALVF  372 (630)
Q Consensus       308 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~l~-~~~~~~~~~~~~~  372 (630)
                      ++|+..|++++..      .|....++..+|.++..       .|++       ++|+..|++++. ..+..    ..+|
T Consensus        33 ~~a~~~~~~al~~------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~  102 (308)
T 2ond_A           33 KRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLY  102 (308)
T ss_dssp             HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHH
T ss_pred             HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HHHH
Confidence            6788889988886      57778888888888864       5885       999999999998 44433    4489


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVAD-AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE  451 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  451 (630)
                      ..+|.++...|++++|...|++++++.        |.... +|..+|.++...|++++|...|+++++.     .+.  .
T Consensus       103 ~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~--~  167 (308)
T 2ond_A          103 FAYADYEESRMKYEKVHSIYNRLLAIE--------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ART--R  167 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSS--------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTC--C
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcc--------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC--C
Confidence            999999999999999999999998753        22223 8899999999999999999999999874     121  2


Q ss_pred             hHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812          452 GSVSARIGWLLLL-TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP  530 (630)
Q Consensus       452 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  530 (630)
                      ..++...+.+... .|++++|+.+|+++++..        |.....+..+|.++...|++++|...|++++...     .
T Consensus       168 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----~  234 (308)
T 2ond_A          168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----S  234 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----S
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----C
Confidence            3455555555433 799999999999999853        4556788999999999999999999999998831     0


Q ss_pred             CCHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          531 HHAD-SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       531 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      ..|+ ...++..++..+...|++++|..+++++++.++..
T Consensus       235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence            1332 45688889999999999999999999999887653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=7.1e-15  Score=138.91  Aligned_cols=225  Identities=10%  Similarity=-0.014  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhh-------ccCh-------HHHHHHHHHHHH-HHhHhhhcC
Q 006812          130 EMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYS-------FKRF-------SDSLGYLSKANR-MLGRLEEEG  194 (630)
Q Consensus       130 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~  194 (630)
                      ++|+..|++++...+.          .+.++..+|..+..       .|++       ++|+..|++|+. +        
T Consensus        33 ~~a~~~~~~al~~~p~----------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------   94 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH----------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------   94 (308)
T ss_dssp             HHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------
T ss_pred             HHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------
Confidence            6899999999987633          35667778877763       5886       899999999988 4        


Q ss_pred             CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006812          195 LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLK  274 (630)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  274 (630)
                              .|....++..+|.++...|++++|...|++++++.     +.++.  .++..+|.++...|++++|...|++
T Consensus        95 --------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           95 --------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDPT--LVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             --------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSCTH--HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             --------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----ccCcc--HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                    23335678899999999999999999999999632     22221  2789999999999999999999999


Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 006812          275 ALEIHKKGLGHNSVEVAHDRRLLGVIYS-GLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINT  353 (630)
Q Consensus       275 al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  353 (630)
                      +++..+     ..   ..++...+.+.. ..|++++|+..|+++++.      .|.....+..++.++...|++++|..+
T Consensus       160 a~~~~p-----~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~A~~~  225 (308)
T 2ond_A          160 AREDAR-----TR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLAYIDYLSHLNEDNNTRVL  225 (308)
T ss_dssp             HHTSTT-----CC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHhcCC-----CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            997533     22   233444454433 379999999999999987      455678889999999999999999999


Q ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812          354 LKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDK  401 (630)
Q Consensus       354 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  401 (630)
                      |++++....-.+.....+|..++..+...|++++|...++++++....
T Consensus       226 ~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            999998521111122457888899999999999999999999887743

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.67  E-value=6.7e-17  Score=153.27  Aligned_cols=296  Identities=15%  Similarity=0.092  Sum_probs=133.5

Q ss_pred             HHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Q 006812          165 SANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEED  244 (630)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  244 (630)
                      .+....|+.++|.+++++.-.                     ..+|..+|.++...|++++|++.|.++-         +
T Consensus        11 ~ll~~~~~ld~A~~fae~~~~---------------------~~vWs~La~A~l~~g~~~eAIdsfika~---------D   60 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERCNE---------------------PAVWSQLAKAQLQKGMVKEAIDSYIKAD---------D   60 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhCCC---------------------hHHHHHHHHHHHHcCCHHHHHHHHHcCC---------C
Confidence            344567888888888877511                     1478899999999999999999997641         1


Q ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc
Q 006812          245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW  324 (630)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  324 (630)
                          ...+..++..+...|++++|+.+++.+.+..+        + ..+...++.+|.+.|++.++.+++.         
T Consensus        61 ----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~--------~-~~i~~~Li~~Y~Klg~l~e~e~f~~---------  118 (449)
T 1b89_A           61 ----PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--------E-SYVETELIFALAKTNRLAELEEFIN---------  118 (449)
T ss_dssp             -------------------------------------------------------------CHHHHTTTTT---------
T ss_pred             ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc--------c-chhHHHHHHHHHHhCCHHHHHHHHc---------
Confidence                34688888999999999999999998876321        1 3446678999999999999887774         


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC
Q 006812          325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET  404 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  404 (630)
                        .|. ..++..+|..+...|+|++|..+|.++            ..|..+|.++.++|++++|++.+.++.        
T Consensus       119 --~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------  175 (449)
T 1b89_A          119 --GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN--------  175 (449)
T ss_dssp             --CC-----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------
T ss_pred             --CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC--------
Confidence              232 348999999999999999999999975            378899999999999999999999871        


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812          405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKE  484 (630)
Q Consensus       405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  484 (630)
                           ...+|...+.++...|+++.|..+...       + . .+|+  -...++.+|.+.|++++|+.++++++.+   
T Consensus       176 -----~~~~Wk~v~~aCv~~~ef~lA~~~~l~-------L-~-~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~l---  236 (449)
T 1b89_A          176 -----STRTWKEVCFACVDGKEFRLAQMCGLH-------I-V-VHAD--ELEELINYYQDRGYFEELITMLEAALGL---  236 (449)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHTTTT-------T-T-TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred             -----CchhHHHHHHHHHHcCcHHHHHHHHHH-------H-H-hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCC---
Confidence                 226788889999999999999665543       1 1 2332  3456888999999999999999999872   


Q ss_pred             hcCCCCccHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812          485 SFGPKHFGVGYIYNNLGAAYLEL--DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       485 ~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  562 (630)
                           .+....++..||.+|.+-  ++..++++.|...+.+.+-+   .--+....|..+..+|..-++++.|...+-+.
T Consensus       237 -----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~---~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          237 -----ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             -----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH---HHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             -----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence                 244455777788777653  45566666665444332100   00022356888999999999999998765544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.66  E-value=2.6e-15  Score=130.46  Aligned_cols=170  Identities=20%  Similarity=0.204  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                      ....+..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+.++++++..     .+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~   73 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----AP   73 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC
Confidence            35577778888888888888888887765432        233567788888888888888888888888876     11


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                        ....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...   
T Consensus        74 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---  140 (186)
T 3as5_A           74 --DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---  140 (186)
T ss_dssp             --TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             --CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---
Confidence              12457788888888889999999888888874        24445678888888999999999999998888742   


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          528 LGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       528 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                           |....++..+|.++...|++++|..++++++++.+.
T Consensus       141 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          141 -----PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             -----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence                 333468888899999999999999999988877654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.65  E-value=2.5e-14  Score=121.17  Aligned_cols=156  Identities=18%  Similarity=0.168  Sum_probs=134.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812          204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL  283 (630)
Q Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  283 (630)
                      ...+.++..+|.++...|++++|+.++++++++.+..  .+....+.++..+|.++...|++++|+.++++++.+.+.. 
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-   82 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-   82 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Confidence            4556788899999999999999999999999998875  5566777899999999999999999999999999998764 


Q ss_pred             CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                       .+.+....++.++|.++...|++++|+.++++++.+....+..+....++..+|.++...|++++|+.+++++++....
T Consensus        83 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           83 -KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             -CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence             2445567788899999999999999999999999998887777777888888888888889999888888888876543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.64  E-value=2.1e-14  Score=121.58  Aligned_cols=158  Identities=18%  Similarity=0.244  Sum_probs=137.7

Q ss_pred             hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      ...+.++..+|.++...|++++|+.++++++.+.+...+          ......++..+|.++...|++++|+.+++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD----------KAAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356788999999999999999999999999999776533          2355678899999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHH
Q 006812          234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ  313 (630)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  313 (630)
                      +++.+..  .+.+....++..+|.++...|++++|+.++++++++.+...  +.+....++..+|.++...|++++|+.+
T Consensus        76 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A           76 LLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence            9998776  56667788999999999999999999999999999987642  4456788899999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 006812          314 NELSQKVLKTWG  325 (630)
Q Consensus       314 ~~~a~~~~~~~~  325 (630)
                      +++++++.+..+
T Consensus       152 ~~~a~~~~~~~~  163 (164)
T 3ro3_A          152 AEKHLEISREVG  163 (164)
T ss_dssp             HHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhC
Confidence            999999865543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.64  E-value=1.2e-15  Score=126.73  Aligned_cols=147  Identities=10%  Similarity=0.058  Sum_probs=121.7

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS  453 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  453 (630)
                      .||.++...|++++|+..+++++...        |.....++.+|.+|...|++++|+.+|++++++     .+.  ...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~--------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~--~~~   66 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSP--------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QER--DPK   66 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSH--------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHH
Confidence            47888899999999999999887654        677788899999999999999999999999997     322  356


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH-HHHHHHHHHHhcCCCC
Q 006812          454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV-FAFAKDIMDVSLGPHH  532 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~  532 (630)
                      ++..+|.+|...|++++|+.+|++++++        +|....++.++|.+|...|++++|... +++++++        +
T Consensus        67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~  130 (150)
T 4ga2_A           67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F  130 (150)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence            8999999999999999999999999984        466677999999999999999987766 5899985        3


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 006812          533 ADSIEACQNLSKAYSSMGS  551 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~  551 (630)
                      |+...++...+.++...|+
T Consensus       131 P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHTCCC
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            4444678888999988885

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.64  E-value=1e-14  Score=126.63  Aligned_cols=172  Identities=19%  Similarity=0.176  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812          246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG  325 (630)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  325 (630)
                      ......+..+|.++...|++++|+..+++++...+        ....++..+|.++...|++++|+.++++++..     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----   71 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA--------FDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----   71 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence            34467889999999999999999999998876422        23567889999999999999999999999887     


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812          326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  405 (630)
                       .|....++..+|.++...|++++|+.++++++...+.+    ..++..+|.++...|++++|..++++++...      
T Consensus        72 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------  140 (186)
T 3as5_A           72 -APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLR------  140 (186)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             -CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------
Confidence             56667889999999999999999999999999875544    4588999999999999999999999998764      


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812          406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK  443 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  443 (630)
                        |....++..+|.++...|++++|..++++++.+.+.
T Consensus       141 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          141 --PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             --ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence              334578899999999999999999999999988654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.63  E-value=7.7e-15  Score=142.48  Aligned_cols=122  Identities=13%  Similarity=0.151  Sum_probs=116.3

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 006812          422 ESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL  500 (630)
Q Consensus       422 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  500 (630)
                      ...|++++|+.++++++++.++..+++|+. +.++.+||.+|..+|+|++|+.++++++++.++.+|++||.++..+++|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            356899999999999999999999999998 6778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812          501 GAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS  543 (630)
Q Consensus       501 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  543 (630)
                      |.+|..+|++++|+.+|++|+++....+|++||.+.++..+|.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999999999999999999998887764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.63  E-value=2.2e-14  Score=128.63  Aligned_cols=176  Identities=13%  Similarity=0.057  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      ..++.+|..+...|++++|+..|+++++..     +..+....++..+|.+|...|++++|+..|+++++..+     ++
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-----~~   74 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----TH   74 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CC
Confidence            567789999999999999999999998653     44455568899999999999999999999999998765     34


Q ss_pred             HHHHHHHHHHHHHHhc------------------cccHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHH
Q 006812          288 VEVAHDRRLLGVIYSG------------------LEEHQKALEQNELSQKVLKTWGLSSELL--------------RAEI  335 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~  335 (630)
                      +....+++.+|.++..                  .|++++|+..|+++++..   +..+...              ....
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~~~~~~~~~~~  151 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYEY  151 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHH
Confidence            4555677888888775                  689999999999877642   1222111              2225


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812          336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG  397 (630)
Q Consensus       336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  397 (630)
                      .+|.+|...|++++|+..|+++++..+.++ ....++..+|.++..+|++++|+..++.+..
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQ-ATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHCcCCC-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            789999999999999999999999877653 3356899999999999999999999987654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=1.6e-15  Score=125.82  Aligned_cols=147  Identities=12%  Similarity=0.142  Sum_probs=123.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 006812          212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA  291 (630)
Q Consensus       212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  291 (630)
                      .||.++...|++++|+..+++++        +..|.....++.+|.+|...|++++|+.+|++++++.+        ...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~--------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGST--------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------RDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHS--------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhc--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCH
Confidence            47889999999999999999987        45566678899999999999999999999999999744        335


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhhhcchHHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINT-LKGVVRQTEKESETRAL  370 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~~~~~~~~~~  370 (630)
                      .++..+|.+|...|++++|+.+|++++++      +|....++.++|.+|...|++++|... ++++++..+.++    .
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~----~  135 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP----A  135 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH----H
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH----H
Confidence            78899999999999999999999999998      788899999999999999999887765 589999877654    3


Q ss_pred             HHHHHHHHHHhhcc
Q 006812          371 VFISMGKALCNQEK  384 (630)
Q Consensus       371 ~~~~la~~~~~~~~  384 (630)
                      ++...+.++...|+
T Consensus       136 ~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          136 VYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCc
Confidence            67778888877764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.63  E-value=5.7e-14  Score=125.89  Aligned_cols=175  Identities=11%  Similarity=0.020  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      .++.+|..+...|++++|+..|++++....     ..+....++..+|.+|...|++++|+..|+++++..     +.++
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~   75 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCC
Confidence            555666666666666666666666655431     112334566666777777777777777776666642     2222


Q ss_pred             h-hHHHHHHHHHHHH------------------cCChhhHHHHHHHHHHHHHHhcCCCCccHHHH--------------H
Q 006812          451 E-GSVSARIGWLLLL------------------TGKVPQAIPYLESAAERLKESFGPKHFGVGYI--------------Y  497 (630)
Q Consensus       451 ~-~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~  497 (630)
                      . ..+++.+|.++..                  .|++++|+..|+++++.     .|+++....+              .
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~~  150 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKYE  150 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHHH
Confidence            2 2345566666554                  68999999999999883     2344433222              2


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          498 NNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       498 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ..+|.+|...|++++|+..|+++++..     |+++....++..+|.+|..+|++++|++.++++...
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            578999999999999999999999864     356667789999999999999999999999877643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.61  E-value=3.7e-14  Score=125.23  Aligned_cols=165  Identities=10%  Similarity=0.039  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH----------------HHHHHhccccHHHHHH
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRL----------------LGVIYSGLEEHQKALE  312 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~  312 (630)
                      +..+...|..+...|++++|+.+|++++.+.+        ....++..                +|.+|...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI--------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            35577789999999999999999999998644        34455666                9999999999999999


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccH--HHHHH
Q 006812          313 QNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKF--ADAKR  390 (630)
Q Consensus       313 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~--~~A~~  390 (630)
                      .|++++++      .|....++..+|.++...|++++|+..|+++++..+.+    ..++..+|.+|...|+.  ..+..
T Consensus        76 ~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           76 FYKELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN----LAANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             HHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999998      78889999999999999999999999999999976655    44899999999877654  34455


Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      .+.+++.       +.  ....+++.+|.++...|++++|+.+|++++++
T Consensus       146 ~~~~~~~-------~~--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          146 DYKKLSS-------PT--KMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHC---C-------CC--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHhC-------CC--chhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            5554321       11  23346778899999999999999999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.61  E-value=4.4e-15  Score=155.81  Aligned_cols=201  Identities=12%  Similarity=-0.055  Sum_probs=163.6

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812          218 TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL  297 (630)
Q Consensus       218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  297 (630)
                      ...|++++|+..++++++..-......+|....++..+|.++...|++++|+..|+++++..+.        ...+++++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--------RWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--------CHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--------hHHHHHHH
Confidence            7789999999999998822111111334555788999999999999999999999999997653        25778899


Q ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812          298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK  377 (630)
Q Consensus       298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~  377 (630)
                      |.++...|++++|+..|++++++      +|....++.++|.++...|++++ +..|+++++..+.+    ..+++++|.
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~----~~a~~~lg~  542 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV----ISAAFGLAR  542 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC----HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch----HHHHHHHHH
Confidence            99999999999999999999998      77788999999999999999999 99999999976554    448999999


Q ss_pred             HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhCC
Q 006812          378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA-ISLLKRTLALLEKLP  445 (630)
Q Consensus       378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~  445 (630)
                      ++...|++++|+..|++++++.        |....++.++|.++...++.+++ ...+++++.......
T Consensus       543 ~~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          543 ARSAEGDRVGAVRTLDEVPPTS--------RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHHTTCHHHHHHHHHTSCTTS--------TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHHcCCHHHHHHHHHhhcccC--------cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            9999999999999999987764        67788999999999887776666 677788887776664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.60  E-value=1.2e-14  Score=141.64  Aligned_cols=129  Identities=16%  Similarity=0.069  Sum_probs=122.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812          421 YESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN  499 (630)
Q Consensus       421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  499 (630)
                      +..+|++++|+..+++++++..+..++.|+. ..++.++|.+|..+|+|++|+.++++++++.+..+|++||.++..+++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            4578999999999999999999999999987 678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812          500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM  549 (630)
Q Consensus       500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  549 (630)
                      ||.+|..+|++++|+.+|++|+++....+|++||.+.+++.+|+.+...+
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887644

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.60  E-value=1.5e-14  Score=140.49  Aligned_cols=112  Identities=11%  Similarity=0.024  Sum_probs=108.5

Q ss_pred             HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812          464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS  543 (630)
Q Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  543 (630)
                      ..|+|++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHH-cCCCchh
Q 006812          544 KAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQD  575 (630)
Q Consensus       544 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~  575 (630)
                      .+|..+|++++|..+|++|++|+.. +|++++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            9999999999999999999999998 7888765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.59  E-value=4.6e-14  Score=124.60  Aligned_cols=168  Identities=15%  Similarity=0.057  Sum_probs=117.8

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHH----------------HHHHHHHc
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLE----------------LANVKTAM  220 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~  220 (630)
                      +..+...|..+...|++++|+..|++++.+                .|....+++.                +|.++...
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~   67 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----------------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN   67 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC
Confidence            345677899999999999999999999998                3333445555                88888888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 006812          221 GRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVI  300 (630)
Q Consensus       221 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  300 (630)
                      |++++|+..|++++++.        |....++..+|.++...|++++|+.+|++++++.+        ....++.++|.+
T Consensus        68 g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--------~~~~a~~~lg~~  131 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--------DNLAANIFLGNY  131 (208)
T ss_dssp             TCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHH
Confidence            88888888888887543        33356788888888888888888888888887643        234567778888


Q ss_pred             HhccccH--HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          301 YSGLEEH--QKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       301 ~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                      |...|+.  +.+...+.+++       ..+....++..+|.++...|++++|+..|+++++..+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          132 YYLTAEQEKKKLETDYKKLS-------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHhHHHHHHHHHHHHHHh-------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            7766543  33344443322       12223345666777777788888888888888776553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=2.2e-13  Score=120.44  Aligned_cols=176  Identities=13%  Similarity=0.073  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC---
Q 006812          349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN---  425 (630)
Q Consensus       349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---  425 (630)
                      +|+.+|+++.+.   ..   +.+++.+|.+|...+++++|+.+|+++.+.          ..+.+++++|.+|.. +   
T Consensus         4 eA~~~~~~aa~~---g~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~   66 (212)
T 3rjv_A            4 EPGSQYQQQAEA---GD---RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQ   66 (212)
T ss_dssp             CTTHHHHHHHHT---TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTS
T ss_pred             hHHHHHHHHHHC---CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCC
Confidence            566777777763   11   448889999999999999999999998653          234788899999988 7   


Q ss_pred             -CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 006812          426 -EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL  500 (630)
Q Consensus       426 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  500 (630)
                       ++++|+.+|+++.+.         ....++++||.+|..    .+++++|+.+|+++.+.     ++ ....+.++++|
T Consensus        67 ~~~~~A~~~~~~A~~~---------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~-~~~~~~a~~~L  131 (212)
T 3rjv_A           67 ADYPQARQLAEKAVEA---------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE-SDAAVDAQMLL  131 (212)
T ss_dssp             CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT-SHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC-CcchHHHHHHH
Confidence             899999999999662         134578999999988    89999999999999872     11 11357789999


Q ss_pred             HHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHH
Q 006812          501 GAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM-G-----SYTLAIEFQQRAIDA  565 (630)
Q Consensus       501 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~  565 (630)
                      |.+|..    .+++++|+.+|+++.+..      .++   .++++||.+|... |     ++++|+.+|+++++.
T Consensus       132 g~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~---~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          132 GLIYASGVHGPEDDVKASEYFKGSSSLS------RTG---YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHTSSSSCCHHHHHHHHHHHHHTS------CTT---HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHcC------CCH---HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            999999    889999999999998731      223   4889999999764 3     899999999999865

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.52  E-value=1.5e-13  Score=134.01  Aligned_cols=131  Identities=15%  Similarity=0.088  Sum_probs=122.9

Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHH
Q 006812          377 KALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVS  455 (630)
Q Consensus       377 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  455 (630)
                      .-+..+|++++|+..+++++++..+..+++++..+.++.++|.+|..+|+|++|+.++++++++.++..++.||. +..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            335578899999999999999999999999999999999999999999999999999999999999999999998 5677


Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL  507 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  507 (630)
                      ++||.+|..+|++++|+.+|++|+++.+..+|++||.+..++.+|+.+...+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.52  E-value=1.9e-13  Score=109.14  Aligned_cols=116  Identities=11%  Similarity=0.081  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      |..+..+.++|..|...|++++|+..|++++++     .+.  ...++.++|.+|..+|++++|+..|++++++      
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------   76 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRL------   76 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh------
Confidence            788999999999999999999999999999987     222  3568899999999999999999999999984      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812          488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY  546 (630)
Q Consensus       488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  546 (630)
                        +|....++.++|.++..+|++++|+..|++++++        +|+...++..|+.++
T Consensus        77 --~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           77 --DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred             --hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence              3566779999999999999999999999999995        355557777777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.51  E-value=3.7e-13  Score=107.52  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=102.2

Q ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      -+|..+..+.++|..|+..|+|++|+..|++++++.+        ....++.++|.+|..+|++++|+..+++++++   
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---   76 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--------ENAILYSNRAACLTKLMEFQRALDDCDTCIRL---   76 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence            4578899999999999999999999999999998644        33577889999999999999999999999998   


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKA  378 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~  378 (630)
                         +|....++..+|.++..+|++++|+..|++++++.+.+..    ++..++.+
T Consensus        77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~----a~~~l~~~  124 (126)
T 4gco_A           77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE----AREGVRNC  124 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHH
T ss_pred             ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH----HHHHHHHh
Confidence               7788899999999999999999999999999998766543    55555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.51  E-value=1.1e-12  Score=116.01  Aligned_cols=176  Identities=13%  Similarity=0.084  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhc----c
Q 006812          309 KALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE----K  384 (630)
Q Consensus       309 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~----~  384 (630)
                      +|+.+|+++.+.        ....++..+|.+|...+++++|+.+|+++.+..      .+.+++.+|.+|.. +    +
T Consensus         4 eA~~~~~~aa~~--------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~   68 (212)
T 3rjv_A            4 EPGSQYQQQAEA--------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQAD   68 (212)
T ss_dssp             CTTHHHHHHHHT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCC
T ss_pred             hHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCC
Confidence            466677766652        457788999999999999999999999998742      14588999999998 7    8


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGW  460 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  460 (630)
                      +++|+.+|+++.+.          ....+++++|.+|..    .+++++|+.+|+++.+.     ++......++++||.
T Consensus        69 ~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~~~~~a~~~Lg~  133 (212)
T 3rjv_A           69 YPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SESDAAVDAQMLLGL  133 (212)
T ss_dssp             HHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CCCcchHHHHHHHHH
Confidence            99999999998542          345788999999988    88999999999999863     211012568899999


Q ss_pred             HHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHH
Q 006812          461 LLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL-D-----RPQSAAQVFAFAKDI  523 (630)
Q Consensus       461 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~  523 (630)
                      +|..    .+++++|+.+|+++++.         +....++++||.+|... |     ++++|+.+|+++.+.
T Consensus       134 ~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          134 IYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            9999    88999999999999872         22234789999999864 3     899999999999885

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.50  E-value=1.2e-13  Score=118.47  Aligned_cols=164  Identities=15%  Similarity=0.067  Sum_probs=133.2

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812          293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF  372 (630)
Q Consensus       293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  372 (630)
                      .+..+|..+...|++++|+..|+++++.      .|....++..+|.++...|++++|+..+++++...+ ++.    .+
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~----~~   76 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDE------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS----YK   76 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHH------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH----HH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH----HH
Confidence            4667899999999999999999998886      678889999999999999999999999999987665 321    23


Q ss_pred             HHHHHHH-HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812          373 ISMGKAL-CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE  451 (630)
Q Consensus       373 ~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  451 (630)
                      ..++.+. ...++..+|+..+++++...        |....++..+|.++...|++++|+..|++++..     .+....
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~  143 (176)
T 2r5s_A           77 SLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKV-----NLGAQD  143 (176)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTTTT
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CcccCh
Confidence            3334332 22334446788999988764        556689999999999999999999999999875     222333


Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ..++..+|.++...|+.++|+..|++++.
T Consensus       144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          144 GEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            45889999999999999999999999886

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.50  E-value=1.4e-13  Score=117.91  Aligned_cols=163  Identities=15%  Similarity=0.076  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      .+..+|..+...|++++|+..++++++..        |....++..+|.++...|++++|+..+++++..     .+ .+
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~~   73 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-DN   73 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-CH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-Ch
Confidence            56788899999999999999999998876        667789999999999999999999999998764     12 22


Q ss_pred             hhHHHHHHHHHH-HHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812          451 EGSVSARIGWLL-LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       451 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  529 (630)
                        .....++.+. ...++..+|+..+++++++        +|....++..+|.++...|++++|+..|++++.+      
T Consensus        74 --~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------  137 (176)
T 2r5s_A           74 --SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV------  137 (176)
T ss_dssp             --HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------
T ss_pred             --HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------
Confidence              2333344332 2334556689999999983        4666779999999999999999999999999883      


Q ss_pred             CCCHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          530 PHHADS--IEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       530 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                        +|..  ..++..++.++...|+.++|...|++++..
T Consensus       138 --~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 --NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             --CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             --CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence              3432  358999999999999999999999999864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=1.1e-12  Score=105.04  Aligned_cols=109  Identities=18%  Similarity=0.144  Sum_probs=96.5

Q ss_pred             hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      ++.+.++..+|..++..|+|++|+.+|++++.+                .|....+++++|.+|..+|++++|+..|+++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----------------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----------------DPSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            357788999999999999999999999999998                3344578889999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812          234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH  279 (630)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  279 (630)
                      +++.+... ...+..+.++..+|.++...|++++|+.+|++++...
T Consensus        69 l~~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           69 VEVGRETR-ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHhCcccc-hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99887642 4556778899999999999999999999999999853

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.49  E-value=2.3e-10  Score=117.65  Aligned_cols=230  Identities=10%  Similarity=0.019  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH
Q 006812          310 ALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI-NTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA  388 (630)
Q Consensus       310 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  388 (630)
                      ....|++++..      .|.....+...+......|+.++|. ..|++++...+..    ...+..++.+....|++++|
T Consensus       328 v~~~Ye~aL~~------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~a  397 (679)
T 4e6h_A          328 MTYVYMQAAQH------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEI  397 (679)
T ss_dssp             HHHHHHHHHHH------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHH------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHH
Confidence            34455555554      4556778888899999999999997 9999999866544    34788889999999999999


Q ss_pred             HHHHHHHHHHHHhhc------CCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812          389 KRCLEIACGILDKKE------TIS--------PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV  454 (630)
Q Consensus       389 ~~~~~~a~~~~~~~~------~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  454 (630)
                      ...|++++.......      .+.        +.....+|...+.+..+.|+.+.|...|.+|++...      .....+
T Consensus       398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~------~~~~~l  471 (679)
T 4e6h_A          398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK------LVTPDI  471 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG------GSCTHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCChHH
Confidence            999999998642110      010        013456788888888899999999999999987411      111345


Q ss_pred             HHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812          455 SARIGWLLLLTG-KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA  533 (630)
Q Consensus       455 ~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  533 (630)
                      +...+.+....+ +++.|..+|+.+++.+        |.....+...+......|+.+.|...|++++....     ...
T Consensus       472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~-----~~~  538 (679)
T 4e6h_A          472 YLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS-----DSH  538 (679)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS-----STT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-----CHH
Confidence            666677766665 4899999999999853        33344556777788889999999999999987321     111


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      .....+......-...|+.+.+..+++++.+.++.
T Consensus       539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            45567888888889999999999999999877653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.49  E-value=3.5e-13  Score=125.48  Aligned_cols=166  Identities=11%  Similarity=0.056  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                      ...+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..     .+ 
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p-  182 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS--------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQ-  182 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GC-
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hc-
Confidence            4577889999999999999999999998875        456688999999999999999999999888664     11 


Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                       .........+..+...++.++|+..|++++..        +|+...+++++|.++...|++++|+..|++++..     
T Consensus       183 -~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-----  248 (287)
T 3qou_A          183 -DTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX-----  248 (287)
T ss_dssp             -SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             -chHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----
Confidence             12234466667788888999999999999883        4677778999999999999999999999999984     


Q ss_pred             CCCCHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          529 GPHHADS--IEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       529 ~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                         +|+.  ..++.+++.++...|+.++|...|++++..
T Consensus       249 ---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          249 ---DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             ---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ---ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence               3443  578999999999999999999999998864

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.48  E-value=1.9e-11  Score=112.67  Aligned_cols=238  Identities=8%  Similarity=-0.081  Sum_probs=190.0

Q ss_pred             hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812          262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE--EHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN  339 (630)
Q Consensus       262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  339 (630)
                      ....++|+..+.+++.+.+        ....+++..+.+....|  ++++++.+++.++..      +|....++...+.
T Consensus        46 ~e~s~~aL~~t~~~L~~nP--------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------nPk~y~aW~~R~~  111 (306)
T 3dra_A           46 EEYSERALHITELGINELA--------SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------NEKNYQIWNYRQL  111 (306)
T ss_dssp             TCCSHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------CTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCc--------HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------CcccHHHHHHHHH
Confidence            3444689999999998744        34577888999999999  999999999999887      7778888888888


Q ss_pred             HH----HHc---CCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHhhcCCCcHHH
Q 006812          340 MQ----IAL---GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFA--DAKRCLEIACGILDKKETISPEEV  410 (630)
Q Consensus       340 ~~----~~~---g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~~~  410 (630)
                      ++    ...   +++++++..+.++++..+++    ..+|...+.+....|.++  +++.+++++++..        +..
T Consensus       112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn----y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--------~~N  179 (306)
T 3dra_A          112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKN----HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--------LKN  179 (306)
T ss_dssp             HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--------TTC
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--------CCC
Confidence            88    666   78999999999999976666    448999999999999998  9999999988764        455


Q ss_pred             HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh-HHHHHHHHHHHHH
Q 006812          411 ADAYSEISMQYESMNE------FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ-AIPYLESAAERLK  483 (630)
Q Consensus       411 ~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~  483 (630)
                      ..+|...+.+....+.      ++++++++.+++.+     .  +.+..+|+.++.++...|+..+ ...+..+++++  
T Consensus       180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~--  250 (306)
T 3dra_A          180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-----C--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL--  250 (306)
T ss_dssp             HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----C--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG--
T ss_pred             HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-----C--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc--
Confidence            5789999999998887      99999999999986     2  2235688999999999998655 44466655542  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812          484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK  544 (630)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  544 (630)
                         +...+....++..++.+|...|+.++|+++|+.+.+.       .+|.....+...+.
T Consensus       251 ---~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~yW~~~~~  301 (306)
T 3dra_A          251 ---EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNFWDYQIS  301 (306)
T ss_dssp             ---GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHHHHHHHH
T ss_pred             ---cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHHHHHHHh
Confidence               1124666778999999999999999999999998751       24555555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.47  E-value=8.6e-12  Score=114.96  Aligned_cols=235  Identities=14%  Similarity=0.070  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcchHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG--KFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                      .+...+-.+.......++|+..+.+++.+      +|....+++..+.+....|  .+++++..+..++...+++..   
T Consensus        34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---  104 (306)
T 3dra_A           34 QIMGLLLALMKAEEYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---  104 (306)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---
Confidence            33333333444445557899999999998      8999999999999999999  999999999999997776644   


Q ss_pred             HHHHHHHHHH----Hhh---ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHH
Q 006812          370 LVFISMGKAL----CNQ---EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE--TAISLLKRTLAL  440 (630)
Q Consensus       370 ~~~~~la~~~----~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~  440 (630)
                       +|+..+.++    ...   +++++++.+++++++..        |....+|...+.+....|.++  ++++++.++++.
T Consensus       105 -aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~  175 (306)
T 3dra_A          105 -IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT  175 (306)
T ss_dssp             -HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence             788778777    666   78999999999998865        455689999999999999998  999999999985


Q ss_pred             HHhCCCCCCchhHHHHHHHHHHHHcCC------hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH-H
Q 006812          441 LEKLPQAQHSEGSVSARIGWLLLLTGK------VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS-A  513 (630)
Q Consensus       441 ~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A  513 (630)
                           +  ..+..+|...+.+....|+      ++++++++.+++.        .+|....+++.++.++...|+..+ .
T Consensus       176 -----d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--------~~p~n~SaW~y~~~ll~~~~~~~~~~  240 (306)
T 3dra_A          176 -----D--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--------KCPQNPSTWNYLLGIHERFDRSITQL  240 (306)
T ss_dssp             -----C--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--------HCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred             -----C--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--------hCCCCccHHHHHHHHHHhcCCChHHH
Confidence                 2  2235688999999998887      8999999999998        357777799999999999998655 4


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          514 AQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       514 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      ..++.+++.+.     ..++....++..++.+|.+.|+.++|+++|+.+.+
T Consensus       241 ~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          241 EEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            44666555421     11244447899999999999999999999999764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.47  E-value=1.2e-12  Score=121.76  Aligned_cols=168  Identities=15%  Similarity=0.042  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL  370 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  370 (630)
                      ...+..+|..+...|++++|+..|++++..      .|+...++..+|.++...|++++|+..+++++...+.    ...
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~----~~~  186 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQL------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD----TRY  186 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS----HHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc----hHH
Confidence            456778999999999999999999999987      7888899999999999999999999999998876542    234


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      .....+..+...++.++|+..+++++...        |+...++.++|.++...|++++|+..|++++..     .+...
T Consensus       187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-----~p~~~  253 (287)
T 3qou_A          187 QGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRX-----DLTAA  253 (287)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTGG
T ss_pred             HHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----ccccc
Confidence            56666777888899999999999998875        566789999999999999999999999999997     33444


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAER  481 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (630)
                      ...++..++.++...|+.++|...|++++..
T Consensus       254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          254 DGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            4678999999999999999999999998863

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.46  E-value=6.2e-13  Score=109.28  Aligned_cols=117  Identities=14%  Similarity=0.046  Sum_probs=97.8

Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                      +....+++.+|.++...|++++|+.+|++++.+        +|....++.++|.+|..+|++++|+.+|++++.+.    
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----  100 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----  100 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----
Confidence            334678899999999999999999999999984        46677799999999999999999999999999953    


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812          529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ  586 (630)
Q Consensus       529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~  586 (630)
                          |+...+++++|.+|..+|++++|+..|++++++.    ++ ....++|..+.+.
T Consensus       101 ----P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~----~~-~~~~~~A~~ll~~  149 (151)
T 3gyz_A          101 ----KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS----ND-EKLKIKAQSYLDA  149 (151)
T ss_dssp             ----SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC-HHHHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC-HHHHHHHHHHHHh
Confidence                4455799999999999999999999999999874    22 2344555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.45  E-value=4.2e-12  Score=101.57  Aligned_cols=108  Identities=15%  Similarity=0.122  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      ++.+.++.++|..+...|++++|+.+|++++++     .+.  ...++.++|.+|..+|++++|+..+++++++.... .
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~   76 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPS--NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-R   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-c
Confidence            467788999999999999999999999999997     222  35688999999999999999999999999987654 2


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      ..++..+.++.++|.++..+|++++|+++|++++..
T Consensus        77 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           77 ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345667789999999999999999999999999985

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.44  E-value=9.9e-13  Score=117.92  Aligned_cols=202  Identities=14%  Similarity=0.041  Sum_probs=164.1

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHhhhc-
Q 006812          293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA-------ANMQIALGKFEEAINTLKGVVRQTEKE-  364 (630)
Q Consensus       293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~~~~-  364 (630)
                      .++..|.-+ ..+++..|...|.++..+      +|..+.++..+       +.++...++..+++..+++.+.+.+.. 
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l   81 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNY------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL   81 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHh------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence            344555555 589999999999999998      89999999999       899999999999999999988855442 


Q ss_pred             ----c------------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812          365 ----S------------ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE  428 (630)
Q Consensus       365 ----~------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  428 (630)
                          .            .....+...++.++...|++++|.+.|+..+..        .|... ..+.+|.++...++++
T Consensus        82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~  152 (282)
T 4f3v_A           82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWT  152 (282)
T ss_dssp             CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHH
T ss_pred             hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHH
Confidence                1            012456777899999999999999998876542        14555 8899999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHH
Q 006812          429 TAISLLKRTLALLEKLPQAQHSE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG-VGYIYNNLGAAYL  505 (630)
Q Consensus       429 ~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~  505 (630)
                      +|+.+|+++...      . ++.  ..+++.+|.++..+|++++|+.+|++++.      ++..|. ...+.+++|.++.
T Consensus       153 dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~  219 (282)
T 4f3v_A          153 DVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARR  219 (282)
T ss_dssp             HHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHH
Confidence            999999866431      1 221  35789999999999999999999999974      222255 6778999999999


Q ss_pred             HcCChhHHHHHHHHHHHH
Q 006812          506 ELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       506 ~~g~~~~A~~~~~~al~~  523 (630)
                      .+|+.++|...|++++..
T Consensus       220 ~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          220 SQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhc
Confidence            999999999999999984

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.44  E-value=2.8e-13  Score=129.04  Aligned_cols=164  Identities=14%  Similarity=0.067  Sum_probs=133.9

Q ss_pred             hhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC--------chh
Q 006812          381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH--------SEG  452 (630)
Q Consensus       381 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~  452 (630)
                      .++++++|+..+++++...        |..+.++..+|.++...|++++|+..|++++.+.+.......        ...
T Consensus       125 ~L~~~~~A~~~~~~a~~~~--------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~  196 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEK--------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL  196 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHH--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence            3566777777777766554        677889999999999999999999999999998543311000        014


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      .++.++|.+|..+|++++|+.+|++++++        .|....+++++|.+|..+|++++|+..|++++++        +
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~  260 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------Y  260 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------C
Confidence            68899999999999999999999999994        3566789999999999999999999999999995        3


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHH
Q 006812          533 ADSIEACQNLSKAYSSMGSYTLA-IEFQQRAIDAWES  568 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~  568 (630)
                      |....++..++.++...|++++| ...|++++..+..
T Consensus       261 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          261 PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45557899999999999999999 5678887765443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.43  E-value=1.2e-12  Score=135.33  Aligned_cols=156  Identities=15%  Similarity=0.058  Sum_probs=120.3

Q ss_pred             hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH
Q 006812          382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL  461 (630)
Q Consensus       382 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  461 (630)
                      .|++++|+..++++++..        |....++..+|.++...|++++|+.+|++++++     .+  ....++..+|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p--~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HP--GHPEAVARLGRV   66 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----ST--TCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC--CCHHHHHHHHHH
Confidence            478899999999988765        455688999999999999999999999999985     22  235688999999


Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006812          462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQN  541 (630)
Q Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  541 (630)
                      +..+|++++|+.+|++++++        +|....++.++|.+|...|++++|+.+|++++++        +|+...++.+
T Consensus        67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~  130 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ  130 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            99999999999999999984        3556778999999999999999999999999985        3455578999


Q ss_pred             HHHHHHhc---CCHHHHHHHHHHHHHHHHH
Q 006812          542 LSKAYSSM---GSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       542 la~~~~~~---g~~~~A~~~~~~al~~~~~  568 (630)
                      +|.++...   |++++|.+.++++++..+.
T Consensus       131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            99999999   9999999999999986543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.41  E-value=3.1e-12  Score=114.72  Aligned_cols=207  Identities=13%  Similarity=-0.004  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHH-------HHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812          333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISM-------GKALCNQEKFADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  405 (630)
                      ..+..|..+ ..+++..|...|.+++...+..    +.+|..+       +.++...++..+++..+.+++.+.......
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~----~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNYDESA----CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh----hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence            344455555 5899999999999999965544    5689988       899999999999999888887755433221


Q ss_pred             CcH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHH
Q 006812          406 SPE-------------EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAI  472 (630)
Q Consensus       406 ~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (630)
                      ...             .-..+...++.++...|++++|.+.|...+.       ..+... ..+.+|.++.+.|+|++|+
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-------~~p~~~-~~~~~a~l~~~~~r~~dA~  155 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-------AGSEHL-VAWMKAVVYGAAERWTDVI  155 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-------TTCHHH-HHHHHHHHHHHTTCHHHHH
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCchH-HHHHHHHHHHHcCCHHHHH
Confidence            110             1235566788999999999999999877654       122234 7899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhcC
Q 006812          473 PYLESAAERLKESFGPKHFG-VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD-SIEACQNLSKAYSSMG  550 (630)
Q Consensus       473 ~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g  550 (630)
                      .+|+++...       .++. ...+++++|.++..+|++++|+.+|+++..      ++..|. ...+.+.+|.++..+|
T Consensus       156 ~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lG  222 (282)
T 4f3v_A          156 DQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQG  222 (282)
T ss_dssp             HHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcC
Confidence            999866541       1232 245889999999999999999999999974      333254 6679999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 006812          551 SYTLAIEFQQRAIDA  565 (630)
Q Consensus       551 ~~~~A~~~~~~al~~  565 (630)
                      +.++|...|++++..
T Consensus       223 r~deA~~~l~~a~a~  237 (282)
T 4f3v_A          223 NESAAVALLEWLQTT  237 (282)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999999976

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.40  E-value=1.5e-11  Score=99.18  Aligned_cols=119  Identities=13%  Similarity=-0.019  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG----PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                      +..+.++|..++..|+|++|+..|++++++......    ...|..+.+|.++|.++..+|++++|+..|+++++++.+.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            346789999999999999999999999997543100    0012245599999999999999999999999999986555


Q ss_pred             cCCCCHHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812          528 LGPHHADSIEAC----QNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       528 ~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                      . +.+|+...+|    +++|.++..+|++++|+..|++++++-+....
T Consensus        91 ~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           91 G-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             C-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             c-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            3 4567888889    99999999999999999999999999887443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.40  E-value=6.3e-13  Score=109.23  Aligned_cols=103  Identities=13%  Similarity=0.085  Sum_probs=91.8

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                      .|....+++.+|.++...|++++|+.+|++++.+     .+.  ...+|.++|.++...|++++|+..|++++.+     
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence            3688899999999999999999999999999997     332  3468999999999999999999999999994     


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                         .|....+++++|.+|..+|++++|+..|++++++.
T Consensus       100 ---~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          100 ---GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             ---SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence               34555689999999999999999999999999964

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.40  E-value=3.1e-12  Score=132.17  Aligned_cols=158  Identities=16%  Similarity=0.055  Sum_probs=120.7

Q ss_pred             ccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHH
Q 006812          170 FKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELG  249 (630)
Q Consensus       170 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  249 (630)
                      .|++++|+..|+++++.                .|....+++.+|.++...|++++|+..|++++++        .|...
T Consensus         2 ~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~   57 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH----------------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHP   57 (568)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCH
T ss_pred             CccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            47889999999999887                2333567889999999999999999999999854        34446


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      .++..+|.+|...|++++|+.+|++++++.+        ....++.++|.+|...|++++|+.++++++++      .|.
T Consensus        58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~  123 (568)
T 2vsy_A           58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAP--------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPE  123 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence            7899999999999999999999999998643        23567889999999999999999999999987      667


Q ss_pred             HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhhcc
Q 006812          330 LLRAEIDAANMQIAL---GKFEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       330 ~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~~~~~  365 (630)
                      ...++.++|.++...   |++++|+..++++++..+...
T Consensus       124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence            788899999999999   999999999999999876653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.39  E-value=1.1e-12  Score=124.98  Aligned_cols=161  Identities=14%  Similarity=0.059  Sum_probs=109.5

Q ss_pred             hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc------
Q 006812          169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE------  242 (630)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------  242 (630)
                      .++++++|+..+++++..                .+..+..++.+|.++...|++++|+..|++++++.+....      
T Consensus       125 ~L~~~~~A~~~~~~a~~~----------------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~  188 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE----------------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA  188 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH
T ss_pred             EEeecccccchhcCCHHH----------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHH
Confidence            677888888888887765                4556788899999999999999999999999987643210      


Q ss_pred             -cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812          243 -EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL  321 (630)
Q Consensus       243 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  321 (630)
                       ...+....++.++|.+|...|++++|+.+|++++++.+        ....+++++|.+|..+|++++|+.+|++++++ 
T Consensus       189 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-  259 (336)
T 1p5q_A          189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--------NNEKGLSRRGEAHLAVNDFELARADFQKVLQL-  259 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence             01123356667777777777777777777777776533        22455666677777777777777777666665 


Q ss_pred             HHcCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 006812          322 KTWGLSSELLRAEIDAANMQIALGKFEEA-INTLKGVVR  359 (630)
Q Consensus       322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~  359 (630)
                           .|....++..++.++...|++++| ...|++++.
T Consensus       260 -----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          260 -----YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             -----CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 455555666666666666666666 334555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.38  E-value=4.8e-12  Score=112.42  Aligned_cols=155  Identities=12%  Similarity=0.067  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK  489 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (630)
                      ....++.+|.++...|++++|+..|++++.          +...++.++|.++...|++++|+.+|++++.+        
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD----------PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            345678899999999999999999998741          13468899999999999999999999999984        


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL--------GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR  561 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  561 (630)
                      .|....++.++|.++...|++++|+..|++++.+.....        ....|....++.++|.+|...|++++|..+|++
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            355677899999999999999999999999998543210        002345668999999999999999999999999


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHH
Q 006812          562 AIDAWESHGPSAQDELREARRLLE  585 (630)
Q Consensus       562 al~~~~~~~~~~~~~~~~A~~~~~  585 (630)
                      ++++.+.   ...+..++++..+.
T Consensus       147 al~~~p~---~~~~~~~~a~~~~~  167 (213)
T 1hh8_A          147 ATSMKSE---PRHSKIDKAMECVW  167 (213)
T ss_dssp             HHTTCCS---GGGGHHHHHHHHHH
T ss_pred             HHHcCcc---cccchHHHHHHHHH
Confidence            9876432   23345555555543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.37  E-value=1.8e-11  Score=99.55  Aligned_cols=131  Identities=26%  Similarity=0.385  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      .++..+|.++...|++++|+.++++++..     .+.  ...++..+|.++...|++++|+.++++++..        .|
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~   66 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP   66 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence            46788999999999999999999999875     222  2457889999999999999999999999874        24


Q ss_pred             cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|..++++++.+
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            445678899999999999999999999998842        333468899999999999999999999999875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.37  E-value=1.8e-11  Score=98.72  Aligned_cols=122  Identities=17%  Similarity=0.050  Sum_probs=99.0

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .+..+...|..++..|+|++|+..|++++.+.......    ...+..+..+.+|.++|.++..+|+|++|+..|+++++
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46677889999999999999999999999994431110    01122334456899999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          236 IKELILEEDSRELGVAN----RDLAEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                      ++.... +-+|+...+|    +++|.++...|++++|+..|++++++.+.-
T Consensus        86 l~n~~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           86 YFNRRG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhhccc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            854432 4456677888    999999999999999999999999998863

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.36  E-value=2.3e-11  Score=103.08  Aligned_cols=142  Identities=15%  Similarity=0.096  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP  488 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (630)
                      ..+..+..+|.++...|++++|+.+|++++.+.     +.  ...++..+|.++...|++++|+.++++++.+       
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-----PS--NAIYYGNRSLAYLRTECYGYALGDATRAIEL-------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            456788999999999999999999999999862     22  2568899999999999999999999999984       


Q ss_pred             CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                       .|....++..+|.++...|++++|+.+|++++.+.     +.++. ......++..+...|++++|+..+.++..++..
T Consensus        77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A           77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence             35556789999999999999999999999999853     23332 123355566688899999999999999888877


Q ss_pred             cCC
Q 006812          569 HGP  571 (630)
Q Consensus       569 ~~~  571 (630)
                      .+.
T Consensus       150 ~~~  152 (166)
T 1a17_A          150 LDI  152 (166)
T ss_dssp             CCC
T ss_pred             cch
Confidence            554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.35  E-value=3.1e-11  Score=96.73  Aligned_cols=122  Identities=11%  Similarity=-0.015  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhH
Q 006812          110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGR  189 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  189 (630)
                      ..+..+..+|..++..| ++++|+..|++++++.+          ..+.++..+|.++...|++++|+..|++++.+   
T Consensus         2 ~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---   67 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAP----------EDARGYSNRAAALAKLMSFPEAIADCNKAIEK---   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             chHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC----------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence            45678899999999999 99999999999998753          23578899999999999999999999999998   


Q ss_pred             hhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 006812          190 LEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV  260 (630)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  260 (630)
                                   .|....+++.+|.++...|++++|+..|++++++.+..  .+.|....+...++.+..
T Consensus        68 -------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           68 -------------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHH
T ss_pred             -------------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHH
Confidence                         23345778899999999999999999999999887554  333444556666665543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.34  E-value=1.7e-09  Score=111.31  Aligned_cols=406  Identities=8%  Similarity=-0.018  Sum_probs=248.1

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      ...+-+..|++.+...          |....++..+.......+.++.+...|++++..                .|...
T Consensus        47 ~~~d~i~~lE~~l~~n----------p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~----------------fP~~~  100 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQ----------PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR----------------FPLMA  100 (679)
T ss_dssp             CCSCHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCH
T ss_pred             CCHHHHHHHHHHHHHC----------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----------------CCCCH
Confidence            3455666777776543          234566777888888889999999999999998                34445


Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCH----HH----HHHHHHHHH
Q 006812          208 AVHLELANVKTAMGR---REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNF----KE----ALPFGLKAL  276 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al  276 (630)
                      ..|...+..-...|+   ++.+...|++++...     ..+|. ...+..........++.    ++    ....|+.|+
T Consensus       101 ~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~-----~~~~s-v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl  174 (679)
T 4e6h_A          101 NIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE-----LGNND-LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVV  174 (679)
T ss_dssp             HHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS-----SCCCC-HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc-----CCCCC-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            667777777788888   999999999998432     00022 22343333333333433    23    346777777


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHHH---------------HHHcCCCh-------
Q 006812          277 EIHKKGLGHNSVEVAHDRRLLGVI------YSGLEEHQKALEQNELSQKV---------------LKTWGLSS-------  328 (630)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~a~~~---------------~~~~~~~~-------  328 (630)
                      ..... ....+..+...|...-..      +..+++.+.+...|.+++.+               .+..+...       
T Consensus       175 ~~vG~-~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e  253 (679)
T 4e6h_A          175 DKCAI-FEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE  253 (679)
T ss_dssp             HHTTT-TCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHhCc-ccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence            64332 011233344333322111      11233455555555555431               00000000       


Q ss_pred             ----------------------------------------------hHHHHHHHHHHHHHHcC-------CHHHHHHHHH
Q 006812          329 ----------------------------------------------ELLRAEIDAANMQIALG-------KFEEAINTLK  355 (630)
Q Consensus       329 ----------------------------------------------~~~~~~~~la~~~~~~g-------~~~~A~~~~~  355 (630)
                                                                    .....+......-...+       ..+.....|+
T Consensus       254 ~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye  333 (679)
T 4e6h_A          254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM  333 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence                                                          00111111111111100       0223445666


Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812          356 GVVRQTEKESETRALVFISMGKALCNQEKFADAK-RCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL  434 (630)
Q Consensus       356 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  434 (630)
                      +++...+..    ...|...+..+...|+.++|. ..|++|+..+        |.....+...+.+....|++++|...|
T Consensus       334 ~aL~~~p~~----~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~~~e~aR~iy  401 (679)
T 4e6h_A          334 QAAQHVCFA----PEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNTKIPEIETTI  401 (679)
T ss_dssp             HHHHHTTTC----HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            666655443    448888899899999999997 9999998754        334467888999999999999999999


Q ss_pred             HHHHHHHHhCC------CCCC---------chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812          435 KRTLALLEKLP------QAQH---------SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN  499 (630)
Q Consensus       435 ~~al~~~~~~~------~~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  499 (630)
                      ++++.......      .+..         ....+|...+.+..+.|+.+.|...|.+|++..       .+....++..
T Consensus       402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~lyi~  474 (679)
T 4e6h_A          402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIYLE  474 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHHHH
T ss_pred             HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHHHH
Confidence            99998642110      0100         123467777888888999999999999998731       1112335556


Q ss_pred             HHHHHHHcC-ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---cC-----
Q 006812          500 LGAAYLELD-RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES---HG-----  570 (630)
Q Consensus       500 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~-----  570 (630)
                      .+.+....+ +++.|...|+++++.+.     +.+   ..+...+......|+.+.|..+|++++.....   .+     
T Consensus       475 ~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~  546 (679)
T 4e6h_A          475 NAYIEYHISKDTKTACKVLELGLKYFA-----TDG---EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK  546 (679)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCC-----Cch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            666666665 49999999999999652     334   44556677788889999999999998854321   00     


Q ss_pred             ----CCchhHHHHHHHHHHHHHHHhcC
Q 006812          571 ----PSAQDELREARRLLEQLKIKASG  593 (630)
Q Consensus       571 ----~~~~~~~~~A~~~~~~~~~~~~~  593 (630)
                          ....|+.+.+..+.+++.+....
T Consensus       547 ~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          547 VIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                01345667788888887766554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.33  E-value=4.8e-11  Score=101.02  Aligned_cols=138  Identities=12%  Similarity=0.075  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      .+..+..+|.++...|++++|+..+++++...+.+    ..++..+|.++...|++++|+.++++++.+.        |.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~   79 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD--------KK   79 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cc
Confidence            34556667777777777777777777777654433    3467777777777777777777777777653        33


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKE  484 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  484 (630)
                      ...++..+|.++...|++++|+.++++++.+     .+..+.......++..+...|++++|+..+.++..+...
T Consensus        80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A           80 YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence            4467777888888888888888888887776     222333333355555577778888888888877766544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.33  E-value=5.3e-11  Score=96.64  Aligned_cols=131  Identities=18%  Similarity=0.274  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV  371 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~  371 (630)
                      .++..+|.++...|++++|+.++++++..      .+....++..+|.++...|++++|+.++++++...+..    ..+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~   71 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEA   71 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHH
Confidence            35778899999999999999999998876      45567788899999999999999999999999865543    447


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      +..+|.++...|++++|..++++++...        |....++..+|.++...|++++|..++++++..
T Consensus        72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           72 WYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            8899999999999999999999998764        233467889999999999999999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.33  E-value=1.3e-11  Score=101.72  Aligned_cols=121  Identities=11%  Similarity=0.040  Sum_probs=98.3

Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP  530 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  530 (630)
                      ....++.+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+..|++++.+.      
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------   85 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD------   85 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            4668899999999999999999999999983        45667789999999999999999999999999852      


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 006812          531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLK  588 (630)
Q Consensus       531 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~  588 (630)
                        |+...+++++|.+|...|++++|+..|++++++.+.. +.......++..+++.+.
T Consensus        86 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~l~~l~  140 (148)
T 2vgx_A           86 --IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX-PEFXELSTRVSSMLEAIK  140 (148)
T ss_dssp             --TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHC-
T ss_pred             --CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-CcchHHHHHHHHHHHHHH
Confidence              4445789999999999999999999999999886532 222333445555555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.32  E-value=2.1e-11  Score=108.23  Aligned_cols=138  Identities=12%  Similarity=0.027  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812          208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS  287 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  287 (630)
                      ..++.+|.++...|++++|+..|++++        +.   ...++..+|.+|...|++++|+.+|++++.+.+       
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------   68 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-------   68 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------
Confidence            456789999999999999999999874        11   246889999999999999999999999998643       


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC----------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG----------LSSELLRAEIDAANMQIALGKFEEAINTLKGV  357 (630)
Q Consensus       288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  357 (630)
                       ....++.++|.++...|++++|+.+|+++++......          ..+....++.++|.++...|++++|+..++++
T Consensus        69 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           69 -HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence             2356788999999999999999999999888644332          33566788999999999999999999999999


Q ss_pred             HHHhhhc
Q 006812          358 VRQTEKE  364 (630)
Q Consensus       358 l~~~~~~  364 (630)
                      +...+..
T Consensus       148 l~~~p~~  154 (213)
T 1hh8_A          148 TSMKSEP  154 (213)
T ss_dssp             HTTCCSG
T ss_pred             HHcCccc
Confidence            8876544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.32  E-value=1.4e-11  Score=101.51  Aligned_cols=103  Identities=11%  Similarity=0.091  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG  487 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (630)
                      |.....++.+|.++...|++++|+..|++++.+     .+.  ...++..+|.++...|++++|+.+|++++.+      
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------   84 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------   84 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Ccc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            677889999999999999999999999999986     222  3468899999999999999999999999984      


Q ss_pred             CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                        .|....+++++|.+|...|++++|+.+|++++++..
T Consensus        85 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           85 --DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             --STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence              244556889999999999999999999999999763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.32  E-value=3.3e-11  Score=98.77  Aligned_cols=124  Identities=13%  Similarity=0.044  Sum_probs=101.8

Q ss_pred             chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812          450 SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  529 (630)
                      .....++.+|.++...|++++|+.+|++++..        +|....++..+|.++...|++++|+.+|++++.+      
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------   81 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM------   81 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            34667899999999999999999999999983        4666778999999999999999999999999985      


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812          530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK  590 (630)
Q Consensus       530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~  590 (630)
                        +|+...+++++|.+|...|++++|+..|++++++.+... .......++...++.+...
T Consensus        82 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A           82 --DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP-AHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             --CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHHHhc
Confidence              244457899999999999999999999999999876422 2334455666666665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.31  E-value=3.5e-12  Score=111.68  Aligned_cols=166  Identities=12%  Similarity=-0.006  Sum_probs=114.4

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc---
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS---  450 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---  450 (630)
                      ..+......|+++++.+.++......        +..+..+..+|..+...|++++|+.+|++++.+.+........   
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   80 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEK--------VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL   80 (198)
T ss_dssp             -------------CCCSGGGCCHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence            34445556667777766665443322        4566788899999999999999999999998864433211000   


Q ss_pred             ------hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          451 ------EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       451 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                            ...++.++|.++...|++++|+.++++++.+        .|....+++.+|.+|..+|++++|+.+|++++.+ 
T Consensus        81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-  151 (198)
T 2fbn_A           81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-
Confidence                  1267899999999999999999999999984        3556778999999999999999999999999985 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 006812          525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAI-EFQQRAI  563 (630)
Q Consensus       525 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al  563 (630)
                             +|....++..++.++...|+..++. ..|.+.+
T Consensus       152 -------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          152 -------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             -------STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   3445578899999999998888877 4444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=5.4e-11  Score=95.31  Aligned_cols=121  Identities=15%  Similarity=0.026  Sum_probs=97.6

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      ..+..+..+|..++..|++++|+..|++++.+                .|....+++.+|.++...|++++|+..|++++
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------APEDARGYSNRAAALAKLMSFPEAIADCNKAI   65 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45678899999999999999999999999998                23335788899999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIY  301 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  301 (630)
                      ++.        |....++..+|.++...|++++|+..|++++++.+...  +.|....++..++.+.
T Consensus        66 ~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           66 EKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHH
T ss_pred             HhC--------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHH
Confidence            653        33367899999999999999999999999999885432  2233334444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.30  E-value=2e-11  Score=113.12  Aligned_cols=195  Identities=9%  Similarity=-0.002  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      ....+..+|..+...|++++|+..|++++...+.+    ..++.++|.+|...|++++|+..+++++++.        |.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~   70 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELD--------GQ   70 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------TT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CC
Confidence            35567788888999999999999999988865543    4588899999999999999999999988753        45


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK  489 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (630)
                      ...+++.+|.++...|++++|+..|++++.+.+........  .++..+  .      ..++..+.....     ...+.
T Consensus        71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~--~~~~~~--~------~~~~~~~~~~~~-----~~~~~  135 (281)
T 2c2l_A           71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSAL--R------IAKKKRWNSIEE-----RRIHQ  135 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS--HHHHHH--H------HHHHHHHHHHHH-----TCCCC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH--HHHHHH--H------HHHHHHHHHHHH-----HHHhh
Confidence            56788999999999999999999999999987654321111  111111  1      111111111111     11122


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM-GSYTLAIEFQQRAID  564 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  564 (630)
                      .+.   +...++.++  .|++++|++.++++++        .+|........++.++... +.+++|.++|.++.+
T Consensus       136 ~~~---i~~~l~~l~--~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          136 ESE---LHSYLTRLI--AAERERELEECQRNHE--------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             CCH---HHHHHHHHH--HHHHHHHHTTTSGGGT--------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             hHH---HHHHHHHHH--HHHHHHHHHHHHhhhc--------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            333   334445543  6889999999988877        3344445566666666655 567777777777754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.27  E-value=1.5e-11  Score=113.96  Aligned_cols=194  Identities=12%  Similarity=0.084  Sum_probs=132.8

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      +..+..+|..+...|++++|+..|++++..                .|....+++++|.+|...|++++|+..+++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            567788999999999999999999999998                2333577889999999999999999999999843


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006812          237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL  316 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  316 (630)
                              +|....+++.+|.+|...|++++|+..|++++++.+.....-.... ...    ...      .++..+.. 
T Consensus        68 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~-~~~----~~~------~~~~~~~~-  127 (281)
T 2c2l_A           68 --------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI-PSA----LRI------AKKKRWNS-  127 (281)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH-HHH----HHH------HHHHHHHH-
T ss_pred             --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH-HHH----HHH------HHHHHHHH-
Confidence                    3445688999999999999999999999999998875311111111 111    111      11111111 


Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHH
Q 006812          317 SQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-EKFADAKRCLEIA  395 (630)
Q Consensus       317 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a  395 (630)
                         ....  ..+....+...++.++  .|++++|++.++++++..+.+    ......++.++... +.+++|...|.++
T Consensus       128 ---~~~~--~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          128 ---IEER--RIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDD----GHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             ---HHHT--CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH----HHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ---HHHH--HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence               1111  1122222333344443  689999999999888764432    23444555555554 6788888888876


Q ss_pred             HH
Q 006812          396 CG  397 (630)
Q Consensus       396 ~~  397 (630)
                      .+
T Consensus       197 ~~  198 (281)
T 2c2l_A          197 DE  198 (281)
T ss_dssp             SC
T ss_pred             hc
Confidence            54

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.26  E-value=1.5e-11  Score=107.52  Aligned_cols=160  Identities=11%  Similarity=0.035  Sum_probs=118.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC----
Q 006812          212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS----  287 (630)
Q Consensus       212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----  287 (630)
                      ..+......|.+++|.+.+....+        ..+..+..+..+|..+...|+|++|+.+|++++.+.+.......    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   80 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDE--------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL   80 (198)
T ss_dssp             -------------CCCSGGGCCHH--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHH--------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence            455666778888888887765442        33445788999999999999999999999999987654210000    


Q ss_pred             ----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          288 ----VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       288 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                          .....++.++|.++...|++++|+.++++++.+      .|....++..+|.+|...|++++|+..|++++...+.
T Consensus        81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A           81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence                012477889999999999999999999999987      6777889999999999999999999999999997665


Q ss_pred             cchHHHHHHHHHHHHHHhhccHHHHH
Q 006812          364 ESETRALVFISMGKALCNQEKFADAK  389 (630)
Q Consensus       364 ~~~~~~~~~~~la~~~~~~~~~~~A~  389 (630)
                      +    ..++..++.++...++..++.
T Consensus       155 ~----~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          155 N----LDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             C----HHHHHHHHHHHHHHHHHHC--
T ss_pred             c----HHHHHHHHHHHHHHHHHHHHH
Confidence            4    447888899888888877766

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.26  E-value=9.5e-11  Score=98.89  Aligned_cols=105  Identities=20%  Similarity=0.110  Sum_probs=93.2

Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                      ...+..+..+|.++...|++++|+.+|++++++        .|....++.++|.+|...|++++|+.+|++++.+     
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----   74 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----   74 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            344678899999999999999999999999984        3556779999999999999999999999999995     


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                         +|....+++++|.+|..+|++++|+.+|++++++....
T Consensus        75 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           75 ---DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence               35556899999999999999999999999999886543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.26  E-value=9.6e-12  Score=123.84  Aligned_cols=159  Identities=14%  Similarity=0.016  Sum_probs=125.1

Q ss_pred             hhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC--------Cchh
Q 006812          381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ--------HSEG  452 (630)
Q Consensus       381 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~  452 (630)
                      ..+++++|+..++.++...        +..+..+..+|..+...|++++|+..|++++.+........        ....
T Consensus       246 ~l~~~~~A~~~~~~~~~~~--------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~  317 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEK--------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL  317 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence            3455666666666655543        67788999999999999999999999999999865431100        0014


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      .++.++|.+|..+|++++|+.+|++++++        +|....+++++|.+|..+|++++|+..|+++++        .+
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--------l~  381 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--------VN  381 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------TC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hC
Confidence            68899999999999999999999999994        356678999999999999999999999999998        45


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 006812          533 ADSIEACQNLSKAYSSMGSYTLAIE-FQQRAI  563 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al  563 (630)
                      |....++..++.++...|++++|.. .|++++
T Consensus       382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          382 PQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777899999999999999988764 444444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.26  E-value=1.5e-10  Score=97.43  Aligned_cols=112  Identities=14%  Similarity=0.012  Sum_probs=95.1

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCC--------ChhHHHHHHHhhHHHhhccChHHHHHHH
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRP--------SLLVAMCLQVMGSANYSFKRFSDSLGYL  180 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~  180 (630)
                      ...+..+...|..++..| +|++|+..|.+++.+.+.....+.+        .+..+.++.++|.+|..+|++++|+..+
T Consensus         8 ~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQK-DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            345678899999999999 9999999999999997654322221        3456789999999999999999999999


Q ss_pred             HHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          181 SKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK  237 (630)
Q Consensus       181 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  237 (630)
                      ++++.+                .|....+++.+|.++..+|++++|+..|++++++.
T Consensus        87 ~~al~~----------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           87 SEVLKR----------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhc----------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            999998                34446788999999999999999999999999764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.23  E-value=7.8e-11  Score=95.38  Aligned_cols=123  Identities=11%  Similarity=0.034  Sum_probs=105.1

Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                      ..+.....+..+|.++...|++++|+.++++++..     .+  ....++..+|.++...|++++|+.++++++++    
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----   79 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQL----   79 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence            34567789999999999999999999999999874     21  23568899999999999999999999999984    


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 006812          486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS  551 (630)
Q Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  551 (630)
                          .|....++..+|.++...|++++|+.+|++++.+        .|....++..++.++...|+
T Consensus        80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                3455678999999999999999999999999984        35556788999999988764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.23  E-value=2.2e-10  Score=96.38  Aligned_cols=108  Identities=10%  Similarity=0.015  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006812          205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEED----------SRELGVANRDLAEAFVAVLNFKEALPFGLK  274 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  274 (630)
                      ..+..+..+|..+...|+|++|+..|.+++.+.......+          .|....++.++|.+|...|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            4467788999999999999999999999999866542111          344566777777777777777777777777


Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          275 ALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       275 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                      ++.+.+        ....+++.+|.+|...|++++|+..|++++.+
T Consensus        89 al~~~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           89 VLKREE--------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCC--------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            777532        23456667777777777777777777777666

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.22  E-value=4e-11  Score=119.34  Aligned_cols=155  Identities=14%  Similarity=0.088  Sum_probs=126.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCC-------CCHHHH
Q 006812          219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGH-------NSVEVA  291 (630)
Q Consensus       219 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~  291 (630)
                      ..+++++|+..|+.+++.        .|..+..+..+|.+++..|+|++|+..|++++++.+.....       ..+...
T Consensus       246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~  317 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL  317 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence            456677788777776643        35557889999999999999999999999999987742100       012346


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV  371 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~  371 (630)
                      .++.++|.+|..+|++++|+.++++++.+      .|....+++++|.+|..+|++++|+..|++++++.+.+    ..+
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~----~~a  387 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN----KAA  387 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHH
Confidence            78999999999999999999999999998      67788999999999999999999999999999976544    348


Q ss_pred             HHHHHHHHHhhccHHHHHHH
Q 006812          372 FISMGKALCNQEKFADAKRC  391 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~  391 (630)
                      +..++.++...+++++|...
T Consensus       388 ~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          388 RLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999888653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.22  E-value=2.7e-10  Score=92.12  Aligned_cols=123  Identities=12%  Similarity=0.108  Sum_probs=104.7

Q ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      ..+....++..+|.++...|++++|+.+|+++++..+        ....++..+|.++...|++++|+.++++++..   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---   79 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--------KDAKLYSNRAACYTKLLEFQLALKDCEECIQL---   79 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence            3456678899999999999999999999999987532        23577889999999999999999999999987   


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK  384 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~  384 (630)
                         .|....++..+|.++...|++++|+.++++++...+.+.    .++..++.++...|+
T Consensus        80 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ---EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK----EAADGYQRCMMAQYN  133 (133)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT----HHHHHHHHHHHHHTC
T ss_pred             ---CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhcC
Confidence               566788999999999999999999999999998765543    377888888877653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.22  E-value=1.8e-10  Score=92.88  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=105.3

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812          407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF  486 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (630)
                      .+.....+..+|.++...|++++|+.++++++..     .+.  ...++..+|.++...|++++|+.++++++..     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----   75 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICI-----   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----
Confidence            3567789999999999999999999999999986     222  2468899999999999999999999999984     


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH
Q 006812          487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSY  552 (630)
Q Consensus       487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  552 (630)
                         .|....++..+|.++...|++++|+.+|++++.+        .|....++..++.++...|++
T Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence               3445678999999999999999999999999985        244456889999999988875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.21  E-value=3.4e-10  Score=95.47  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc
Q 006812          245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW  324 (630)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  324 (630)
                      .+..+..+..+|.++...|++++|+.+|++++++.+        ....++.++|.+|...|++++|+.+|++++.+    
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--------ANPIYLSNRAAAYSASGQHEKAAEDAELATVV----   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence            455678899999999999999999999999998754        23577889999999999999999999999998    


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                        .|....++..+|.+|...|++++|+..|++++...+.+..
T Consensus        75 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           75 --DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             --CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence              6777899999999999999999999999999998877654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.21  E-value=3.9e-10  Score=91.80  Aligned_cols=106  Identities=25%  Similarity=0.238  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP  530 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  530 (630)
                      .+..+..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+..+++++.+       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            4568899999999999999999999999984        3555678999999999999999999999999985       


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       531 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                       +|....++..+|.++...|++++|+..|++++++.+.....
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  113 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN  113 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH
Confidence             34556799999999999999999999999999998874433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.21  E-value=6.8e-12  Score=125.34  Aligned_cols=196  Identities=13%  Similarity=0.058  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                      +..+..+|.++...|++++|+.++++++++.        |....++.++|.+|..+|++++|+.++++++++     .+ 
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p-   71 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DK-   71 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CT-
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC-
Confidence            4456677788888899999999999988874        455688899999999999999999999999885     22 


Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHcCChhHHHHHHH--------
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA--YLELDRPQSAAQVFA--------  518 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~--------  518 (630)
                       ....++.++|.+|..+|++++|+.+|++++++     .   |....++..++.+  +..+|++++|++.++        
T Consensus        72 -~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~  142 (477)
T 1wao_1           72 -KYIKGYYRRAASNMALGKFRAALRDYETVVKV-----K---PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  142 (477)
T ss_dssp             -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----S---TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTC
T ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhh
Confidence             23567889999999999999999999999884     2   3333466677777  888899999999998        


Q ss_pred             ---HHHHHHHHhcCCCCHH---HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCC----------------Cch
Q 006812          519 ---FAKDIMDVSLGPHHAD---SIEACQNLSKAYSSMGS--YTLAIEFQQRAIDAWESHGP----------------SAQ  574 (630)
Q Consensus       519 ---~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~----------------~~~  574 (630)
                         +++.+.....++..+.   ....+..+...+...+.  .+++..++.++.+++.....                +.+
T Consensus       143 ~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiH  222 (477)
T 1wao_1          143 LDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTH  222 (477)
T ss_dssp             CTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCT
T ss_pred             hhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCC
Confidence               6665554444444443   22344455555555554  45566788899888876332                356


Q ss_pred             hHHHHHHHHHHHH
Q 006812          575 DELREARRLLEQL  587 (630)
Q Consensus       575 ~~~~~A~~~~~~~  587 (630)
                      |++....++++..
T Consensus       223 G~~~~l~~~l~~~  235 (477)
T 1wao_1          223 GQFYDLLNIFELN  235 (477)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHc
Confidence            7776666666543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.20  E-value=4.1e-10  Score=92.20  Aligned_cols=109  Identities=14%  Similarity=0.009  Sum_probs=92.6

Q ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      ..|.....+..+|.++...|++++|+.+|++++...+        ....++..+|.++...|++++|+.+|++++.+   
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---   81 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--------YDARYFLGLGACRQSLGLYEQALQSYSYGALM---   81 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence            4466678889999999999999999999999988543        33567888999999999999999999999887   


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                         .|....++..+|.++...|++++|+..|++++...+.++.
T Consensus        82 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           82 ---DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             ---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence               6777788899999999999999999999999988775543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.19  E-value=4.5e-10  Score=90.45  Aligned_cols=124  Identities=17%  Similarity=0.058  Sum_probs=106.4

Q ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      ..+.....+..+|.++...|++++|+.++++++...+        ....++..+|.++...|++++|+.++++++..   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP--------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence            4466678899999999999999999999999998643        22567889999999999999999999999886   


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccH
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKF  385 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~  385 (630)
                         .|....++..+|.++...|++++|+..+++++...+.+    ..++..++.++...|++
T Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN----ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTTC
T ss_pred             ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHHhcC
Confidence               56667889999999999999999999999999976554    34788888888887764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.18  E-value=1.5e-08  Score=93.82  Aligned_cols=236  Identities=10%  Similarity=0.002  Sum_probs=172.1

Q ss_pred             HHhcCHH-HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHHHcCCCh
Q 006812          260 VAVLNFK-EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE----------HQKALEQNELSQKVLKTWGLSS  328 (630)
Q Consensus       260 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~  328 (630)
                      ...|.++ +|+.++.+++.+.        |....+++..+.+....+.          +++++.+++.++..      +|
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n--------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------~P  105 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NP  105 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CT
T ss_pred             HHcCCCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh------CC
Confidence            3566666 7899999988753        3445667777777776665          67888888887775      78


Q ss_pred             hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhcCC
Q 006812          329 ELLRAEIDAANMQIALGK--FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK-FADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~  405 (630)
                      ....++...+.++...+.  +++++.++.++++..+++    ..+|...+.+....|. +++++.++.+++...      
T Consensus       106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN----y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~------  175 (331)
T 3dss_A          106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN----FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------  175 (331)
T ss_dssp             TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC------
Confidence            889999999999999994  999999999999977666    4488999999999998 699999999998764      


Q ss_pred             CcHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc------
Q 006812          406 SPEEVADAYSEISMQYESM--------------NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT------  465 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~------  465 (630)
                        |....+|...+.++...              +.++++++++.+++.+     .+.  +..+|+.+..++...      
T Consensus       176 --p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~--d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          176 --FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPN--DQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             --SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STT--CHHHHHHHHHHHHSSSCGGGC
T ss_pred             --CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHhccCcccc
Confidence              45557888888888776              5688999999999986     222  244665555555444      


Q ss_pred             -----CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH---HcCChhHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 006812          466 -----GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL---ELDRPQSAAQVFAFAKDIMDVSLGPHHADSIE  537 (630)
Q Consensus       466 -----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  537 (630)
                           +.++++++++++++++        .|+...++..++.+..   ..|..++...++.+.+++        +|....
T Consensus       247 ~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------Dp~r~~  310 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------DPMRAA  310 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------CGGGHH
T ss_pred             chHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------Ccchhh
Confidence                 3467788888888773        2444445544444332   357778888888888874        455444


Q ss_pred             HHHHHHH
Q 006812          538 ACQNLSK  544 (630)
Q Consensus       538 ~~~~la~  544 (630)
                      -|..++.
T Consensus       311 ~y~d~~~  317 (331)
T 3dss_A          311 YLDDLRS  317 (331)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.17  E-value=4.6e-09  Score=97.63  Aligned_cols=242  Identities=6%  Similarity=-0.048  Sum_probs=178.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhhc
Q 006812          205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKKGL  283 (630)
Q Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~  283 (630)
                      .+..+...+..+....+..++|+..+.+++.+.        |....+++..+.+....| .+++++.++.+++...+   
T Consensus        52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n--------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP---  120 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMN--------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL---  120 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---
Confidence            344555555566666677789999999998654        444688999999999999 59999999999997543   


Q ss_pred             CCCCHHHHHHHHHHHHHHhcc-c-cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH--------HHHHH
Q 006812          284 GHNSVEVAHDRRLLGVIYSGL-E-EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE--------EAINT  353 (630)
Q Consensus       284 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~  353 (630)
                           ....+++..+.+.... + ++++++.++.+++..      +|....++...+.+....|.++        +++++
T Consensus       121 -----Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~  189 (349)
T 3q7a_A          121 -----KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW  189 (349)
T ss_dssp             -----CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -----CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence                 3457788888888887 7 889999988887764      7888999999999998888887        99999


Q ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCC
Q 006812          354 LKGVVRQTEKESETRALVFISMGKALCNQEK-------FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNE  426 (630)
Q Consensus       354 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  426 (630)
                      +.++++..+.+    ..+|...+.++...++       ++++++++.+++.+.        |....+|+.+..++...|+
T Consensus       190 ~~k~I~~dp~N----~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--------P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          190 CNEMLRVDGRN----NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--------PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHCTTC----HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCC----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence            99999976555    4489999999988886       788999999988775        4555788888888877665


Q ss_pred             HHH------------HHH-HHHHHHHHHHhCCCCC------CchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          427 FET------------AIS-LLKRTLALLEKLPQAQ------HSEGSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       427 ~~~------------A~~-~~~~al~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ...            .+. .+....+.+....+..      .....++.-++.+|...|+.++|.++++...+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            400            000 0112222222222221      23456778999999999999999999988654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.17  E-value=2.1e-11  Score=121.79  Aligned_cols=178  Identities=13%  Similarity=0.055  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812          289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR  368 (630)
Q Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  368 (630)
                      ..+..+..+|..+...|++++|+.+|++++++      .|....++.++|.+|..+|++++|+..++++++..+..    
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----   73 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----   73 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----
Confidence            44556677889999999999999999999998      67778999999999999999999999999999975443    


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ--YESMNEFETAISLLK-----------  435 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------  435 (630)
                      +.++.++|.+|..+|++++|+.++++++++.        |....++..++.+  +...|++++|++.++           
T Consensus        74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  145 (477)
T 1wao_1           74 IKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI  145 (477)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhh
Confidence            5589999999999999999999999999874        2333566777777  888999999999999           


Q ss_pred             HHHHHHHhCCCCCCchh----HHHHHHHHHHHHcCChhh--HHHHHHHHHHHHHH
Q 006812          436 RTLALLEKLPQAQHSEG----SVSARIGWLLLLTGKVPQ--AIPYLESAAERLKE  484 (630)
Q Consensus       436 ~al~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~~  484 (630)
                      +++.+.....+...+..    .....+...+...+...+  +..++.++.++...
T Consensus       146 ~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          146 ESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             SSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence            66665555444444431    223444555555555544  44477777777654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.16  E-value=9.8e-10  Score=99.94  Aligned_cols=274  Identities=10%  Similarity=-0.028  Sum_probs=175.0

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812          257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEID  336 (630)
Q Consensus       257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  336 (630)
                      .-.+..|+|..++.-..+        +.+..+..  ....+.++|..+|++....             ...| ...+...
T Consensus        21 kn~fy~G~yq~~i~e~~~--------~~~~~~~~--~~~~~~Rs~iAlg~~~~~~-------------~~~~-~~~a~~~   76 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEK--------FSKVTDNT--LLFYKAKTLLALGQYQSQD-------------PTSK-LGKVLDL   76 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHT--------SSCCCCHH--HHHHHHHHHHHTTCCCCCC-------------SSST-THHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHh--------cCccchHH--HHHHHHHHHHHcCCCccCC-------------CCCH-HHHHHHH
Confidence            345678999888873221        12223332  3445567777788776311             1122 2223333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 006812          337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSE  416 (630)
Q Consensus       337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  416 (630)
                      ++..+ . ++   |+..+++.+......    ...+..+|.++...|++++|++++.+.+....      .+....++..
T Consensus        77 la~~~-~-~~---a~~~l~~l~~~~~~~----~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~------~~~~lea~~l  141 (310)
T 3mv2_B           77 YVQFL-D-TK---NIEELENLLKDKQNS----PYELYLLATAQAILGDLDKSLETCVEGIDNDE------AEGTTELLLL  141 (310)
T ss_dssp             HHHHH-T-TT---CCHHHHHTTTTSCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC------STTHHHHHHH
T ss_pred             HHHHh-c-cc---HHHHHHHHHhcCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CcCcHHHHHH
Confidence            33333 2 22   677777766532111    23456899999999999999999998754221      0256678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC--CchhHHHHHH--HHHHHHcC--ChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQ--HSEGSVSARI--GWLLLLTG--KVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      ++.++..+|+.+.|.+.++++.+.     .++  ..+-.+...+  +++....|  ++++|..+|+++.+        ..
T Consensus       142 ~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--------~~  208 (310)
T 3mv2_B          142 AIEVALLNNNVSTASTIFDNYTNA-----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--------TF  208 (310)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--------TS
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc-----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------hC
Confidence            999999999999999999998775     110  0012244444  44466666  99999999999765        34


Q ss_pred             cc--HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812          491 FG--VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH--HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       491 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      |.  ....+.+   ++..+|++++|...++.+++.....-..+  .|+...++.+++.+...+|+  +|.++++++.+. 
T Consensus       209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-  282 (310)
T 3mv2_B          209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-  282 (310)
T ss_dssp             CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-
T ss_pred             CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-
Confidence            44  2233333   89999999999999997766532210000  24566888899999999998  777777776654 


Q ss_pred             HHcCCCch--hHHHHHHHHHHHHHHHh
Q 006812          567 ESHGPSAQ--DELREARRLLEQLKIKA  591 (630)
Q Consensus       567 ~~~~~~~~--~~~~~A~~~~~~~~~~~  591 (630)
                         .|+++  -++.+....|+++..+.
T Consensus       283 ---~P~hp~i~d~~~k~~~Fd~~~~ky  306 (310)
T 3mv2_B          283 ---DHEHAFIKHHQEIDAKFDELVRKY  306 (310)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---CCCChHHHHHHHHHHHHHHHHHHh
Confidence               44443  45667777888876654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.16  E-value=1.2e-08  Score=94.94  Aligned_cols=232  Identities=9%  Similarity=-0.007  Sum_probs=171.6

Q ss_pred             HHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhccc
Q 006812          166 ANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMG-RREEALEHLQKCLEIKELILEED  244 (630)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~  244 (630)
                      +....+..++|+..+.+++.+                .|....+++..+.++...| .+++++.++.+++.        .
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~----------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--------~  118 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRM----------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--------Q  118 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--------T
T ss_pred             HHHhCCCCHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------h
Confidence            333445567899999999998                4455678889999999999 59999999999884        3


Q ss_pred             hHHHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHH--------HHHHHH
Q 006812          245 SRELGVANRDLAEAFVAV-L-NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQ--------KALEQN  314 (630)
Q Consensus       245 ~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~  314 (630)
                      +|....+++..+.+.... + ++++++.++.++++..        +....+++..+.+....|.++        ++++++
T Consensus       119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d--------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~  190 (349)
T 3q7a_A          119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD--------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC  190 (349)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC--------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence            455578899999999988 7 8999999999988643        334567778888888888877        899999


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH
Q 006812          315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGK-------FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD  387 (630)
Q Consensus       315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~  387 (630)
                      +++++.      ++....++...+.+....+.       ++++++++.+++...+.+..    +|+.+..++...|+...
T Consensus       191 ~k~I~~------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S----aW~Ylr~Ll~~~~~~~~  260 (349)
T 3q7a_A          191 NEMLRV------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS----AWNYLRGFLKHFSLPLV  260 (349)
T ss_dssp             HHHHHH------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCCSG
T ss_pred             HHHHHh------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCCcc
Confidence            988887      78889999999999999887       79999999999997766643    77777777776665300


Q ss_pred             ----------------H-HHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          388 ----------------A-KRCLEIACGILDKKET-ISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       388 ----------------A-~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                                      . ....+.++++.....+ ...+....++..++.+|...|+.++|.++++...+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence                            0 0111111111111100 01123456888899999999999999999988654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.16  E-value=1.2e-10  Score=99.74  Aligned_cols=125  Identities=17%  Similarity=0.184  Sum_probs=102.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 006812          421 YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL  500 (630)
Q Consensus       421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  500 (630)
                      +...|++++|+..+++++..     .+.  ...++..+|.++...|++++|+.+|++++.+.        |....++..+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~-----~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l   84 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA-----NPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAAL   84 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH-----CCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHH
Confidence            34578999999999999986     222  34688999999999999999999999999853        4456688999


Q ss_pred             HHH-HHHcCCh--hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          501 GAA-YLELDRP--QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       501 ~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      |.+ +...|++  ++|+.+|++++.+        +|....++..+|.+|...|++++|+.+|++++++.+.
T Consensus        85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A           85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            999 8899999  9999999999985        3455578999999999999999999999999976443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.16  E-value=9.2e-11  Score=92.73  Aligned_cols=100  Identities=12%  Similarity=0.086  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      ..++.+|..+...|++++|+..|+++++.        .|....++..+|.++...|++++|+..|++++++        +
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~   81 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D   81 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            35688999999999999999999999983        4667789999999999999999999999999995        3


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812          533 ADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES  568 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  568 (630)
                      |+...++..+|.+|...|++++|+..|++++++.+.
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            555679999999999999999999999999976543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.15  E-value=8.6e-08  Score=88.76  Aligned_cols=224  Identities=10%  Similarity=-0.017  Sum_probs=167.1

Q ss_pred             HHHcCCHH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHhhhcCC
Q 006812          217 KTAMGRRE-EALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN----------FKEALPFGLKALEIHKKGLGH  285 (630)
Q Consensus       217 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~  285 (630)
                      ....|.++ +|+.++.+++.        .+|....+++..+.+....+.          +++++.++..++...+     
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~--------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-----  105 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----  105 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----
T ss_pred             HHHcCCCCHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-----
Confidence            34566665 78999998884        445556788888888877766          6788888888887543     


Q ss_pred             CCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhh
Q 006812          286 NSVEVAHDRRLLGVIYSGLE--EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK-FEEAINTLKGVVRQTE  362 (630)
Q Consensus       286 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~  362 (630)
                         ....+++..+.+....|  .+++++.++.+++..      +|....++...+.+....|. ++++++++.++++..+
T Consensus       106 ---Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p  176 (331)
T 3dss_A          106 ---KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  176 (331)
T ss_dssp             ---TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred             ---CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence               33567888889988888  489999999999987      78889999999999999998 6999999999998766


Q ss_pred             hcchHHHHHHHHHHHHHHhh--------------ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc----
Q 006812          363 KESETRALVFISMGKALCNQ--------------EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM----  424 (630)
Q Consensus       363 ~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----  424 (630)
                      .+.    .+|...+.++...              +.++++++++.+++.+.        |....+|+.+..++...    
T Consensus       177 ~N~----SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--------P~d~SaW~Y~r~ll~~~~~~~  244 (331)
T 3dss_A          177 SNY----SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGAGSGRC  244 (331)
T ss_dssp             CCH----HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHSSSCGG
T ss_pred             CCH----HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhccCcc
Confidence            553    3888888887776              67899999999998875        45556776555555444    


Q ss_pred             -------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHH---HcCChhhHHHHHHHHHHH
Q 006812          425 -------NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLL---LTGKVPQAIPYLESAAER  481 (630)
Q Consensus       425 -------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~  481 (630)
                             +.++++++++++++++.     ++.  ..++..++.+..   ..|..++...++.+.+++
T Consensus       245 ~~~~~~~~~l~~el~~~~elle~~-----pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          245 ELSVEKSTVLQSELESCKELQELE-----PEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhC-----ccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                   45788899999888872     222  223333332222   356777888888888874

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.14  E-value=5.7e-10  Score=95.46  Aligned_cols=119  Identities=14%  Similarity=0.221  Sum_probs=79.1

Q ss_pred             HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-H
Q 006812          343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ-Y  421 (630)
Q Consensus       343 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~  421 (630)
                      ..|++++|+..+++++...+.+    ..++..+|.++...|++++|+.++++++.+.        |....++..+|.+ +
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~   89 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAALATVLY   89 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHH
Confidence            4566677777777777654433    3367777777777777777777777777665        2334567777777 6


Q ss_pred             HHcCCH--HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          422 ESMNEF--ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       422 ~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ...|++  ++|+.++++++.+     .+.  ...++..+|.++...|++++|+.+|+++++
T Consensus        90 ~~~~~~~~~~A~~~~~~al~~-----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           90 YQASQHMTAQTRAMIDKALAL-----DSN--EITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            677777  7888888777775     221  234667778888888888888888887777

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.13  E-value=1e-09  Score=87.42  Aligned_cols=118  Identities=24%  Similarity=0.329  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK  489 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (630)
                      ...++..+|.++...|++++|+.++++++...     +.  ...++..+|.++...|++++|+.++++++..        
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   72 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------   72 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence            46788999999999999999999999999862     22  2457899999999999999999999999984        


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG  550 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  550 (630)
                      .|....++..+|.++...|++++|+.++++++.+        +|....++..++.++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence            2444668899999999999999999999999884        2444568888888887654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.11  E-value=1.5e-09  Score=104.40  Aligned_cols=130  Identities=15%  Similarity=0.079  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELIL--------EEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI  278 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  278 (630)
                      +..+..+|..+...|++++|+..|++++++.....        ....+....++.++|.+|...|++++|+.++++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            46678899999999999999999999998765420        0123444555556666666666666666666555543


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH
Q 006812          279 HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEA  350 (630)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  350 (630)
                      .        +....+++.+|.+|..+|++++|+.+|++++++      .|....++..++.++...++++++
T Consensus       303 ~--------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          303 D--------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1        122344555555555555555555555555554      333344444444444444444433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.11  E-value=1.6e-09  Score=86.98  Aligned_cols=102  Identities=14%  Similarity=0.065  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      .++.+|.++...|++++|+..|++++...     +.++ ...++..+|.++...|++++|+.+|++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            46788999999999999999999998862     2222 2358899999999999999999999999984     34555


Q ss_pred             cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812          492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM  524 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  524 (630)
                      ....++..+|.++...|++++|+..|++++...
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            557889999999999999999999999999853

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.10  E-value=2.1e-09  Score=86.51  Aligned_cols=107  Identities=22%  Similarity=0.272  Sum_probs=91.4

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      ..+.++..+|.++...|++++|+.+|++++..                .|....+++.+|.++...|++++|+.++++++
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   65 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL----------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35677889999999999999999999999987                12234678899999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI  278 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  278 (630)
                      ++.+.. ..+.+....++..+|.++...|++++|+.+|++++++
T Consensus        66 ~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           66 EVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhcccc-chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            887643 2334445788999999999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.09  E-value=2e-09  Score=87.54  Aligned_cols=103  Identities=11%  Similarity=0.037  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812          289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR  368 (630)
Q Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  368 (630)
                      ..+..+..+|.++...|++++|+.+|++++..      .|....++..+|.++...|++++|+..+++++...+.+    
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----   76 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----   76 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh----
Confidence            34677889999999999999999999999987      66778899999999999999999999999999976554    


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDK  401 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  401 (630)
                      ..++..+|.++...|++++|+.++++++.+...
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            458999999999999999999999999998865

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.09  E-value=1.1e-09  Score=105.25  Aligned_cols=136  Identities=13%  Similarity=0.120  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhC------CCCChhHHHHHHHhhHHHhhccChHHHHHHHHHH
Q 006812          110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERN------NRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKA  183 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (630)
                      ..+..+..+|..++..| ++++|+..|++++++.+.....      ....+..+.++.++|.+|..+|++++|+.+++++
T Consensus       221 ~~a~~~~~~g~~~~~~g-~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQ-NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34577899999999999 9999999999999976542000      0013567889999999999999999999999999


Q ss_pred             HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Q 006812          184 NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL  263 (630)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (630)
                      +.+                .|....+++.+|.+|..+|++++|+..|++++++.        |....++..++.++...+
T Consensus       300 l~~----------------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          300 LEI----------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HTT----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHH
T ss_pred             HHh----------------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHH
Confidence            987                23345788999999999999999999999999764        222567888899998888


Q ss_pred             CHHHHHH
Q 006812          264 NFKEALP  270 (630)
Q Consensus       264 ~~~~A~~  270 (630)
                      +++++..
T Consensus       356 ~~~~a~k  362 (370)
T 1ihg_A          356 AQKDKEK  362 (370)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.08  E-value=2.6e-09  Score=85.03  Aligned_cols=118  Identities=17%  Similarity=0.191  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812          290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                      ...++..+|.++...|++++|+.++++++..      .|....++..+|.++...|++++|+.++++++...+.+    .
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~   77 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----A   77 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----H
Confidence            3567889999999999999999999999876      45567789999999999999999999999999875544    4


Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC
Q 006812          370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN  425 (630)
Q Consensus       370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  425 (630)
                      .++..+|.++...|++++|..++++++...        |....++..++.++...|
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           78 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhcc
Confidence            478899999999999999999999998764        344467778888776554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.08  E-value=3.6e-08  Score=89.71  Aligned_cols=179  Identities=10%  Similarity=-0.006  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--cchHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK--ESETRA  369 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~  369 (630)
                      ..+..+|.++...|++++|+.++.+.+..    +.......++..++.++..+|+.+.|.+.++++.+..+.  ......
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~  176 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM  176 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence            33468999999999999999999876442    112478889999999999999999999999998775441  011222


Q ss_pred             HHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhhcCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812          370 LVFISMGKALCNQE--KFADAKRCLEIACGILDKKETISPEE--VADAYSEISMQYESMNEFETAISLLKRTLALLEKLP  445 (630)
Q Consensus       370 ~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  445 (630)
                      .+...-+++....|  ++.+|...|+++....        |+  ....+.+   ++..+|++++|...++..++......
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~  245 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEELSQTF--------PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE  245 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence            23333354466556  8999999999864432        22  2233333   89999999999999998777654431


Q ss_pred             CC---CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812          446 QA---QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG  492 (630)
Q Consensus       446 ~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (630)
                      ..   ++.++.++.+++.+....|+  +|.++++++.+     ..|+||.
T Consensus       246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~  288 (310)
T 3mv2_B          246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-----LDHEHAF  288 (310)
T ss_dssp             TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-----TTCCCHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-----hCCCChH
Confidence            11   12345678888888888997  88999998888     4456664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.08  E-value=3.5e-09  Score=84.99  Aligned_cols=101  Identities=17%  Similarity=0.044  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812          210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE  289 (630)
Q Consensus       210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  289 (630)
                      ++.+|.++...|++++|+..|+++++..     ++++....++..+|.++...|++++|+.+|++++...+     +++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~   74 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-----THDK   74 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-----CCcc
Confidence            4567777777777777777777776543     34444456677777777777777777777777776543     2333


Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                      ...++..+|.++...|++++|+.+|++++..
T Consensus        75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3556667777777777777777777666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.07  E-value=4.4e-09  Score=84.54  Aligned_cols=123  Identities=13%  Similarity=0.142  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      ....+..+|.++...|++++|+.++++++...+.+    ..++..+|.++...|++++|+.++++++...... ....+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~   77 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chhHHH
Confidence            45677788888888999999999999888865443    4578889999999999999999999998887543 223334


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT  465 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~  465 (630)
                      ...++..+|.++...|++++|+.+|++++.+     .+   .......++.+....
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE-----HR---TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CC---CHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999986     22   233555666555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.07  E-value=3.1e-09  Score=83.58  Aligned_cols=113  Identities=13%  Similarity=0.078  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      +..+..+|..+...|++++|+..+++++..     .+.  ...++..+|.++...|++++|+.+++++++.        .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   68 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------K   68 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------C
Confidence            467889999999999999999999999986     222  3458899999999999999999999999984        3


Q ss_pred             ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812          491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY  546 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  546 (630)
                      |....++..+|.++...|++++|..++++++++        .|....++..++.+.
T Consensus        69 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           69 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence            455678999999999999999999999999873        344446667776654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.06  E-value=6.7e-10  Score=87.73  Aligned_cols=98  Identities=11%  Similarity=-0.021  Sum_probs=84.2

Q ss_pred             HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812          159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE  238 (630)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  238 (630)
                      .++.+|..+...|++++|+..|++++..                .|....+++.+|.++...|++++|+..|++++++. 
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK----------------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            3577999999999999999999999998                34446788899999999999999999999999654 


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                             |....++..+|.+|...|++++|+..+++++++.+
T Consensus        82 -------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           82 -------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             -------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence                   33357899999999999999999999999998655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.05  E-value=3.1e-10  Score=108.02  Aligned_cols=145  Identities=14%  Similarity=0.022  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-CC---------chhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA-QH---------SEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                      +..+..+..+|..+...|++++|+..|++++.+....... ..         ....++.++|.+|..+|++++|+.++++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3556778899999999999999999999999873221000 00         0013778899999999999999999999


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHH
Q 006812          478 AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY-SSMGSYTLAI  556 (630)
Q Consensus       478 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~  556 (630)
                      ++++        +|....+++++|.+|..+|++++|+..|++++.+        .|....++..++.+. ...+..+++.
T Consensus       256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9884        3556678889999999999999999999998874        355556777888774 4556677788


Q ss_pred             HHHHHHHHHHHH
Q 006812          557 EFQQRAIDAWES  568 (630)
Q Consensus       557 ~~~~~al~~~~~  568 (630)
                      ..|.+++...+.
T Consensus       320 ~~~~~~l~~~p~  331 (338)
T 2if4_A          320 EMYKGIFKGKDE  331 (338)
T ss_dssp             ------------
T ss_pred             HHHHHhhCCCCC
Confidence            888888765443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.01  E-value=7.7e-10  Score=87.01  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=75.7

Q ss_pred             HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812          464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS  543 (630)
Q Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  543 (630)
                      .+|++++|+.+|++++++     +.++|....++.++|.+|..+|++++|+.+|++++++        +|+...++.++|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            468999999999999982     2236888899999999999999999999999999985        355568999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHH
Q 006812          544 KAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       544 ~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                      .++...|++++|+.+++++++..
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.00  E-value=1e-09  Score=104.47  Aligned_cols=147  Identities=10%  Similarity=0.033  Sum_probs=88.3

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCC-------ChhHHHHHHHhhHHHhhccChHHHHHHHH
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRP-------SLLVAMCLQVMGSANYSFKRFSDSLGYLS  181 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (630)
                      +..+..+..+|..++..| ++++|+..|++++.+.+........       ......++.++|.+|..+|+|++|+.+|+
T Consensus       176 ~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEE-KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSS-CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456778899999999999 9999999999999886443100000       00011378999999999999999999999


Q ss_pred             HHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH-HH
Q 006812          182 KANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEA-FV  260 (630)
Q Consensus       182 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~  260 (630)
                      +++.+                .|....+++++|.+|..+|++++|+..|++++++.        |....++..++.+ ..
T Consensus       255 ~al~~----------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          255 IVLTE----------------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHH
Confidence            99998                23345788999999999999999999999998654        3335667778877 44


Q ss_pred             HhcCHHHHHHHHHHHHHHHh
Q 006812          261 AVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       261 ~~g~~~~A~~~~~~al~~~~  280 (630)
                      ..+..+++...|.+++...+
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p  330 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKD  330 (338)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCC
Confidence            56778888889998887655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.99  E-value=7.4e-09  Score=81.36  Aligned_cols=113  Identities=12%  Similarity=0.011  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL  370 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  370 (630)
                      +..+..+|..+...|++++|+.++++++..      .|....++..+|.++...|++++|+..+++++...+.+    ..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~   73 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GK   73 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc----HH
Confidence            456788999999999999999999999886      56668899999999999999999999999999976544    45


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY  421 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  421 (630)
                      ++..+|.++...|++++|..++++++...        |....++..++.+.
T Consensus        74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~  116 (118)
T 1elw_A           74 GYSRKAAALEFLNRFEEAKRTYEEGLKHE--------ANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHhh
Confidence            88999999999999999999999987653        23345556665543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=4.6e-09  Score=86.62  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812          204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL  283 (630)
Q Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  283 (630)
                      +.....++.+|..+...|++++|+.+|++++++.     ++++....++..+|.+|...|++++|+.++++++.+.+   
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---   96 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG---   96 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---
Confidence            3445777889999999999999999999888532     34444577888889999999999999999888887633   


Q ss_pred             CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                        +   ...++..+|.++...|++++|+.++++++.+
T Consensus        97 --~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           97 --G---DVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             --C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             --c---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence              1   2456778888888888888888888887776

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=3.5e-09  Score=87.31  Aligned_cols=109  Identities=17%  Similarity=0.102  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812          246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG  325 (630)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  325 (630)
                      +..+..+..+|..+...|++++|+.+|++++++.+     +++....++..+|.++...|++++|+.++++++.+     
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----   94 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----   94 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence            34467889999999999999999999999987432     33345788999999999999999999999999887     


Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812          326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  365 (630)
                       .|....++..+|.++...|++++|+.++++++...+.+.
T Consensus        95 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A           95 -DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             -TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             -CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence             556688899999999999999999999999998766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.97  E-value=1.1e-09  Score=85.22  Aligned_cols=98  Identities=17%  Similarity=0.131  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ..++..+|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+.+|++++.+        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            356788999999999999999999999984        2445668899999999999999999999999984        


Q ss_pred             CHH--HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 006812          532 HAD--SIEACQNLSKAYSSM-GSYTLAIEFQQRAIDA  565 (630)
Q Consensus       532 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  565 (630)
                      .|.  ...++..+|.++... |++++|++++++++..
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            344  557899999999999 9999999999998754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.91  E-value=1.8e-09  Score=86.88  Aligned_cols=107  Identities=21%  Similarity=0.121  Sum_probs=87.0

Q ss_pred             HHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHHHHHhcCCCC
Q 006812          463 LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRP----------QSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      .+.+.|++|++.+++++++        +|..+.++.++|.++...+++          ++|+..|++++++        +
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d   76 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence            3456789999999999983        577788999999999999876          4999999999995        4


Q ss_pred             HHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812          533 ADSIEACQNLSKAYSSMG-----------SYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK  590 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~  590 (630)
                      |+...+++++|.+|..+|           ++++|+++|++|+++-+     ....+.+++++..+..+.
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P-----~~~~y~~al~~~~ka~el  140 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP-----DNTHYLKSLEMTAKAPQL  140 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHTHHHH
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHhCHhc
Confidence            667789999999999885           89999999999998733     235677777777665443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.88  E-value=7.5e-09  Score=81.26  Aligned_cols=94  Identities=19%  Similarity=0.163  Sum_probs=78.0

Q ss_pred             HhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006812          261 AVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANM  340 (630)
Q Consensus       261 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~  340 (630)
                      ..|++++|+.+|++++++.     .+.|....++.++|.+|...|++++|+.++++++++      .|....++..+|.+
T Consensus         2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~   70 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFYAMV   70 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHHHHH
Confidence            4689999999999999741     124667788999999999999999999999999987      67778899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812          341 QIALGKFEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       341 ~~~~g~~~~A~~~~~~~l~~~~~~~  365 (630)
                      +...|++++|+..+++++...+.++
T Consensus        71 ~~~~g~~~~A~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           71 LYNLGRYEQGVELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            9999999999999999998776554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.86  E-value=5.4e-09  Score=81.31  Aligned_cols=97  Identities=13%  Similarity=0.079  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812          411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH  490 (630)
Q Consensus       411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (630)
                      ..++..+|.++...|++++|+.++++++.+     .+.  ...++..+|.++...|++++|+.++++++++        .
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~   70 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I   70 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence            456788999999999999999999999986     222  3457899999999999999999999999983        3


Q ss_pred             cc--HHHHHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 006812          491 FG--VGYIYNNLGAAYLEL-DRPQSAAQVFAFAKD  522 (630)
Q Consensus       491 ~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~  522 (630)
                      |.  ...++..+|.++... |++++|+.++++++.
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            45  677899999999999 999999999999976

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=4.7e-08  Score=99.32  Aligned_cols=174  Identities=8%  Similarity=0.012  Sum_probs=145.8

Q ss_pred             CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK----------FADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      ..++|+..+.+++...+++    ..+|+..+.++...|+          +++++.++++++...        |....+|.
T Consensus        44 ~~eeal~~~~~~l~~nP~~----~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--------pK~y~aW~  111 (567)
T 1dce_A           44 LDESVLELTSQILGANPDF----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------PKSYGTWH  111 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence            3467899999999866555    4589999999999888          999999999998765        56668999


Q ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812          416 EISMQYESMN--EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG-KVPQAIPYLESAAERLKESFGPKHFG  492 (630)
Q Consensus       416 ~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~  492 (630)
                      ..+.++...|  +++++++++.+++++     ++  ....+|...+.+....| .++++++++.++++        .+|.
T Consensus       112 hR~w~l~~l~~~~~~~el~~~~k~l~~-----d~--~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--------~~p~  176 (567)
T 1dce_A          112 HRCWLLSRLPEPNWARELELCARFLEA-----DE--RNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--------RNFS  176 (567)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHH-----CT--TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--------TTCC
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHhh-----cc--ccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--------HCCC
Confidence            9999999999  779999999999997     22  23568899999999999 89999999999987        5677


Q ss_pred             HHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 006812          493 VGYIYNNLGAAYLEL--------------DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL  554 (630)
Q Consensus       493 ~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  554 (630)
                      ...+|+..+.++...              +.+++|++++.+|+.+        +|+...+|+.++.++...+++++
T Consensus       177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCCccc
Confidence            788999999999885              5578999999999884        35555799999999999888555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.84  E-value=5.4e-08  Score=98.87  Aligned_cols=175  Identities=9%  Similarity=-0.065  Sum_probs=147.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 006812          305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK----------FEEAINTLKGVVRQTEKESETRALVFIS  374 (630)
Q Consensus       305 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~  374 (630)
                      ...++|++.+++++.+      +|....++...+.++...|+          +++++..+.+++...+++    ..+|..
T Consensus        43 ~~~eeal~~~~~~l~~------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----y~aW~h  112 (567)
T 1dce_A           43 ELDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----YGTWHH  112 (567)
T ss_dssp             CCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHH
Confidence            3446789999999988      88899999999999999998          999999999999976665    448999


Q ss_pred             HHHHHHhhc--cHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812          375 MGKALCNQE--KFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN-EFETAISLLKRTLALLEKLPQAQHSE  451 (630)
Q Consensus       375 la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~  451 (630)
                      .+.++...+  ++++++.++++++++.        |....+|...+.+....| .++++++++.++++.       +...
T Consensus       113 R~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-------~p~n  177 (567)
T 1dce_A          113 RCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-------NFSN  177 (567)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-------TCCC
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------CCCC
Confidence            999999999  7799999999999875        455689999999999999 899999999888763       2334


Q ss_pred             hHHHHHHHHHHHHc--------------CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH
Q 006812          452 GSVSARIGWLLLLT--------------GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS  512 (630)
Q Consensus       452 ~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  512 (630)
                      ..+|...+.++...              +.+++|++++.+++.+        .|....+|+.++.++...+++++
T Consensus       178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCCccc
Confidence            57889999988875              5578899999999884        35555688999999999888666

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.83  E-value=3.4e-08  Score=77.18  Aligned_cols=87  Identities=20%  Similarity=0.129  Sum_probs=75.9

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812          469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS  548 (630)
Q Consensus       469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  548 (630)
                      ++|+..|+++++        ..|....++..+|.+|...|++++|+.+|++++.+        +|....++..+|.+|..
T Consensus         2 ~~a~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            2 QAITERLEAMLA--------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CCHHHHHHHHHT--------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence            468888888887        34666789999999999999999999999999984        35556789999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCC
Q 006812          549 MGSYTLAIEFQQRAIDAWESHGP  571 (630)
Q Consensus       549 ~g~~~~A~~~~~~al~~~~~~~~  571 (630)
                      .|++++|+.+|++++++.+..+.
T Consensus        66 ~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHhcccccc
Confidence            99999999999999999877654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.83  E-value=5.3e-06  Score=82.86  Aligned_cols=103  Identities=8%  Similarity=-0.017  Sum_probs=58.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH  207 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  207 (630)
                      +.+.|...|++++..++.                         |+++.+...|++++...            |+     .
T Consensus        10 ~i~~aR~vyer~l~~~P~-------------------------~~~e~~~~iferal~~~------------ps-----~   47 (493)
T 2uy1_A           10 ELSSPSAIMEHARRLYMS-------------------------KDYRSLESLFGRCLKKS------------YN-----L   47 (493)
T ss_dssp             --CCHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHSTTC------------CC-----H
T ss_pred             chHHHHHHHHHHHHHCCC-------------------------CCHHHHHHHHHHHhccC------------CC-----H
Confidence            477888888888877732                         67889999999988751            11     1


Q ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHH
Q 006812          208 AVHLELANVKTAMGR-REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV----AVLNFKEALPFGLKALE  277 (630)
Q Consensus       208 ~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~  277 (630)
                      .+|..........+. .+.....|+.++...    |. ++.....+......+.    ..|+.+.+...|++++.
T Consensus        48 ~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~  117 (493)
T 2uy1_A           48 DLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ  117 (493)
T ss_dssp             HHHHHHHHHHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence            233333333333342 344556667666432    21 1222344444444332    35678888999999986

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.82  E-value=2.3e-06  Score=85.54  Aligned_cols=345  Identities=10%  Similarity=-0.072  Sum_probs=195.4

Q ss_pred             hcc-ChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHH
Q 006812          169 SFK-RFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE  247 (630)
Q Consensus       169 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  247 (630)
                      ..| +.+.|...|++++..+                |.               |+++.+...|++++..        .|.
T Consensus         6 ~~~~~i~~aR~vyer~l~~~----------------P~---------------~~~e~~~~iferal~~--------~ps   46 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY----------------MS---------------KDYRSLESLFGRCLKK--------SYN   46 (493)
T ss_dssp             ------CCHHHHHHHHHHHH----------------HT---------------TCHHHHHHHHHHHSTT--------CCC
T ss_pred             HcCcchHHHHHHHHHHHHHC----------------CC---------------CCHHHHHHHHHHHhcc--------CCC
Confidence            446 3788888888888772                11               7899999999999852        221


Q ss_pred             HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHH
Q 006812          248 LGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS----GLEEHQKALEQNELSQKVLK  322 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~  322 (630)
                       ...+..........+ ..+.....|+.++.....  .....   ..+......+.    .+|+.+.+...|++|+.+  
T Consensus        47 -~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--  118 (493)
T 2uy1_A           47 -LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSY---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--  118 (493)
T ss_dssp             -HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCH---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--
T ss_pred             -HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccH---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--
Confidence             234444444444444 245566778888765321  11222   33433344332    346788899999998863  


Q ss_pred             HcCCChhHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-------
Q 006812          323 TWGLSSELLRAEIDAANM-------------QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-------  382 (630)
Q Consensus       323 ~~~~~~~~~~~~~~la~~-------------~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-------  382 (630)
                        +. ......+......             -.....+..|...++.+....+....   ..|......-...       
T Consensus       119 --P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~---~~W~~y~~~E~~~~~~~~~~  192 (493)
T 2uy1_A          119 --PM-GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV---KNAARLIDLEMENGMKLGGR  192 (493)
T ss_dssp             --CC-TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH---HHHHHHHHHHHTCTTCCCHH
T ss_pred             --hh-hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHhcCCccCcch
Confidence              11 1111111111111             11223444555555555543332111   1333333322211       


Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------C------
Q 006812          383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ---------A------  447 (630)
Q Consensus       383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~------  447 (630)
                      +..+.....|++++...        |.....|...+..+...|+.++|...|++++.. +....         .      
T Consensus       193 ~~~~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~  263 (493)
T 2uy1_A          193 PHESRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYG  263 (493)
T ss_dssp             HHHHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHH
T ss_pred             hhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHH
Confidence            01344567888887755        344678889999999999999999999999976 22100         0      


Q ss_pred             -----------------CCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-
Q 006812          448 -----------------QHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD-  508 (630)
Q Consensus       448 -----------------~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  508 (630)
                                       ... ...+|...+....+.++.+.|...|+++ .     . +.  ....++...|.+....+ 
T Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-----~-~~--~~~~v~i~~A~lE~~~~~  334 (493)
T 2uy1_A          264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-----N-EG--VGPHVFIYCAFIEYYATG  334 (493)
T ss_dssp             HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-----T-SC--CCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-----C-CC--CChHHHHHHHHHHHHHCC
Confidence                             000 0122333444444566788888888877 2     1 11  23345555566666555 


Q ss_pred             ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HHHHHHcC--CCchhHHHHHHHH
Q 006812          509 RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA---IDAWESHG--PSAQDELREARRL  583 (630)
Q Consensus       509 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~~~~~--~~~~~~~~~A~~~  583 (630)
                      +.+.|...|+.+++.+     ++.|+   .+...+......|+.+.|..+|+++   ..++...-  ....|+.+.+..+
T Consensus       335 d~~~ar~ife~al~~~-----~~~~~---~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v  406 (493)
T 2uy1_A          335 SRATPYNIFSSGLLKH-----PDSTL---LKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFREL  406 (493)
T ss_dssp             CSHHHHHHHHHHHHHC-----TTCHH---HHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHC-----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6999999999999843     23454   3444567778899999999998886   34444421  1245677778888


Q ss_pred             HHHHHHHhc
Q 006812          584 LEQLKIKAS  592 (630)
Q Consensus       584 ~~~~~~~~~  592 (630)
                      +++......
T Consensus       407 ~~~~~~~~~  415 (493)
T 2uy1_A          407 VDQKMDAIK  415 (493)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888776554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.79  E-value=6.3e-08  Score=78.21  Aligned_cols=110  Identities=17%  Similarity=0.159  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812          425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY  504 (630)
Q Consensus       425 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  504 (630)
                      +++++|+.+|+++.+.     +  ++.  ..  +|.+|...+..++|+.+|+++.+.          ....++++||.+|
T Consensus         9 ~d~~~A~~~~~~aa~~-----g--~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y   67 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-----N--EMF--GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-----T--CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-----C--CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence            4788999999999874     2  222  33  999999999999999999999882          3356889999999


Q ss_pred             HH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 006812          505 LE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS----MGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       505 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  565 (630)
                      ..    .+++++|+.+|+++.+.       .+   ..++++||.+|..    .+++++|+.+|+++.+.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            99    89999999999999873       23   3689999999999    99999999999999864

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.75  E-value=2.6e-09  Score=83.04  Aligned_cols=99  Identities=16%  Similarity=0.071  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ...+..+|.++...|++++|+..|++++++        .|....++.++|.++...|++++|+..|++++.+....  ..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~   73 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA--EH   73 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST--TS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--cH
Confidence            457899999999999999999999999984        35556789999999999999999999999999842110  00


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812          532 HADSIEACQNLSKAYSSMGSYTLAIEFQQ  560 (630)
Q Consensus       532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~  560 (630)
                      ......++..+|.++...|++++|+..++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           74 VAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            01126788999999999988777765543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.4e-08  Score=78.76  Aligned_cols=100  Identities=12%  Similarity=-0.028  Sum_probs=80.7

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .+.++..+|.++...|++++|+..|++++.+                .|....+++.+|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA----------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3567889999999999999999999999998                223356788999999999999999999999996


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGL  273 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  273 (630)
                      +.+..  .+......++..+|.++...|+++.|+..++
T Consensus        67 ~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           67 YTSTA--EHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             SCSST--TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             hCCCc--cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            54221  1112347788999999999999888876554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.70  E-value=8.3e-08  Score=72.57  Aligned_cols=75  Identities=17%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      +|....+++.+|.+|...|++++|+.+|++++++        +|+...++..+|.+|...|++++|+..|++++++.+..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4666778999999999999999999999999985        35555799999999999999999999999999997775


Q ss_pred             CCC
Q 006812          570 GPS  572 (630)
Q Consensus       570 ~~~  572 (630)
                      ++.
T Consensus        75 ~~~   77 (100)
T 3ma5_A           75 GTQ   77 (100)
T ss_dssp             SCH
T ss_pred             Cch
Confidence            543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=1.4e-07  Score=76.18  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=91.9

Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 006812          383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL  462 (630)
Q Consensus       383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  462 (630)
                      +++++|+.+|+++.+..      + +   .+.  +|.+|...+..++|+.+|+++.+.         ....+++++|.+|
T Consensus         9 ~d~~~A~~~~~~aa~~g------~-~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~---------g~~~a~~~Lg~~y   67 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN------E-M---FGC--LSLVSNSQINKQKLFQYLSKACEL---------NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT------C-T---THH--HHHHTCTTSCHHHHHHHHHHHHHT---------TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC------C-H---hhh--HHHHHHcCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHH
Confidence            57889999999987542      1 1   222  999999999999999999999873         1345889999999


Q ss_pred             HH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 006812          463 LL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       463 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  523 (630)
                      ..    .+++++|+.+|+++.+.          ....++++||.+|..    .+++++|+.+|+++.+.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            99    89999999999999872          235588999999999    89999999999999884

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.69  E-value=5.8e-08  Score=78.13  Aligned_cols=87  Identities=15%  Similarity=0.124  Sum_probs=76.3

Q ss_pred             ccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhhcchHHHHHH
Q 006812          303 GLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF----------EEAINTLKGVVRQTEKESETRALVF  372 (630)
Q Consensus       303 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l~~~~~~~~~~~~~~  372 (630)
                      +.+.+++|+..+++++++      +|....+++++|.++...+++          ++|+..|++++++.+..    ..+|
T Consensus        14 r~~~feeA~~~~~~Ai~l------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~----~~A~   83 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DEAV   83 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             HHhHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc----HHHH
Confidence            456789999999999988      888999999999999998875          59999999999976665    4489


Q ss_pred             HHHHHHHHhhc-----------cHHHHHHHHHHHHHHH
Q 006812          373 ISMGKALCNQE-----------KFADAKRCLEIACGIL  399 (630)
Q Consensus       373 ~~la~~~~~~~-----------~~~~A~~~~~~a~~~~  399 (630)
                      +++|.+|..+|           ++++|+.+|++|+++.
T Consensus        84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            99999999885           8999999999999885

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.68  E-value=8.8e-08  Score=71.01  Aligned_cols=84  Identities=25%  Similarity=0.292  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP  530 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  530 (630)
                      ....+..+|.++...|++++|+.+|++++++        .|....++..+|.++...|++++|+.+|++++.+       
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence            3567899999999999999999999999984        3455678999999999999999999999999985       


Q ss_pred             CCHHHHHHHHHHHHHHHhcC
Q 006812          531 HHADSIEACQNLSKAYSSMG  550 (630)
Q Consensus       531 ~~~~~~~~~~~la~~~~~~g  550 (630)
                       +|....++.++|.++...|
T Consensus        73 -~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 -DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -CTTCHHHHHHHHHHHHHHC
T ss_pred             -CCCCHHHHHHHHHHHHhcC
Confidence             3445578899999987765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.62  E-value=3.1e-07  Score=71.60  Aligned_cols=85  Identities=13%  Similarity=-0.020  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC
Q 006812          266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG  345 (630)
Q Consensus       266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g  345 (630)
                      ++|+..|+++++..+        ....++..+|.+|...|++++|+.+|++++.+      .|....++..+|.++...|
T Consensus         2 ~~a~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            2 QAITERLEAMLAQGT--------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CCHHHHHHHHHTTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcC
Confidence            357777888776432        23467888999999999999999999998887      5667788899999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhc
Q 006812          346 KFEEAINTLKGVVRQTEKE  364 (630)
Q Consensus       346 ~~~~A~~~~~~~l~~~~~~  364 (630)
                      ++++|+..|++++...+..
T Consensus        68 ~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccc
Confidence            9999999999998876554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.62  E-value=4e-06  Score=83.74  Aligned_cols=167  Identities=10%  Similarity=-0.019  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHH
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN---------EFETAISLLKRTLALL  441 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~  441 (630)
                      .+..+-..+.+.|++++|.+.|++..+.   ...+    ...+|+.+-.++...+         ..++|.++|++...  
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~p----d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~--   98 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN---GVQL----SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV--   98 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCC----CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCC----CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--
Confidence            3455567788888899888888876543   1111    1245666666665433         46888888888765  


Q ss_pred             HhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006812          442 EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK  521 (630)
Q Consensus       442 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  521 (630)
                          ..-.|+..+|..+...|.+.|++++|..+|++..+.       .......+|+.+-..|.+.|+.++|.+.|++..
T Consensus        99 ----~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-------g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           99 ----DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-------GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             ----TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence                234467778999999999999999999999987651       222245688999999999999999999999987


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          522 DIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      +..      ..|+. .+|..|..+|.+.|+.++|.+++++..+
T Consensus       168 ~~G------~~Pd~-~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          168 ESE------VVPEE-PELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HTT------CCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcC------CCCCH-HHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            621      33444 4889999999999999999999998754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.61  E-value=4.9e-07  Score=66.85  Aligned_cols=87  Identities=18%  Similarity=0.161  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                      .+.....+..+|.++...|++++|+.++++++..      .|....++..+|.++...|++++|+..+++++...+.+  
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--   76 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--   76 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--
Confidence            3455678889999999999999999999999987      56667889999999999999999999999999976544  


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 006812          367 TRALVFISMGKALCNQE  383 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~  383 (630)
                        ..++..+|.++...|
T Consensus        77 --~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 --AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --HHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHhcC
Confidence              447788888876554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.58  E-value=4.7e-07  Score=68.33  Aligned_cols=71  Identities=10%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      |..+.+++.+|.+|...|++++|+..|++++.+                .|....+++.+|.+|...|++++|+..|+++
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVET----------------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345678899999999999999999999999998                2333457889999999999999999999999


Q ss_pred             HHHHHHH
Q 006812          234 LEIKELI  240 (630)
Q Consensus       234 l~~~~~~  240 (630)
                      +++.+..
T Consensus        68 l~l~~~~   74 (100)
T 3ma5_A           68 IEVAREE   74 (100)
T ss_dssp             HHHHHHH
T ss_pred             HhhhhcC
Confidence            9887554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.56  E-value=7.1e-06  Score=81.93  Aligned_cols=168  Identities=10%  Similarity=-0.017  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHHHHhhc
Q 006812          333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ---------EKFADAKRCLEIACGILDKKE  403 (630)
Q Consensus       333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~  403 (630)
                      .+..+-..+.+.|+.++|+.+|+++.+..-..+   ..+|+.+-.++...         +..++|...|++...   ...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~---~G~  101 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV---DKV  101 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH---TTC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH---hCC
Confidence            345566788899999999999999877432222   33666666666543         346778887776533   111


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812          404 TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK  483 (630)
Q Consensus       404 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  483 (630)
                      .   | ...+|+.+...|.+.|++++|..++++....      .-.|+..+|..+...|.+.|+.++|.++|++..+.  
T Consensus       102 ~---P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--  169 (501)
T 4g26_A          102 V---P-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES--  169 (501)
T ss_dssp             C---C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred             C---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence            1   1 2357889999999999999999999987652      33466778999999999999999999999988761  


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                         | -.| ...+|..|..+|.+.|+.++|.+++++..+.
T Consensus       170 ---G-~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          170 ---E-VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             ---T-CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---C-CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence               1 223 3458899999999999999999999998664

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.41  E-value=4.5e-05  Score=72.08  Aligned_cols=213  Identities=10%  Similarity=0.056  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA-LGKFEEAINTLKGVVRQTEKESETRAL  370 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~  370 (630)
                      .+...||.+|...|++++-.+++......+...+. .........+-..+.. -+..+.-++++.++++...........
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISK-AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999988887765444333221 1222223333333332 355666777888888776655433222


Q ss_pred             --HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          371 --VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       371 --~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                        .-..+|.+|...|+|.+|.+.+.+..+-+.+..  +......++..-..+|...+++.++...+.++..+.....  .
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d--d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~  174 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLD--DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--C  174 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--C
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--C
Confidence              445899999999999999999999888876643  3456788888899999999999999999999999887763  2


Q ss_pred             Cch--hHHHHHHHHHHH-HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH
Q 006812          449 HSE--GSVSARIGWLLL-LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS  512 (630)
Q Consensus       449 ~~~--~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  512 (630)
                      +|.  +.+...-|.++. ..++|.+|..+|-++++-+...   ..|....++..++.+-...++..+
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r~e  238 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQSDD  238 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCHHH
Confidence            343  445577788888 8999999999999988655432   334444455556666666666433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.39  E-value=0.00012  Score=64.86  Aligned_cols=207  Identities=13%  Similarity=-0.014  Sum_probs=127.2

Q ss_pred             HHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcC--------------CHHHHHHHH
Q 006812          165 SANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMG--------------RREEALEHL  230 (630)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~  230 (630)
                      .++....+.+-+.+-+--.+.+.+.+...+  |++.......+..|...+..+....              ++..|...|
T Consensus        33 ~~~~~~~D~elv~~~~P~~Lk~~e~Ll~~~--P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly  110 (301)
T 3u64_A           33 RVFTEEDDLDLVAQSLPLVLKVYEALHLQN--PAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLY  110 (301)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCHHHHHHhccHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHH
Confidence            556666777666666666666666555444  5555544455555555555554432              345566666


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-------
Q 006812          231 QKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-------  303 (630)
Q Consensus       231 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------  303 (630)
                      .++.+...+.+...+|....        -...++..    -+.+++.   +    -.+..+..++..|.+...       
T Consensus       111 ~ra~~y~~raL~~~~~~~~~--------~~~~~~~~----~~~~~l~---~----~~~~dve~L~W~ai~~ss~a~~~~g  171 (301)
T 3u64_A          111 LRGARYALSSLETAYPGFTR--------EVFSGDEQ----RLHKVLS---R----CTRVDVGTLYWVGTGYVAAFALTPL  171 (301)
T ss_dssp             HHHHHHHHHHHHHHSTTHHH--------HHTSSCHH----HHHHHHT---T----CCGGGHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHHHhCccHHH--------HHHhcchh----hHHHHHH---H----cCccccHHHHHHHHHHHHHHhcCCC
Confidence            66655443332222221111        11122111    1122221   1    233444445555444322       


Q ss_pred             ----cccHHHHHHHHHHHHHHHHHcCCChh--HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812          304 ----LEEHQKALEQNELSQKVLKTWGLSSE--LLRAEIDAANMQIAL-----GKFEEAINTLKGVVRQTEKESETRALVF  372 (630)
Q Consensus       304 ----~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~  372 (630)
                          .+....|...+++++++      +|.  ...++..+|.+|...     |+.++|..+|++++++.+....   ..+
T Consensus       172 g~~Al~~l~~A~a~lerAleL------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i---d~~  242 (301)
T 3u64_A          172 GSALPDTVHAAVMMLERACDL------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP---DHH  242 (301)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHH------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS---HHH
T ss_pred             ChHHHHhHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc---hHH
Confidence                23467788888888887      555  677999999999995     9999999999999998775422   278


Q ss_pred             HHHHHHHHh-hccHHHHHHHHHHHHHHHHh
Q 006812          373 ISMGKALCN-QEKFADAKRCLEIACGILDK  401 (630)
Q Consensus       373 ~~la~~~~~-~~~~~~A~~~~~~a~~~~~~  401 (630)
                      +..|..++. .|+++++..++++++..-..
T Consensus       243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          243 ITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            888998888 59999999999999886543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.36  E-value=4.4e-07  Score=68.43  Aligned_cols=60  Identities=22%  Similarity=0.164  Sum_probs=44.4

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY-IYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      ...|..+...|++++|+..|+++++.        .|.... ++..+|.+|...|++++|+.+|++++.+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            45677777788888888888887773        344555 7777888888888888888888888774

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.35  E-value=0.00016  Score=68.38  Aligned_cols=214  Identities=11%  Similarity=-0.010  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHcCCCh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-LEEHQKALEQNELSQKVLKTWGLSS  328 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~  328 (630)
                      .+...||.+|...|++++-.+++..........   .....+.....+-..+.. .+..+.-++....+++..+......
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f   96 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF   96 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999988887766555432   223445555555555544 3445555666666666655432222


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812          329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS  406 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  406 (630)
                      -....-..+|.+|+..|+|.+|...+.+..+.....  ......++..-..+|...+++.++...+.++........ .+
T Consensus        97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~-~~  175 (394)
T 3txn_A           97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY-CP  175 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CC
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC-CC
Confidence            233355689999999999999999999999876652  345577788889999999999999999999988876542 23


Q ss_pred             cHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhh
Q 006812          407 PEEVADAYSEISMQYE-SMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQ  470 (630)
Q Consensus       407 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~  470 (630)
                      +...+.....-|.++. ..++|..|..+|-++..-+....   .+. ..+...++.+-...++..+
T Consensus       176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~r~e  238 (394)
T 3txn_A          176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQSDD  238 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCCHHH
Confidence            3345666677788888 89999999999999876654331   122 2333344444445555433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.31  E-value=7.2e-06  Score=62.09  Aligned_cols=71  Identities=17%  Similarity=0.103  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      +.-++.+|..++..+ +|..|+.+|++|++..+..  . ......+.++..+|.++.++|++++|+.++++++.+
T Consensus         5 a~dc~~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~--~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEA-DYYHTELWMEQALRQLDEG--E-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT--C-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc-chHHHHHHHHHHHHhhhcc--C-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            456789999999999 9999999999999987543  1 123457788899999999999999999999999998

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.27  E-value=2.1e-05  Score=59.44  Aligned_cols=82  Identities=15%  Similarity=0.164  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      .-++.+|..+...|+|..|+.+|++|+...............++..+|.++.++|++++|+.++++++.+     .|++ 
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~~-   79 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEH-   79 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC-
Confidence            4567899999999999999999999999876543223345678999999999999999999999999983     3343 


Q ss_pred             cHHHHHHHHH
Q 006812          492 GVGYIYNNLG  501 (630)
Q Consensus       492 ~~~~~~~~l~  501 (630)
                        ..++.+++
T Consensus        80 --~~~~~n~~   87 (104)
T 2v5f_A           80 --QRANGNLK   87 (104)
T ss_dssp             --HHHHHHHH
T ss_pred             --HHHHhhHH
Confidence              44555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.24  E-value=0.00013  Score=64.66  Aligned_cols=105  Identities=18%  Similarity=0.139  Sum_probs=80.3

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHHHHHhcCCCCHHH-HHHH
Q 006812          468 VPQAIPYLESAAERLKESFGPKHFG--VGYIYNNLGAAYLEL-----DRPQSAAQVFAFAKDIMDVSLGPHHADS-IEAC  539 (630)
Q Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~  539 (630)
                      ..+|...+++++++        +|.  ...++..+|.+|...     |+.++|..+|++|+++.        |+. ..++
T Consensus       179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------P~~~id~~  242 (301)
T 3u64_A          179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------SAHDPDHH  242 (301)
T ss_dssp             HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------CTTCSHHH
T ss_pred             HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------CCCCchHH
Confidence            35677788888874        244  566899999999995     99999999999999964        432 5788


Q ss_pred             HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCCCch----hHHHHHHHHHHHHH
Q 006812          540 QNLSKAYSS-MGSYTLAIEFQQRAIDAWESHGPSAQ----DELREARRLLEQLK  588 (630)
Q Consensus       540 ~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~A~~~~~~~~  588 (630)
                      +..|..++. .|++++|..++++++..-....|+..    +.-++|..++.++.
T Consensus       243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~  296 (301)
T 3u64_A          243 ITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQ  296 (301)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence            889999988 49999999999999987666544422    44556666665544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.21  E-value=8.1e-06  Score=61.31  Aligned_cols=87  Identities=11%  Similarity=-0.037  Sum_probs=70.5

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812          295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR-AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI  373 (630)
Q Consensus       295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~  373 (630)
                      ...|..+...|++++|+..++++++.      .|.... ++..+|.+|...|++++|+..|++++...+.+...    +.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~   73 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL----QA   73 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH----HH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH----HH
Confidence            45788999999999999999999887      666677 99999999999999999999999999987765442    21


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGIL  399 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~  399 (630)
                      .        +.+.++..+|+++....
T Consensus        74 ~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           74 R--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             H--------HHHHHHHHHHCCTTHHH
T ss_pred             H--------HHHHHHHHHHHHHhccC
Confidence            1        56677777777665554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.01  E-value=9.6e-05  Score=58.98  Aligned_cols=127  Identities=11%  Similarity=-0.024  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812          411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP  488 (630)
Q Consensus       411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (630)
                      ..++..-...+...|.|+.|+-....++.+.....+.-.|.  ..++..+|.+++..|+|..|...|++++...+.+...
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            34555566677889999999999999988876654433333  5677999999999999999999999999987643211


Q ss_pred             -----------------CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812          489 -----------------KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY  546 (630)
Q Consensus       489 -----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  546 (630)
                                       +.+...++.+.++.||...|++++|+..++..-.-      ...|   .+...||.+|
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k------~Rt~---kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR------QRTP---KINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG------GCCH---HHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch------hcCH---HHHHHHHHHh
Confidence                             11233468889999999999999999987754211      0223   5666667665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.99  E-value=0.00031  Score=56.11  Aligned_cols=125  Identities=14%  Similarity=0.093  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC-
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETI-SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ-  448 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-  448 (630)
                      ++..-...+...|.|+.|+-....++.+....... .+.....++..+|..++..++|..|...|++++...+.+.... 
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44555666777888999988888888877544322 3445678899999999999999999999999999887543221 


Q ss_pred             -----------------CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812          449 -----------------HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY  504 (630)
Q Consensus       449 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  504 (630)
                                       ..++.+.+.++.||.+.|++++|+..++..-         ....+..+...||.+|
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip---------~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP---------SRQRTPKINMLLANLY  165 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC---------GGGCCHHHHHHHHHHC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC---------chhcCHHHHHHHHHHh
Confidence                             1224677999999999999999999876432         1223344555666655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.98  E-value=0.00018  Score=66.72  Aligned_cols=132  Identities=14%  Similarity=0.067  Sum_probs=80.7

Q ss_pred             HhhHHHhhc---cChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHH
Q 006812          162 VMGSANYSF---KRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM---G-RREEALEHLQKCL  234 (630)
Q Consensus       162 ~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~al  234 (630)
                      ..|..+...   ..+.+|+.+|++|+++                .|..+.++-.++.+|...   + ..........+++
T Consensus       201 Lra~~~l~~~~~~~~~~A~~l~e~Al~l----------------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          201 YQAHDYLLHGDDKSLNRASELLGEIVQS----------------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHHHHHHHHCSHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            344444443   3468899999999998                344444555555555421   1 1112222233333


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812          235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN  314 (630)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  314 (630)
                      ......  ...|..+.++..++..+...|++++|+..+++++.+.+      +   +..+..+|.++...|++++|++.|
T Consensus       265 ~a~~a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~------s---~~a~~llG~~~~~~G~~~eA~e~~  333 (372)
T 3ly7_A          265 DNIVTL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM------S---WLNYVLLGKVYEMKGMNREAADAY  333 (372)
T ss_dssp             HHHHTC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------C---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------C---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            321111  33344566777777777777888888888888887621      1   345567788888888888888888


Q ss_pred             HHHHHH
Q 006812          315 ELSQKV  320 (630)
Q Consensus       315 ~~a~~~  320 (630)
                      ++|+.+
T Consensus       334 ~~AlrL  339 (372)
T 3ly7_A          334 LTAFNL  339 (372)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            887776

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.96  E-value=0.00022  Score=56.71  Aligned_cols=82  Identities=5%  Similarity=-0.055  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 006812          469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD---RPQSAAQVFAFAKDIMDVSLGPHHA-DSIEACQNLSK  544 (630)
Q Consensus       469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~  544 (630)
                      ..+.+.|.+.++        ..+....+.+++|.++.+.+   +.++++.+++..++.       +.| ...+++++||.
T Consensus        15 ~~~~~~y~~e~~--------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv   79 (152)
T 1pc2_A           15 LKFEKKFQSEKA--------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAV   79 (152)
T ss_dssp             HHHHHHHHHHHH--------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHH
Confidence            344555555544        23356678999999999988   667999999998883       236 56789999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHH
Q 006812          545 AYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       545 ~~~~~g~~~~A~~~~~~al~~  565 (630)
                      .|.+.|+|++|.+++++++++
T Consensus        80 ~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           80 GNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhc
Confidence            999999999999999999987

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.95  E-value=0.00067  Score=62.98  Aligned_cols=122  Identities=8%  Similarity=-0.021  Sum_probs=82.4

Q ss_pred             CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812          346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK----FADAKRCLEIACGILDKKETISPEEVADAYSEISMQY  421 (630)
Q Consensus       346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  421 (630)
                      ...+|+.+|+++++..|....    ++..++.+|.....    .......+..++......  ...+..+.++..++..+
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~----A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~--~~~~~~a~~~~alal~~  287 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTY----ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL--PELNNLSIIYQIKAVSA  287 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC--GGGTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc--ccCCcCHHHHHHHHHHH
Confidence            357899999999997665543    44444444432111    112222233333322111  11234567888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812          422 ESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAER  481 (630)
Q Consensus       422 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (630)
                      ...|++++|+..+++++.+     +   +....+..+|.++...|++++|++.|++|+.+
T Consensus       288 l~~gd~d~A~~~l~rAl~L-----n---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          288 LVKGKTDESYQAINTGIDL-----E---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHTCHHHHHHHHHHHHHH-----C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHhc-----C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            8899999999999999997     2   23457788999999999999999999999994

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.89  E-value=4.9e-05  Score=55.68  Aligned_cols=70  Identities=9%  Similarity=-0.043  Sum_probs=59.8

Q ss_pred             ccHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          491 FGVGYIYNNLGAAYLELDR---PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       491 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      |..+..+..+|.+++..++   .++|...+++++.        .+|+...++..+|..+...|+|++|+.+|+++++...
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--------LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--------HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5556788899999987666   7999999999999        4567778999999999999999999999999987543


Q ss_pred             H
Q 006812          568 S  568 (630)
Q Consensus       568 ~  568 (630)
                      .
T Consensus        75 ~   75 (93)
T 3bee_A           75 P   75 (93)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.78  E-value=0.00014  Score=53.23  Aligned_cols=67  Identities=16%  Similarity=0.007  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          291 AHDRRLLGVIYSGLEE---HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                      ...+..+|.+++..++   .++|..++++++.+      +|....++..+|..++..|+|++|+.+++++++..+.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4556667888765555   79999999999998      8999999999999999999999999999999987766

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.77  E-value=0.00077  Score=53.54  Aligned_cols=82  Identities=12%  Similarity=0.021  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC---ChhhHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHH
Q 006812          428 ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG---KVPQAIPYLESAAERLKESFGPKHF-GVGYIYNNLGAA  503 (630)
Q Consensus       428 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~  503 (630)
                      ..+.+.|.+.+..       .++...+.+++|+++.+.+   +.++++.+++..++.       +.| ...+++++||..
T Consensus        15 ~~~~~~y~~e~~~-------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~   80 (152)
T 1pc2_A           15 LKFEKKFQSEKAA-------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVG   80 (152)
T ss_dssp             HHHHHHHHHHHHT-------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc-------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHH
Confidence            4455555555441       2245678899999999988   667999999998882       224 567899999999


Q ss_pred             HHHcCChhHHHHHHHHHHHH
Q 006812          504 YLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       504 ~~~~g~~~~A~~~~~~al~~  523 (630)
                      +++.|+|++|..++++++++
T Consensus        81 ~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           81 NYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             HHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhc
Confidence            99999999999999999995

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.011  Score=57.81  Aligned_cols=215  Identities=12%  Similarity=-0.018  Sum_probs=131.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH-hh
Q 006812          304 LEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC-NQ  382 (630)
Q Consensus       304 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-~~  382 (630)
                      .|+++.|++-+....+..+...+......+...+..++...|+++...+++.-............. .......-+. ..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~-~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ-YMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH-HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcC
Confidence            367888887664433333334444667788888999999999999887766543332222111111 1111111111 11


Q ss_pred             ccHHHHHHHHHHHHHHHHh-hcCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc--hhHHHHH
Q 006812          383 EKFADAKRCLEIACGILDK-KETI--SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS--EGSVSAR  457 (630)
Q Consensus       383 ~~~~~A~~~~~~a~~~~~~-~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~  457 (630)
                      ...+..  .....+..... ..+.  -....+.....|+.+|...|++.+|...+.....-.   .+....  .+.++..
T Consensus       108 ~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et---~~~~~~~~kve~~l~  182 (445)
T 4b4t_P          108 KSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET---YGSMEMSEKIQFILE  182 (445)
T ss_dssp             CTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CSSSCHHHHHHHHHH
T ss_pred             CchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHH
Confidence            111111  11111111111 1111  112356677889999999999999999998865422   222222  2567788


Q ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812          458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF-GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDV  526 (630)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  526 (630)
                      ...+|...+++.+|...+.++.......  ..+| .....+...|.++...++|.+|..+|.++......
T Consensus       183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          183 QMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            8999999999999999999986544332  2233 34556778899999999999999999999876543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.031  Score=54.57  Aligned_cols=214  Identities=13%  Similarity=-0.016  Sum_probs=133.4

Q ss_pred             cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006812          263 LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI  342 (630)
Q Consensus       263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  342 (630)
                      |++++|++-+....+..+  .+.+......++..+..++...|+++...+++..   +.+..|..............-|.
T Consensus        30 ~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~---Lskkr~qlk~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL---LSKKHGQLKLSIQYMIQKVMEYL  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH---HHTTTTTSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHH
Confidence            567778776543333332  2334445566777888889999999887665532   22333333333333332222222


Q ss_pred             H-cCCHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812          343 A-LGKFEEAINTLKGVVRQTEK-------ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY  414 (630)
Q Consensus       343 ~-~g~~~~A~~~~~~~l~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  414 (630)
                      . ....+.  ......+.....       .....+.....|+.+|...|++.+|...+.....-..  ...+.......+
T Consensus       105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~--~~~~~~~kve~~  180 (445)
T 4b4t_P          105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY--GSMEMSEKIQFI  180 (445)
T ss_dssp             HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--SSSCHHHHHHHH
T ss_pred             hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--hcccHHHHHHHH
Confidence            1 222221  111222222111       0123466778899999999999999999887643221  122334567788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                      .....+|...+++.+|...+.++.................+...|.++...++|.+|-.+|..++......
T Consensus       181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~  251 (445)
T 4b4t_P          181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK  251 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence            88999999999999999999998654444432222225566888999999999999999999998865443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.03  E-value=0.013  Score=45.69  Aligned_cols=120  Identities=16%  Similarity=0.075  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHcCCh------hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812          452 GSVSARIGWLLLLTGKV------PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  525 (630)
                      ...|........+.|+.      ++-++.|++|+..............+..+...+.. ...++.++|.+.|+.++.+. 
T Consensus        13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h-   90 (161)
T 4h7y_A           13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC-   90 (161)
T ss_dssp             HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh-
Confidence            35677777777777888      77778888887753222112344456666677755 56799999999999999962 


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 006812          526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLL  584 (630)
Q Consensus       526 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~  584 (630)
                             ...+.++...|..-.++|+...|.+.+.+|+.    .++.....++.|++-+
T Consensus        91 -------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG----~~~k~~~~le~a~~nl  138 (161)
T 4h7y_A           91 -------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE----RGAVPLEMLEIALRNL  138 (161)
T ss_dssp             -------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCBCHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCCCcHHHHHHHHHhh
Confidence                   12278899999999999999999999999997    4454444455555444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.93  E-value=0.023  Score=44.38  Aligned_cols=110  Identities=11%  Similarity=0.021  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812          250 VANRDLAEAFVAVLNF------KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT  323 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  323 (630)
                      +.+..........|+.      ++-++.|++|+...+..........+..+...+.. ...++.++|.+.|+.++.+   
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---   89 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---   89 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence            3444445555555887      78888899888766543222344566666666654 5668999999999999886   


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                       +..  .+.++...|..-.++|+...|...+.+++...++...
T Consensus        90 -hKk--FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           90 -CKK--FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             -CTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             -hHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence             222  2888888899999999999999999999997766543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.72  E-value=0.013  Score=44.58  Aligned_cols=67  Identities=4%  Similarity=-0.027  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          492 GVGYIYNNLGAAYLELDRPQS---AAQVFAFAKDIMDVSLGPHHA-DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ....+.+++|+++.+..+...   ++.+++..+       ....| ...+.++.||..+.+.|+|++|..+++..+++
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            455688899999999887665   555555444       33446 56689999999999999999999999999986

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.56  E-value=0.026  Score=59.53  Aligned_cols=105  Identities=11%  Similarity=-0.045  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP  407 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  407 (630)
                      .....+++.+-..|++.|+.++|..++.+..+...........+|+.|...|++.|++++|.+.|++..+.   ...   
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~~---  197 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GLT---  197 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCC---
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC---
Confidence            44556777788888888888888888877665433222223677778888888888888888877765322   111   


Q ss_pred             HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 006812          408 EEVADAYSEISMQYESMNE-FETAISLLKRTLA  439 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~  439 (630)
                      | ...+|+.+-..+.+.|+ .++|.++++++.+
T Consensus       198 P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          198 P-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             C-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             C-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            1 22566667677777776 4677777777665

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.036  Score=53.94  Aligned_cols=105  Identities=5%  Similarity=-0.033  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ..++..+|..|...|++++|.+.|.++....   .  ........+..+..++...+++..+..++.++..+....   .
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~--~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~---~  202 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---I--STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG---G  202 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---T--CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---C
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---C--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC---C
Confidence            3467899999999999999999999977633   2  234567788899999999999999999999998876542   2


Q ss_pred             CHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          532 HADS-IEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       532 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      +++. ......-|.++...++|.+|..+|-.+..
T Consensus       203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence            3333 34455567778889999999999987754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.03  Score=54.46  Aligned_cols=111  Identities=14%  Similarity=-0.029  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812          248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS  327 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  327 (630)
                      ...++..+|..|...|++++|.+.|.++......     .......+..+..++...+++..+..++.++..+....++.
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~  204 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW  204 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence            3557888999999999999999999998876542     23456677788889999999999999999998887766655


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK  363 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  363 (630)
                      ..........|.++...++|.+|...|..+......
T Consensus       205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            545556666788888999999999999888765543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.43  E-value=0.013  Score=44.59  Aligned_cols=82  Identities=13%  Similarity=-0.021  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh---HHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHH
Q 006812          428 ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ---AIPYLESAAERLKESFGPKHF-GVGYIYNNLGAA  503 (630)
Q Consensus       428 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~  503 (630)
                      ..+...|.+.+..     +  .+...+.+++|+++.+..+...   ++.+++..+.       .+.| ..-.+++.||..
T Consensus        18 ~~~~~~y~~e~~~-----~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~LAvg   83 (126)
T 1nzn_A           18 LKFEKKFQSEKAA-----G--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVG   83 (126)
T ss_dssp             HHHHHHHHHHHHH-----S--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-----C--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHH
Confidence            3445555555442     2  2445688999999999877655   6666655544       3435 677899999999


Q ss_pred             HHHcCChhHHHHHHHHHHHH
Q 006812          504 YLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       504 ~~~~g~~~~A~~~~~~al~~  523 (630)
                      +++.|+|++|..+++..+++
T Consensus        84 ~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           84 NYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHh
Confidence            99999999999999999995

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.31  E-value=0.033  Score=58.82  Aligned_cols=105  Identities=9%  Similarity=-0.101  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP  488 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (630)
                      ..-.+|+.+-..|++.|+.++|..++.+...+....   ..|++.+|+.|...|.+.|+.++|.++|++..+     .| 
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-----~G-  195 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-----AG-  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TT-
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cC-
Confidence            455688999999999999999999998876543222   245677999999999999999999999998876     12 


Q ss_pred             CCccHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHH
Q 006812          489 KHFGVGYIYNNLGAAYLELDRP-QSAAQVFAFAKDI  523 (630)
Q Consensus       489 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~  523 (630)
                      -.| ...+|+.+-.++.+.|+. ++|.++|+++.+.
T Consensus       196 ~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          196 LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            234 455888899999999985 7888999988763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.70  E-value=0.18  Score=54.21  Aligned_cols=75  Identities=16%  Similarity=0.224  Sum_probs=51.2

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 006812          295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFIS  374 (630)
Q Consensus       295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  374 (630)
                      ..+...+...|.+++|+...+           ++.      ....+....|++++|.+..+..      +.   ...|..
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~-----------~~~------~~f~~~l~~~~~~~A~~~~~~~------~~---~~~W~~  686 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP-----------DQD------QKFELALKVGQLTLARDLLTDE------SA---EMKWRA  686 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC-----------CHH------HHHHHHHHHTCHHHHHHHHTTC------CC---HHHHHH
T ss_pred             HHHHHHHHhCCChHHheecCC-----------Ccc------hheehhhhcCCHHHHHHHHHhh------Cc---HhHHHH
Confidence            345566677788887776442           111      1123456789999888876432      11   348889


Q ss_pred             HHHHHHhhccHHHHHHHHHHH
Q 006812          375 MGKALCNQEKFADAKRCLEIA  395 (630)
Q Consensus       375 la~~~~~~~~~~~A~~~~~~a  395 (630)
                      +|..+...++++.|+.+|.++
T Consensus       687 la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          687 LGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHc
Confidence            999999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.63  E-value=0.29  Score=52.55  Aligned_cols=164  Identities=14%  Similarity=0.051  Sum_probs=88.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY  414 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  414 (630)
                      ..++..+...|.+++|+...+..        ..    -   .......|++++|.+..+..             .....|
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~----~---f~~~l~~~~~~~A~~~~~~~-------------~~~~~W  684 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQ--------DQ----K---FELALKVGQLTLARDLLTDE-------------SAEMKW  684 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCH--------HH----H---HHHHHHHTCHHHHHHHHTTC-------------CCHHHH
T ss_pred             HHHHHHHHhCCChHHheecCCCc--------ch----h---eehhhhcCCHHHHHHHHHhh-------------CcHhHH
Confidence            44556667788888877655321        11    0   12345678888887764321             223678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHH
Q 006812          415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG  494 (630)
Q Consensus       415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  494 (630)
                      ..+|..+...|+++.|+.+|.++-+.               ..+..++...|+.+....+.+.+..       ....   
T Consensus       685 ~~la~~al~~~~~~~A~~~y~~~~d~---------------~~l~~l~~~~~~~~~~~~~~~~a~~-------~~~~---  739 (814)
T 3mkq_A          685 RALGDASLQRFNFKLAIEAFTNAHDL---------------ESLFLLHSSFNNKEGLVTLAKDAET-------TGKF---  739 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTCH---------------HHHHHHHHHTTCHHHHHHHHHHHHH-------TTCH---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCh---------------hhhHHHHHHcCCHHHHHHHHHHHHH-------cCch---
Confidence            89999999999999999999876321               2233344445555443333322222       0111   


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAF------AKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA  555 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  555 (630)
                         ..-..+|...|++++|+++|.+      |+.+.+.. ++.......+....+.-+...|+.+.|
T Consensus       740 ---~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~-~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          740 ---NLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTY-GLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             ---HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhccchhHH
Confidence               1112245556666666666543      33333331 221111445556666666777765433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.58  E-value=0.18  Score=38.58  Aligned_cols=68  Identities=10%  Similarity=0.002  Sum_probs=53.4

Q ss_pred             CchhHHHHHHHHHHHHcCCh---hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          449 HSEGSVSARIGWLLLLTGKV---PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      ++...+.+++|+++.+..+.   .+++.+++..+.       .......++++.||..+.+.|+|++|..+.+..+++
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            34556889999999987664   457777776665       122356789999999999999999999999999883

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.43  Score=38.96  Aligned_cols=24  Identities=21%  Similarity=0.008  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          209 VHLELANVKTAMGRREEALEHLQK  232 (630)
Q Consensus       209 ~~~~l~~~~~~~g~~~~A~~~~~~  232 (630)
                      .|..||......|+++-|+.+|.+
T Consensus        36 ~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           36 TWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHH
Confidence            344555555555555555555554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.16  E-value=0.41  Score=37.18  Aligned_cols=68  Identities=10%  Similarity=0.002  Sum_probs=53.9

Q ss_pred             CchhHHHHHHHHHHHHcCChh---hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          449 HSEGSVSARIGWLLLLTGKVP---QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      .+...+.+++|+++.+..+..   +++.+++..+.       ......-++++.||..++++|+|++|..+.+..+++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            455678899999999977654   57777776665       122256778999999999999999999999999984

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.42  E-value=0.16  Score=49.34  Aligned_cols=144  Identities=13%  Similarity=0.034  Sum_probs=61.5

Q ss_pred             HhhccChHHHHHHHHHHH--HHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHHH
Q 006812          167 NYSFKRFSDSLGYLSKAN--RMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC-------LEIK  237 (630)
Q Consensus       167 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------l~~~  237 (630)
                      ++..+++++|..+-...+  .........       ......+.+|+..+.++...|+...........       +...
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrr-------tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~  218 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLR-------SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL  218 (523)
T ss_dssp             ----------------------------------------------------------------CHHHHHHHHTHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHH-------hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH
Confidence            456788888888877655  222222111       123345677887888888888776543222221       1222


Q ss_pred             HH-HhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006812          238 EL-ILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL  316 (630)
Q Consensus       238 ~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  316 (630)
                      +. .+..+....+..++.+-..|...+.|++|..+..++.  ++.. ...+...+..++.+|.++..+++|.+|.+++..
T Consensus       219 rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~  295 (523)
T 4b4t_S          219 KIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIA  295 (523)
T ss_dssp             HHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            22 1223445667888999999999999999999998874  2211 012345677788899999999999999999998


Q ss_pred             HHHH
Q 006812          317 SQKV  320 (630)
Q Consensus       317 a~~~  320 (630)
                      |+..
T Consensus       296 A~rk  299 (523)
T 4b4t_S          296 AIRK  299 (523)
T ss_dssp             HTSS
T ss_pred             HHHh
Confidence            7764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.36  E-value=6.4  Score=41.82  Aligned_cols=174  Identities=13%  Similarity=0.054  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812          366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI--SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK  443 (630)
Q Consensus       366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  443 (630)
                      ....-+++.+|.++...++  ++..++...+.-.....+.  .......+...||.++...++ +++.+.+...+.    
T Consensus       410 ~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~----  482 (963)
T 4ady_A          410 FIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY----  482 (963)
T ss_dssp             HHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh----
Confidence            3456678888888777664  5666666654432100000  011223455678888877766 455666655554    


Q ss_pred             CCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          444 LPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       444 ~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                        ...... ..+-..+|.++.-.|+-+-...++..+.+       ..+. ...-...+|......|+.+.+....+....
T Consensus       483 --dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e-~vrR~aalgLGll~~g~~e~~~~li~~L~~  552 (963)
T 4ady_A          483 --NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHG-NITRGLAVGLALINYGRQELADDLITKMLA  552 (963)
T ss_dssp             --TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCH-HHHHHHHHHHHHHTTTCGGGGHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcH-HHHHHHHHHHHhhhCCChHHHHHHHHHHHh
Confidence              111111 23446788888888886655555555443       1222 222334555556677887777666655443


Q ss_pred             HHHHhcCCCCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          523 IMDVSLGPHHADSI-EACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       523 ~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                      .       .+|... .+...+|..|...|+...-..++..+.
T Consensus       553 ~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          553 S-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             C-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             C-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence            1       344433 345667888888888654444555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.12  E-value=0.45  Score=49.22  Aligned_cols=123  Identities=16%  Similarity=0.114  Sum_probs=80.4

Q ss_pred             cCC-HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH--c-CChhhHHHHHHHHHHHHHHhc---CCC-------
Q 006812          424 MNE-FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL--T-GKVPQAIPYLESAAERLKESF---GPK-------  489 (630)
Q Consensus       424 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~-g~~~~A~~~~~~al~~~~~~~---~~~-------  489 (630)
                      .++ ++.|+.++++....        .|...++...+.+...  . .+--+|+..+.++++-.....   .+.       
T Consensus       261 t~~~~~~a~~~le~L~~~--------~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKK--------DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhh--------CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            444 57788888876553        2333343333333221  2 233457777777765322111   111       


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA  562 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  562 (630)
                      .+.....+...+..+...|+++-|+.+.++|+..        .|....+|+.|+.+|..+|+++.|+-.+..+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            1223345667788888999999999999999984        4666689999999999999999999777665

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.04  E-value=0.58  Score=45.60  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             HhccccHHHHHHHHHHHH--HHHHHcC---CChhHHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHHHh--hh
Q 006812          301 YSGLEEHQKALEQNELSQ--KVLKTWG---LSSELLRAEIDAANMQIALGKFEEAIN----------TLKGVVRQT--EK  363 (630)
Q Consensus       301 ~~~~g~~~~A~~~~~~a~--~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~----------~~~~~l~~~--~~  363 (630)
                      ....+++++|..+-....  ..+....   .+.-.+.+|+..+.++...|+......          .+..+++..  ..
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            345677777777666544  2222221   123345566666777777776655322          222222222  22


Q ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      +....+..++.+-+.|...+.++.|..+..++.  +.... ......+..++.+|.++..+++|.+|.+++..|+..
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            445567788899999999999999999988763  11111 122456778889999999999999999999998864

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.88  E-value=1.7  Score=33.34  Aligned_cols=65  Identities=6%  Similarity=0.004  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          369 ALVFISMGKALCNQEKF---ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      ..+.+++|+++.+..+.   .+++..++..+..       ++...-..++.+|..+.+.|+|++|..+.+..+++
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            55778888888876554   4566666654432       12356688899999999999999999999998885

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.72  E-value=1.4  Score=35.96  Aligned_cols=45  Identities=4%  Similarity=-0.068  Sum_probs=28.6

Q ss_pred             HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          380 CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRT  437 (630)
Q Consensus       380 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  437 (630)
                      ...|+++.|.+..+..             +....|..+|......|+++-|..+|.++
T Consensus        16 L~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            4556666666654431             12256777777777777777777777664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.59  E-value=0.64  Score=44.38  Aligned_cols=102  Identities=14%  Similarity=0.018  Sum_probs=73.8

Q ss_pred             HHcCChhhHHHHHHHHHHHHHHhcCCCC--------------ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812          463 LLTGKVPQAIPYLESAAERLKESFGPKH--------------FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL  528 (630)
Q Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  528 (630)
                      ...|+.+.|...+.+|+.++.--+-++.              .....+...++..+...|++.+|+..+..++.      
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~------  199 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF------  199 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence            3457777777777777775422111110              01123455678888999999999999999877      


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCC
Q 006812          529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGPS  572 (630)
Q Consensus       529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~  572 (630)
                        .+|..-..+..+..++...|+..+|+..|+++.+.+.. +|.+
T Consensus       200 --~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~  242 (388)
T 2ff4_A          200 --EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  242 (388)
T ss_dssp             --HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence              34555578999999999999999999999999887665 5644

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.51  E-value=1.6  Score=45.16  Aligned_cols=122  Identities=6%  Similarity=-0.029  Sum_probs=77.3

Q ss_pred             hcC-HHHHHHHHHHHHHHHhhhcCCCCHHHHHHH--HHHHHHHhccccHHHHHHHHHHHHHHHH----HcCCC-------
Q 006812          262 VLN-FKEALPFGLKALEIHKKGLGHNSVEVAHDR--RLLGVIYSGLEEHQKALEQNELSQKVLK----TWGLS-------  327 (630)
Q Consensus       262 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~-------  327 (630)
                      .|+ ++.|+.++++.....+        .....+  ..++.+.....+--+|+..+.++++-..    .....       
T Consensus       261 t~~~~~~a~~~le~L~~~~p--------~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDP--------IHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCG--------GGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            444 5778888887655322        111111  1122222222345567777776664321    11111       


Q ss_pred             -hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812          328 -SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA  395 (630)
Q Consensus       328 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  395 (630)
                       +.....+...+..+...|+++-|+.+.++++...+..    ..+|..|+.+|..+|+|+.|+-.++..
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse----F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS----FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh----hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence             1122345556888889999999999999999976665    459999999999999999999777654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.45  E-value=4.4  Score=36.81  Aligned_cols=121  Identities=11%  Similarity=-0.086  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812          210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE  289 (630)
Q Consensus       210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  289 (630)
                      +..+..-|.++++|++|++.+.                      .-+..+.+.|++..|-++..-.++...+...+..  
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~----------------------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~--   91 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELIS----------------------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD--   91 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred             HHHHHHHHHHhcCHHHHHHHHH----------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC--
Confidence            3444555555566666655544                      3345555566666666666555655554321111  


Q ss_pred             HHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          290 VAHDRRLLGVIYSGLEEHQ-KALEQNELSQKVLKTWGL-SSELLRAEIDAANMQIALGKFEEAINTLK  355 (630)
Q Consensus       290 ~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~  355 (630)
                       ......+..++.....-+ .=..+.+++++.....+. .......+..+|..|...|++.+|..+|-
T Consensus        92 -~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           92 -DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             -HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence             223334455554432111 224667777787777765 35667788889999999999988888774

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.21  E-value=1.8  Score=33.63  Aligned_cols=69  Identities=10%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812          328 SELLRAEIDAANMQIALGKF---EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGIL  399 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  399 (630)
                      .....+.+++|+++....+.   .+++.+++..+..   .+...-..++.+|..+.+.|+|++|.++.+..+++-
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            44577888889888887765   4677788877763   333445689999999999999999999999987764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.05  E-value=2.1  Score=34.15  Aligned_cols=97  Identities=11%  Similarity=0.007  Sum_probs=66.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HH--------hhcC
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI--LD--------KKET  404 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~--------~~~~  404 (630)
                      ..++.+++-.|.|..++-++..       .+.  +.+.+.-+.+|...+++..|+..++..+.-  .+        +..-
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-------lNT--~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff  107 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-------LNT--CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF  107 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-------CCB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-------cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence            3456667778888877766543       221  335555667888889999999888887621  11        1112


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      .++.+.--.+..+|.++...|+.++|+.++..+...
T Consensus       108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            233344567788999999999999999999987764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.76  E-value=1.7  Score=41.37  Aligned_cols=102  Identities=20%  Similarity=0.129  Sum_probs=74.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCCCC---c--h----------hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          421 YESMNEFETAISLLKRTLALLEKLPQAQH---S--E----------GSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~--~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                      ....|+.+.|...+.+|+.++.-..-...   +  .          ..+...++..+...|++.+|+..+..++.     
T Consensus       125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~-----  199 (388)
T 2ff4_A          125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF-----  199 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence            34467788888888888877532211100   0  0          11234567778899999999999999887     


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812          486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP  530 (630)
Q Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  530 (630)
                         .+|..-..+..+..++...|+..+|+..|+++.....+.+|-
T Consensus       200 ---~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~  241 (388)
T 2ff4_A          200 ---EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI  241 (388)
T ss_dssp             ---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence               346556688899999999999999999999999987766663

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.46  E-value=6.1  Score=35.87  Aligned_cols=167  Identities=12%  Similarity=0.138  Sum_probs=92.3

Q ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812          375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV  454 (630)
Q Consensus       375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  454 (630)
                      +..-|.+++++++|++.+...                      +..+.+.|++..|.++..-.++.+.+...  ..+...
T Consensus        39 l~~Ry~~~~~~~eAidlL~~g----------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~--~~~~~~   94 (312)
T 2wpv_A           39 IANRYVRSKSYEHAIELISQG----------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEV--KVDDIS   94 (312)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CCSHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHH----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCC--CCCHHH
Confidence            344456667777777665443                      33344556666666655555555555422  112234


Q ss_pred             HHHHHHHHHHcCChh-hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHH--------HHH--
Q 006812          455 SARIGWLLLLTGKVP-QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFA--------KDI--  523 (630)
Q Consensus       455 ~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--------l~~--  523 (630)
                      ...+..++.....-+ .=..+.++++....+. +.........+..+|..|...|++.+|..+|-..        .++  
T Consensus        95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~  173 (312)
T 2wpv_A           95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW  173 (312)
T ss_dssp             HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence            455555555433222 2356667777755543 3323344567889999999999999999887421        111  


Q ss_pred             -HHHhcCCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHH
Q 006812          524 -MDVSLGPHHADSIEACQNLS-KAYSSMGSYTLAIEFQQRAIDAW  566 (630)
Q Consensus       524 -~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~  566 (630)
                       +........|.....+...+ ..|...|+...|...+....+..
T Consensus       174 ~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~  218 (312)
T 2wpv_A          174 DWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF  218 (312)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence             11111013344444443333 34567777777777777666554

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=92.11  E-value=5.6  Score=34.68  Aligned_cols=56  Identities=18%  Similarity=0.078  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLALL  441 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  441 (630)
                      .+.|...|+.|..+. ....+.+|.......+.+..|.. .++.++|....+++++-.
T Consensus       172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  228 (260)
T 2npm_A          172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA  228 (260)
T ss_dssp             HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            356888999999999 77777777666666666666655 799999998888877643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=90.74  E-value=19  Score=38.26  Aligned_cols=177  Identities=15%  Similarity=0.073  Sum_probs=93.5

Q ss_pred             hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      ..+-+++.+|.++...++  ++..++...+.-.....+      ..+.......+...||.++.-.++ +++.+.+...+
T Consensus       411 ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~------~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L  481 (963)
T 4ady_A          411 IKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSG------DEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVL  481 (963)
T ss_dssp             HHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCS------CHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCcccccc------ccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence            456678888888877664  677666665543110000      000112233455578888776665 34555555544


Q ss_pred             HHHHHHhccchHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHH
Q 006812          235 EIKELILEEDSREL-GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ  313 (630)
Q Consensus       235 ~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  313 (630)
                      .       .++... ..+-..+|.++.-.|+-+....++..+.+       ..+..+.. ...+|......|+.+.+-..
T Consensus       482 ~-------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~vrR-~aalgLGll~~g~~e~~~~l  546 (963)
T 4ady_A          482 Y-------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNITR-GLAVGLALINYGRQELADDL  546 (963)
T ss_dssp             H-------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHHHH-HHHHHHHHHTTTCGGGGHHH
T ss_pred             h-------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHHHH-HHHHHHHhhhCCChHHHHHH
Confidence            2       222221 24556788888888887666555554442       12332222 22334444455665554443


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          314 NELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVR  359 (630)
Q Consensus       314 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  359 (630)
                      .+    .+....+......+...+|..|...|+...-..++..+..
T Consensus       547 i~----~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~  588 (963)
T 4ady_A          547 IT----KMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS  588 (963)
T ss_dssp             HH----HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             HH----HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence            33    2222222222333455678888899996555556666654

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=90.67  E-value=8.1  Score=33.75  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHH
Q 006812          469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKD  522 (630)
Q Consensus       469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~  522 (630)
                      +.|...|+.|.++....+.+.||-......+.+..|+. +++.++|....++|.+
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  206 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  206 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            57889999999999888899999877777777777766 7999999998888776

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=90.26  E-value=4.8  Score=36.46  Aligned_cols=75  Identities=20%  Similarity=0.044  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCc
Q 006812          496 IYNNLGAAYLEL--DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSA  573 (630)
Q Consensus       496 ~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  573 (630)
                      ++.+||.+-...  .....++..|.+|+...+..++..|.   --|..+|-.+.+.+++.+|+..+.+|-.+...+....
T Consensus       257 ALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~r  333 (472)
T 3re2_A          257 AIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSK  333 (472)
T ss_dssp             HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCG
T ss_pred             hhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCc
Confidence            445555554432  22234899999999999998887665   4677789999999999999999999999998866543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.17  E-value=11  Score=34.49  Aligned_cols=241  Identities=10%  Similarity=0.025  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH
Q 006812          209 VHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV  288 (630)
Q Consensus       209 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  288 (630)
                      .+..++.-|.++++|++|++++...                      +..+.+.|++..|.++..-.++.+.+..-+-..
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~G----------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~   94 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASV----------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG   94 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHH----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence            3444555566666666666654433                      444445555555555555445444433211111


Q ss_pred             HHHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812          289 EVAHDRRLLGVIYSGLEEHQ-KALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE  366 (630)
Q Consensus       289 ~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  366 (630)
                         .....+..++.....-+ .=..+..++++.....+.. ......+..+|..|+..+++.+|..+|--     ..++.
T Consensus        95 ---~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-----g~~~s  166 (336)
T 3lpz_A           95 ---ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-----GTKES  166 (336)
T ss_dssp             ---HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-----SCTTH
T ss_pred             ---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-----cCCch
Confidence               22333444444333211 1244666777776665543 55667777888999988888888877731     11110


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHh-C
Q 006812          367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS-EISMQYESMNEFETAISLLKRTLALLEK-L  444 (630)
Q Consensus       367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~-~  444 (630)
                        +..+..+-.                   +......    +.....+. .....|...++...|...+....+...+ .
T Consensus       167 --~~~~a~mL~-------------------ew~~~~~----~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~  221 (336)
T 3lpz_A          167 --PEVLARMEY-------------------EWYKQDE----SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDN  221 (336)
T ss_dssp             --HHHHHHHHH-------------------HHHHTSC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHH-------------------HHHHhcC----CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcC
Confidence              111211111                   1111110    11222222 2233467788999998887776665422 1


Q ss_pred             CC-------CC------CchhHH--HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812          445 PQ-------AQ------HSEGSV--SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD  508 (630)
Q Consensus       445 ~~-------~~------~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  508 (630)
                      ..       ..      .|....  +..+..+-+..+.    ...|....+.+...+..+.+.....+..+|..|+...
T Consensus       222 p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          222 KGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             TTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred             CCccccccccCCcccccCCCCchHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence            11       00      111111  2233333444454    3556655555555444442266777888888888664

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=89.91  E-value=9.2  Score=33.25  Aligned_cols=56  Identities=14%  Similarity=0.023  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLAL  440 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  440 (630)
                      .+.|...|+.|..+.....++.+|.......+.+..|.. .++.++|....++|++-
T Consensus       172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~  228 (261)
T 3ubw_A          172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  228 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356788999999998877777777766666667766655 79999998887777654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.77  E-value=12  Score=34.28  Aligned_cols=169  Identities=12%  Similarity=0.029  Sum_probs=88.1

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS  453 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  453 (630)
                      .++.-|.+.++|++|++.+......                      +.+.|+...|.++..-.++.+.+..-+  ++..
T Consensus        40 Ti~~Ry~~~k~y~eAidLL~~GA~~----------------------ll~~~Q~~sg~DL~~llvevy~~~~~~--~~~~   95 (336)
T 3lpz_A           40 LVAARYSKQGNWAAAVDILASVSQT----------------------LLRSGQGGSGGDLAVLLVDTFRQAGQR--VDGA   95 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHTTCHHHHHHHHHHHHHHHHHHTCC--CCHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCCC--CCHH
Confidence            3444467778888887765544333                      333344444444443333333332111  1112


Q ss_pred             HHHHHHHHHHHcCChh-hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH--------HHHHHH
Q 006812          454 VSARIGWLLLLTGKVP-QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA--------FAKDIM  524 (630)
Q Consensus       454 ~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~  524 (630)
                      ....+..++.....-+ .=..+.++++....+ .|............+|..|.+.+++.+|..+|-        ...++.
T Consensus        96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL  174 (336)
T 3lpz_A           96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARME  174 (336)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHH
Confidence            3344444444333211 123455666665544 333333444577889999999999999987762        111211


Q ss_pred             HHhcCCCCHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          525 DVSLGPHHADSIEACQNL-SKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       525 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      -+......+.....+... ...|...++...|...+....+...
T Consensus       175 ~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~  218 (336)
T 3lpz_A          175 YEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALV  218 (336)
T ss_dssp             HHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            111112223333333333 3457888999999888877776553

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=89.75  E-value=9  Score=32.90  Aligned_cols=56  Identities=14%  Similarity=0.023  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLAL  440 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  440 (630)
                      .+.|...|+.|..+......+.+|.......+.+..|.. .++.++|....+++++-
T Consensus       146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~  202 (234)
T 2br9_A          146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  202 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356888999999999877777777666666666666555 79999998887777664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.39  E-value=16  Score=40.69  Aligned_cols=100  Identities=18%  Similarity=0.130  Sum_probs=75.3

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHH-----------------HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812          294 RRLLGVIYSGLEEHQKALEQNELSQKVL-----------------KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG  356 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  356 (630)
                      .+.+|.++...|++++|..+|+++..-+                 ............|..+..++...+.++.+++..+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4688999999999999999998763211                 11111122345677888899999999999999999


Q ss_pred             HHHHhhhcchH-HHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812          357 VVRQTEKESET-RALVFISMGKALCNQEKFADAKRCLE  393 (630)
Q Consensus       357 ~l~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~  393 (630)
                      +++....+.+. ....|.++-..+...|+|++|...+.
T Consensus       925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            99877655443 34467888888999999999977664

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=89.32  E-value=7.2  Score=31.17  Aligned_cols=96  Identities=16%  Similarity=0.045  Sum_probs=69.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--Hh--------h
Q 006812          212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI--HK--------K  281 (630)
Q Consensus       212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~--------~  281 (630)
                      .++..++-.|.|..++-.+.+             ...+.+.+.-+.||....+|..|+..++..++-  .+        +
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             hhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            567888889999998877643             112456667788999999999999999998731  11        0


Q ss_pred             hcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          282 GLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                      ..--+..+.-..+..+|.+....|+.++|+.++......
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            111122234456778999999999999999999877654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.09  E-value=1.3  Score=43.50  Aligned_cols=62  Identities=16%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL  234 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  234 (630)
                      -.++..||.+......++.|..+|.+|..+                .|.....++.||.+....|+.-+|+-+|.+++
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~----------------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl  213 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL----------------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh----------------CCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence            347788999999999999999999999998                45556789999999999999999999999988

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=88.93  E-value=11  Score=32.65  Aligned_cols=57  Identities=16%  Similarity=0.034  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLALL  441 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  441 (630)
                      .+.|...|+.|..+......+.+|.......+.+..|.. .++.++|....++|++-.
T Consensus       147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A  204 (248)
T 3uzd_A          147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA  204 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            356788999999999877777777766666666666554 799999988877776643

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.48  E-value=17  Score=34.50  Aligned_cols=146  Identities=14%  Similarity=0.067  Sum_probs=91.8

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC-CCCCccchhhH
Q 006812          128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL-GGSVEDIKPIM  206 (630)
Q Consensus       128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~  206 (630)
                      ..+..+.+|+..+.-+...  -+.  ...+.   .+..+.....+.++|++++++............. +....+.....
T Consensus        54 ~~~~~~~ly~~fi~~f~~k--in~--L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~  126 (393)
T 4b4t_O           54 STPLRLRLYDNFVSKFYDK--INQ--LSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGI  126 (393)
T ss_dssp             SCCCCHHHHHHHHHHHHHH--SCS--HHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSH
T ss_pred             cchHHHHHHHHHHHHHHHh--cCH--HHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhH
Confidence            3444567777776666543  121  11121   2334556677899999999877555444332220 11111122234


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK  280 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  280 (630)
                      ..+...++..|...|+.++|..+++++-.......+.+....+..+...+..|...+++..+....-..+....
T Consensus       127 l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          127 LLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            45667889999999999999999999887776654334445567777788888899999887777666665443

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=88.34  E-value=12  Score=32.62  Aligned_cols=54  Identities=15%  Similarity=0.086  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 006812          386 ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLA  439 (630)
Q Consensus       386 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~  439 (630)
                      +.|...|+.|..+......+.+|.......+.+..|.. .++.++|..+.+++++
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  206 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  206 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            56888999999999877777777766666666666655 7999998887776654

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=88.07  E-value=7.8  Score=35.89  Aligned_cols=74  Identities=7%  Similarity=-0.094  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          496 IYNNLGAAYLELDR--PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       496 ~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                      ++.+||.+-...--  -..++..|.+++...+..++..|.   --|..+|-.+++.+++.+|+..+..|-.+...+...
T Consensus       279 ALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~  354 (550)
T 3u84_A          279 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYC  354 (550)
T ss_dssp             HHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred             hhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence            44455544433211  124889999999999988887665   467778999999999999999999999998886554

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.94  E-value=1.6  Score=42.86  Aligned_cols=62  Identities=15%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                      ..+..||.+......++.|..+|.+|..+.        |.....++.||.+....|+.-+|+-+|-+++.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            367788999999999999999999999987        66778999999999999999999999988875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.75  E-value=6  Score=44.00  Aligned_cols=103  Identities=13%  Similarity=-0.026  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------HhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHH
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALL----------------EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE  476 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  476 (630)
                      ..+.+|.++...|++++|..+|+++-.-.                .............|..+..++.+.|.++.++++.+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34779999999999999999998763211                00001111123456788889999999999999999


Q ss_pred             HHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812          477 SAAERLKESFGPKHFG-VGYIYNNLGAAYLELDRPQSAAQVFAF  519 (630)
Q Consensus       477 ~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  519 (630)
                      .|++.    .+++.+. ....+.++-..+...|+|++|...+..
T Consensus       924 lAi~~----~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          924 LADAS----KETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHH----CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHh----ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            99874    2223333 233577788889999999999877643

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=87.20  E-value=13  Score=31.79  Aligned_cols=56  Identities=23%  Similarity=0.083  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 006812          385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE-SMNEFETAISLLKRTLAL  440 (630)
Q Consensus       385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~  440 (630)
                      .+.|...|+.|..+.....++.||.......+.+..|. -.++.++|....++|++-
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~  205 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE  205 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46788999999999987787777776666666666655 569999998887777653

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=85.30  E-value=13  Score=34.55  Aligned_cols=57  Identities=5%  Similarity=-0.067  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q 006812          511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG  570 (630)
Q Consensus       511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  570 (630)
                      ..++..|++|+...+..++..|.   --|..+|-.+.+.+++.+|+..+.++-.+...+.
T Consensus       281 p~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Yn  337 (489)
T 4gq4_A          281 PDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYN  337 (489)
T ss_dssp             CCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhhcc
Confidence            35778999999999998887664   4677889999999999999999999988777643

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.98  E-value=30  Score=32.85  Aligned_cols=109  Identities=11%  Similarity=0.025  Sum_probs=75.9

Q ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHhcCC---------CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812          459 GWLLLLTGKVPQAIPYLESAAERLKESFGP---------KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  529 (630)
                      ..+.....+.++|.+++++...........         .......+...++..|...|+.++|..+++++-.......+
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            345556778899999988765433322111         11234556678899999999999999999999888777654


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812          530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE  567 (630)
Q Consensus       530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  567 (630)
                      .+.......+...+..|...+++..+....-.++....
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            44445556777778888999999876666555554443

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=82.57  E-value=23  Score=30.60  Aligned_cols=58  Identities=24%  Similarity=0.111  Sum_probs=47.3

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHH
Q 006812          468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~  525 (630)
                      .+.|...|+.|.++....+.+.||-......+.+..|+. +++.++|....++|.+-..
T Consensus       147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai  205 (248)
T 3uzd_A          147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI  205 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            367889999999999888999999877777777777666 7999999998888876443

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=80.50  E-value=27  Score=29.97  Aligned_cols=58  Identities=16%  Similarity=0.031  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHH
Q 006812          468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKDIMD  525 (630)
Q Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~  525 (630)
                      .+.|...|+.|.++....+.+.||-......+.+..|+. +++.++|....++|.+-..
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai  207 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAM  207 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            367889999999999888999999877777777777664 6999999998888876443

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=80.08  E-value=30  Score=30.24  Aligned_cols=96  Identities=11%  Similarity=-0.030  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHh--ccc
Q 006812          177 LGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR----------REEALEHLQKCLEIKELIL--EED  244 (630)
Q Consensus       177 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~  244 (630)
                      ...+...+.+.+...-+.    ..+ . .....+-..|..|.....          .+.|...|++|.++....+  .+.
T Consensus       118 ~~iC~diL~llD~~Lip~----a~~-~-skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pT  191 (268)
T 3efz_A          118 LLESEDVIRIIDDNLLMY----SEE-G-ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPS  191 (268)
T ss_dssp             HHHHHHHHHHHHHHTGGG----CCH-H-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGG
T ss_pred             HHHHHHHHHHHHHhhccc----CCc-h-hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            344555666655543221    111 1 333444455777765432          3678899999999998878  888


Q ss_pred             hHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 006812          245 SRELGVANRDLAEAFV-AVLNFKEALPFGLKALEI  278 (630)
Q Consensus       245 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~  278 (630)
                      +|...-...+.+..|+ -.++.++|..+.++|.+-
T Consensus       192 hPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          192 DPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            8866665666666665 579999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	630
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-11
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 59/402 (14%), Positives = 109/402 (27%), Gaps = 50/402 (12%)

Query: 178 GYLSKANRML--GRLEE-EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234
           G +  A+R    G  E  E     +   +P    V L L+++     R + +       +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 235 EIKE------------LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282
           +                      +E     R         ++    L   L A    +  
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 283 LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI 342
           +      + ++  L  V        +      E     LK          A  +   +  
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK 402
           A G+   AI+  +  V       +     +I++G  L     F  A      A  +    
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLD----AYINLGNVLKEARIFDRAVAAYLRALSL---- 232

Query: 403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL 462
                   A  +  ++  Y      + AI   +R + L    P A  +       +   L
Sbjct: 233 ----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN-------LANAL 281

Query: 463 LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522
              G V +A     +A                   NNL     E    + A +++  A +
Sbjct: 282 KEKGSVAEAEDCYNTAL--------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333

Query: 523 IMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564
           +          +   A  NL+      G    A+   + AI 
Sbjct: 334 V--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 3e-11
 Identities = 55/399 (13%), Positives = 110/399 (27%), Gaps = 51/399 (12%)

Query: 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270
           +ELA+ +   G  E A  H  +    +                 L+           +  
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTG--------VLLLLSSIHFQCRRLDRSAH 54

Query: 271 FGLKALEIHKK--------GLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK 322
           F   A++ +          G  +       +          L+        N  +  V  
Sbjct: 55  FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114

Query: 323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI-SMGKALCN 381
                +          N  +   + +           +  K    +A+    +   A  N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALL 441
                +A+  + +A    +K  T+ P    DAY  +    +    F+ A++   R L+L 
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

Query: 442 EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLG 501
                           +  +    G +  AI     A E       P        Y NL 
Sbjct: 234 PNHAVVHG-------NLACVYYEQGLIDLAIDTYRRAIE-----LQPHFPDA---YCNLA 278

Query: 502 AAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR 561
            A  E      A   +  A                ++  NL+      G+   A+   ++
Sbjct: 279 NALKEKGSVAEAEDCYNTAL--------RLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330

Query: 562 AIDAWESHGPS---------AQDELREARRLLEQ-LKIK 590
           A++ +     +          Q +L+EA    ++ ++I 
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 34/225 (15%)

Query: 201 DIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV 260
            + P     ++ L NV       + A+    + L +               + +LA  + 
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--------VHGNLACVYY 248

Query: 261 AVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320
                  A+    +A+E+                  L           +A +    + ++
Sbjct: 249 EQGLIDLAIDTYRRAIELQP--------HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC 380
             T   S   L      AN++   G  EEA+   +  +    + +        ++   L 
Sbjct: 301 CPTHADSLNNL------ANIKREQGNIEEAVRLYRKALEVFPEFAA----AHSNLASVLQ 350

Query: 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN 425
            Q K  +A    + A         ISP   ADAYS +    + M 
Sbjct: 351 QQGKLQEALMHYKEAI-------RISPTF-ADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 42/257 (16%), Positives = 78/257 (30%), Gaps = 34/257 (13%)

Query: 203 KPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV 262
           +P        L  V  A G    A+ H +K + +    L+        A  +L       
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--------AYINLGNVLKEA 216

Query: 263 LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK 322
             F  A+   L+AL +            A     L  +Y        A++     ++ ++
Sbjct: 217 RIFDRAVAAYLRALSLSPN--------HAVVHGNLACVYYEQGLIDLAID---TYRRAIE 265

Query: 323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ 382
              L      A  + AN     G   EA +          +   T A    ++      Q
Sbjct: 266 ---LQPHFPDAYCNLANALKEKGSVAEAED----CYNTALRLCPTHADSLNNLANIKREQ 318

Query: 383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE 442
               +A R    A         + PE  A A+S ++   +   + + A+   K  + +  
Sbjct: 319 GNIEEAVRLYRKAL-------EVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 443 KLPQAQHSEGSVSARIG 459
               A  + G+    + 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 11/164 (6%)

Query: 82  LEEAFESAKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRAL- 140
           L    + A+  +  +  + +  S      +    L        E G  ++ +    RA+ 
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY---YEQGLIDLAIDTYRRAIE 265

Query: 141 -NVLDKDERNNRPSLLVAM-----CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE-E 193
                 D   N  + L              +A       +DSL  L+   R  G +EE  
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325

Query: 194 GLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237
            L     ++ P   A H  LA+V    G+ +EAL H ++ + I 
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 64.6 bits (155), Expect = 1e-11
 Identities = 51/359 (14%), Positives = 108/359 (30%), Gaps = 21/359 (5%)

Query: 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR 294
           EIK++    +       N   A+  +   N  EA      ALE                 
Sbjct: 1   EIKDI---REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVAT 54

Query: 295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTL 354
            +LG +     E  ++L   + ++++ +   +    L + I  + +  A G  + A  T 
Sbjct: 55  SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 114

Query: 355 KGVVRQTE----KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410
           +   +       ++      +     + L    +  +A+          +   +  P++ 
Sbjct: 115 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI---EVLSSYQPQQQ 171

Query: 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470
               + +     +  + + A S L R   LL           + +        +TG    
Sbjct: 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 231

Query: 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530
           A  +L   A+    +    +  +   + N+  A + L   + A  V     +        
Sbjct: 232 AANWLRHTAKPEFAN----NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--R 285

Query: 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG--PSAQDELREARRLLEQL 587
             +D       L++ Y   G  + A      A+      G       E     + L QL
Sbjct: 286 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 344

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 42/314 (13%), Positives = 85/314 (27%), Gaps = 10/314 (3%)

Query: 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE 267
                L  V    G    +L  +Q+  ++      +       +    +E   A    + 
Sbjct: 52  VATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQT 109

Query: 268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS 327
           A     KA ++  +             R+   +        +A        +VL ++   
Sbjct: 110 AWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169

Query: 328 SELLRAEIDA--ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKF 385
            +L    +    +  +  L      +N L+ ++   +  S+  +                
Sbjct: 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229

Query: 386 ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445
           A A   L        K E  +   +   +  I+     + EFE A  +L+        L 
Sbjct: 230 AAAANWLRHT----AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 285

Query: 446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF-GVGYIYNNLGAAY 504
                       +  L    G+   A   L  A +    +    HF   G          
Sbjct: 286 LMSD-LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 344

Query: 505 LELDRPQSAAQVFA 518
           ++L+      Q  A
Sbjct: 345 IQLNTLPELEQHRA 358

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 52/362 (14%), Positives = 106/362 (29%), Gaps = 26/362 (7%)

Query: 127 GDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186
           G+P+     A  AL  L      +R      +   V+G   +     + SL  + +  +M
Sbjct: 26  GNPDEAERLAKLALEELPPGWFYSR-----IVATSVLGEVLHCKGELTRSLALMQQTEQM 80

Query: 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR 246
             + +                   ++ + +  A G  + A E  +K  ++      E   
Sbjct: 81  ARQHDV----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 130

Query: 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE 306
                 R  A+   A     EA       +E+      +   +      +L        +
Sbjct: 131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS---YQPQQQLQCLAMLIQCSLARGD 187

Query: 307 HQKALEQNELSQKVLKTWG-LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES 365
              A  Q    + +L      S  +  A           G    A N L+   +     +
Sbjct: 188 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 247

Query: 366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN 425
                 + ++ +A     +F  A+  LE      + +      ++      ++  Y    
Sbjct: 248 HFLQGQWRNIARAQILLGEFEPAEIVLEEL--NENARSLRLMSDLNRNLLLLNQLYWQAG 305

Query: 426 EFETAISLLKRTLALLEKLPQAQH--SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK 483
               A  +L   L L  +     H   EG   A+    L+    +P+     +  A+R+ 
Sbjct: 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL---EQHRAQRIL 362

Query: 484 ES 485
             
Sbjct: 363 RE 364

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 37/324 (11%), Positives = 79/324 (24%), Gaps = 31/324 (9%)

Query: 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270
            E    +   G    A+   +  ++     +E        A + L            A+ 
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME--------AWQYLGTTQAENEQELLAIS 74

Query: 271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSEL 330
              + LE+                    +     E  +  L        ++      +  
Sbjct: 75  ALRRCLELKPDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 133

Query: 331 LRAEIDAANMQIAL--GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA 388
                    +   L    F E        VR      +    V   +G       ++  A
Sbjct: 134 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD--VQCGLGVLFNLSGEYDKA 191

Query: 389 KRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448
             C   A  +                    + +  +       +  +  +A   +  + Q
Sbjct: 192 VDCFTAALSV---------------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236

Query: 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV---GYIYNNLGAAYL 505
                    +G   +  G   +A+ +   A    ++S GP+  G      I++ L  A  
Sbjct: 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 296

Query: 506 ELDRPQSAAQVFAFAKDIMDVSLG 529
            L +  +     A     +    G
Sbjct: 297 MLGQSDAYGAADARDLSTLLTMFG 320

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 37/291 (12%), Positives = 83/291 (28%), Gaps = 21/291 (7%)

Query: 201 DIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV 260
              P        L   +    +   A+  L++CLE+K                +  +   
Sbjct: 47  QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 106

Query: 261 AVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320
             +           A  +     G     +   +R+LG +          LE  EL    
Sbjct: 107 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL----SDSLFLEVKELFLAA 162

Query: 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC 380
           ++    +S     +     +    G++++A++     +     +      +  ++     
Sbjct: 163 VRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 221

Query: 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440
           ++E  A  +R LE+  G               +   + +   ++     A+      L +
Sbjct: 222 SEEAVAAYRRALELQPGY------------IRSRYNLGISCINLGAHREAVEHFLEALNM 269

Query: 441 LEKLPQAQHSEGSVSARI----GWLLLLTGKVPQAIPYLESAAERLKESFG 487
             K    +   G++S  I       L + G+              L   FG
Sbjct: 270 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 320

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 41/242 (16%), Positives = 90/242 (37%), Gaps = 12/242 (4%)

Query: 212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPF 271
           + A +         A +   K  + ++    ED  E G    +  + F +  N   A+  
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKAGNED--EAGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 272 GLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELL 331
              A++I     G           L  ++ + L ++ KA++  EL+ +        +   
Sbjct: 100 LENAIQIFTHR-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 332 RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV---FISMGKALCNQEKFADA 388
           +  I  A+++   G++ EA +    +++ +     ++  +   F+  G           A
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218

Query: 389 KRCLEIACGI----LDKKETISPEEVADAYSEISMQY--ESMNEFETAISLLKRTLALLE 442
            R L+          D +E+   + + DA +E   +   E   EF+  + L K  + +L 
Sbjct: 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278

Query: 443 KL 444
           K+
Sbjct: 279 KI 280

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG----YIYNNLGAAYLEL---DRP 510
                L+ G+  +A      A E        + F       + +  L  A   L   D  
Sbjct: 15  DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEA 74

Query: 511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG 570
             +A       +             I A  + + A   +G    A+   ++ ++      
Sbjct: 75  LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI---- 130

Query: 571 PSAQDELREARRLLEQLK 588
              + E     R++E   
Sbjct: 131 EERKGETPGKERMMEVAI 148

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 35/264 (13%), Positives = 69/264 (26%), Gaps = 16/264 (6%)

Query: 332 RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRC 391
           ++E+ A  +Q    + E  +  ++ ++       + RA +    G    +    A A+  
Sbjct: 1   KSEVLAVPLQ-PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 59

Query: 392 LEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE 451
              A  I           +    ++      +   F++ + L             A +  
Sbjct: 60  FSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118

Query: 452 GSVSARIGWLLLL--------TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA 503
           G        LL             +   +   +   ++ KE                   
Sbjct: 119 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 178

Query: 504 YLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563
              L        +     D  D +         E    L K Y S+G    A    + A+
Sbjct: 179 EFYLGNISEQTLMERLKADATDNT--SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236

Query: 564 DAWESHGPSAQDELREARRLLEQL 587
               ++      E R A   L  L
Sbjct: 237 ----ANNVHNFVEHRYALLELSLL 256

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	630
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.94
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.81
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.8
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.76
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.73
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.71
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.7
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.69
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.4
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.39
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.36
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.34
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.33
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.31
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.3
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.3
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.24
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.23
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.22
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.22
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.21
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.2
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.18
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.14
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.04
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.04
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.01
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.0
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.8
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.78
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.56
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.53
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.28
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.26
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.16
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.92
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.28
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.79
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.53
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	94.22
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.86
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	92.32
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	91.36
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.85
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	89.0
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	86.8
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	82.4
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.6
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.33
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	80.85
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	80.6

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-31  Score=261.77  Aligned_cols=360  Identities=18%  Similarity=0.191  Sum_probs=294.0

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC
Q 006812          116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL  195 (630)
Q Consensus       116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  195 (630)
                      +.+|..++..| ++++|+..|+++++..+          ....++..+|.+|...|++++|+.+|++++++         
T Consensus         3 l~la~~~~~~G-~~~~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------   62 (388)
T d1w3ba_           3 MELAHREYQAG-DFEAAERHCMQLWRQEP----------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---------   62 (388)
T ss_dssp             CTHHHHHHHHT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence            45788888888 99999999999987642          33567889999999999999999999999988         


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc--------------------------chHHHH
Q 006812          196 GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEE--------------------------DSRELG  249 (630)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~  249 (630)
                             .|....++..+|.+|..+|++++|+..+..+.+........                          ..+...
T Consensus        63 -------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (388)
T d1w3ba_          63 -------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY  135 (388)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred             -------CCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   33345778899999999999999999999887643211000                          000001


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      ......+......+....+...+.+.+..        .+....++..+|..+...|++++|...+++++.+      .|.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~  201 (388)
T d1w3ba_         136 CVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPN  201 (388)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTT
T ss_pred             cccccccccccccchhhhhHHHHHHhhcc--------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh------Ccc
Confidence            12333444555556666666666665543        2344567888999999999999999999999887      677


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE  409 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  409 (630)
                      ...++..+|.++...|++++|+..++++....+..    ...+..+|.++...|++++|+..+++++++.        |.
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~  269 (388)
T d1w3ba_         202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH----AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PH  269 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SS
T ss_pred             cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CC
Confidence            88899999999999999999999999998865443    4578899999999999999999999998764        45


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812          410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK  489 (630)
Q Consensus       410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (630)
                      ...++..+|.++...|++++|+..+++++..     .  +.....+..+|.++...|++++|+.+|+++++        .
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------~  334 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL-----C--PTHADSLNNLANIKREQGNIEEAVRLYRKALE--------V  334 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--------S
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-----C--CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--------h
Confidence            5678999999999999999999999998875     2  22345789999999999999999999999987        3


Q ss_pred             CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 006812          490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS  551 (630)
Q Consensus       490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  551 (630)
                      +|....++.++|.+|...|++++|+.+|+++++        .+|+...++.+||.+|.++||
T Consensus       335 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCC
Confidence            567788999999999999999999999999998        456667899999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-28  Score=239.58  Aligned_cols=339  Identities=17%  Similarity=0.124  Sum_probs=275.9

Q ss_pred             HhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 006812          162 VMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELIL  241 (630)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  241 (630)
                      .+|..++..|+|++|+..|+++++.                .|....++..+|.++...|++++|+.+|++++++.    
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----   63 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQ----------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----   63 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence            5788999999999999999999987                22334678899999999999999999999998653    


Q ss_pred             ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC-------------CC-------------CHHHHHHHH
Q 006812          242 EEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG-------------HN-------------SVEVAHDRR  295 (630)
Q Consensus       242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~-------------~~~~~~~~~  295 (630)
                          |....++..+|.+|...|++++|+..+..+....+....             ..             .........
T Consensus        64 ----p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (388)
T d1w3ba_          64 ----PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS  139 (388)
T ss_dssp             ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH
T ss_pred             ----CCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                444678999999999999999999999998875332100             00             000001222


Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Q 006812          296 LLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISM  375 (630)
Q Consensus       296 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l  375 (630)
                      ..+......+....+...+.+.+..      .|....++..+|.++...|++++|...+++++...+..    ..++..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l  209 (388)
T d1w3ba_         140 DLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----LDAYINL  209 (388)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHH
T ss_pred             cccccccccchhhhhHHHHHHhhcc------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCccc----HHHHHHH
Confidence            3344455555666666665555443      56677889999999999999999999999999865544    4588999


Q ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHH
Q 006812          376 GKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVS  455 (630)
Q Consensus       376 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  455 (630)
                      |.++...|++++|+..++++....        +.....+..+|.++...|++++|+..|++++++     .+.  ...++
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~--~~~~~  274 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPH--FPDAY  274 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSS--CHHHH
T ss_pred             hhhhhccccHHHHHHHHHHhHHHh--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC--CHHHH
Confidence            999999999999999999987764        344578889999999999999999999999985     222  34688


Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812          456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS  535 (630)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  535 (630)
                      ..+|.++...|++++|+..+++++..        .|.....+..+|.++...|++++|+.+|+++++        .+|+.
T Consensus       275 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------~~p~~  338 (388)
T d1w3ba_         275 CNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--------VFPEF  338 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--------SCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCC
Confidence            99999999999999999999998873        456667889999999999999999999999987        45667


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                      ..++.++|.+|...|++++|+.+|++++++
T Consensus       339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         339 AAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            789999999999999999999999999975

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=7.2e-24  Score=204.59  Aligned_cols=345  Identities=14%  Similarity=0.026  Sum_probs=285.8

Q ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812          109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG  188 (630)
Q Consensus       109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  188 (630)
                      +..+......|.++...| ++++|+.+|++++...+.     ...+..+.++..+|.++...|++++|+..|++++.+..
T Consensus         9 ~~~ae~~~lrA~~~~~~g-~~~~A~~~~~~aL~~~~~-----~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~   82 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDG-NPDEAERLAKLALEELPP-----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR   82 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCT-----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCcC-----CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            344566667899999998 999999999999987633     33345667889999999999999999999999999866


Q ss_pred             HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHH
Q 006812          189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA  268 (630)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  268 (630)
                      ....          .+.....+..++.++...|++..|...+.+++.+.........+..+..+..+|.++...|+++.+
T Consensus        83 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a  152 (366)
T d1hz4a_          83 QHDV----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  152 (366)
T ss_dssp             HTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhh
Confidence            5422          345567788999999999999999999999999998876677777788899999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCH
Q 006812          269 LPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKF  347 (630)
Q Consensus       269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~  347 (630)
                      ...+.+++...+..   .......++..++..+...+++.++...+.++..+....+.. +.....+..++.++...|++
T Consensus       153 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T d1hz4a_         153 EASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK  229 (366)
T ss_dssp             HHHHHHHHHHTTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhhh---hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence            99999999887653   334456778889999999999999999999999988877766 55667788899999999999


Q ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH
Q 006812          348 EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEF  427 (630)
Q Consensus       348 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  427 (630)
                      ++|...+++++...+..+......+..+|.++...|++++|..++++++.......  .++....++..+|.+|...|++
T Consensus       230 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~  307 (366)
T d1hz4a_         230 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRK  307 (366)
T ss_dssp             HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc--cChHHHHHHHHHHHHHHHCCCH
Confidence            99999999998877766666677888999999999999999999999998887643  5578889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCc--hhHHHHHHHHHHHHcCChhhHHHH
Q 006812          428 ETAISLLKRTLALLEKLPQAQHS--EGSVSARIGWLLLLTGKVPQAIPY  474 (630)
Q Consensus       428 ~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~  474 (630)
                      ++|+..+++++.+.+........  ....+..+...+...++.+++...
T Consensus       308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99999999999997765321110  122344555566677888887654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4e-22  Score=192.21  Aligned_cols=313  Identities=15%  Similarity=0.063  Sum_probs=264.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812          248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS  327 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  327 (630)
                      .+......|.++...|++++|+.+++++++..+..   +.+....++..+|.++...|++++|+..|++++.+....+..
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~---~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC---CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence            35667778999999999999999999999865531   333556788899999999999999999999999999888888


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhc
Q 006812          328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE----SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE  403 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  403 (630)
                      +....++..++.++...|++..|...+.+++......    ....+..+..+|.++...|+++.+...+.++........
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~  167 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  167 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence            8889999999999999999999999999999876543    344567888999999999999999999999988765432


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812          404 TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK  483 (630)
Q Consensus       404 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  483 (630)
                         ......++...+..+...+++.++...+.++..+.............++..++.++...|++++|..++++++.+. 
T Consensus       168 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-  243 (366)
T d1hz4a_         168 ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE-  243 (366)
T ss_dssp             ---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC-
T ss_pred             ---hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc-
Confidence               2345677888999999999999999999999998877643332235567889999999999999999999887632 


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                         ...++.....+.++|.++...|++++|...+++++.+....  ...|....++..+|.+|...|++++|.+.+++|+
T Consensus       244 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         244 ---FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             ---CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ---cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence               22345566778899999999999999999999999987764  3567888999999999999999999999999999


Q ss_pred             HHHHHcCCC
Q 006812          564 DAWESHGPS  572 (630)
Q Consensus       564 ~~~~~~~~~  572 (630)
                      ++.+..|..
T Consensus       319 ~l~~~~~~~  327 (366)
T d1hz4a_         319 KLANRTGFI  327 (366)
T ss_dssp             HHHHHHCCC
T ss_pred             HHhhhcCcH
Confidence            998887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-22  Score=191.63  Aligned_cols=286  Identities=12%  Similarity=0.067  Sum_probs=220.9

Q ss_pred             HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      +..|..++..|++++|+..|+++++.                .|....++..+|.++...|++++|+..|.+++++.   
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---   83 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQ----------------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK---   83 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc---
Confidence            56899999999999999999999987                33445788999999999999999999999999654   


Q ss_pred             hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH-HHHHH------HHHHHHHHhccccHHHHHHH
Q 006812          241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV-EVAHD------RRLLGVIYSGLEEHQKALEQ  313 (630)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~------~~~la~~~~~~g~~~~A~~~  313 (630)
                           |.....+..+|.+|...|++++|+..+++++.+.+........ .....      .......+...+.+.+|+..
T Consensus        84 -----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_          84 -----PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHH
T ss_pred             -----cccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHH
Confidence                 3335789999999999999999999999998865432100000 00011      11122234456778889999


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812          314 NELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLE  393 (630)
Q Consensus       314 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  393 (630)
                      +.+++.+    ........++..+|.++...|++++|+..+++++...+.+    +.++..+|.++...|++++|+.+++
T Consensus       159 ~~~al~~----~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         159 FLAAVRL----DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             HHHHHHH----STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHH----hhcccccccchhhHHHHHHHHHHhhhhccccccccccccc----ccchhhhhhcccccccchhHHHHHH
Confidence            8888775    2223346788899999999999999999999999876544    4589999999999999999999999


Q ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch----hHHHHHHHHHHHHcCChh
Q 006812          394 IACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE----GSVSARIGWLLLLTGKVP  469 (630)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~  469 (630)
                      +++++.        |....++..+|.+|...|++++|+.+|++++++.+...+.....    ..++..++.++...|+.+
T Consensus       231 ~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         231 RALELQ--------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHh--------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            999864        45568899999999999999999999999999987764422211    245677888888899988


Q ss_pred             hHHHHHHHHHHHHHHhc
Q 006812          470 QAIPYLESAAERLKESF  486 (630)
Q Consensus       470 ~A~~~~~~al~~~~~~~  486 (630)
                      .+.....+.++...+.+
T Consensus       303 ~~~~~~~~~l~~l~~~~  319 (323)
T d1fcha_         303 AYGAADARDLSTLLTMF  319 (323)
T ss_dssp             GHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHhCHHHHHHHh
Confidence            88777666665544443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.5e-22  Score=188.33  Aligned_cols=281  Identities=15%  Similarity=0.089  Sum_probs=220.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHH
Q 006812          252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELL  331 (630)
Q Consensus       252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  331 (630)
                      .+..|..+...|++++|+..|+++++.        +|....++..+|.++...|++++|+.++.+++++      .|...
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~   87 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL------KPDNQ   87 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc------ccccc
Confidence            457899999999999999999999974        3444678999999999999999999999999987      67778


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH-----HHHH------HHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812          332 RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET-----RALV------FISMGKALCNQEKFADAKRCLEIACGILD  400 (630)
Q Consensus       332 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-----~~~~------~~~la~~~~~~~~~~~A~~~~~~a~~~~~  400 (630)
                      ..+..+|.+|...|++++|+..+++++...+.....     ....      .......+...+.+.+|...+.+++.+..
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p  167 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  167 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999876553211     0111      11222344566788899999998887642


Q ss_pred             hhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          401 KKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       401 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ..      ..+.++..+|.++...|++++|+.++++++..     .+.  ...++..+|.++...|++++|+.+|+++++
T Consensus       168 ~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         168 TS------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPN--DYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             TS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cc------cccccchhhHHHHHHHHHHhhhhccccccccc-----ccc--cccchhhhhhcccccccchhHHHHHHHHHH
Confidence            21      22467889999999999999999999999886     222  346889999999999999999999999998


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 006812          481 RLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP---HHADSIEACQNLSKAYSSMGSYTLAIE  557 (630)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~  557 (630)
                      +        +|....++.++|.+|...|++++|+..|++++++.....+.   .......++..++.++...|+.+.+..
T Consensus       235 ~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         235 L--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             H--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4        35567789999999999999999999999999987643221   111112456778888888888877766


Q ss_pred             HHHHHHHHHH
Q 006812          558 FQQRAIDAWE  567 (630)
Q Consensus       558 ~~~~al~~~~  567 (630)
                      ...+.+..+.
T Consensus       307 ~~~~~l~~l~  316 (323)
T d1fcha_         307 ADARDLSTLL  316 (323)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHHhCHHHHH
Confidence            6666665443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.8e-18  Score=157.99  Aligned_cols=262  Identities=8%  Similarity=0.040  Sum_probs=211.1

Q ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH
Q 006812          245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE-EHQKALEQNELSQKVLKT  323 (630)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~  323 (630)
                      .|....++..+|.++...+.+++|+..+++++++.+        ....+++++|.++...| ++++|+.++++++++   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP--------~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA--------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC--------CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            467789999999999999999999999999999744        34578999999999887 599999999999998   


Q ss_pred             cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhc
Q 006812          324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE  403 (630)
Q Consensus       324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  403 (630)
                         +|....++.++|.++..+|++++|+..+.++++..+++    ..+|.++|.++...|++++|+.++++++++.    
T Consensus       108 ---~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n----~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~----  176 (315)
T d2h6fa1         108 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKED----  176 (315)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----
T ss_pred             ---HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC----
Confidence               88899999999999999999999999999999976665    4599999999999999999999999999875    


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812          404 TISPEEVADAYSEISMQYESMNE------FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES  477 (630)
Q Consensus       404 ~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (630)
                          |....+|.++|.++...+.      +++|+..+.+++.+     .+.  ...++..++.++... ..+++...+++
T Consensus       177 ----p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~-----~P~--~~~~~~~l~~ll~~~-~~~~~~~~~~~  244 (315)
T d2h6fa1         177 ----VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPH--NESAWNYLKGILQDR-GLSKYPNLLNQ  244 (315)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STT--CHHHHHHHHHHHTTT-CGGGCHHHHHH
T ss_pred             ----CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh-----CCC--chHHHHHHHHHHHhc-ChHHHHHHHHH
Confidence                4566789999999887765      68899999999987     222  345788888886554 46889999998


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812          478 AAERLKESFGPKHFGVGYIYNNLGAAYLE--LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY  546 (630)
Q Consensus       478 al~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  546 (630)
                      ++++.     ++ +....++..++.+|..  .++.+.+...+.+++++........+|.....|..++..+
T Consensus       245 ~~~l~-----~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l  309 (315)
T d2h6fa1         245 LLDLQ-----PS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL  309 (315)
T ss_dssp             HHHHT-----TT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHHhC-----CC-cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            88752     22 2334466677777754  3778889999999988766543334454444555555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.7e-18  Score=158.76  Aligned_cols=261  Identities=11%  Similarity=0.019  Sum_probs=209.6

Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhh
Q 006812          203 KPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKK  281 (630)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~  281 (630)
                      .|....++..+|.++...+.+++|+..+++++++.        |....+++.+|.++...| ++++|+.++++++++.+ 
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-  109 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN--------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-  109 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-
Confidence            56778899999999999999999999999999754        444789999999999987 59999999999998644 


Q ss_pred             hcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 006812          282 GLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQT  361 (630)
Q Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  361 (630)
                             ....++.++|.++..+|++++|+.++.+++++      +|....++.++|.++...|++++|+..++++++..
T Consensus       110 -------~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~  176 (315)
T d2h6fa1         110 -------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED  176 (315)
T ss_dssp             -------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             -------hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence                   34678999999999999999999999999998      88889999999999999999999999999999976


Q ss_pred             hhcchHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812          362 EKESETRALVFISMGKALCNQEK------FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK  435 (630)
Q Consensus       362 ~~~~~~~~~~~~~la~~~~~~~~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  435 (630)
                      +.+    ..+|.++|.++...+.      +++|+..+.+++.+.        |....++..++.++...| .+++...++
T Consensus       177 p~n----~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--------P~~~~~~~~l~~ll~~~~-~~~~~~~~~  243 (315)
T d2h6fa1         177 VRN----NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQDRG-LSKYPNLLN  243 (315)
T ss_dssp             TTC----HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTTTC-GGGCHHHHH
T ss_pred             Ccc----HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--------CCchHHHHHHHHHHHhcC-hHHHHHHHH
Confidence            555    4488999988877655      688999999988875        455678888888866544 578888898


Q ss_pred             HHHHHHHhCCCCCCchhHHHHHHHHHHHH--cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 006812          436 RTLALLEKLPQAQHSEGSVSARIGWLLLL--TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA  503 (630)
Q Consensus       436 ~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  503 (630)
                      +++++.     +.+....++..++.+|..  .++.+.+...+++++++.......-+|.....|..++..
T Consensus       244 ~~~~l~-----~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         244 QLLDLQ-----PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             HHHHHT-----TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHhC-----CCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            888763     222334456677777754  478888999999998876554323344444445454444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.9e-17  Score=149.72  Aligned_cols=227  Identities=15%  Similarity=0.050  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETR  368 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~  368 (630)
                      +..|...|.+|...|++++|+.+|.++.++....++.+....++.++|.+|...|++++|+..+++++.+.....  ...
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            445666788999999999999999999999999888888999999999999999999999999999999876653  344


Q ss_pred             HHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          369 ALVFISMGKALCN-QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       369 ~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                      ..++..+|.++.. .|++++|+.++++++++.....  .++....++.++|.++..+|++++|+.+|++++.........
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            6788899988865 6999999999999999887654  445678899999999999999999999999998875544322


Q ss_pred             CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChhHHHHHHHHHHH
Q 006812          448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE--LDRPQSAAQVFAFAKD  522 (630)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~  522 (630)
                      .......+...+.++...|++..|...+++++++....   ........+..+..++..  .+.+++|+..|.++..
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~---~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF---ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            22223456788999999999999999999988754322   111123345566666654  3457788877765443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=9.6e-17  Score=147.74  Aligned_cols=225  Identities=12%  Similarity=-0.030  Sum_probs=175.6

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      +..|...|.+|...|+|++|+..|.+++++..+..+          .+..+.++.++|.+|..+|++++|+.+|++++++
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~----------~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~  106 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN----------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI  106 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH
Confidence            334555788899999999999999999999776543          3356788999999999999999999999999999


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812          237 KELILEEDSRELGVANRDLAEAFVA-VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE  315 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  315 (630)
                      ....  ........++..+|.+|.. .|++++|+.+|++++++.+..  ...+....++.++|.++..+|+|++|+..|+
T Consensus       107 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~  182 (290)
T d1qqea_         107 FTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYS  182 (290)
T ss_dssp             HHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhc--ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHH
Confidence            9876  5666778889999999865 699999999999999998864  2445677889999999999999999999999


Q ss_pred             HHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH-HHHHHHHHHHHHHh--hccHHHHHHH
Q 006812          316 LSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET-RALVFISMGKALCN--QEKFADAKRC  391 (630)
Q Consensus       316 ~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~--~~~~~~A~~~  391 (630)
                      +++......+.. ......+...+.++...|+++.|...++++++..+..... ....+..+..++..  .+.+++|+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~  262 (290)
T d1qqea_         183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE  262 (290)
T ss_dssp             HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred             HHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            988875444333 4455667788999999999999999999988765443221 13344555555554  3557888777


Q ss_pred             HHHH
Q 006812          392 LEIA  395 (630)
Q Consensus       392 ~~~a  395 (630)
                      |+++
T Consensus       263 y~~~  266 (290)
T d1qqea_         263 FDNF  266 (290)
T ss_dssp             HTTS
T ss_pred             HHHH
Confidence            7643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.2e-17  Score=148.21  Aligned_cols=218  Identities=14%  Similarity=0.035  Sum_probs=156.3

Q ss_pred             CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 006812          264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA  343 (630)
Q Consensus       264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  343 (630)
                      +.+.|+..+++++...    ....+..+.+++.+|.+|...|++++|+..|++++.+      +|+.+.++.++|.+|..
T Consensus        14 ~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l------~p~~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          14 QQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc------CCCCHHHHhhhchHHHH
Confidence            4556666666655421    1134567889999999999999999999999999998      78889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Q 006812          344 LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES  423 (630)
Q Consensus       344 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  423 (630)
                      .|++++|+..|+++++..+.+.    .++.++|.++...|++++|+..+++++++..        ........++..+..
T Consensus        84 ~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_          84 AGNFDAAYEAFDSVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--------NDPFRSLWLYLAEQK  151 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHHHhhhh----hhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc--------ccHHHHHHHHHHHHH
Confidence            9999999999999999876554    4899999999999999999999999988742        222344555666666


Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCC------hhhHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 006812          424 MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGK------VPQAIPYLESAAERLKESFGPKHFGVGYIY  497 (630)
Q Consensus       424 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  497 (630)
                      .+..+.+.........    . ....+.    ..+  +....+.      ++.+...+......        .+....++
T Consensus       152 ~~~~~~~~~~~~~~~~----~-~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  212 (259)
T d1xnfa_         152 LDEKQAKEVLKQHFEK----S-DKEQWG----WNI--VEFYLGNISEQTLMERLKADATDNTSL--------AEHLSETN  212 (259)
T ss_dssp             HCHHHHHHHHHHHHHH----S-CCCSTH----HHH--HHHHTTSSCHHHHHHHHHHHCCSHHHH--------HHHHHHHH
T ss_pred             hhhHHHHHHHHHHhhc----c-chhhhh----hhH--HHHHHHHHHHHHHHHHHHHHHHHhhhc--------CcccHHHH
Confidence            6665554444333322    1 112211    111  2222222      23333333333321        35566788


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHH
Q 006812          498 NNLGAAYLELDRPQSAAQVFAFAKD  522 (630)
Q Consensus       498 ~~l~~~~~~~g~~~~A~~~~~~al~  522 (630)
                      +++|.+|...|++++|+.+|++++.
T Consensus       213 ~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         213 FYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999987

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.9e-18  Score=161.31  Aligned_cols=275  Identities=10%  Similarity=-0.066  Sum_probs=209.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH----------HHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDL----------AEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       213 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                      +.......+..++|+.++++++++.        |+...+++..          +..+...|++++|+.++++++...+  
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~--------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p--  104 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--  104 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC--
Confidence            3333444445589999999998654        2223444433          3445556668899999999987543  


Q ss_pred             cCCCCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHcCCChhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          283 LGHNSVEVAHDRRLLGVIYSGLE--EHQKALEQNELSQKVLKTWGLSSELLRA-EIDAANMQIALGKFEEAINTLKGVVR  359 (630)
Q Consensus       283 ~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~  359 (630)
                            ....++..+|.++...+  ++++|+..+++++.+      +|....+ ....|.++...+.+++|+..+++++.
T Consensus       105 ------k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~  172 (334)
T d1dcea1         105 ------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT  172 (334)
T ss_dssp             ------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred             ------CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH
Confidence                  33466777888777665  589999999999887      5554554 45678899999999999999999998


Q ss_pred             HhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          360 QTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA  439 (630)
Q Consensus       360 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  439 (630)
                      ..+.+    ..+|..+|.++...|++++|...+.+++.+..        ....    ....+...+..+++...+.+++.
T Consensus       173 ~~p~~----~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~----~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         173 RNFSN----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL--------KELE----LVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             TTCCC----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHH--------HHHH----HHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             cCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHH--------HHHH----HHHHHHHhcchhHHHHHHHHHHH
Confidence            65544    45899999999999999999998888887763        2222    23334556778889999998876


Q ss_pred             HHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812          440 LLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF  519 (630)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  519 (630)
                      ..       ......+..+|.++...|++.+|+..+.+++.        .+|....++..+|.++...|++++|+.+|++
T Consensus       237 ~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~  301 (334)
T d1dcea1         237 GR-------AEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEKETLQYFST  301 (334)
T ss_dssp             SC-------CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred             hC-------cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            41       11223456778888899999999999998886        6788999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812          520 AKDIMDVSLGPHHADSIEACQNLSKAYSS  548 (630)
Q Consensus       520 al~~~~~~~~~~~~~~~~~~~~la~~~~~  548 (630)
                      ++++        +|.....|..|+..+..
T Consensus       302 ai~l--------dP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         302 LKAV--------DPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHH--------CGGGHHHHHHHHHHHHH
T ss_pred             HHHH--------CcccHHHHHHHHHHHhH
Confidence            9984        57777788888887764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.3e-16  Score=143.18  Aligned_cols=212  Identities=12%  Similarity=0.029  Sum_probs=147.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      .++..+.+++.+|.+|...| ++++|+..|++++.+.+          ..+.+++.+|.+|..+|++++|+..|++++.+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g-~~~~A~~~~~~al~l~p----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLG-LRALARNDFSQALAIRP----------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHhhccCC----------CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence            34667889999999999999 99999999999998752          34678899999999999999999999999998


Q ss_pred             HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812          187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK  266 (630)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (630)
                                      .|....+++.+|.++..+|++++|+..|++++++.+     .+   ......++.++...+..+
T Consensus       101 ----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~---~~~~~~~~~~~~~~~~~~  156 (259)
T d1xnfa_         101 ----------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-----ND---PFRSLWLYLAEQKLDEKQ  156 (259)
T ss_dssp             ----------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHHHCHHH
T ss_pred             ----------------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-----cc---HHHHHHHHHHHHHhhhHH
Confidence                            233346788999999999999999999999986542     21   234455566666666554


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC
Q 006812          267 EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK  346 (630)
Q Consensus       267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  346 (630)
                      .+.........     .....+........++. ....+.++.+...+..+...      .+....++..+|.+|...|+
T Consensus       157 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~lg~~~~~~g~  224 (259)
T d1xnfa_         157 AKEVLKQHFEK-----SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL------AEHLSETNFYLGKYYLSLGD  224 (259)
T ss_dssp             HHHHHHHHHHH-----SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhc-----cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc------CcccHHHHHHHHHHHHHCCC
Confidence            44444333222     11122221111111111 11122333333333333332      35567788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcc
Q 006812          347 FEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       347 ~~~A~~~~~~~l~~~~~~~  365 (630)
                      +++|+..|++++...+.+.
T Consensus       225 ~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         225 LDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCH
Confidence            9999999999998765543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=4.8e-17  Score=153.69  Aligned_cols=262  Identities=7%  Similarity=-0.128  Sum_probs=204.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHH-------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812          255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA-------HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS  327 (630)
Q Consensus       255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  327 (630)
                      +.......+..++|+.++++++.+.+     ++....       ..+...+..+...|++++|+.+++++++.      .
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~P-----~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~------~  103 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGANP-----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------N  103 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------C
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh------C
Confidence            33334444455899999999998654     232211       12223333455566788999999988876      7


Q ss_pred             hhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812          328 SELLRAEIDAANMQIALGK--FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI  405 (630)
Q Consensus       328 ~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  405 (630)
                      |....++..+|.++...++  +++|+..+++++...++...   ..+...|.++...+++++|+.++++++.+.      
T Consensus       104 pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~------  174 (334)
T d1dcea1         104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQAAVAPAEELAFTDSLITRN------  174 (334)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTCCCHHHHHHHHHTTTTTT------
T ss_pred             CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhh---hhhhHHHHHHHhccccHHHHHHHHHHHHcC------
Confidence            8888888999988887765  89999999999997655433   245677899999999999999999887764      


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                        |....++.++|.++...|++++|...+.+++.+....           ......+...+..+++...+.+++..    
T Consensus       175 --p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~a~~~~~~~l~~----  237 (334)
T d1dcea1         175 --FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----------LELVQNAFFTDPNDQSAWFYHRWLLG----  237 (334)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----------HHHHHHHHHHCSSCSHHHHHHHHHHS----
T ss_pred             --CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----------HHHHHHHHHhcchhHHHHHHHHHHHh----
Confidence              4566899999999999999999988888877764332           23344556778899999999998872    


Q ss_pred             cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812          486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  565 (630)
                          .|.....+..+|.++...|++.+|+..+.+++.        .+|....++..+|.+|...|++++|+++|++++++
T Consensus       238 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         238 ----RAEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             ----CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             ----CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                233344566888999999999999999999987        78999999999999999999999999999999987

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-14  Score=142.31  Aligned_cols=280  Identities=12%  Similarity=0.036  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 006812          175 DSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRD  254 (630)
Q Consensus       175 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  254 (630)
                      +|+++|++|+.+                .|..+.+++++|.++..+|++.+|   |++++...        |..+.....
T Consensus         4 eA~q~~~qA~~l----------------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--------p~~a~~~~~   56 (497)
T d1ya0a1           4 QSAQYLRQAEVL----------------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--------LEYALDKKV   56 (497)
T ss_dssp             HHHHHHHHHHHH----------------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--------HHHHHHHTH
T ss_pred             HHHHHHHHHHHc----------------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--------hhhHHHHhH
Confidence            789999999998                333445566789999999999876   78877443        333333322


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 006812          255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAE  334 (630)
Q Consensus       255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  334 (630)
                      .+.++  ...|..+++.+++..+...   ..+.....  ...++.++...+.|+.|+..+.++..+      ++.....+
T Consensus        57 e~~Lw--~~~y~~~ie~~r~~~k~~~---~~~~~~~~--~~~~~~l~~a~~~Y~~ai~~l~~~~~l------~~~~~~~~  123 (497)
T d1ya0a1          57 EQDLW--NHAFKNQITTLQGQAKNRA---NPNRSEVQ--ANLSLFLEAASGFYTQLLQELCTVFNV------DLPCRVKS  123 (497)
T ss_dssp             HHHHH--HHHTHHHHHHHHHHHSCSS---CTTTTHHH--HHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred             HHHHH--HHHHHHHHHHHHHhccccc---CccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC------ChhhHHHH
Confidence            22222  1224556666665543211   11111211  223455555566677776666655543      56777888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812          335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY  414 (630)
Q Consensus       335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  414 (630)
                      .++|..+...|++++|...+.+++....      ..++.++|.++...|++++|+.+|++|+.+.        |+.+..+
T Consensus       124 ~~lg~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--------P~~~~~~  189 (497)
T d1ya0a1         124 SQLGIISNKQTHTSAIVKPQSSSCSYIC------QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPY  189 (497)
T ss_dssp             -------------------CCHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHH
T ss_pred             HHhHHHHHhCCCHHHHHHHHHHHhCCCH------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCchHHH
Confidence            9999999999999999999998886432      3478899999999999999999999999986        6677899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHH
Q 006812          415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG  494 (630)
Q Consensus       415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  494 (630)
                      +++|.++...|++.+|+.+|.+++.+       .++...++.+|+.++.+..+..++..            .....+...
T Consensus       190 ~~Lg~~~~~~~~~~~A~~~y~ral~~-------~~~~~~a~~nL~~~~~~~~~~~~~~~------------~~~~~~~~~  250 (497)
T d1ya0a1         190 NQLAILASSKGDHLTTIFYYCRSIAV-------KFPFPAASTNLQKALSKALESRDEVK------------TKWGVSDFI  250 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHSS-------SBCCHHHHHHHHHHHHHHTTSCCCCC------------SSCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHhhhhhhhhc------------cccccchHH
Confidence            99999999999999999999999874       23445688999988876554332211            001122333


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS  527 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  527 (630)
                      ..+..+..+++....++......++.+......
T Consensus       251 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  283 (497)
T d1ya0a1         251 KAFIKFHGHVYLSKSLEKLSPLREKLEEQFKEL  283 (497)
T ss_dssp             HHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            344455555666677777666666665544433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-13  Score=134.27  Aligned_cols=279  Identities=9%  Similarity=-0.024  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHH
Q 006812          131 MTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVH  210 (630)
Q Consensus       131 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (630)
                      +|+++|++|+++.++.          +.++.++|.++..+|++++|   |++++..                .+..+..+
T Consensus         4 eA~q~~~qA~~l~p~~----------a~a~~~la~~~~~~~~l~ea---ye~~i~~----------------dp~~a~~~   54 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADM----------TDSKLGPAEVWTSRQALQDL---YQKMLVT----------------DLEYALDK   54 (497)
T ss_dssp             HHHHHHHHHHHHHGGG----------TCSSSCSSSSHHHHHHHHHH---HHHHHHH----------------CHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCC----------HHHHhhHHHHHHHHchHHHH---HHHHHHc----------------ChhhHHHH
Confidence            7999999999987554          34557899999999999887   8888876                22222222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH
Q 006812          211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV  290 (630)
Q Consensus       211 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  290 (630)
                      ...+..+  ...|..+++.+++..+...   ..+...  .....++.++...+.|+.|+..+.+++.+        .+..
T Consensus        55 ~~e~~Lw--~~~y~~~ie~~r~~~k~~~---~~~~~~--~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~  119 (497)
T d1ya0a1          55 KVEQDLW--NHAFKNQITTLQGQAKNRA---NPNRSE--VQANLSLFLEAASGFYTQLLQELCTVFNV--------DLPC  119 (497)
T ss_dssp             THHHHHH--HHHTHHHHHHHHHHHSCSS---CTTTTH--HHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred             hHHHHHH--HHHHHHHHHHHHHhccccc---CccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------Chhh
Confidence            2222222  1224455555554432110   011111  11222345555556666666666655543        2344


Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812          291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL  370 (630)
Q Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  370 (630)
                      ...+.++|..+...|++++|+..+.+++...        ...++.++|.++...|++++|+.+|++++...+.+.    .
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~----~  187 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----Q  187 (497)
T ss_dssp             -----------------------CCHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----H
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch----H
Confidence            5668899999999999999999999887752        346788999999999999999999999999876664    4


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      .++++|.++...|++.+|+.+|.+++.+.        +....++.+|+.++....+..++..           . ....+
T Consensus       188 ~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--------~~~~~a~~nL~~~~~~~~~~~~~~~-----------~-~~~~~  247 (497)
T d1ya0a1         188 PYNQLAILASSKGDHLTTIFYYCRSIAVK--------FPFPAASTNLQKALSKALESRDEVK-----------T-KWGVS  247 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHSSS--------BCCHHHHHHHHHHHHHHTTSCCCCC-----------S-SCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHhhhhhhhhc-----------c-ccccc
Confidence            89999999999999999999999998754        3455788888887765432211000           0 00011


Q ss_pred             h-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812          451 E-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKES  485 (630)
Q Consensus       451 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  485 (630)
                      . ...+..+..+++....++...+..++.+......
T Consensus       248 ~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  283 (497)
T d1ya0a1         248 DFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKEL  283 (497)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            1 2233455555666777777777777666655544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.2e-13  Score=112.28  Aligned_cols=151  Identities=13%  Similarity=0.133  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG  492 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (630)
                      .+.+.|..+...|++++|++.|.++        .  ++...+++++|.+|..+|++++|+..|++++++        +|.
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i--------~--~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV--------Q--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS--------S--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc--------C--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            3446799999999999999888652        1  223468899999999999999999999999984        466


Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh-------cC-CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812          493 VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS-------LG-PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID  564 (630)
Q Consensus       493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  564 (630)
                      .+.++.++|.++..+|++++|+..|++++......       .+ .......++++++|.++..+|++++|.+.+.+|+.
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            77899999999999999999999999998753211       01 01223457899999999999999999999999886


Q ss_pred             HHHHcCCCchhHHHHHHHHH
Q 006812          565 AWESHGPSAQDELREARRLL  584 (630)
Q Consensus       565 ~~~~~~~~~~~~~~~A~~~~  584 (630)
                      +...   ......+.|+..+
T Consensus       149 ~~~~---~~~~~~~~Al~~~  165 (192)
T d1hh8a_         149 MKSE---PRHSKIDKAMECV  165 (192)
T ss_dssp             TCCS---GGGGHHHHHHHHH
T ss_pred             cCCC---cchHHHHHHHHHH
Confidence            5322   2345556665544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.40  E-value=8.9e-12  Score=101.65  Aligned_cols=138  Identities=17%  Similarity=0.148  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCC----ChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812          115 GLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRP----SLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL  190 (630)
Q Consensus       115 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  190 (630)
                      ++..|..++..| +|++|+..|++++++.+..  ++..    .+..+.++.++|.+|..+|++++|+..+++++.+.++.
T Consensus        12 ~l~~g~~~~~~g-~y~~Ai~~y~~Al~i~~~~--~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1          12 ALSDAQRQLVAG-EYDEAAANCRRAMEISHTM--PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTS--CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHhChhh--hhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            344488888888 9999999999999999776  3321    23467889999999999999999999999999998765


Q ss_pred             hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 006812          191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA  261 (630)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  261 (630)
                      ....     ++..+....+++++|.+|..+|++++|+..|++++++.++..+ ..+........++..+..
T Consensus        89 ~~~~-----~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1          89 GELN-----QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             CCTT-----STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHHH
T ss_pred             cccc-----ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHHH
Confidence            3322     3445566778999999999999999999999999999887643 223334444444444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.40  E-value=9.4e-12  Score=101.51  Aligned_cols=125  Identities=18%  Similarity=0.092  Sum_probs=100.9

Q ss_pred             HHHHHHHh--hHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812          156 VAMCLQVM--GSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC  233 (630)
Q Consensus       156 ~~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (630)
                      ++.++..+  |..++..|+|++|+..|++++++.+...+..    .....+..+.++.++|.+|..+|++++|+..++++
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~----~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE----AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhh----hcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            45555555  7888899999999999999999966653322    11223445678999999999999999999999999


Q ss_pred             HHHHHHHhc---cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812          234 LEIKELILE---EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG  284 (630)
Q Consensus       234 l~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  284 (630)
                      +.+.++...   ...+....+++++|.+|...|++++|+..|++++++.++..+
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            999887532   223566778999999999999999999999999999987543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.2e-12  Score=107.49  Aligned_cols=132  Identities=16%  Similarity=0.095  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhH
Q 006812          251 ANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSEL  330 (630)
Q Consensus       251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  330 (630)
                      .+++.|..+...|+|++|++.|.++.        +.+   +.+++++|.+|..+|++++|+.+|++|+++      +|..
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~--------~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------dp~~   69 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHL   69 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcC--------CCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHH------hhhh
Confidence            35567999999999999999887521        122   356889999999999999999999999998      7888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc------------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812          331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES------------ETRALVFISMGKALCNQEKFADAKRCLEIACGI  398 (630)
Q Consensus       331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  398 (630)
                      ..++.++|.++..+|++++|+..|++++...+.+.            .....+++++|.++...|++++|.+.+.+++.+
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998654321            123568899999999999999999999988765


Q ss_pred             H
Q 006812          399 L  399 (630)
Q Consensus       399 ~  399 (630)
                      .
T Consensus       150 ~  150 (192)
T d1hh8a_         150 K  150 (192)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.36  E-value=3e-10  Score=102.33  Aligned_cols=221  Identities=14%  Similarity=0.135  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESET  367 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~  367 (630)
                      .++++||..+...+++++|+++|+++.+.        ....+...||.+|..    ..++..|..+++.+....   .  
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~--   69 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y--   69 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C--
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---c--
Confidence            46889999999999999999999998653        345788899999997    678999999999877632   1  


Q ss_pred             HHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 006812          368 RALVFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLA  439 (630)
Q Consensus       368 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  439 (630)
                       ..+...+|.++..    ..+.+.|...++.+....          ...+...++..+..    ......|...+.+...
T Consensus        70 -~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g----------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~  138 (265)
T d1ouva_          70 -SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD  138 (265)
T ss_dssp             -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             -cchhhccccccccccccchhhHHHHHHHhhhhhhh----------hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc
Confidence             2356667776654    467888999888876531          12345556666654    4457777777776655


Q ss_pred             HHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChh
Q 006812          440 LLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQ  511 (630)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  511 (630)
                      .         .....+..+|.++..    ..+...+..+++.+.+          .....+++++|.+|..    ..+++
T Consensus       139 ~---------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         139 L---------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD----------LKDSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             T---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             c---------cccchhhhhhhhhccCCCcccccccchhhhhcccc----------ccccccccchhhhcccCcccccchh
Confidence            2         234577889999987    3455566777777665          2235588899999987    67899


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 006812          512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS----MGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       512 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  565 (630)
                      +|+.+|+++.+.       .++   .++++||.+|..    ..++++|.++|++|.+.
T Consensus       200 ~A~~~~~~aa~~-------g~~---~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         200 EALARYSKACEL-------ENG---GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHHHHHHHHT-------TCH---HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             hhhhhHhhhhcc-------cCH---HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            999999999773       233   688999999986    45899999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=7.9e-12  Score=107.67  Aligned_cols=107  Identities=24%  Similarity=0.223  Sum_probs=95.6

Q ss_pred             chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812          450 SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG  529 (630)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  529 (630)
                      |.+..+...|..++..|+|++|+.+|++++++        .|..+.++.++|.+|...|++++|+.+|+++++       
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~-------   66 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALE-------   66 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH-------
Confidence            34556788999999999999999999999994        466778999999999999999999999999988       


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812          530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS  572 (630)
Q Consensus       530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  572 (630)
                       .+|....++.++|.+|..+|++++|+..|++++++.+.....
T Consensus        67 -l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          67 -LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             -SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence             457777899999999999999999999999999998875443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.33  E-value=8.8e-10  Score=99.16  Aligned_cols=222  Identities=16%  Similarity=0.146  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHc
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG----LEEHQKALEQNELSQKVLKTW  324 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~  324 (630)
                      +.+++.||..+...+++++|+++|+++.+.       ++   ..+...||.+|..    ..++..|..+++.+...    
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence            357899999999999999999999999753       22   3567889999987    66899999998876653    


Q ss_pred             CCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHH
Q 006812          325 GLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN----QEKFADAKRCLEIAC  396 (630)
Q Consensus       325 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~  396 (630)
                          ....+...+|.++..    ..+.+.|...++.+.....      ..+...++..+..    ......+...+....
T Consensus        68 ----~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~  137 (265)
T d1ouva_          68 ----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC  137 (265)
T ss_dssp             ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             ----cccchhhccccccccccccchhhHHHHHHHhhhhhhhh------hhHHHhhcccccCCCcccchhHHHHHHhhhhh
Confidence                234556677777764    5688999999998876322      1244555655554    445666666666543


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCCh
Q 006812          397 GILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKV  468 (630)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~  468 (630)
                      ..          .....+..+|.++..    ..+...+..+++.+.+.         ....+..++|.+|..    ..++
T Consensus       138 ~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~---------g~~~A~~~lg~~y~~g~~~~~d~  198 (265)
T d1ouva_         138 DL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---------KDSPGCFNAGNMYHHGEGATKNF  198 (265)
T ss_dssp             HT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTCSSCCCH
T ss_pred             cc----------cccchhhhhhhhhccCCCcccccccchhhhhccccc---------cccccccchhhhcccCcccccch
Confidence            32          234567889999886    45677788888877652         134578999999987    6789


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 006812          469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  523 (630)
                      ++|+.+|+++.+.       .+   ..++++||.+|..    ..++++|..+|++|...
T Consensus       199 ~~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         199 KEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             hhhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            9999999999872       23   4578899999986    44899999999999875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.3e-11  Score=94.79  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812          413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG  492 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (630)
                      -+...|..+...|++++|+.+|++++.+     .+.  ...++.++|.+|..+|++++|+..+++++.+        .|.
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~-----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~   69 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL-----DPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPD   69 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc--chhhhhcccccccccccccccchhhhhHHHh--------ccc
Confidence            3567899999999999999999999986     222  3568999999999999999999999999984        356


Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812          493 VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY  546 (630)
Q Consensus       493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  546 (630)
                      ...++.++|.++..+|++++|+..|++++++        .|+...++..++.+.
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Confidence            6779999999999999999999999999983        344446666666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.7e-11  Score=93.89  Aligned_cols=106  Identities=23%  Similarity=0.273  Sum_probs=93.0

Q ss_pred             HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812          156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE  235 (630)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  235 (630)
                      .+..+..+|..++..|+|++|+.+|++++++                .|....++.++|.+|..+|+|++|+..++++++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL----------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3556678999999999999999999999998                233456888999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812          236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI  278 (630)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  278 (630)
                      +.+... ......+.++..+|.++...+++++|+.+|++++..
T Consensus        67 l~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          67 VGRENR-EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hCcccH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            887653 445677889999999999999999999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-10  Score=96.20  Aligned_cols=131  Identities=11%  Similarity=0.040  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH-------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812          248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV-------EVAHDRRLLGVIYSGLEEHQKALEQNELSQKV  320 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  320 (630)
                      .+..+...|..++..|+|++|+..|++++.+.+........       ....++.++|.+|..+|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            36678889999999999999999999999987754333222       34567788999999999999999999999998


Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH
Q 006812          321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA  388 (630)
Q Consensus       321 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  388 (630)
                            +|..+.++..+|.+|..+|++++|+..|+++++..|.+..    +...++.+....+...+.
T Consensus        92 ------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~----~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 ------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA----AKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH----HHHHHHHHHHHHHHHHHH
T ss_pred             ------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHH
Confidence                  7888999999999999999999999999999998765533    566677766665555444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8e-11  Score=96.37  Aligned_cols=128  Identities=18%  Similarity=0.220  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS  328 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  328 (630)
                      +..+...|..|+..|+|++|+.+|++++++.+        .....+.++|.++...|++++|+..|++++++      +|
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------~p   75 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNP--------SNAIYYGNRSLAYLRTECYGYALGDATRAIEL------DK   75 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccch--------hhhhhhhhhHHHHHhccccchHHHHHHHHHHH------cc
Confidence            55677789999999999999999999999744        34678899999999999999999999999998      78


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH--HHhhccHHHHHHHHHH
Q 006812          329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKA--LCNQEKFADAKRCLEI  394 (630)
Q Consensus       329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~~  394 (630)
                      ....++..+|.++..+|++++|+..+++++...+.+..    ++..++.+  ....+.+++|+.....
T Consensus        76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          76 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----AKMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            88999999999999999999999999999998765533    44444433  3334445555544333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.1e-11  Score=99.79  Aligned_cols=131  Identities=15%  Similarity=0.070  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch--------hHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE--------GSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ..+..+...|..++..|++++|+..|++++.+...........        ..++.++|.+|.++|++++|+.++++++.
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            3456778899999999999999999999999876654433221        34567899999999999999999999998


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 006812          481 RLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA  555 (630)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  555 (630)
                      +        +|....++..+|.+|..+|++++|+..|++++++.        |+...+...++.+....++..+.
T Consensus        91 ~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          91 L--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------PNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHH
Confidence            4        46677899999999999999999999999999852        33445677778777766655544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.3e-11  Score=97.47  Aligned_cols=95  Identities=14%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812          334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA  413 (630)
Q Consensus       334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  413 (630)
                      +...|..|+..|+|++|+..|+++++..+.+    ..+|.++|.++...|++++|+..|++++++.        |....+
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--------p~~~~a   80 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD--------KKYIKG   80 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhh----hhhhhhhHHHHHhccccchHHHHHHHHHHHc--------ccchHH
Confidence            3445666777777777777777777654433    4467777777777777777777777777664        345566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          414 YSEISMQYESMNEFETAISLLKRTLAL  440 (630)
Q Consensus       414 ~~~la~~~~~~g~~~~A~~~~~~al~~  440 (630)
                      +..+|.++...|++++|+..+++++.+
T Consensus        81 ~~~~g~~~~~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          81 YYRRAASNMALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            777777777777777777777777765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.1e-11  Score=93.64  Aligned_cols=111  Identities=13%  Similarity=0.007  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812          293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF  372 (630)
Q Consensus       293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  372 (630)
                      -+...|..+...|++++|+..|+++++.      +|....++.++|.+|..+|++++|+..+.+++...+.+.    .+|
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~   74 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG----KGY   74 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCcchhhhhcccccccccccccccchhhhhHHHhccchh----hHH
Confidence            3567799999999999999999999987      788899999999999999999999999999999766553    489


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY  421 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  421 (630)
                      .++|.++..+|++++|+..|++++++.        |....++..++.+.
T Consensus        75 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~l~  115 (117)
T d1elwa_          75 SRKAAALEFLNRFEEAKRTYEEGLKHE--------ANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHh
Confidence            999999999999999999999998764        34445666666543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.7e-11  Score=93.28  Aligned_cols=105  Identities=14%  Similarity=0.153  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812          369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ  448 (630)
Q Consensus       369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  448 (630)
                      +..+..+|..+...|+|++|+.+|++++++.        |....++.++|.+|..+|++++|+..+++++++.+......
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~   75 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH
Confidence            4567789999999999999999999999874        45567999999999999999999999999999988875543


Q ss_pred             CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812          449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAER  481 (630)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (630)
                      ...+.++..+|.++...+++++|+.+|++++..
T Consensus        76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            333678899999999999999999999999873

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.24  E-value=1.4e-10  Score=95.60  Aligned_cols=138  Identities=12%  Similarity=-0.002  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc--------hhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS--------EGSVSARIGWLLLLTGKVPQAIPYLESAAE  480 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (630)
                      ..+..+...|..++..|++.+|+..|.+++.+..........        ...++.++|.+|..+|++++|+.++++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            345677889999999999999999999999987655432221        134567899999999999999999999998


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHH-HHHHH
Q 006812          481 RLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL-AIEFQ  559 (630)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~  559 (630)
                      +        +|....+++++|.++..+|++++|+..|++++.+        +|+...+...++.+....+.+.+ ..+.|
T Consensus        93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~  156 (168)
T d1kt1a1          93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTY  156 (168)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4        4667789999999999999999999999999883        45555677777777766665443 33444


Q ss_pred             HHH
Q 006812          560 QRA  562 (630)
Q Consensus       560 ~~a  562 (630)
                      .+.
T Consensus       157 ~~~  159 (168)
T d1kt1a1         157 ANM  159 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.24  E-value=1.5e-11  Score=93.59  Aligned_cols=95  Identities=13%  Similarity=0.111  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH  532 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  532 (630)
                      ...+.+|..+...|++++|+..|++++..        +|....++..+|.++...|++++|+.+|++++++        +
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~   80 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D   80 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------c
Confidence            34578999999999999999999999983        4667789999999999999999999999999995        4


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          533 ADSIEACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       533 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                      |+...++..+|.+|...|++++|++.+++.+
T Consensus        81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          81 PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            6667899999999999999999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.23  E-value=4e-11  Score=97.12  Aligned_cols=125  Identities=14%  Similarity=0.065  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch---------hHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE---------GSVSARIGWLLLLTGKVPQAIPYLESAA  479 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al  479 (630)
                      ..+..+...|..++..|+|.+|+..|.+++.+...........         ..++.++|.+|.++|++++|+.++++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            3455677789999999999999999999998876554332221         2356789999999999999999999999


Q ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812          480 ERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM  549 (630)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  549 (630)
                      ++        +|....+++++|.++..+|++++|+..|++++++.        |+...+...++.+..++
T Consensus        95 ~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          95 KI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------PNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHH
T ss_pred             cc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Confidence            84        46777899999999999999999999999999963        44445666666665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.1e-09  Score=100.89  Aligned_cols=194  Identities=8%  Similarity=0.011  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 006812          223 REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS  302 (630)
Q Consensus       223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  302 (630)
                      .++|...|+++++.       ..|.....+...+.++...|++++|...|++++...+     .  ....++...+....
T Consensus        80 ~~~a~~i~~ral~~-------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~-----~--~~~~~w~~~~~~~~  145 (308)
T d2onda1          80 SDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-----I--DPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHTT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-----S--CTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc-----C--ChHHHHHHHHHHHH
Confidence            34555555555532       2233345678889999999999999999999986422     1  22344667788888


Q ss_pred             ccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh
Q 006812          303 GLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI-ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN  381 (630)
Q Consensus       303 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~  381 (630)
                      ..|+++.|...|.++++.      .|.....+...+.... ..|+.+.|..+|++++...+.+    ...+...+..+..
T Consensus       146 ~~~~~~~ar~i~~~al~~------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~----~~~w~~y~~~~~~  215 (308)
T d2onda1         146 RAEGIKSGRMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTS------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHT
T ss_pred             HcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHH
Confidence            999999999999988764      4445566667776644 4689999999999999976655    3478888999999


Q ss_pred             hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812          382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       382 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  444 (630)
                      .|+++.|..+|++++.....    ++......|..........|+.+.+..+++++.++++..
T Consensus       216 ~g~~~~aR~~fe~ai~~~~~----~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         216 LNEDNNTRVLFERVLTSGSL----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSS----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             cCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            99999999999999875421    122334567777777788899999999999998886544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.22  E-value=2.7e-10  Score=93.88  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC-------CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812          249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN-------SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL  321 (630)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  321 (630)
                      +..+...|..++..|+|.+|+..|.+++.+.+......       .+....++.++|.+|..+|++++|+.++++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            56788899999999999999999999999876533221       1235567889999999999999999999999988 


Q ss_pred             HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH
Q 006812          322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD  387 (630)
Q Consensus       322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~  387 (630)
                           +|....+++.+|.++..+|++++|+..|++++.+.|.+.    .+...++.+....+.+.+
T Consensus        94 -----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~----~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          94 -----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK----AARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHHHHHHH
T ss_pred             -----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhHHH
Confidence                 788899999999999999999999999999999766553    356667766666555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.22  E-value=1.8e-10  Score=93.15  Aligned_cols=123  Identities=14%  Similarity=0.086  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH--------HHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 006812          248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV--------EVAHDRRLLGVIYSGLEEHQKALEQNELSQK  319 (630)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  319 (630)
                      .+..+...|..++..|+|.+|+..|++++.+..........        ....++.++|.+|..+|++++|+.++++++.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            35667788999999999999999999999877654322222        2345778899999999999999999999988


Q ss_pred             HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Q 006812          320 VLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC  380 (630)
Q Consensus       320 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~  380 (630)
                      +      +|....+++.+|.++..+|++++|+..|++++++.|.+..    +...++.+..
T Consensus        96 ~------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~----~~~~l~~~~~  146 (153)
T d2fbna1          96 I------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD----IRNSYELCVN  146 (153)
T ss_dssp             H------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHH
T ss_pred             c------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Confidence            7      7788899999999999999999999999999998765533    4444544443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=1.2e-10  Score=96.36  Aligned_cols=136  Identities=15%  Similarity=0.154  Sum_probs=102.7

Q ss_pred             HHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          158 MCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK  237 (630)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  237 (630)
                      ..+...|..++..|+|.+|+..|++++.+.................+....++.++|.++..+|++++|+..|.+++++ 
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-  106 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  106 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-
Confidence            3456788999999999999999999998765443322111112235667788899999999999999999999999954 


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHH
Q 006812          238 ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQK  309 (630)
Q Consensus       238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  309 (630)
                             +|..+.++..+|.+|...|++++|+..|++++++.+     +++   .+...++.++.......+
T Consensus       107 -------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-----~n~---~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         107 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-----EDK---AIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCH---HHHHHHHHHHHHHHHHHH
T ss_pred             -------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-----CCH---HHHHHHHHHHHHHHHHHH
Confidence                   355578899999999999999999999999999754     233   345555666554444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.7e-11  Score=102.69  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=90.3

Q ss_pred             HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812          157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI  236 (630)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  236 (630)
                      +..+...|..++..|+|++|+..|++++.+                .|..+.+|+++|.+|...|++++|+..|++++++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~----------------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            445678999999999999999999999998                3344678899999999999999999999999844


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812          237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG  282 (630)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  282 (630)
                              .|....++.++|.+|..+|++++|+..|++++++.+..
T Consensus        68 --------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          68 --------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             --------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence                    45557889999999999999999999999999988753

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=2.7e-10  Score=94.20  Aligned_cols=129  Identities=12%  Similarity=0.070  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCC--------CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812          250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGH--------NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL  321 (630)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  321 (630)
                      ..+...|..++..|+|.+|+..|.+++.+.+.....        ..+....++.++|.+|..+|++++|+..+++++++ 
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-  106 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  106 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-
Confidence            345667899999999999999999999875532111        13456778889999999999999999999998876 


Q ss_pred             HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH
Q 006812          322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA  388 (630)
Q Consensus       322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  388 (630)
                           +|....++..+|.+|..+|++++|+..|++++++.+.+..    +...++.+........++
T Consensus       107 -----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~----~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         107 -----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA----IQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred             -----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHH
Confidence                 7888899999999999999999999999999998766533    556666666555444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=2.4e-09  Score=98.46  Aligned_cols=175  Identities=11%  Similarity=0.028  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812          207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN  286 (630)
Q Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  286 (630)
                      ...+...+......|+++.|...|+++++..     +.  ....++...+......|+++.|...|++++...+     .
T Consensus        99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-----~~--~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-----~  166 (308)
T d2onda1          99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DI--DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-----T  166 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SS--CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-----C
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-----cC--ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----C
Confidence            3567788999999999999999999988432     21  1234577888899999999999999999987433     2


Q ss_pred             CHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812          287 SVEVAHDRRLLGVI-YSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES  365 (630)
Q Consensus       287 ~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  365 (630)
                      .   ...+...+.. +...|+.+.|...|++++..      .|.....+...+......|+++.|..+|++++...+.++
T Consensus       167 ~---~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         167 R---HHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             C---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             c---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            2   2344455655 44568999999999998876      355577888889999999999999999999999766555


Q ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812          366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK  402 (630)
Q Consensus       366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  402 (630)
                      ......|......-...|+.+.+..+++++.+.+...
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            4445577777777788899999999999988877543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.14  E-value=3.3e-10  Score=85.86  Aligned_cols=93  Identities=17%  Similarity=-0.035  Sum_probs=85.6

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812          294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI  373 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~  373 (630)
                      ...+|..+...|++++|+..|++++..      .|....++..+|.++...|++++|+..++++++..+.+    ..++.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~   88 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHA   88 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc------ccccchhhhhhhhhhhhhhhHHHhhccccccccccccc----ccchH
Confidence            467899999999999999999999987      78889999999999999999999999999999976665    45899


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHH
Q 006812          374 SMGKALCNQEKFADAKRCLEIAC  396 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~  396 (630)
                      .+|.+|...|++++|++++++.+
T Consensus        89 ~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          89 ALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-09  Score=79.87  Aligned_cols=71  Identities=17%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812          112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM  186 (630)
Q Consensus       112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (630)
                      +.-++.+|.+++..| +|++|+.+|++|+++.+..  .. ..+..+.++.++|.++...|++++|+.+|++++++
T Consensus         5 addc~~lG~~~~~~g-~y~~A~~~~~~Al~~~~~~--~~-~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEA-DYYHTELWMEQALRQLDEG--EI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT--CC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHhhh--hc-cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            456789999999999 9999999999999998764  22 23567889999999999999999999999999998

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-10  Score=88.27  Aligned_cols=111  Identities=8%  Similarity=-0.032  Sum_probs=85.8

Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812          374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN---EFETAISLLKRTLALLEKLPQAQHS  450 (630)
Q Consensus       374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  450 (630)
                      .++..+...+++++|++.|++++.+.        |....+++++|.++...+   ++++|+..|++++..     ++.+.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-----~~~~~   70 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG--------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-----cCCch
Confidence            56677888999999999999999875        566789999999998754   555788888887763     11122


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 006812          451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL  505 (630)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~  505 (630)
                      ...+++++|.+|...|++++|+.+|++++++        .|....+...++.+..
T Consensus        71 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          71 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHH
Confidence            2568899999999999999999999999994        3555556656555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.7e-10  Score=85.88  Aligned_cols=112  Identities=8%  Similarity=-0.017  Sum_probs=90.3

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812          295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG---KFEEAINTLKGVVRQTEKESETRALV  371 (630)
Q Consensus       295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~  371 (630)
                      .+++..+...+++++|.+.|++++.+      +|....+++++|.++...+   ++++|+..+++++...+  .+....+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~--~~~~~~~   74 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KEEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC--CchHHHH
Confidence            35677888999999999999999998      8888999999999998744   55679999999887432  2334568


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Q 006812          372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE  422 (630)
Q Consensus       372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  422 (630)
                      ++++|.+|...|++++|+.+|++++++.        |....+...++.+..
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--------P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQTE--------PQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHH
Confidence            9999999999999999999999999975        444455555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.9e-09  Score=78.48  Aligned_cols=87  Identities=11%  Similarity=0.031  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF  491 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (630)
                      ..++.+|.++...|++++|+.+|++|+++.+...........++.++|.++.+.|++++|+.+|++++++        .|
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------~P   77 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP   77 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------Cc
Confidence            4567999999999999999999999999988775555555788999999999999999999999999994        35


Q ss_pred             cHHHHHHHHHHHHHH
Q 006812          492 GVGYIYNNLGAAYLE  506 (630)
Q Consensus       492 ~~~~~~~~l~~~~~~  506 (630)
                      ....++.+++.+...
T Consensus        78 ~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          78 EHQRANGNLKYFEYI   92 (95)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            556688888766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.80  E-value=6.1e-09  Score=82.79  Aligned_cols=109  Identities=14%  Similarity=0.086  Sum_probs=79.3

Q ss_pred             hHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHH
Q 006812          164 GSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM----------GRREEALEHLQKC  233 (630)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a  233 (630)
                      +..+.+++.|++|+..|++++++                .|..+.+++++|.++...          +.+++|+..|+++
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~----------------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKS----------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   67 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhh----------------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            44566788899999999999998                444557778888888754          4457788888888


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 006812          234 LEIKELILEEDSRELGVANRDLAEAFVAVLN-----------FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS  302 (630)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  302 (630)
                      +++.        |....+++++|.+|..+|+           |++|+.+|++++++.+.        ....+..|+.+..
T Consensus        68 l~l~--------P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~--------~~~~~~~L~~~~k  131 (145)
T d1zu2a1          68 LLID--------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD--------NTHYLKSLEMTAK  131 (145)
T ss_dssp             HHHC--------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHT
T ss_pred             HHhc--------chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC--------HHHHHHHHHHHHH
Confidence            8553        4446789999999988764           68888888888886542        2344555565544


Q ss_pred             cc
Q 006812          303 GL  304 (630)
Q Consensus       303 ~~  304 (630)
                      ..
T Consensus       132 a~  133 (145)
T d1zu2a1         132 AP  133 (145)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=1.3e-08  Score=80.81  Aligned_cols=104  Identities=13%  Similarity=0.081  Sum_probs=81.3

Q ss_pred             HHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHhhhcchHHH
Q 006812          300 IYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL----------GKFEEAINTLKGVVRQTEKESETRA  369 (630)
Q Consensus       300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~~~~~~~~~~~  369 (630)
                      .+.+.+.+++|+..|++++++      +|..+.++.++|.++...          +.+++|+..|++++++.+.+    .
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~----~   75 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----D   75 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----H
T ss_pred             HHHHHccHHHHHHHHHHHHhh------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh----h
Confidence            355677899999999999998      899999999999999854          45688999999999876655    4


Q ss_pred             HHHHHHHHHHHhhcc-----------HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812          370 LVFISMGKALCNQEK-----------FADAKRCLEIACGILDKKETISPEEVADAYSEISMQY  421 (630)
Q Consensus       370 ~~~~~la~~~~~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  421 (630)
                      .+++++|.+|..+|+           +++|..+|++++++.        |.....+..++.+.
T Consensus        76 ~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--------P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          76 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--------CCHHHHHHHHHHHH
Confidence            488999999988764           677888888887765        34445666666554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=5.3e-07  Score=73.93  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc---------------hhHHHHHHHHHHHHcCChhhHHH
Q 006812          409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS---------------EGSVSARIGWLLLLTGKVPQAIP  473 (630)
Q Consensus       409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~  473 (630)
                      .....+...|......|++++|...|.+++.+++...-....               ...++..++.++...|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            445677889999999999999999999999976432211110               12456789999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812          474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH  531 (630)
Q Consensus       474 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  531 (630)
                      ++++++.+        +|....++..++.++...|++.+|+..|+++.....+.+|.+
T Consensus        89 ~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          89 ELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999993        567778999999999999999999999999999877766643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=4.9e-07  Score=74.16  Aligned_cols=125  Identities=14%  Similarity=0.025  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC--------------CccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812          453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK--------------HFGVGYIYNNLGAAYLELDRPQSAAQVFA  518 (630)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  518 (630)
                      ..+...|......|++++|...|.+++.++...+..+              .+....++..++.++...|++++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4567889999999999999999999998643211100              12334678899999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHH
Q 006812          519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQDELREARRLLEQLK  588 (630)
Q Consensus       519 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~A~~~~~~~~  588 (630)
                      +++.+        +|....++..++.+|...|++.+|+..|+++...+.. +|.+-..   +...+++.+.
T Consensus        92 ~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~---~l~~l~~~il  151 (179)
T d2ff4a2          92 ALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP---TLRALNERIL  151 (179)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH---HHHHHHHHHH
T ss_pred             HHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH---HHHHHHHHHH
Confidence            99994        5666789999999999999999999999999998776 6665322   2345555554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.28  E-value=6.1e-07  Score=78.66  Aligned_cols=128  Identities=13%  Similarity=-0.000  Sum_probs=97.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812          420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN  499 (630)
Q Consensus       420 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  499 (630)
                      -....|++++|+..++++++.       .+.+...+..++.++...|++++|+..|++++++        .|.....+..
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~-------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~~~   69 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKA-------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGASQ   69 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHHHH
Confidence            356789999999999999984       2334568899999999999999999999999984        4667777778


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812          500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH  569 (630)
Q Consensus       500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  569 (630)
                      ++.++...+..+++...+.+.       .-..+|.....+...+.++...|++++|.+.++++.+.....
T Consensus        70 l~~ll~a~~~~~~a~~~~~~~-------~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          70 LRHLVKAAQARKDFAQGAATA-------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCE-------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHhccccHHHHHHhhhh-------hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            888876655554443322211       112345666778888999999999999999999998876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.26  E-value=9.2e-07  Score=77.50  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=70.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812          341 QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ  420 (630)
Q Consensus       341 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  420 (630)
                      .+..|++++|+..++++++..+.+    ...+..++.+++..|++++|+..+++++++.        |.....+..++.+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d----~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--------P~~~~~~~~l~~l   73 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKD----ASLRSSFIELLCIDGDFERADEQLMQSIKLF--------PEYLPGASQLRHL   73 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------GGGHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHH
Confidence            345667777777777776654444    3366677777777777777777777766654        3444555556665


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812          421 YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAER  481 (630)
Q Consensus       421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (630)
                      +...+..+++...+.+..     . -...+....+...+.++...|++++|...++++.+.
T Consensus        74 l~a~~~~~~a~~~~~~~~-----~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          74 VKAAQARKDFAQGAATAK-----V-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHHHHHHHHTTSCCCEE-----C-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHhhhhh-----c-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            554444433322111110     0 111222344456667777777777777777777664

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=1.4e-05  Score=61.78  Aligned_cols=110  Identities=17%  Similarity=0.151  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812          425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY  504 (630)
Q Consensus       425 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  504 (630)
                      .++++|+.+|+++.+.     +  +  ......++.  ....++++|+.+++++.+          .....+.+.||.+|
T Consensus         7 kd~~~A~~~~~kaa~~-----g--~--~~a~~~l~~--~~~~~~~~a~~~~~~aa~----------~g~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL-----N--E--MFGCLSLVS--NSQINKQKLFQYLSKACE----------LNSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHT-----T--C--TTHHHHHHT--CTTSCHHHHHHHHHHHHH----------TTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC-----C--C--hhhhhhhcc--ccccCHHHHHHHHhhhhc----------ccchhhhhhHHHhh
Confidence            4788999999999763     2  1  224555554  345688999999999887          22345788999999


Q ss_pred             HH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 006812          505 LE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS----MGSYTLAIEFQQRAIDA  565 (630)
Q Consensus       505 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  565 (630)
                      ..    ..++++|+.+|+++.+.       .+|   .++..||.+|..    ..++++|..+|++|.+.
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL-------NDQ---DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhccccchhhHHHHHHHhhhhcc-------Ccc---hHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            86    56789999999999873       334   688999999987    56899999999999753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.92  E-value=5.4e-05  Score=58.32  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=83.0

Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 006812          383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL  462 (630)
Q Consensus       383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  462 (630)
                      .|+++|+.+|+++.+..      +    ..+...++.  ....+.++|+.+++++.+.       .  ...+.+.||.+|
T Consensus         7 kd~~~A~~~~~kaa~~g------~----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g--~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN------E----MFGCLSLVS--NSQINKQKLFQYLSKACEL-------N--SGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT------C----TTHHHHHHT--CTTSCHHHHHHHHHHHHHT-------T--CHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC------C----hhhhhhhcc--ccccCHHHHHHHHhhhhcc-------c--chhhhhhHHHhh
Confidence            47888999999886532      1    134455553  3457899999999998763       1  235778999999


Q ss_pred             HH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 006812          463 LL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       463 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  523 (630)
                      ..    ..++++|+.+|+++.+.       .   .+.+.+.||.+|..    ..++++|+.+|++|.+.
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~-------g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL-------N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhccccchhhHHHHHHHhhhhcc-------C---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            86    56789999999999872       2   34578899999987    56899999999999873

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.0017  Score=47.44  Aligned_cols=67  Identities=9%  Similarity=-0.019  Sum_probs=53.5

Q ss_pred             chhHHHHHHHHHHHHcCC---hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812          450 SEGSVSARIGWLLLLTGK---VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI  523 (630)
Q Consensus       450 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  523 (630)
                      +...+.++.|+++.+..+   .++|+.++++++..       +......+++.||..|.++|+|++|..++++++++
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            345678999999987654   46788888877752       22244679999999999999999999999999996

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.014  Score=42.53  Aligned_cols=67  Identities=10%  Similarity=0.084  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812          330 LLRAEIDAANMQIALG---KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGIL  399 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  399 (630)
                      ...+.++.|.++....   +.++|+.++++++...   +.....+++.||..|.+.|+|++|..++++++++.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~---p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            3678888888888654   4578999999888643   33345699999999999999999999999999886

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=1.8  Score=40.01  Aligned_cols=125  Identities=10%  Similarity=0.045  Sum_probs=74.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHH
Q 006812          417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG  494 (630)
Q Consensus       417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  494 (630)
                      .+..-....+.+.|...+......   .  ...+.  ......++..+...+..+.|..++.....        ......
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~---~--~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~--------~~~~~~  286 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQA---Q--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--------RSQSTS  286 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHH---T--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--------TCCCHH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhc---c--cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc--------cccchH
Confidence            333334456777777777665432   1  11111  12223344444455667777777766544        112222


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812          495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI  563 (630)
Q Consensus       495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  563 (630)
                      .....++ .....+++..+...+...-        ..........+.+|..+...|+.++|..+|..+.
T Consensus       287 ~~~w~~~-~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         287 LIERRVR-MALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             HHHHHHH-HHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            2222333 3456689988887776532        2333445788999999999999999999999875

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.22  E-value=1.1  Score=36.47  Aligned_cols=175  Identities=17%  Similarity=0.088  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHcCCChhH
Q 006812          252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-LEEHQKALEQNELSQKVLKTWGLSSEL  330 (630)
Q Consensus       252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~  330 (630)
                      +..+|.+..+.++|++.+.+.+++++..+..    ..+   -.+.+..+|.. .|....+...+.....-  ..+.... 
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eL----t~e---ERnLlsvayKn~i~~rR~s~R~l~~ie~k--~~~~~~~-   75 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGAEL----SNE---ERNLLSVAYKNVVGARRSSWRVVSSIEQK--TEGAEKK-   75 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSCC----CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------C-
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCCCC----CHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HcCcchh-
Confidence            5567888999999999999999987653321    111   12222333322 23333333333221110  0111100 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHhh----------ccHHHHHHHHH
Q 006812          331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEK-------ESETRALVFISMGKALCNQ----------EKFADAKRCLE  393 (630)
Q Consensus       331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~  393 (630)
                      ..    +..-| +..--++-...+..++.....       ++......+...|..|...          .-.+.|...|+
T Consensus        76 ~~----~i~~y-k~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~  150 (230)
T d2o02a1          76 QQ----MAREY-REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQ  150 (230)
T ss_dssp             HH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             hH----HHHHH-HHHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            00    01101 111112223333444433321       2222233333445555432          12357899999


Q ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 006812          394 IACGILDKKETISPEEVADAYSEISMQ-YESMNEFETAISLLKRTLALL  441 (630)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~  441 (630)
                      .|+.+......+.+|.......+.+.. |.-.|+.++|.+..+++++-.
T Consensus       151 ~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~a  199 (230)
T d2o02a1         151 EAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEA  199 (230)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999877777676666555556554 456899999999988887754

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.86  E-value=1.9  Score=37.72  Aligned_cols=171  Identities=14%  Similarity=0.055  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHH
Q 006812          253 RDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR  332 (630)
Q Consensus       253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  332 (630)
                      ..+|..+...|.|+.|..+|...-.                +..+..++...++++.|.+++.++           ....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d----------------~~rl~~~~v~l~~~~~avd~~~k~-----------~~~~   70 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN----------------FGRLASTLVHLGEYQAAVDGARKA-----------NSTR   70 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC----------------HHHHHHHHHTTTCHHHHHHHHHHH-----------TCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC----------------HHHHHHHHHhhccHHHHHHHHHHc-----------CCHH
Confidence            3467788888999998888864211                334456777888888888766542           1233


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Q 006812          333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVAD  412 (630)
Q Consensus       333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  412 (630)
                      ++..+...........-|.-     ........   +.-...+...|...|.+++...+++..+...        .....
T Consensus        71 ~~k~~~~~l~~~~e~~la~i-----~~~~~~~~---~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--------~~~~~  134 (336)
T d1b89a_          71 TWKEVCFACVDGKEFRLAQM-----CGLHIVVH---ADELEELINYYQDRGYFEELITMLEAALGLE--------RAHMG  134 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH-----TTTTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--------TCCHH
T ss_pred             HHHHHHHHHHhCcHHHHHHH-----HHHHhhcC---HHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--------ccchH
Confidence            44455555555554433211     11000011   1123345566677788888888887654321        11223


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHH
Q 006812          413 AYSEISMQYESMNEFETAISLLKR---------TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYL  475 (630)
Q Consensus       413 ~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (630)
                      .+..++.+|.+.+ .++-.++++.         ++.++++.        ..|..+..+|.+.|++++|+...
T Consensus       135 ~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~--------~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         135 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA--------HLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTT--------TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHc--------CChHHHHHHHHhcCCHHHHHHHH
Confidence            4566777776543 3333333332         22222111        12345666777788887776654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.32  E-value=2.4  Score=34.62  Aligned_cols=179  Identities=15%  Similarity=0.107  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHcCCChh
Q 006812          251 ANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-LEEHQKALEQNELSQKVLKTWGLSSE  329 (630)
Q Consensus       251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~  329 (630)
                      -+..+|.+..+.++|++...+.+++++....  ..-..+   -.+.+..+|.. .|....+...+.....-....+. ..
T Consensus         6 ~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~--~~Ls~e---ERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~-~~   79 (236)
T d1o9da_           6 ENVYMAKLAEQAERYEEMVEFMEKVSNSLGS--EELTVE---ERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN-EE   79 (236)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTCSS--SCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC--CCCCHH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCC-hH
Confidence            3566788888999999999999998865210  001111   12223333322 23333344333322211111121 11


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHhh----------ccHHHHHHHH
Q 006812          330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK-------ESETRALVFISMGKALCNQ----------EKFADAKRCL  392 (630)
Q Consensus       330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~  392 (630)
                      ...    +..-| ...--++-..++..++.....       ++......+...|..|...          .-.+.|...|
T Consensus        80 ~~~----~i~~y-k~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~aY  154 (236)
T d1o9da_          80 HVN----SIREY-RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAY  154 (236)
T ss_dssp             HHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            111    11111 011112222333444433221       2222233333445554432          1245688999


Q ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 006812          393 EIACGILDKKETISPEEVADAYSEISMQYE-SMNEFETAISLLKRTLAL  440 (630)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~  440 (630)
                      +.|..+......+.+|.......+.+..|. -.|+.++|.+..+++++-
T Consensus       155 ~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~  203 (236)
T d1o9da_         155 KAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  203 (236)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999987777777777666677777665 469999998887777653

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=91.36  E-value=2.9  Score=33.58  Aligned_cols=182  Identities=12%  Similarity=0.003  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhhcCCCcHHHH
Q 006812          334 EIDAANMQIALGKFEEAINTLKGVVRQTEK-ESETRALVFISMGKALCN-QEKFADAKRCLEIACGILDKKETISPEEVA  411 (630)
Q Consensus       334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  411 (630)
                      ...+|.+..+.|+|++..+..++++...+. ++.....-.+.+..+|.. .|....+...+..   +-.+..+ + ....
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~eERnLLsvayKn~i~~~R~s~R~i~~---ie~k~~~-~-~~~~   81 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQ---EQTKQLN-N-DELV   81 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHSCS-C-HHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHhhcc-c-hhHH
Confidence            345688888999999999999998887532 111111122222333322 2333333333322   1111111 1 1111


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHH--HHHHHHHH-----HcCChhhHHHHHHHHHHHHHH
Q 006812          412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVS--ARIGWLLL-----LTGKVPQAIPYLESAAERLKE  484 (630)
Q Consensus       412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~la~~~~-----~~g~~~~A~~~~~~al~~~~~  484 (630)
                      .    +..-|. ..--.+-...+...+.+......+ ++...++  -..|..|.     ..|.-++|...|++|..+...
T Consensus        82 ~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~-~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~  155 (220)
T d2o8pa1          82 K----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEK-SFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCE  155 (220)
T ss_dssp             H----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCC-SHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            1    111111 111234445566667776666543 3332332  33455443     467889999999999999988


Q ss_pred             hcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHH
Q 006812          485 SFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKDIMDV  526 (630)
Q Consensus       485 ~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~  526 (630)
                      .+.+.||-......|.+..++. +++.++|.+..+.|.+.+.+
T Consensus       156 ~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fde  198 (220)
T d2o8pa1         156 HPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL  198 (220)
T ss_dssp             CGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            8888888777666677766554 79999999999888554443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=5.9  Score=36.29  Aligned_cols=201  Identities=10%  Similarity=0.015  Sum_probs=118.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812          336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS  415 (630)
Q Consensus       336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  415 (630)
                      ..+..-....+.+.|...+....................++......+..+.+...+.......      .......  .
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~--w  290 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS------QSTSLIE--R  290 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC------CCHHHHH--H
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc------cchHHHH--H
Confidence            3444444556788888888776654443444334444445555555666677776665543211      1112222  2


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHH-------HHHhcCC
Q 006812          416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAER-------LKESFGP  488 (630)
Q Consensus       416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~  488 (630)
                      .++ .....+++..+...+...       ...........+-+|..+...|+.++|..+|..+..-       ....+|.
T Consensus       291 ~~~-~al~~~~~~~~~~~~~~l-------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~  362 (450)
T d1qsaa1         291 RVR-MALGTGDRRGLNTWLARL-------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGE  362 (450)
T ss_dssp             HHH-HHHHHTCHHHHHHHHHHS-------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTC
T ss_pred             HHH-HHHHcCChHHHHHHHHhc-------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCC
Confidence            222 345567888777666542       1111122456688999999999999999999886541       1111221


Q ss_pred             C----------Ccc---HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 006812          489 K----------HFG---VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA  555 (630)
Q Consensus       489 ~----------~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  555 (630)
                      .          .+.   ....-...+..+...|....|...+..++.-       .++   .-...++.+..+.|.++.|
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-------~~~---~~~~~la~lA~~~g~~~~a  432 (450)
T d1qsaa1         363 EYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-------KSK---TEQAQLARYAFNNQWWDLS  432 (450)
T ss_dssp             CCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CCH---HHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-------CCH---HHHHHHHHHHHHCCChhHH
Confidence            1          000   1112234567788899999999988766541       223   3455678999999999999


Q ss_pred             HHHHHHH
Q 006812          556 IEFQQRA  562 (630)
Q Consensus       556 ~~~~~~a  562 (630)
                      +....++
T Consensus       433 I~a~~~~  439 (450)
T d1qsaa1         433 VQATIAG  439 (450)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9776654

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=89.00  E-value=1.4  Score=35.54  Aligned_cols=82  Identities=20%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812          510 PQSAAQVFAFAKDIMDVSL--GPHHADSIEACQNLSKAY-SSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ  586 (630)
Q Consensus       510 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~  586 (630)
                      .+.|...|++|+++.....  .|.||-......+.+..| .-+++.++|.++.++|.+............++++..+.+.
T Consensus       123 ~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~~~~~~~~e~~~~ds~~ImqL  202 (223)
T d3efza1         123 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAENSRSDSEQFSENTEKLLKI  202 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTCCC--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence            3678899999999887743  477888777777776655 4589999999999999986655544444445566666666


Q ss_pred             HHHHh
Q 006812          587 LKIKA  591 (630)
Q Consensus       587 ~~~~~  591 (630)
                      ++...
T Consensus       203 LrDNl  207 (223)
T d3efza1         203 LRDNV  207 (223)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=86.80  E-value=6.8  Score=31.78  Aligned_cols=77  Identities=21%  Similarity=0.327  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHH----HHcCCCchhHHHHHHHHH
Q 006812          510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY-SSMGSYTLAIEFQQRAIDAW----ESHGPSAQDELREARRLL  584 (630)
Q Consensus       510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~A~~~~  584 (630)
                      .+.|...|++|..+....+.+.||.......+.+..| ...|+.++|.+..++++.-.    ..++++   .+.++..++
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~ai~~~d~l~ee---~~~ds~~i~  223 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEE---SYKDSTLIM  223 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC--------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCChh---hHHHHHHHH
Confidence            5678899999999998888999998887777777665 56699999998888777533    334443   344555555


Q ss_pred             HHHHH
Q 006812          585 EQLKI  589 (630)
Q Consensus       585 ~~~~~  589 (630)
                      +.++.
T Consensus       224 qLLrd  228 (236)
T d1o9da_         224 QLLRD  228 (236)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=82.40  E-value=10  Score=30.21  Aligned_cols=183  Identities=10%  Similarity=-0.023  Sum_probs=99.0

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812          294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI-ALGKFEEAINTLKGVVRQTEKESETRALVF  372 (630)
Q Consensus       294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  372 (630)
                      ...+|.+....|+|++..++..+...+....+..- ...-...+..+|- ..|....++..+....... .......   
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eL-t~eERnLLsvayKn~i~~~R~s~R~i~~ie~k~-~~~~~~~---   81 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEF-DDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ-LNNDELV---   81 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSCHHHH---
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccC-CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-ccchhHH---
Confidence            34568899999999999999998888754322221 0111111222221 2233444444444322211 1111111   


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812          373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE-----SMNEFETAISLLKRTLALLEKLPQA  447 (630)
Q Consensus       373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~  447 (630)
                       .+..-|. ..--.+-...+...+.+......+++....-.+-..|..|.     ..|..++|...|++|..+......+
T Consensus        82 -~~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~p  159 (220)
T d2o8pa1          82 -KICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDK  159 (220)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             -HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence             1111111 11122334455666666655544433222223333455443     4678899999999999998876666


Q ss_pred             CCch-hHHHHHHHHHH-HHcCChhhHHHHHHHHHHHHH
Q 006812          448 QHSE-GSVSARIGWLL-LLTGKVPQAIPYLESAAERLK  483 (630)
Q Consensus       448 ~~~~-~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~  483 (630)
                      .+|. .....+.+..+ .-.++.++|.++.++|.+.+.
T Consensus       160 t~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fd  197 (220)
T d2o8pa1         160 IEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILE  197 (220)
T ss_dssp             GGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            6665 33445555554 458999999999998855443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.60  E-value=2.4  Score=27.18  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812          408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL  444 (630)
Q Consensus       408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  444 (630)
                      .+.+..+...|.-+...|+|++|++++++|.......
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999999999999999998875443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.33  E-value=4.9  Score=25.72  Aligned_cols=37  Identities=19%  Similarity=0.068  Sum_probs=30.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812          204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI  240 (630)
Q Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  240 (630)
                      -..+-.+...+.-+...|.|++|+++++++.......
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3455667788999999999999999999998766554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.85  E-value=16  Score=31.46  Aligned_cols=260  Identities=12%  Similarity=0.090  Sum_probs=129.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 006812          212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA  291 (630)
Q Consensus       212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  291 (630)
                      ..|..+...|.|+.|..+|...         +       -+..+..++...++++.|.+...++          +.+.  
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~---------~-------d~~rl~~~~v~l~~~~~avd~~~k~----------~~~~--   70 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNV---------S-------NFGRLASTLVHLGEYQAAVDGARKA----------NSTR--   70 (336)
T ss_dssp             ----------CTTTHHHHHHHT---------T-------CHHHHHHHHHTTTCHHHHHHHHHHH----------TCHH--
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC---------C-------CHHHHHHHHHhhccHHHHHHHHHHc----------CCHH--
Confidence            4788888999999999888752         1       2444567778889999888876553          2222  


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812          292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL  370 (630)
Q Consensus       292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  370 (630)
                       ++..+........+..-+.-           .+.. .....-...+...|...|.+++.+.++..++..... +   ..
T Consensus        71 -~~k~~~~~l~~~~e~~la~i-----------~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~-~---~~  134 (336)
T d1b89a_          71 -TWKEVCFACVDGKEFRLAQM-----------CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-H---MG  134 (336)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHH-----------TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-C---HH
T ss_pred             -HHHHHHHHHHhCcHHHHHHH-----------HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCcc-c---hH
Confidence             33344444444444332211           1111 112223345667788899999999999987653222 2   22


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHHH---------HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812          371 VFISMGKALCNQEKFADAKRCLEI---------ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALL  441 (630)
Q Consensus       371 ~~~~la~~~~~~~~~~~A~~~~~~---------a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  441 (630)
                      .+..++.+|.+.+. ++-.+++..         ++.++.+.         ..|..+..+|.+.|++++|+..+-.-.   
T Consensus       135 ~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~---------~l~~elv~Ly~~~~~~~~A~~~~i~~~---  201 (336)
T d1b89a_         135 MFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQA---------HLWAELVFLYDKYEEYDNAIITMMNHP---  201 (336)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTT---------TCHHHHHHHHHHTTCHHHHHHHHHHST---
T ss_pred             HHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHc---------CChHHHHHHHHhcCCHHHHHHHHHHcc---
Confidence            56677777776543 333333322         22222111         223456677888888888876653210   


Q ss_pred             HhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHH----------HHHHHHHHHHcCChh
Q 006812          442 EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYI----------YNNLGAAYLELDRPQ  511 (630)
Q Consensus       442 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~  511 (630)
                              +++.-....-.++.+.++.+...+...-.++        .+|.....          ...+.....+.++..
T Consensus       202 --------~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~--------~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~  265 (336)
T d1b89a_         202 --------TDAWKEGQFKDIITKVANVELYYRAIQFYLE--------FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLP  265 (336)
T ss_dssp             --------TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--------HCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTT
T ss_pred             --------hhhhhHHHHHHHHHccCChHHHHHHHHHHHH--------cCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcH
Confidence                    0000111222233334443322222211111        01211110          013344556667777


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 006812          512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL  554 (630)
Q Consensus       512 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  554 (630)
                      -...+++....       .+..   .+...|+.+|...++++.
T Consensus       266 li~p~Le~v~~-------~n~~---~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         266 LVKPYLRSVQN-------HNNK---SVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             TTHHHHHHHHT-------TCCH---HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHH-------cChH---HHHHHHHHHHhCcchhHH
Confidence            77777766433       1233   478889999999999644

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.60  E-value=6.2  Score=26.45  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCC
Q 006812          110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNN  150 (630)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  150 (630)
                      ..+..+...+..+...| +|++|+.+|.++++.+......+
T Consensus        13 ~~A~~l~~~Av~~D~~g-~y~eA~~~Y~~aie~l~~~~~~e   52 (93)
T d1wfda_          13 TAAVAVLKRAVELDAES-RYQQALVCYQEGIDMLLQVLKGT   52 (93)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhhcc
Confidence            34566677888888888 99999999999999887765444